Psyllid ID: psy574
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 977 | 2.2.26 [Sep-21-2011] | |||||||
| Q9HCK4 | 1378 | Roundabout homolog 2 OS=H | yes | N/A | 0.779 | 0.552 | 0.326 | 1e-106 | |
| Q7TPD3 | 1470 | Roundabout homolog 2 OS=M | yes | N/A | 0.779 | 0.518 | 0.322 | 1e-104 | |
| G5EBF1 | 1273 | Protein sax-3 OS=Caenorha | yes | N/A | 0.710 | 0.545 | 0.329 | 1e-103 | |
| Q9Y6N7 | 1651 | Roundabout homolog 1 OS=H | no | N/A | 0.780 | 0.462 | 0.304 | 2e-98 | |
| O89026 | 1612 | Roundabout homolog 1 OS=M | no | N/A | 0.783 | 0.474 | 0.305 | 5e-98 | |
| O55005 | 1651 | Roundabout homolog 1 OS=R | no | N/A | 0.778 | 0.460 | 0.303 | 2e-96 | |
| Q96MS0 | 1386 | Roundabout homolog 3 OS=H | no | N/A | 0.716 | 0.505 | 0.321 | 2e-85 | |
| Q9Z2I4 | 1366 | Roundabout homolog 3 OS=M | no | N/A | 0.765 | 0.547 | 0.297 | 1e-78 | |
| Q92626 | 1479 | Peroxidasin homolog OS=Ho | no | N/A | 0.364 | 0.240 | 0.298 | 2e-37 | |
| Q3UQ28 | 1475 | Peroxidasin homolog OS=Mu | no | N/A | 0.364 | 0.241 | 0.295 | 7e-37 |
| >sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 276/845 (32%), Positives = 411/845 (48%), Gaps = 83/845 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 128 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-IRG 185
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F
Sbjct: 186 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFR 245
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G Y+C AEN VGK+ AS
Sbjct: 246 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEAS 305
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD-RVDN 239
ATLTV+ P RP D + GR F C +G+P P+ FW EG+++L++P + N
Sbjct: 306 ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPN 365
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILF 298
+ ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP+IL
Sbjct: 366 SRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPPIILQ 422
Query: 299 GPANQTLPLRSEARLRCQVRGE--GSVQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKED 355
GPANQTL + A L+C+ G+ + W + G G PR + G+L + ++ D
Sbjct: 423 GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISD 482
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
+G YTCV S G SWSA L T + + S PGPP+KP + + T N +T
Sbjct: 483 TGTYTCVATSSSGETSWSAVLDV---TESGATISKNYDLSDLPGPPSKPQVTDVTKNSVT 539
Query: 416 LAWSRNNQIGSSSLL---GYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
L+W Q G+ L Y +E +S+ + + +W VA +V + + TV L
Sbjct: 540 LSW----QPGTPGTLPASAYIIEAFSQ----------SVSNSWQTVANHVKTTLYTVRGL 585
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532
Y F+VRA+N GLS PSP+SD + + S +G+
Sbjct: 586 RPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD------ISPPAQGV-------------- 625
Query: 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEG---VYIYSRGLDPPASV 588
RQ +E G L+ L +T T+V++TW + +I+G +Y + GL +S
Sbjct: 626 -DHRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSW 684
Query: 589 AMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLT 648
L E S LV L YE + P+F G S + VRT E PS PQ
Sbjct: 685 QNLDAKVPTERSAVLV-NLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEEAPSAPPQSV 743
Query: 649 DPVLL---NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705
+ + N+TS+ + W PPP NG+I+ Y+I G IN TV A+ ++++
Sbjct: 744 TVLTVGSYNSTSISVSWDPPPPDHQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVIIGG 803
Query: 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTD 765
L GI+Y V +AA+ AG G + S P+P + ++ + + ++ +TD
Sbjct: 804 LFPGIQYRVEVAASTSAGVG---------VKSEPQPIIIGRRNEVVITENNNSITEQITD 854
Query: 766 LTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRR----------TLHAKKSSLDHNSA 815
+ + P FIA + V+ + F + RR+ T L N +
Sbjct: 855 V-----VKQPAFIAGIGGACWVILMGFSIWLYWRRKKRKGLSNYAVTFQRGDGGLMSNGS 909
Query: 816 GPGLL 820
PGLL
Sbjct: 910 RPGLL 914
|
Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. Homo sapiens (taxid: 9606) |
| >sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 274/849 (32%), Positives = 412/849 (48%), Gaps = 87/849 (10%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 128 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-IRG 185
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F
Sbjct: 186 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFR 245
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G YVC AEN VGK+ AS
Sbjct: 246 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYVCIAENRVGKVEAS 305
Query: 181 ATLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD- 235
ATLTV++ P+ RP D + GR F C +G+P P+ FW EG+++L++P
Sbjct: 306 ATLTVRVRPVAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQP 365
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPP 294
+ N + ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP
Sbjct: 366 QQPNSRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPP 422
Query: 295 VILFGPANQTLPLRSEARLRCQVRGE--GSVQWWR-GEREVGSGPRVNVTGDGSLVLTDV 351
+IL GP NQTL + A L+C+ GE + W + G +G PR + G+L + ++
Sbjct: 423 IILQGPINQTLAVDGTALLKCKATGEPLPVISWLKEGFTFLGRDPRATIQDQGTLQIKNL 482
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
D+G YTCV S G SWSA L T + + + PGPP+KP + + +
Sbjct: 483 RISDTGTYTCVATSSSGETSWSAVLDV---TESGATISKNYDMNDLPGPPSKPQVTDVSK 539
Query: 412 NGLTLAWSRNNQIGSSSLL---GYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468
N +TL+W Q G+ +L Y +E +S+ + +S W VA +V + + T
Sbjct: 540 NSVTLSW----QPGTPGVLPASAYIIEAFSQSVSNS----------WQTVANHVKTTLYT 585
Query: 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGR 528
V L Y F+VRA+N GLS PSP+SD + + S +G+
Sbjct: 586 VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD------ISPPAQGV---------- 629
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEG---VYIYSRGLDP 584
RQ +E G ++ L +T T+V++TW + +I+G +Y + GL
Sbjct: 630 -----DHRQVQKELGDVVVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 684
Query: 585 PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGV 644
L E S LV L YE + P+F G S + VRT E PS
Sbjct: 685 STVWQNLDAKVPTERSAVLV-NLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEEAPSAP 743
Query: 645 PQLTDPVLL---NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL 701
PQ + + N+TS+ + W PPP NG+I+ Y+I G IN TV A+ ++
Sbjct: 744 PQSVTVLTVGSHNSTSISVSWDPPPADHQNGIIQEYKIWCLGNETRFHINKTVDAAIRSV 803
Query: 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMET 761
++ L GI+Y V +AA+ AG G + S P+P + ++ + + ++
Sbjct: 804 VIGGLFPGIQYRVEVAASTSAGVG---------VKSEPQPIIIGGRNEVVITENNNSITE 854
Query: 762 DLTDLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRR----------TLHAKKSSLD 811
+TD+ + P FIA + V+ + F + RR+ T L
Sbjct: 855 QITDV-----VKQPAFIAGIGGACWVILMGFSIWLYWRRKKRKGLSNYAVTFQRGDGGLM 909
Query: 812 HNSAGPGLL 820
N + PGLL
Sbjct: 910 SNGSRPGLL 918
|
Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. Mus musculus (taxid: 10090) |
| >sp|G5EBF1|SAX3_CAEEL Protein sax-3 OS=Caenorhabditis elegans GN=sax-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/740 (32%), Positives = 376/740 (50%), Gaps = 46/740 (6%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LRE+FRV+P++ + G+ A+LEC PPRG PEP + W+K+ + ++ R L
Sbjct: 128 LAMLREDFRVRPRTVQALGGEMAVLECSPPRGFPEPVVSWRKDDKELRIQDMPRYTLHSD 187
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NL I ++D G YQCV N+ G R S A L V KP + PKD TV + ++F+
Sbjct: 188 GNLIIDPVDRSDSGTYQCVANNMVGERVSNPARLSVFEKPKFEQEPKDMTVDVGAAVLFD 247
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
C V GD + WKR MP R + +R L++ V+ D GEYVC A N G + A
Sbjct: 248 CRVTGDPQPQITWKRKNEPMPVTRAYIAKDNRGLRIERVQPSDEGEYVCYARNPAGTLEA 307
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
SA L VQ P + +P+D + G A F C + G P P+ FW EG + L++P +
Sbjct: 308 SAHLRVQAPPSFQTKPADQSVPAGGTATFECTLVGQPSPAYFWSKEGQQDLLFPSYVSAD 367
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL-----TVSGPDP-NPP 293
+ +++ G L I+ V R +C G+N+AGS L++A+L V+G P PP
Sbjct: 368 GRTKVSPTGT--LTIEEV-RQVDEGAYVCAGMNSAGSSLSKAALKVTTKAVTGNTPAKPP 424
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVG-SGPRVNVTGDGSLVLTD 350
P I G NQTL + S A L CQ G+ + + W R + + R++ GSL + D
Sbjct: 425 PTIEHGHQNQTLMVGSSAILPCQASGKPTPGISWLRDGLPIDITDSRISQHSTGSLHIAD 484
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
+ K D+G YTC+ K+ G ++WSASL E T+ N F R P+PS +P PT+P +VN T
Sbjct: 485 LKKPDTGVYTCIAKNEDGESTWSASLTVEDHTS-NAQFVRMPDPSNFPSSPTQPIIVNVT 543
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470
+ L W+ + G+ + GY ++ YS L TW + V S +
Sbjct: 544 DTEVELHWNAPSTSGAGPITGYIIQYYSPDL----------GQTWFNIPDYVASTEYRIK 593
Query: 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGE 530
L +Y F++RA N G+ PS S + ++ S+ +N D E
Sbjct: 594 GLKPSHSYMFVIRAENEKGIGTPSVSSALVTTSKPAAQVALSD-------KNKMDMAIAE 646
Query: 531 SLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSRGLDPPASVA 589
+ Q LI+L EVK + ST+V+L W+ + I+G YI RG PP +
Sbjct: 647 KRLTSEQ--------LIKLEEVKTINSTAVRLFWKKRKLEELIDGYYIKWRG--PPRTND 696
Query: 590 MLTV-LHAGEASGFLVTGLAHYSRYEFFLVPFFG---SVDGKPSNLRAVRTLECEPSGVP 645
V + + ++V+ L ++ YEFF++P+ S+ G PSN V T E PS P
Sbjct: 697 NQYVNVTSPSTENYVVSNLMPFTNYEFFVIPYHSGVHSIHGAPSNSMDVLTAEAPPSLPP 756
Query: 646 QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705
+ +LN T++ + WK P NG+++ +QI++ G + N+T + ++ L +
Sbjct: 757 EDVRIRMLNLTTLRISWKAPKADGINGILKGFQIVIVGQAPNNNRNITTNERAASVTLFH 816
Query: 706 LSAGIRYSVSLAATNRAGTG 725
L G+ Y + +AA + G G
Sbjct: 817 LVTGMTYKIRVAARSNGGVG 836
|
Required to confine migrating sex myoblasts to the ventral muscle quadrants during their migration through the body and for multiple aspects of sensory, motor, and interneuron axon guidance. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 256/841 (30%), Positives = 401/841 (47%), Gaps = 78/841 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G
Sbjct: 165 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRG 222
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I +RK+D G+Y CV N+ G RES A L VL +P ++ P + V+ F+
Sbjct: 223 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFK 282
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C GD V TV W++ +P+ R + +L++ V D G Y C AEN VGK AS
Sbjct: 283 CEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEAS 342
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY---PGDRV 237
ATLTVQ P +P D + +GR F C G+P P+ FW EG+++L++ P
Sbjct: 343 ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSS 402
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN-PPPVI 296
T D L I NV R+ I C +N AGS + +A L V+ + PPPVI
Sbjct: 403 SRFSVSQTGD----LTITNVQRSDVGYYI-CQTLNVAGSIITKAYLEVTDVIADRPPPVI 457
Query: 297 LFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGS-GPRVNVTGDGSLVLTDVTK 353
GP NQT+ + L C G ++ W + V + R+ +G L +
Sbjct: 458 RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKL 517
Query: 354 EDSGEYTCVVKSPHGSASWSASL---RFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
D+G YTC+ +P G A+WSA + F P P R +P+ P P+KP + + +
Sbjct: 518 GDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP----RPTDPNLIPSAPSKPEVTDVS 573
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470
N +TL+W N G++ Y +E +S + ++W VA NV + +
Sbjct: 574 RNTVTLSWQPNLNSGATP-TSYIIEAFSH----------ASGSSWQTVAENVKTETSAIK 622
Query: 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF--SEGIFSEGGKGIFSENFPDEGR 528
L Y FLVRA N++G+S PS +SD + + S+G+
Sbjct: 623 GLKPNAIYLFLVRAANAYGISDPSQISDPVKTQDVLPTSQGV------------------ 664
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEGVYIYSR--GLDPP 585
+Q +E G +++ L ++S+S+++ W + + YI+G I R G +
Sbjct: 665 -----DHKQVQRELGNAVLHLHNPTVLSSSSIEVHWTVDQQSQYIQGYKILYRPSGANHG 719
Query: 586 ASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP 645
S ++ + + ++ L YE PFF G S ++ +TLE PS P
Sbjct: 720 ESDWLVFEVRTPAKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPP 779
Query: 646 Q--LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703
Q N T++L+ W+PPP T NG+++ Y++ G IN TV ST ++++
Sbjct: 780 QGVTVSKNDGNGTAILVSWQPPPEDTQNGMVQEYKVWCLGNETRYHINKTVDGSTFSVVI 839
Query: 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP-RLEDWASQSGRSRGDGTMETD 762
L GIRYSV +AA+ AG+G S P + L + P ED S +
Sbjct: 840 PFLVPGIRYSVEVAASTGAGSGVKSEPQFIQLDAHGNPVSPEDQVS----------LAQQ 889
Query: 763 LTDLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAGPGLLAT 822
++D+ + P FIA + + ++ ++F + R+ + S+ P T
Sbjct: 890 ISDV-----VKQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIRKVPSFTFT 944
Query: 823 P 823
P
Sbjct: 945 P 945
|
Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development. Homo sapiens (taxid: 9606) |
| >sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 256/839 (30%), Positives = 397/839 (47%), Gaps = 74/839 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G
Sbjct: 126 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRG 183
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I +RK+D G+Y CV N+ G RES A L VL +P ++ P + V+ F+
Sbjct: 184 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFK 243
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C GD V TV W++ +P+ R + +L++ V D G Y C AEN VGK AS
Sbjct: 244 CEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEAS 303
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY---PGDRV 237
ATLTVQ P +P D + +GR F C G+P P+ FW EG+++L++ P
Sbjct: 304 ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSS 363
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN-PPPVI 296
T D L I NV R+ I C +N AGS + +A L V+ + PPPVI
Sbjct: 364 SRFSVSQTGD----LTITNVQRSDVGYYI-CQTLNVAGSIITKAYLEVTDVIADRPPPVI 418
Query: 297 LFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGS--GPRVNVTGDGSLVLTDVTK 353
GP NQT+ + L C G WR + + S R+ G L +
Sbjct: 419 RQGPVNQTVAVDGTLILSCVATGSPAPTILWRKDGVLVSTQDSRIKQLESGVLQIRYAKL 478
Query: 354 EDSGEYTCVVKSPHGSASWSASL---RFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
D+G YTC +P G A+WSA + F P P R +P+ P P+KP + + +
Sbjct: 479 GDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPP----RPTDPNLIPSAPSKPEVTDVS 534
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470
N +TL+W N G++ Y +E +S + ++W A NV + +
Sbjct: 535 KNTVTLSWQPNLNSGATP-TSYIIEAFSH----------ASGSSWQTAAENVKTETFAIK 583
Query: 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGE 530
L Y FLVRA N++G+S PS +SD + +++ P +G
Sbjct: 584 GLKPNAIYLFLVRAANAYGISDPSQISDPVK------------------TQDVPPTSQGV 625
Query: 531 SLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEGVYIYSR--GLDPPAS 587
++ ++ L G ++ L ++S+SV++ W + + YI+G I R G S
Sbjct: 626 DHKQVQREL---GNVVLHLHNPTILSSSSVEVHWTVDQQSQYIQGYKILYRPSGASHGES 682
Query: 588 VAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQ- 646
++ + + ++ L YE PFF G S ++ +TLE PS P+
Sbjct: 683 EWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPPRS 742
Query: 647 -LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705
N T++L+ W+PPP T NG+++ Y++ G IN TV ST ++++ +
Sbjct: 743 VTVSKNDGNGTAILVTWQPPPEDTQNGMVQEYKVWCLGNETKYHINKTVDGSTFSVVIPS 802
Query: 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP-RLEDWASQSGRSRGDGTMETDLT 764
L GIRYSV +AA+ AG G S P + L S P ED S + ++
Sbjct: 803 LVPGIRYSVEVAASTGAGPGVKSEPQFIQLDSHGNPVSPEDQVS----------LAQQIS 852
Query: 765 DLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAGPGLLATP 823
D+ + P FIA + + ++ ++F + R+ + S+ P TP
Sbjct: 853 DV-----VRQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLTSTYAGIRKVPSFTFTP 906
|
Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex (By similarity). May be required for lung development. Mus musculus (taxid: 10090) |
| >sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN=Robo1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 256/843 (30%), Positives = 399/843 (47%), Gaps = 82/843 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G
Sbjct: 165 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRG 222
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I +RK+D G+Y CV N+ G RES A + VL +P ++ P + V+ F+
Sbjct: 223 GKLMITYTRKSDAGKYVCVGTNMVGERESKVADVTVLERPSFVKRPSNLAVTVDDSAEFK 282
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C GD V T W++ +P+ R + +L++ V D G Y C AEN VGK AS
Sbjct: 283 CEARGDPVPTFGWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEAS 342
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY---PGDRV 237
ATLTVQ P +P D + +GR F C G+P P+ FW EG+++L++ P
Sbjct: 343 ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSS 402
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN-PPPVI 296
T D L + NV R+ I C +N AGS + +A L V+ + PPPVI
Sbjct: 403 SRFSVSQTGD----LTVTNVQRSDVGYYI-CQTLNVAGSIITKAYLEVTDVIADRPPPVI 457
Query: 297 LFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGS-GPRVNVTGDGSLVLTDVTK 353
GP NQT+ + L C G ++ W + V + R+ G L +
Sbjct: 458 RQGPVNQTVAVDGTLTLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLESGVLQIRYAKL 517
Query: 354 EDSGEYTCVVKSPHGSASWSASL---RFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
D+G YTC +P G A+WSA + F P P R +P+ P P+KP + + +
Sbjct: 518 GDTGRYTCTASTPSGEATWSAYIEVQEFGVPVQPP----RPTDPNLIPSAPSKPEVTDVS 573
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470
N +TL W N G++ Y +E +S + ++W VA NV + +
Sbjct: 574 KNTVTLLWQPNLNSGATP-TSYIIEAFSH----------ASGSSWQTVAENVKTETFAIK 622
Query: 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGE 530
L Y FLVRA N++G+S PS +SD + +++ P +G
Sbjct: 623 GLKPNAIYLFLVRAANAYGISDPSQISDPVK------------------TQDVPPTTQGV 664
Query: 531 SLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEGVYIYSR--GLDPPAS 587
++ ++ L G ++ L ++S+SV++ W + + YI+G I R G S
Sbjct: 665 DHKQVQREL---GNVVLHLHNPTILSSSSVEVHWTVDQQSQYIQGYKILYRPSGASHGES 721
Query: 588 VAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQ- 646
++ + + ++ L YE PFF G S ++ +TLE PS P+
Sbjct: 722 EWLVFEVRTPTKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEERPSAPPRS 781
Query: 647 -LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705
N T++L+ W+PPP T NG+++ Y++ G IN TV ST ++++
Sbjct: 782 VTVSKNDGNGTAILVTWQPPPEDTQNGMVQEYKVWCLGNETRYHINKTVDGSTFSVVIPF 841
Query: 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP-RLEDWASQSGRSRGDGTMETDLT 764
L GIRYSV +AA+ AG G S P + L S P ED S + ++
Sbjct: 842 LVPGIRYSVEVAASTGAGPGVKSEPQFIQLDSHGNPVSPEDQVS----------LAQQIS 891
Query: 765 DLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAG----PGLL 820
D+ + P FIA + + ++ ++F + R+ K++ L AG P
Sbjct: 892 DV-----VKQPAFIAGIGAACWIILMVFSIWLYRHRK----KRNGLSSTYAGIRKVPSFT 942
Query: 821 ATP 823
TP
Sbjct: 943 FTP 945
|
Receptor for SLIT1 and SLIT2 which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. In axon growth cones, the silencing of the attractive effect of NTN1 by SLIT2 may require the formation of a ROBO1-DCC complex. May be required for lung development. Rattus norvegicus (taxid: 10116) |
| >sp|Q96MS0|ROBO3_HUMAN Roundabout homolog 3 OS=Homo sapiens GN=ROBO3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 244/759 (32%), Positives = 361/759 (47%), Gaps = 59/759 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P + VA G+ A+LEC PPRGHPEP++ W+K+G + E + + G
Sbjct: 161 VAVLRDDFRQSPGNVVVAVGEPAVLECVPPRGHPEPSVSWRKDGARLKEEEGRIT--IRG 218
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L + + K+D G Y CV N+AG RES A + VL +P +R P + V A + + F
Sbjct: 219 GKLMMSHTLKSDAGMYVCVASNMAGERESAAAEVMVLERPSFLRRPVNQVVLADAPVTFL 278
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD + W++ +P R + SL + V ED G Y C AEN+VG+ AS
Sbjct: 279 CEVKGDPPPRLRWRKEDGELPTGRYEIRSDHSLWIGHVSAEDEGTYTCVAENSVGRAEAS 338
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L+V + P + +P D G F C +G+PPP+ FW EG++ L++P +
Sbjct: 339 GSLSVHVPPQLVTQPQDQMAAPGESVAFQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPT 398
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNP-PPVILFG 299
+ L I V R A + C V+ AGS LA+A L + G + PPVIL G
Sbjct: 399 -GRFSVSPRGQLNITAVQRGDAGYYV-CQAVSVAGSILAKALLEIKGASLDGLPPVILQG 456
Query: 300 PANQTLPLRSEARLRCQVRG--EGSVQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKEDS 356
PANQTL L S L C+V G + SV+W + G+ G + +G+L + +V + D
Sbjct: 457 PANQTLVLGSSVWLPCRVTGNPQPSVRWKKDGQWLQGDDLQFKTMANGTLYIANVQEMDM 516
Query: 357 GEYTCVVKSPHGSASWSASLRFE-----SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
G Y+CV KS G A+WS L+ SP P EPS+ PG P++P + T
Sbjct: 517 GFYSCVAKSSTGEATWSGWLKMREDWGVSPDPPT-------EPSSPPGAPSQPVVTEITK 569
Query: 412 NGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTN 471
N +TL W N Q G +++ Y +E +S A TW VA V TV+
Sbjct: 570 NSITLTWKPNPQTG-AAVTSYVIEAFS----------PAAGNTWRTVADGVQLETHTVSG 618
Query: 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGES 531
L Y FLVRA+ + GLS PSP+S+ + + + S D RG+
Sbjct: 619 LQPNTIYLFLVRAVGAWGLSEPSPVSEPVRTQDSSP------------SRPVEDPWRGQ- 665
Query: 532 LRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSRGLDPPASVAM 590
Q L E L E + P T ++++W + ++G + R P
Sbjct: 666 -----QGLAEVAVRLQEPIVLGPRT---LQVSWTVDGPVQLVQGFRVSWRVAGPEGGSWT 717
Query: 591 LTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL-ECEPSGVPQLTD 649
+ L + ++ GL ++ + V G +L R++ E PSG PQ
Sbjct: 718 MLDLQSPSQQSTVLRGLPPGTQIQ-IKVQAQGQEGLGAESLSVTRSIPEEAPSGPPQGVA 776
Query: 650 PVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLS 707
L +S+ + W+PP NGVI YQI G + +N + + + +L L
Sbjct: 777 VALGGDGNSSITVSWEPPLPSQQNGVITEYQIWCLGNESRFHLNRSAAGWARSAMLRGLV 836
Query: 708 AGIRYSVSLAATNRAGTGPYSRPALLSLTSGP--EPRLE 744
G+ Y +AA AG G S P L+ L S P EP LE
Sbjct: 837 PGLLYRTLVAAATSAGVGVPSAPVLVQLPSPPDLEPGLE 875
|
Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1 (By similarity). Required for hindbrain axon midline crossing. Homo sapiens (taxid: 9606) |
| >sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 248/834 (29%), Positives = 386/834 (46%), Gaps = 86/834 (10%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P + VA G+ A++EC PP+GHPEP + WKK I + + + G
Sbjct: 161 VAVLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKGK--IKLKEEEGRITIRG 218
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L + + K+D G Y CV N+AG RES A L VL +P +R P + V A + + F
Sbjct: 219 GKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPVNFL 278
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD +HW++ +P R + SL + V ED G Y C AEN+VG+ AS
Sbjct: 279 CEVQGDPQPNLHWRKDDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAEAS 338
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L+V + P +P + + G + F C +G+PPP+ FW EG++ L++P + +
Sbjct: 339 GSLSVHVPPQFVTKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPM 398
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNP-PPVILFG 299
+ S L I V + +C V+ AGS LA+A L + G + PP+IL G
Sbjct: 399 GRLLVSP-RGQLNITEV-KIGDGGYYVCQAVSVAGSILAKALLEIKGASIDGLPPIILQG 456
Query: 300 PANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV-GSGPRVNVTGDGSLVLTDVTKEDS 356
PANQTL L S L C+V G + ++QW + ER + G + N+ +G+L + + + D
Sbjct: 457 PANQTLVLGSSVWLPCRVIGNPQPNIQWKKDERWLQGDDSQFNLMDNGTLHIASIQEMDM 516
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT----------L 406
G Y+CV KS G A+W++ LR + + PGP T P+ +
Sbjct: 517 GFYSCVAKSSIGEATWNSWLRKQE------------DWGASPGPATGPSNPPGPPSQPIV 564
Query: 407 VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
TAN +TL W N Q G+++ Y +E +S+ A TW VA V
Sbjct: 565 TEVTANSITLTWKPNPQSGATA-TSYVIEAFSQ----------AAGNTWRTVADGVQLET 613
Query: 467 LTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDE 526
T++ L Y FLVRA+ + GLS PSP+S+ + + + S D
Sbjct: 614 YTISGLQPNTIYLFLVRAVGAWGLSEPSPVSEPVQTQDSS------------LSRPAEDP 661
Query: 527 GRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSR--GLD 583
+G+ + L E + E T + P T ++++W + ++G + R GLD
Sbjct: 662 WKGQ------RGLAEVAVRMQEPTVLGPRT---LQVSWTVDGPVQLVQGFRVSWRIAGLD 712
Query: 584 PPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
S ML L + ++ GL ++ + + G S E PSG
Sbjct: 713 -QGSWTMLD-LQSPHKQSTVLRGLPPGAQIQIKVQVQGQEGLGAESPFVTRSIPEEAPSG 770
Query: 644 VPQLTDPVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL 701
PQ L +SV + W+PP NGVI YQI G + +N + + ++
Sbjct: 771 PPQGVAVALGGDRNSSVTVSWEPPLPSQRNGVITEYQIWCLGNESRFHLNRSAAGWARSV 830
Query: 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMET 761
+ L G Y +AA AG G S P L+ L P A++ G +G E
Sbjct: 831 TFSGLLPGQIYRALVAAATSAGVGVASAPVLVQLPFPP-------AAEPGPEVSEGLAER 883
Query: 762 DLTDLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSA 815
L + L P F+A ++ + L F A + R++ ++ L H +A
Sbjct: 884 -LAKV-----LRKPAFLAGSSAACGALLLGFCAALYRRQK----QRKELSHYTA 927
|
Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing. Mus musculus (taxid: 10090) |
| >sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 182/379 (48%), Gaps = 23/379 (6%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+P+ V +G+T C G+P+P ++W +N + + + RL L+D L IQ++++
Sbjct: 251 EPQDADVTSGNTVYFTCRA-EGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQE 309
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
TD G YQC+ KNVAG ++ + LR +P + P++T V + ECS G
Sbjct: 310 TDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVGESVTLECSATGHP 369
Query: 128 VLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184
+ W R G P + R+++ PS L + +V D+GEY C A N + + A+A +
Sbjct: 370 PPRISWTR-GDRTPLPVDPRVNITPSGGLYIQNVVQGDSGEYACSATNNIDSVHATAFII 428
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
VQ P P D + G+ F C +G+PPP W G++ + DR + +
Sbjct: 429 VQALPQFTVTPQDRVVIEGQTVDFQCEAKGNPPPVIAWTKGGSQLSV---DR----RHLV 481
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
S G L+I V+ C VN GS A LTV P PV P++ T
Sbjct: 482 LSSGT--LRISGVALHDQGQ-YECQAVNIIGSQKVVAHLTVQ---PRVTPVFASIPSDTT 535
Query: 305 LPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
+ + + +L C +G E ++ W + +V + +++ +G L + DV D+G Y CV
Sbjct: 536 VEVGANVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGPADAGRYECV 595
Query: 363 VKSPHGSASWSASLRFESP 381
++ GSAS S L P
Sbjct: 596 ARNTIGSASVSMVLSVNVP 614
|
Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 181/379 (47%), Gaps = 23/379 (6%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+P+ V +G+T C G+P+P ++W +N + + + RL L+D L IQ++++
Sbjct: 248 EPQDADVTSGNTVYFTCRA-EGNPKPEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQE 306
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
D+G YQC+ KNVAG ++ + LR L +P + P++T V + ECS G
Sbjct: 307 ADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVGESVTLECSATGHP 366
Query: 128 VLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184
+ + W R G P + R+++ PS L + +V D+GEY C A N+V I A+A +
Sbjct: 367 LPQITWTR-GDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFASNSVDSIHATAFII 425
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
VQ P P + G+ F C +G P P W G++ + DR + +
Sbjct: 426 VQALPQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSV---DR----RHLV 478
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
S G L+I V+ C VN GS A LTV P PV P++ T
Sbjct: 479 LSSGT--LRISGVALHDQGQ-YECQAVNIIGSQKVVAHLTVQ---PRVTPVFASIPSDMT 532
Query: 305 LPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
+ + + +L C +G E ++ W + +V + +++ +G L + DV D+G Y CV
Sbjct: 533 VEVGTNVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGTADAGRYECV 592
Query: 363 VKSPHGSASWSASLRFESP 381
++ G AS S L P
Sbjct: 593 ARNTIGYASVSMVLSVNVP 611
|
Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 977 | ||||||
| 170053065 | 1253 | roundabout [Culex quinquefasciatus] gi|1 | 0.785 | 0.612 | 0.451 | 0.0 | |
| 157127854 | 1285 | roundabout [Aedes aegypti] gi|108872774| | 0.810 | 0.616 | 0.433 | 0.0 | |
| 374637166 | 1066 | Robo2/3-like protein, partial [Tribolium | 0.807 | 0.740 | 0.442 | 0.0 | |
| 91089505 | 1136 | PREDICTED: similar to roundabout [Tribol | 0.807 | 0.694 | 0.442 | 0.0 | |
| 157114558 | 1345 | roundabout [Aedes aegypti] gi|108877237| | 0.867 | 0.630 | 0.410 | 0.0 | |
| 157109915 | 791 | roundabout [Aedes aegypti] gi|108868400| | 0.786 | 0.970 | 0.429 | 0.0 | |
| 242008680 | 822 | roundabout 1, 2, 3, putative [Pediculus | 0.720 | 0.856 | 0.456 | 0.0 | |
| 357616961 | 1229 | putative roundabout [Danaus plexippus] | 0.876 | 0.696 | 0.398 | 0.0 | |
| 195433867 | 1401 | GK14947 [Drosophila willistoni] gi|19416 | 0.784 | 0.546 | 0.428 | 0.0 | |
| 194759230 | 1335 | GF15179 [Drosophila ananassae] gi|190615 | 0.882 | 0.645 | 0.400 | 1e-180 |
| >gi|170053065|ref|XP_001862505.1| roundabout [Culex quinquefasciatus] gi|167873760|gb|EDS37143.1| roundabout [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/822 (45%), Positives = 518/822 (63%), Gaps = 55/822 (6%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+LRE+FR++P++ RVA G+TALLECGPP+G+PEP + W+KNG +D NSKR+R+VDG
Sbjct: 116 FEMLREDFRLEPQNTRVAQGETALLECGPPKGYPEPVVTWRKNGQTMDMSNSKRIRIVDG 175
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQD+R++DDGRYQCV KNV G REST A LRV VKP++IRGP++ TV A +VF+
Sbjct: 176 GNLAIQDARQSDDGRYQCVAKNVVGIRESTVAFLRVHVKPFLIRGPQNQTVVAGRSVVFQ 235
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGG+ + V W+R S MP R+ +L RSL++ D+ ++D GEY CEA+NAVG I+
Sbjct: 236 CRVGGEPIPDVLWRRSASGGNMPLGRVHILEDRSLKIDDITVDDMGEYSCEADNAVGSIT 295
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
AS L V P RP + E+G +A+F C G P P+ FW LEGNR+L++PG R
Sbjct: 296 ASGNLVVHSPPSFIIRPKNQIAELGSEALFECQASGHPHPTLFWSLEGNRTLLFPGTRSG 355
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
NI+ +DG ++L + N+ R +I+C VN GS R L+V+ D PPP+IL
Sbjct: 356 NIEVTENADGTSVLSVSNIDRVDNGRVIVCSAVNNVGSVSTRVVLSVNLQDDRPPPLILQ 415
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-ED 355
GP NQTLP++S A L C+ G + + W+R V + RVN+T G+L + D+ K +D
Sbjct: 416 GPINQTLPIKSVAILPCKASGNPAPVISWYRDGIPVLTTFRVNITDSGTLTIADLNKNDD 475
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
SG YTCV S G ++WSASLR +SPTNPNI F+RAPE ST+PGPP KP + + + + +T
Sbjct: 476 SGLYTCVASSKTGKSTWSASLRLDSPTNPNIKFYRAPEASTFPGPPGKPLVTDVSESTVT 535
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
++W R+N +G+SSL+GY VEM+ R AT W VA + T L G
Sbjct: 536 ISWVRSNAVGASSLVGYIVEMFGR----------NATDGWTEVANKMLDTSFTQRGLVPG 585
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
+TY F+VRA N+HG+S PSP+S+ I++ G+ N G + A
Sbjct: 586 VTYYFVVRAENAHGISLPSPMSEPIMV--------------GMNELN-----SGLDMSEA 626
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDP--PASVAMLTV 593
R L G ++EL + S+S+KL WEI+N Y+EG YIY+R LD + MLTV
Sbjct: 627 RASLL--SGDVVELVNATSVDSSSMKLVWEIINGKYVEGFYIYARDLDEDFERTYKMLTV 684
Query: 594 LHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL 653
L+AG S V+GL + YEFF+VPF+ +V+GKPSN R RTLE PS P + +LL
Sbjct: 685 LNAGSVSSCTVSGLHKFREYEFFIVPFYKTVEGKPSNSRIARTLEDVPSAPPTAMEALLL 744
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGG----GNNSALI-NMTVSASTPTLLLTNLSA 708
N+++V LKWK PP+G+ NG++RTY ++V G N S L+ N+T+ AS+P LLL NL+
Sbjct: 745 NSSAVYLKWKAPPIGSINGILRTYHVLVRGVDLRSNYSKLLSNVTIDASSPNLLLANLTE 804
Query: 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTG 768
G+ Y+VS+AA G GP+S PA L RL+ Q +S ++ + G
Sbjct: 805 GVTYTVSMAAATELGMGPFSNPATL--------RLDPVTKQLDQS----SVRYPINHEVG 852
Query: 769 GAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSL 810
L+ PWFIA+L +++A+M + F AM FV+R+ + K+S+L
Sbjct: 853 DDILTKPWFIAVLGTILALMMVSFGAMVFVKRKQMMMKQSAL 894
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157127854|ref|XP_001661212.1| roundabout [Aedes aegypti] gi|108872774|gb|EAT36999.1| AAEL010961-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/863 (43%), Positives = 528/863 (61%), Gaps = 71/863 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+S+LRE+FR++P++ RVA G+TALLECGPPRG+PEP + W+KNG +D NSKR+R+VDG
Sbjct: 120 VSVLREDFRLEPQNTRVAQGETALLECGPPRGYPEPVVFWRKNGQTLDLNNSKRIRIVDG 179
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQ++R++DDGRYQCV KNV G REST A LRV VKP+++RGP++ T S +VF+
Sbjct: 180 GNLAIQEARQSDDGRYQCVAKNVVGVRESTVAFLRVHVKPFLMRGPQNQTAVVGSSVVFQ 239
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD V V W+R S+ MP DR+ VL RSLQ+ + +ED GEY CEA+NAVG I+
Sbjct: 240 CRVGGDPVPDVLWRRSASSGNMPLDRVHVLEDRSLQIDGITIEDMGEYSCEADNAVGSIT 299
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
AS +LTV P RP + E+G +A+F C G P P+ FW LEGNR+L++PG R
Sbjct: 300 ASGSLTVHSPPSFTVRPMNQIAELGSEALFECQATGHPEPTLFWSLEGNRTLLFPGYRYG 359
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
I+ +DG ++L + N+ R +ILC VN+ GS R L+V+ D PPP+IL
Sbjct: 360 GIEVTENADGTSILSVSNIDRIDNSKVILCSAVNSVGSVSTRVVLSVNLQDDRPPPLILQ 419
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-ED 355
GP NQTLP++S A L C+ G + + W+R V + R+N+T G+L ++D++K +D
Sbjct: 420 GPVNQTLPVKSVAILPCKAAGVPTPVISWYRDGIPVLTSSRINITDSGTLTISDLSKNDD 479
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
SG YTCV S G ++WSASL+ + PTNPNI FFRAPE ST+PGPP KP + + + + +T
Sbjct: 480 SGLYTCVASSKSGKSTWSASLKLDLPTNPNIKFFRAPEASTFPGPPGKPQVTDVSESAVT 539
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
++W +N +G+SS++G+ VEMY R + T W +A + T L G
Sbjct: 540 ISWVPSNALGASSMVGFIVEMYGRNI----------TDGWQEMAEKIKDTSYTQRGLIPG 589
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
+TY F+VRA N HG+S PSPLS+ I++ G+ N G +
Sbjct: 590 VTYYFVVRAENWHGISPPSPLSEPILV--------------GVNEMN-----SGLDMSEI 630
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGL--DPPASVAMLTV 593
R L G ++EL + ST++KL WEI++ Y++G YIY+R L D S +LTV
Sbjct: 631 RATLLS--GDVVELVNATSVDSTTMKLVWEIIDGKYVDGFYIYARNLEEDSEHSYRVLTV 688
Query: 594 LHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL 653
L+AG S V L ++ YEFF+VPF+ +V+GKPSN R +TLE PS P + +LL
Sbjct: 689 LNAGSVSSCTVNDLRKFTEYEFFIVPFYKTVEGKPSNSRLAKTLEDVPSASPTGMEALLL 748
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-----NSALINMTVSASTPTLLLTNLSA 708
N+++V LKWK PP+G+ NG+++TY +IV G + L N+T+ A++P LLL NL+
Sbjct: 749 NSSAVYLKWKAPPLGSINGILQTYHVIVRGVDIRSNYTKVLSNVTIDATSPNLLLANLTE 808
Query: 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTG 768
G+ Y+VS+AA AG GP+S PA L L +P + S R + D+
Sbjct: 809 GVTYTVSIAAATTAGMGPFSSPATLRL----DPVTKQLDQTSHRYPINHDNADDI----- 859
Query: 769 GAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLD--HNSAGPGLLATPISL 826
L+ PWFIA+L +++A+M L F AM FV+R+ + K+S+L G G+L P
Sbjct: 860 ---LTKPWFIAVLGTILALMMLSFGAMVFVKRKQMLMKQSALVALRGHHGTGVLKFP--- 913
Query: 827 KAASGLPHPGGGLTTANEGLWID 849
L N+G W D
Sbjct: 914 -----------SLPQNNDGYWTD 925
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|374637166|gb|AEZ54712.1| Robo2/3-like protein, partial [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/840 (44%), Positives = 506/840 (60%), Gaps = 51/840 (6%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR+EFR++P+S RVAAG+ ++EC PPRG PEP + W+K+GH ++ E RL+LVDG
Sbjct: 97 VAVLRDEFRLEPQSTRVAAGEDIVMECAPPRGTPEPQVFWRKDGHTLEVEG--RLKLVDG 154
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+NLAI D++ +DDGRYQCV KN AG RES A+L+V VKP++I+ P+D T S + F
Sbjct: 155 SNLAITDTKPSDDGRYQCVAKNTAGVRESAVAILKVYVKPFLIKPPEDKTALVGSTVDFP 214
Query: 121 CSVGGDAVLTVHWKR--LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C+VGGD + V W+R G MP R+ VL R+L+L + L D G Y CEA+N G I+
Sbjct: 215 CAVGGDPLPDVLWRRNAAGGTMPLGRVRVLEDRTLRLERITLLDQGRYTCEADNYAGAIT 274
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
A+A LTV P + RP +E RD F C +EGSP P FW EG+R+LIYPG
Sbjct: 275 ATALLTVHAPPTLTTRPLAQTVESNRDVSFHCNVEGSPKPFIFWSFEGDRTLIYPGTSTG 334
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
N Q T +G + L ++ + +I+C VNAAGS R LTV+ + +PPPVI+
Sbjct: 335 NYQV-TTVEGKSTLTLKQAQPQNSGTVIICSAVNAAGSASTRTRLTVTSREEHPPPVIIR 393
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDS 356
GP NQTLP+ S A L C+ G + + W++ V S R+N T G + + ++ K+DS
Sbjct: 394 GPVNQTLPINSVAFLSCEASGNPTPVISWYKENHPVTSTNRINTTNPGLVEIHNLQKDDS 453
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
G YTCV S G A+WS L E+P NPNI FF+APE PGPP++P +NQ+ +T+
Sbjct: 454 GLYTCVASSRSGKATWSGHLLVENPKNPNINFFKAPEAIMLPGPPSRPHALNQSEGSVTI 513
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
W +NN+IGSSSLLGYQ+E++ R + T TW VA V P T L+ +
Sbjct: 514 TWGQNNKIGSSSLLGYQIELFGR--------EEGVTPTWTVVARRVQGPTYTQHLLSPSV 565
Query: 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536
YTFLVRA N HGL PS LSD I++ G + + + SE AR
Sbjct: 566 PYTFLVRAENGHGLGPPSQLSD-IIIVGPDTAQNWGNPEVTVLSE-------------AR 611
Query: 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASV----AMLT 592
L + G ++ L+E P+ ST++KL WEIL+ Y+EG+YIY LD P+ + +MLT
Sbjct: 612 ASLVK--GDIVRLSEAIPVLSTAIKLVWEILDAQYVEGLYIYYVTLDGPSDLPKPYSMLT 669
Query: 593 VLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVL 652
VLH G AS F V LA +SRYEFFLVPF+ +V+G+PSN R VRTLE P P + +L
Sbjct: 670 VLHTGGASSFTVNNLAKWSRYEFFLVPFYKTVEGQPSNSRTVRTLEDVPVEAPTSMEALL 729
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
LN+T+V LKWKPPP T NG ++ Y+I + N + + +TPTLLL NL+AG+ Y
Sbjct: 730 LNSTAVYLKWKPPPSETLNGDLQGYKIEI-KANGTGTTDTVTVGTTPTLLLGNLTAGVAY 788
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWL 772
+V +AA RAG GP+S A+L L P R D Q D+ G ++
Sbjct: 789 TVKVAAMTRAGLGPFSSAAILRL--DPASRHNDHHHQKP------------IDMQSGDFI 834
Query: 773 SAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAGPGLLATPISLKAASGL 832
+ WF+ALL SMV+VM LLF AM VRRR + KK+ S G +L TP++ K + L
Sbjct: 835 TETWFMALLISMVSVMVLLFGAMLLVRRRQMLTKKTLTPSRSNG-AVLTTPLASKTETPL 893
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91089505|ref|XP_970268.1| PREDICTED: similar to roundabout [Tribolium castaneum] gi|270012817|gb|EFA09265.1| robo3 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/840 (44%), Positives = 506/840 (60%), Gaps = 51/840 (6%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR+EFR++P+S RVAAG+ ++EC PPRG PEP + W+K+GH ++ E RL+LVDG
Sbjct: 167 VAVLRDEFRLEPQSTRVAAGEDIVMECAPPRGTPEPQVFWRKDGHTLEVEG--RLKLVDG 224
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+NLAI D++ +DDGRYQCV KN AG RES A+L+V VKP++I+ P+D T S + F
Sbjct: 225 SNLAITDTKPSDDGRYQCVAKNTAGVRESAVAILKVYVKPFLIKPPEDKTALVGSTVDFP 284
Query: 121 CSVGGDAVLTVHWKR--LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C+VGGD + V W+R G MP R+ VL R+L+L + L D G Y CEA+N G I+
Sbjct: 285 CAVGGDPLPDVLWRRNAAGGTMPLGRVRVLEDRTLRLERITLLDQGRYTCEADNYAGAIT 344
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
A+A LTV P + RP +E RD F C +EGSP P FW EG+R+LIYPG
Sbjct: 345 ATALLTVHAPPTLTTRPLAQTVESNRDVSFHCNVEGSPKPFIFWSFEGDRTLIYPGTSTG 404
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
N Q T +G + L ++ + +I+C VNAAGS R LTV+ + +PPPVI+
Sbjct: 405 NYQV-TTVEGKSTLTLKQAQPQNSGTVIICSAVNAAGSASTRTRLTVTSREEHPPPVIIR 463
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDS 356
GP NQTLP+ S A L C+ G + + W++ V S R+N T G + + ++ K+DS
Sbjct: 464 GPVNQTLPINSVAFLSCEASGNPTPVISWYKENHPVTSTNRINTTNPGLVEIHNLQKDDS 523
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
G YTCV S G A+WS L E+P NPNI FF+APE PGPP++P +NQ+ +T+
Sbjct: 524 GLYTCVASSRSGKATWSGHLLVENPKNPNINFFKAPEAIMLPGPPSRPHALNQSEGSVTI 583
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
W +NN+IGSSSLLGYQ+E++ R + T TW VA V P T L+ +
Sbjct: 584 TWGQNNKIGSSSLLGYQIELFGR--------EEGVTPTWTVVARRVQGPTYTQHLLSPSV 635
Query: 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536
YTFLVRA N HGL PS LSD I++ G + + + SE AR
Sbjct: 636 PYTFLVRAENGHGLGPPSQLSD-IIIVGPDTAQNWGNPEVTVLSE-------------AR 681
Query: 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASV----AMLT 592
L + G ++ L+E P+ ST++KL WEIL+ Y+EG+YIY LD P+ + +MLT
Sbjct: 682 ASLVK--GDIVRLSEAIPVLSTAIKLVWEILDAQYVEGLYIYYVTLDGPSDLPKPYSMLT 739
Query: 593 VLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVL 652
VLH G AS F V LA +SRYEFFLVPF+ +V+G+PSN R VRTLE P P + +L
Sbjct: 740 VLHTGGASSFTVNNLAKWSRYEFFLVPFYKTVEGQPSNSRTVRTLEDVPVEAPTSMEALL 799
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
LN+T+V LKWKPPP T NG ++ Y+I + N + + +TPTLLL NL+AG+ Y
Sbjct: 800 LNSTAVYLKWKPPPSETLNGDLQGYKIEI-KANGTGTTDTVTVGTTPTLLLGNLTAGVAY 858
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWL 772
+V +AA RAG GP+S A+L L P R D Q D+ G ++
Sbjct: 859 TVKVAAMTRAGLGPFSSAAILRL--DPASRHNDHHHQKP------------IDMQSGDFI 904
Query: 773 SAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAGPGLLATPISLKAASGL 832
+ WF+ALL SMV+VM LLF AM VRRR + KK+ S G +L TP++ K + L
Sbjct: 905 TETWFMALLISMVSVMVLLFGAMLLVRRRQMLTKKTLTPSRSNG-AVLTTPLASKTETPL 963
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157114558|ref|XP_001658079.1| roundabout [Aedes aegypti] gi|108877237|gb|EAT41462.1| AAEL006901-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/915 (41%), Positives = 525/915 (57%), Gaps = 67/915 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LRE+FR++P+S RVA G+T LLECGPP+G PEPT+ W+KNG +D E+SKR+R+VDG
Sbjct: 176 VAVLREDFRLEPQSTRVAQGETVLLECGPPKGIPEPTVAWRKNGQKLDVESSKRIRVVDG 235
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQD R+TD+G+YQC+ +N G RES A L+V VKP++IRGP D+T+ S + F+
Sbjct: 236 GNLAIQDVRQTDEGQYQCIARNQVGVRESAVAFLKVHVKPFLIRGPHDSTIVEGSSVTFQ 295
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD + V W+R S MP DR+ +L RSL+L +V L+D GEY CEA+NAVG IS
Sbjct: 296 CRVGGDPMPDVLWRRSASGGNMPLDRVHILEDRSLRLENVVLDDEGEYSCEADNAVGTIS 355
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
A+ TL V P + RP +E DA F C EG P P+TFW +EGNR+LI+PG + D
Sbjct: 356 ATGTLNVHSPPHLVIRPVQQVVEAPHDATFECRSEGRPKPTTFWSIEGNRTLIFPGSKFD 415
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+ T +G+++L I ++ LI++C VN+ GS RA LTV+ D PPP+I+
Sbjct: 416 RFETSTTVEGLSVLTIPQTTKADNGLIVVCSSVNSVGSISVRARLTVASQDDRPPPIIIL 475
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKE-D 355
GP+NQTLPL S L C+ G + + W+ V + R N+T +G+L++ D+ K D
Sbjct: 476 GPSNQTLPLGSVVALPCKAVGNPNPIISWYLDGNPVINSERTNMTDNGTLIIHDLDKSTD 535
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
G YTCV S G A+WSA LR ESPTNPNI FFRA EPS +P P KP +VN T + +T
Sbjct: 536 QGLYTCVASSRSGKATWSAYLRLESPTNPNIHFFRAHEPSAFPTAPGKPQVVNVTNSSIT 595
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
++W + + G+S + GY +E+++ D A W+ + + S T + +T
Sbjct: 596 ISWLPSIKSGASDINGYLIEVFAT---------DMAKG-WIPIPYKLSSTSYTYSPVTAD 645
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
++YTF+VRA N GL PS +SD + + F+ GE + +
Sbjct: 646 VSYTFIVRAENDQGLGIPSLMSDPVTIGRDFNH--------------------GEDINLS 685
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLH 595
GS++ L E S+SV+L WEI+N Y+EG YIYSR ++ + LTVLH
Sbjct: 686 EAQATLSSGSVVNLLEANASDSSSVRLAWEIVNGQYVEGFYIYSRQINSNGTYKTLTVLH 745
Query: 596 AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNA 655
G AS + GL Y+ YEFFLVPFF +++G+PSN R TLE PS P + VLLN
Sbjct: 746 GGGASACTINGLEKYTEYEFFLVPFFKTIEGRPSNSRTTWTLEDVPSASPVNMEAVLLNT 805
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVGGGN----NSALINMTVSASTPTLLLTNLSAGIR 711
++V LKW+PP + NG ++ Y II+ G + + L NMTV +P LLL NLSAG+
Sbjct: 806 SAVYLKWEPPANHSLNGKLKNYHIIIRGYDIHNISKVLTNMTVDGDSPKLLLANLSAGVT 865
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAW 771
YSVS+AA+ R G GPYS P++L L +P + R + D+
Sbjct: 866 YSVSIAASTRVGMGPYSAPSILRL----DPHTKRLDQGYTRYPINHDYSHDI-------- 913
Query: 772 LSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDHNSAGPGLLATPISLKAASG 831
L+ WFI LL S++A++ LF A RR K SSL+ N G + T ++
Sbjct: 914 LTQTWFIILLGSIIAIIVFLFGATVIFRRIQF-MKHSSLN-NMHGNHAIGT---VRKFPT 968
Query: 832 LP-HPGGGLTTANEGLWIDGKAGAGLSHPGGGLTTANQWMDGGSTRATGWRTGEGQVLLP 890
LP +P G+WID G G+ +T + A + + L P
Sbjct: 969 LPLNP--------NGVWID--PGGGVWRQASEITKEAITDYAAVSNAPTLPLPDYERLSP 1018
Query: 891 HAQPDYAEVAASGAL 905
PDYAEVA +
Sbjct: 1019 LNMPDYAEVAGCSSF 1033
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157109915|ref|XP_001650879.1| roundabout [Aedes aegypti] gi|108868400|gb|EAT32625.1| AAEL015183-PA, partial [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/820 (42%), Positives = 491/820 (59%), Gaps = 52/820 (6%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
++LRE+FR++P+S RVA G+T LLECGPP+G PEPT+ W+KNG +D E+SKR+R+VDG
Sbjct: 12 AVLREDFRLEPQSTRVAQGETVLLECGPPKGIPEPTVAWRKNGQKLDVESSKRIRVVDGG 71
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
NLAIQD R+TD+G+YQC+ +N G RES A L+V VKP++IRGP D+T+ S + F+C
Sbjct: 72 NLAIQDVRQTDEGQYQCIARNQVGVRESAVAFLKVHVKPFLIRGPHDSTIVEGSSVTFQC 131
Query: 122 SVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
VGGD + V W+R S MP DR+ +L RSL+L +V L+D GEY CEA+NAVG ISA
Sbjct: 132 RVGGDPMPDVLWRRSASGGNMPLDRVHILEDRSLRLENVVLDDEGEYSCEADNAVGTISA 191
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+ TL V P + RP +E DA F C EG P P+TFW +EGNR+LI+PG + D
Sbjct: 192 TGTLNVHSPPHLVIRPVQQVVEAPHDATFECRSEGRPKPTTFWSIEGNRTLIFPGSKFDR 251
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG 299
+ T +G+++L I ++ LI++C VN+ GS RA LTV+ D PPP+I+ G
Sbjct: 252 FETSTTVEGLSVLTIPQTTKADNGLIVVCSSVNSVGSISVRARLTVASQDDRPPPIIILG 311
Query: 300 PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKE-DS 356
P+NQTLPL S L C+ G + + W+ V + R N+T +G+L++ D+ K D
Sbjct: 312 PSNQTLPLGSVVALPCKAVGNPNPIISWYLDGNPVINSERTNMTDNGTLIIHDLDKSTDQ 371
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
G YTCV S G A+WSA LR ESPTNPNI FFRA EPS +P P KP +VN T + +T+
Sbjct: 372 GLYTCVASSRSGKATWSAYLRLESPTNPNIHFFRAHEPSAFPTAPGKPQVVNVTNSSITI 431
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
+W + + G+S + GY +E+++ + W+ + + S T + +T +
Sbjct: 432 SWLPSIKSGASDINGYLIEVFATDMAKG----------WIPIPYKLSSTSYTYSPVTADV 481
Query: 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536
+YTF+VRA N GL PS +SD + + F+ GE + +
Sbjct: 482 SYTFIVRAENDQGLGIPSLMSDPVTIGRDFNH--------------------GEDINLSE 521
Query: 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHA 596
GS++ L E S+SV+L WEI+N Y+EG YIYSR ++ + LTVLH
Sbjct: 522 AQATLSSGSVVNLLEANASDSSSVRLAWEIVNGQYVEGFYIYSRQINSNGTYKTLTVLHG 581
Query: 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT 656
G AS + GL Y+ YEFFLVPFF +++G+PSN R RTLE PS P + VLLN +
Sbjct: 582 GGASACTINGLEKYTEYEFFLVPFFKTIEGRPSNSRTARTLEDVPSASPVNMEAVLLNTS 641
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGN----NSALINMTVSASTPTLLLTNLSAGIRY 712
+V LKW+PP + NG ++ Y II+ G + + L NMTV +P LLL NLSAG+ Y
Sbjct: 642 AVYLKWEPPANHSLNGKLKNYHIIIRGYDIHNISKVLTNMTVDGDSPKLLLANLSAGVTY 701
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWL 772
SVS+AA+ R G GPYS P++L L +P + R + D+ L
Sbjct: 702 SVSIAASTRVGMGPYSAPSILRL----DPHTKRLDQGYTRYPINHDYSHDI--------L 749
Query: 773 SAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLDH 812
+ WFI LL S++A++ LF A RR K SSL++
Sbjct: 750 TQTWFIILLGSIIAIIVFLFGATVIFRRIQF-MKHSSLNN 788
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008680|ref|XP_002425130.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis] gi|212508804|gb|EEB12392.1| roundabout 1, 2, 3, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/744 (45%), Positives = 483/744 (64%), Gaps = 40/744 (5%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LRE+FR P + RVA G+TALLECGPP+GHPEP + WKKNGH ID + +KR R+VDG
Sbjct: 76 LAVLREDFRAFPHNTRVALGETALLECGPPKGHPEPVVFWKKNGHVIDLDKNKRFRIVDG 135
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQD R++DDG+YQC+ KNV GTRES A+L++ VKP+II+GP D V A + + F+
Sbjct: 136 GNLAIQDVRQSDDGKYQCLAKNVVGTRESATALLKIHVKPFIIKGPVDAVVLAGNSVDFQ 195
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD + V W+R A MP ++ + RSL+L +V ED GEY CEA+N VG IS
Sbjct: 196 CKVGGDPLPDVLWRRTAGAGNMPLGKVHITDDRSLRLDNVTPEDEGEYTCEADNDVGMIS 255
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
ASATL V + ++ DA F CG +G+P PS FW +EGNRSL +PG +VD
Sbjct: 256 ASATLVVYYQIV----------DLETDAQFECGADGNPRPSLFWSVEGNRSLYFPGAKVD 305
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+A T +G LL + + ++ + ++++C VN AGS +A L V P+ +PPPVI+
Sbjct: 306 RFKASNTPEGRILLTLHSATQNDSGIVVICSAVNPAGSASWKAKLIVMSPEDHPPPVIIQ 365
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSG-PRVNVTGDGSLVLTDVTKED 355
GP NQTLP+++ C+ G S + W+R + SG ++N++ G+LV+ ++ + D
Sbjct: 366 GPMNQTLPIKTIGIFPCRAIGNPSPIISWYRNGVPLVSGRDKINISESGNLVIQELERSD 425
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
+G YTCV S G ++W+A LR ESP NPNI FFRAP+ ST+PG P++P +VN+T +
Sbjct: 426 AGYYTCVASSVSGKSTWAAQLRVESPMNPNINFFRAPDASTFPGAPSRPQIVNKTQDSAA 485
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
+ W+R+ +IG+SSLLGYQ+E++SR +S+ + + W+ A V P +L G
Sbjct: 486 ITWTRSPKIGASSLLGYQIELFSR--ETSTRNSSVNSGGWIISARRVSGPTYIQQHLQPG 543
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
LTY FL+RA NSHG + P++ E+ + + + +E + L+ A
Sbjct: 544 LTYRFLIRAENSHGCAVSEPVAIEVGNKKSLEDEDENEDER--------------LLKEA 589
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLD----PPASVAML 591
+ L +++L E ++STS+KL WEILN++++EG YIYSR LD S +ML
Sbjct: 590 KSTL--FSSHVVDLVEAVAVSSTSIKLVWEILNSEFVEGFYIYSRALDGGNRGADSYSML 647
Query: 592 TVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV 651
TV AG A GF VTGLA Y+RYEFFLVPF+ +VDGKPSN + +TLE PS P + +
Sbjct: 648 TVSQAGGALGFQVTGLAKYTRYEFFLVPFYKTVDGKPSNSKTTKTLEDVPSEPPIHMEAI 707
Query: 652 LLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711
LLN+T+V L+WKPPP T NG+IR+Y ++V G + L N++V+ ++P+LLLTNL+AGI
Sbjct: 708 LLNSTAVHLRWKPPPTHTQNGIIRSYLVVVEG---NGLNNLSVTTTSPSLLLTNLTAGIT 764
Query: 712 YSVSLAATNRAGTGPYSRPALLSL 735
Y+V AA + G GP+S PA L L
Sbjct: 765 YNVRAAACTKPGVGPFSSPASLRL 788
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357616961|gb|EHJ70508.1| putative roundabout [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/923 (39%), Positives = 522/923 (56%), Gaps = 67/923 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LREEFR++P + + A G+T +LEC PPRG PEPT+ WKK+G + F+ R+ LVDG
Sbjct: 125 VAVLREEFRLEPVTSQTAQGETVILECSPPRGSPEPTVYWKKDGQILHFDGDSRMHLVDG 184
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+L IQD+ +TD GRYQC+ +N AGTRES+ A LR+ +KPY+I GP+D + F+
Sbjct: 185 GSLVIQDATQTDAGRYQCIARNAAGTRESSIATLRIHIKPYLIAGPEDIVAQTGGSVTFK 244
Query: 121 CSVGGDAVLTVHWKRL--GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD + V W+R G MP R+ VL RSL+L +V L D GEY CEA+NAVG +S
Sbjct: 245 CRVGGDPLPDVLWRRTAGGGNMPLGRVKVLDDRSLRLDNVILTDEGEYTCEADNAVGAVS 304
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
A+ LTV P V +PS + +E G F C G P + FW LEGNR++I PG
Sbjct: 305 ATGYLTVYDPPTVTLKPSSVIVESGTSVTFTCMSTGKPQATMFWSLEGNRTIILPGTSKG 364
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
A D + L I N S+ + ++C VN AGS R ++V+ D PPP+I
Sbjct: 365 KYHASPVLDNVTRLTINNTSKNESGNTVVCSAVNFAGSSFIRGKISVTTDDDRPPPIITN 424
Query: 299 GPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDS 356
GP+NQTLP++S A C G E + W+ + R N++ DG+L L D+ KEDS
Sbjct: 425 GPSNQTLPIKSMAVFPCAAIGTPEPIIAWYFEGEALIQNQRRNISSDGTLTLRDLDKEDS 484
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
G YTCV S HG WS L +SPTNPNI FFRA + S PG PTKP N T +TL
Sbjct: 485 GTYTCVASSQHGKYVWSGVLLVDSPTNPNIHFFRAADTSALPGRPTKPITYNITDTSVTL 544
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
W++NN+IGSSS++GYQ+EM+SR S + + WV V+ V V +L G+
Sbjct: 545 TWNQNNKIGSSSIIGYQIEMFSRETLSGKNTPRNSRG-WVVVSKRVYQTHFVVKSLIPGI 603
Query: 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536
TY F+VRA NSHGLSAPS +SD I + G + G++ EG G+F+ N R
Sbjct: 604 TYMFMVRAENSHGLSAPSLVSDAITV-GDDTNGLW-EG--GLFANN----------TEYR 649
Query: 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPA-SVAMLTVLH 595
+++ ++++L E P+ S ++KL WEILN Y+EG++IY R LD M T+LH
Sbjct: 650 KNIMT--DNIVDLIEATPIDSKTIKLMWEILNFFYLEGLFIYYRPLDNKTIDYEMKTILH 707
Query: 596 AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNA 655
+ + SG+ +T L Y +YEFFLVPF+ +GKPSN R +TL+ P G P + +LN
Sbjct: 708 SNDVSGYEITTLRKYMKYEFFLVPFYKKFEGKPSNSRIAQTLDDVPDGPPTNIEMYILNV 767
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVGG----GNNSAL-INMTVSASTPTLLLTNLSAGI 710
T+V LKW PP NGV+ Y +++ N S + IN TV +T +L++TNL++G+
Sbjct: 768 TTVHLKWHPPEPDLQNGVVIGYNVVLNWLDIPANKSMIAINTTVYQAT-SLIMTNLTSGV 826
Query: 711 RYSVSLAATNRAGTGPYSRPALLSLTS---GPEPRLEDWASQSGRSRGDGTMETDLTDLT 767
YSV +AA G GP+S+ L++ S G +P R +G + +
Sbjct: 827 SYSVQIAAETIVGLGPFSQKVYLNIDSRSVGLDPL--------SRYPNNGEVS-----IV 873
Query: 768 GGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLD--HNSAGPGLLATPIS 825
G ++ WF L+ ++V ++ + +VRR + AKKS+L +NS G L+ T ++
Sbjct: 874 AGDFVMETWFYFLIGAIVLFKVIMIAGIIYVRRHNIFAKKSALPNIYNSNGTSLV-TQMN 932
Query: 826 LKAASGLPHP------GGGLTTANEGLWIDGKAGAGLSHPGGGLTTANQWMDGGSTRATG 879
+KAA L HP +T LW++ + G +S G T +
Sbjct: 933 IKAAVSLSHPLSSCYNKNSVTKTESLLWMENQPGLCMS--------------GNQTSQSK 978
Query: 880 WRTGEGQVLLPHAQPDYAEVAAS 902
+T + H P+YAEV AS
Sbjct: 979 EKTNSEYDKVSHQLPEYAEVTAS 1001
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195433867|ref|XP_002064928.1| GK14947 [Drosophila willistoni] gi|194161013|gb|EDW75914.1| GK14947 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/828 (42%), Positives = 508/828 (61%), Gaps = 62/828 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN-SKRLRLVD 59
++ LR+EFR++P++ RVA G+ AL+ECG PRG PEP + W+KNG ++ +KR+R+VD
Sbjct: 193 VAFLRDEFRLEPQNTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLSGGNKRIRIVD 252
Query: 60 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVF 119
G NLAIQD+R++DDGRYQCVVKNV G RES A L+V V+P++IRGP++ T S +VF
Sbjct: 253 GGNLAIQDARQSDDGRYQCVVKNVVGIRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVF 312
Query: 120 ECSVGGDAVLTVHWKRL--GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
+C +GGD + V W+R G MP R+ +L RSL+L DV LED GEY CEA+NAVG I
Sbjct: 313 QCRIGGDPLPDVLWRRAASGGHMPLSRVRILEDRSLKLDDVTLEDMGEYSCEADNAVGSI 372
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+A++ LTV P RP + +E+G + +F C G P P+ +W +EGN SL+ PG R
Sbjct: 373 TATSVLTVHAPPKFVIRPKNQLVEIGDEVLFECQASGHPRPTLYWSVEGNSSLLLPGYRD 432
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
++ +T +G ++L I +R + +++C +NA GS +R ++V PPP+I
Sbjct: 433 GRLEVTLTPEGRSVLSITRFAREDSGKVVVCNALNAVGSVSSRTVVSVDTQFELPPPIIE 492
Query: 298 FGPANQTLPLRSEARLRCQVRGEGS--VQWWRG--EREVGSGPRVNVTGDGSLVLTDVTK 353
GP NQTLP++S L C+ G + + W+ +V R N+T GSL ++D+ +
Sbjct: 493 QGPVNQTLPVKSIVVLPCRTLGSPAPEISWYLDGIPIDVQEHERRNLTDSGSLTISDLQR 552
Query: 354 -EDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
ED G YTCV + +G +SWS LR ++PTNPNI F+RAPE STYPGPP KP LV + +
Sbjct: 553 HEDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFYRAPELSTYPGPPGKPQLVEKGED 612
Query: 413 GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
LTL+W+R+N++G SSL+GY +EM+ G T W+ VAT V + T L
Sbjct: 613 SLTLSWTRSNKVGGSSLVGYVIEMF----------GKNETDGWMAVATRVQNTTYTQLGL 662
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532
G+ Y FL+RA NSHGLS PSP+S+ I + G F+ G L
Sbjct: 663 VPGVNYFFLIRAENSHGLSLPSPMSEPITV------------GTRYFNS-------GLDL 703
Query: 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVA--- 589
AR L G ++ELT + STS+KLTW+I+N Y+EG YIY PP++ +
Sbjct: 704 SEARASLL--SGDVVELTNASVVDSTSMKLTWQIINGKYVEGFYIYQ---SPPSTFSTKY 758
Query: 590 -MLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLT 648
MLT+L+ G AS +TGL Y+ YEFF+VPF+ SV+GKPSN R RTLE P+ P
Sbjct: 759 RMLTILNGGGASSCTLTGLLQYTLYEFFIVPFYKSVEGKPSNSRVARTLEDVPNEAPFGM 818
Query: 649 DPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-----LINMTVSASTPTLLL 703
+ VLLN+++V LKWK P + +G++ Y +IV G + + L N+T+ A++PTL+L
Sbjct: 819 EAVLLNSSAVFLKWKAPEMKAQHGILLNYHVIVRGIDTAHNFSRILTNVTIDAASPTLVL 878
Query: 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDL 763
NL+ G+ Y+V +AA N AG GPY PA L L + RL+ + +Q D +
Sbjct: 879 ANLTEGVMYTVGVAAGNNAGVGPYCTPATLRLDPITK-RLDPFINQRYPINQDHVNDV-- 935
Query: 764 TDLTGGAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKSSLD 811
L+ PWFI LL +++A++ L F AM FV+R+ + K+S+L+
Sbjct: 936 --------LTQPWFIILLGAILAILMLSFGAMVFVKRKHMMMKQSALN 975
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194759230|ref|XP_001961852.1| GF15179 [Drosophila ananassae] gi|190615549|gb|EDV31073.1| GF15179 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1650), Expect = e-180, Method: Compositional matrix adjust.
Identities = 376/938 (40%), Positives = 528/938 (56%), Gaps = 76/938 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR+EFR++P++ R+A GDTALLEC PPRG PEPT+ WKK G +D E SKR+R+VDG
Sbjct: 116 VAVLRDEFRLEPQNTRIAQGDTALLECAPPRGIPEPTVTWKKGGQKLDLEGSKRIRIVDG 175
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQD+R+TD+G+YQC+ KN G RES+ A L+V VKPYIIRGP D TV + + F
Sbjct: 176 GNLAIQDARQTDEGQYQCIAKNPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFP 235
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD + V W R S MP DR+SVL RSL+L V + D GEY CEA+N VG I+
Sbjct: 236 CRVGGDPMPDVLWLRTASGGNMPLDRVSVLEDRSLRLERVTIADEGEYSCEADNVVGAIT 295
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD-RV 237
A TLTV P +RP+ +E+G D F C G+P P+ FW ++ N +LI+PG +
Sbjct: 296 AMGTLTVYAPPKFIQRPTSKSVELGADTSFECRATGNPKPTIFWTIKNNSTLIFPGAPPL 355
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
D + T +G ++L + RT L+ILC +N S +R L++ + PPP+I+
Sbjct: 356 DRFHSLNTEEGHSILTLTRFQRTDKDLVILCNAMNEVASITSRVQLSLDSQEDRPPPIII 415
Query: 298 FGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-E 354
GP NQTLP++S A L+C+ G ++ W+R V ++N+T G L+++D+ + +
Sbjct: 416 AGPVNQTLPIKSLATLQCKAIGLPNPTISWYRDGIPVQPSSKLNITTAGDLIISDLDRQQ 475
Query: 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL 414
D G YTCV S G ++WS LR E PTNPNI F+RAPE S P P +P ++N T++ L
Sbjct: 476 DQGLYTCVASSRAGKSTWSGFLRIELPTNPNIKFYRAPEQSKCPTAPGQPKVLNATSSAL 535
Query: 415 TLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
T+ W +++ G+SS LGY VEMY + TW+ +A+ + PI TV +LT
Sbjct: 536 TIVWPTSDKAGASSFLGYSVEMYC----------TNQSKTWIPIASRLSEPIFTVESLTQ 585
Query: 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRR 534
G Y F+VRA NS G S PSP+S+ I GK + + D L
Sbjct: 586 GAAYMFIVRAENSLGFSPPSPISEPIT------------AGKLVGVRDGSDNSGTSQLLL 633
Query: 535 ARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVL 594
+ ++E+ E ST+V+L+W+I + YIEG Y+Y+R L MLT+L
Sbjct: 634 SDVETLLQANDIVEILEANASDSTTVRLSWDIDSGQYIEGFYLYARELH-STEYKMLTLL 692
Query: 595 HAGEA-SGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL 653
+ G+ S V GLA S YEFFLVPF+ S+ GKPSN R VRTLE P P + +
Sbjct: 693 NKGQGLSSCTVPGLAKASTYEFFLVPFYKSIVGKPSNSRRVRTLEDVPEAPPYGMEAIQF 752
Query: 654 NATSVLLKWKPP-PVGTHNGVIRTYQIIVGG--GNNSALI--NMTVSASTPTLLLTNLSA 708
N TSV LKW PP P T NG++ +Y ++V G +N+ I NMT+ A+TPTLLL NL+
Sbjct: 753 NRTSVFLKWLPPQPNRTRNGILTSYNVVVKGLDVHNTTRIFKNMTIDAATPTLLLANLTT 812
Query: 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTG 768
G+ Y +++AA R G GP+S+PA+L + + + + +G +R + D+ D
Sbjct: 813 GVTYYIAVAAATRVGVGPFSKPAVLRIDARTQ------SLDTGYTR--YPISRDIAD--- 861
Query: 769 GAWLSAPWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKS--SLDHNSAGPGLLATPI-- 824
+L+ WFI LL S++A++ L A+ +R + S SL N A + P
Sbjct: 862 -DFLTQTWFIVLLGSIIAIIVFLLGALVLFKRYQFIKQTSLGSLHGNHAIGTVRKFPTLP 920
Query: 825 -------------SLKAASGLPHPGGGLTTANEGLWIDGKAGAGLSHPGGGLTTANQWMD 871
S AA+G P G G+W G G + GG +T Q
Sbjct: 921 LNGGGAVGAVGSNSTVAATG---PNGLWIDPTGGVWRQGDRSTGAGNGGGTCSTKEQL-- 975
Query: 872 GGSTRATGWRTGEGQVLLPHAQ-------PDYAEVAAS 902
G +AT + LLP + PDYAEVA S
Sbjct: 976 PGYAQATAQQGQHPPTLLPDYERLSPLNMPDYAEVACS 1013
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Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 977 | ||||||
| FB|FBgn0002543 | 1463 | lea "leak" [Drosophila melanog | 0.520 | 0.347 | 0.454 | 1.1e-177 | |
| FB|FBgn0041097 | 1342 | robo3 "robo3" [Drosophila mela | 0.891 | 0.649 | 0.397 | 1.1e-168 | |
| FB|FBgn0005631 | 1429 | robo "roundabout" [Drosophila | 0.494 | 0.337 | 0.397 | 4.6e-128 | |
| UNIPROTKB|F1NTM1 | 1359 | ROBO2 "Uncharacterized protein | 0.493 | 0.354 | 0.370 | 4.4e-110 | |
| RGD|620167 | 1060 | Robo2 "roundabout homolog 2 (D | 0.492 | 0.453 | 0.375 | 4.9e-110 | |
| UNIPROTKB|Q9HCK4 | 1378 | ROBO2 "Roundabout homolog 2" [ | 0.492 | 0.349 | 0.372 | 1.8e-109 | |
| MGI|MGI:1890110 | 1470 | Robo2 "roundabout homolog 2 (D | 0.492 | 0.327 | 0.367 | 9.9e-108 | |
| UNIPROTKB|F1N199 | 1343 | Bt.110263 "Uncharacterized pro | 0.491 | 0.357 | 0.364 | 1e-105 | |
| UNIPROTKB|F1N739 | 1683 | ROBO1 "Uncharacterized protein | 0.489 | 0.284 | 0.350 | 4.6e-104 | |
| ZFIN|ZDB-GENE-001019-1 | 1513 | robo2 "roundabout homolog 2" [ | 0.493 | 0.318 | 0.363 | 6.7e-104 |
| FB|FBgn0002543 lea "leak" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.1e-177, Sum P(4) = 1.1e-177
Identities = 241/530 (45%), Positives = 337/530 (63%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++ LR+EFR++P + RVA G+ AL+ECG PRG PEP + W+KNG ++ +KR+R+VDG
Sbjct: 184 VAFLRDEFRLEPANTRVAQGEVALMECGAPRGSPEPQISWRKNGQTLNLVGNKRIRIVDG 243
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQ++R++DDGRYQCVVKNV GTRES A L+V V+P++IRGP++ T S +VF+
Sbjct: 244 GNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVRPFLIRGPQNQTAVVGSSVVFQ 303
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C +GGD + V W+R S MP R+ VL RSL+L DV LED GEY CEA+NAVG I+
Sbjct: 304 CRIGGDPLPDVLWRRTASGGNMPLRRVHVLEDRSLKLDDVTLEDMGEYTCEADNAVGGIT 363
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
A+ LTV P RP + +E+G + +F C G P P+ +W +EGN SL+ PG R
Sbjct: 364 ATGILTVHAPPKFVIRPKNQLVEIGDEVLFECQANGHPRPTLYWSVEGNSSLLLPGYRDG 423
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
++ +T +G ++L I +R + ++ C +NA GS +R ++V PPP+I
Sbjct: 424 RMEVTLTPEGRSVLSIARFAREDSGKVVTCNALNAVGSVSSRTVVSVDTQFELPPPIIEQ 483
Query: 299 GPANQTLPLRSEARLRCQVRGEG--SVQWWRG--EREVGSGPRVNVTGDGSLVLTDVTK- 353
GP NQTLP++S L C+ G V W+ +V R N++ G+L ++D+ +
Sbjct: 484 GPVNQTLPVKSIVVLPCRTLGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRH 543
Query: 354 EDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG 413
ED G YTCV + +G +SWS LR ++PTNPNI FFRAPE STYPGPP KP +V + N
Sbjct: 544 EDEGLYTCVASNRNGKSSWSGYLRLDTPTNPNIKFFRAPELSTYPGPPGKPQMVEKGENS 603
Query: 414 LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLT 473
+TL+W+R+N++G SSL+GY +EM+ G T WV V T V + T T L
Sbjct: 604 VTLSWTRSNKVGGSSLVGYVIEMF----------GKNETDGWVAVGTRVQNTTFTQTGLL 653
Query: 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT--FSEGI-FSEGGKGIFS 520
G+ Y FL+RA NSHGLS PSP+S+ I + GT F+ G+ SE + S
Sbjct: 654 PGVNYFFLIRAENSHGLSLPSPMSEPITV-GTRYFNSGLDLSEARASLLS 702
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| FB|FBgn0041097 robo3 "robo3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1581 (561.6 bits), Expect = 1.1e-168, Sum P(2) = 1.1e-168
Identities = 369/928 (39%), Positives = 525/928 (56%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR+EFR++P++ R+A GDTALLEC PRG PEPT+ WKK G +D E SKR+R+VDG
Sbjct: 116 VAVLRDEFRLEPQNTRIAQGDTALLECAAPRGIPEPTVTWKKGGQKLDLEGSKRVRIVDG 175
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
NLAIQD+R+TD+G+YQC+ KN G RES+ A L+V VKPYIIRGP D TV + + F
Sbjct: 176 GNLAIQDARQTDEGQYQCIAKNPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFP 235
Query: 121 CSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C VGGD + V W R S MP DR+SVL RSL+L V + D GEY CEA+N VG I+
Sbjct: 236 CRVGGDPMPDVLWLRTASGGNMPLDRVSVLEDRSLRLERVTIADEGEYSCEADNVVGAIT 295
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG-DRV 237
A TLTV P +RP+ +E+G D F C G+P P+ FW ++ N +LI+PG +
Sbjct: 296 AMGTLTVYAPPKFIQRPASKSVELGADTSFECRAIGNPKPTIFWTIKNNSTLIFPGAPPL 355
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
D + T +G ++L + RT L+ILC +N S +R L++ + PPP+I+
Sbjct: 356 DRFHSLNTEEGHSILTLTRFQRTDKDLVILCNAMNEVASITSRVQLSLDSQEDRPPPIII 415
Query: 298 FGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKE- 354
GP NQTLP++S A L+C+ G S + W+R V ++N+T G L+++D+ ++
Sbjct: 416 SGPVNQTLPIKSLATLQCKAIGLPSPTISWYRDGIPVQPSSKLNITTSGDLIISDLDRQQ 475
Query: 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL 414
D G YTCV S G ++WS LR E PTNPNI F+RAPE + P P +P ++N TA+ L
Sbjct: 476 DQGLYTCVASSRAGKSTWSGFLRIELPTNPNIKFYRAPEQTKCPSAPGQPKILNATASAL 535
Query: 415 TLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
T+ W +++ G+SS LGY VEMY + TW+ +A+ + PI TV +LT
Sbjct: 536 TIVWPTSDKAGASSFLGYSVEMYCT----------NQSRTWIPIASRLSEPIFTVESLTQ 585
Query: 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRR 534
G Y F+VRA NS G S PSP+S+ I G G+ +G SE+ G + L
Sbjct: 586 GAAYMFIVRAENSLGFSPPSPISEPITA-GKLV-GV-RDG-----SES---TGTSQLLLS 634
Query: 535 ARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVL 594
+ L + ++EL E ST+ +L+W+I + YIEG Y+Y+R L + +
Sbjct: 635 DVETLLQAN-DVVELLEANASDSTTARLSWDIDSGQYIEGFYLYARELHSSEYKMVTLLN 693
Query: 595 HAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN 654
S V GLA S YEFFLVPF+ S+ GKPSN R +RTLE P P + + N
Sbjct: 694 KGQGLSSCTVPGLAKASTYEFFLVPFYKSIVGKPSNSRRMRTLEDVPEAPPYGMEAIQFN 753
Query: 655 ATSVLLKWKPP-PVGTHNGVIRTYQIIVGG--GNNSALI--NMTVSASTPTLLLTNLSAG 709
TSV LKW PP P T NG++ +Y ++V G +N+ I NMT+ A+TPTLLL NL+ G
Sbjct: 754 RTSVFLKWLPPQPNRTRNGILTSYNVVVKGLDVHNTTRIFKNMTIDAATPTLLLANLTTG 813
Query: 710 IRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGG 769
+ Y +++AA R G GP+S+PA+L + + + L+ ++ SR + LT
Sbjct: 814 VTYYIAVAAATRVGVGPFSKPAVLRIDARTQS-LDTGYTRYPISRD--IADDFLTQTWFI 870
Query: 770 AWLSAPWFIALLTSMVAVMALLFLAMFFVRRR--TLHAKKSSLDHNSAGPGLLATPISLK 827
L + IA++ ++ + L F + +LH + + P L
Sbjct: 871 VLLGS--IIAIIVFLLGALVLFKRYQFIKQTSLGSLHGNHA-IGTVRKFPTLPLNGGGAV 927
Query: 828 AASGLPHPGGGLTTANEGLWIDGKAG-----AGLSHPGG-GLTTANQWMDGGSTRATGWR 881
A G + + GLWID +G AG +PGG G T + + G + +AT +
Sbjct: 928 GAGG-SNSTAAAGQSGHGLWIDPTSGVWRQAAGGGNPGGVGSCTTKEQLPGYA-QATA-Q 984
Query: 882 TGEGQVLLPHAQ-------PDYAEVAAS 902
G+ LLP + PDYAEVA S
Sbjct: 985 QGQQPTLLPDYERLSPLNMPDYAEVACS 1012
|
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| FB|FBgn0005631 robo "roundabout" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 913 (326.5 bits), Expect = 4.6e-128, Sum P(2) = 4.6e-128
Identities = 203/511 (39%), Positives = 290/511 (56%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKR 54
I++LR++FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R
Sbjct: 184 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 243
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAS 114
+R+VDG NL I + D+G Y+C+ +N+ GTRES+ A L V VKPY ++ PKD +
Sbjct: 244 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKPYFMKEPKDQVMLYG 303
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENA 173
F CSVGGD V WK+ +P R +L +SL++S++ D G YVCEA N
Sbjct: 304 QTATFHCSVGGDPPPKVLWKKEEGNIPVSRARILHDEKSLEISNITPTDEGTYVCEAHNN 363
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
VG+ISA A+L V P +RPS+ ++ + C G+PPPS FW EG +L++P
Sbjct: 364 VGQISARASLIVHAPPNFTKRPSNKKVGLNGVVQLPCMASGNPPPSVFWTKEGVSTLMFP 423
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + + +DG L+I +V + + C + S R L VS D PP
Sbjct: 424 NS--SHGRQHVAADGT--LQITDVRQEDEGYYV-CSAFSVVDSSTVRVFLQVSSLDERPP 478
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P+I GPANQTLP S A L C+ G S ++W+ V +G R ++ SL + D+
Sbjct: 479 PIIQIGPANQTLPKGSVATLPCRATGNPSPRIKWFHDGHAVQAGNRYSIIQGSSLRVDDL 538
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
DSG YTC G SW+A+L E P + ++ RA +PSTYP PP P ++N +
Sbjct: 539 QLSDSGTYTCTASGERGETSWAATLTVEKPGSTSL--HRAADPSTYPAPPGTPKVLNVSR 596
Query: 412 NGLTLAWSRNNQI-GS-SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469
++L W+++ + G+ ++GY VE +S P D T W+ A V +T+
Sbjct: 597 TSISLRWAKSQEKPGAVGPIIGYTVEYFS-------P--DLQTG-WIVAAQRVGDTQVTI 646
Query: 470 TNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ LT G +Y FLVRA N+ G+S PS LS+ I
Sbjct: 647 SGLTPGTSYVFLVRAENTQGISVPSGLSNTI 677
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| UNIPROTKB|F1NTM1 ROBO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 4.4e-110, Sum P(2) = 4.4e-110
Identities = 187/505 (37%), Positives = 270/505 (53%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 108 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DREERIS-IRG 165
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F
Sbjct: 166 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVDFR 225
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G Y C AEN VGK+ AS
Sbjct: 226 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYTCIAENRVGKVEAS 285
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD-N 239
ATLTV+ P RP D + GR F C +G+P P+ FW EG+++L++P + N
Sbjct: 286 ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPLQPN 345
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILF 298
+ ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP+IL
Sbjct: 346 SRYSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPPIILQ 402
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKED 355
GP NQTL + A L+C+ G+ + W + G +G PR ++ G+L + + D
Sbjct: 403 GPVNQTLAVDGTALLKCKATGDPLPVISWLKEGFTFLGRDPRTSIQDQGTLQIKTLRLSD 462
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
+G YTCV S G SWSA L + + + + PGPP+KP + + T N +T
Sbjct: 463 TGTYTCVATSSSGETSWSAVLDVTELGGATVS--KNYDINDLPGPPSKPQVTDVTKNSVT 520
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
L+W GS Y +E +S+ + +S W VA +V + + TV L
Sbjct: 521 LSWQPGTP-GSLPASAYIIEAFSQSVSNS----------WQTVANHVKTTLYTVRGLRPN 569
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEI 500
Y F+VRA+NS GLS PSP+SD +
Sbjct: 570 TIYLFMVRAINSQGLSDPSPMSDPV 594
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| RGD|620167 Robo2 "roundabout homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 189/504 (37%), Positives = 266/504 (52%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID E +R+ + G
Sbjct: 131 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-EKEERIS-IRG 188
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V F
Sbjct: 189 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEDEPAEFR 248
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G YVC AEN VGK+ AS
Sbjct: 249 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAISADEGTYVCIAENRVGKVEAS 308
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD-RVDN 239
ATLTV+ P RP D + GR F C +G+P P+ FW EG+++L++P + N
Sbjct: 309 ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPN 368
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILF 298
+ ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP+IL
Sbjct: 369 SRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPPIILQ 425
Query: 299 GPANQTLPLRSEARLRCQVRGEGSVQWW--RGEREVGSGPRVNVTGDGSLVLTDVTKEDS 356
GP NQTL + A L+C+ G V W G +G PR + G+L + ++ D+
Sbjct: 426 GPINQTLAVDGTALLKCKATGPLPVISWLKEGFTFLGRDPRATIQDQGTLQIKNLRISDT 485
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
G YTCV S G SWSA L T + + + PGPP+KP + + T N +TL
Sbjct: 486 GTYTCVATSSSGETSWSAVL---DVTESGATISKNYDTNDLPGPPSKPQVTDVTKNSVTL 542
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
+W G Y +E +S+ + +S W VA +V + + TV L
Sbjct: 543 SWQTGTP-GVLPASAYIIEAFSQSVSNS----------WQTVANHVKTTLYTVRGLRPNT 591
Query: 477 TYTFLVRALNSHGLSAPSPLSDEI 500
Y F+VRA+N GLS PSP+SD +
Sbjct: 592 IYLFMVRAINPQGLSDPSPMSDPV 615
|
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| UNIPROTKB|Q9HCK4 ROBO2 "Roundabout homolog 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 1.8e-109, Sum P(2) = 1.8e-109
Identities = 188/505 (37%), Positives = 270/505 (53%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 128 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-IRG 185
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F
Sbjct: 186 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFR 245
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G Y+C AEN VGK+ AS
Sbjct: 246 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKTMSTDEGTYMCIAENRVGKMEAS 305
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD-RVDN 239
ATLTV+ P RP D + GR F C +G+P P+ FW EG+++L++P + N
Sbjct: 306 ATLTVRAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPN 365
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILF 298
+ ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP+IL
Sbjct: 366 SRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPPIILQ 422
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKED 355
GPANQTL + A L+C+ G+ + W + G G PR + G+L + ++ D
Sbjct: 423 GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISD 482
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLT 415
+G YTCV S G SWSA L T + + S PGPP+KP + + T N +T
Sbjct: 483 TGTYTCVATSSSGETSWSAVL---DVTESGATISKNYDLSDLPGPPSKPQVTDVTKNSVT 539
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
L+W G+ Y +E +S+ + +S W VA +V + + TV L
Sbjct: 540 LSWQPGTP-GTLPASAYIIEAFSQSVSNS----------WQTVANHVKTTLYTVRGLRPN 588
Query: 476 LTYTFLVRALNSHGLSAPSPLSDEI 500
Y F+VRA+N GLS PSP+SD +
Sbjct: 589 TIYLFMVRAINPQGLSDPSPMSDPV 613
|
|
| MGI|MGI:1890110 Robo2 "roundabout homolog 2 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 9.9e-108, Sum P(2) = 9.9e-108
Identities = 187/509 (36%), Positives = 271/509 (53%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 128 VALLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKVRID-DKEERIS-IRG 185
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F
Sbjct: 186 GKLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFR 245
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V GD TV WK+ + +P R + +L++ D G YVC AEN VGK+ AS
Sbjct: 246 CQVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYVCIAENRVGKVEAS 305
Query: 181 ATLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD- 235
ATLTV++ P+ RP D + GR F C +G+P P+ FW EG+++L++P
Sbjct: 306 ATLTVRVRPVAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQP 365
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPP 294
+ N + ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP
Sbjct: 366 QQPNSRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPP 422
Query: 295 VILFGPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGDGSLVLTDV 351
+IL GP NQTL + A L+C+ GE + W + G +G PR + G+L + ++
Sbjct: 423 IILQGPINQTLAVDGTALLKCKATGEPLPVISWLKEGFTFLGRDPRATIQDQGTLQIKNL 482
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
D+G YTCV S G SWSA L T + + + PGPP+KP + + +
Sbjct: 483 RISDTGTYTCVATSSSGETSWSAVL---DVTESGATISKNYDMNDLPGPPSKPQVTDVSK 539
Query: 412 NGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTN 471
N +TL+W G Y +E +S+ + +S W VA +V + + TV
Sbjct: 540 NSVTLSWQPGTP-GVLPASAYIIEAFSQSVSNS----------WQTVANHVKTTLYTVRG 588
Query: 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
L Y F+VRA+N GLS PSP+SD +
Sbjct: 589 LRPNTIYLFMVRAINPQGLSDPSPMSDPV 617
|
|
| UNIPROTKB|F1N199 Bt.110263 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.0e-105, Sum P(2) = 1.0e-105
Identities = 185/508 (36%), Positives = 270/508 (53%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
S+LR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID + +R+ + G
Sbjct: 1 SVLRDDFRQNPTDVVVAAGEPAILECQPPRGHPEPTIYWKKDKIRID-DKEERIS-IRGG 58
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
L I ++RK+D G Y CV N+ G R+S A L V +P +R P + V + F C
Sbjct: 59 KLMISNTRKSDAGMYTCVGTNMVGERDSDPAELTVFERPTFLRRPINQVVLEEEAVEFRC 118
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181
V GD TV WK+ + +P R + +L++ D G Y+C AEN VGK+ ASA
Sbjct: 119 QVQGDPQPTVRWKKDDADLPRGRYDIKDDYTLRIKKAMSTDEGTYMCIAENRVGKVEASA 178
Query: 182 TLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD-R 236
TLTV+ P+ RP D + GR F C +G+P P+ FW EG+++L++P +
Sbjct: 179 TLTVRARPVAPPQFVVRPRDQIVAQGRTVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQ 238
Query: 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPV 295
N + ++ G L I N+ R+ A I C + AGS LA+A L V+ PPP+
Sbjct: 239 QPNSRCSVSPTGD--LTITNIQRSDAGYYI-CQALTVAGSILAKAQLEVTDVLTDRPPPI 295
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGDGSLVLTDVT 352
IL GPANQTL + A L+C+ G+ + W + G +G PR + G+L + ++
Sbjct: 296 ILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFLGRDPRATIQEQGTLQIKNLR 355
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
D+G YTCV S G SWSA L T ++ + + PGPP+KP + + T N
Sbjct: 356 ISDTGTYTCVATSSSGETSWSAVL---DVTESGATISKSYDLNDLPGPPSKPQVTDVTKN 412
Query: 413 GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
+TL+W G Y +E +S+ + +S W VA ++ + + TV L
Sbjct: 413 SVTLSWQPGTP-GILPASAYIIEAFSQSVSNS----------WQTVANHIKTTLYTVRGL 461
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSDEI 500
Y F+VRA+N GLS PS +SD +
Sbjct: 462 RPNTIYLFMVRAINPQGLSDPSAMSDPV 489
|
|
| UNIPROTKB|F1N739 ROBO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 4.6e-104, Sum P(3) = 4.6e-104
Identities = 179/510 (35%), Positives = 262/510 (51%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G
Sbjct: 198 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERIT-IRG 255
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I +RK+D G+Y CV N+ G RES A L VL +P ++ P + V+ F+
Sbjct: 256 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFK 315
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C GD V TV W++ +P+ R + +L++ V D G Y C AEN VGK AS
Sbjct: 316 CEARGDPVPTVRWRKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEAS 375
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY---PGDRV 237
ATLTVQ P +P D + +GR F C G+P P+ FW EG+++L++ P
Sbjct: 376 ATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSS 435
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN-PPPVI 296
T D L I NV R+ I C +N AGS + +A L V+ + PPPVI
Sbjct: 436 SRFSVSQTGD----LTITNVQRSDVGYYI-CQTLNVAGSIITKAYLEVTDVIADRPPPVI 490
Query: 297 LFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGS-GPRVNVTGDGSLVLTDVTK 353
GP NQT+ + L C G ++ W + V + R+ G L +
Sbjct: 491 RQGPVNQTVAVDGTLVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLETGVLQIRYAKL 550
Query: 354 EDSGEYTCVVKSPHGSASWSASLR---FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
D+G YTC+ +P G A+WSA + F P P R +P+ P P+KP + + +
Sbjct: 551 GDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP----RPTDPNLIPSAPSKPEVTDVS 606
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470
N +TL+W N G++ Y +E +S SG ++W VA NV + +
Sbjct: 607 RNTVTLSWQPNLNSGATPT-SYIIEAFSHA------SG----SSWQTVAENVKTETFAIK 655
Query: 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
L Y FLVRA N++G+S PS +SD +
Sbjct: 656 GLKPNAIYLFLVRAANAYGISDPSQISDPV 685
|
|
| ZFIN|ZDB-GENE-001019-1 robo2 "roundabout homolog 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 6.7e-104, Sum P(3) = 6.7e-104
Identities = 186/512 (36%), Positives = 275/512 (53%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
++LLR++FR P VAAG+ A+LEC PPRGHPEPT+ WKK+ ID E R++ + G
Sbjct: 127 VALLRDDFRQNPTDVVVAAGEPAILECVPPRGHPEPTIYWKKDKVRID-EKDDRIK-IRG 184
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I ++RK+D G Y CV N+ G R+S A + V +P +R P + V + F
Sbjct: 185 GKLMISNTRKSDAGMYICVGTNMVGERDSETAQVTVFERPTFLRRPTNQVVLEEEAVEFR 244
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVGKI 177
C V GD ++ WK+ +P R + + +L++ D G + C AEN VGK+
Sbjct: 245 CQVQGDPQPSIRWKKDDVEIPRGRYDMKFDKDDFTLRIKKATASDEGTFTCVAENRVGKM 304
Query: 178 SASATLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
ASATLTV+ P+ RP D + GR A F C +G+P P+ FW EG+++L++P
Sbjct: 305 EASATLTVRARPVAAPQFVIRPRDQIVAQGRTASFPCETKGNPQPAVFWQKEGSQNLLFP 364
Query: 234 GD-RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPN 291
+ N + ++ G L I V R A I C + AGS LA+A L V+
Sbjct: 365 NQPQQPNSRFSVSPSGD--LTITAVQRADAGYYI-CQALTVAGSILAKAQLEVTDVLTDR 421
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR-GEREVGSGPRVNVTGDGSLVL 348
PPP+I GPANQTL + S A LRC GE ++ W + G +G PR+++ GSL +
Sbjct: 422 PPPIIRQGPANQTLGVDSVALLRCHASGEPVPTISWLKDGVSLLGKDPRMSLQDLGSLQI 481
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
+ DSG YTCV S G SWSA L + + + + + + PGPP+KP + +
Sbjct: 482 KGLRLSDSGIYTCVAASSSGETSWSAFLEVKEAGS--LVVVKDRDENELPGPPSKPQVTD 539
Query: 409 QTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468
T N ++L+W G+S++ Y +E +S+ + +S W VA +V + T
Sbjct: 540 VTKNSVSLSWQPGLP-GASAISTYVIEAFSQSVSNS----------WQTVADHVKTTQYT 588
Query: 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ L Y F+VRA+N GLS PSP+S+ +
Sbjct: 589 IKGLRPNTIYLFMVRAVNVQGLSDPSPMSEPV 620
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 977 | |||
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 8e-33 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 2e-22 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-17 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 2e-15 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 6e-14 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 6e-14 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 2e-13 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 3e-12 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 6e-12 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 6e-12 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 7e-12 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 8e-11 | |
| cd04967 | 91 | cd04967, Ig1_Contactin, First Ig domain of contact | 8e-11 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-10 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-10 | |
| cd04968 | 88 | cd04968, Ig3_Contactin_like, Third Ig domain of co | 2e-10 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 3e-10 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 3e-10 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 3e-10 | |
| cd05848 | 94 | cd05848, Ig1_Contactin-5, First Ig domain of conta | 6e-10 | |
| cd05876 | 71 | cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik | 6e-10 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 1e-09 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 1e-09 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 3e-09 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 4e-09 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 6e-09 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 8e-09 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-08 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-08 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 1e-08 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 1e-08 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 2e-08 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 2e-08 | |
| cd05745 | 74 | cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig | 6e-08 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 8e-08 | |
| cd05726 | 90 | cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like | 3e-07 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 4e-07 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 5e-07 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 6e-07 | |
| cd05849 | 93 | cd05849, Ig1_Contactin-1, First Ig domain of conta | 6e-07 | |
| cd05732 | 96 | cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig | 6e-07 | |
| cd05851 | 88 | cd05851, Ig3_Contactin-1, Third Ig domain of conta | 6e-07 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 7e-07 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 8e-07 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 9e-07 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 1e-06 | |
| cd05850 | 94 | cd05850, Ig1_Contactin-2, First Ig domain of conta | 1e-06 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 2e-06 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 3e-06 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 3e-06 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 4e-06 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 4e-06 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 5e-06 | |
| cd05726 | 90 | cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like | 6e-06 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 7e-06 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 7e-06 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 1e-05 | |
| cd05757 | 92 | cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig) | 1e-05 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 1e-05 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 2e-05 | |
| cd04968 | 88 | cd04968, Ig3_Contactin_like, Third Ig domain of co | 2e-05 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 3e-05 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 3e-05 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 3e-05 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 5e-05 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 5e-05 | |
| cd05760 | 77 | cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like | 5e-05 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 6e-05 | |
| cd05870 | 98 | cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik | 6e-05 | |
| cd05754 | 85 | cd05754, Ig3_Perlecan_like, Third immunoglobulin ( | 8e-05 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-04 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-04 | |
| cd04976 | 71 | cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik | 1e-04 | |
| cd05722 | 95 | cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l | 1e-04 | |
| cd05857 | 85 | cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like | 1e-04 | |
| cd05857 | 85 | cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like | 1e-04 | |
| PHA02785 | 326 | PHA02785, PHA02785, IL-beta-binding protein; Provi | 1e-04 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 2e-04 | |
| cd05873 | 87 | cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like | 2e-04 | |
| cd05869 | 97 | cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik | 2e-04 | |
| cd05733 | 77 | cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig | 2e-04 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 2e-04 | |
| cd04970 | 85 | cd04970, Ig6_Contactin_like, Sixth Ig domain of co | 2e-04 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 2e-04 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 3e-04 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 3e-04 | |
| cd05734 | 79 | cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li | 3e-04 | |
| cd05894 | 86 | cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma | 4e-04 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 5e-04 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 5e-04 | |
| cd05741 | 92 | cd05741, Ig_CEACAM_D1_like, First immunoglobulin ( | 5e-04 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 6e-04 | |
| cd05867 | 76 | cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I | 8e-04 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 0.001 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 0.001 | |
| cd05892 | 75 | cd05892, Ig_Myotilin_C, C-terminal immunoglobulin | 0.001 | |
| cd04972 | 90 | cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul | 0.001 | |
| cd04973 | 79 | cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like | 0.001 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 0.002 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 0.002 | |
| cd05754 | 85 | cd05754, Ig3_Perlecan_like, Third immunoglobulin ( | 0.002 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 0.002 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 0.002 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 0.003 | |
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 0.003 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 0.004 | |
| cd04970 | 85 | cd04970, Ig6_Contactin_like, Sixth Ig domain of co | 0.004 | |
| cd04974 | 90 | cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like | 0.004 | |
| cd05858 | 90 | cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik | 0.004 | |
| cd05874 | 77 | cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like | 0.004 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 8e-33
Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
V+P +VA G+ A+LEC PPRGHPEPT+ W+K+G P++ +N +R+R+VD NL I ++R
Sbjct: 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN-ERVRIVDDGNLLIAEAR 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
K+D+G Y+CV N+ G RES A L V
Sbjct: 60 KSDEGTYKCVATNMVGERESAAARLSV 86
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-22
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
+ F+C VGGD V TV W++ +P+ R +L +SL++ +V D G Y CEAEN VGK
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK 60
Query: 177 ISASATLTV 185
I ASA+LTV
Sbjct: 61 IEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-17
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQL 155
P + PKD V F C+V GD TV W + G + R V +L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+V+ +D G+Y C A N+ G+ ASA LTV
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+F +PK V G++A C G P+PT+ W K+G P+ +S R ++ L
Sbjct: 2 KFTQKPKDVEVQEGESARFTC-TVTGDPDPTVSWFKDGQPL--RSSDRFKVTYEGGTYTL 58
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + + D+G+Y CV N AG E++ A L V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGEAEAS-AELTV 90
|
Length = 90 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-14
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM--PEDRMSVLPSR---SLQLSDVRL 160
P TV + C G V W + G + R SV S +L +S+V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 161 EDAGEYVCEAENAVGKISASATLTV 185
ED+G Y C A N+ G S+ TLTV
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 6e-14
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM--PEDRMSVLPSR---SLQLSDVRL 160
P TV + C G V W + G + R SV S +L +S+V
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 161 EDAGEYVCEAENAVGKISASATLTV 185
ED+G Y C A N+ G S+ TLTV
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-13
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVT---GDGSLVL 348
P P + + AR C V G+ +V W++ + + S R VT G +L +
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASL 376
++V +D G+YTCV + G A SA L
Sbjct: 61 SNVQPDDEGKYTCVATNSAGEAEASAEL 88
|
Length = 90 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-12
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
+ C G+ V + W + G +PE V +L + V LED+G Y C AEN+ G
Sbjct: 5 VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-12
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQ-WWR--GEREVGSGPRVNVTGDG---SLVLTDVTK 353
P + T+ L C+ G + W G + + R +V+ G +L +++VT
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 354 EDSGEYTCVVKSPHGSASWSASLR 377
EDSG YTC + GSAS +L
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 6e-12
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQ-WWR--GEREVGSGPRVNVTGDG---SLVLTDVTK 353
P + T+ L C+ G + W G + + R +V+ G +L +++VT
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 354 EDSGEYTCVVKSPHGSASWSASLR 377
EDSG YTC + GSAS +L
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 7e-12
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 10 VQPKSQRVAA----GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
++ + V A G + L C G PEPT+ W K+G PI+ K DG+ + I
Sbjct: 4 IRARQSEVNATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTI 62
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D K D+ Y C+ +N AG +E+ L+V K
Sbjct: 63 LDVDKLDEAEYTCIAENKAGEQEAE-IHLKVFAK 95
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 8e-11
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91
G+P+P + W K+ P+D ++ R++ + L I++S ++D G+Y+CV N AGTR S
Sbjct: 9 GNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAP 68
Query: 92 AVLRV 96
A L V
Sbjct: 69 ANLYV 73
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-11
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD-GRYQCVVKNVAGTRES 89
RG P PT W NG ID E R LV G NL I + K D GRYQC+ N+ GT S
Sbjct: 29 RGSPPPTYRWLMNGTEIDDEPDSRYSLVGG-NLVISNPSKAKDAGRYQCLASNIVGTVLS 87
Query: 90 TDAV 93
+A
Sbjct: 88 REAT 91
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-10
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
G + L C P G+P P + W K+G P+ N + G+ L I+ D G Y CV
Sbjct: 2 GQSVTLTC-PAEGNPVPNITWLKDGKPLPESNR---FVASGSTLTIKSVSLEDSGLYTCV 57
Query: 80 VKNVAG 85
+N AG
Sbjct: 58 AENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 57.1 bits (137), Expect = 2e-10
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR--------SLQLSDVRLEDAGEYVC 168
+ C G T+ W + G +P ++ + S +L +S+V LED+G Y C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 169 EAENAVGKISASAT 182
A N+ G +SAS T
Sbjct: 61 VASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-10
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
I+ PKDT + EC G+ V + W+++ +MP + L++ +++
Sbjct: 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQ 61
Query: 160 LEDAGEYVCEAENAVGKISASATLTVQ 186
ED G Y CEAEN GK + + VQ
Sbjct: 62 FEDEGTYECEAENIKGKDTHQGRIYVQ 88
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 3e-10
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 311 ARLRCQVRGEG--SVQWWRGEREVGSGPRVNV-------TGDGSLVLTDVTKEDSGEYTC 361
L C G ++ W + + + S V +G +L +++VT EDSG YTC
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 362 VVKSPHGSASWSAS 375
V + G+ S S +
Sbjct: 61 VASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIV-GGGNNSALINMTVSASTPTLLLTNLSAGIR 711
+ +TS+ L W PPP NG I Y++ +TV +T + LT L G
Sbjct: 11 VTSTSLTLSWSPPP---GNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTE 67
Query: 712 YSVSLAATNRAGTGPYS 728
Y V + A N AG GP S
Sbjct: 68 YEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-10
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PPT + + T+ +TL+W+ G + GY VE + + W
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGP-ITGYVVEYR-----------EKGSGDWKE 48
Query: 458 VATNVPS-PILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V S T+T L G Y F VRA+N G S PS
Sbjct: 49 VEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE 87
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 6e-10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
RG+P PT W +NG ID E+ R L+DG + S D GRYQC+ N G+ S
Sbjct: 29 RGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR 88
Query: 91 DAVLR 95
+A+L+
Sbjct: 89 EALLQ 93
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94 |
| >gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 6e-10
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEYVCEAENAVG 175
+V EC G VHW R+ + +R L +++LQL +V D GEYVC AEN+ G
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60
Query: 176 KISASATLTVQ 186
T+TV+
Sbjct: 61 SARHHYTVTVE 71
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 55.2 bits (132), Expect = 1e-09
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-----LAIQDSRKTDDGRYQ 77
L C G P PT+ W KNG P+ R+R GT+ L I + D G Y
Sbjct: 1 VTLTC-LASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59
Query: 78 CVVKNVAGTREST 90
CV N AGT ++
Sbjct: 60 CVASNSAGTVSAS 72
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-09
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSR-NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P PP+ + + T+ +TL+W + + ++GY+VE + W
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVE------------YREEGSEWK 48
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLS 491
V S T+T L G Y F VRA+N G
Sbjct: 49 EVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 3e-09
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
PS L + +TSV L W+PPP G I Y + S + V+ S+ +
Sbjct: 1 PSPPSNLR-VTDVTSTSVTLSWEPPPDDGITGYIVGY-RVEYREEGSEWKEVNVTPSSTS 58
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTG 725
LT L G Y + A N AG G
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-09
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 311 ARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
L C G ++ W + + + R +G +L + V+ EDSG YTCV ++ G
Sbjct: 5 VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG-STLTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 24 LLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83
++EC P+ P+PT+ W K + NS R+ + +L I + K+D+G+Y C +N
Sbjct: 5 IIEC-KPKAAPKPTISWSKGTELL--TNSSRICIWPDGSLEILNVTKSDEGKYTCFAENF 61
Query: 84 AGTRESTDAVLRV 96
G ST L V
Sbjct: 62 FGKANST-GSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-09
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEYVCEAENAVG 175
++ EC G + W ++G +P DR +++L++ +V ED GEY C A N++G
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 176 KISASATLTVQ 186
+ ++TV+
Sbjct: 61 SARHTISVTVE 71
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 69
P S V G++ L C G P P + W K G + E+ + G+ L I +
Sbjct: 1 PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D G Y C N +G+ S L V
Sbjct: 60 PEDSGTYTCAATNSSGSASSG-TTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 69
P S V G++ L C G P P + W K G + E+ + G+ L I +
Sbjct: 1 PPSVTVKEGESVTLSC-EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVT 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D G Y C N +G+ S L V
Sbjct: 60 PEDSGTYTCAATNSSGSASSG-TTLTV 85
|
Length = 85 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-08
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT-LLLTNLSAGIR 711
+ +TSV L W PP G I Y + + + V+ + T LT L G
Sbjct: 12 VTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTE 69
Query: 712 YSVSLAATNRAGTGPYSRP 730
Y + A N G P S
Sbjct: 70 YEFRVRAVNGGGESPPSES 88
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-08
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
IVFEC V G TV W + G +P D ++ +LQ+ + D G Y C AEN VG
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61
Query: 176 KISASATLTV 185
+ A A L +
Sbjct: 62 NVQAGAQLII 71
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----SKRLRLVDGT--NLA 64
P V+ GD A L C G P PT+ W KNG P++ + S R+ L G+ L
Sbjct: 7 HPSDLIVSKGDPATLNC-KAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLR 65
Query: 65 IQDSRK--TDDGRYQCVVKNVAGTRESTDAVLRV 96
+ RK +D+G Y CV N G S +A L V
Sbjct: 66 VVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-08
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 120 ECSVGGDAVLTVHWKRLGS----AMPEDRMSVLPSRS-LQLSDVRLEDAGEYVCEAENAV 174
EC+ G + W++ G A E RM V+P + DV++ED G Y C A+N
Sbjct: 4 ECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTA 63
Query: 175 GKISASATLTV 185
G ISA+ATLTV
Sbjct: 64 GSISANATLTV 74
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 6e-08
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 119 FECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
F C G + W + GS + DR VL S +L++S V L D G+Y C+A N VG
Sbjct: 7 FLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ 66
Query: 178 SASATLTV 185
A LTV
Sbjct: 67 RTVAQLTV 74
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 8e-08
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAG 164
DT S + +EC G+ W + G + E+R+ V + L+++ + L D+G
Sbjct: 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE-AGDLRITKLSLSDSG 64
Query: 165 EYVCEAENAVGKISASATLTV 185
Y C AEN G I ASA L V
Sbjct: 65 MYQCVAENKHGTIYASAELAV 85
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-07
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
GR F C G+P P+ FW EG+++L++ + S + L I NV R+
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGD-LTITNVQRSDV 59
Query: 263 PLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
I C +N AGS L +A L V+ + PP
Sbjct: 60 GYYI-CQTLNVAGSILTKAYLEVTDVIADRPP 90
|
Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDG 74
V AG T L+C P G+P PT+ W K+G P E+ V L ++ +D G
Sbjct: 6 VPAGSTVRLKC-PASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64
Query: 75 RYQCVVKNVAGTREST 90
+Y C+V+N G+ T
Sbjct: 65 KYTCIVENKYGSINHT 80
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-07
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 311 ARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
+C+V G+ +V W + + E+ G R + D SL + +VT D G YTC ++ G
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDKSLKIRNVTAGDEGSYTCEAENMVG 59
Query: 369 SASWSASLR 377
SASL
Sbjct: 60 KIEASASLT 68
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-07
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 315 CQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
C+ + + ++ W +G + + R+ + DGSL + +VTK D G+YTC ++ G A+
Sbjct: 8 CKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS 67
Query: 373 SASL 376
+ SL
Sbjct: 68 TGSL 71
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 6e-07
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD-GRYQCVVKNVAGTRES 89
R +P P W+KN ID N R +V G NL I + K D GRY C+V N+ G S
Sbjct: 29 RANPFPIYKWRKNNLDIDLTN-DRYSMVGG-NLVINNPDKYKDAGRYVCIVSNIYGKVRS 86
Query: 90 TDAVL 94
+A L
Sbjct: 87 REATL 91
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93 |
| >gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-07
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL------GSAMPEDRMSV---L 148
V+P I T V I + C GD + + W+R G + R+ V
Sbjct: 1 VQPKITYLENQTAVELEQITL-TCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA 59
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
SL L DV+L DAG Y CEA N +G S L V
Sbjct: 60 RVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96 |
| >gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 6e-07
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
KDT + EC G+ V + W+++ MP + L++ +++ ED G Y
Sbjct: 9 KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTY 68
Query: 167 VCEAENAVGKISASATLTVQ 186
CEAEN GK A + VQ
Sbjct: 69 ECEAENIKGKDKHQARVYVQ 88
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
PT T+ + T+ LTL+WS G+ + GY+VE P + V
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPPP--GNGPITGYEVE--------YRPVNGGEEWKEITV 50
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
S T+T L G Y V+A+N G PS
Sbjct: 51 PGTTTS--YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
G+T L+C G P+PT+ W+ NG PI+ R VDG L + + + D YQC
Sbjct: 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCN 59
Query: 80 VKNVAGT 86
NV G
Sbjct: 60 ASNVHGY 66
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-07
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88
G P P L W KNG I + SK+L L+ +G+ L I + R D G Y C+ KN AG E
Sbjct: 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE 66
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-06
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
KP I +V++ + CS GG T+ W R GS +L LS
Sbjct: 1 KPVITV-SPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSS 59
Query: 158 VRLEDAGEYVCEAEN 172
V ED+G Y C A N
Sbjct: 60 VTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 8 FRVQPKSQRVAAGDT---ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F QP S G L C R P T WK NG I F R LV G NL
Sbjct: 4 FEEQPSSLLFPEGSPEEKVTLGC-RARASPPATYRWKMNGTEIKFAPESRYTLVAG-NLV 61
Query: 65 IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLR 95
I + +K D G YQC+ N GT S +A LR
Sbjct: 62 INNPQKARDAGSYQCLAINRCGTVVSREANLR 93
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVLT 349
PVI + ++ L C G ++ W+R G G + +L L+
Sbjct: 1 KPVI-TVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISG-GSGGLGSSGSTLTLS 58
Query: 350 DVTKEDSGEYTCVVKS 365
VT EDSG YTCV +
Sbjct: 59 SVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-06
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
++ EC T+ W + + R+ + P SL++ +V D G+Y C AEN G
Sbjct: 4 VIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFG 63
Query: 176 KISASATLTV 185
K +++ +L+V
Sbjct: 64 KANSTGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
+G PEPT+ W K+G + S + + LAI+D D GRY+CV +N G S
Sbjct: 8 QGDPEPTITWNKDG--VQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASV 64
Query: 91 DAVL 94
VL
Sbjct: 65 SMVL 68
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-06
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCV 79
A LEC GHP P + W+K+G DF ++ R+ + I D + D G Y C
Sbjct: 1 ARLECAA-TGHPTPQIAWQKDGG-TDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCT 58
Query: 80 VKNVAGTRESTDAVLRVL 97
+N AG+ S +A L VL
Sbjct: 59 AQNTAGSI-SANATLTVL 75
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 309 SEARLRCQVRGE--GSVQWWRGEREVGSGPRV----NVTGDGSLVLTDVTKEDSGEYTCV 362
S L C V G V W++ + + V N +L +++VT EDSG YTCV
Sbjct: 2 SSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61
Query: 363 V 363
V
Sbjct: 62 V 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + P V G+ L C G+P P W K+G P+ N
Sbjct: 1 KPVLTPSPTVVFEGEDVTLTC-SAPGNPPPNYTWYKDGVPLS----------SSQNGFFT 49
Query: 67 DS-RKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ D G Y CV N G + S L V
Sbjct: 50 PNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-06
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVLPSRSLQLSDVRLEDAGEYV 167
+ F+C G+ + W++ GS R SV + L +++V+ D G Y+
Sbjct: 4 VTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYI 63
Query: 168 CEAENAVGKISASATLTVQMAPIVR 192
C+ N G I A L V R
Sbjct: 64 CQTLNVAGSILTKAYLEVTDVIADR 88
|
Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-06
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS------VLPSRSL 153
P I+ P D VS C G T+ W + G + D+ VLPS SL
Sbjct: 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL 61
Query: 154 QLSDV-----RLEDAGEYVCEAENAVGK-ISASATLTV 185
V D G YVC A N++G+ +S +A+L V
Sbjct: 62 FFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-06
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATL 183
LQ++ +L D+GEY C EN +G + +A +
Sbjct: 45 LQINKAKLADSGEYTCVVENILGNDTVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE 165
P T V + CS G+ W + G + + +V ED+G
Sbjct: 6 PSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPNVSAEDSGT 59
Query: 166 YVCEAEN-AVGKISASATLTV 185
Y C A N GK S TLTV
Sbjct: 60 YTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 303 QTLPLRSEARLRC-------QVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKED 355
Q L ++ C VQW++ + ++ G R L++ +VT+ED
Sbjct: 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYK-DCKLLEGDRKRFVKGSKLLIQNVTEED 63
Query: 356 SGEYTCVVKSPH 367
+G YTC + H
Sbjct: 64 AGNYTCKLTFTH 75
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 29 PPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCVVKNVAG 85
P G P PT+ W K+G + S R+++ T+L I+++ ++D G+Y +KN AG
Sbjct: 7 PISGRPTPTVTWSKDG--KPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG 64
Query: 86 TRESTDAVLRVLV 98
+ +T + V V
Sbjct: 65 EKSAT---INVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253
+P D+ ++ G A F C + G P P+ W +G + DR + E G L
Sbjct: 6 KPKDVEVQEGESARFTCTVTGDPDPTVSWFKDG--QPLRSSDRF-KVTYE---GGTYTLT 59
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
I NV C+ N+AG A A LTV
Sbjct: 60 ISNVQPDDEG-KYTCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDS 68
V PK G LEC G+P P + W+K +G S + G L I +
Sbjct: 6 VFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMP----SSAEISMSGAVLKIPNI 60
Query: 69 RKTDDGRYQCVVKNVAG 85
+ D+G Y+C +N+ G
Sbjct: 61 QFEDEGTYECEAENIKG 77
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 106 PKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLED 162
P DT V+ + V ECS G TV W++ G + D R+ ++ +L +++ R D
Sbjct: 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSD 62
Query: 163 AGEYVCEAENAVG-KISASATLTV 185
G Y C A N VG + SA+A L+V
Sbjct: 63 EGTYKCVATNMVGERESAAARLSV 86
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 32 GHPEPTLVWKKNGH---PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88
G P PT+ W KNG P D+ ++V NL + K+D+G YQC+ +N G +
Sbjct: 10 GKPTPTVKWVKNGDMVIPSDY-----FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQ 64
Query: 89 ST 90
+
Sbjct: 65 AG 66
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQLSD 157
I+ P+ TVS F C V G+ TV W R G + + + S + ++S
Sbjct: 6 ILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISK 65
Query: 158 VRLEDAGEYVCEAENAVGKISASATLT 184
V++ D G Y EN+ GK A TLT
Sbjct: 66 VQMSDEGNYTVVVENSEGKQEAQFTLT 92
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDAGE 165
V A S + +C G+ T+ W + G E R+ R +L L V D+G+
Sbjct: 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65
Query: 166 YVCEAENAVGKISASATLTV 185
Y C EN G I+ + + V
Sbjct: 66 YTCIVENKYGSINHTYKVDV 85
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 305 LPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVT----GDGSLVLTDVTKEDSGE 358
+P S RL+C G ++ W + + R+ +L+L V DSG+
Sbjct: 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGK 65
Query: 359 YTCVVKSPHGS 369
YTC+V++ +GS
Sbjct: 66 YTCIVENKYGS 76
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-05
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENA 173
+ C + G T W R G+ + + + + S R+L L +D+G Y C A NA
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 174 VGKISASATLTVQMA 188
G + +S T+ +
Sbjct: 61 FGSVCSSQNFTLSII 75
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-05
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
G + EC G+P P W KNG P+ EN R+ + G L I +
Sbjct: 6 ISDTEADIGSSLRWEC-KASGNPRPAYRWLKNGQPLASEN--RIEVEAGD-LRITKLSLS 61
Query: 72 DDGRYQCVVKNVAGT 86
D G YQCV +N GT
Sbjct: 62 DSGMYQCVAENKHGT 76
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV-- 147
V+P+II+ +TTV + + C G+ + + WKR G P+ R+ V
Sbjct: 1 VQPHIIQLKNETTVENGAATLS-CKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG 59
Query: 148 -LPSRSLQLSDVRLEDAGEYVCEAENAVG 175
SL + DV+L D+G Y CEA + +G
Sbjct: 60 QHGESSLHIKDVKLSDSGRYDCEAASRIG 88
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98 |
| >gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 106 PKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
P+ V + + F C + T+ W R+G +P M + L + +V+L DAG
Sbjct: 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDF--NGILTIRNVQLSDAG 65
Query: 165 EYVCEAENAVGKISASATL 183
YVC N + A+ATL
Sbjct: 66 TYVCTGSNMLDTDEATATL 84
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LK 253
P + ++ G C GSPPP W +G + L G ++ G L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR------FSVSRSGSTSTLT 54
Query: 254 IQNVSR--TAAPLIILCLGVNAAGSDLARASLTV 285
I NV+ + C N++GS + +LTV
Sbjct: 55 ISNVTPEDSG---TYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LK 253
P + ++ G C GSPPP W +G + L G ++ G L
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR------FSVSRSGSTSTLT 54
Query: 254 IQNVSR--TAAPLIILCLGVNAAGSDLARASLTV 285
I NV+ + C N++GS + +LTV
Sbjct: 55 ISNVTPEDSG---TYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82
+ +P P + W KNG I + K G +L I+D + D G Y V+ N
Sbjct: 8 KAYPPPEIQWYKNGKLI---SEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTN 56
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71 |
| >gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSD 157
+ + P D +V CS G+ + WK+ G + +R LP+ SL ++
Sbjct: 1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITS 60
Query: 158 VR-----LEDAGEYVCEAEN-AVGKI-SASATLTV 185
V D G Y C A+N ++G I S +A LTV
Sbjct: 61 VVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95 |
| >gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVDGTNLAIQDSRKTDD 73
V A +T C P G+P PT+ W KNG E+ ++R + L ++ +D
Sbjct: 6 VPAANTVKFRC-PAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWS-LIMESVVPSDK 63
Query: 74 GRYQCVVKNVAGTREST 90
G Y CVV+N G+ T
Sbjct: 64 GNYTCVVENEYGSINHT 80
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85 |
| >gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDAGE 165
V A++ + F C G+ T+ W + G E R+ R SL + V D G
Sbjct: 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 65
Query: 166 YVCEAENAVGKISASATLTV 185
Y C EN G I+ + L V
Sbjct: 66 YTCVVENEYGSINHTYHLDV 85
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85 |
| >gnl|CDD|165149 PHA02785, PHA02785, IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 38/213 (17%)
Query: 38 LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN------------VAG 85
++W+K G +N + + + +G+N+ I + ++D G Y C+ KN +
Sbjct: 63 ILWEKRGA----DNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVS 118
Query: 86 TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS-VGGDAVLTVHWKRLGSAMPEDR 144
ES + ++ P I+ + +I F S V D + + H +RL + R
Sbjct: 119 VSESN---IDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGH-RRLRN----KR 170
Query: 145 MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRER--PSDLRL-- 200
+ + + DVR DAG Y C + G + + T V++ VR+R P ++L
Sbjct: 171 LKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLE--VRDRIIPPTMQLPE 228
Query: 201 ----EVGRDAVFLCGIEGSPPPS---TFWMLEG 226
+G + C + PP + FW+ G
Sbjct: 229 GVVTSIGSNLTIACRVSLRPPTTDADVFWISNG 261
|
Length = 326 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 2e-04
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 300 PANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSG 357
++ + S R C+ G + +W + + + S R+ V G L +T ++ DSG
Sbjct: 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA-GDLRITKLSLSDSG 64
Query: 358 EYTCVVKSPHGSASWSASLR 377
Y CV ++ HG+ SA L
Sbjct: 65 MYQCVAENKHGTIYASAELA 84
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P+ + G+ A L+C P +VWK +G + E++K L DG L I ++ +
Sbjct: 3 PRQRTFKLGNNAELKCSPKSNLAR--VVWKFDGKVLTPESAKYLLYRDG--LLIFNASEA 58
Query: 72 DDGRYQCV 79
D GRYQC+
Sbjct: 59 DAGRYQCL 66
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloprotease-dependent process. Sem4D may mediate its effects in its membrane bound form, and/or its cleaved form. Length = 87 |
| >gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSR- 151
KP I T + I C GD + ++ W+ + + + V+ S
Sbjct: 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA 60
Query: 152 ---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
SL L ++ DAGEY+C A N +G+ S S L V
Sbjct: 61 RVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97 |
| >gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 24 LLECGPPRGHPEPTLVWKKNGHPIDFENSKRL--RLVDGT-NLAIQDSRKTDD--GRYQC 78
+++C +G+P PT W +NG D E R+ + GT + + + +D G YQC
Sbjct: 2 VIKC-EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQC 60
Query: 79 VVKNVAGTRESTDAVLR 95
N GT S + LR
Sbjct: 61 YASNELGTAISNEIHLR 77
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN---LAIQDSRKTDDGRYQCVV 80
LEC P P + WKKN + + N+ R+ L D L IQ++ K D G Y
Sbjct: 3 LEC-RVSAIPPPQIFWKKNNEMLTY-NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 81 KNVAG 85
N AG
Sbjct: 61 VNEAG 65
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 37 TLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA-GTREST 90
T W NG PIDF+ + +L I++++ G+Y C + V S
Sbjct: 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77
Query: 91 DAVLR 95
D ++R
Sbjct: 78 DLIVR 82
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 325 WWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
W +G + + R+++ DGSL + ++TK D G YTC ++ G A+ + L
Sbjct: 20 WSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 31 RGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88
G P PT++W+K P R ++D +L I++ D+G Y C +N+ G E
Sbjct: 8 GGDPVPTVLWRKEDGELPK-----GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62
Query: 89 STDAVLRV 96
++ A L V
Sbjct: 63 AS-ASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 323 VQWWRGEREVGSGPRVNV-TGDGS--LVLTDVTKEDSGEYTCVVKSPHGSAS 371
V W + + + RV + T S LV+ + + DSG+YT +K+P G S
Sbjct: 16 VTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 117 IVFECSVGGDAVLTVHWKRL-GSAMPED--------RMSVLPSRSLQLSDVRLEDAGEYV 167
+ CS G T+ WK G P+ R+ +L + SL + V ED+G Y+
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60
Query: 168 CEAENAVG-KISASATLTV 185
C+ N VG S S LTV
Sbjct: 61 CKVSNDVGADASKSMVLTV 79
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79 |
| >gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDD 73
V AG+ L+ P G P PT+ W + E R+R+ D ++ I+ + + D+
Sbjct: 7 VVAGNKLRLDV-PISGEPAPTVTWSRGDKAFT-ETEGRVRVESYKDLSSFVIEGAEREDE 64
Query: 74 GRYQCVVKNVAG 85
G Y V N G
Sbjct: 65 GVYTITVTNPVG 76
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 115 SIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171
+C G T+ W+ G +P D + +L LS+V+ D Y C A
Sbjct: 2 ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNAS 61
Query: 172 NAVGKISASATLTV 185
N G + A+A + V
Sbjct: 62 NVHGYLLANAFVHV 75
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 313 LRCQVRGEG---SVQWWRGEREVGSGPRV------NVTGDGSLVLTDVTKEDSGEYTCVV 363
L+C+ E +W++ +E+ + N + L + DSGEYTCVV
Sbjct: 3 LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVV 62
Query: 364 KSPHGSASWSASL 376
++ G+ + +A++
Sbjct: 63 ENILGNDTVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYT 360
R + +GSL++ ++TKEDSG YT
Sbjct: 50 RETIYPNGSLLIQNLTKEDSGTYT 73
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Also belonging to this group is the N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84-like family. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. SLAM family proteins are organized as an extracellular domain with having two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 92 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 6e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 121 CSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
CS GD T+ W + G + E + + P L + DV + D G Y C A N +G S
Sbjct: 5 CSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASV 64
Query: 180 SATLT 184
S L+
Sbjct: 65 SMVLS 69
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 8e-04
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
G+TA L+C G P P + W NG PI+ + R V L + D + +D YQC
Sbjct: 1 GETARLDC-QVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCE 59
Query: 80 VKNVAG 85
+N G
Sbjct: 60 ARNRHG 65
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDAGEYVCEA 170
CSV G + V W + G + E +L +S+V ED+G Y C
Sbjct: 8 CSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.001
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
G ++EC P+ P+P W K + N+ R+ + D +L I + K D+G Y C
Sbjct: 1 GGRVIIEC-KPKAAPKPKFSWSKGTELL--VNNSRISIWDDGSLEILNITKLDEGSYTCF 57
Query: 80 VKNVAGTRESTDAVLRV 96
+N G ST VL V
Sbjct: 58 AENNRGKANST-GVLSV 73
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.001
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 34 PEPTLVWKKNGHPIDFENSKRLRLV-DGT---NLAIQDSRKTDDGRYQCVVKNVAG 85
P P + WK+N + + N+ R+ L D + L I++ K D G Y N AG
Sbjct: 11 PPPKIFWKRNNEMVQY-NTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAG 65
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75 |
| >gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.001
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQLSD 157
+ GP T V C+ G + V W G + + R L +LQLS+
Sbjct: 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSN 62
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTV 185
+ E C AEN VG+ + S +TV
Sbjct: 63 ITSETQTTVTCTAENPVGQANVSVQVTV 90
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90 |
| >gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.001
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 313 LRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
LRC++R + S+ W + ++G R +TG+ + + D DSG Y CV SP GS +
Sbjct: 14 LRCRLRDDVQSINWTKDGVQLGENNRTRITGE-EVQIKDAVPRDSGLYACVTSSPSGSDT 72
Query: 372 W 372
Sbjct: 73 T 73
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 311 ARLRCQV-RG--EGSVQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
A L C RG E +V W + G+ RV + DG+L++ + K D G Y CV
Sbjct: 14 AVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVAT 71
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
F C + G P P+ W E P R AEI D LKI+NV+
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGE---LPKGR-----AEILDD--KSLKIRNVTAGDEGSY 50
Query: 266 ILCLGVNAAGSDLARASLTV 285
C N G A ASLTV
Sbjct: 51 T-CEAENMVGKIEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.002
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P+SQ V G C P TLVW + G + R +G L I++ + +
Sbjct: 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL----PSRAMDFNGI-LTIRNVQLS 62
Query: 72 DDGRYQCVVKNVAGTREST 90
D G Y C N+ T E+T
Sbjct: 63 DAGTYVCTGSNMLDTDEAT 81
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91
G+P P + W K+ P+ R T L++++ + D G+Y C V N AG +T
Sbjct: 20 GNPRPDITWLKDNKPLTPTEIGESRKKKWT-LSLKNLKPEDSGKYTCHVSNRAGEINATY 78
Query: 92 AV 93
V
Sbjct: 79 KV 80
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 306 PLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
P+ S RL+C G + W + + + + +L L ++ EDSG+YTC
Sbjct: 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCH 66
Query: 363 VKSPHG 368
V + G
Sbjct: 67 VSNRAG 72
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.003
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQ 66
+P+S V+ G++A C G P PT+ W + G I S + + T I
Sbjct: 9 KPRSLTVSEGESARFSCDVD-GEPAPTVTWMREGQII---VSSQRHQITSTEYKSTFEIS 64
Query: 67 DSRKTDDGRYQCVVKNVAGTRES 89
+ +D+G Y VV+N G +E+
Sbjct: 65 KVQMSDEGNYTVVVENSEGKQEA 87
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.003
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 31/85 (36%)
Query: 311 ARLRCQVRGE---GSVQWWRGEREVGSGP---------------------RVNVTGDG-- 344
L C SV W++ G GP RV ++G+G
Sbjct: 19 VTLPCSFSSSSGSTSVYWYKQPL--GKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGSK 76
Query: 345 ---SLVLTDVTKEDSGEYTCVVKSP 366
SL ++++ DSG YTC V +P
Sbjct: 77 NDFSLTISNLRLSDSGTYTCAVSNP 101
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV-YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAH 609
V +TSTSV L+W D Y+ + V G + + +TGL
Sbjct: 8 RVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEV-TPGSETSYTLTGLKP 66
Query: 610 YSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ YEF + G + PS V T
Sbjct: 67 GTEYEFRVRAVNGGGESPPSESVTVTT 93
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.004
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + + +L+ AG+Y C A+ V +SASA L V+ P
Sbjct: 49 LMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85 |
| >gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.004
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
L L +V +DAGEY C A N++G SA LTV
Sbjct: 57 LYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90 |
| >gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.004
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
L L +V EDAGEY C A N++G SA LTV
Sbjct: 57 LYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90 |
| >gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTD--DGRYQCVVKNVAG 85
+G P P+ W +NG D + ++ + T + I + K + +G YQC +N G
Sbjct: 8 KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERG 67
Query: 86 TRESTDAVLR 95
S + V+R
Sbjct: 68 AAVSNNIVIR 77
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 977 | |||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4194|consensus | 873 | 99.97 | ||
| KOG0196|consensus | 996 | 99.97 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.95 | |
| KOG4194|consensus | 873 | 99.95 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.92 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.78 | |
| KOG3515|consensus | 741 | 99.73 | ||
| KOG4258|consensus | 1025 | 99.73 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.7 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.53 | |
| KOG3515|consensus | 741 | 99.53 | ||
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.51 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.47 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.46 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.46 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.45 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.44 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.42 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.41 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.41 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.41 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.41 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.41 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.38 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.38 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.37 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.37 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.37 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.36 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.35 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.35 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.35 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.35 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.34 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.34 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.34 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.34 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.33 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.33 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.32 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.32 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.32 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.31 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.31 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.31 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.31 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.31 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.31 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.3 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.3 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.3 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.3 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.3 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.29 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.29 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.29 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.28 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.28 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.28 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.27 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.27 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.27 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.27 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.27 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.27 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.26 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.26 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.26 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.26 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.26 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.25 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.25 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.25 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.25 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.25 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.25 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.25 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.25 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.25 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.24 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.24 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.24 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.24 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.24 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.23 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.23 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.23 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.23 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.23 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.22 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.21 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.21 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.21 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.21 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.21 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.21 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.21 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.21 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.21 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.2 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.2 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.2 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.2 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.2 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.19 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.19 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.19 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.19 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.19 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.19 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.18 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 99.18 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.17 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.17 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.17 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.17 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.17 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.17 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.17 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.16 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.16 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.16 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.15 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.15 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.14 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.14 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.14 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.14 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.13 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.13 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.13 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.13 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.12 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.12 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.12 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.11 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.11 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.11 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.11 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.11 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.11 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.1 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.09 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.09 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.09 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.09 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.08 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.08 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.08 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.08 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.08 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.07 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.07 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.06 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.06 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.05 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.05 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.02 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.02 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.02 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.01 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.0 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.0 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.99 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 98.98 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 98.98 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 98.97 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.94 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.93 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 98.92 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 98.92 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 98.91 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 98.9 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 98.9 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.89 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 98.89 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.89 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 98.87 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 98.87 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.86 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.86 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 98.86 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.86 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 98.84 | |
| PHA03376 | 221 | BARF1; Provisional | 98.82 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.82 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 98.81 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.81 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.8 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.79 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.77 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 98.77 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 98.73 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 98.73 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.72 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.7 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.7 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.7 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.69 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 98.69 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.67 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.67 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.67 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.61 | |
| KOG4802|consensus | 516 | 98.61 | ||
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.59 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.58 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.58 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.57 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.56 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.56 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.56 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.56 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 98.56 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 98.56 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.54 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.53 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.52 | |
| KOG4258|consensus | 1025 | 98.5 | ||
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 98.5 | |
| KOG4802|consensus | 516 | 98.5 | ||
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.5 | |
| KOG0196|consensus | 996 | 98.48 | ||
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.48 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.46 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.44 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.44 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.44 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.42 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.42 | |
| PHA03376 | 221 | BARF1; Provisional | 98.41 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.4 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.37 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.36 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.35 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.34 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.34 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.33 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.31 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.29 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.28 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.27 | |
| PF10179 | 300 | DUF2369: Uncharacterised conserved protein (DUF236 | 98.27 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.26 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.25 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.25 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.24 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.23 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.23 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.23 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.21 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.21 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.2 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.18 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.18 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.17 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.16 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.14 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.13 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.11 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.11 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.1 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.1 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.08 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.07 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.07 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 98.06 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.06 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.05 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.03 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.02 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.0 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.99 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 97.98 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 97.98 | |
| PF14575 | 75 | EphA2_TM: Ephrin type-A receptor 2 transmembrane d | 97.97 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 97.97 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 97.94 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 97.94 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.93 | |
| KOG1480|consensus | 909 | 97.92 | ||
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 97.89 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 97.86 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.86 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 97.84 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 97.82 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.81 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 97.8 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.8 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.79 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.79 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 97.77 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.74 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 97.73 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.72 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.72 | |
| KOG0613|consensus | 1205 | 97.72 | ||
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.7 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.69 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 97.69 | |
| KOG3632|consensus | 1335 | 97.68 | ||
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.68 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.67 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.67 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.64 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.62 | |
| PF09294 | 106 | Interfer-bind: Interferon-alpha/beta receptor, fib | 97.61 | |
| KOG1480|consensus | 909 | 97.6 | ||
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.57 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.56 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 97.53 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.53 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 97.51 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.42 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.4 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.38 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.38 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.37 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.31 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.26 | |
| KOG4367|consensus | 699 | 97.25 | ||
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.24 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.24 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.22 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.18 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.17 | |
| KOG0613|consensus | 1205 | 97.14 | ||
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.1 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.07 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.04 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.04 | |
| KOG4152|consensus | 830 | 97.02 | ||
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.02 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.0 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.0 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 96.98 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.98 | |
| PF10179 | 300 | DUF2369: Uncharacterised conserved protein (DUF236 | 96.88 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 96.88 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 96.87 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 96.86 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.86 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 96.85 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 96.84 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 96.84 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 96.83 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 96.76 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 96.76 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 96.69 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 96.69 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 96.68 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 96.6 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.57 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 96.57 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.56 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 96.46 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 96.45 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 96.44 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.43 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.42 | |
| PF01108 | 107 | Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH | 96.42 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 96.41 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.37 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 96.36 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 96.31 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 96.26 | |
| PF01108 | 107 | Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH | 96.23 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 96.21 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.2 | |
| KOG4228|consensus | 1087 | 96.19 | ||
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.17 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 96.14 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 96.12 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.09 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 96.06 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 96.06 | |
| KOG4367|consensus | 699 | 96.02 | ||
| PF09294 | 106 | Interfer-bind: Interferon-alpha/beta receptor, fib | 96.01 | |
| COG3401 | 343 | Fibronectin type 3 domain-containing protein [Gene | 95.99 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 95.96 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 95.86 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 95.79 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 95.75 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 95.74 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 95.73 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 95.73 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 95.72 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 95.72 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 95.53 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 95.5 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 95.43 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 95.3 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 95.25 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.18 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.07 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 94.94 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 94.81 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 94.81 | |
| PF09067 | 104 | EpoR_lig-bind: Erythropoietin receptor, ligand bin | 94.42 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 93.8 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 93.69 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 93.62 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 93.5 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 93.33 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 93.19 | |
| KOG4806|consensus | 454 | 93.15 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 93.04 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 92.99 | |
| COG3401 | 343 | Fibronectin type 3 domain-containing protein [Gene | 92.82 | |
| KOG4597|consensus | 560 | 92.53 | ||
| KOG3632|consensus | 1335 | 91.82 | ||
| PHA02982 | 251 | hypothetical protein; Provisional | 91.28 | |
| KOG4597|consensus | 560 | 90.95 | ||
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 90.74 | |
| KOG4152|consensus | 830 | 90.59 | ||
| PF15102 | 146 | TMEM154: TMEM154 protein family | 90.52 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 89.88 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 89.7 | |
| PF09067 | 104 | EpoR_lig-bind: Erythropoietin receptor, ligand bin | 89.7 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 89.41 | |
| KOG4228|consensus | 1087 | 89.36 | ||
| PF01299 | 306 | Lamp: Lysosome-associated membrane glycoprotein (L | 89.2 | |
| PF09240 | 99 | IL6Ra-bind: Interleukin-6 receptor alpha chain, bi | 88.63 | |
| COG4733 | 952 | Phage-related protein, tail component [Function un | 88.24 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 88.13 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 88.06 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 86.68 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 85.76 | |
| PF02439 | 38 | Adeno_E3_CR2: Adenovirus E3 region protein CR2; In | 85.41 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 85.18 | |
| PF05454 | 290 | DAG1: Dystroglycan (Dystrophin-associated glycopro | 84.85 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 83.7 | |
| PF07495 | 66 | Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi | 83.48 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 83.46 | |
| KOG1225|consensus | 525 | 82.58 | ||
| PF09240 | 99 | IL6Ra-bind: Interleukin-6 receptor alpha chain, bi | 82.25 | |
| PRK14081 | 667 | triple tyrosine motif-containing protein; Provisio | 82.05 | |
| PLN02533 | 427 | probable purple acid phosphatase | 81.49 |
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-84 Score=732.00 Aligned_cols=751 Identities=35% Similarity=0.632 Sum_probs=664.2
Q ss_pred CccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 1 va~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
||+||++|++.|+++.+..|+.++|+|..+.++|++.|.|.|||+.+......++.+..+|+|.|.+++++|+|+|.|++
T Consensus 127 vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVa 206 (1281)
T KOG4222|consen 127 VAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVA 206 (1281)
T ss_pred EEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeee
Confidence 68999999999999999999999999999999999999999999999766777888888999999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEecc-ceEEEccCc
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVR 159 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~-~~L~I~~v~ 159 (977)
+|+.|++++..++|.|+++|.|...|.+..+.+|..+.|.|.+.|+|.|.+.|.|++..++..++.+..+ .+|.|.+++
T Consensus 207 tNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t 286 (1281)
T KOG4222|consen 207 TNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT 286 (1281)
T ss_pred cccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877 899999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC---CCc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP---GDR 236 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~---~~~ 236 (977)
..|+|.|.|.+.|..|...+.+.|+|+.+|.|...|.+..+..|..++|.|.+.|+|+|.++|.+.|....++. ...
T Consensus 287 p~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~ 366 (1281)
T KOG4222|consen 287 PTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSS 366 (1281)
T ss_pred CCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877773 344
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-C-CCCCCCeEEeCCCceeecCCCcEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG-P-DPNPPPVILFGPANQTLPLRSEARLR 314 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~-~~~~pp~i~~~p~~~~v~~g~~~~L~ 314 (977)
..+..+... | +|.|.+++..|.|.|. |...+..+.....+.+.+.+ . ...++|.|..++.++++.++..+.|.
T Consensus 367 ~~r~svs~~--g--~L~it~v~~~d~g~Yv-cq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~ 441 (1281)
T KOG4222|consen 367 NGRGSVSPT--G--TLTITNVRQSDEGYYV-CQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLP 441 (1281)
T ss_pred CccceecCC--C--CcccccccccccceEe-ecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccC
Confidence 566666653 5 9999999999999999 99999999888887777766 2 33788999999999999999999999
Q ss_pred EEEcc--CceEEEEECCEEcCCC-CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCC
Q psy574 315 CQVRG--EGSVQWWRGEREVGSG-PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~-~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~ 391 (977)
|.+.+ .+.|.|.++|-.+... .+..+...++|+|.++...|.|.|+|.+.+..|+..+++.|.|.+.... ..|.+.
T Consensus 442 c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s-~q~~r~ 520 (1281)
T KOG4222|consen 442 CSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS-QQFCRC 520 (1281)
T ss_pred hhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc-cccccC
Confidence 99999 7889999999876544 5666677789999999999999999999999999999999999887766 677888
Q ss_pred CCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEc
Q psy574 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTN 471 (977)
Q Consensus 392 ~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~ 471 (977)
.+++.+|++|....+.+++.+++.|+|.+....|..++.+|+|+++..+... .|.........+.+.|.+
T Consensus 521 ~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~e----------tw~~ta~~v~~t~~~I~g 590 (1281)
T KOG4222|consen 521 EDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGE----------TWQTTAGRVKTTTYAIRG 590 (1281)
T ss_pred CChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcc----------cccccccccccceeeecC
Confidence 8899999999999999999999999999988878899999999999988776 999999899999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|+|.+.|.|.|+|.|..|.+.+|..++.+++....+ .-.+.+...+.+++ .+..++...
T Consensus 591 L~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~------------------~~a~ad~~k~~~~l---s~~l~~l~~ 649 (1281)
T KOG4222|consen 591 LKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADA------------------AAAGADHQKVQREL---SNELLRLSN 649 (1281)
T ss_pred cCccceeeeeeeccccccccCCcccCCccccCCCCh------------------hhhhhhHHHHHHhh---cccceeecc
Confidence 999999999999999999999999999988832222 11355566666666 356678888
Q ss_pred eeEeCCCeEEEEEEec---CCCccceEEEEEEecCC-CCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec---ce
Q psy574 552 VKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDP-PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG---SV 624 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~---~g 624 (977)
...+++++|++.|..+ ....|.+|+|.||.... ..+|....+.. ....++.+.+|+|++.|+|++..+.. ..
T Consensus 650 ~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~-~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~ 728 (1281)
T KOG4222|consen 650 PNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTV-PTPESVVVPNLKPGTNYEFFVRPFFPHGYSI 728 (1281)
T ss_pred ccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceec-cCCcceeccccCCCccceeeccCccCCCcce
Confidence 8999999999999999 47889999999999987 56777777665 67788999999999999999999998 66
Q ss_pred eCCCCCceEEeccCCCCCCCCce---eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCe
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQL---TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPT 700 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~---v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~ 700 (977)
.|.+++...+.|.+++|+.+|.+ ++.-..+.+++.|+|.+|+.+..||.+++|.|.+...+ .....+++++....+
T Consensus 729 ~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~s 808 (1281)
T KOG4222|consen 729 QGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGS 808 (1281)
T ss_pred ecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCccccccccccccCCCCc
Confidence 78899999999999999999998 45556688999999999999999999999999998866 677778888888999
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCCCCCcccccccCCCCCCCCCCcccccccccc-cccccchhhh
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGG-AWLSAPWFIA 779 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~i~ 779 (977)
++|.+|.+|..|.|+|.|+|.+|.|+.+++..+.++..... ... +. +......+.. +..++++|++
T Consensus 809 v~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~~~se~----~~~-------~~--~~ns~~~~~s~~v~~qp~f~a 875 (1281)
T KOG4222|consen 809 VTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVFDTHSEV----LTA-------ES--DRNSETEQISVDVVNQPAFIA 875 (1281)
T ss_pred eEeccccccceEEEEEeeecCCccCCCCCCeeeecCCCcCC----ccc-------cc--ccchhhhhheeeeecCcchhe
Confidence 99999999999999999999999999999998877654410 000 00 0111223333 7788999999
Q ss_pred HHHHHHHHHHHHhe-eeEEEEeec
Q psy574 780 LLTSMVAVMALLFL-AMFFVRRRT 802 (977)
Q Consensus 780 ~v~~~~~lll~i~~-~~~~~~rr~ 802 (977)
++++.+++|++++. +|+|++|++
T Consensus 876 ~v~~a~~ii~~v~s~~~~y~~rk~ 899 (1281)
T KOG4222|consen 876 GVHRACLIIVMVFSIIWLYWRRKE 899 (1281)
T ss_pred eeeeeeeeeeeeeeeeeeeecccc
Confidence 99998888888887 666766663
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-81 Score=719.86 Aligned_cols=648 Identities=25% Similarity=0.410 Sum_probs=567.7
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.|.+. |.......|+.+.|+|.+ -|+|.|+|.|.|.|... . ..|.+... +..|.|.+++.+|+|.|+|.|.|
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~-~--~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN 315 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKP-P--PRRATYSNYGKVLKIPNVQYEDAGEYECIAEN 315 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCC-C--CcceeeeccccEEEecccCcCCCeEEEEEEec
Confidence 3555553 446889999999999999 99999999999977743 1 23444443 56799999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce---EEeccceEEEccCc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM---SVLPSRSLQLSDVR 159 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~---~~~~~~~L~I~~v~ 159 (977)
..| .....+.|+|+.+|.++..+++..+..|+++.|.|.+.|.|.|.|+|+||+.++..... ....++.|.|++|+
T Consensus 316 ~~G-~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~ 394 (1051)
T KOG3513|consen 316 SRG-SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQ 394 (1051)
T ss_pred ccc-cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecc
Confidence 999 56788999999999999999999999999999999999999999999999999864222 33478999999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeC-CeEEecCCCc--EEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMA-PIVRERPSDL--RLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~-p~~~~~p~~~--~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
..|+|.|+|.|+|..|.+.+++.|.|.+. |.|...|.+. .+..|..+.|.|...+.|.+.+.|.|.+..+ ..
T Consensus 395 ~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~-----~~ 469 (1051)
T KOG3513|consen 395 ESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL-----LQ 469 (1051)
T ss_pred cccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc-----cc
Confidence 99999999999999999999999999965 8888887776 7789999999999999999999999998833 26
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ 316 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~ 316 (977)
.+|+.+.. +| +|.|.+++.+|+|.|+ |.|.|..|.....+.|.|++ ++.|+..|.+..+..|+.+.|.|+
T Consensus 470 ~~r~~i~e--dG--tL~I~n~t~~DaG~Yt-C~A~N~~G~a~~~~~L~Vkd-----~tri~~~P~~~~v~~g~~v~l~Ce 539 (1051)
T KOG3513|consen 470 SGRIRILE--DG--TLEISNVTRSDAGKYT-CVAENKLGKAESTGNLIVKD-----ATRITLAPSNTDVKVGESVTLTCE 539 (1051)
T ss_pred CceEEECC--CC--cEEecccCcccCcEEE-EEEEcccCccceEEEEEEec-----CceEEeccchhhhccCceEEEEee
Confidence 78888876 47 9999999999999999 99999999999999999999 889999999999999999999999
Q ss_pred Ecc----CceEEEEECCEEcCCC---CcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 317 VRG----EGSVQWWRGEREVGSG---PRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 317 ~~~----~p~i~W~~~g~~l~~~---~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
+.. ...|.|.+||..+... ..+.+... +.|+|.+++..|+|.|.|.|.....+.+..+.+.|.
T Consensus 540 ~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~------- 612 (1051)
T KOG3513|consen 540 ASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR------- 612 (1051)
T ss_pred cccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEe-------
Confidence 997 5679999999977433 33433322 359999999999999999999988888889999998
Q ss_pred cccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCc--
Q psy574 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS-- 464 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-- 464 (977)
.+|+||..+.+..++++++.|+|.+..+ ++++|..|.|+++..... .|..+......
T Consensus 613 ---------gpPgpP~~v~~~~i~~t~~~lsW~~g~d-n~SpI~~Y~iq~rt~~~~-----------~W~~v~~vp~~~~ 671 (1051)
T KOG3513|consen 613 ---------GPPGPPPDVHVDDISDTTARLSWSPGSD-NNSPIEKYTIQFRTPFPG-----------KWKAVTTVPGNIT 671 (1051)
T ss_pred ---------cCCCCCCceeEeeeccceEEEEeecCCC-CCCCceEEeEEecCCCCC-----------cceEeeECCCccc
Confidence 4588899999999999999999999988 678899999999877433 89887732221
Q ss_pred --CeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhccccc
Q psy574 465 --PILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542 (977)
Q Consensus 465 --~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~ 542 (977)
.+.++-+|.|+..|+|||.|+|..|.|+||.+|+.+++.+..|...|
T Consensus 672 ~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P------------------------------- 720 (1051)
T KOG3513|consen 672 GDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNP------------------------------- 720 (1051)
T ss_pred CccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCC-------------------------------
Confidence 24679999999999999999999999999999999999777774444
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECC--CCCCcEEEEE
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG--LAHYSRYEFF 616 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~ 616 (977)
.+++......+.+.|+|++. .++.-.+|+|.||..+....|....+.. .++..+.+.+ ..|++.|+++
T Consensus 721 -----~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~-~d~~~~V~~~~st~~~tpyevK 794 (1051)
T KOG3513|consen 721 -----SNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSN-QDQPRYVVSNESTEPFTPYEVK 794 (1051)
T ss_pred -----ccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecc-cCCceEEEcCCCCCCcceeEEE
Confidence 47888888999999999997 7788899999999999877999887765 4566777776 6789999999
Q ss_pred EEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEe
Q psy574 617 LVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTV 694 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~ 694 (977)
|+|+|+.|.|+.|..+.+++.|+.|..+|..+.+...+++.+.|+|++| ...||.+++|+|+|+..+ .+......+
T Consensus 795 Vqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~--~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i 872 (1051)
T KOG3513|consen 795 VQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPP--LWDNGKLTGYEVKYWKINEKEGSLSRVQI 872 (1051)
T ss_pred EEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCc--CccCCccceeEEEEEEcCCCcccccceee
Confidence 9999999999999999999999999999999999999999999999999 667799999999999976 355566777
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.++.++..|+||+++|.|.|.|+|+|.+|.|+.|..+..+|....
T Consensus 873 ~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 873 AGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred cCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 799999999999999999999999999999999999998777766
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=641.01 Aligned_cols=654 Identities=26% Similarity=0.396 Sum_probs=559.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECC-CCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCC-----CCCeEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPP-RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-----TDDGRYQ 77 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~-~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~-----~D~G~Y~ 77 (977)
..-.|.++|.+. .+|..+.|+|.+. .+.+.+.|+|+|||..+....+.|.....||+|.|.++.. -|+|.|+
T Consensus 40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yq 117 (1381)
T KOG4221|consen 40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQ 117 (1381)
T ss_pred CcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEE
Confidence 445788899866 8999999999872 2225789999999999977767788888899999999987 7899999
Q ss_pred EEEEec-CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEE
Q psy574 78 CVVKNV-AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQL 155 (977)
Q Consensus 78 C~a~n~-~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I 155 (977)
|.|+-. .|..-++.+.|.+...+.|...+.+.++..|+++.|.|.+.+.|.+.+.|.|+..+++. +++....++.|.|
T Consensus 118 c~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I 197 (1381)
T KOG4221|consen 118 CLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEI 197 (1381)
T ss_pred EEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEe
Confidence 999877 57778999999999999999999999999999999999999999999999999998764 4666678999999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~ 228 (977)
.+++..|.|.|+|.+++.... .+..+.|+|..-| .|...|....+.+|+++.|.|.+.+.|.|.|.|.+||..
T Consensus 198 ~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~ 277 (1381)
T KOG4221|consen 198 SGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEK 277 (1381)
T ss_pred cccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCee
Confidence 999999999999999986543 4667888888333 367789999999999999999999999999999999988
Q ss_pred eeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCC
Q psy574 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g 308 (977)
+... ..++... |.+.|.|.+++..|+|.|+ |+|.|......+.+.|+|.. +|.|+..|.+.....+
T Consensus 278 i~~d----s~rivl~----g~~slliS~a~~~dSg~Yt-C~Atn~~D~idasaev~V~a-----~P~~~~~p~~l~A~e~ 343 (1381)
T KOG4221|consen 278 ISVD----SYRIVLV----GGSSLLISNATDDDSGKYT-CRATNTNDSIDASAEVTVLA-----PPGFTKAPTTLVAHES 343 (1381)
T ss_pred eeec----ceEEEEe----cccceEEeccccccCceEE-EEecCCCcccccceEEEEEc-----CCCCCCCCcceeeeec
Confidence 7532 1333333 4459999999999999999 99999988999999999998 7999999999999999
Q ss_pred CcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 309 ~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.++.|.|.+.+ .|.+.|+|||..+...+.+.+...+.|.|..+-..|.|.|+|.+.|..|.....+.+.+...+.
T Consensus 344 ~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~--- 420 (1381)
T KOG4221|consen 344 MDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA--- 420 (1381)
T ss_pred cceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc---
Confidence 99999999999 7789999999999888888888888899999999999999999999999999999886653321
Q ss_pred cccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCcC
Q psy574 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPSP 465 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~ 465 (977)
.+.....|++|..+.+...+...+.++|.+|. ..++.+..|.+.|..... .|.... ......
T Consensus 421 ----~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~------------~rer~~~tss~g~ 483 (1381)
T KOG4221|consen 421 ----SASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGD------------VRERLQNTSSPGI 483 (1381)
T ss_pred ----ccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCc------------hhhhheeccCCce
Confidence 22234678899999888888899999999888 478889999998876543 333322 233336
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCc
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGS 545 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~ 545 (977)
..++.+|.|.+.|.|+|+|.|.+|.+..|... .+.+ .+ ..
T Consensus 484 ~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pL-kV~t---~p------------------------------------Eg 523 (1381)
T KOG4221|consen 484 QVTVQNLSPLTMYFFRVRAKNEAGSGESSAPL-KVTT---QP------------------------------------EG 523 (1381)
T ss_pred EEEeeecccceeEEEEEeccCcccCCccCCce-EEec---CC------------------------------------CC
Confidence 77899999999999999999999999877532 2222 11 11
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
++. +++...+..++.+.|++| ++++|++|++.|...+ ...|.... .+..+++|.+|+|+|.|.|+|+|+|..
T Consensus 524 p~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~----~n~~e~ti~gL~k~TeY~~~vvA~N~~ 597 (1381)
T KOG4221|consen 524 PVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD-TGKELRVE----NNATEYTINGLEKYTEYSIRVVAYNSA 597 (1381)
T ss_pred Ccc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC-CCceEEEe----cCccEEEeecCCCccceEEEEEEecCC
Confidence 123 788899999999999999 8999999999999885 33343333 567999999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 702 (977)
|.|..|..+.+.|..+.|++||.||+++..++++|.|+|.+|+....||.|++|+|+|+... ........+.++.+.++
T Consensus 598 G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l 677 (1381)
T KOG4221|consen 598 GSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYL 677 (1381)
T ss_pred CCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999765 44444555666899999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+.+|+|++.|.|+|.|.|..|.|++|+.+.+.|....
T Consensus 678 ~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 678 FNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESD 714 (1381)
T ss_pred hhcCCCCceEEEEEEEeccCCCCCcccceeccCcccc
Confidence 9999999999999999999999999999999998765
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=608.79 Aligned_cols=650 Identities=25% Similarity=0.388 Sum_probs=533.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
++|..++.++++..|+++.|.|.+ .+.|.+.+.|.||.+++..+. |+....+|.|.|.+++++|.|.|+|.+++...
T Consensus 141 ~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~--r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~ 217 (1381)
T KOG4221|consen 141 ADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDS--RVIVLPSGALEISGLQPSDTGEYRCVVTGGAS 217 (1381)
T ss_pred CccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccccCCC--cEEEcCCCcEEecccccCCCceEEEEEecCCc
Confidence 678899999999999999999999 788889999999999885433 88888899999999999999999999999988
Q ss_pred eeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEeccceEEEcc
Q psy574 86 TRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSD 157 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~L~I~~ 157 (977)
.+.+..+.|+|...| .|+..|.+..+.+|+++.|.|.+.|.|.|+|.|.||+..|..+ ++.....+.|.|++
T Consensus 218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~ 297 (1381)
T KOG4221|consen 218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISN 297 (1381)
T ss_pred CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEec
Confidence 888999999998443 4678899999999999999999999999999999999998766 44445678999999
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
++.+|+|.|+|+|.|....+.+.+.|+|..+|.|...|.+..+.++.++.|.|.+.|.|.+.+.|+|+|..+. ..
T Consensus 298 a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i-----ps 372 (1381)
T KOG4221|consen 298 ATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII-----PS 372 (1381)
T ss_pred cccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccC-----cc
Confidence 9999999999999998888999999999999999999999999999999999999999999999999998774 34
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-CCCCCCeEEeCCCceeecCCCcEEEEEE
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEARLRCQ 316 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-~~~~pp~i~~~p~~~~v~~g~~~~L~C~ 316 (977)
+.+++.. ++ .|+|..+-..|.|.|+ |.+.|..|.....+.+.|... .......+...|..+.+..-+.-.+.|+
T Consensus 373 dy~ki~~--~~--~lrIlgi~~sdeg~yQ-cvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~t 447 (1381)
T KOG4221|consen 373 DYFKIVG--GG--NLRILGIVKSDEGFYQ-CVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLT 447 (1381)
T ss_pred cceEecC--CC--CcEEEEEecccchhhh-hhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEe
Confidence 5555554 23 4999999999999999 999999999998888855442 1111222333344444433333334444
Q ss_pred Ec------c-CceEEEEECCEEcCCCCcEEEecCc-eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcc
Q psy574 317 VR------G-EGSVQWWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388 (977)
Q Consensus 317 ~~------~-~p~i~W~~~g~~l~~~~~~~~~~~~-sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~ 388 (977)
.. + .+.++|++..........+.....| .+++.++++...+.++|.|.|..|....+..|.|..+
T Consensus 448 w~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~------- 520 (1381)
T KOG4221|consen 448 WRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQ------- 520 (1381)
T ss_pred ecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecC-------
Confidence 33 3 4567886643322222222223333 3667788888888889999999999999999999854
Q ss_pred cCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEE
Q psy574 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468 (977)
Q Consensus 389 ~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 468 (977)
|.+|..+.....+..++.+.|.+|.. +++++++|++.|...+.+ .|..+ ..+..+++
T Consensus 521 ---------pEgp~~~~a~ats~~ti~v~WepP~~-~n~~I~~yk~~ys~~~~~-----------~~~~~--~~n~~e~t 577 (1381)
T KOG4221|consen 521 ---------PEGPVQLQAYATSPTTILVTWEPPPF-GNGPITGYKLFYSEDDTG-----------KELRV--ENNATEYT 577 (1381)
T ss_pred ---------CCCCccccccccCcceEEEEecCCCC-CCCCceEEEEEEEcCCCC-----------ceEEE--ecCccEEE
Confidence 33444578888888999999999987 899999999999766333 66665 45678999
Q ss_pred EEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEE
Q psy574 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIE 548 (977)
Q Consensus 469 i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~ 548 (977)
|.+|.++|.|.|+|.|.|..|.|..|....+.+. .+.| + +| +.
T Consensus 578 i~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tl-sd~P----s---------aP-----------------------P~ 620 (1381)
T KOG4221|consen 578 INGLEKYTEYSIRVVAYNSAGSGVSSADITVRTL-SDVP----S---------AP-----------------------PQ 620 (1381)
T ss_pred eecCCCccceEEEEEEecCCCCCCCCCceEEEec-cCCC----C---------CC-----------------------Cc
Confidence 9999999999999999999999988876555555 3333 2 22 35
Q ss_pred EEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 549 LTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|+++...++++|+|+|.+| .++.+.+|+|+|+......+.....+. .+..++.+.+|+|+|.|.|+|.|++..|
T Consensus 621 Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~--~n~~~~l~~~Lep~T~Y~vrIsa~t~nG 698 (1381)
T KOG4221|consen 621 NLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVK--GNTTQYLFNGLEPNTQYRVRISAMTVNG 698 (1381)
T ss_pred ceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecc--cchhhhHhhcCCCCceEEEEEEEeccCC
Confidence 8999999999999999999 678899999999977754443333332 4778999999999999999999999999
Q ss_pred eCCCCCceEEeccCC-----------------------------------------------------------------
Q psy574 625 DGKPSNLRAVRTLEC----------------------------------------------------------------- 639 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~----------------------------------------------------------------- 639 (977)
.|++|+++.+.|.+.
T Consensus 699 tGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~ 778 (1381)
T KOG4221|consen 699 TGPASEWVSAETPESDLDERVPGKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYN 778 (1381)
T ss_pred CCCcccceeccCccccccccCCCCCceeeeccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEE
Confidence 999999999888764
Q ss_pred --------------------------------------------------------------------------------
Q psy574 640 -------------------------------------------------------------------------------- 639 (977)
Q Consensus 640 -------------------------------------------------------------------------------- 639 (977)
T Consensus 779 l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yT 858 (1381)
T KOG4221|consen 779 LEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYT 858 (1381)
T ss_pred EEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEE
Confidence
Q ss_pred --------------------------------------------------------------CCCCCCceeEEEEec-Cc
Q psy574 640 --------------------------------------------------------------EPSGVPQLTDPVLLN-AT 656 (977)
Q Consensus 640 --------------------------------------------------------------~P~~~P~~v~~~~~~-~~ 656 (977)
+|..||.++.+.... .+
T Consensus 859 Vr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~ 938 (1381)
T KOG4221|consen 859 VRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPT 938 (1381)
T ss_pred EEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCC
Confidence 455778888877544 68
Q ss_pred EEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 657 sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
++.|+|.|| ...||.|++|.|+|.... ...+...++.++..+..+.+|.+++.|.|+|+|+|.+|.|++|+++.+
T Consensus 939 ~v~v~WqPp--~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~y 1016 (1381)
T KOG4221|consen 939 TVIVHWQPP--TEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVLY 1016 (1381)
T ss_pred ccccccCCC--cCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCCccccceee
Confidence 999999999 999999999999998854 556677778889999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy574 734 SLTSGP 739 (977)
Q Consensus 734 ~t~~~~ 739 (977)
+|....
T Consensus 1017 ~t~~~~ 1022 (1381)
T KOG4221|consen 1017 ETSKAE 1022 (1381)
T ss_pred eccccc
Confidence 988765
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=581.24 Aligned_cols=639 Identities=24% Similarity=0.368 Sum_probs=508.9
Q ss_pred cce-ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe-ecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 7 EFR-VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 7 ~~~-~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l-~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|. .....+.+.+|+.+.|.|.+|.+.|.+.++|..++-.- ...+..|+.+..+|+|.|.++..+|.+.|.|.|.+..
T Consensus 137 ~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~ 216 (1051)
T KOG3513|consen 137 KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPS 216 (1051)
T ss_pred cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchh
Confidence 344 34556899999999999999999999999999876443 2344578999999999999999999999999999843
Q ss_pred c--eeeeEeEEEEEE-------cCCeEEeC-CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceE
Q psy574 85 G--TRESTDAVLRVL-------VKPYIIRG-PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSL 153 (977)
Q Consensus 85 g--~~~s~~~~l~V~-------~~P~~~~~-p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L 153 (977)
- ......+.|++. .+|.+... |.+.....|+.+.|.|.+.|.|.|+|.|+|.++.....+.... ...+|
T Consensus 217 ~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL 296 (1051)
T KOG3513|consen 217 TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVL 296 (1051)
T ss_pred hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEE
Confidence 2 122445566663 34655554 5577888999999999999999999999999886555554443 66899
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.|.+++.+|+|.|+|.|+|..|.....+.|+|..+|.+...+.+..+..|++++|.|.+.|.|.|+|.|++||.++..
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~-- 374 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEP-- 374 (1051)
T ss_pred EecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCce--eecCCCcE
Q psy574 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ--TLPLRSEA 311 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~--~v~~g~~~ 311 (977)
.....++.+.. | +|.|++++..|+|.|+ |.|.|..|...+++.|.|... .|.+...|... .+..|..+
T Consensus 375 ~~r~~~~~i~~---g--~L~is~v~~~dsg~YQ-C~A~Nk~G~i~anA~L~V~a~----~P~f~~~p~~~~~~a~~g~~v 444 (1051)
T KOG3513|consen 375 AERDPRYKIDD---G--TLIISNVQESDSGVYQ-CIAENKYGTIYANAELKVLAS----APVFPLNPVERKVMAVVGGTV 444 (1051)
T ss_pred cCCCcceEEeC---C--EEEEEecccccCeEEE-eeeecccceEeeeeEEEEEcc----CCCCCCCccceEEEEEeCCeE
Confidence 22333466664 5 9999999999999999 999999999999999999985 57777777766 47889999
Q ss_pred EEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCccc
Q psy574 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~ 389 (977)
.|.|...+ .|.+.|.+++..+..+.|+.+..+|+|.|.+++.+|+|.|+|.|.|..|.....+.|.|++++...+
T Consensus 445 ~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~--- 521 (1051)
T KOG3513|consen 445 TIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL--- 521 (1051)
T ss_pred EEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe---
Confidence 99999999 7789999999977888999999999999999999999999999999999999999999998764432
Q ss_pred CCCCCCCCCCCCCCCe----------EEeeCCC--ceEEEEEcCCC--CCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 390 RAPEPSTYPGPPTKPT----------LVNQTAN--GLTLAWSRNNQ--IGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 390 ~~~~~~~~p~~P~~~~----------v~~~~~~--sv~lsW~~p~~--~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
+|.+.. |....+. .+.+.|...+. +......+|.+.
T Consensus 522 ----------~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~-------------------- 571 (1051)
T KOG3513|consen 522 ----------APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIN-------------------- 571 (1051)
T ss_pred ----------ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEe--------------------
Confidence 333322 2222121 24555655433 111111222221
Q ss_pred EEeceecCcCeEEEE--ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHH
Q psy574 456 VRVATNVPSPILTVT--NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLR 533 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~ 533 (977)
. ......++|. .|+..-.|.++++.. ..+..+.....++.
T Consensus 572 ---~-~~~~g~L~i~nv~l~~~G~Y~C~aqT~---~Ds~s~~A~l~V~g------------------------------- 613 (1051)
T KOG3513|consen 572 ---D-GSDSGRLTIANVSLEDSGKYTCVAQTA---LDSASARADLLVRG------------------------------- 613 (1051)
T ss_pred ---C-CcCccceEEEeeccccCceEEEEEEEe---ecchhcccceEEec-------------------------------
Confidence 1 1111334444 477788899988873 22222222222222
Q ss_pred HHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccc---eEEECCCC
Q psy574 534 RARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEAS---GFLVTGLA 608 (977)
Q Consensus 534 ~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~---~~~i~~L~ 608 (977)
++.++.++++..++.++++|+|++. ++.+|..|.|+++..- ...|+... ..+.... +.++-+|.
T Consensus 614 ---------pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~-~~~W~~v~-~vp~~~~~~~sa~vv~L~ 682 (1051)
T KOG3513|consen 614 ---------PPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPF-PGKWKAVT-TVPGNITGDESATVVNLS 682 (1051)
T ss_pred ---------CCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCC-CCcceEee-ECCCcccCccceeEEccC
Confidence 1222246899999999999999998 6688999999999884 78998877 3333333 68899999
Q ss_pred CCcEEEEEEEEeecceeCCCCC-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-C
Q psy574 609 HYSRYEFFLVPFFGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-N 686 (977)
Q Consensus 609 p~t~Y~~~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~ 686 (977)
|+..|+|+|+|.|..|.|.+|. +..++|.+++|...|.+|.......+.+.|+|+|.+...+||.-.+|+|.|+..+ .
T Consensus 683 Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~ 762 (1051)
T KOG3513|consen 683 PWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGAD 762 (1051)
T ss_pred CCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCC
Confidence 9999999999999999999996 6779999999999999999988888999999999998899999999999999987 4
Q ss_pred cceEEEEe-cCCcCeEEecC--CCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 687 SALINMTV-SASTPTLLLTN--LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 687 ~~~~~~~~-~~~~~~~~l~~--L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
..+....+ +.+...+.+.+ -.|.+.|.+.|+|+|..|.|+.|+.+.+...+..
T Consensus 763 ~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~ 818 (1051)
T KOG3513|consen 763 KEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE 818 (1051)
T ss_pred cccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence 25554444 44445555544 4568999999999999999999999999888766
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=435.80 Aligned_cols=660 Identities=25% Similarity=0.324 Sum_probs=486.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEEEEcCCC-----CCCCeEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSR-----KTDDGRYQ 77 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L~I~~v~-----~~D~G~Y~ 77 (977)
.+.+...|.+..+..|+.++|.|.+ .|.|+|+|+|+|+|+...... +.|+-+ .+|+|.+-.+- ..|.|.|+
T Consensus 31 ~p~iiehp~d~vvs~~~patlnc~a-sG~ppPti~w~k~G~~~~~~e~~shR~~l-p~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 31 PPRIIEHPHDLVVSKGEPATLNCKA-SGDPPPTIEWYKDGENVFKGEPGSHRFLL-PDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred CCceEecchhhhccCCCCceeecCC-CCCCCCceecccCCcccCCCCCCCcceec-CCccEEEEecccCCcccCCCceeE
Confidence 4667788999999999999999999 999999999999997554322 334444 46776654332 23999999
Q ss_pred EEEEecCceeeeEeEEEEEEcC-CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---CCceEEeccce
Q psy574 78 CVVKNVAGTRESTDAVLRVLVK-PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVLPSRS 152 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~-P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~ 152 (977)
|++.|..|+..+..+.|.|... -.|-..|.+..+..|+.+.|.|.- .|.|.+.+.|.|+|..+. ..++.+..++.
T Consensus 109 cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~ 188 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN 188 (1281)
T ss_pred eeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc
Confidence 9999999999998888887743 467778888899999999999987 789999999999999886 24555668999
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
|.|.++...|+|.|.|++.|.+|. .+..++|+|+..|.|...|.+..+..|..+.|.|.+.|.|.|.+.|.+++..+
T Consensus 189 LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~-- 266 (1281)
T KOG4222|consen 189 LLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL-- 266 (1281)
T ss_pred EEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCC--
Confidence 999999999999999999999998 55679999999999999999999999999999999999999999999977655
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcE
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
...++.+... ..+|.|.++...|.|.|. |.|.|..|.....+.++|+. +|.+...|.+..+..|..+
T Consensus 267 ----P~~ry~i~~d---~qtl~i~r~tp~deg~y~-C~a~n~vG~l~asa~ltV~a-----pP~f~kkp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 267 ----PRSRYSILDD---TQTLRIDRVTPTDEGTYV-CPAENLVGGLEASATLTVQA-----PPSFGKKPRDQKVALGGTV 333 (1281)
T ss_pred ----Cccceeeeec---cccccccccCCCccccee-eeccccccccccccceEEec-----CcccccccCccccccCceE
Confidence 4567776652 348999999999999999 99999999999999999999 8899999999999999999
Q ss_pred EEEEEEcc--CceEEEEECCEEc--------CCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC-
Q psy574 312 RLRCQVRG--EGSVQWWRGEREV--------GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES- 380 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l--------~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~- 380 (977)
+|.|.+.+ .|.+.|.+.|... ....+..+...++|+|.+++..|.|.|.|...+..|.....+.+.+.+
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 99999999 7789999987643 223677777888999999999999999999999998876666665542
Q ss_pred ----CCCCCCcccCCCCCCCCC-CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 381 ----PTNPNIGFFRAPEPSTYP-GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 381 ----~~~~~~~~~~~~~~~~~p-~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
.|.+.+... +....++ ..-..+.+.........+.|-.... .|. .|
T Consensus 414 ~~~~rPpp~i~~g--~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~---------~v~------------------~~ 464 (1281)
T KOG4222|consen 414 LTDSRPPPIIEQG--PANQTLPVGSTASLPCSATGAPTPNISWLKDGC---------NVM------------------NP 464 (1281)
T ss_pred eccCCCCceeeec--ccccccccCcccccChhhhCCCCCCchhhhccc---------ccc------------------cC
Confidence 122211100 0000011 0011112223333344555543322 010 01
Q ss_pred EEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHH
Q psy574 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~ 535 (977)
..-.......+..+.+|+-...|.+.+.|.+..|.+.+|. ..++....... +-.+-.|+..+
T Consensus 465 d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa---tl~v~~~~~s~---------------q~~r~~D~S~~ 526 (1281)
T KOG4222|consen 465 DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSA---TLTVEKAGSSQ---------------QFCRCEDPSAL 526 (1281)
T ss_pred CcccceeeeceeeeeeeecCCCcceeeeccCcccccccce---eeEhhhcCccc---------------ccccCCChhhC
Confidence 1000111234567888888888999999999988887663 23221110000 00000011111
Q ss_pred hhcccccCCceEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcE
Q psy574 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSR 612 (977)
Q Consensus 536 ~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 612 (977)
+... .--.+..++.++++|+|.+. +..++.+|.++|...+....|....-. ...+.+.|.+|+|.+.
T Consensus 527 pS~p--------~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~--v~~t~~~I~gL~P~~s 596 (1281)
T KOG4222|consen 527 PSPP--------GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGR--VKTTTYAIRGLKPNLS 596 (1281)
T ss_pred CCCC--------CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccc--cccceeeecCcCccce
Confidence 1111 11345678899999999998 357889999999887777777665443 3568899999999999
Q ss_pred EEEEEEEeecceeCCCCC-ceEEeccCCCCCCCC------------ceeE---EEEecCcEEEEEeeCCCCCCCCeeeeE
Q psy574 613 YEFFLVPFFGSVDGKPSN-LRAVRTLECEPSGVP------------QLTD---PVLLNATSVLLKWKPPPVGTHNGVIRT 676 (977)
Q Consensus 613 Y~~~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P------------~~v~---~~~~~~~sv~v~W~~p~~~~~ng~i~~ 676 (977)
|.|.|+|+|..|.+.++. .-.++|.+..+...- ..++ ...++.++|.+.|..+. .+..+.|.+
T Consensus 597 ylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~k-q~~~~~i~g 675 (1281)
T KOG4222|consen 597 YLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDK-QHGSQYIQG 675 (1281)
T ss_pred eeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeec-ccCcccccc
Confidence 999999999999887764 333555544332110 0122 23457789999999874 445678999
Q ss_pred EEEEEEecC---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCc---CCCCCceEEeecCCC
Q psy574 677 YQIIVGGGN---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT---GPYSRPALLSLTSGP 739 (977)
Q Consensus 677 Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~---g~~S~~~~~~t~~~~ 739 (977)
|+|.|+... ..............++.+.+|+|++.|+|.++-+...|. |..|.+..+.|....
T Consensus 676 ~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~ 744 (1281)
T KOG4222|consen 676 YRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEP 744 (1281)
T ss_pred eEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccC
Confidence 999999865 222223333456788999999999999999999988664 667777766665433
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=275.10 Aligned_cols=275 Identities=28% Similarity=0.454 Sum_probs=231.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCC-CCCCeEEEEeCCEEeec---CCCceEEEec-----------CcEEEEcCC
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDF---ENSKRLRLVD-----------GTNLAIQDS 68 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g-~P~~~v~W~k~g~~l~~---~~~~r~~~~~-----------~g~L~I~~v 68 (977)
++|+++.+|.++....|+.++|+|.+.+. ..+..+.|+|+++.... ++..++.... .+.|.+.||
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 67899999999999999999999998332 33458999998875431 1111111111 145999999
Q ss_pred CCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCee-CCCC---c
Q psy574 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPED---R 144 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-l~~~---~ 144 (977)
+..|+|.|+|+++|..|+..+..++|+|...|.|...|.+.++..|+.+.|.|.+.|.|.|+|.|.|+|+. .+.. |
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 5542 3
Q ss_pred eEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEE
Q psy574 145 MSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFW 222 (977)
Q Consensus 145 ~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W 222 (977)
.++. .+..+.|.+|..+|.|.|+|.|.|.+|.+++.++|+|...|.+..+..+..|..|+++.|.|.+.+.|. |.+.|
T Consensus 662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence 3443 678899999999999999999999999999999999999999999999999999999999999999888 89999
Q ss_pred EEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 223 MLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+|+++++...... .. .++...|.+.+...+|+|.|+ |...|..|.......+.+..
T Consensus 742 ~k~d~pil~t~rh-----~f---~d~dQllvv~~~~~~daG~yT-cem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 742 FKEDKPILITERH-----TF---PDGDQLLVVKENLVEDAGIYT-CEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred cCCCCceEEeecc-----cC---CCCCeEEEEEehhhhhcceEE-EEEEeeccceeeEEEEEEee
Confidence 9999988654321 11 134448889999999999999 99999999877666665554
|
|
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=277.48 Aligned_cols=299 Identities=20% Similarity=0.240 Sum_probs=225.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
.+|++|.++... ++.+++.|+|.+|.+.|+.....|.|.++.+....+.|..|.++..+..-...+.++++++.+|.|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 578999998654 9999999999999999999999999999999988889999999999999888999999999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
++|+|.|.|+| |.|..++. ++
T Consensus 409 ~~YTFeV~AvN--gVS~lsp~-------------------------~~-------------------------------- 429 (996)
T KOG0196|consen 409 TNYTFEVEAVN--GVSDLSPF-------------------------PR-------------------------------- 429 (996)
T ss_pred cccEEEEEEee--cccccCCC-------------------------CC--------------------------------
Confidence 99999999999 66543321 00
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
....+.++
T Consensus 430 ------------------------------------------------------------------------~~a~vnIt 437 (996)
T KOG0196|consen 430 ------------------------------------------------------------------------QFASVNIT 437 (996)
T ss_pred ------------------------------------------------------------------------cceeEEee
Confidence 12236778
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
|.+.+|+ +..+++......++|.|+|..| +.+||.|..|+|+|.+++.+......+....+.++|.+|+|++.|.|+
T Consensus 438 t~qa~ps-~V~~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~Yvfq 514 (996)
T KOG0196|consen 438 TNQAAPS-PVSVLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQ 514 (996)
T ss_pred ccccCCC-ccceEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEE
Confidence 8888887 5568998998999999999999 899999999999999977555566677778899999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeecCCCCCCcccccccCCCCCCCCCCcccccccccccccccchhhhHHHHHHHHHH--HHhe
Q psy574 716 LAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWLSAPWFIALLTSMVAVMA--LLFL 793 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~lll--~i~~ 793 (977)
|||+|.+|.|++|.+..|+|.+... ......+..++++.++++++++| +++.
T Consensus 515 VRarT~aG~G~~S~~~~fqT~~~~~--------------------------~~~~~~~l~~i~g~~~~~v~~lll~~vv~ 568 (996)
T KOG0196|consen 515 VRARTAAGYGPYSGKHEFQTLPSES--------------------------SSQSGEQLPLIIGSILAGVVFLLLAAVVV 568 (996)
T ss_pred EEEecccCCCCCCCceeeeecCccc--------------------------ccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877520 00111233455544443333332 2222
Q ss_pred eeEEEEee-ccccccc--------ccCC--CCCCCCceeeccccccccCCCCCCCCCCCCCceeeecCCCCCCC
Q psy574 794 AMFFVRRR-TLHAKKS--------SLDH--NSAGPGLLATPISLKAASGLPHPGGGLTTANEGLWIDGKAGAGL 856 (977)
Q Consensus 794 ~~~~~~rr-~~~~k~~--------~~~~--~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 856 (977)
+.++++|| ..+.++. .+.. ...|+++|++|++||+|++|+|.-.. -...+++-|+.-=|.+.
T Consensus 569 ~~~~~~r~~~~~~~~~~~~t~~~~~~~~~~~~pG~k~YiDP~TYEDPnqAvreFak-EId~s~i~Ie~VIGaGE 641 (996)
T KOG0196|consen 569 VAIVCSRKRCGYSRAEQEYTEKLQHYSNGEQLPGTKTYIDPHTYEDPNQAVREFAK-EIDPSCVKIEKVIGAGE 641 (996)
T ss_pred HhheeecccccchhcccCCChhHhhhhcCCCCCCceeecCCccccCccHHHHHhhh-hcChhheEEEEEEeccc
Confidence 33333333 1222221 1111 23579999999999999999987421 12456666665544444
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=248.33 Aligned_cols=257 Identities=19% Similarity=0.318 Sum_probs=189.1
Q ss_pred ceEEeCCCcEEEEEEC----CCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 14 SQRVAAGDTALLECGP----PRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~----~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
...+.+|+.+.|.|.+ ..|.|.+.|.|+|+|... ..++.+..+..|.|.+++.+|+|.|+|++.|..|...
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~- 109 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDM- 109 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceE-
Confidence 3567899999999975 268899999999998543 1233444344599999999999999999999887633
Q ss_pred EeEEEEEEcC--CeEEeCCCceEEeCCCeEEEEEE-----ecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 90 TDAVLRVLVK--PYIIRGPKDTTVSASSIIVFECS-----VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 90 ~~~~l~V~~~--P~~~~~p~~~~v~~G~~v~l~C~-----v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
..+.|+|... |.+...+....+.+|+.+.|.|. ..++|.+.|+|+++. .+...++....++.|.|.+++.+|
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence 5577777643 33433445567789999999997 246788999999865 455556666567899999999999
Q ss_pred CeEEEEEEEeCCeeEE----EEEEEEEee--CCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeeeeecC
Q psy574 163 AGEYVCEAENAVGKIS----ASATLTVQM--APIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRSLIYP 233 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~----~~~~L~V~~--~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~~~~~ 233 (977)
+|.|+|.|.|..|... ..+.|.|.. .|.....|....+..|+.++|.|.+.+.|.+ .+.|++||..+....
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~ 268 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDD 268 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcC
Confidence 9999999999877543 344566652 2233455677788899999999999998864 799999998764322
Q ss_pred CCccccEEEEEcc-------CCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 234 GDRVDNIQAEITS-------DGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 234 ~~~~~~~~~~~~~-------~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
....+++...... .....|+|.+++.+|.|.|+ |.|.|..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~-C~A~n~~~~~ 318 (326)
T PHA02785 269 EDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFT-CMAFTIPSIS 318 (326)
T ss_pred CCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeE-EEEEeccCce
Confidence 1222344332210 01248999999999999999 9999987433
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=249.61 Aligned_cols=272 Identities=26% Similarity=0.460 Sum_probs=228.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecc--cCceEEEEEECCeeCCCCceE----Ee-------------ccceEEEccC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMS----VL-------------PSRSLQLSDV 158 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~~l~~~~~~----~~-------------~~~~L~I~~v 158 (977)
.+|.+...|.++....|+.++|+|.+.+ ..+..+.|.+++...+....+ +. -.+.|.+.+|
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 3578889999999999999999999955 456689999997754321110 00 1246999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+..|+|.|+|+++|..|+ .+..++|+|...|.|...|.+..+..|+.+.|.|.+.|.|.|+|.|.|+|.. .++....
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt--dFPAA~e 659 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT--DFPAARE 659 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC--CCchhhh
Confidence 999999999999999997 6778999999999999999999999999999999999999999999999875 2344556
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEE
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV 317 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~ 317 (977)
.|..+... +. .+.|.++..+|.|.|+ |.|.|.+|...+.+.|.|.+ .|.+..+..+..+..|+++.|.|.+
T Consensus 660 RRl~Vmpe-dd--~f~Itnvk~eD~GiYt-C~A~n~AG~isanAtL~V~e-----~p~f~~PL~~~~V~~get~vlqC~a 730 (873)
T KOG4194|consen 660 RRLHVMPE-DD--VFFITNVKIEDQGIYT-CTAQNVAGQISANATLTVLE-----TPSFSIPLEDQLVVVGETLVLQCLA 730 (873)
T ss_pred heeeecCC-CC--EEEEecccccccceeE-EeeeccccceeeceEEEEec-----CCcccccccceEEEecceEEEEEec
Confidence 67777765 34 8999999999999999 99999999999999999999 5667777889999999999999999
Q ss_pred cc---CceEEEEECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 318 RG---EGSVQWWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 318 ~~---~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.+ .|.+.|+|++.++.-.++-.... +.-+.+.+....|+|.|+|...|..|.......+.+..
T Consensus 731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 99 47899999998876554444333 33578888889999999999999999888777776653
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=228.33 Aligned_cols=246 Identities=17% Similarity=0.281 Sum_probs=183.4
Q ss_pred ceEEeCCCeEEEEEEe-----cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-----~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
...+.+|+.+.|.|.+ .|.|.+.+.|+|++..... ...+..+..|.|.++..+|+|.|+|.|.|..+.....+.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 3356689999999997 6889999999999754321 122223445889999999999999999999988888888
Q ss_pred EEEeeC--CeEEecCCCcEEeeCCeEEEEEE-----EecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 183 LTVQMA--PIVRERPSDLRLEVGRDAVFLCG-----IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 183 L~V~~~--p~~~~~p~~~~v~~G~~v~L~C~-----~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
|+|... +.+...+....+.+|..+.|.|. ..+.+++.+.|+++.. + ...++.... .+ .|.|.
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~------~~~r~~~~~--~~--~L~i~ 182 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L------RNKRLKQRT--PG--IITIE 182 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c------CCcceEecC--CC--eEEEe
Confidence 888743 33333444567789999999997 2467889999987542 1 234444432 24 89999
Q ss_pred ecccCCCCeEEEEEEEcCCCceeE----EEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C----ceEEEE
Q psy574 256 NVSRTAAPLIILCLGVNAAGSDLA----RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E----GSVQWW 326 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~~g~~~~----~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~----p~i~W~ 326 (977)
+++.+|.|.|+ |.|.|..|.... .+.|.|.. ...||.+ ..|....+..|+.++|.|.+.+ + +.+.|+
T Consensus 183 ~v~~~d~G~Y~-C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~ 258 (326)
T PHA02785 183 DVRKNDAGYYT-CVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI 258 (326)
T ss_pred ecChhhCeEEE-EEEEeccCCEEEeEEEEEEEEEec--cCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence 99999999999 999999887643 33455543 2335554 4467778889999999999998 2 479999
Q ss_pred ECCEEcCCC-----CcEEEec-----------CceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 327 RGEREVGSG-----PRVNVTG-----------DGSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 327 ~~g~~l~~~-----~~~~~~~-----------~~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
+||..+... .++.... .+.|+|.+++..|.|.|+|.|.|..|.
T Consensus 259 kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 259 SNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred ECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 999987532 2332211 346999999999999999999998854
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-18 Score=171.29 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=120.6
Q ss_pred ccceEEeCCCcEEEEEECCCCC-----------CCCeEEEEeCCEEeec-CCCce--------EE-EecCcEEEEcCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGH-----------PEPTLVWKKNGHPIDF-ENSKR--------LR-LVDGTNLAIQDSRK 70 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~-----------P~~~v~W~k~g~~l~~-~~~~r--------~~-~~~~g~L~I~~v~~ 70 (977)
...+.+.+|++|.|.|.+ .+. ..+.|.|+|++...-. ....| -. ...+++|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 356889999999999987 343 3458999998865211 11111 01 12256899999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEec-----ccCceEEEEEECCeeCCC-Cc
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG-----GDAVLTVHWKRLGSAMPE-DR 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-----g~p~~~i~W~k~~~~l~~-~~ 144 (977)
+|+|.|+|.|.|..+.. ...+.|.|..+ +.+..+.+|+++.|.|.+. +.|.|.|+|+|++..+.. ++
T Consensus 108 ~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 108 IDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred HHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 99999999999977653 34567777432 2345678999999999985 346789999999999864 45
Q ss_pred eEEe-ccceEEEccCccCCCeEEEEEEEeCC-ee---EEEEEEEEE
Q psy574 145 MSVL-PSRSLQLSDVRLEDAGEYVCEAENAV-GK---ISASATLTV 185 (977)
Q Consensus 145 ~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~---~~~~~~L~V 185 (977)
+.+. .++.|.|.+++.+|+|.|+|.|.... |. +++.++|+|
T Consensus 181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred EEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 5444 34589999999999999999999753 32 455555554
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=173.67 Aligned_cols=353 Identities=17% Similarity=0.252 Sum_probs=230.7
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEe
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 91 (977)
+-+..+..|+.|.|.|.+..++|.+.|.|++.+..+. .|.....+..|......++.-+.|.|.+.|..+......
T Consensus 14 ~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~ 89 (741)
T KOG3515|consen 14 SLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCP 89 (741)
T ss_pred CCChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecc
Confidence 3345899999999999997778889999999988884 455555577888888888888999999999987777777
Q ss_pred EEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe--cccCceEEEEEECCeeCCCC---ce---------EEeccceEEEcc
Q psy574 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSV--GGDAVLTVHWKRLGSAMPED---RM---------SVLPSRSLQLSD 157 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v--~g~p~~~i~W~k~~~~l~~~---~~---------~~~~~~~L~I~~ 157 (977)
..+.|..+|.-...........+..+.+.|.+ .+.|.+.+.|..++...... +. .......|.+..
T Consensus 90 ~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v 169 (741)
T KOG3515|consen 90 MILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTV 169 (741)
T ss_pred eeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEE
Confidence 78888888876666666677889999999965 66788999999987643210 00 112345688888
Q ss_pred CccCCCeEEEEEEEeCCe---eEEEEEEEEEeeCC--eEEecC-CCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeee
Q psy574 158 VRLEDAGEYVCEAENAVG---KISASATLTVQMAP--IVRERP-SDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSL 230 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~~p--~~~~~p-~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~ 230 (977)
...+|.|.|+|.|.|... ..-....+.|..+. ...... ....+.+|+.+.|.|.+. ++|.+.++|+++.....
T Consensus 170 ~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 170 SRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred EEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 889999999999998532 22233334443222 122222 235889999999999774 58889999999876653
Q ss_pred ecCCCccccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCC
Q psy574 231 IYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~ 309 (977)
.. .........+.. +++.+..-...+.-... |.+.| .+ .....+.+... +......+....+..|+
T Consensus 250 ~~-----sl~~~~~sg~~v~~~~~~~~~r~~~~~~~k-c~a~n-~~--~~~~~tav~~~----~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 250 ES-----SLLSQEPSGDTVSSTLVLRVGRQDLQAQLK-CKASN-LL--AASQITAVQVK----PTAVPISTSDSGLSSGR 316 (741)
T ss_pred hh-----hcccCCCCCCcccccccccccccchhhhhh-ccccC-cc--ccceeeecccc----cccccccCccccccccc
Confidence 21 001000110111 23333333333444556 99988 11 12222333321 11222333444588899
Q ss_pred cEEEEEEEcc---CceEEEEECCEEcCCCCcEEE--ecCc-----eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 310 EARLRCQVRG---EGSVQWWRGEREVGSGPRVNV--TGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 310 ~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~--~~~~-----sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
...+.|...+ ...+.|+++............ ...+ .+........+.|.|+|.|.+.......+....+.
T Consensus 317 s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~ 396 (741)
T KOG3515|consen 317 SARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP 396 (741)
T ss_pred ccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence 9999999988 567999996654433211110 1111 24445666779999999999988655555554444
Q ss_pred CC
Q psy574 380 SP 381 (977)
Q Consensus 380 ~~ 381 (977)
..
T Consensus 397 ~l 398 (741)
T KOG3515|consen 397 VL 398 (741)
T ss_pred cc
Confidence 33
|
|
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=176.58 Aligned_cols=300 Identities=17% Similarity=0.270 Sum_probs=194.1
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC---CCCCCCCcccEEEeceecC--------cCeE
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS---SPSGDTATATWVRVATNVP--------SPIL 467 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~--------~~~~ 467 (977)
....++.....+.+++.++|.+-...+-....+|.+.|+....... .-.....+..|........ ..-+
T Consensus 489 ~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~ 568 (1025)
T KOG4258|consen 489 DLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGF 568 (1025)
T ss_pred cceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccce
Confidence 3344455566678899999987665556778999999987654320 0001233446776653322 2246
Q ss_pred EEEccCCCCeEEEEEEEEcC--CCCCC-CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCC
Q psy574 468 TVTNLTVGLTYTFLVRALNS--HGLSA-PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGG 544 (977)
Q Consensus 468 ~i~~L~p~t~Y~~~V~a~n~--~G~s~-~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~ 544 (977)
.+.+|+|+|.|.+.|++... .+... .-.....+.+..+.| + ||
T Consensus 569 ~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P----s---------pP--------------------- 614 (1025)
T KOG4258|consen 569 LLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP----S---------PP--------------------- 614 (1025)
T ss_pred ehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC----C---------Cc---------------------
Confidence 79999999999999998732 22221 111223333322222 2 22
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCC-----------------------CceEEE-------
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA-----------------------SVAMLT------- 592 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~-----------------------~~~~~~------- 592 (977)
.++-...-+++.|.|+|++| +++.++.|.|.|+....+. .|+...
T Consensus 615 ---l~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~ 691 (1025)
T KOG4258|consen 615 ---LDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEG 691 (1025)
T ss_pred ---chhhhccCcchheeEEecCCCCCCCceeEEEEEEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhcc
Confidence 34445556677899999999 8999999999998654210 010000
Q ss_pred -------------------------------------Ee-------------------e---------------------
Q psy574 593 -------------------------------------VL-------------------H--------------------- 595 (977)
Q Consensus 593 -------------------------------------~~-------------------~--------------------- 595 (977)
+. .
T Consensus 692 ~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e 771 (1025)
T KOG4258|consen 692 HTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEE 771 (1025)
T ss_pred CCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeecccCcccccccccccceeeccccccccCCCCCCCCCCccccc
Confidence 00 0
Q ss_pred ------cCccceEEECCCCCCcEEEEEEEEeeccee----CCCCCceEEeccCCC-CCCCCceeEEEEe-cCcEEEEEee
Q psy574 596 ------AGEASGFLVTGLAHYSRYEFFLVPFFGSVD----GKPSNLRAVRTLECE-PSGVPQLTDPVLL-NATSVLLKWK 663 (977)
Q Consensus 596 ------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~----g~~s~~~~~~T~~~~-P~~~P~~v~~~~~-~~~sv~v~W~ 663 (977)
..+..++.|++|+++|.|.+.++|+|..+. +.. ..+..+|.... -...|.-+..... +.+++.|+|.
T Consensus 772 ~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~ 850 (1025)
T KOG4258|consen 772 PKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKCGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWL 850 (1025)
T ss_pred cCcccccccchhhhhhccccchhhhhhHhhhcccccccccchh-hhhhhccccccccccCCCceeEecccCcceEEEecC
Confidence 023347889999999999999999998776 322 22333443322 2223333444433 7789999999
Q ss_pred CCCCCCCCeeeeEEEEEEEecCCcceEE---EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 664 PPPVGTHNGVIRTYQIIVGGGNNSALIN---MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 664 ~p~~~~~ng~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+| ..+||.|..|.|.|+....+.... ...-.....+.+.+|.+| .|.++|+|.+.+|.|++.+++.|......
T Consensus 851 EP--~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~~~ 926 (1025)
T KOG4258|consen 851 EP--KEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSDED 926 (1025)
T ss_pred CC--CCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEecCc
Confidence 99 899999999999999754222111 111234567889999998 79999999999999999999987665433
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=158.24 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=119.0
Q ss_pred CceEEeCCCeEEEEEEecccC-----------ceEEEEEECCeeC----CCCc--------eE-EeccceEEEccCccCC
Q psy574 107 KDTTVSASSIIVFECSVGGDA-----------VLTVHWKRLGSAM----PEDR--------MS-VLPSRSLQLSDVRLED 162 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p-----------~~~i~W~k~~~~l----~~~~--------~~-~~~~~~L~I~~v~~~D 162 (977)
....+.+|+++.|.|.+.+.| .+.+.|+|++... ...+ .. ...+++|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999986643 4589999997542 1111 01 1135689999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-----cCCCCeEEEEEcCeeeeecCCCcc
Q psy574 163 AGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-----GSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-----g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+|.|+|.|.|..+.....+.|.|..+ +.+..+.+|+.++|.|.+. +.|.|+|.|+|+|.++. ..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-----~~ 178 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-----YT 178 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-----CC
Confidence 99999999998888888888888532 2345678999999999985 34678999999998864 23
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.++.+.. +...|.|.+++.+|+|.|+ |.|....+..
T Consensus 179 ~r~~~~~---~~~~L~I~~V~~~DsG~Yt-C~a~~~~~g~ 214 (227)
T PHA02826 179 DRIQLRN---NNSTLVIKSATHDDSGIYT-CNLRFNKNSN 214 (227)
T ss_pred CCEEEeC---CCCEEEECcCCHHhCEEEE-EEEEEeECCE
Confidence 3555443 2238999999999999999 9999875433
|
|
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=120.44 Aligned_cols=88 Identities=30% Similarity=0.440 Sum_probs=78.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 57888899999999999999999999999999999999988865433333567899999999999999999999999999
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..++|.|+
T Consensus 81 ~~~~l~V~ 88 (88)
T cd05851 81 HQARVYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 99998874
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-13 Score=151.19 Aligned_cols=484 Identities=16% Similarity=0.135 Sum_probs=287.7
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-----EEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-----NLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
..+.+|+.+.|.|.+..++|.+.++|+++...+... ..+....+| ++....-+..+.-...|.+.|. . .
T Consensus 216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~--sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~---~ 289 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES--SLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-L---A 289 (741)
T ss_pred CcccccceEEEEehhhcCCcchhhhhccccccchhh--hcccCCCCCCcccccccccccccchhhhhhccccCc-c---c
Confidence 678999999999988899999999999998877432 111111122 3555555555566888999871 1 1
Q ss_pred EeEEEEEEcCCeE-EeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC----c----eEEeccceEEEccCc
Q psy574 90 TDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED----R----MSVLPSRSLQLSDVR 159 (977)
Q Consensus 90 ~~~~l~V~~~P~~-~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~----~----~~~~~~~~L~I~~v~ 159 (977)
....+.|..+|.- ...+....+..|++..+.|.. ..+|...+.|+|+....... + ........+......
T Consensus 290 ~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~ 369 (741)
T KOG3515|consen 290 ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS 369 (741)
T ss_pred cceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc
Confidence 2234455544432 233445568889999999986 66788899999965433211 0 001122346667777
Q ss_pred cCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEe-cCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCC
Q psy574 160 LEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~ 235 (977)
..|.|.|+|.+.+.... .+....|.+..+|.+.. ........+++.....-.+.++| .+.+.|.+.+.++...
T Consensus 370 ~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~--- 446 (741)
T KOG3515|consen 370 QQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQV--- 446 (741)
T ss_pred hhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccc---
Confidence 89999999999987654 33445556655555433 33333444555444443333544 4578999988776321
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C 315 (977)
....+.+... .+ ...+.++.+.|.|.|. |.+.|..|.......+.+.. .|.+..--.......+.++.+.|
T Consensus 447 ~g~~~~v~~~-~~--~~s~~~v~~~d~g~y~-~tatns~gg~~~~~~~~~~~-----sp~~~~~~~~~~~~~~ns~~~~~ 517 (741)
T KOG3515|consen 447 DGGVVRVGAG-AG--LGSGVNVSRSDGGSYG-LTATNSPGGAQAYLLLGVHT-----SPHNHHLQDQVEGATGNSVDGEC 517 (741)
T ss_pred cCceEEeecc-cc--ccccceeeeccCCcce-eeeccCCCceeeEEeecccc-----CCcccccccccccCCCCccccee
Confidence 1122222221 12 4556779999999999 99999999988887777776 33333222334455666788999
Q ss_pred EEcc----CceEEEEECCEEcCCC-----CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 316 QVRG----EGSVQWWRGEREVGSG-----PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 316 ~~~~----~p~i~W~~~g~~l~~~-----~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.... .-.+.|.+.+...... .......++.+.+........+.|.|.+.+..--+.....+.+...+....
T Consensus 518 ~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~ 597 (741)
T KOG3515|consen 518 MQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTV 597 (741)
T ss_pred eccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccc
Confidence 9988 2348899887755322 223334455677777777788999999998222233333343332211100
Q ss_pred cccCCCCCCCCCCCCC----CCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceec
Q psy574 387 GFFRAPEPSTYPGPPT----KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV 462 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~----~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 462 (977)
+.+...-..+. .+.+......+....|.......-.....|..-+ |.. ..
T Consensus 598 -----~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~------------------~~~---~~ 651 (741)
T KOG3515|consen 598 -----RTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKAT------------------QQG---QT 651 (741)
T ss_pred -----cCCceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeee------------------ecc---cc
Confidence 00000000011 1111222233455566554431111111111111 111 01
Q ss_pred CcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhccccc
Q psy574 463 PSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542 (977)
Q Consensus 463 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~ 542 (977)
...+..+-+-.++..|.+.|.+.|..|.+.-+-.....+.
T Consensus 652 ~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~---------------------------------------- 691 (741)
T KOG3515|consen 652 HSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTA---------------------------------------- 691 (741)
T ss_pred ccccccccCCcchhhhcceeeecccCCCccccceecCCcC----------------------------------------
Confidence 1122235556778889999999999998765432221111
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecC
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLD 583 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~ 583 (977)
+..+.++.+..+...+|-|.|.+. .++-..+|.+.|...+
T Consensus 692 -~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~q~f~~~~~~~~ 732 (741)
T KOG3515|consen 692 -SVGPINLTYDNLTYSTISLEWMPGFDGGLQQRFFLKYYDLG 732 (741)
T ss_pred -CCCccceEeeeeeeeeeceeeeeccccccccceeeehhhcC
Confidence 222357888899999999999999 7788888999988776
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=121.23 Aligned_cols=91 Identities=25% Similarity=0.417 Sum_probs=79.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe---cCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
|.|...|.++.+.+|+.+.|.|.+ .|.|.+.+.|+|||+.|... .++.+. ..+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~--~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEG--EGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCC--CcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 578899999999999999999999 89999999999999999533 355544 246799999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCC
Q psy574 83 VAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P 100 (977)
..|... ..+.|.|..+|
T Consensus 78 ~~G~~~-~~~~l~V~~~P 94 (98)
T cd05762 78 KLGSRQ-AQVNLTVVDKP 94 (98)
T ss_pred CCCcee-EEEEEEEecCC
Confidence 999865 56899998776
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=119.64 Aligned_cols=91 Identities=30% Similarity=0.475 Sum_probs=81.2
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.|...|.+..+..|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.+. ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 6788889999999999999999999999999999999999864 345444 356899999999999999999999999
Q ss_pred eEEEEEEEEEeeCCe
Q psy574 176 KISASATLTVQMAPI 190 (977)
Q Consensus 176 ~~~~~~~L~V~~~p~ 190 (977)
...+.+.|.|...|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999997663
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=116.45 Aligned_cols=86 Identities=51% Similarity=1.047 Sum_probs=74.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
++|.++.+.+|++++|.|.+..|.|.+.|.|+|+|+.+... ..++.+..++.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 1 ~~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 46889999999999999998678999999999999998543 45677776889999999999999999999999998877
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05724 80 AAARLSV 86 (86)
T ss_pred eeEEEEC
Confidence 7777654
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-13 Score=116.40 Aligned_cols=86 Identities=27% Similarity=0.535 Sum_probs=73.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|+|.+.|.++.+.+|+.++|.|.+ .|.|.|.|.|+|++..+.. ..++.. .++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPA--TAEISM-SGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCC--CCEEec-CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 789999999999999999999999 8999999999999988743 234443 367899999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
... ..+.|.|
T Consensus 78 ~~~-~~~~l~V 87 (88)
T cd05851 78 KDK-HQARVYV 87 (88)
T ss_pred ceE-EEEEEEE
Confidence 754 4566666
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-13 Score=118.28 Aligned_cols=88 Identities=32% Similarity=0.590 Sum_probs=76.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-----CCCCCeEEEEEEEe
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQCVVKN 82 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-----~~~D~G~Y~C~a~n 82 (977)
|..+|.++.+.+|++++|.|.+ .+.|.+.|.|+|||+.+....+.+..+..+|+|.|.++ +.+|.|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 6789999999999999999999 88999999999999999655555566667888998887 58999999999999
Q ss_pred c-CceeeeEeEEEEE
Q psy574 83 V-AGTRESTDAVLRV 96 (977)
Q Consensus 83 ~-~g~~~s~~~~l~V 96 (977)
. .|...++.+.|+|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 9998888888765
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=116.17 Aligned_cols=88 Identities=39% Similarity=0.625 Sum_probs=74.7
Q ss_pred ccceecccceEEeCC---CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G---~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.+| ++++|.|.+ .|+|.+.|+|+|||..+......++.+. +++|.|.++. ..|+|.|+|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV-AGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE-CCeEEEccCCccCcCEEEEEEEE
Confidence 678899999988777 579999999 8999999999999999965555566665 6889998865 699999999999
Q ss_pred ecCceeeeEeEEEE
Q psy574 82 NVAGTRESTDAVLR 95 (977)
Q Consensus 82 n~~g~~~s~~~~l~ 95 (977)
|..|...+..+.|.
T Consensus 80 N~~G~~~s~~a~l~ 93 (94)
T cd05850 80 NRCGTVVSREANLR 93 (94)
T ss_pred cCcCcEEEEEEEEe
Confidence 99999888776664
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-13 Score=116.19 Aligned_cols=87 Identities=36% Similarity=0.646 Sum_probs=72.7
Q ss_pred ccceecccceEEe---CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVA---AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~---~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+. +|++++|.|.+ .|.|.|.|.|+|||..|....+.++.+. ++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLI-DGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEee-CCeEEEccCCccCcCEEEEEEEE
Confidence 6788999998765 47899999999 9999999999999999964444455544 6889999985 699999999999
Q ss_pred ecCceeeeEeEEE
Q psy574 82 NVAGTRESTDAVL 94 (977)
Q Consensus 82 n~~g~~~s~~~~l 94 (977)
|..|...+..+.|
T Consensus 80 N~~G~~~S~~~~l 92 (94)
T cd05848 80 NSIGSILSREALL 92 (94)
T ss_pred cCCCeEEeccEEE
Confidence 9999887776554
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=112.04 Aligned_cols=88 Identities=30% Similarity=0.548 Sum_probs=76.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
||.+...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 45667778899999999999999999999999999999877655433334678999999999999999999999999999
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..++|.|+
T Consensus 81 ~~~~l~V~ 88 (88)
T cd04968 81 HQGRIYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 99998874
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=113.32 Aligned_cols=86 Identities=22% Similarity=0.508 Sum_probs=73.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEEEe
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a~n 82 (977)
++.+.|.++.+.+|+++.|.|.+ .|.|. .+.|+| +|+.+.. ..|+.+..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 2 QVSISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred eEEEEecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence 46788999999999999999999 88998 899998 5777732 3577776555 799999999999999999999
Q ss_pred cCceeeeEeEEEEE
Q psy574 83 VAGTRESTDAVLRV 96 (977)
Q Consensus 83 ~~g~~~s~~~~l~V 96 (977)
..|......+.|.|
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99987777777765
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=114.49 Aligned_cols=88 Identities=22% Similarity=0.515 Sum_probs=69.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEe-CCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKK-NGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k-~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a 80 (977)
++.+.|.+..+.+|++++|.|.+ .|.|. |.|+|+| ||+.+.. ...|+.+..+ ++|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 2 QVDIVPSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTP-NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred cEEEeCCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccc-cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence 35678989999999999999999 88885 7999998 8877733 2346554432 57999999999999999999
Q ss_pred EecCceeeeEeEEEEE
Q psy574 81 KNVAGTRESTDAVLRV 96 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V 96 (977)
.|..|......+.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9997433445667665
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=112.74 Aligned_cols=87 Identities=33% Similarity=0.609 Sum_probs=72.9
Q ss_pred ccceecccceEEeCCC---cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGD---TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~---~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.++. .++|.|.+ .|.|.|.|.|+||+..+... ..++.+. ++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYSMV-GGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEEEE-CCEEEECcCCcCCCCEEEEEEEE
Confidence 6788899988776655 89999999 89999999999999988432 3466554 7899999985 699999999999
Q ss_pred ecCceeeeEeEEEE
Q psy574 82 NVAGTRESTDAVLR 95 (977)
Q Consensus 82 n~~g~~~s~~~~l~ 95 (977)
|..|...++.+.|.
T Consensus 79 N~~G~~~s~~a~l~ 92 (93)
T cd05849 79 NIYGKVRSREATLS 92 (93)
T ss_pred eCcceEEEccEEEe
Confidence 99999888777664
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=108.54 Aligned_cols=73 Identities=32% Similarity=0.681 Sum_probs=63.1
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|+|+++.+. ...|+.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|+|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKAN-STGVLSV 73 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCcee-EEEEEEC
Confidence 7899999999 899999999999999873 34688888889999999999999999999999999755 3455553
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=112.18 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=74.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.........++.|.|.++..+|+|.|+|.|.|..|...+++
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 56678899999999999999999999999999999999876433334678999999999999999999999999999998
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 8875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=110.55 Aligned_cols=85 Identities=32% Similarity=0.549 Sum_probs=72.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
+|...|.++.+.+|++++|.|.+ .|.|.|.+.|+|||..+.. ..++... ++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~--~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 1 EWLKVISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLAS--ENRIEVE-AGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred CccccCCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCC--CCeEEEe-CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 47788999999999999999999 8999999999999999843 3466654 779999999999999999999999997
Q ss_pred eeeEeEEEEE
Q psy574 87 RESTDAVLRV 96 (977)
Q Consensus 87 ~~s~~~~l~V 96 (977)
.. ..+.|.|
T Consensus 77 ~~-~~~~l~V 85 (85)
T cd05728 77 IY-ASAELAV 85 (85)
T ss_pred EE-EEEEEEC
Confidence 43 4455543
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=108.58 Aligned_cols=74 Identities=36% Similarity=0.686 Sum_probs=65.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
++|.|.+ .|.|.|.|.|+||+..+......|+....+|.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 5799999 8999999999999999865556788888888999999999999999999999999888888888773
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=106.58 Aligned_cols=72 Identities=25% Similarity=0.478 Sum_probs=65.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCC-CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.|.|.|+|++..+. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999999999999999998764 45677778889999999999999999999999999999998875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=107.45 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=65.5
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+|+++.|.|.+.|.|.|.|.|+|++..+... +..+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6899999999999999999999999988654 444556789999999999999999999999999999988875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=107.49 Aligned_cols=74 Identities=30% Similarity=0.627 Sum_probs=62.7
Q ss_pred CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 19 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+|+++.|.|.+ .|.|.|.|.|+|+|..+... .++.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQR-TVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCcee-EEEEEeC
Confidence 69999999999 89999999999999988533 355566678999999999999999999999999754 4456554
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=110.93 Aligned_cols=82 Identities=29% Similarity=0.609 Sum_probs=70.9
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+.+.|...|.++.+.+|+++.|.|.+ .++|.+.+.|+|+|..+... .|+.+.. .+.|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSS--QRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCC--CcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 56889999999999999999999999 89999999999999988433 3555443 358999999999999999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|..|...
T Consensus 79 ~N~~G~~~ 86 (92)
T cd05747 79 ENSEGKQE 86 (92)
T ss_pred EcCCCCEe
Confidence 99998743
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=109.33 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=69.6
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
.++.+.+.+|++++|.|.+ .|. .|.|.|+||+..+.. .|+.+.. ++.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred ccCccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 3456799999999999999 788 899999999998842 3455553 468999999999999999999999999888
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 8888887
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-12 Score=112.84 Aligned_cols=90 Identities=31% Similarity=0.581 Sum_probs=72.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC---CCceEEEecCcEEEEc-----CCCCCCCeEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQ-----DSRKTDDGRYQ 77 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~---~~~r~~~~~~g~L~I~-----~v~~~D~G~Y~ 77 (977)
|.|...|.++.+.+|++++|.|.+ .|.|.|.|.|+|||+.+... ...+..+..++.+.+. .++.+|+|.|+
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 678899999999999999999999 89999999999999998541 1223333445543322 34789999999
Q ss_pred EEEEecCceeeeEeEEEEE
Q psy574 78 CVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V 96 (977)
|.|.|..|...+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 9999999987888888876
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=110.65 Aligned_cols=85 Identities=27% Similarity=0.520 Sum_probs=67.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
.--|..+.+.+|+++.|.|.+ .|.|.|.|.|+|+|+.+......++....+ .+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence 345777899999999999999 899999999999999995444334433322 36999999999999999999999987
Q ss_pred eeeEeEEEE
Q psy574 87 RESTDAVLR 95 (977)
Q Consensus 87 ~~s~~~~l~ 95 (977)
.. ..+.|.
T Consensus 84 ~~-~~~~v~ 91 (92)
T cd05737 84 ET-VDVTVS 91 (92)
T ss_pred ce-EEEEEe
Confidence 44 334443
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=107.23 Aligned_cols=79 Identities=25% Similarity=0.459 Sum_probs=64.3
Q ss_pred CcEEEEEECCC-CCCCCeEEEEeCCEEeec-CCCceEEE----ecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEE
Q psy574 21 DTALLECGPPR-GHPEPTLVWKKNGHPIDF-ENSKRLRL----VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 21 ~~v~L~C~~~~-g~P~~~v~W~k~g~~l~~-~~~~r~~~----~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+++.|.|.+.. +.+.+.|.|+|||+.|.. ....++.. ..++.|+|.+++..|+|.|+|.|.|..+.. +..+.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 57899999832 356789999999999964 33446655 246789999999999999999999998874 567899
Q ss_pred EEEcCC
Q psy574 95 RVLVKP 100 (977)
Q Consensus 95 ~V~~~P 100 (977)
.|..||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999887
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=105.62 Aligned_cols=71 Identities=31% Similarity=0.563 Sum_probs=58.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--Cc--EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g--~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|.|+|.+ .|.|.|.|.|+|||+.|..+ ..|+.+.. +| +|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT-CHARLDV 75 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE-EEEEEeC
Confidence 5799999 99999999999999999533 34777643 33 799999999999999999999999865 4466654
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-12 Score=109.43 Aligned_cols=87 Identities=32% Similarity=0.550 Sum_probs=75.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEec---cceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+|.++..|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+.. .++|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 368888999999999999999999999999999999999988764 3555442 358999999999999999999999
Q ss_pred CeeEEEEEEEE
Q psy574 174 VGKISASATLT 184 (977)
Q Consensus 174 ~g~~~~~~~L~ 184 (977)
.|..+..+.|+
T Consensus 82 ~G~~~~~~~l~ 92 (92)
T cd05747 82 EGKQEAQFTLT 92 (92)
T ss_pred CCCEeEEEEeC
Confidence 99988877763
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-12 Score=107.25 Aligned_cols=80 Identities=24% Similarity=0.468 Sum_probs=66.3
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
.+.+.+|+++.|.|.+ .|.|.|.+.|+|+++.+... ..|+.+.. .+.|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~ 80 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HA 80 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EE
Confidence 5789999999999999 89999999999999999532 34666553 3579999999999999999999999974 34
Q ss_pred eEEEEE
Q psy574 91 DAVLRV 96 (977)
Q Consensus 91 ~~~l~V 96 (977)
.+.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05894 81 SLFVKV 86 (86)
T ss_pred EEEEEC
Confidence 455543
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.6e-12 Score=105.07 Aligned_cols=75 Identities=29% Similarity=0.601 Sum_probs=61.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|+|||+.+......+....+++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLL-ANAFVNV 75 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEE-EEEEEEe
Confidence 7899999999 8999999999999999854332233334456899999999999999999999999855 4566665
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=110.74 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=65.8
Q ss_pred ceEEeCCCcEEEEEECCCC-CCCCeEEEEeCCEEeecCCCceEEEec-------CcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 14 SQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g-~P~~~v~W~k~g~~l~~~~~~r~~~~~-------~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
.+.+.+|+++.|.|.+ .| .|.|.|.|+|||+.|... ...+.... .+.|.|..++++|+|.|+|+|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 5889999999999999 78 899999999999999532 22222222 36799999999999999999999999
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
.. +..+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 74 456777765
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-12 Score=104.86 Aligned_cols=74 Identities=32% Similarity=0.623 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCC-CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFEN-SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|+|+|||+.+.... ..++.+ .++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHV-SSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV 75 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEe-eCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence 7899999999 899999999999999985433 235544 478899999999999999999999999854 4566665
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-12 Score=105.04 Aligned_cols=71 Identities=35% Similarity=0.581 Sum_probs=59.1
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc----EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g----~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+|+|.+ .|.|.|.|.|+|++..+.. ...|+.+..++ .|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTH-NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVS-CTARLDV 75 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCC-CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE-EEEEEeC
Confidence 5799999 9999999999999999943 34577775443 699999999999999999999999865 4566654
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-12 Score=104.12 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=59.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEecc--c--eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPS--R--SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~--~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. +++.+..+ + +|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998863 45555432 2 7999999999999999999999999999999876
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=107.91 Aligned_cols=86 Identities=26% Similarity=0.506 Sum_probs=71.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+.+...|.++.+.+|++++|.|.+ .|.|.|.+.|+|++..+.... +.. ..++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~--~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSA--EIS-MSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCcc--EEE-EeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 356678889999999999999999 899999999999888764332 233 3578999999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
.. ...+.|.|
T Consensus 78 ~~-~~~~~l~V 87 (88)
T cd04968 78 KD-THQGRIYV 87 (88)
T ss_pred cE-EEEEEEEE
Confidence 74 45567766
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=105.44 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=68.1
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. .++.+. ..+.|.|.++..+|+|.|+|.|.|..|..++.+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 45788999999999999999999999999998864 355544 2367999999999999999999999999988888
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 875
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=103.53 Aligned_cols=72 Identities=28% Similarity=0.468 Sum_probs=63.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.|.++|+|++..+... ......++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999987542 122336688999999999999999999999999999999887
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=107.80 Aligned_cols=89 Identities=31% Similarity=0.629 Sum_probs=74.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|+|...|.++.+.+|++++|.|.+ .+.|.+.+.|+++|..+..+...++.... ...|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 678899999999999999999999 78899999999999999765544444443 3579999999999999999999997
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
|... ..+.|.|
T Consensus 80 g~~~-~~~~l~V 90 (90)
T PF07679_consen 80 GEAT-ASVNLTV 90 (90)
T ss_dssp EEEE-EEEEEEE
T ss_pred CEEE-EEEEEEC
Confidence 7643 4456654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=105.62 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=66.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
|..+|.++.+.+|+++.|.|.+ .|.|.| .|.|+|||..+.. +... ..+.|.|.++ .|.|.|+|+|.|..|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~----~~~~-~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGD----PPAP-SPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCC----CCCC-CCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 6778999999999999999999 999999 7999999999843 1112 2567999887 4789999999999998
Q ss_pred eeeEeEEE
Q psy574 87 RESTDAVL 94 (977)
Q Consensus 87 ~~s~~~~l 94 (977)
..+..+.|
T Consensus 73 ~~s~~a~~ 80 (81)
T cd05749 73 TTSRTGTV 80 (81)
T ss_pred EEeeeEEe
Confidence 87776665
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=103.54 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=63.4
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|+++.|.|.+.|+|.|.|.|+|++.++... ......++.|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 688999999999999999999999988532 2233355689999999999999999999999999999999874
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-12 Score=103.68 Aligned_cols=69 Identities=32% Similarity=0.550 Sum_probs=60.0
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEeccc----eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSR----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..+. .|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999998864 355554332 6999999999999999999999999999999876
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=108.98 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=68.8
Q ss_pred CceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCCCCce-EEe-c-------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 107 KDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRM-SVL-P-------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~-~~~-~-------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+.+.+|+++.|.|.+.| .|.|.+.|+|||.++..... .+. . ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4568899999999999999 89999999999999975332 222 2 367999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-12 Score=108.40 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=65.5
Q ss_pred ccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec-CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 6 ~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~-~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+.|..++.+ +.+.+|+.+.|.|..+.+.|.+.|.|+||+..+.. ++..++....+|+|.|.+++++|+|.|+|.|+|.
T Consensus 3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cccCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 456665544 67999999999999999999999999999886533 2333454445899999999999999999999997
Q ss_pred Cce
Q psy574 84 AGT 86 (977)
Q Consensus 84 ~g~ 86 (977)
...
T Consensus 83 ~~~ 85 (96)
T cd05727 83 SST 85 (96)
T ss_pred ccC
Confidence 643
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=107.18 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=68.5
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCc-eEEEEEE-CCeeCCC-C-ceEEec----cceEEEccCccCCCeEEEEEEEeCC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKR-LGSAMPE-D-RMSVLP----SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k-~~~~l~~-~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
...|.+..+.+|+++.|.|.+.|.|. |.+.|++ ++..+.. + ++.+.. .++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 45577778999999999999999985 7999998 6665543 2 444432 2589999999999999999999997
Q ss_pred -eeEEEEEEEEEe
Q psy574 175 -GKISASATLTVQ 186 (977)
Q Consensus 175 -g~~~~~~~L~V~ 186 (977)
|..++++.|.|.
T Consensus 84 ~g~~~~s~~l~v~ 96 (96)
T cd05865 84 EGESEATVNVKIF 96 (96)
T ss_pred CCcEEEEEEEEEC
Confidence 888899988873
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=102.32 Aligned_cols=69 Identities=49% Similarity=0.889 Sum_probs=63.7
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++|.|.+.|.|.|.+.|+|++..++..++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999999988888888878889999999999999999999999999988888875
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=106.80 Aligned_cols=86 Identities=38% Similarity=0.653 Sum_probs=76.5
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. .++.+. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 6788889999999999999999999999999999999998865 344443 456899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
..+..+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999998876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=101.29 Aligned_cols=70 Identities=36% Similarity=0.621 Sum_probs=62.3
Q ss_pred eEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 116 ~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++.|.|.+.|.|.|.++|+|++..+.. .++.+..++.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999988754 4566667788999999999999999999999999999998875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=106.79 Aligned_cols=84 Identities=29% Similarity=0.658 Sum_probs=69.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-cEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
+.++.+..|++++|.|.+ .|.|.+.|.|+|+|..+... ..++.+..+ +.|.|.+++.+|+|.|+|.|.|..|.. ..
T Consensus 10 ~~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (95)
T cd05730 10 EVNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EA 86 (95)
T ss_pred ccceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EE
Confidence 345689999999999999 89999999999999998543 346665544 469999999999999999999999975 45
Q ss_pred eEEEEEEc
Q psy574 91 DAVLRVLV 98 (977)
Q Consensus 91 ~~~l~V~~ 98 (977)
.+.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 67777764
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=105.70 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=65.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec----C---cEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD----G---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~----~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
|+.++|.|.+ .|.|.+.+.|+|+++.+... ..|+.+.. + ++|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~ 77 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GII 77 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEE
Confidence 8999999999 88999999999999988543 34655432 1 4699999999999999999999999854 668
Q ss_pred EEEEEcCCe
Q psy574 93 VLRVLVKPY 101 (977)
Q Consensus 93 ~l~V~~~P~ 101 (977)
.|.|..+|.
T Consensus 78 ~L~V~~~P~ 86 (88)
T cd05735 78 QLTVQEPPD 86 (88)
T ss_pred EEEEeCCCC
Confidence 899987763
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=105.91 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=70.6
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE----eccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV----LPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+... .....|.|.++..+|.|.|+|.|.|..|...
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 456677789999999999999999999999999999876543211 1345899999999999999999999999999
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
+.+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 9888875
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=106.69 Aligned_cols=87 Identities=30% Similarity=0.528 Sum_probs=71.4
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEec---cceEEEccCccCCCeEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVLP---SRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~~---~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+|.+...+....+..|+.+.|.|.+.|.|.|.++|++++..+.. +++.+.. .+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 46777777666666789999999999999999999999877643 2233322 25799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
|.|..|..++.+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999988875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=98.91 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=57.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|||..+... ...+.|.|.++..+|+|.|+|.|+|..|..++.+.|++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 145689999999999999999999999987777776653
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=103.73 Aligned_cols=78 Identities=26% Similarity=0.509 Sum_probs=62.1
Q ss_pred CcEEEEEECCCCCCCC--eEEEEeCCEEeecCC-CceEE---Ee-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 21 DTALLECGPPRGHPEP--TLVWKKNGHPIDFEN-SKRLR---LV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~-~~r~~---~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
++++|.|.+ .|.|.| .|.|+|||+.|.... ..++. .. ..++|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASAT 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEE
Confidence 579999999 888877 689999999985432 33332 22 35789999999999999999999999875 46789
Q ss_pred EEEEcCC
Q psy574 94 LRVLVKP 100 (977)
Q Consensus 94 l~V~~~P 100 (977)
|.|..+|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998776
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=104.66 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=69.4
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASAT 182 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~ 182 (977)
.+.++.+.+|++++|.|.+.|. .|.|.|+|++..+...+..+. .+++|.|.+++.+|+|.|+|.|.|..|. .+..+.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 3557789999999999999999 999999999999887776654 4468999999999999999999999997 455777
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=103.30 Aligned_cols=75 Identities=31% Similarity=0.554 Sum_probs=63.9
Q ss_pred CeEEEEEEeccc--CceEEEEEECCeeCCC----CceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGD--AVLTVHWKRLGSAMPE----DRMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~--p~~~i~W~k~~~~l~~----~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+++.|.|.+.++ +.+.|.|+|||..|.. .++... .++.|.|.+++..|+|.|+|.|.|..+..++.+.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999764 5789999999999962 244442 456899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99887
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=101.67 Aligned_cols=73 Identities=30% Similarity=0.662 Sum_probs=62.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+.+.|.|.+ .|.|.+.+.|+|++..+.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLTN--SSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKAN-STGSLSV 73 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEccc--CCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceE-EEEEEEC
Confidence 7899999998 8999999999999998843 4577777788999999999999999999999998754 4455543
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=105.64 Aligned_cols=81 Identities=27% Similarity=0.388 Sum_probs=69.0
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe-c---cceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL-P---SRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~-~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
.|....+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .++.+. . ..+|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 46677899999999999999999999999999998864 344443 1 247999999999999999999999999888
Q ss_pred EEEEEE
Q psy574 180 SATLTV 185 (977)
Q Consensus 180 ~~~L~V 185 (977)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 887765
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=105.83 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=66.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
...|.++.+.+|+.+.|.|.+ .|.|.|.|.|+|||..+.......... ...+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 446777889999999999999 899999999999999884322211111 223579999999999999999999999974
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
. ..+.|.|
T Consensus 83 ~-~~~~L~v 90 (90)
T cd04972 83 N-VSVQVTV 90 (90)
T ss_pred e-EEEEEeC
Confidence 4 4455543
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-11 Score=104.79 Aligned_cols=77 Identities=26% Similarity=0.406 Sum_probs=66.5
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCC--CceEEec----c---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP----S---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~----~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+.++|.|.+.|.|.+.+.|+|++..+.. .++.+.. + .+|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 78999999999999999999999988854 3454431 1 5799999999999999999999999999999999
Q ss_pred EeeCCe
Q psy574 185 VQMAPI 190 (977)
Q Consensus 185 V~~~p~ 190 (977)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 997653
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=105.51 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=69.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
.+..+..|+++.|.|.+.|.|.+.+.|+|++..+... ++... ....|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 4557899999999999999999999999999988653 33333 33579999999999999999999999999999999
Q ss_pred EEee
Q psy574 184 TVQM 187 (977)
Q Consensus 184 ~V~~ 187 (977)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8863
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-11 Score=106.87 Aligned_cols=86 Identities=31% Similarity=0.622 Sum_probs=69.9
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeCC------CCceEEec---cceEEEccCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAMP------EDRMSVLP---SRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l~------~~~~~~~~---~~~L~I~~v~~~D~G~Y~ 167 (977)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|+|+ +..+. ..++.+.. ..+|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 466654 6788999999999999999999999999995 33332 23454432 358999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy574 168 CEAENAVGKISASATLTV 185 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V 185 (977)
|.|.|..|...+++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888888875
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=100.51 Aligned_cols=71 Identities=34% Similarity=0.631 Sum_probs=59.5
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+++|.|.+ .|.|.|.|+|+|+|..+.. ..++.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 71 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQ-ASAQLII 71 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence 58999999 8999999999999998843 3466776778899999999999999999999999855 4455543
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=101.36 Aligned_cols=75 Identities=36% Similarity=0.659 Sum_probs=61.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|++||..+............++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV 75 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence 7899999999 8999999999999999854433323444578999999999999999999999998754 5566665
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-11 Score=103.67 Aligned_cols=85 Identities=27% Similarity=0.472 Sum_probs=68.2
Q ss_pred CCeEEeCCCceEEeCCC---eEEEEEEecccCceEEEEEECCeeCCC--CceEEeccceEEEccCc-cCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASS---IIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVR-LEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~---~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n 172 (977)
.|.|...|.++.+.++. .+.|.|.+.|.|.|.|+|+|++..+.. .++ ...++.|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~-~~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY-SMVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE-EEECCEEEECcCCcCCCCEEEEEEEEe
Confidence 37788888887665544 899999999999999999999988753 343 3457899999985 6899999999999
Q ss_pred CCeeE-EEEEEEE
Q psy574 173 AVGKI-SASATLT 184 (977)
Q Consensus 173 ~~g~~-~~~~~L~ 184 (977)
..|.. +..+.|.
T Consensus 80 ~~G~~~s~~a~l~ 92 (93)
T cd05849 80 IYGKVRSREATLS 92 (93)
T ss_pred CcceEEEccEEEe
Confidence 99985 4455553
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=106.75 Aligned_cols=87 Identities=33% Similarity=0.564 Sum_probs=69.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEeccceEEEc-----cCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVLPSRSLQLS-----DVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~~~~~L~I~-----~v~~~D~G~Y~ 167 (977)
+|.+...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .+.....++.+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 57888999999999999999999999999999999999988764 12222344443322 23689999999
Q ss_pred EEEEeCCee-EEEEEEEEE
Q psy574 168 CEAENAVGK-ISASATLTV 185 (977)
Q Consensus 168 C~a~n~~g~-~~~~~~L~V 185 (977)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 777888876
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=105.31 Aligned_cols=86 Identities=22% Similarity=0.568 Sum_probs=66.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.+.+.|..+.+..|+++.|.|.+ .|.|. .+.|++ +++.+... .++.+..+ ++|+|.+++.+|+|.|+|.|.
T Consensus 2 ~v~v~p~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 2 QVDIVPSQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred eEEEecCcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence 45788999999999999999999 77774 999998 67766432 23333322 379999999999999999999
Q ss_pred ecCceeeeEeEEEEE
Q psy574 82 NVAGTRESTDAVLRV 96 (977)
Q Consensus 82 n~~g~~~s~~~~l~V 96 (977)
|..|.....++.|.|
T Consensus 78 N~~g~~~~~sv~l~~ 92 (92)
T cd04977 78 DAKGTESEATVNLKI 92 (92)
T ss_pred cCCCCcceeEEEEEC
Confidence 987765556666553
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=103.81 Aligned_cols=78 Identities=28% Similarity=0.529 Sum_probs=62.1
Q ss_pred CcEEEEEECCCCCCCC--eEEEEeCCEEeecCCC-ceE----EEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 21 DTALLECGPPRGHPEP--TLVWKKNGHPIDFENS-KRL----RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~-~r~----~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
++++|.|.+ .+.|.+ .+.|+|||+.|..+.. .++ ....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 78 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASAD 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEE
Confidence 579999999 788877 6799999999854322 222 22246789999999999999999999998874 56789
Q ss_pred EEEEcCC
Q psy574 94 LRVLVKP 100 (977)
Q Consensus 94 l~V~~~P 100 (977)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998876
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=100.31 Aligned_cols=72 Identities=28% Similarity=0.561 Sum_probs=64.7
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+..+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78899999999999999999999988754 4666667789999999999999999999999999999888875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=100.95 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=64.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCc---eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|+++.|.|.+.|.|.|.|.|++++..+.... .....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 7899999999999999999999999886432 233467899999999999999999999999999999998873
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=106.25 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=65.5
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--------cCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
...+..|+.+.|.|.+ .|.|.|.|.|+|||++|.... ..+... ..++|.|.+++.+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 5789999999999999 999999999999999995322 222211 125799999999999999999999998
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
... .++.|.|+
T Consensus 90 ~~~-~t~~l~V~ 100 (101)
T cd05859 90 VKS-YTFALQIQ 100 (101)
T ss_pred eEE-EEEEEEEE
Confidence 754 55677764
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=103.16 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CeEEeCCCceEEeCC---CeEEEEEEecccCceEEEEEECCeeCCCC--ceEEeccceEEEccCc-cCCCeEEEEEEEeC
Q psy574 100 PYIIRGPKDTTVSAS---SIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDAGEYVCEAENA 173 (977)
Q Consensus 100 P~~~~~p~~~~v~~G---~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~ 173 (977)
|.|...|.++.+.+| +++.|.|.+.|+|.+.|+|++++..+... ......++.|.|.++. ..|+|.|+|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 678888888877666 58999999999999999999999988632 2222356789998865 69999999999999
Q ss_pred CeeEE-EEEEEE
Q psy574 174 VGKIS-ASATLT 184 (977)
Q Consensus 174 ~g~~~-~~~~L~ 184 (977)
.|.+. ..+.|.
T Consensus 82 ~G~~~s~~a~l~ 93 (94)
T cd05850 82 CGTVVSREANLR 93 (94)
T ss_pred cCcEEEEEEEEe
Confidence 99854 455553
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=106.10 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=68.2
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe----------ccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
...+..|+.+.|.|.+.|.|.|.+.|+|++.++..+...+. ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 55788999999999999999999999999999875432221 13579999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 889888875
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=104.21 Aligned_cols=77 Identities=30% Similarity=0.578 Sum_probs=63.2
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
.|..+.+.+|+++.|.|.+ .+.|.+.+.|+|+|..+.......+.+..+ ++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 5778999999999999998 789999999999999885443223333332 3799999999999999999999988743
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=104.20 Aligned_cols=78 Identities=32% Similarity=0.571 Sum_probs=65.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEee------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
|++++|.|.+ .|.|.|.|.|+|+|..+. .....|+.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIL-TKAY 78 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceE-EEEE
Confidence 7899999999 899999999999986531 1235688887788999999999999999999999999754 5688
Q ss_pred EEEEcC
Q psy574 94 LRVLVK 99 (977)
Q Consensus 94 l~V~~~ 99 (977)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 888753
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-11 Score=102.14 Aligned_cols=75 Identities=28% Similarity=0.472 Sum_probs=63.3
Q ss_pred CeEEEEEEecccCce--EEEEEECCeeCCCC----ceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~----~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+.++|.|.+.|+|.| .+.|+|++..+... ++... ..++|.|.+++..|+|.|+|.|.|..|..++.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999887 68999999887532 22211 347899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-11 Score=97.33 Aligned_cols=69 Identities=22% Similarity=0.467 Sum_probs=57.9
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.|.|+|++..+............|.|.++. |+|.|+|.|.|..|..++.+.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 6889999999999999999999998886544333345679999974 89999999999999988887763
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=98.80 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=60.9
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|++..+...........+|.|.+++.+|+|.|+|.|.|..|..++.+.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4699999999999999999999987665455567899999999999999999999999988777777653
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=104.17 Aligned_cols=75 Identities=28% Similarity=0.565 Sum_probs=65.5
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeC---------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|+|++..+ ...++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999997643 23456666678999999999999999999999999999999999
Q ss_pred EeeC
Q psy574 185 VQMA 188 (977)
Q Consensus 185 V~~~ 188 (977)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9853
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-11 Score=100.85 Aligned_cols=71 Identities=28% Similarity=0.553 Sum_probs=59.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|.+..+.+|+.++|.|.+ .+. .+.|.|+|||..|.. +.|+.+. ++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~--~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGE--NNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCC--CceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 677899999999999999 554 468999999999843 3466665 5689999999999999999999987763
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=109.95 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=89.3
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeee
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRS 229 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~ 229 (977)
+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.......|+.++|.|.+.|. |. ..|.|+++|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 6899999999999999999998888889999999999999888877666689999999999986 44 389999998542
Q ss_pred eec--CCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 230 LIY--PGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 230 ~~~--~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
... .......-......+|. +.|.+..-..++...|+ |.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~yt-C~V~H~~l 132 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYT-CRVSHVSL 132 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEE-EEEEcCCC
Confidence 110 00000000111222232 36777666666678999 99987643
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=103.08 Aligned_cols=84 Identities=27% Similarity=0.567 Sum_probs=67.1
Q ss_pred CeEEeCCCceEEe---CCCeEEEEEEecccCceEEEEEECCeeCCCC-ceE-EeccceEEEccCc-cCCCeEEEEEEEeC
Q psy574 100 PYIIRGPKDTTVS---ASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMS-VLPSRSLQLSDVR-LEDAGEYVCEAENA 173 (977)
Q Consensus 100 P~~~~~p~~~~v~---~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~-~~~~~~L~I~~v~-~~D~G~Y~C~a~n~ 173 (977)
|.|+..|.++.+. +|+++.|.|.+.|.|.|.|+|+|++..+... ... ...++.|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 6788888887664 4789999999999999999999999988642 222 2356889999985 69999999999999
Q ss_pred CeeEE-EEEEE
Q psy574 174 VGKIS-ASATL 183 (977)
Q Consensus 174 ~g~~~-~~~~L 183 (977)
.|... ..+.|
T Consensus 82 ~G~~~S~~~~l 92 (94)
T cd05848 82 IGSILSREALL 92 (94)
T ss_pred CCeEEeccEEE
Confidence 99853 44443
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=100.60 Aligned_cols=78 Identities=19% Similarity=0.469 Sum_probs=65.5
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|++..+.+|+.+.|.|.+.+. .+.+.|+|+|.++..+ ++.+ .+..|.|.+++.+|+|.|+|.|.|..|.....+.|+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 566788999999999999886 5689999999988754 4444 467899999999999999999999988877777665
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 79 V 79 (79)
T cd04973 79 V 79 (79)
T ss_pred C
Confidence 4
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-11 Score=98.67 Aligned_cols=69 Identities=38% Similarity=0.644 Sum_probs=60.4
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++..+...+... ..+++|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998876554433 35679999999999999999999999999999888887
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=98.77 Aligned_cols=69 Identities=30% Similarity=0.490 Sum_probs=59.2
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEecc----ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999998863 35554322 26999999999999999999999999999998875
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=103.63 Aligned_cols=84 Identities=33% Similarity=0.563 Sum_probs=70.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccC-----ccCCCeEEEEEEEeC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDV-----RLEDAGEYVCEAENA 173 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v-----~~~D~G~Y~C~a~n~ 173 (977)
|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... +..+..+++|.|.++ ..+|+|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 566788889999999999999999999999999999988643 245556778888877 588999999999999
Q ss_pred -CeeE-EEEEEEEE
Q psy574 174 -VGKI-SASATLTV 185 (977)
Q Consensus 174 -~g~~-~~~~~L~V 185 (977)
.|.. +..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 8875 66777765
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-11 Score=103.09 Aligned_cols=84 Identities=39% Similarity=0.663 Sum_probs=69.0
Q ss_pred ccceecccceEEeCC---CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G---~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.+| ++++|.|.+ .|.|.+.|.|+|+++.+......++.+. ++.|.|.++. .+|+|.|+|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEE-CCEEEEecCCccCCCEEEEEEEE
Confidence 678889998876655 579999999 8899999999999999854444556554 6789999887 499999999999
Q ss_pred ecCceeeeEe
Q psy574 82 NVAGTRESTD 91 (977)
Q Consensus 82 n~~g~~~s~~ 91 (977)
|..|...++.
T Consensus 80 N~~G~~~S~~ 89 (91)
T cd04967 80 NIVGTVLSRE 89 (91)
T ss_pred cCCCEEEecc
Confidence 9999876654
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=101.32 Aligned_cols=81 Identities=36% Similarity=0.637 Sum_probs=68.7
Q ss_pred CCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC--CceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEE
Q psy574 105 GPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SAS 180 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~ 180 (977)
.|.+..+.+|+++.|.|.+ .|.|.+.+.|+|++..+.. .++.+..++.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678889999999999998 7899999999999988764 35555567899999999999999999999999874 556
Q ss_pred EEEEE
Q psy574 181 ATLTV 185 (977)
Q Consensus 181 ~~L~V 185 (977)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 66654
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=101.40 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=67.0
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEeccc---eEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
...|.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+. ..++.+..++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 44567788999999999999999998 8999985 55544 3466665444 89999999999999999999999874
Q ss_pred -EEEEEEEE
Q psy574 178 -SASATLTV 185 (977)
Q Consensus 178 -~~~~~L~V 185 (977)
.+.+.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 66777765
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-11 Score=98.87 Aligned_cols=71 Identities=31% Similarity=0.619 Sum_probs=58.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|.|+|+|||+.+....+.++.+. .+++|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4799999 8999999999999998765556677664 578999998742 469999999999999888876654
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.8e-11 Score=99.26 Aligned_cols=73 Identities=26% Similarity=0.551 Sum_probs=58.3
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceee-eEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~~~l~V~ 97 (977)
|+|.|.+ .|.|.|.|.|+|||..+... ..++.+.. ++.|.|.+++++|+|.|+|.|.|..|... +..+.|.|.
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDG-QGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCC-CccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5899999 89999999999999998443 33555443 46899999999999999999999999754 345566554
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-11 Score=103.93 Aligned_cols=86 Identities=35% Similarity=0.553 Sum_probs=70.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEe---ccceEEEccCccCCCeEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVL---PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~---~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+|.+. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. +++.+. ....|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45654 45678899999999999999999999999999866543 233332 235899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
|.|..|..+.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999988888865
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-11 Score=103.78 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=66.9
Q ss_pred ccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 6 EEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 6 ~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
+.|..+ .+.+.|.+|+.+.|.|.++.|.|.|.|.|++++... ...+.|+.+..+|+|.|.+++.+|+| .|.|.|.|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 455555 467999999999999998899999999999887654 34578999988999999999999999 899999987
Q ss_pred C
Q psy574 84 A 84 (977)
Q Consensus 84 ~ 84 (977)
.
T Consensus 82 ~ 82 (95)
T cd05845 82 G 82 (95)
T ss_pred c
Confidence 4
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=98.98 Aligned_cols=70 Identities=30% Similarity=0.594 Sum_probs=59.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+|.+..+..|+++.|.|.+ . .|.+.|.|+|||+.|..+ ..|+.+. ++.|.|.+++.+|+|.|+|.+.+.
T Consensus 1 ~~P~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~-~~r~~~~-~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 1 LDPRQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPE-SAKYLLY-RDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CCcceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCC-CceEEEE-CCcEEEeCCCHHHCEEEEEEEEec
Confidence 36889999999999999998 3 367899999999999644 3466665 677999999999999999999876
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=98.49 Aligned_cols=71 Identities=25% Similarity=0.632 Sum_probs=58.1
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|+|+|+|||..+......++.+. .+|+|.|..+.. .|+|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 5799999 9999999999999999855555566554 368899988875 378999999999999887776554
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=102.54 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|+++. ..+.........++.+... .+...|.|.+++.+|+|.|
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~-~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ-HGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec-CCeeEEEEeeCCcCCCEEE
Confidence 45554 467889999999999999999999999999953 3322111122456766542 2345899999999999999
Q ss_pred EEEEEEcCCCceeEEEEEEE
Q psy574 266 ILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 266 ~~C~a~n~~g~~~~~~~l~V 285 (977)
+ |.|.|..|....++.|.|
T Consensus 80 ~-C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 D-CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred E-EEEeccCCcceeEEEEeC
Confidence 9 999999999988888764
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=102.40 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.|+|...+....+..|+.++|.|.+.|.|.|.+.|++++..+........+++.+... ...+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-~~~~~L~I~~v~~~D~G~Y~- 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-ARVSSLTLKYIQYTDAGEYL- 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC-ccEEEEEEecCccCcCEEEE-
Confidence 4677777777677778999999999999999999999887653211112344444432 23358999999999999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy574 268 CLGVNAAGSDLARASLTV 285 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V 285 (977)
|.|.|..|....++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999888865
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=100.41 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=65.8
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----EE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.+.+|+.+.|.|.+.|.|.+.+.|+|++..+..... .. .....|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 4578899999999999999999999999998864321 22 134679999999999999999999999999999888
Q ss_pred EE
Q psy574 184 TV 185 (977)
Q Consensus 184 ~V 185 (977)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-11 Score=95.59 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=53.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.|.|.+ .|.|.|.+.|+|||+.|... ...+.|.|.++..+|+|.|+|+|.|..|... ..+.++|
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l 65 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLE-KRISLEL 65 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence 4799999 99999999999999999421 1256899999999999999999999988633 4445544
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-11 Score=99.32 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=59.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
++|.|.+ .|.|.|+|+|+|||..+....+.++.+. .+|.|.|.++.. +|+|.|+|+|.|..|...+..+.|
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 5799999 8999999999999999865555566654 468999999864 799999999999999877766554
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-11 Score=97.61 Aligned_cols=63 Identities=35% Similarity=0.759 Sum_probs=55.6
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.|.+ .|.|.|.|.|+|+|..+. ...++.+..++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 63 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYAS 63 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEE
Confidence 5799999 899999999999999884 34577777788999999999999999999999999744
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=103.88 Aligned_cols=93 Identities=26% Similarity=0.462 Sum_probs=72.2
Q ss_pred cccceecccceEE----eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--c-----CcEEEEcCCC-CCC
Q psy574 5 REEFRVQPKSQRV----AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--D-----GTNLAIQDSR-KTD 72 (977)
Q Consensus 5 ~~~~~~~p~~~~v----~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~-----~g~L~I~~v~-~~D 72 (977)
.|.|...|....+ ..|.+++|.|.+ .|.|.+.+.|+|||..|... +.|+.+. . .+.|.|.+++ .+|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCC
Confidence 5777777764333 245799999999 89999999999999998533 3355422 1 3579999997 699
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCC
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P 100 (977)
.|.|+|.|.|..|.. ...+.|.|..+|
T Consensus 82 ~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 999999999999985 566888888776
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=97.62 Aligned_cols=68 Identities=32% Similarity=0.626 Sum_probs=60.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..++.|.|.++..+|+|.|+|.|.|..|..+.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 47999999999999999999988754 466666788999999999999999999999999988887763
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-11 Score=96.21 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=56.7
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++.++... ..+..+..|.|.++..+|+|.|+|.|.|..|..+....+++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999998754 33445668999999999999999999999997665555444
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=97.65 Aligned_cols=61 Identities=28% Similarity=0.484 Sum_probs=51.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+.|.|.+ .|+|.|.+.|+|||+.|... .+ +..++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~ 61 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEE 61 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCcee
Confidence 4689999 99999999999999999432 23 33456899999999999999999999998654
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=108.69 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=84.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCee
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSA 139 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~ 139 (977)
+|+|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+......+|+.+.|.|.+.|. |. +.|.|+|++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6999999999999999999987776 456789999999998888776666689999999999875 54 58999999864
Q ss_pred CCC-----Cc-----eEEecc------ceEEEccCccCCCeEEEEEEEeCC
Q psy574 140 MPE-----DR-----MSVLPS------RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 140 l~~-----~~-----~~~~~~------~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
... .. .....+ ..|.|..-..++...|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 211 11 111233 345665555556779999998753
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-11 Score=101.31 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=63.0
Q ss_pred CeEEEEEEecccCce--EEEEEECCeeCCCCc----eE----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGDAVL--TVHWKRLGSAMPEDR----MS----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~----~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+++.|.|.+.|.|.+ .+.|+|++..+.... +. ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999877 679999998875321 11 12457899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=104.44 Aligned_cols=92 Identities=23% Similarity=0.367 Sum_probs=72.8
Q ss_pred cCCeEEeCCCceEE----eCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe-------ccceEEEccCc-cCCC
Q psy574 98 VKPYIIRGPKDTTV----SASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL-------PSRSLQLSDVR-LEDA 163 (977)
Q Consensus 98 ~~P~~~~~p~~~~v----~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~-------~~~~L~I~~v~-~~D~ 163 (977)
-+|.+...|....+ ..|.++.|.|.+.|.|.+.+.|+|++..+.. .++... ..+.|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 46666666653322 2468999999999999999999999998863 233321 13579999997 6999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
|.|+|.|.|..|..+..+.|.|..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999998766
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=100.85 Aligned_cols=83 Identities=31% Similarity=0.508 Sum_probs=73.9
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.++|.|+|++| ...++.+.+|.|+|+..+ ........+..+.+.++|.+|+|++.|.|+|+|.+..
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPP--SSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEES--SSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEECCCCEEEEEEECC--CCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 6799999999999999999999 477899999999999876 3336667777788899999999999999999999999
Q ss_pred CcCCCC
Q psy574 723 GTGPYS 728 (977)
Q Consensus 723 G~g~~S 728 (977)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 998875
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9e-11 Score=98.50 Aligned_cols=77 Identities=22% Similarity=0.443 Sum_probs=62.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|++.+.|....+.+|++++|.|.+ .+.|. ..+.|+|||+.+.. .++.|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~- 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS- 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC-
Confidence 467888999999999999999999 66665 47999999998821 2568999999 99999999999864
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
..|..+.|+|
T Consensus 69 --~~S~~v~l~V 78 (78)
T cd05752 69 --SLSDPVHLEV 78 (78)
T ss_pred --cCCCCEEEeC
Confidence 3455566654
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=98.78 Aligned_cols=81 Identities=30% Similarity=0.522 Sum_probs=64.0
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEe
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 91 (977)
.+.+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..... .++.+. ..+.|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 3 ~~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~-~~ 80 (85)
T cd05857 3 LHAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HT 80 (85)
T ss_pred cEEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE-EE
Confidence 3568899999999999 8899999999999999854322 122332 345799999999999999999999999754 44
Q ss_pred EEEEE
Q psy574 92 AVLRV 96 (977)
Q Consensus 92 ~~l~V 96 (977)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 56654
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=98.28 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=63.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE-E
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS-A 179 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~ 179 (977)
|...|.++.+.+|+++.|.|.+.|.|.| .|.|+|++.++.. +.. ...+.|.|.++ .|+|.|+|.|.|..|... .
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-~~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-PPA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-CCC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 3567889999999999999999999999 7999999998864 111 24568999887 488999999999999744 3
Q ss_pred EEEE
Q psy574 180 SATL 183 (977)
Q Consensus 180 ~~~L 183 (977)
.++|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 5554
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.5e-11 Score=99.81 Aligned_cols=73 Identities=33% Similarity=0.539 Sum_probs=59.5
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeec------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+|.|.+ .|.|.|.|.|+|++..... ...+|+.+..+++|.|.+++.+|+|.|+|.|.|..|...++.+.|+|
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 5899999 8999999999996432211 13467777778999999999999999999999999987777777664
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=95.83 Aligned_cols=69 Identities=30% Similarity=0.648 Sum_probs=57.3
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.+.|+|++..+. ..++.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 69 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE-ASASLTV 69 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE-EEEEEEC
Confidence 5799999 899999999999988773 3366666788999999999999999999999998754 4455543
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=97.25 Aligned_cols=69 Identities=29% Similarity=0.468 Sum_probs=60.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
++|.|.+.|.|.|.|.|+|++..+. ..++....++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999998875 34666667789999999999999999999999997 567788876
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=96.31 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=60.2
Q ss_pred eEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 116 ~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++.|.|.+.|.|.|.+.|+|++..+.. .++.+. ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999998843 444443 2468999999999999999999999999998888875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=99.78 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=67.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
.|..+.+.+|++++|.|.+ .+ |.+.+.|+|++..+.... ..++... .+.|.|.+++.+|+|.|+|.|.+..+...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred cceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 5778899999999999998 55 778999999998875432 2455555 35599999999999999999998776666
Q ss_pred eEeEEEEEE
Q psy574 89 STDAVLRVL 97 (977)
Q Consensus 89 s~~~~l~V~ 97 (977)
+..+.|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 676777775
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=95.80 Aligned_cols=69 Identities=25% Similarity=0.421 Sum_probs=53.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC-ceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA-GTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~-g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|.+.|+|||+++.. ...++.. .+++|.|.+++.+|+|.|+|.|.|.. +......+.|
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~-~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAE-KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCC-CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4689999 8999999999999999843 2245544 35689999999999999999999985 3333333333
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=99.29 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=68.2
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe--cc--ceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL--PS--RSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
.|..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. .+ .+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 466788999999999999999999999999999887543 33332 21 37999999999999999999999999888
Q ss_pred EEEEEE
Q psy574 180 SATLTV 185 (977)
Q Consensus 180 ~~~L~V 185 (977)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 887765
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=101.16 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=65.3
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCC-CeEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQCVV 80 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D-~G~Y~C~a 80 (977)
..+..+.+.+|++++|.|.+ .|.|.| .|.|++++..+......|+.+... +.|.|.+++.+| .|.|.|.|
T Consensus 6 ~~~~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A 84 (98)
T cd05758 6 TSEATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTA 84 (98)
T ss_pred cCCCcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEE
Confidence 45667889999999999999 899998 699999999986555567777643 379999999955 89999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|..|...
T Consensus 85 ~N~~G~~~ 92 (98)
T cd05758 85 WNSFGSGT 92 (98)
T ss_pred EcCCCccc
Confidence 99999744
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=100.97 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=64.4
Q ss_pred ccceEEeCCCcEEEEEECCCC-----CCCCeEEEEeCCEEeecC--CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 12 PKSQRVAAGDTALLECGPPRG-----HPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g-----~P~~~v~W~k~g~~l~~~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+....+.+|+++.|.|.+ .+ .|.+.|.|+|+|..+... ...|+.. .++.|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 6 DKKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred eeEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCC
Confidence 356788999999999998 56 688999999999765322 2345544 36889999999999999999999998
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
|... ..+.|+|
T Consensus 84 g~~~-~~~~L~v 94 (94)
T cd05756 84 YCMK-VSISLTV 94 (94)
T ss_pred ccEE-EEEEEEC
Confidence 8754 3455553
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=95.79 Aligned_cols=69 Identities=30% Similarity=0.657 Sum_probs=60.0
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++..+...+.... ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999988766544433 4568999999999999999999999999988888877
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=98.63 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=66.1
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
+++....|.+|++++|.|.+..+.+...+.|+|+|..+.. ...++.|.|.+++.+|+|.|+|.+.+..+...|
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 4455668999999999999855677789999999987731 123568999999999999999999999998888
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|+|
T Consensus 77 ~~~~i~~ 83 (83)
T cd05753 77 EPVSITV 83 (83)
T ss_pred CCEEEEC
Confidence 8777765
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-10 Score=100.64 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=73.2
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........+++.+... .+.+.|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~- 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-ARVSSLTLKDVQLTDAGRYD- 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-ccEEEEEECcCCcCcCEEeE-
Confidence 45554 4567889999999999999999999999999885443211112345554332 34469999999999999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy574 268 CLGVNAAGSDLARASLTV 285 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V 285 (977)
|.|.|..|....++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999988888764
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=95.40 Aligned_cols=70 Identities=26% Similarity=0.587 Sum_probs=56.6
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.|.|+|++..+... .+.....+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence 4799999 89999999999999877432 222334568999999999999999999999999744 5566665
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-10 Score=94.99 Aligned_cols=75 Identities=28% Similarity=0.365 Sum_probs=62.5
Q ss_pred EEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 206 v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
++|.|.+.|.|.|.|.|+|++..+.. ...++.+.....+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~----~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~-C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY----NTDRISLYQDNCGRICLLIQNANKEDAGWYT-VSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC----CCCcEEEEEcCCCeEEEEECCCCcccCEEEE-EEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999987632 2346666554345567999999999999999 999999999999888765
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=94.94 Aligned_cols=71 Identities=32% Similarity=0.683 Sum_probs=57.0
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++.|.|.+ .|.|.|.+.|+|||..+... .++.+.. .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLS--GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCC--CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 47899999 99999999999999998433 3555442 3579999999999999999999999874 34455543
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-10 Score=94.82 Aligned_cols=73 Identities=34% Similarity=0.662 Sum_probs=59.6
Q ss_pred CCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+.+.|.|.+ .|.|.|.+.|++ +++.+. ...+..+..+++|.|.++..+|.|.|+|+|.|..|.. +..+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 7899999999 899999999997 676663 3345666668899999999999999999999999874 34455543
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=94.85 Aligned_cols=72 Identities=25% Similarity=0.511 Sum_probs=61.5
Q ss_pred CCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+.+.|.|.+.|.|.|.+.|++ ++..+.. .+.....+++|.|.++..+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 5555543 3445557789999999999999999999999999888888765
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=97.63 Aligned_cols=76 Identities=21% Similarity=0.476 Sum_probs=63.7
Q ss_pred EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe--ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
....|+++.|.|.+.|.|.|.+.|+|++..+........ ....|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456799999999999999999999999988754332222 3468999999999999999999999999888887764
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-10 Score=95.52 Aligned_cols=69 Identities=30% Similarity=0.590 Sum_probs=56.3
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCC--ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEE--EEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKIS--ASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~L~V 185 (977)
++|.|.+.|.|.|.|.|+|++..+... ++.+. .++.|.|.++..+|+|.|+|.|.|..|... +.+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 579999999999999999999988653 33333 346899999999999999999999999864 4555554
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=94.94 Aligned_cols=69 Identities=28% Similarity=0.481 Sum_probs=55.0
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.|.|.+ .|.|.|.+.|+|||+.+... .++. ..+++|.|.+++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~ 69 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL 69 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence 4799999 89999999999999999533 3443 3467899999999999999999999987633 3344443
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-10 Score=95.00 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=56.2
Q ss_pred EEEEEecccCceEEEEEECCeeCCCCceE---Ee------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMS---VL------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 118 ~l~C~v~g~p~~~i~W~k~~~~l~~~~~~---~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
-|.|.+.|+|.|+|+|+|++..|..++.. +. ..+.|.|.++..+|+|.|+|.|+|..|..++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999999999765432 11 235799999999999999999999999988877765
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-10 Score=99.05 Aligned_cols=76 Identities=22% Similarity=0.450 Sum_probs=57.0
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeC----CEEeecCCCceEEEe----------cCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~----g~~l~~~~~~r~~~~----------~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|++++|.|.+ .|.|.|.|+|+|+ |..+......+.... ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 7899999999 8999999999996 344422222221111 135799999999999999999999999
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
.. +..+.|.|.
T Consensus 80 ~~-~~sa~L~V~ 90 (90)
T cd04974 80 PS-HHSAWLTVL 90 (90)
T ss_pred cc-cCCEEEEeC
Confidence 74 456777763
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=94.85 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=57.5
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEe-ecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l-~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.|.|+|+|..+ ......|+.+. .++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 4799999 89999999999998643 22334566554 35789999999999999999999999974 45677776
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-10 Score=97.52 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=64.1
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEecc----ceEEEccCccCCCeEEEEEEEeCCe-
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVG- 175 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~n~~g- 175 (977)
...|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44567788999999999999999875 999998 4554433 44444322 4799999999999999999999865
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
..++++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 4677777764
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=99.31 Aligned_cols=79 Identities=25% Similarity=0.374 Sum_probs=65.3
Q ss_pred CceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCC---CceEE-eccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 107 KDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPE---DRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~---~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+..+.+|+.+.|.|.+.| .|.+.|.|||++..+.. .+.++ ..++.|.|.++..+|+|.|+|.+.|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 4567889999999999988 68899999999876432 11222 246789999999999999999999999999
Q ss_pred EEEEEEEE
Q psy574 178 SASATLTV 185 (977)
Q Consensus 178 ~~~~~L~V 185 (977)
+..++|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88888875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=94.71 Aligned_cols=70 Identities=39% Similarity=0.697 Sum_probs=58.3
Q ss_pred EEEEEEecccCceEEEEEECCeeC-CC---CceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAM-PE---DRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l-~~---~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.++|+|++... +. .++.+. .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 479999999999999999998642 22 234443 45689999999999999999999999999999999873
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=95.89 Aligned_cols=68 Identities=28% Similarity=0.516 Sum_probs=56.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
|++++|.|.+ .|.|.|.|.|+|++..+.. ..|+.+.. .+.|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 7899999999 8999999999999988843 23554432 2579999999999999999999999876543
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=94.32 Aligned_cols=73 Identities=41% Similarity=0.618 Sum_probs=61.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+.|.|.+ .|.|.|.|.|+|+++.+..+...++.+..++ .|.|.+++.+|.|.|+|.+.|..|..+ ..+.|.|.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE 74 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence 4799999 8999999999999999865555667766555 699999999999999999999998754 55677775
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.5e-10 Score=98.34 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCC---CceEEecc-------ceEEEccCcc-CCCeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVLPS-------RSLQLSDVRL-EDAGEY 166 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~---~~~~~~~~-------~~L~I~~v~~-~D~G~Y 166 (977)
||.+ ..+....+.+|+++.|.|.+.|.|.| .|.|++++..+.. .++.+... ..|.|.++.. +|.|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4555 44667788999999999999999999 6999999988753 45655432 4799999998 558999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy574 167 VCEAENAVGKISASATL 183 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L 183 (977)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999988777765
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=94.38 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=59.0
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|++++..+... ++.+. ..+.|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 789999999999999999999998887653 44443 236899999999999999999999999876555443
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-10 Score=97.93 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeC----CEEeecCCCceEEEec----------CcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLVD----------GTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~----g~~l~~~~~~r~~~~~----------~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|++++|.|.+ .|.|.|.|.|+|+ |..+..+...+..+.. .+.|.|.+++.+|+|.|+|+|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 7899999999 8999999999984 5555333222222211 14799999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
.. +..+.|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 74 45567766
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-10 Score=94.78 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=50.7
Q ss_pred EEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--------CcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--------GTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 25 L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.+ .|.|.|.|+|+|||+.|......+..+.. .+.|.|.+++.+|+|.|+|+|.|..|...
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 68998 99999999999999999544322222221 35799999999999999999999999754
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-10 Score=96.97 Aligned_cols=78 Identities=23% Similarity=0.466 Sum_probs=60.7
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.+..|++++|.|.+ .+.|.|.+.|+|+|..+..... .......+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|
T Consensus 4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEE
Confidence 557789999999999 8899999999999998843322 1122224679999999999999999999999864 344444
Q ss_pred E
Q psy574 95 R 95 (977)
Q Consensus 95 ~ 95 (977)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 4
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-10 Score=91.04 Aligned_cols=63 Identities=24% Similarity=0.496 Sum_probs=51.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|++++|.|.+ .|.|.|.|.|+|+|+.+.. ..++.. .+..|.|.++. |+|.|+|.|.|..|...
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIE 63 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCC--ccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEE
Confidence 7899999999 8999999999999998843 234433 34579999974 89999999999999754
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.7e-10 Score=93.67 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=49.9
Q ss_pred EEEECCCCCCCCeEEEEeCCEEeecCCCceEEE--e----cCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--V----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 25 L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~--~----~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.+ .|+|.|.|+|+|||+.|..+......+ . ..+.|.|.++..+|+|.|+|+|+|..|+..
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 71 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE 71 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc
Confidence 68888 999999999999999995332111111 1 135799999999999999999999999744
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-10 Score=98.72 Aligned_cols=73 Identities=38% Similarity=0.536 Sum_probs=58.1
Q ss_pred CCeEEEEEEecccCceEEEEEECC----eeCCC-C--ceEEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLG----SAMPE-D--RMSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~----~~l~~-~--~~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
|++++|.|.+.|+|.|.|+|+|++ ..+.. + ..... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999963 22211 1 11111 2357999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999874
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=94.46 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=55.8
Q ss_pred EEEEEecccCceEEEEEECCeeCCCCceE-E--e--------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMS-V--L--------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 118 ~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-~--~--------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.|.|.+.|.|.|.|+|+|+|..+..++.. . . ..+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999998754321 1 1 134799999999999999999999999988877765
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-10 Score=91.11 Aligned_cols=67 Identities=22% Similarity=0.157 Sum_probs=53.5
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCce-EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.|.|.+.|.|.|.+.|+|++.++..... ....+.+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46899999999999999999999865422 22355689999999999999999999986654444333
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=94.34 Aligned_cols=75 Identities=27% Similarity=0.530 Sum_probs=57.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCE---E--eecC-CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGH---P--IDFE-NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~---~--l~~~-~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
|++++|.|.+ .|.|.|.|.|+|++. . +... ...++.....+.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLR-ANFP 78 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEE-EEEE
Confidence 7899999999 899999999999732 1 1111 12344555567899999999999999999999999744 4556
Q ss_pred EEE
Q psy574 94 LRV 96 (977)
Q Consensus 94 l~V 96 (977)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 554
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-10 Score=94.42 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=62.7
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
|.+...|....+.+|++++|.|.+.+.|. ..+.|+||+..+.. ....|.|.++ .+|+|.|+|.|.|. ..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S 71 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLS 71 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCC
Confidence 45677888899999999999999988775 46999999988732 4578999999 99999999999875 445
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..+.|+|
T Consensus 72 ~~v~l~V 78 (78)
T cd05752 72 DPVHLEV 78 (78)
T ss_pred CCEEEeC
Confidence 5555544
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-10 Score=94.25 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=59.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCe---e--CCC----CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGS---A--MPE----DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~---~--l~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|+|++. . +.. .++.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 1 111 123333557899999999999999999999999999999887
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 6
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=95.75 Aligned_cols=83 Identities=24% Similarity=0.531 Sum_probs=61.1
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec------CCCceEEEec----CcEEEEcCCCCCCCeEEEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~------~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~a 80 (977)
...++.+.+|++++|.|.+ .+.|.+.|.|+|++..+-. -.+.|+.+.. +.+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 3 VTQDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 3467899999999999999 8899999999997754311 1234665432 358999999999999999999
Q ss_pred EecCceeeeEeEEEEE
Q psy574 81 KNVAGTRESTDAVLRV 96 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V 96 (977)
.... ..++.+.|+|
T Consensus 82 ~t~~--~~~~~~~~~v 95 (95)
T cd05882 82 FTMP--VRTAKATVTV 95 (95)
T ss_pred Eeec--cccEEEEEEC
Confidence 8632 2234445543
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=95.39 Aligned_cols=72 Identities=40% Similarity=0.580 Sum_probs=57.6
Q ss_pred CCeEEEEEEecccCceEEEEEEC----CeeCCC-Cc--eEEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRL----GSAMPE-DR--MSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~----~~~l~~-~~--~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
|+++.|.|.+.|.|.|.|.|+|+ +..+.. +. ..+. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999995 333321 11 1111 1147999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy574 177 ISASATLTV 185 (977)
Q Consensus 177 ~~~~~~L~V 185 (977)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=93.13 Aligned_cols=69 Identities=35% Similarity=0.531 Sum_probs=56.1
Q ss_pred EEEEEEecccCceEEEEEECCeeC---------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V 185 (977)
++|.|.+.|.|.|.+.|+|++... ..+++.+..+++|.|.++..+|+|.|+|.|.|..|.. ++.+.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999975421 2345555577899999999999999999999999974 66677664
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=91.03 Aligned_cols=69 Identities=30% Similarity=0.585 Sum_probs=54.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.+.|+|++..+.. . +... ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~-~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPA-D--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCC-C--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 5799999 8999999999999988732 2 2222 235689999999999999999999999864 34556655
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=93.72 Aligned_cols=71 Identities=23% Similarity=0.431 Sum_probs=56.8
Q ss_pred ceEEeCCCcEEEEEECCCC----CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 14 SQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+.+.+|+++.|.|....+ +|.+.|.|+||++++... ..+ +..++.|.|.+++.+|+|.|+|++.|..+..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-~~~--~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-RKR--FVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-ccE--EecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 3678999999999976322 367899999999999532 222 2367899999999999999999999987653
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=90.42 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.|.+..+..|+++.|.|.+.+ +.+.|.|++|+..+..+ ......++.|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 467889999999999999864 67899999999998754 2223466789999999999999999999863
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=92.96 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=63.1
Q ss_pred CeEEeCCCceEEeC---CCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEEccCc-cCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSA---SSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVR-LEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~---G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n 172 (977)
|.|...|.+..+.+ |+.+.|.|.+.|+|.+.|+|+|++..+.. .++ ...++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY-SLVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE-EEECCEEEEecCCccCCCEEEEEEEEc
Confidence 67788888876654 46799999999999999999999998842 233 2356789999887 5899999999999
Q ss_pred CCeeEE
Q psy574 173 AVGKIS 178 (977)
Q Consensus 173 ~~g~~~ 178 (977)
..|...
T Consensus 81 ~~G~~~ 86 (91)
T cd04967 81 IVGTVL 86 (91)
T ss_pred CCCEEE
Confidence 999754
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=91.88 Aligned_cols=79 Identities=29% Similarity=0.573 Sum_probs=66.4
Q ss_pred EeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
+..|....+.+|++++|.|.+.+ .|.+.+.|++++..++.. ....++.|.|.+++.+|+|.|+|.|.|..|..++.+
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 44677778999999999999964 788899999998776542 223467899999999999999999999999988877
Q ss_pred EE
Q psy574 182 TL 183 (977)
Q Consensus 182 ~L 183 (977)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 76
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-09 Score=91.26 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=69.0
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|.++++..++.++|.|+|+++ .++.+.+|.|+|+.......+....+. .....++|.+|+|++.|.|+|+|.+..|
T Consensus 3 P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 3 PENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVP--GNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEE--TTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeee--eeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 478999999999999999999 588999999999988865445544443 4566999999999999999999999999
Q ss_pred eCCCC
Q psy574 625 DGKPS 629 (977)
Q Consensus 625 ~g~~s 629 (977)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 88654
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=92.25 Aligned_cols=75 Identities=29% Similarity=0.463 Sum_probs=61.6
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
...|..+.+.+|++++|.|.+..+.|.+.|.|+|++..+.. +. ...++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----RA-MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----cc-cccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 34677889999999999999844578899999999877632 11 23468899999999999999999999988754
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=89.55 Aligned_cols=70 Identities=26% Similarity=0.547 Sum_probs=59.6
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCC---ceEEecc-ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|++..+..+ ++.+..+ ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 468999999999999999999887543 3444433 479999999999999999999999999999999885
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=90.57 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=58.9
Q ss_pred CCeEEEEEEeccc--CceEEEEEECCeeCCCCce----EE-----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 114 SSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM----SV-----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 114 G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~~----~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
|+++.|.|.+.|. |.+.+.|++++..+..... .. .....|.|.+++.+|+|.|+|.|.|..+..++++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 8899999998765532110 01 12358999999999999999999999999888888
Q ss_pred EEEe
Q psy574 183 LTVQ 186 (977)
Q Consensus 183 L~V~ 186 (977)
|.|+
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8763
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=88.85 Aligned_cols=66 Identities=26% Similarity=0.577 Sum_probs=51.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+.|.|.+..+.|.+.+.|+|||+.+.... ..++.+.. .+.|.|.+++.+|+|.|+|+|.|..|...
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 47999985567889999999999985432 23444432 35799999999999999999999988643
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=90.17 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=63.7
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-----ceEEeccceEEEccCccCCCeEEEEEEEeCCe-eEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KIS 178 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~ 178 (977)
.|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+... ++.. ....|.|.+++.+|+|.|+|.|.+..+ ...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 356678899999999999987 77899999998876543 3333 445699999999999999999997654 466
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
+...|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 77777775
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=87.34 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=49.9
Q ss_pred EEEEEEecccCceEEEEEECCeeCC---CCceEEe-ccceEEEccCc----cCCCeEEEEEEEeCCeeEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVL-PSRSLQLSDVR----LEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~-~~~~L~I~~v~----~~D~G~Y~C~a~n~~g~~~ 178 (977)
+.|.|.+.|+|.|.|+|+|++..+. ..++.+. .+++|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4699999999999999999998763 3445443 56899998874 2479999999999999743
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=90.42 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=63.0
Q ss_pred ceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.+.+.+|+++.|.|...+ +|.+.+.|+|++.++...+..+..++.|.|.++..+|+|.|+|.|.|..+.....+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 457889999999998743 257899999999999876655557789999999999999999999998776554444
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
.++
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 433
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-09 Score=88.62 Aligned_cols=66 Identities=26% Similarity=0.555 Sum_probs=53.9
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCce-E---Ee---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRM-S---VL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~-~---~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+.|.|.+.| .|.+.+.|+|++..+..... . +. ....|.|.++..+|+|.|+|.|.|..|.....++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999988 99999999999988864321 1 21 2468999999999999999999999998776654
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=88.03 Aligned_cols=67 Identities=28% Similarity=0.527 Sum_probs=52.6
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC---CceEEe-ccceEEEccCcc----CCCeEEEEEEEeCCeeEE-EEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRL----EDAGEYVCEAENAVGKIS-ASATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~-~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~-~~~~L 183 (977)
+.|.|.+.|.|.|.|+|+|++..+.. .++.+. .++.|.|.++.. +|+|.|+|.|.|..|... ..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 47999999999999999999988743 234333 468999998854 789999999999999743 34443
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=89.91 Aligned_cols=79 Identities=25% Similarity=0.471 Sum_probs=61.7
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECC--------e-eCCCCceEEe----ccceEEEccCccCCCeEEEEEEEe
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--------S-AMPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--------~-~l~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+ . .+..+|+... .+.+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 56788999999999999999999999998632 1 2344566553 336899999999999999999987
Q ss_pred CCeeEEEEEEEEE
Q psy574 173 AVGKISASATLTV 185 (977)
Q Consensus 173 ~~g~~~~~~~L~V 185 (977)
.. ..+..+.|+|
T Consensus 84 ~~-~~~~~~~l~v 95 (95)
T cd07701 84 MP-VKTSKAYLTV 95 (95)
T ss_pred ec-CccEEEEEEC
Confidence 53 3466777765
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-09 Score=86.22 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=51.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC---CceEEe-ccceEEEccCcc----CCCeEEEEEEEeCCeeEEE-EEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRL----EDAGEYVCEAENAVGKISA-SATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~-~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~-~~~L 183 (977)
+.|.|.+.|.|.|+|+|+|++..+.. .++.+. .+++|.|..+.. .|+|.|+|.|.|..|...+ .+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999999999999988632 233333 468899988874 3789999999999997443 4433
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=87.51 Aligned_cols=77 Identities=17% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--ceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~ 93 (977)
|++++|.|.+ .+.|.+.+.|+++++....... .+..+.. ...|.|.+++.+|+|.|.|.|.|..+ ...+..+.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 8999999999 7889999999997764321111 1222221 34799999999999999999998754 34567777
Q ss_pred EEEE
Q psy574 94 LRVL 97 (977)
Q Consensus 94 l~V~ 97 (977)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7775
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-09 Score=87.12 Aligned_cols=65 Identities=28% Similarity=0.653 Sum_probs=51.6
Q ss_pred EEEEEECCCC-CCCCeEEEEeCCEEeecCCCce-EEEe---cCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRG-HPEPTLVWKKNGHPIDFENSKR-LRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g-~P~~~v~W~k~g~~l~~~~~~r-~~~~---~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
++|.|.+ .| .|.+.+.|+|||+.+......+ +.+. ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 4799999 56 9999999999999996443322 2232 235799999999999999999999998743
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=87.90 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=65.6
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...... ...|+.+.....+...|.|.+++.+|+|.|+ |.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~Yt-C~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYT-CSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEE-EEEEe
Confidence 5678999999999999999999999999988754322211 2356665544334569999999999999999 99988
Q ss_pred CCCceeEEEEEE
Q psy574 273 AAGSDLARASLT 284 (977)
Q Consensus 273 ~~g~~~~~~~l~ 284 (977)
.....+.+.|.
T Consensus 84 -~~~~~~~~~~~ 94 (95)
T cd05882 84 -MPVRTAKATVT 94 (95)
T ss_pred -eccccEEEEEE
Confidence 44555555554
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=86.91 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=58.4
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee--cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe-cCceee
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRE 88 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~--~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n-~~g~~~ 88 (977)
.+.+.+|++++|.|.. +.|.+.|.|+|+ +.... .....|+... ++.|.|.+++++|+|.|+|.+.+ ..+. .
T Consensus 5 ~~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~ 80 (91)
T cd05871 5 VVYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDAGVYTCTAVEHSFSQ-T 80 (91)
T ss_pred EEEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHCEEEEEEEEccCCeE-E
Confidence 4678999999999996 478899999983 32221 1123466554 56799999999999999999985 4443 3
Q ss_pred eEeEEEEEE
Q psy574 89 STDAVLRVL 97 (977)
Q Consensus 89 s~~~~l~V~ 97 (977)
...+.|+|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 446677765
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=86.99 Aligned_cols=79 Identities=34% Similarity=0.635 Sum_probs=63.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+..++ ..+.+|+.++|.|.+ .+.|...+.|++++..+... ...|.|.++..+|.|.|+|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCC
Confidence 4455444 679999999999999 68888999999999888422 12288899999999999999999877
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
...+..+.|+|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 77777777765
|
... |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=86.10 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=57.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC-----ceEEe---ccceEEEccCccCCCeEEEEEEEeCCe--eEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG--KISASATL 183 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-----~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g--~~~~~~~L 183 (977)
|++++|.|.+.|.|.+.+.|+++++..... +..+. ...+|.|.+++.+|+|.|+|.|.|..+ ...+++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 789999999999999999999877543211 11111 245899999999999999999999766 57788888
Q ss_pred EEe
Q psy574 184 TVQ 186 (977)
Q Consensus 184 ~V~ 186 (977)
+|+
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 875
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=88.86 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=65.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEee------------cCCCceEEEecCcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID------------FENSKRLRLVDGTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~------------~~~~~r~~~~~~g~L~I~~v~~ 70 (977)
++++|.+..+.+|++|+|.|.. ...+...+.|+|+. ..|. ....+|..+..+|+|.|.+++.
T Consensus 1 ~tie~~p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~ 79 (105)
T cd05774 1 LTIELVPPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ 79 (105)
T ss_pred CeEeccCCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc
Confidence 3678888899999999999965 22333489999952 2221 1246788899999999999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLR 95 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~ 95 (977)
+|+|.|+|.+.+.....+...+.|.
T Consensus 80 ~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 80 KDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999987755444444444
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=87.18 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=59.0
Q ss_pred ceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 108 DTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
...+.+|+.++|.|.+. +.+...+.|+|++..+... .....|.|.+++.+|+|.|+|.+.+..+. .+..+.|+|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 44789999999999984 4667789999999876531 14568999999999999999999998875 444555554
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-08 Score=91.20 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=80.8
Q ss_pred ceEEeCCCcEEEEEECC--CCCCCCeEEEEeCC----EE-e----------ecCCCceEEEec-Cc--EEEEcCCCCCCC
Q psy574 14 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNG----HP-I----------DFENSKRLRLVD-GT--NLAIQDSRKTDD 73 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~--~g~P~~~v~W~k~g----~~-l----------~~~~~~r~~~~~-~g--~L~I~~v~~~D~ 73 (977)
.+.+..||.++|.|... ..-+...|+|+|.+ +. + .-+.++|+.+.. .| +|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 57899999999999762 22356789999942 11 1 123456666632 23 599999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP 141 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~ 141 (977)
|.|+|.+........ ..-.|++-.|-.+....+......-+...+.|.+.|+|.|.++|.-+.+.-+
T Consensus 100 GtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~~~ 166 (221)
T PHA03376 100 GNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 166 (221)
T ss_pred ceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCCCC
Confidence 999999986542221 1113333322222222211111225667899999999999999998865443
|
|
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=87.93 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=56.4
Q ss_pred ceEEeCCCcEEEEEECC----CCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 14 SQRVAAGDTALLECGPP----RGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~----~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+.+.+|.+..|.|.-. ...+.+.|+||||+++|.. ...++.. ..++.|.|.++..+|+|.|+|++.+..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 35688999999999531 2346779999999999843 3345544 335689999999999999999999986543
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-08 Score=86.81 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
+.++.+.+|++++|.|.+.+.|.+.+.|++.+..++... ....+|+.+.....+..+|.|.+++.+|+|.|+ |.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~-C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYT-CSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEE-EEeE
Confidence 466789999999999999999999999997554332211 113567776443334569999999999999999 9999
Q ss_pred cCCCceeEEEEEEE
Q psy574 272 NAAGSDLARASLTV 285 (977)
Q Consensus 272 n~~g~~~~~~~l~V 285 (977)
+. ......+.|.|
T Consensus 83 t~-~~~~~~~~l~v 95 (95)
T cd07701 83 TM-PVKTSKAYLTV 95 (95)
T ss_pred ee-cCccEEEEEEC
Confidence 84 44466666654
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=85.08 Aligned_cols=77 Identities=26% Similarity=0.500 Sum_probs=63.1
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.+..|+.+.|.|.+.+.|.+.+.|+|++..+.... .... ....|.|.++..+|+|.|.|.+.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 356789999999999999999999999998875321 2211 23479999999999999999999999998888887
Q ss_pred EE
Q psy574 184 TV 185 (977)
Q Consensus 184 ~V 185 (977)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-08 Score=85.36 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=63.0
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCC-CeEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQCVV 80 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D-~G~Y~C~a 80 (977)
...+.+.+.+|+++.|.|.+ .+.|. ..|.|.+++..|.....+|+.+.+. ..|.|.++..+| .|.|.|.|
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred ecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 45567899999999999999 55555 4789999988886655678877642 369999998877 79999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|+.|...
T Consensus 85 ~N~~G~d~ 92 (98)
T cd05898 85 WNSFGSGT 92 (98)
T ss_pred EeCCccce
Confidence 99999753
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=86.60 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=53.2
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC------------CCceEEEec----Cc--EEEEcCCCCCCCeEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE------------NSKRLRLVD----GT--NLAIQDSRKTDDGRY 76 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~------------~~~r~~~~~----~g--~L~I~~v~~~D~G~Y 76 (977)
+.+.+|++|+|.|.+ .+.+.+.+.|+++++..... ...|+.... +| +|+|.+++.+|+|+|
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 578999999999999 77889999999877443111 122322222 22 599999999999999
Q ss_pred EEEEEecCce
Q psy574 77 QCVVKNVAGT 86 (977)
Q Consensus 77 ~C~a~n~~g~ 86 (977)
.|.+.|..++
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999987554
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=79.39 Aligned_cols=63 Identities=33% Similarity=0.734 Sum_probs=52.0
Q ss_pred CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 19 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+|++++|.|.+ .+.|.+.+.|+|++..+. ........++.|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999997 788889999999999885 2223334467899999999999999999988654
|
|
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=83.25 Aligned_cols=79 Identities=29% Similarity=0.593 Sum_probs=59.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCce-EEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKR-LRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r-~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
..+..|+.++|.|.+ .+.|.+.+.|+|++..+....... .... ....|.|.+++.+|.|.|.|.+.|..|... .++
T Consensus 4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~-~~~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN-HTY 81 (85)
T ss_pred eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEE-EEE
Confidence 567789999999999 788999999999998874322111 1111 124699999999999999999999888743 445
Q ss_pred EEE
Q psy574 93 VLR 95 (977)
Q Consensus 93 ~l~ 95 (977)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 554
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=85.54 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=56.9
Q ss_pred CceEEeCCCeEEEEEEe-cccCceEEEEEECCeeC--C-CCceEEe-ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 107 KDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAM--P-EDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l--~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+.+|+.+.|.|.. .|.|.+.|.|++++..+ . ..+..+. .++.|.|.+|+.+|+|.|+|.|.|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 44578999999999987 78899999999998754 2 2333344 479999999999999999999999764
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=82.39 Aligned_cols=66 Identities=27% Similarity=0.521 Sum_probs=52.0
Q ss_pred EEEEEEec-ccCceEEEEEECCeeCCCC-----ceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 117 IVFECSVG-GDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 117 v~l~C~v~-g~p~~~i~W~k~~~~l~~~-----~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+.|.|.+. +.|.+.+.|+|++..+... ++.+. ....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 46999985 4688899999999887532 12222 2367999999999999999999999998776654
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=82.71 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=70.8
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEcc---CCceEEEEeecccCC-C
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITS---DGMNLLKIQNVSRTA-A 262 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~---~g~s~L~I~~v~~~d-~ 262 (977)
||.+ .....+.+.+|+.++|.|.+.+.|+| .|.|..++..+. .....+|.+.... ...++|.|.++...| .
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~---~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~ 77 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLE---SGTSERYTVERTSTGSGVLSTLTINNIMEADFQ 77 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEcccccc---CCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence 4555 55667789999999999999888887 678988876442 1234678776542 234899999998877 7
Q ss_pred CeEEEEEEEcCCCceeEEEEE
Q psy574 263 PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|.|. |.|.|..|.....+.|
T Consensus 78 g~Y~-C~a~N~~G~d~~~i~L 97 (98)
T cd05898 78 THYN-CTAWNSFGSGTAIIQL 97 (98)
T ss_pred cEEE-EEEEeCCccceEEEEe
Confidence 9999 9999999999877665
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=82.48 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=58.5
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCe--e----CC-CCceEEeccceEEEccCccCCCeEEEEEEE-eCCeeEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGS--A----MP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAE-NAVGKISAS 180 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~----l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~ 180 (977)
+.+.+|+++.|.|.. +.|.+.+.|+|.+. . +. ..++.. .++.|.|.+++.+|+|.|+|.|. |..+.....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 457899999999997 47889999998532 1 11 233333 55779999999999999999998 566666678
Q ss_pred EEEEEe
Q psy574 181 ATLTVQ 186 (977)
Q Consensus 181 ~~L~V~ 186 (977)
++|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 888875
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-08 Score=77.33 Aligned_cols=63 Identities=33% Similarity=0.682 Sum_probs=53.0
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+|++++|.|.+.+.+.+.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999998889999999999988873333334567899999999999999999988754
|
|
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=83.83 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=60.1
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCee---------CCCCceEEe----ccceEEEccCccCCCeEEEEEEEe
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------l~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+++..+.+|++++|.|.+.+.+.+.+.|++.+.. +...|+.+. ....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 4567899999999999998888899999863221 233455553 235799999999999999999987
Q ss_pred CCeeEEEEEEEEE
Q psy574 173 AVGKISASATLTV 185 (977)
Q Consensus 173 ~~g~~~~~~~L~V 185 (977)
... .++.+.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 653 466666665
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=80.34 Aligned_cols=66 Identities=27% Similarity=0.470 Sum_probs=55.1
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+.+.+.+|++++|+|.. .+ +.+.+.|++||..+.. +.|+....+| |.|.+++++|+|.|+|.+...
T Consensus 4 ~~~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~~--~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLNA--QFSYRVGTDG-LLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCC-CC-CCccEEEEECCcccCC--CcceEEeCCC-CEEEECCHhhCEEEEEEEecC
Confidence 46889999999999988 44 4679999999999843 3677777666 789999999999999998743
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-08 Score=84.05 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCeEEEEEEEecC--CCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 203 GRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 203 G~~v~L~C~~~g~--p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|+.++|.|.+.+. |.+.+.|.+++..+....... .+..........+.|.|.+++.+|+|.|+ |.|.|..|....+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~-C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-TRQSLSEATELSSTLTIPNATLKDSGTYT-CAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-cccccccceEEEEEEEECCCChhhCEEEE-EEEccCCCceEEE
Confidence 7899999999999 888999998876542111000 01111111112359999999999999999 9999999999888
Q ss_pred EEEEE
Q psy574 281 ASLTV 285 (977)
Q Consensus 281 ~~l~V 285 (977)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 88776
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=80.40 Aligned_cols=78 Identities=32% Similarity=0.624 Sum_probs=60.9
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe-eEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KIS 178 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~ 178 (977)
|.+...+ ..+.+|+++.|.|.+.+.|...+.|++++..+... ...|.|.++..+|+|.|+|.+.+..+ ..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s 73 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTS 73 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence 4444334 56899999999999999888999999998777632 12277899999999999999999665 466
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..++|+|
T Consensus 74 ~~~~v~V 80 (80)
T PF13895_consen 74 TSVNVTV 80 (80)
T ss_dssp EEEEEEE
T ss_pred eeEEeeC
Confidence 7777765
|
... |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=79.70 Aligned_cols=81 Identities=32% Similarity=0.638 Sum_probs=64.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|..+.+.+|++++|.|.+ .+.+.+.+.|+++ ++.+. ...++.+... ..|.|.+++.+|+|.|.|.+.+..+..
T Consensus 1 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 1 PPSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 456789999999999999 5568889999998 88774 3345555544 579999999999999999999877765
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00410 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 444 66655
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=79.70 Aligned_cols=81 Identities=32% Similarity=0.638 Sum_probs=64.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|..+.+.+|++++|.|.+ .+.+.+.+.|+++ ++.+. ...++.+... ..|.|.+++.+|+|.|.|.+.+..+..
T Consensus 1 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 1 PPSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 456789999999999999 5568889999998 88774 3345555544 579999999999999999999877765
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00409 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 444 66655
|
|
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=77.28 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=50.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCC-----CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFEN-----SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-----~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
+.|.|....+.|.+.|.|||||++|.... .++++ ..+.|.|...+.+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t--~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS--VSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE--EEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999999999999999999999995321 11122 24579999999999999999999988653
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=91.69 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=97.1
Q ss_pred cEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHH
Q psy574 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLR 533 (977)
Q Consensus 454 ~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~ 533 (977)
.|+++........+...+++|+..|.|+|.|+|..|.-..|.++..+.....+. +|+
T Consensus 198 hwQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pk--------------aPp--------- 254 (516)
T KOG4802|consen 198 HWQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPK--------------APP--------- 254 (516)
T ss_pred cceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCC--------------CCc---------
Confidence 688887766777889999999999999999999988766666666655522211 110
Q ss_pred HHhhcccccCCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-EeecCccceEEECCCCCCc
Q psy574 534 RARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VLHAGEASGFLVTGLAHYS 611 (977)
Q Consensus 534 ~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t 611 (977)
++.-.++..+...+.-...|.|.|+ .+-++..|+|.|...-...+-.+.+ ....-.+..+.|.+|.|+.
T Consensus 255 ---------~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns 325 (516)
T KOG4802|consen 255 ---------SPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNS 325 (516)
T ss_pred ---------CcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCC
Confidence 0111122233333444578889888 7778999999997554211111111 0001123345599999999
Q ss_pred EEEEEEEEeecceeCCCC-C-ceEEec
Q psy574 612 RYEFFLVPFFGSVDGKPS-N-LRAVRT 636 (977)
Q Consensus 612 ~Y~~~V~a~n~~g~g~~s-~-~~~~~T 636 (977)
.|.+.|+|....|.+..- + ++.|.+
T Consensus 326 ~Y~VevqAi~y~g~~rLksek~~~F~~ 352 (516)
T KOG4802|consen 326 SYYVEVQAISYLGSRRLKSEKWMLFNT 352 (516)
T ss_pred eEEEEEEEEEeccCcccccceEEEEee
Confidence 999999999988876532 2 444444
|
|
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=81.54 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEee----------------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPID----------------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----------------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
|++|+|.|.. ...+...|.|+|+..... ....+|+.+..+++|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 8999999988 445667899999653210 12356788888899999999999999999999987
Q ss_pred CceeeeEeEEEE
Q psy574 84 AGTRESTDAVLR 95 (977)
Q Consensus 84 ~g~~~s~~~~l~ 95 (977)
.+......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 766555555554
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-07 Score=81.82 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=59.4
Q ss_pred CCceEEeCCCeEEEEEE-ecccCceEEEEEECCeeC-C-CCceEEeccceEEEccCccCCCe-EEEEEEEeCCe
Q psy574 106 PKDTTVSASSIIVFECS-VGGDAVLTVHWKRLGSAM-P-EDRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG 175 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~-v~g~p~~~i~W~k~~~~l-~-~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 175 (977)
.+.+.+.+|+.+.|.|. ..|.|.|.|.|++++..+ . ..|+.+..++.|.|.+++.+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 46778999999999998 599999999999876543 2 45666667899999999999999 89999998753
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-07 Score=79.98 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=63.8
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCC---CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG---DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
+.+..+.+|++++|.|.+.+.+.+.+.|++.+..+..... ....|+.+.....+...|.|.+++.+|+|.|+ |.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYT-CSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEE-EEEe
Confidence 3566889999999999998888889999875443322111 12357766443334468999999999999999 9998
Q ss_pred cCCCceeEEEEEEE
Q psy574 272 NAAGSDLARASLTV 285 (977)
Q Consensus 272 n~~g~~~~~~~l~V 285 (977)
+.. ...+.+.|.|
T Consensus 83 ~~~-~~~~~~~~~v 95 (95)
T cd05717 83 TMP-VQTAKATVTV 95 (95)
T ss_pred cCC-CceEEEEEEC
Confidence 765 3456666554
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=79.12 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCeEEEEEEecccC--ceEEEEEECCeeCCC----Cc--eEE----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 114 SSIIVFECSVGGDA--VLTVHWKRLGSAMPE----DR--MSV----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 114 G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~----~~--~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
|+++.|.|.+.+++ ...+.|.+.+..+.. .. ... .....|.|.+++.+|+|.|+|.|.|..+.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999997655 567899988764321 11 111 1246899999999999999999999999888888
Q ss_pred EEEEe
Q psy574 182 TLTVQ 186 (977)
Q Consensus 182 ~L~V~ 186 (977)
+|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88886
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=76.20 Aligned_cols=79 Identities=35% Similarity=0.606 Sum_probs=64.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ..++..... ..|.|.++..+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 77775 445554433 6899999999999999999998887766667
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=76.20 Aligned_cols=79 Identities=35% Similarity=0.606 Sum_probs=64.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ..++..... ..|.|.++..+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 77775 445554433 6899999999999999999998887766667
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=82.04 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=63.0
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|. ..|.+|++|+|.|.. ..+...+.|+|+|........ ......+.|.|.+++.+|+|.|+|.+.+..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKP--PEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEec--CCCCCEEEEEECCCCcccccc--CCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 577888885 579999999999987 367788999999987532110 011224579999999999999999998763
Q ss_pred -c-eeeeEeEEEEE
Q psy574 85 -G-TRESTDAVLRV 96 (977)
Q Consensus 85 -g-~~~s~~~~l~V 96 (977)
+ ...|..+.|.|
T Consensus 77 ~~~S~~Sd~lel~V 90 (91)
T cd05751 77 ALWSEPSDPLELVV 90 (91)
T ss_pred CccCCCCCcEEEEe
Confidence 1 22345455554
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=81.29 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=59.1
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeec---------------CCCceEEEec-CcEEEEcCCCCCCCeEEEEEEE
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------------ENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~---------------~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
..|++|+|.|....+.....|.|+|+...+-. .-..|+.+.. +++|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998733345568999986532211 1124666655 3789999999999999999999
Q ss_pred ecCceeeeEeEEEEEE
Q psy574 82 NVAGTRESTDAVLRVL 97 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~ 97 (977)
+..|..-...+.|.|+
T Consensus 82 ~~~~~~~~~~f~L~vy 97 (97)
T cd05775 82 TKNGVTITKEFTLHIY 97 (97)
T ss_pred cCCCCeEEEEEEEEeC
Confidence 8877766777777763
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.013 Score=77.49 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=188.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-EeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE--EecCceeeeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV--KNVAGTREST 90 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a--~n~~g~~~s~ 90 (977)
...+..|+.|+|.-.. .......+.|..++. .... ....+.. +-...|.|...+ .|..|... .
T Consensus 1706 ~~~aavn~~V~fs~~l-t~GS~vty~W~~gdG~s~~~-s~p~~tH-----------tf~~~G~y~VtVta~N~vss~~-~ 1771 (2740)
T TIGR00864 1706 DNPAAVNALINLSAEL-AEGSGLQYRWFLEEGDDLET-SEPFMSH-----------SFPSAGLHLVTMKAFNELGSAN-A 1771 (2740)
T ss_pred CCcccCCCeEEEEEEe-cCCCCcEEEEEECCCCCccc-CCCceEE-----------EccCCceEEEEEEEEccccccc-e
Confidence 3456789999998776 566677899986442 2211 1111111 134567787655 45666544 4
Q ss_pred eEEEEEEcCCe---EEeC-CCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeE
Q psy574 91 DAVLRVLVKPY---IIRG-PKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 91 ~~~l~V~~~P~---~~~~-p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
...+.|+.+.. +... +... .+..|..+.|.-.+.-.-...+.|..++..-..++ . ...+..+.|.
T Consensus 1772 s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk-------~---v~~Tf~~aG~ 1841 (2740)
T TIGR00864 1772 SEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGK-------H---ACMTFPDAGT 1841 (2740)
T ss_pred eEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccc-------e---eEEecCCCeE
Confidence 56777776542 2111 1122 45678888888876433345788888754312111 0 1155678899
Q ss_pred EEEE--EEeCCeeEEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee-eeecCCCccccEE
Q psy574 166 YVCE--AENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR-SLIYPGDRVDNIQ 241 (977)
Q Consensus 166 Y~C~--a~n~~g~~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~-~~~~~~~~~~~~~ 241 (977)
|+-. |.|..+....+..+.|+.+. .+.+......+..|+.++|.+.........+.|...+.. ....++ .++.
T Consensus 1842 ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~---~t~~ 1918 (2740)
T TIGR00864 1842 FAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPG---PRFS 1918 (2740)
T ss_pred EEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCC---CeEE
Confidence 9765 66888887788888898776 455666777889999999999987777778889886533 221111 1121
Q ss_pred EEEccCCceEEEEeecccCCCCeEEE-EEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC-ceeecCCCcEEEEEEEcc
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTLPLRSEARLRCQVRG 319 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~-C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~-~~~v~~g~~~~L~C~~~~ 319 (977)
.. ....|.|.. -.|.|..+.......+.|..+. .-...... ...+..|+..++.-.+..
T Consensus 1919 Hs---------------Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V----~gL~I~~~c~~~~~~g~~~tF~A~v~~ 1979 (2740)
T TIGR00864 1919 HS---------------FPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV----RGLQIPDCCAAGIATGEEKNFTANVQR 1979 (2740)
T ss_pred ee---------------cCCCCcEEEEEEEEeccceeeeeEEEEEEEec----cceEecCCcccceecCceEEEEEEEec
Confidence 11 122344431 5677887877777676665521 11111111 112678999999888877
Q ss_pred --CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEE--EEEEcCCCceEEEEEEEEECC
Q psy574 320 --EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT--CVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 320 --~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~--C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+..+.|++.-..+.....+..... +.+.. ....|.|. ..|.|..|.......+.|+.+
T Consensus 1980 g~~V~f~W~f~~~~~~g~~~~~~~G~-~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 1980 GKPVAFAWTFDLHHLHGDSLVIHMGK-DVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred CCceEEEEEeeecccCCCcceeecCC-ceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 567899876444443333222111 11111 12466654 568898898877777777654
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.013 Score=77.42 Aligned_cols=363 Identities=16% Similarity=0.180 Sum_probs=176.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE-eecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE--ecCce
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK--NVAGT 86 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~-l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~--n~~g~ 86 (977)
..+....+..|+.+.+.=....+ ....+.|-.++.. ...... ..+. . -.-...|.|....+ |..+.
T Consensus 1346 ~t~s~~~v~lG~tV~Ftatss~g-~~~sw~WDFGDG~ts~t~st-------~qNp--t-HTY~~pGtYTVTLTVtN~~gs 1414 (2740)
T TIGR00864 1346 LQAEKQFFALGDEAQFQACAEPE-FNYRYEWDFGGEEAAPLPAA-------GAEV--T-FIYNDPGCYLVTVAASNNISA 1414 (2740)
T ss_pred ecccccccccCCeEEEEEecCCC-CcEEEEEEeCCCCccccccC-------CCcc--e-EEcCCCceEEEEEEEECCCcc
Confidence 33333446678888887554222 2346777764332 100000 0000 0 11234677776654 33332
Q ss_pred eeeEeEEEEEEcCCe---EEeCCCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 87 RESTDAVLRVLVKPY---IIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 87 ~~s~~~~l~V~~~P~---~~~~p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.+....+.|..+.. |....... .+..+..+.+.=...|. ...+.|...++.....+ ........
T Consensus 1415 -~T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt-~~Sy~WdFGDGstst~q----------nptHtY~~ 1482 (2740)
T TIGR00864 1415 -ANDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR-NASYLWDFGDGGLLEGP----------EILHAFNS 1482 (2740)
T ss_pred -eeeeeEEEEecCCCcceeeecCCcccccccCcceEEeecCCCC-ceEEEEECCCCCccCcc----------ceEEEcCC
Confidence 23445667764421 21111100 12233344443222333 45788888665432211 11123456
Q ss_pred CeEEEEE--EEeCCeeEEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 163 AGEYVCE--AENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 163 ~G~Y~C~--a~n~~g~~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|.|+-. +.|..|..+....+.|..+. .+...+....+..+..+.|.-.........+.|...+...... ... .
T Consensus 1483 ~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~-~np--t 1559 (2740)
T TIGR00864 1483 PGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF-GGN--T 1559 (2740)
T ss_pred CceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc-CCC--c
Confidence 7999765 56888887777788887543 2444455556666777888754434445578898865422110 000 0
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEE-EEEEcCCCceeEEEEEEEECCCCCCCCeEEeC-----------CCceeecC
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFG-----------PANQTLPL 307 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~-C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~-----------p~~~~v~~ 307 (977)
. ..+ ....|.|+. -.+.|..|....+..+.|...... -.|... +....+..
T Consensus 1560 ~----------~yT-----Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~G--lqI~~~~~~gg~~~~~~~~~~~~~t 1622 (2740)
T TIGR00864 1560 I----------FYT-----FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEG--LQILGETAEGGGGGVQELDGCYFET 1622 (2740)
T ss_pred e----------EEe-----ecCCceEEEEEEEecCCCccceeEEEEEeecccc--eEEEeecccccCCcccccccceecc
Confidence 0 011 123566751 467788888877777777763110 111111 11123455
Q ss_pred CCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCc-eEEEeccCCCCCeE--EEEEEEcCCCceEEEEEEEEECCC
Q psy574 308 RSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGE--YTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 308 g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~-sl~I~~v~~~d~G~--Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
+..+.|.-.... ..++.|...+......... ...| ...+. ..+.|. ++..|.|..|....+..+.+.++-
T Consensus 1623 ~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~vt---~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi 1697 (2740)
T TIGR00864 1623 NHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAF--AGSGKGAKLN---PLEAGPCDIFLQAANLLGQATADCTIDFLEPA 1697 (2740)
T ss_pred CCEEEeeeccCCCCeeEEEEEEecCCCCCCccc--cccCceeEEe---cCCCceEEEEEEEeecccceeeEEEEEEEEEc
Confidence 566666654444 5578886621100000001 1111 12222 234455 456789999999888888887653
Q ss_pred CCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 383 NPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 383 ~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
.-.. ..........+.+.++.+.....+.++..|....
T Consensus 1698 ~~L~--L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864 1698 GNLM--LQASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred CceE--EeccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence 2211 0111112334444445544445556666666443
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=82.26 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=55.7
Q ss_pred cccceEEeCCCcEEEEEECCCC---CCCCeEEE---------------EeCCEEee---cCCCceEEEe-----cCcEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRG---HPEPTLVW---------------KKNGHPID---FENSKRLRLV-----DGTNLA 64 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g---~P~~~v~W---------------~k~g~~l~---~~~~~r~~~~-----~~g~L~ 64 (977)
.|..+.+..|++++|.|..... .+...|.| +++|+... ..-.+|+.+. .+.+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4667899999999999998332 24568999 33454442 1223577664 346899
Q ss_pred EcCCCCCCCeEEEEEEEecCc
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+++.+|+|.|+|.+.|..+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999998764
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=79.63 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=58.8
Q ss_pred ceEEeCCCeEEEEEEe-c----ccCceEEEEEECCeeCCCCc--eEE-eccceEEEccCccCCCeEEEEEEEeCCee---
Q psy574 108 DTTVSASSIIVFECSV-G----GDAVLTVHWKRLGSAMPEDR--MSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGK--- 176 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~----g~p~~~i~W~k~~~~l~~~~--~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--- 176 (977)
.+.+.+|.+..|.|.- . ..+.+.+.||||+.++.... +.. .....|.|.++..+|+|.|+|++.+..+.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 3567889999999973 2 23667999999999987433 222 23468999999999999999999997653
Q ss_pred -EEEEEEEEE
Q psy574 177 -ISASATLTV 185 (977)
Q Consensus 177 -~~~~~~L~V 185 (977)
+++.+.|.|
T Consensus 84 ~vtr~~~l~v 93 (95)
T cd05897 84 NITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEE
Confidence 455556654
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=78.15 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=54.3
Q ss_pred cceEEeCCCcEEEEEECCC----------CCCCCeEEEEeCCEEeecCC-----CceEEEecCcEEEEcCCCCCCCeEEE
Q psy574 13 KSQRVAAGDTALLECGPPR----------GHPEPTLVWKKNGHPIDFEN-----SKRLRLVDGTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~----------g~P~~~v~W~k~g~~l~~~~-----~~r~~~~~~g~L~I~~v~~~D~G~Y~ 77 (977)
....+.+||++.|.|..-. ......+.|+|++..+.... ..|+... +..|.|.++..+|+|.|+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~-~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE-EDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe-CCEEEEEeCChhhCeEEE
Confidence 4578999999999997411 12234899999975553322 1355554 678999999999999999
Q ss_pred EEEEecCce
Q psy574 78 CVVKNVAGT 86 (977)
Q Consensus 78 C~a~n~~g~ 86 (977)
|++.|....
T Consensus 87 C~~rN~t~C 95 (104)
T cd05896 87 CVLRNSTYC 95 (104)
T ss_pred EEECCCCcc
Confidence 999987654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-07 Score=100.90 Aligned_cols=136 Identities=24% Similarity=0.367 Sum_probs=107.7
Q ss_pred EEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCC-------------CCCceEEEEeec------CccceEEE
Q psy574 547 IELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDP-------------PASVAMLTVLHA------GEASGFLV 604 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~-------------~~~~~~~~~~~~------~~~~~~~i 604 (977)
+..+.....+.++|.|+|..- .-..+.+|.+.|++... ...|....+..+ ....-+.+
T Consensus 491 ~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l 570 (1025)
T KOG4258|consen 491 VLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLL 570 (1025)
T ss_pred eeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceeh
Confidence 456778889999999999976 34557799999986532 467887777654 12336889
Q ss_pred CCCCCCcEEEEEEEEeecc--eeC--CCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEE
Q psy574 605 TGLAHYSRYEFFLVPFFGS--VDG--KPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII 680 (977)
Q Consensus 605 ~~L~p~t~Y~~~V~a~n~~--g~g--~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~ 680 (977)
.+|+|+|.|-+.|++.... +.. ..|+...++|..+.|+ ||..+-....+++.|.|+|+|| ..+||.|+.|.|.
T Consensus 571 ~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP--~~pNG~lt~Ylv~ 647 (1025)
T KOG4258|consen 571 DGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPP--SQPNGNLTHYLVV 647 (1025)
T ss_pred hcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCC--CCCCCceeEEEEE
Confidence 9999999999999998432 221 3577888999999998 8877776666777899999999 9999999999999
Q ss_pred EEecC
Q psy574 681 VGGGN 685 (977)
Q Consensus 681 ~~~~~ 685 (977)
|...+
T Consensus 648 wer~~ 652 (1025)
T KOG4258|consen 648 WERQA 652 (1025)
T ss_pred EEecc
Confidence 98754
|
|
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=76.18 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec-CCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS-ASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.+++.|+|+++. ..++.+..|.|.+...+...+...... .+...+.+.+|.|++.|.|+|+|.+..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCC--CCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 56778887777899999999984 444778899999987542233222222 467889999999999999999999999
Q ss_pred CcCCCCCceEE
Q psy574 723 GTGPYSRPALL 733 (977)
Q Consensus 723 G~g~~S~~~~~ 733 (977)
|.|.++..+.+
T Consensus 81 ~~~~~s~~~~~ 91 (93)
T cd00063 81 GESPPSESVTV 91 (93)
T ss_pred ccCCCcccccc
Confidence 99888875554
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=91.14 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=106.6
Q ss_pred eeEeCCCeEEEEEEecCCCccceE----EEEEEec--C-C--CCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 552 VKPMTSTSVKLTWEILNTDYIEGV----YIYSRGL--D-P--PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p~~~~i~~Y----~v~y~~~--~-~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
......+++.+.|..--+..+.-. +..|+.. . . ...|+.... ......+.+++++|+.-|+|+|.|.|.
T Consensus 154 y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~--t~~e~~~~~t~~rPgRwyefrvaavn~ 231 (516)
T KOG4802|consen 154 YFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEK--TMEENTYIFTDMRPGRWYEFRVAAVNA 231 (516)
T ss_pred hhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeee--cCCCceeeeeecCcceeEEEEEeeeec
Confidence 445566778888987622222111 1122111 1 1 344554444 345568999999999999999999998
Q ss_pred cee---CCCCCceEEeccCCCCCCCCceeEEEEecCc---EEEEEeeCCCCCCCCeeeeEEEEEEEecC----CcceEEE
Q psy574 623 SVD---GKPSNLRAVRTLECEPSGVPQLTDPVLLNAT---SVLLKWKPPPVGTHNGVIRTYQIIVGGGN----NSALINM 692 (977)
Q Consensus 623 ~g~---g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~---sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~----~~~~~~~ 692 (977)
.|. +.+|......-...+|+ +|.++++.....+ ...|.|.|++ .+-+|..|+|.|...- .....+.
T Consensus 232 ~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~---sdlPv~~Yki~Ws~~v~s~k~~m~tks 307 (516)
T KOG4802|consen 232 YGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSK---SDLPVEKYKITWSLYVNSAKASMITKS 307 (516)
T ss_pred ccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCC---CCCcceeeEEEeehhhhhhhhhccccc
Confidence 765 44555555555555665 7888887654332 3567777764 4567899999986531 1111111
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 726 (977)
...-++..+.|++|.|+..|.|+|+|.+..|.+.
T Consensus 308 ~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 308 SYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred ceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 1111223444999999999999999999988764
|
|
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-07 Score=76.81 Aligned_cols=59 Identities=31% Similarity=0.619 Sum_probs=44.6
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-Cc----EEEEcCCCCCCCeEEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GT----NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g----~L~I~~v~~~D~G~Y~C~a 80 (977)
|++++|.|.+..+.+...+.|+|++..+.... ...... .. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS--TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE--EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc--eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 89999999885567788999999988763222 222221 22 2999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-06 Score=96.64 Aligned_cols=135 Identities=21% Similarity=0.339 Sum_probs=104.4
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCce----EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA----SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~----~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
+.+.+|.++.+...++|...|.|....- ...+.+.|.. ....|++...++....+.+++.|+|
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt-------------~qa~ps~V~~~r~~~~~~~sitlsW 463 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITT-------------NQAAPSPVSVLRQVSRTSDSITLSW 463 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeec-------------cccCCCccceEEEeeeccCceEEec
Confidence 3468999999999999999999966432 2233333332 2255777788899999999999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
..|.. .++.+..|.|+|+...... ..+..+ ....+..++.+|+|++.|.|+|||....|.|..|....
T Consensus 464 ~~p~~-png~ildYEvky~ek~~~e---------~~~~~~--~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~ 531 (996)
T KOG0196|consen 464 SEPDQ-PNGVILDYEVKYYEKDEDE---------RSYSTL--KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE 531 (996)
T ss_pred CCCCC-CCCcceeEEEEEeeccccc---------cceeEE--ecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee
Confidence 99988 6677999999999876432 133333 45667889999999999999999999999999998776
Q ss_pred eEEe
Q psy574 499 EIVL 502 (977)
Q Consensus 499 ~~~~ 502 (977)
+-+.
T Consensus 532 fqT~ 535 (996)
T KOG0196|consen 532 FQTL 535 (996)
T ss_pred eeec
Confidence 6555
|
|
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=75.56 Aligned_cols=70 Identities=17% Similarity=0.399 Sum_probs=53.6
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee------cCCCceEEEec-Cc---EEEEcCCCCCCCeEEEEEEEe
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVD-GT---NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------~~~~~r~~~~~-~g---~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+++++.+|++++|.|.+ .+.....+.|++-+..+- ...+.|+.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 46899999999999999 666667788887654331 12456777654 23 599999999999999999975
Q ss_pred c
Q psy574 83 V 83 (977)
Q Consensus 83 ~ 83 (977)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-07 Score=78.60 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=51.2
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCee-CC--------------CCceEEe------ccceEEEccCccCCCeEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MP--------------EDRMSVL------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-l~--------------~~~~~~~------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+.+.+|++|+|.|.+.+.+.+.|.|++++.. +. .+|+... .+.+|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 3567899999999999889999999977632 11 1122111 1236999999999999999
Q ss_pred EEEEeCCee
Q psy574 168 CEAENAVGK 176 (977)
Q Consensus 168 C~a~n~~g~ 176 (977)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999887654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=76.21 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=58.4
Q ss_pred ceEEeCCCeEEEEEEe-c----------ccCceEEEEEECCeeCCCCc------eEEe-ccceEEEccCccCCCeEEEEE
Q psy574 108 DTTVSASSIIVFECSV-G----------GDAVLTVHWKRLGSAMPEDR------MSVL-PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~----------g~p~~~i~W~k~~~~l~~~~------~~~~-~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
...+.+|+.+.|.|.. . ......+.|+|++..+.... .++. .+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 3468899999999986 1 12234799999975443211 1222 678999999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
+.|......-.+.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998877777777665
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.1e-07 Score=80.37 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=56.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE---E---ee------cCCCceEEEec-----CcEEEEcCCCCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH---P---ID------FENSKRLRLVD-----GTNLAIQDSRKT 71 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~---~---l~------~~~~~r~~~~~-----~g~L~I~~v~~~ 71 (977)
...|..+.+.+|++|+|.|.+ .+.+...+.|+|... . +. ....+|+.+.. ..+|.|.+++.+
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred eecCCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 456888999999999999998 555788999998431 1 11 02346776653 236999999999
Q ss_pred CCeEEEEEEEecC
Q psy574 72 DDGRYQCVVKNVA 84 (977)
Q Consensus 72 D~G~Y~C~a~n~~ 84 (977)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998653
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-07 Score=73.43 Aligned_cols=57 Identities=35% Similarity=0.637 Sum_probs=45.9
Q ss_pred CCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe--ccc----eEEEccCccCCCeEEEEEE
Q psy574 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL--PSR----SLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 114 G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~--~~~----~L~I~~v~~~D~G~Y~C~a 170 (977)
|++++|.|.+ .+.+...+.|+|++........... ... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7788899999999887765433222 112 2999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.5e-07 Score=75.94 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=57.6
Q ss_pred CCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 203 GRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 203 G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|+++.|.|.+.+.+. ..+.|.+.+............+..........+.|.|.+++.+|+|.|+ |.|.|..|.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~-C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYT-CTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEE-EEEeecceEeccc
Confidence 788999999987654 4779998776432111001101111111123459999999999999999 9999999988888
Q ss_pred EEEEEE
Q psy574 281 ASLTVS 286 (977)
Q Consensus 281 ~~l~V~ 286 (977)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888875
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=73.20 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=52.1
Q ss_pred EEEEEEe-cccCceEEEEEECCeeCCCCce------EEeccceEEEccCccCCCeEEEEEEEeCCee---EEEEEEEE
Q psy574 117 IVFECSV-GGDAVLTVHWKRLGSAMPEDRM------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK---ISASATLT 184 (977)
Q Consensus 117 v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L~ 184 (977)
++|.|.. .|.|+++|+|||++.+|..... .+...++|.|.....+|.+.|+|+|.|..+. .+....|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 7899998 7789999999999999864211 1123357999999999999999999998764 44444444
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-06 Score=76.59 Aligned_cols=120 Identities=13% Similarity=0.241 Sum_probs=77.5
Q ss_pred ceEEeCCCeEEEEEEec---ccCceEEEEEECCe---e--C-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 108 DTTVSASSIIVFECSVG---GDAVLTVHWKRLGS---A--M-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~---g~p~~~i~W~k~~~---~--l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
.+....|+.+.|.|.-. ..+...|.|+|.+. . + ..++..+. .+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 44677899999999863 22556899999532 1 0 01223331 334799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCe
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~ 227 (977)
|.|+|...-........-.|++..|-.+.+.........-...++.|...|+|.|.+.|.-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999865544433334444433333322211111225567899998899999999998754
|
|
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=76.35 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=59.8
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCee-----C---------------CCCceEEeccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-----M---------------PEDRMSVLPSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-----l---------------~~~~~~~~~~~~L~I~~v~~~D~G 164 (977)
.+.+..+.+|+++.|.|.........+.|+|.... + ..+|..+..+++|.|.+++.+|+|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 34455788999999999764344458999996321 1 235666678899999999999999
Q ss_pred EEEEEEEeCCe-eEEEEEEEEE
Q psy574 165 EYVCEAENAVG-KISASATLTV 185 (977)
Q Consensus 165 ~Y~C~a~n~~g-~~~~~~~L~V 185 (977)
.|+|.+.+... .....+.|.|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEEC
Confidence 99999998773 4555555543
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=72.83 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=57.0
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeC-CeeEEEEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENA-VGKISASATLT 184 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-~g~~~~~~~L~ 184 (977)
.+.++.+|+++.|.|...+. ...+.|++++..+..+ ++.. ....|.|.+++.+|+|.|+|.+.-. ....-....|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~-~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~ 81 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV-GTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLN 81 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE-eCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEE
Confidence 45688999999999999754 5699999999988653 4333 4555789999999999999998732 22233444444
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 82 v 82 (85)
T cd05872 82 V 82 (85)
T ss_pred E
Confidence 4
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=73.70 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=46.0
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
.+.|.|.+..+.|.+.|.|+|||+.+.... .......+ +.|.|.....+|.|.|+|+|.|...
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 368999995558999999999999884321 11111222 2588888888899999999998763
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=76.07 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=52.5
Q ss_pred CCCcEEEEEECCCCCC-----------CCeEEEEeC--CE---Ee---------ecCCCceEEEec------CcEEEEcC
Q psy574 19 AGDTALLECGPPRGHP-----------EPTLVWKKN--GH---PI---------DFENSKRLRLVD------GTNLAIQD 67 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P-----------~~~v~W~k~--g~---~l---------~~~~~~r~~~~~------~g~L~I~~ 67 (977)
.|++|+|.|......+ .+.|.|+|- |+ .+ ..+..+|+++.. +.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999998732221 468999983 21 11 112235777643 46899999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
++.+|+|+|+|.+.++.. .++..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIE-DNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence 999999999999986533 23455555554
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-06 Score=72.23 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=64.9
Q ss_pred CceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCC---ceEEec------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPED---RMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~---~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+.|.+|+++.|.|.+.++|.|+ +.|.+++..+... ...... ...|.+.++..+|.|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 355789999999999999999998 9999998765321 111111 257999999999999999999999988
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
.+..+.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888774
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=77.26 Aligned_cols=73 Identities=15% Similarity=0.328 Sum_probs=54.7
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEee--------------cCCCceEEEecC----cEEEEcCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID--------------FENSKRLRLVDG----TNLAIQDS 68 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l~--------------~~~~~r~~~~~~----g~L~I~~v 68 (977)
.+.|..+.+.+|++|+|.|.+ .+ +...+.|+|.. +.+. .....|+....+ .+|.|.++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred EECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 467888999999999999998 45 67889999943 1110 111356655432 36999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+++|+|.|.|.+.+.
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999999764
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=78.10 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=55.8
Q ss_pred cccceEEeCCCcEEEEEECCCCCC---CCeEEEEeC----CEE--ee-------c----CCCceEEEe-----cCcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKN----GHP--ID-------F----ENSKRLRLV-----DGTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~----g~~--l~-------~----~~~~r~~~~-----~~g~L~I 65 (977)
.|..+.+.+|++++|.|......+ ...|.|++. +.. +. . .-..|+.+. .+.+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 467899999999999998732222 246999751 221 20 0 112344433 2457999
Q ss_pred cCCCCCCCeEEEEEEEecCce-eeeEeEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT-RESTDAVLR 95 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~-~~s~~~~l~ 95 (977)
.+++.+|+|.|.|.+.|..+. .....+.|+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999999987553 223444554
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=77.10 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCC-----EEee-------cCCCceEEEecC---cEEEEcCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG-----HPID-------FENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g-----~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
+.+.|..+.+.+|++|+|.|.+ .+.. ...+.|+|.. +.|- .....|+....+ ..|.|.+++.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 5677888999999999999998 4444 5689999832 1111 112246665432 35999999999
Q ss_pred CCeEEEEEEEec
Q psy574 72 DDGRYQCVVKNV 83 (977)
Q Consensus 72 D~G~Y~C~a~n~ 83 (977)
|+|.|.|.+.+.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.6e-06 Score=70.71 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
+++.+.+|++++|.|.+.+.....+.|++.+..+...... ...|+..........+|+|.+++.+|.|.|. |.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~-Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYF-CQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEE-EEEEc
Confidence 5678899999999999998877889999888555422211 3567887764445578999999999999999 98865
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=72.68 Aligned_cols=75 Identities=25% Similarity=0.634 Sum_probs=52.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+|.+.+.+.......++ ++|.|.+..+.|.+.+.|+ +.... .....+.....++.|.|.++..+|.|.|+|+|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46777778777666666 9999999444448899999 22221 1111223333467899999999999999999986
|
... |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.7e-06 Score=74.61 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=53.5
Q ss_pred CCCcEEEEEECCCC-----CCCCeEEEEeCCE------E--ee--------cCCCceEEEec----CcEEEEcCCCCCCC
Q psy574 19 AGDTALLECGPPRG-----HPEPTLVWKKNGH------P--ID--------FENSKRLRLVD----GTNLAIQDSRKTDD 73 (977)
Q Consensus 19 ~G~~v~L~C~~~~g-----~P~~~v~W~k~g~------~--l~--------~~~~~r~~~~~----~g~L~I~~v~~~D~ 73 (977)
.|++|+|.|..... .....|.|+|... . +. ....+|+.+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999987222 2345799999531 1 10 11235666642 35799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
|.|+|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccc-eEEEEEEEEE
Confidence 9999999887664 3455666664
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00029 Score=73.68 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=79.0
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceE-EeccCC---CCCCCCceeEEEEec----CcEEEEEeeCCCCC
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA-VRTLEC---EPSGVPQLTDPVLLN----ATSVLLKWKPPPVG 668 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~-~~T~~~---~P~~~P~~v~~~~~~----~~sv~v~W~~p~~~ 668 (977)
..-..+.+.++.|+..|.+++.+.+... +....-+. ..|.+. -|. -|.+..+...+ =++++|.|.+-+ +
T Consensus 125 ~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~-LP~d~~Ik~f~~lrtC~SvTIAW~~s~-d 201 (300)
T PF10179_consen 125 EGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQ-LPDDTSIKEFNKLRTCNSVTIAWLGSP-D 201 (300)
T ss_pred cceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCC-CCCCCceeEEcCCcccceEEEEEecCC-C
Confidence 3457899999999999999998876432 22222233 334333 232 56677765443 378999999864 2
Q ss_pred CCCeeeeEEEEEEEecCCc-------------------c-e----EEEEecC-----Cc---CeEEecCCCCCceEEEEE
Q psy574 669 THNGVIRTYQIIVGGGNNS-------------------A-L----INMTVSA-----ST---PTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 669 ~~ng~i~~Y~v~~~~~~~~-------------------~-~----~~~~~~~-----~~---~~~~l~~L~p~t~Y~~~V 716 (977)
.+ ..|-|+.++.+.. . . .+..... .. ...+|.+|+||+.|.|.|
T Consensus 202 -~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV 277 (300)
T PF10179_consen 202 -RS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDV 277 (300)
T ss_pred -CC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEE
Confidence 22 3566655532100 0 0 0000111 12 344899999999999999
Q ss_pred EEEcCCCcCCCCCceEEeec
Q psy574 717 AATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 717 ~A~~~~G~g~~S~~~~~~t~ 736 (977)
.|.=..|-...=....++|.
T Consensus 278 ~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 278 YVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred EEecCCCceeecceEEEEec
Confidence 99866665544444455443
|
The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-06 Score=73.89 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=50.4
Q ss_pred CcEEEEEECCCCC--CCCeEEEEeCCE----Ee-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEEE
Q psy574 21 DTALLECGPPRGH--PEPTLVWKKNGH----PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 21 ~~v~L~C~~~~g~--P~~~v~W~k~g~----~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~ 79 (977)
++|+|.|...... ....|.|+|... .+ .....+|+.+.. +.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999883332 345799999542 11 112245666553 46899999999999999999
Q ss_pred EEec-CceeeeEeEEEEE
Q psy574 80 VKNV-AGTRESTDAVLRV 96 (977)
Q Consensus 80 a~n~-~g~~~s~~~~l~V 96 (977)
+... .|. ....+.|.|
T Consensus 81 v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGN-RQKVTTLTV 97 (98)
T ss_pred EEeCCCCc-EEEEEEEEe
Confidence 8753 444 345556665
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.25 E-value=8e-06 Score=73.82 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=53.4
Q ss_pred CCcEEEEEECCCCCC---------CCeEEEEeC--CEEe------------ecCCCceEEEe------cCcEEEEcCCCC
Q psy574 20 GDTALLECGPPRGHP---------EPTLVWKKN--GHPI------------DFENSKRLRLV------DGTNLAIQDSRK 70 (977)
Q Consensus 20 G~~v~L~C~~~~g~P---------~~~v~W~k~--g~~l------------~~~~~~r~~~~------~~g~L~I~~v~~ 70 (977)
|++|+|.|......+ ...|.|+|. ++.. ...-.+|+.+. .+.+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 899999998832221 367999994 2211 12234577763 235799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEc
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV 98 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~ 98 (977)
+|+|.|.|.+...... ....+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 9999999999876433 34556777653
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=73.41 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=51.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCE----Eee-----------cCCCceEEEe----cCcEEEEcCCCCCCCeEEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGH----PID-----------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~----~l~-----------~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
|++|+|.|..........|.|+|... .+. ....+|..+. .+.+|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 89999999873333334799998421 111 1113344442 2457999999999999999998
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
........+..+-|+|+
T Consensus 81 ~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EeCCCCCeeeEEEEEEC
Confidence 76543335566677763
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.4e-06 Score=70.30 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEcc--CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITS--DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~--~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
..+.|.+|+++.|.|.+.++|+|. +.|.+++..+.... ...+...... ...+.|+|..++.+|.|.|+ |.|.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~---~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YT-f~a~N 86 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTS---DHYVKSRNESNNRYVSELHLTRLKGTEGGTYT-FLVSN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccc---cceeEEeccCceEEEEEEEEeecChhhCcEEE-EEEEC
Confidence 345789999999999999999997 99999987653221 1112222111 13479999999999999999 99999
Q ss_pred CCCceeEEEEEEEE
Q psy574 273 AAGSDLARASLTVS 286 (977)
Q Consensus 273 ~~g~~~~~~~l~V~ 286 (977)
.....+.+..|.|+
T Consensus 87 ~~~~~s~tF~l~v~ 100 (101)
T cd05860 87 SDASASVTFNVYVN 100 (101)
T ss_pred CCCeEEEEEEEEEe
Confidence 99999888888775
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-06 Score=75.65 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=52.1
Q ss_pred cccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCC------EEee------------cCCCceEEEec-----CcEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNG------HPID------------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g------~~l~------------~~~~~r~~~~~-----~g~L~ 64 (977)
.|..+.+.+|++|+|.|......+ ...|.|++.. ..+. .....|+.+.. +.+|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 477899999999999998733322 2569998621 1110 01124455432 25799
Q ss_pred EcCCCCCCCeEEEEEEEecCc
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+++.+|+|.|.|.+.|...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999998754
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-06 Score=71.65 Aligned_cols=73 Identities=30% Similarity=0.464 Sum_probs=50.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEEC-CeeCCCCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~-~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.+...+.......+. ++|.|.+.+.+ .+.++|+.. ................|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 35666666555544444 99999998776 899999911 111111122233567899999999999999999987
|
... |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-06 Score=72.51 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCC-------------------CCceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMP-------------------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~-------------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
|++|+|.|.+.......|.|+|...... .+|..+..+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999998766777999999753321 134445567899999999999999999998776
Q ss_pred ee-EEEEEEEEE
Q psy574 175 GK-ISASATLTV 185 (977)
Q Consensus 175 g~-~~~~~~L~V 185 (977)
+. ....+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 43 555565543
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-06 Score=73.13 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-EeccceEEEccCccCCCeEEEEEEEeC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+|.+...|. ..|.+|++|+|.|... .+...+.|+|+|......... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 466666664 4788999999999885 567789999998865432111 113467999999999999999999886
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-06 Score=70.74 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=51.4
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCC----EEee-----------cCCCceEEEe----cCcEEEEcCCCCCCCeEEEEEEE
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNG----HPID-----------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g----~~l~-----------~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++|+|.|.........+|.|.|.. +.+. ....+|+.+. .+++|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 478999998433445689998832 2221 1224577764 25789999999999999999986
Q ss_pred ec-CceeeeEeEEEEE
Q psy574 82 NV-AGTRESTDAVLRV 96 (977)
Q Consensus 82 n~-~g~~~s~~~~l~V 96 (977)
+. .|.. ...+.|+|
T Consensus 81 tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNT-QSSTTVTV 95 (96)
T ss_pred eCCCCCe-eEEEEEEE
Confidence 54 4553 35556665
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=73.00 Aligned_cols=78 Identities=27% Similarity=0.375 Sum_probs=52.9
Q ss_pred CCCcEEEEEECCCC-----CCCCeEEEEeCC-----E-Eee----------cCCCceEEEe----cCcEEEEcCCCCCCC
Q psy574 19 AGDTALLECGPPRG-----HPEPTLVWKKNG-----H-PID----------FENSKRLRLV----DGTNLAIQDSRKTDD 73 (977)
Q Consensus 19 ~G~~v~L~C~~~~g-----~P~~~v~W~k~g-----~-~l~----------~~~~~r~~~~----~~g~L~I~~v~~~D~ 73 (977)
.|++|+|.|..... .....|.|+|.. . .+. .....|+.+. .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999997322 225689999962 1 111 1122344332 245799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
|.|+|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEE
Confidence 9999999987553 4566777775
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=76.49 Aligned_cols=90 Identities=20% Similarity=0.353 Sum_probs=61.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-----Eee------------cCCCceEEEecC-----cEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PID------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-----~l~------------~~~~~r~~~~~~-----g~L~ 64 (977)
.+...|..+.+.+|++++|.|..........+.|++... .+. ....+|+.+..+ .+|.
T Consensus 3 ~vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 3 QVTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred eEEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 345568889999999999999983134556899998321 111 111344544432 3599
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|.+++.+|+|.|.|.+...........+.|.|
T Consensus 83 i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred ECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999998874333344445554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=72.06 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCcEEEEEECCCCC--CCCeEEEEeCC--EEe---------e----cCCCceEEEec------CcEEEEcCCCCCCCeEE
Q psy574 20 GDTALLECGPPRGH--PEPTLVWKKNG--HPI---------D----FENSKRLRLVD------GTNLAIQDSRKTDDGRY 76 (977)
Q Consensus 20 G~~v~L~C~~~~g~--P~~~v~W~k~g--~~l---------~----~~~~~r~~~~~------~g~L~I~~v~~~D~G~Y 76 (977)
|++|+|.|...... -...|.|+|.. ..+ . .+..+|+.+.. +.+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999873221 12368888744 111 0 01235666532 24799999999999999
Q ss_pred EEEEEecCceeeeEeEEEEE
Q psy574 77 QCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V 96 (977)
+|.+.+..+. ....+.|+|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999987664 445556655
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=70.39 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=52.4
Q ss_pred CcEEEEEECCCCCCC---CeEEEEeC--C--EEe-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEE
Q psy574 21 DTALLECGPPRGHPE---PTLVWKKN--G--HPI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~---~~v~W~k~--g--~~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C 78 (977)
.+|+|.|......|. .+|.|.|. + +.+ .....+|+.+.. +++|.|.+++.+|+|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 468999998433332 26999983 1 111 112346777653 4789999999999999999
Q ss_pred EEEe-cCceeeeEeEEEEEE
Q psy574 79 VVKN-VAGTRESTDAVLRVL 97 (977)
Q Consensus 79 ~a~n-~~g~~~s~~~~l~V~ 97 (977)
.+.+ ..|. .+..+.|+|+
T Consensus 81 ~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred EEEeCCCCC-eEEEEEEEEC
Confidence 9999 4564 4566777763
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.9e-06 Score=74.17 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=55.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEECCee---------------CCCCceEEe-----ccceEEEccCccCCC
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVL-----PSRSLQLSDVRLEDA 163 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------------l~~~~~~~~-----~~~~L~I~~v~~~D~ 163 (977)
..|..+.+.+|++++|.|.+.+.+...+.|+|.... ...+|+.+. ....|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 456778899999999999998777889999986321 123455443 235799999999999
Q ss_pred eEEEEEEEeCC
Q psy574 164 GEYVCEAENAV 174 (977)
Q Consensus 164 G~Y~C~a~n~~ 174 (977)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998653
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=73.90 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=55.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEec-----CcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVD-----GTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~-----~g~L~I~~v~~ 70 (977)
+.+.|..+.+.+|++|+|.|..........+.|+|. +.. +- ...++|+.+.. +-+|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 467788999999999999998843335578999982 221 10 12346777652 23699999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.3e-06 Score=74.24 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=51.0
Q ss_pred eEEeCCCcEEEEEECCCCC-CCCeEEEEeCCE-----Eee----------cCCCceEEEecC-----cEEEEcCCCCCCC
Q psy574 15 QRVAAGDTALLECGPPRGH-PEPTLVWKKNGH-----PID----------FENSKRLRLVDG-----TNLAIQDSRKTDD 73 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~-----~l~----------~~~~~r~~~~~~-----g~L~I~~v~~~D~ 73 (977)
+.+.+|++|+|.|.+ ... +...+.|+|... .+. .....|+.+..+ -+|.|.+++.+|+
T Consensus 1 ~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 1 LSVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred CeecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 368899999999998 443 677899998432 110 123456665432 2699999999999
Q ss_pred eEEEEEEEecCc
Q psy574 74 GRYQCVVKNVAG 85 (977)
Q Consensus 74 G~Y~C~a~n~~g 85 (977)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999987654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=75.00 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=62.5
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee----------cCCCceEEE-e---cCcEEEEcCCCCCCCeEEEEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------FENSKRLRL-V---DGTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----------~~~~~r~~~-~---~~g~L~I~~v~~~D~G~Y~C~ 79 (977)
.+.|.+|++|+|.|....+...++|.|+|..+.+. .+-.+|+.+ . .+..|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 57899999999999984455678899999643321 222346664 2 246799999999999999999
Q ss_pred EEecC-ceeeeEeEEEEEEcC
Q psy574 80 VKNVA-GTRESTDAVLRVLVK 99 (977)
Q Consensus 80 a~n~~-g~~~s~~~~l~V~~~ 99 (977)
...-. |..++..+-|+|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 86543 435667778888754
|
|
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=68.81 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=50.0
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEE--ec-------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEE
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV--LP-------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLT 184 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~--~~-------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~ 184 (977)
+.|.|.+.| .|.+.|+|+|++..+....... .. ...|.|.....+|.|.|+|.|.|.... ..+++.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999966 6888999999998876532211 11 135778877788899999999987643 55555554
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 82 v 82 (82)
T cd05759 82 V 82 (82)
T ss_pred C
Confidence 3
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=70.33 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=49.6
Q ss_pred CcEEEEEECCCCCC--CCeEEEEeC--CE---Eee-----------cCCCceEEEec-----CcEEEEcCCCCCCCeEEE
Q psy574 21 DTALLECGPPRGHP--EPTLVWKKN--GH---PID-----------FENSKRLRLVD-----GTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 21 ~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l~-----------~~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~ 77 (977)
.+|+|.|......+ ...|.|+|. +. .+. .+..+|..+.. +++|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 47899998832221 348999993 21 111 11225666652 568999999999999999
Q ss_pred EEEEe-cCceeeeEeEEEEE
Q psy574 78 CVVKN-VAGTRESTDAVLRV 96 (977)
Q Consensus 78 C~a~n-~~g~~~s~~~~l~V 96 (977)
|.+.+ ..|.. ...+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99987 44543 45566665
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=71.20 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=53.5
Q ss_pred CCcEEEEEECCC------CCCCCeEEEEeC-----CEE------------eecCCCceEEEec------CcEEEEcCCCC
Q psy574 20 GDTALLECGPPR------GHPEPTLVWKKN-----GHP------------IDFENSKRLRLVD------GTNLAIQDSRK 70 (977)
Q Consensus 20 G~~v~L~C~~~~------g~P~~~v~W~k~-----g~~------------l~~~~~~r~~~~~------~g~L~I~~v~~ 70 (977)
|+.|+|.|.... ....+.|.|+|. .+. ...+..+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 789999998521 112478999984 111 1134457888754 35799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+|+|.|+|.+.... ..+...+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 99999999998854 334456677765
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.4e-06 Score=71.04 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=52.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC-CceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN-SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+|.+.+.| ...|.+|++|+|.|..+. +...+.|+|+|....... .....-.....+.|.+++.+|+|.|+|....
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 46677777 466899999999998733 456899999887642110 0000001123689999999999999999753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=72.28 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=53.2
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-----------------CCCceEEe----ccceEEEccCc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-----------------PEDRMSVL----PSRSLQLSDVR 159 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-----------------~~~~~~~~----~~~~L~I~~v~ 159 (977)
...|....+.+|++++|.|.+.+ +...+.|||... .+ ..+++... ....|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 35677889999999999999977 677899999642 11 12344332 23479999999
Q ss_pred cCCCeEEEEEEEeC
Q psy574 160 LEDAGEYVCEAENA 173 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~ 173 (977)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999864
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=73.83 Aligned_cols=73 Identities=16% Similarity=0.340 Sum_probs=54.4
Q ss_pred eecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeC--CEE----e--e---------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKN--GHP----I--D---------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~--g~~----l--~---------~~~~~r~~~~~~-----g~L~ 64 (977)
.+.|..+.+.+|++|+|.|.+ .+ .+.+.+.|+|. |.. + . .....|+.+..+ ..|.
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 80 (116)
T cd04982 2 EQPQLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT 80 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence 456888999999999999998 44 57788999994 211 1 0 112456766532 3599
Q ss_pred EcCCCCCCCeEEEEEEEe
Q psy574 65 IQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n 82 (977)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 81 IQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEECCHHHCEEEEEEEec
Confidence 999999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=67.57 Aligned_cols=85 Identities=27% Similarity=0.341 Sum_probs=65.3
Q ss_pred EEEEeeEeCCCeEEEEEEecCC--CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMTSTSVKLTWEILNT--DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~--~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.++.+......++.|+|+++.. ..+.+|.|+|+... ...|....... .....+.|.+|.|++.|.|+|+|.+..+.
T Consensus 5 ~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~-~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~ 82 (93)
T cd00063 5 TNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKG-SGDWKEVEVTP-GSETSYTLTGLKPGTEYEFRVRAVNGGGE 82 (93)
T ss_pred CCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCC-CCCCEEeeccC-CcccEEEEccccCCCEEEEEEEEECCCcc
Confidence 3467777889999999999832 56789999999875 44565544322 36688999999999999999999998787
Q ss_pred CCCCCceEE
Q psy574 626 GKPSNLRAV 634 (977)
Q Consensus 626 g~~s~~~~~ 634 (977)
|.++....+
T Consensus 83 ~~~s~~~~~ 91 (93)
T cd00063 83 SPPSESVTV 91 (93)
T ss_pred CCCcccccc
Confidence 766654443
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-05 Score=66.96 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=47.6
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCCE----Ee-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEEEEE
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g~----~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
+.++|.|..+......+|.|.|-.. .+ .....+|+.+.. +++|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 5799999985444567899998321 12 122246777653 5789999999999999999997
Q ss_pred ec-Cce
Q psy574 82 NV-AGT 86 (977)
Q Consensus 82 n~-~g~ 86 (977)
.. .|.
T Consensus 81 t~P~g~ 86 (96)
T cd05889 81 TYPQGS 86 (96)
T ss_pred eCCCCC
Confidence 65 354
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=69.59 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=51.3
Q ss_pred CCeEEEEEEeccc---CceEEEEEECCee-----------CC-------CCceEEe------ccceEEEccCccCCCeEE
Q psy574 114 SSIIVFECSVGGD---AVLTVHWKRLGSA-----------MP-------EDRMSVL------PSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 114 G~~v~l~C~v~g~---p~~~i~W~k~~~~-----------l~-------~~~~~~~------~~~~L~I~~v~~~D~G~Y 166 (977)
|++++|.|..... ....+.|+|.... .. .+|..+. .+.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999998422 2346888886421 11 1244332 235799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy574 167 VCEAENAVGKISASATLTV 185 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V 185 (977)
+|.+.+..+..++.+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777788776
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=70.11 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=47.3
Q ss_pred EEeCCCcEEEEEECCCCC--CCCeEEEEeCC---EE--ee-------cCCCceEEEecC---cEEEEcCCCCCCCeEEEE
Q psy574 16 RVAAGDTALLECGPPRGH--PEPTLVWKKNG---HP--ID-------FENSKRLRLVDG---TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g---~~--l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C 78 (977)
.+.+|++|+|.|.+ .+. ....+.|+|.. .+ |- .....|+....+ ..|.|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 57899999999998 443 55679999832 11 11 112346665533 359999999999999999
Q ss_pred EEEe
Q psy574 79 VVKN 82 (977)
Q Consensus 79 ~a~n 82 (977)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9864
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.8e-05 Score=69.04 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=55.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCe--EEEEeCCEEeecCCCceE---EEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPT--LVWKKNGHPIDFENSKRL---RLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~--v~W~k~g~~l~~~~~~r~---~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+.+.+.+....+.+|+.++|.|.+..+.|.+. |.|+|+++.+........ ......+|.+.--+.+|...|+|+|
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence 45667777778899999999999988899987 799999999943211000 0111235776544444444999999
Q ss_pred EecCc
Q psy574 81 KNVAG 85 (977)
Q Consensus 81 ~n~~g 85 (977)
.+..+
T Consensus 82 ~l~l~ 86 (100)
T cd05755 82 ELDLR 86 (100)
T ss_pred EeccC
Confidence 98654
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.7e-05 Score=69.05 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=50.5
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-----Ee------ecCCCceEEEecC-----cEEEEcCCCCCCCeEEEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PI------DFENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-----~l------~~~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C 78 (977)
+.+.+|++|+|.|..........+.|+|... .| .....+|+.+..+ -+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 5789999999999884334667899998531 11 0123456666422 269999999999999999
Q ss_pred EEEec
Q psy574 79 VVKNV 83 (977)
Q Consensus 79 ~a~n~ 83 (977)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98765
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-05 Score=63.54 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=50.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-----CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+.|.|....+.|.+.|.|+|+++++...... ..... ...|.|..-+.+|...|+|+|.|..-........|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899999899999999999999999532110 11111 13578866666666699999998763333444566654
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.6e-05 Score=67.58 Aligned_cols=72 Identities=33% Similarity=0.652 Sum_probs=52.5
Q ss_pred CeEEEEEEecccC---ceEEEEEECCee---------------CC---CCceEEe----ccceEEEccCccCCCeEEEEE
Q psy574 115 SIIVFECSVGGDA---VLTVHWKRLGSA---------------MP---EDRMSVL----PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 115 ~~v~l~C~v~g~p---~~~i~W~k~~~~---------------l~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
++|+|.|.....+ ...|.|+|.... .. .+|..+. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999986543 457999996531 00 1233332 356899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEEe
Q psy574 170 AEN-AVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n-~~g~~~~~~~L~V~ 186 (977)
+.. ..|..++.+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 875 66778888888873
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-05 Score=63.36 Aligned_cols=77 Identities=29% Similarity=0.408 Sum_probs=53.0
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
+|.++.+...+.+++.|+|++|. ..++ .+|.+.|..... ..............+.+.+|+|++.|.|+|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPP--DDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCC--CCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence 34557777777779999999774 2222 567776665331 1233333333367899999999999999999999
Q ss_pred CCCc
Q psy574 721 RAGT 724 (977)
Q Consensus 721 ~~G~ 724 (977)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 7664
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.5e-07 Score=73.22 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=11.9
Q ss_pred CCCCceeeccccccccCCCCC
Q psy574 815 AGPGLLATPISLKAASGLPHP 835 (977)
Q Consensus 815 ~g~~~~~~p~~~~~~~~~~~~ 835 (977)
.|.++|+||++||||++|+|.
T Consensus 48 ~~~ktYIDP~TYEDP~qAV~e 68 (75)
T PF14575_consen 48 PGVKTYIDPHTYEDPNQAVRE 68 (75)
T ss_dssp --------GGGSSSHHHHHHH
T ss_pred CCceeecCcccccCHHHHHHH
Confidence 357899999999999999875
|
... |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.1e-05 Score=68.40 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=60.6
Q ss_pred eCCeEEEEEEEecCC------CCeEEEEEcCe------eeeecC-------CCccccEEEEEccCCceEEEEeecccCCC
Q psy574 202 VGRDAVFLCGIEGSP------PPSTFWMLEGN------RSLIYP-------GDRVDNIQAEITSDGMNLLKIQNVSRTAA 262 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------~~~i~W~~~g~------~~~~~~-------~~~~~~~~~~~~~~g~s~L~I~~v~~~d~ 262 (977)
.|++++|.|.....| ...|.|+|... .+.... ....+|+.+.....+...|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34699999642 111111 11234565543323456899999999999
Q ss_pred CeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 263 PLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|. |.+.+..+.....+.|.|..
T Consensus 81 G~Y~-C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYR-CEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEE-EEEEecccceEEEEEEEEEE
Confidence 9999 99999888888888888865
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=68.01 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=58.7
Q ss_pred eCCeEEEEEEEecCC------CCeEEEEEcC-----e-eeeecCCC-------ccccEEEEEccCCceEEEEeecccCCC
Q psy574 202 VGRDAVFLCGIEGSP------PPSTFWMLEG-----N-RSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTAA 262 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------~~~i~W~~~g-----~-~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d~ 262 (977)
.|++++|.|.....+ ...|.|+|.. . .+...... ...|+.......+...|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4589999972 1 11111111 112232222234567999999999999
Q ss_pred CeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 263 PLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|. |.+.+..+.....+.|.|.+
T Consensus 81 G~Y~-C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYR-CEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEE-EEEEcCCCceEEEEEEEEEE
Confidence 9999 99999877778888888865
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=68.36 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=54.6
Q ss_pred eCCCeEEEEEEecc-cCceEEEEEECCeeCC--------------C----CceEEec-cceEEEccCccCCCeEEEEEEE
Q psy574 112 SASSIIVFECSVGG-DAVLTVHWKRLGSAMP--------------E----DRMSVLP-SRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 112 ~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~--------------~----~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..|++|+|.|.... .....+.|+|....+. . +|+.+.. +.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998854 5566899998643211 0 1233323 4789999999999999999999
Q ss_pred eCCee-EEEEEEEEE
Q psy574 172 NAVGK-ISASATLTV 185 (977)
Q Consensus 172 n~~g~-~~~~~~L~V 185 (977)
+..|. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 87665 567777776
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.5e-05 Score=66.69 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=52.7
Q ss_pred CCcEEEEEECCC----------CCCCCeEEEEeC-----CE-----Ee----------ecCCCceEEEec------CcEE
Q psy574 20 GDTALLECGPPR----------GHPEPTLVWKKN-----GH-----PI----------DFENSKRLRLVD------GTNL 63 (977)
Q Consensus 20 G~~v~L~C~~~~----------g~P~~~v~W~k~-----g~-----~l----------~~~~~~r~~~~~------~g~L 63 (977)
|++++|.|.... ....+.|.|+|- |+ .+ ..+..+|..+.. +.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 789999998721 112358999873 11 11 123456777642 4689
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
.|.+++.+|+|.|+|.+.+.... ....+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 99999999999999999887543 3455667665
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.1e-06 Score=95.50 Aligned_cols=180 Identities=26% Similarity=0.422 Sum_probs=120.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--------CcEEEEcCCCCCCCe-
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--------GTNLAIQDSRKTDDG- 74 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--------~g~L~I~~v~~~D~G- 74 (977)
+-+.|..+|.+..+..|.++.|.|.+ +|.+++..+-++.-+.......+.-.+ .-.+.|...+.++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a---~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~ 99 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKA---NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGG 99 (909)
T ss_pred CcceeeecCCccceecCCCccceecC---CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccC
Confidence 34778999999999999999999976 566666655555444221111111111 112344444433332
Q ss_pred --EEE--EEEEecCceeeeEeEEEEEE-cCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEE
Q psy574 75 --RYQ--CVVKNVAGTRESTDAVLRVL-VKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSV 147 (977)
Q Consensus 75 --~Y~--C~a~n~~g~~~s~~~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~ 147 (977)
.|. |+|....|...++.+.+.+. ..-.|...|..+.|..+..+.+.|.. .+.|...+.|+|++..+... +...
T Consensus 100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~ 179 (909)
T KOG1480|consen 100 PEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR 179 (909)
T ss_pred ccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh
Confidence 555 45655556555544433332 23456777888899999999999997 78899999999999887653 3334
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
..++.|.|..+...|.|+|+|+|.|.++. ....+.+.|.
T Consensus 180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 180 ASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 47789999999999999999999998775 3334444443
|
|
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=5e-05 Score=68.39 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=52.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCe--e---C----------CCCceEEe---ccceEEEccCccCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGS--A---M----------PEDRMSVL---PSRSLQLSDVRLED 162 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~--~---l----------~~~~~~~~---~~~~L~I~~v~~~D 162 (977)
+...|....+.+|++++|.|.+.+.. ...+.|+|... . + ...++... ....|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 44567778899999999999997654 56799998631 1 0 01234332 22469999999999
Q ss_pred CeEEEEEEEeC
Q psy574 163 AGEYVCEAENA 173 (977)
Q Consensus 163 ~G~Y~C~a~n~ 173 (977)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998654
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=65.83 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=59.3
Q ss_pred eCCeEEEEEEEecCC------------CCeEEEEEcCe---eeee-c-------CCCccccEEEEEc--cCCceEEEEee
Q psy574 202 VGRDAVFLCGIEGSP------------PPSTFWMLEGN---RSLI-Y-------PGDRVDNIQAEIT--SDGMNLLKIQN 256 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------------~~~i~W~~~g~---~~~~-~-------~~~~~~~~~~~~~--~~g~s~L~I~~ 256 (977)
.|++++|.|...... .+.|.|+|... +..+ . .....+|+++... ..+...|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986532 35899998521 1111 1 1122346666541 23567999999
Q ss_pred cccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 257 VSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
++.+|+|.|. |.+.+..........|.|+.
T Consensus 81 l~~sDsG~Y~-C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYR-CEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEE-EEEecCCCCceeEEEEEEEe
Confidence 9999999999 99998777777777777764
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.1e-05 Score=63.69 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=43.0
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-c------EEEEcCCCCCCCeEEEEEEEecC
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-T------NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-g------~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++|.|.+..++|.+.|.|+|||+.+.... .......+ + .|.|.....+|...|+|+|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 68999997778999999999999884322 12222222 2 35554555666779999999875
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=65.43 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEc---------------CeeeeecCCCccccEEEEEcc-CCceEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE---------------GNRSLIYPGDRVDNIQAEITS-DGMNLLK 253 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~---------------g~~~~~~~~~~~~~~~~~~~~-~g~s~L~ 253 (977)
.+..+.+..|++++|.|...... ...|.|.+. |...........+|+...... .+..+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 35667889999999999996642 347999442 221110011223455544322 2446999
Q ss_pred EeecccCCCCeEEEEEEEcCCCce
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|.+++.+|.|.|+ |.+.|.-+..
T Consensus 84 I~nv~~sD~G~Y~-C~v~n~p~~~ 106 (116)
T cd05879 84 IHNLDYTDNGTFT-CDVKNPPDIV 106 (116)
T ss_pred EccCCcccCEEEE-EEEEcCCCcC
Confidence 9999999999999 9999876643
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.3e-05 Score=67.65 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=49.7
Q ss_pred EEeCCCeEEEEEEeccc-CceEEEEEECCee-----C-------------CCCceEEe-----ccceEEEccCccCCCeE
Q psy574 110 TVSASSIIVFECSVGGD-AVLTVHWKRLGSA-----M-------------PEDRMSVL-----PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~-----l-------------~~~~~~~~-----~~~~L~I~~v~~~D~G~ 165 (977)
.+.+|++++|.|.+.+. +...+.|+|.... + ..+|+.+. .+.+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999765 6778999996431 0 12333333 23489999999999999
Q ss_pred EEEEEEeCCe
Q psy574 166 YVCEAENAVG 175 (977)
Q Consensus 166 Y~C~a~n~~g 175 (977)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=67.92 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=50.9
Q ss_pred cccceEEeCCCcEEEEEECCCCC-----CCCeEEEEeCCE------Eee---------cCCCceEEEec-----CcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH-----PEPTLVWKKNGH------PID---------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~-----P~~~v~W~k~g~------~l~---------~~~~~r~~~~~-----~g~L~I 65 (977)
.|..+.+.+|++|+|.|...... ....+.|+|... .+. ....+|+.+.. +.+|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 57789999999999999762121 135689998421 110 11235766631 246999
Q ss_pred cCCCCCCCeEEEEEEEec
Q psy574 66 QDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~ 83 (977)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998754
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.5e-05 Score=68.55 Aligned_cols=69 Identities=20% Similarity=0.421 Sum_probs=51.8
Q ss_pred eCCCceEEeCCCeEEEEEEecc--cCceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+ .+...+.|+|.. ... ..+|+.+.. ...|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3466778899999999999976 677889999962 111 123444431 2479999
Q ss_pred cCccCCCeEEEEEEEe
Q psy574 157 DVRLEDAGEYVCEAEN 172 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n 172 (977)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=62.52 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=42.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCc------EEEEcCCCCCCCeEEEEEEEecCce
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT------NLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g------~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
++|.|.+..+.|.+.|.|+|||+.+.... ..... .++ .|.+.....+|.+.|+|+|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999997778999999999999984221 11111 222 3555444455667999999987643
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=66.98 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=58.3
Q ss_pred CCCceEEeCCCeEEEEEEec-ccCceEEEEEECCe-----eCC---------------CCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGS-----AMP---------------EDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~-----~l~---------------~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|+++.|.|... ......+.|++... .+. .++..+.. +.+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35667889999999999998 55677899999532 111 12333322 246999999
Q ss_pred ccCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy574 159 RLEDAGEYVCEAENA-VGKISASATLTV 185 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~-~g~~~~~~~L~V 185 (977)
+.+|+|.|.|.+... .......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999886 334556666665
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=67.54 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeC--C-EE--e------------ecCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--G-HP--I------------DFENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~--g-~~--l------------~~~~~~r~~~~~~-----g~L~I~ 66 (977)
++|....+.+|++|+|.|...... -...+.|||. | .+ | .....+|+....+ ..|.|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 568889999999999999872221 2456999982 2 11 1 0111346665422 259999
Q ss_pred CCCCCCCeEEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKN 82 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n 82 (977)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=62.69 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=51.5
Q ss_pred eEEEEEEecc-cC---ceEEEEEECCe--e--C-----------C---CCceEEe----ccceEEEccCccCCCeEEEEE
Q psy574 116 IIVFECSVGG-DA---VLTVHWKRLGS--A--M-----------P---EDRMSVL----PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 116 ~v~l~C~v~g-~p---~~~i~W~k~~~--~--l-----------~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+++|.|.... .| ..+|.|.|... . + . .+|..+. .+.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6889999853 22 23699988521 1 1 0 1344433 357999999999999999999
Q ss_pred EEe-CCeeEEEEEEEEEe
Q psy574 170 AEN-AVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n-~~g~~~~~~~L~V~ 186 (977)
+.+ ..|..++.+.|+|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 998 67888888999874
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=63.34 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=50.9
Q ss_pred eEEEEEEecccC---ceEEEEEECCee-----C----C----------CCceEEe-----ccceEEEccCccCCCeEEEE
Q psy574 116 IIVFECSVGGDA---VLTVHWKRLGSA-----M----P----------EDRMSVL-----PSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 116 ~v~l~C~v~g~p---~~~i~W~k~~~~-----l----~----------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 168 (977)
+++|.|...... ...|.|+|.... + . .+|..+. .+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999985333 458999995211 1 0 0344443 25689999999999999999
Q ss_pred EEEe-CCeeEEEEEEEEE
Q psy574 169 EAEN-AVGKISASATLTV 185 (977)
Q Consensus 169 ~a~n-~~g~~~~~~~L~V 185 (977)
.+.+ ..|..++.+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677788888887
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=64.09 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=59.1
Q ss_pred eCCeEEEEEEEecCC----------CCeEEEEEcC--eee--eec-------CCCccccEEEEE--ccCCceEEEEeecc
Q psy574 202 VGRDAVFLCGIEGSP----------PPSTFWMLEG--NRS--LIY-------PGDRVDNIQAEI--TSDGMNLLKIQNVS 258 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p----------~~~i~W~~~g--~~~--~~~-------~~~~~~~~~~~~--~~~g~s~L~I~~v~ 258 (977)
.|++++|.|.....+ ...|.|+|.. ... ... .....+|+.+.. ...+...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999997543 3579999962 211 111 111234665542 22355789999999
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.+|+|.|. |.+..........+.|.|.+
T Consensus 81 ~sD~G~Y~-C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYR-CEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEE-EEEEeCCCcceEEEEEEEEE
Confidence 99999999 99998777777788887764
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00036 Score=58.18 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=57.7
Q ss_pred ceEEeCCCeEEEEEEeccc--CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+..+..|++++|+|..... |.+.|+|...+...-. .......+|.+.++...|+|.++|.+....-.....+.+.|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 4468899999999999443 4459999987765331 11236678999999999999999999876555566666666
Q ss_pred e
Q psy574 186 Q 186 (977)
Q Consensus 186 ~ 186 (977)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 4
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=64.03 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=50.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----EEeccceEEEccCccCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
|.+...| ...|.+|++|+|.|.... +...+.|+|++........ .......+.|..++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5555555 457789999999998754 4567999999876432110 011234789999999999999999753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=87.21 Aligned_cols=447 Identities=13% Similarity=0.015 Sum_probs=240.6
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.+.......++...|.|.+.+...+.+.|+.+....... .....++.|.+-...+.+.|+|...+..+.....+.-.
T Consensus 235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEE 311 (1205)
T ss_pred ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccceeeeEE
Confidence 344556677888889999888888888887765433221 22445677888888889999999888776654444333
Q ss_pred Eee----------------CCeEE---ecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEE
Q psy574 185 VQM----------------APIVR---ERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 185 V~~----------------~p~~~---~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
+.. ++... .......+..+..+++.|...+...+. +.|++.+.......+. .+....
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~ 388 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA---LPCPVG 388 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccc---cccccc
Confidence 331 11111 111223455677899999999888775 8999876543221111 111111
Q ss_pred ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCC--CcEEEEEEEcc--C
Q psy574 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR--SEARLRCQVRG--E 320 (977)
Q Consensus 245 ~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g--~~~~L~C~~~~--~ 320 (977)
....+.+.|..+...+.+.|. |.|.|..|.........|......-.+....-....+...+ +.+.+.|...+ .
T Consensus 389 -~~ts~~~~~~~~~~~e~~~~~-~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~ 466 (1205)
T KOG0613|consen 389 -TVTSHTYTIKDAGPGEGYFTR-VPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM 466 (1205)
T ss_pred -cccCcchhhhhcCcccccccc-cceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc
Confidence 122358899999999999999 99999999887776666665332223332333333333333 77888888888 2
Q ss_pred c--eEEEEECCEEcCCC-CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCC
Q psy574 321 G--SVQWWRGEREVGSG-PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY 397 (977)
Q Consensus 321 p--~i~W~~~g~~l~~~-~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~ 397 (977)
+ .++|.+++...... .......-.+|.+.-....+.+.|.-......|....+-...... ..
T Consensus 467 ~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~---------------~~ 531 (1205)
T KOG0613|consen 467 PMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPA---------------AK 531 (1205)
T ss_pred cceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccc---------------cc
Confidence 3 34455554433222 111112223466666666777777655444444322111111100 01
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
..+|..+.--..-.....+.|.+-.......-..|.+... . .+.|........ +..++.+..|+..
T Consensus 532 s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--q-----------lg~~~~~~~r~g-tt~t~~~~~p~~~ 597 (1205)
T KOG0613|consen 532 SSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--Q-----------LGVWRVPESRPG-TTETIGSILPGHE 597 (1205)
T ss_pred cCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--h-----------ccCCcccccCCC-ccccccccccccc
Confidence 1111111111111234566676543322222233333322 1 113433332222 7778899999999
Q ss_pred EEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCC
Q psy574 478 YTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTS 557 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 557 (977)
|.+.+.+.+..|.+.++.-+. +.+...+..... .| ..=.......
T Consensus 598 ~~~t~~~k~~~gE~~ps~~~~--t~k~~D~~q~~~---------~~------------------------~~~~~~ks~~ 642 (1205)
T KOG0613|consen 598 YHVTIKAKNELGESRPSSKST--TLKWQDPSQLKR---------RP------------------------VSEPSYKSPD 642 (1205)
T ss_pred ceeehhhhhcccccCCCCCCc--cccccccccccc---------cc------------------------cCCccccccc
Confidence 999999999999988774222 111111111111 00 0000222344
Q ss_pred CeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 558 TSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 558 tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.+..++|... .......|....-.......|....-. .......+....+.+.|.+.+.+.+..+.
T Consensus 643 ~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~--~e~d~~i~~~~~t~si~~p~k~~e~~~~~ 711 (1205)
T KOG0613|consen 643 SSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKK--QEKDLEILAKKGTTSIVEPEKPPESEAAT 711 (1205)
T ss_pred cccchhcccchhhccccccceeeeeccccCCccccccccc--cccchhhhccCCCCcccccccCCccccCC
Confidence 5667777777 222333344444333333444332221 23345666677777778877777765543
|
|
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00028 Score=61.49 Aligned_cols=72 Identities=22% Similarity=0.506 Sum_probs=52.8
Q ss_pred CeEEEEEEecc-cCceEEEEEECCe----eC--------------CCCceEEe----ccceEEEccCccCCCeEEEEEEE
Q psy574 115 SIIVFECSVGG-DAVLTVHWKRLGS----AM--------------PEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 115 ~~v~l~C~v~g-~p~~~i~W~k~~~----~l--------------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
++++|.|.... ....+|.|.|... .+ -.+|..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36899999853 3456899988532 11 01243332 46799999999999999999975
Q ss_pred -eCCeeEEEEEEEEEe
Q psy574 172 -NAVGKISASATLTVQ 186 (977)
Q Consensus 172 -n~~g~~~~~~~L~V~ 186 (977)
...|..++.+.|+|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 678889999999873
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=63.04 Aligned_cols=73 Identities=29% Similarity=0.452 Sum_probs=51.6
Q ss_pred CCeEEEEEEecccC-ceEEEEEECCee----C----C----------CCceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 114 SSIIVFECSVGGDA-VLTVHWKRLGSA----M----P----------EDRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 114 G~~v~l~C~v~g~p-~~~i~W~k~~~~----l----~----------~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
|++++|.|...... ...|.|+|.... + . .+|.... .+.+|.|.+++.+|+|.|+|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999874332 347999986321 0 0 1122221 3467999999999999999998
Q ss_pred E-eCCeeEEEEEEEEEe
Q psy574 171 E-NAVGKISASATLTVQ 186 (977)
Q Consensus 171 ~-n~~g~~~~~~~L~V~ 186 (977)
. ...|..+..+.|+|.
T Consensus 81 ~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EeCCCCCeeeEEEEEEC
Confidence 7 466778888888873
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=59.40 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=50.6
Q ss_pred EEEEEEe-cccCceEEEEEECCeeCCCCceE--Ee-----ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 117 IVFECSV-GGDAVLTVHWKRLGSAMPEDRMS--VL-----PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~--~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
++|.|.+ .+.|.+.|+|+|++.++...... .. ..++|.|..-..+|...|+|+|.|..-. ......|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899998 55799999999999998653221 11 2246888777777778899999986532 5666667665
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >KOG3632|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.9e-05 Score=85.40 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=157.1
Q ss_pred CCCCeEEeeCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC-CCeE
Q psy574 401 PTKPTLVNQTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV-GLTY 478 (977)
Q Consensus 401 P~~~~v~~~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p-~t~Y 478 (977)
|+...+......++.+.|.+|.. ....+...|.+..... ..........+...+..|.- ...|
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~e---------------lrq~l~~gs~tka~~E~ld~~a~s~ 645 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLME---------------LRQTLYAGSLTKAMQESLDNSAHSG 645 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCCccccceeeeeecchh---------------hhhhcccccchHHHHhhccccCCce
Confidence 44555666677899999999776 3456666776643211 10100111112222233322 3357
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCC
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTST 558 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~t 558 (977)
.+.|.+....|.++... .+..-+.. .+.++.++++-.++.+
T Consensus 646 ~isvq~ltSrGsqd~lr---c~Llvgg~------------------------------------a~vvpsqlrv~n~tqt 686 (1335)
T KOG3632|consen 646 YISVQRLTSRGSQDQLR---CILLVGGA------------------------------------APVVPSQLRVWNATQT 686 (1335)
T ss_pred eeehhhhhccCCCCcce---eeEecccc------------------------------------ccccchhhhhhhhhch
Confidence 77888888778765432 11110111 1233467889999999
Q ss_pred eEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce---------eCCCC
Q psy574 559 SVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV---------DGKPS 629 (977)
Q Consensus 559 sv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g---------~g~~s 629 (977)
+..++|-+-+..+. .+.|-.... ..........+++.+|.|++.|..+|-+.-..- .+...
T Consensus 687 Sa~itwvp~nsn~~---Hviyln~eE-------~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~ 756 (1335)
T KOG3632|consen 687 SAMITWVPFNSNFL---HVIYLNAEE-------PRPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQ 756 (1335)
T ss_pred hhheeeeecCCCcc---eeeecCCcc-------CCCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhc
Confidence 99999998643322 233322211 011124456789999999999999998876511 12234
Q ss_pred CceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCC---CCe-eeeEEEEEEEecCCcceEEEEecCCcCeEEec
Q psy574 630 NLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGT---HNG-VIRTYQIIVGGGNNSALINMTVSASTPTLLLT 704 (977)
Q Consensus 630 ~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~---~ng-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~ 704 (977)
..+.|+|..+-|.+||.+|+++.. +.+.+.++|.||-.+. .|| .+++|.|+... .+......-....+.+.+.
T Consensus 757 atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg--qkv~Evafptagst~Vels 834 (1335)
T KOG3632|consen 757 ATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG--QKVEEVAFPTAGSTKVELS 834 (1335)
T ss_pred cceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC--ceeeeeecccCCceEEEee
Confidence 678899999999999999998753 5578999999997443 455 58999997643 1111111112334455556
Q ss_pred CCCCC-ceEEEEEEEEcCCCcCCCCC
Q psy574 705 NLSAG-IRYSVSLAATNRAGTGPYSR 729 (977)
Q Consensus 705 ~L~p~-t~Y~~~V~A~~~~G~g~~S~ 729 (977)
.|+-+ ..=.|.||.....|++.-|-
T Consensus 835 Qlq~~l~~~~V~vRtms~~gesvdsi 860 (1335)
T KOG3632|consen 835 QLQDGLYHGAVGVRTMSVPGESVDSI 860 (1335)
T ss_pred eehhhheecceeEEecccCccccccc
Confidence 66553 33346777777777765553
|
|
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=62.76 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEe-cccCceE--EEEEECCeeCCCCceEE------eccceEEEccCccCCCeEEEEEEEe
Q psy574 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLT--VHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~--i~W~k~~~~l~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+...+.+..+.+|+.++|.|.+ .+.|... |.|||++..+....+.. ....+|.+..-..+|.-.|+|+|.+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 3444555667899999999999 4577776 79999999986533221 1234577665555555589999998
Q ss_pred CCe
Q psy574 173 AVG 175 (977)
Q Consensus 173 ~~g 175 (977)
..+
T Consensus 84 ~l~ 86 (100)
T cd05755 84 DLR 86 (100)
T ss_pred ccC
Confidence 653
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=65.34 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=45.0
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EE----ee-c----------CCCceEEE--ecC---cEEEEcCCCC
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKN--G---HP----ID-F----------ENSKRLRL--VDG---TNLAIQDSRK 70 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~----l~-~----------~~~~r~~~--~~~---g~L~I~~v~~ 70 (977)
.+.+|++|+|.|.+........+.|+|. | +. +. . -...|+.+ ..+ ..|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5889999999998832233457999983 2 11 10 0 01235544 222 2599999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=63.98 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=54.0
Q ss_pred CCCeEEEEEEecccC-------ceEEEEEECC-----eeC---------------CCCceEEe------ccceEEEccCc
Q psy574 113 ASSIIVFECSVGGDA-------VLTVHWKRLG-----SAM---------------PEDRMSVL------PSRSLQLSDVR 159 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p-------~~~i~W~k~~-----~~l---------------~~~~~~~~------~~~~L~I~~v~ 159 (977)
.|++++|.|.+.-.| .+.|.|.|.. ..+ -.+|..+. .+.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999974322 3689999852 111 01344443 24589999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.+|+|.|+|.+.......+..+.|.|.+
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999998766678888888863
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0062 Score=66.16 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=97.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEecC--ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-C--ceEEEEEEC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVA--GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-A--VLTVHWKRL 136 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~--g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p--~~~i~W~k~ 136 (977)
.|.|.+++..++|.|.=++.+.. .......+.|.+..+|.+...+. .+.+|+...-.|.+..+ | ...+.|++|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 39999999999999987765432 23345667778888887766654 47899999999999543 4 347999999
Q ss_pred CeeCCCC----ceEEeccce-EEEccCcc-C-CCe-----EEEEEEEe-CCee----EEEEEEEEEeeCCeEEecCCCcE
Q psy574 137 GSAMPED----RMSVLPSRS-LQLSDVRL-E-DAG-----EYVCEAEN-AVGK----ISASATLTVQMAPIVRERPSDLR 199 (977)
Q Consensus 137 ~~~l~~~----~~~~~~~~~-L~I~~v~~-~-D~G-----~Y~C~a~n-~~g~----~~~~~~L~V~~~p~~~~~p~~~~ 199 (977)
+.++... ......++. -.++-++. + ..+ ..+|.+.= ..+. .++.+.-.|..+|.+.+.
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~----- 442 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE----- 442 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----
Confidence 9888642 122223332 22222222 2 223 45999863 2222 134444555566666543
Q ss_pred EeeCCeEEEEEEEecCCC--CeEEEEEcCee
Q psy574 200 LEVGRDAVFLCGIEGSPP--PSTFWMLEGNR 228 (977)
Q Consensus 200 v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~ 228 (977)
+..|.- .|.+.-.|. ..+.|+.++..
T Consensus 443 FedG~A---VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 443 IIDGHI---VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred EeCCEE---EEecccccCCCceEEEEecCCC
Confidence 333332 377766655 37889987755
|
|
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00023 Score=60.50 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC------cEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~------g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
++|.|.+..++|...|+|+|||+.+............+ ..|.|..-...|...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999997779999999999999984221111111122 2466665555566699999998653
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=63.30 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCC----CCCCee------eeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceE
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPV----GTHNGV------IRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~----~~~ng~------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
+||. +.+ ....++|.|.+.+|.. ...+.. -..|.|.|++.... ............++|.+|.|++.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCE
Confidence 3665 777 4467899999999940 111111 25699999996544 333445556778899999999999
Q ss_pred EEEEEEEcC--CCcCCCCCceEEee
Q psy574 713 SVSLAATNR--AGTGPYSRPALLSL 735 (977)
Q Consensus 713 ~~~V~A~~~--~G~g~~S~~~~~~t 735 (977)
.|+|+|... ...|.+|++.+++|
T Consensus 81 Cv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 81 CVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEEEeccCCCcCCCCCCEeEeC
Confidence 999999433 34688999988876
|
They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T .... |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.6e-05 Score=89.97 Aligned_cols=100 Identities=33% Similarity=0.547 Sum_probs=86.9
Q ss_pred CccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 1 va~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+|++|-.|...|.-..|..+..++|.|..+.+.|...+.|+||+..+.. +..+....++.|+|..++..|.|+|+|+|
T Consensus 125 ~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a 202 (909)
T KOG1480|consen 125 IAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEA 202 (909)
T ss_pred HHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhhhhcccceeee
Confidence 4788899999999999999999999999999999999999999999965 44555566888999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYI 102 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~ 102 (977)
.|..+.+.+..+.+.|...-.+
T Consensus 203 ~ni~~~r~~~~~~v~vyv~ggw 224 (909)
T KOG1480|consen 203 TNIVAKRKSDPATVQVYVNGGW 224 (909)
T ss_pred ehhhccccccceEEEEEEcCcc
Confidence 9999888888888877754433
|
|
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00069 Score=60.90 Aligned_cols=74 Identities=27% Similarity=0.496 Sum_probs=54.2
Q ss_pred CCeEEEEEEecccC-----------ceEEEEEEC-----Cee-----C-------------CCCceEEe------ccceE
Q psy574 114 SSIIVFECSVGGDA-----------VLTVHWKRL-----GSA-----M-------------PEDRMSVL------PSRSL 153 (977)
Q Consensus 114 G~~v~l~C~v~g~p-----------~~~i~W~k~-----~~~-----l-------------~~~~~~~~------~~~~L 153 (977)
|.+++|.|.+.-.| ...|.|++- +.. + -.+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999986333 248999884 111 1 11344432 35689
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.|.+++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999887788888888863
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0007 Score=62.02 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=53.6
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEcCe------eeeec-C--------CCccccEEEEEc-cCCceEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLEGN------RSLIY-P--------GDRVDNIQAEIT-SDGMNLLK 253 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~g~------~~~~~-~--------~~~~~~~~~~~~-~~g~s~L~ 253 (977)
.|..+.+.+|++++|.|...... ...+.|++... .+... . ....+|+.+... ..+...|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46677889999999999986532 24699987421 11111 0 111234444322 12346899
Q ss_pred EeecccCCCCeEEEEEEEcCCCc
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
|.+++.+|+|.|. |.+.|..+.
T Consensus 84 I~~v~~~D~G~Y~-C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYT-CDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEE-EEEEeCCCC
Confidence 9999999999999 999887554
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00065 Score=56.94 Aligned_cols=80 Identities=30% Similarity=0.478 Sum_probs=56.0
Q ss_pred CCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEE
Q psy574 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYT 479 (977)
Q Consensus 400 ~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~ 479 (977)
+|.++.+......++.++|.++.... . .+|.+++....... ...|...........+.+.+|.|++.|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~--~-~~y~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~L~~~~~Y~ 71 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDG--I-TGYIVGYRVEYREE--------GSSWKEVNVTPSSTSYTLTGLKPGTEYE 71 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCC--C-CccEEEEEEEEecC--------CCccEEEEecCCccEEEEeCcCCCCEEE
Confidence 34456677777779999999775522 1 77888877543321 0145555444446789999999999999
Q ss_pred EEEEEEcCCCC
Q psy574 480 FLVRALNSHGL 490 (977)
Q Consensus 480 ~~V~a~n~~G~ 490 (977)
|+|+|.+..|.
T Consensus 72 v~v~a~~~~g~ 82 (83)
T smart00060 72 FRVRAVNGAGE 82 (83)
T ss_pred EEEEEEcccCC
Confidence 99999987553
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=64.60 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=47.6
Q ss_pred eCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEecCc
Q psy574 18 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
..|+.++|.|.+....| ...|+|+|||+.+..... .......+| .|.|......|.|.|+|+|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 57999999999944446 478999999999853321 122222333 366666666799999999998653
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00081 Score=61.36 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEc----Cee--eeecCCC----c----cccEEEEEc-cCCceEEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE----GNR--SLIYPGD----R----VDNIQAEIT-SDGMNLLKI 254 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~----g~~--~~~~~~~----~----~~~~~~~~~-~~g~s~L~I 254 (977)
.|..+.+.+|++++|.|.....+ ...|.|++. +.+ +...... . .+|+..... ..+...|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45667899999999999986543 236999752 221 2111111 1 123333211 124468999
Q ss_pred eecccCCCCeEEEEEEEcCCCc
Q psy574 255 QNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.+++.+|+|.|+ |.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~-C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYT-CQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEE-EEEEeCCCC
Confidence 999999999999 999987654
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00057 Score=62.66 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=52.0
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECC--ee---C----------CCCceEEe-----ccceEEEccCccC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLG--SA---M----------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~--~~---l----------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
...|..+.+.+|++++|.|..... ....+.|+|.. .. + ..+|+.+. .+.+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 456677889999999999998643 45679999952 11 0 12455543 2347999999999
Q ss_pred CCeEEEEEEEe
Q psy574 162 DAGEYVCEAEN 172 (977)
Q Consensus 162 D~G~Y~C~a~n 172 (977)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999875
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.012 Score=63.37 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=100.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCc--eEEEEEECC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAV--LTVHWKRLG 137 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~--~~i~W~k~~ 137 (977)
.|.|..++.+.+|.|+=...+..+ ....+.+.|..+.+|.+...+. .+.+|+...-.|.+.. +|. ..+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 399999999999999999777654 3345557777788888776654 3789999999999944 343 479999999
Q ss_pred eeCCCCc-eE----EeccceEEEccCccCCCe------EEEEEEEe-CCe----eEEEEEEEEEeeCCeEEecCCCcEEe
Q psy574 138 SAMPEDR-MS----VLPSRSLQLSDVRLEDAG------EYVCEAEN-AVG----KISASATLTVQMAPIVRERPSDLRLE 201 (977)
Q Consensus 138 ~~l~~~~-~~----~~~~~~L~I~~v~~~D~G------~Y~C~a~n-~~g----~~~~~~~L~V~~~p~~~~~p~~~~v~ 201 (977)
..+...+ .. ...++...++-++.++.+ ..+|.+.= ... ...+.+.-.|..+|.+.+. +.
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~ 335 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FG 335 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----Ee
Confidence 9875321 11 113333344444444433 78999862 222 1234444555566666543 22
Q ss_pred eCCeEEEEEEEecCCC-CeEEEEEcCeee
Q psy574 202 VGRDAVFLCGIEGSPP-PSTFWMLEGNRS 229 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~-~~i~W~~~g~~~ 229 (977)
.|.- .|.+.-.|. ..+.|+.++...
T Consensus 336 dG~A---VCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 336 GDEA---VCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred CCEE---EEeccccCCCCEEEEEecCCCC
Confidence 3332 366655443 378898877544
|
|
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00055 Score=61.67 Aligned_cols=63 Identities=22% Similarity=0.480 Sum_probs=44.8
Q ss_pred EEeCCCeEEEEEEeccc-CceEEEEEECCee---------C--------------CCCceEEe--c---cceEEEccCcc
Q psy574 110 TVSASSIIVFECSVGGD-AVLTVHWKRLGSA---------M--------------PEDRMSVL--P---SRSLQLSDVRL 160 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~---------l--------------~~~~~~~~--~---~~~L~I~~v~~ 160 (977)
.+.+|++++|.|.+.+. ....+.|||.... + ...++.+. . ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998653 3457999996321 0 01234331 1 13599999999
Q ss_pred CCCeEEEEEEEe
Q psy574 161 EDAGEYVCEAEN 172 (977)
Q Consensus 161 ~D~G~Y~C~a~n 172 (977)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=62.37 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=63.3
Q ss_pred CcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCC-------ccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
...|.+|++++|.|... +...+.+.|+|....+...... ..+|+.........+.|+|.++..+|+|.|+ |
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~-C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT-C 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE-E
Confidence 34678999999999984 5567789999975443322211 1245553332234469999999999999999 7
Q ss_pred EE-EcCCC-ceeEEEEEEEEC
Q psy574 269 LG-VNAAG-SDLARASLTVSG 287 (977)
Q Consensus 269 ~a-~n~~g-~~~~~~~l~V~~ 287 (977)
.. .-..| ..+..+-|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 54 44456 678888899987
|
|
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00055 Score=60.56 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred EEeeCCeEEEEEEEecC--CCCeEEEEEcCe---e-eeecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 199 RLEVGRDAVFLCGIEGS--PPPSTFWMLEGN---R-SLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~--p~~~i~W~~~g~---~-~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.+.+|++++|.|...+. ....+.|++... + .+... .....++..... .+...|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~- 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-GNTASLTISGAQTEDEADYY- 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCChhhCEEEE-
Confidence 46789999999998765 456799998642 1 11110 112346776553 35578999999999999999
Q ss_pred EEEEcC
Q psy574 268 CLGVNA 273 (977)
Q Consensus 268 C~a~n~ 273 (977)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 987653
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00055 Score=61.21 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=44.9
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeCC----EE---ee---cC----------CCceEEEecC---cEEEEcCCCCCC
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKNG----HP---ID---FE----------NSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~g----~~---l~---~~----------~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
.+.+|++|+|.|.+ ...-...+.|+|.. .. |- .. ...|+....+ .+|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 47899999999987 33344679999832 11 11 00 1345554322 359999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999875
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=55.91 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=48.2
Q ss_pred CeEEEEEEecc-cCceEEEEEECCe----eC-----------C---CCceEEe----ccceEEEccCccCCCeEEEEEEE
Q psy574 115 SIIVFECSVGG-DAVLTVHWKRLGS----AM-----------P---EDRMSVL----PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 115 ~~v~l~C~v~g-~p~~~i~W~k~~~----~l-----------~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
+.++|.|.... ....++.|.|... .+ . .+|..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46889999842 3466889998632 11 0 1344433 35789999999999999999986
Q ss_pred e-CCeeEEEEEEE
Q psy574 172 N-AVGKISASATL 183 (977)
Q Consensus 172 n-~~g~~~~~~~L 183 (977)
. ..|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 56766666654
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=73.95 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=67.6
Q ss_pred cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 654 ~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
..++++|.|+.|+ .......||.++.-..+... ......+..+.+++.||.-++.|..+|.|+|.+|.+++|+.+.+
T Consensus 451 ~nns~t~~wkqp~--~~~~~~dg~~leld~g~~g~-frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 451 HNNSATLSWKQPP--LSTVPADGYILELDDGNGGQ-FREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred cCCceEEEeecCC--CCCCCCcceEEEeecCCCCc-eeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 4578999999884 33456789999887754444 44556678999999999999999999999999999999999999
Q ss_pred eecCC
Q psy574 734 SLTSG 738 (977)
Q Consensus 734 ~t~~~ 738 (977)
+|..-
T Consensus 528 qts~v 532 (699)
T KOG4367|consen 528 QTSEV 532 (699)
T ss_pred eecce
Confidence 88753
|
|
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=55.20 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=41.4
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEEe--cc-------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVL--PS-------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~--~~-------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
++|.|.+.| +|.+.|+|++++..+......+. .+ ..|.|.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999955 59899999999998765332221 22 2344444556677899999998753
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=57.63 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=48.6
Q ss_pred eeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|+.++|.|.+.|. |. ..|+|+++|..+..... ........+|. +.|.|......|.+.|+ |+|.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~----~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~-C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT----TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYT-CVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee----ccccccCCCCCEEEEEEEEECHHHhCCCCCEE-EEEEeCC
Confidence 468899999999997 53 58999999987642111 01222222232 35677776667999999 9999876
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
..
T Consensus 86 ~~ 87 (95)
T cd00098 86 LP 87 (95)
T ss_pred CC
Confidence 54
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00085 Score=54.38 Aligned_cols=61 Identities=34% Similarity=0.609 Sum_probs=44.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCC-----ceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-----~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++|.|.+ .+.+...+.|++++........ ..........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999 5578889999998877643221 11112224569999999999999999998764
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=57.57 Aligned_cols=75 Identities=11% Similarity=0.200 Sum_probs=52.2
Q ss_pred EEeeCCeEEEEEEEec-CCCCeEEEEEcCee----eeec----CCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEE
Q psy574 199 RLEVGRDAVFLCGIEG-SPPPSTFWMLEGNR----SLIY----PGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~----~~~~----~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
.+.+|++++|.|.... .....+.|+|.... ++.. .....+|+.+... ..+...|+|.+++.+|+|.|. |
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW-C 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE-E
Confidence 5789999999998865 34567899986421 1110 1122456666532 245579999999999999999 9
Q ss_pred EEEcCC
Q psy574 269 LGVNAA 274 (977)
Q Consensus 269 ~a~n~~ 274 (977)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 877654
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=53.38 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred EEEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 206 AVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 206 v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
+.|.|.+.+ .|.+.|+|++++..+... . .......++ .+.|.+.....++.+.|+ |.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~-----~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~-C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV-----K-LKEEDENGKTFTVTSSLRFQVDREDDGAPII-CRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc-----e-eeEecCCCCEEEEEEEEEEEcchhhCCCEEE-EEEeChhcCC
Confidence 689999976 488899999999876311 1 111111111 135666666666778999 9999987643
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=79.76 Aligned_cols=425 Identities=11% Similarity=0.017 Sum_probs=227.2
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe----------------------------------cCcEEEEc
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----------------------------------DGTNLAIQ 66 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~----------------------------------~~g~L~I~ 66 (977)
..+.+.|.. |.|.+.+.|+.+|..+.....-++... ......|.
T Consensus 206 ~~v~~v~s~--gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~ 283 (1205)
T KOG0613|consen 206 SRVRAVVSA--GQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQ 283 (1205)
T ss_pred eeEEEEEec--CCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcccccc
Confidence 345567776 788888899888877753321111110 01136667
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeE-EEEEE--------------cCCe---EEeCCCceEEeCCCeEEEEEEecccCc
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDA-VLRVL--------------VKPY---IIRGPKDTTVSASSIIVFECSVGGDAV 128 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~-~l~V~--------------~~P~---~~~~p~~~~v~~G~~v~l~C~v~g~p~ 128 (977)
+....+.+.|+|...+..+....... ...+. .+|. ............+..+++.|...+.+.
T Consensus 284 ~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~ 363 (1205)
T KOG0613|consen 284 NDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQK 363 (1205)
T ss_pred ccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcC
Confidence 77778888999988877654332211 11111 0111 111122335566778999999988877
Q ss_pred eE-EEEEECCeeCCCCc---eEE---eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC-----CeEEecCC
Q psy574 129 LT-VHWKRLGSAMPEDR---MSV---LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-----PIVRERPS 196 (977)
Q Consensus 129 ~~-i~W~k~~~~l~~~~---~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~-----p~~~~~p~ 196 (977)
+. +.|+.++.....+- ... .....+.|..+...+.+.|.|.|.|..|........+|... +.......
T Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~ 443 (1205)
T KOG0613|consen 364 PDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDV 443 (1205)
T ss_pred CchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccc
Confidence 76 99999866543221 111 13456889999999999999999999987655555555532 22222333
Q ss_pred CcEEeeC--CeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 197 DLRLEVG--RDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 197 ~~~v~~G--~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
......+ +.+.+.|...+.+.+ .++|++++.+. .++...... +...+|.+.-....|.|.|. -....
T Consensus 444 ~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~-------s~~s~~l~r-~~~tslLlk~~~~~~~A~~~-~a~~~ 514 (1205)
T KOG0613|consen 444 STTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL-------SDRSVTLTR-DVLTSLLLKVASLSDGAQYT-RALRT 514 (1205)
T ss_pred cccccccCCcccccccCCCCccccceeEeeccCCccc-------ccccccccc-cchhhheeeccCCCccchhh-hhhhc
Confidence 3344444 778889998887755 44555555432 112111111 24457888888889999985 22222
Q ss_pred CCCceeEE--EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcC-------------CCCc
Q psy574 273 AAGSDLAR--ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVG-------------SGPR 337 (977)
Q Consensus 273 ~~g~~~~~--~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~-------------~~~~ 337 (977)
..+....+ ..+.-... .++.++....+. .+.+.+.|..-..... ...+
T Consensus 515 ~~~k~~~~~~~~l~~~~s---~a~~~~~~~~~~--------------~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~ 577 (1205)
T KOG0613|consen 515 LQGKPVPSLDRKLPAAKS---SAPKPIHTQENQ--------------PGTPTLEWEPKPAEASKVSLHYASATRQLGVWR 577 (1205)
T ss_pred cCCCCCCccccccccccc---CCcccccccccC--------------CCCcccccCCCcccccccchhhhhhhhhccCCc
Confidence 22221111 11110000 011000000000 0123344433222111 1111
Q ss_pred EEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEE
Q psy574 338 VNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416 (977)
Q Consensus 338 ~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~l 416 (977)
...... .+.++-...+...+..+-.+.+..|....+..-.+. ...+...++..|..-.+..........
T Consensus 578 ~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t~----------k~~D~~q~~~~~~~~~~~ks~~~~~k~ 647 (1205)
T KOG0613|consen 578 VPESRPGTTETIGSILPGHEYHVTIKAKNELGESRPSSKSTTL----------KWQDPSQLKRRPVSEPSYKSPDSSQKP 647 (1205)
T ss_pred ccccCCCcccccccccccccceeehhhhhcccccCCCCCCccc----------cccccccccccccCCccccccccccch
Confidence 111111 245666666677777777788877766444211110 111112233333333334445567788
Q ss_pred EEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCC
Q psy574 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493 (977)
Q Consensus 417 sW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~ 493 (977)
+|..+......+..-|.......+... .|............++....+.+.|.+...+.+..+....
T Consensus 648 s~l~~l~k~~~~a~~~~~~~~~vd~~~----------K~kv~~~~~e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 648 SKLVGLSKMDLPANLESQVKPTVVSSP----------KKKVKKKKQEKDLEILAKKGTTSIVEPEKPPESEAATPAE 714 (1205)
T ss_pred hcccchhhccccccceeeeeccccCCc----------cccccccccccchhhhccCCCCcccccccCCccccCCccc
Confidence 898887755555566666555544433 4444333334445567778888888888888887766443
|
|
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0053 Score=51.37 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=52.1
Q ss_pred CcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 197 DLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+..+..|++++|+|.....+. +.|.|.-.++... +... .+..+|.+..+...|+|.++ |.+....
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----------~~~~--~~~ktL~~~qv~~qdSG~Wt-C~V~~~~ 74 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----------QILN--QDKKTLNLVQLGPNDSGTWD-CIVSVNS 74 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----------eecc--CCccEEEeceeCcccCCEEE-EEEEECc
Confidence 447889999999999965444 4999997765421 1111 13449999999999999999 9886543
Q ss_pred CceeEEEEEEE
Q psy574 275 GSDLARASLTV 285 (977)
Q Consensus 275 g~~~~~~~l~V 285 (977)
........+.|
T Consensus 75 k~~~~~~~V~V 85 (88)
T cd07694 75 SEKTLKLDIKV 85 (88)
T ss_pred eEEEEEeeEEE
Confidence 33333333333
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=51.86 Aligned_cols=58 Identities=31% Similarity=0.647 Sum_probs=45.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCce--------EEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~--------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+.|.|.+.+.+...+.|++++........ .......|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899998778889999999877654321 12245679999999999999999998765
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.056 Score=59.05 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=107.9
Q ss_pred ceEEEccCccCCCeEEEEEEEeCC-e--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEE
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAV-G--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWML 224 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~-g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~ 224 (977)
-.|.|.+++..++|.|+-+..+.. + ..+..++|.+..+|.+.+.+ .-+.+|+...-.|.+..+-++ .+.|++
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 359999999999999997765432 2 35577778888888665543 467899999999999775443 588999
Q ss_pred cCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCC--CCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEE
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA--APLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVIL 297 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d--~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~ 297 (977)
|+.++.. ......+... .+|. ++|.+......| --..+ |.+.=..+.. .....-.+. +.-.++|.+.
T Consensus 367 ng~~V~~--~~it~t~~~~--~dGlFSrVSTLtlp~~~~~d~~PPsLr-CeV~W~RDsVS~tRfnAaat-P~VY~~PtIS 440 (566)
T PHA03269 367 NFGNIGK--NFITDAIKEN--ADGLFSSVSALHIPAQKNADYPPPAIQ-CNVLWIRDGVSHMKYSAAVT-PDVYPFPNVS 440 (566)
T ss_pred CCcccCc--cccccceeec--CCCceEEEEEEeccCccccCCCCCCce-EEEEEccCCchheecccccC-CccccCCeEE
Confidence 9887642 1111222222 2342 345443221112 34568 7654333332 221111111 1111233332
Q ss_pred eCCCceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCCcEEE----ecCceEEEec---cCCCC-CeEEEEEEE
Q psy574 298 FGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV----TGDGSLVLTD---VTKED-SGEYTCVVK 364 (977)
Q Consensus 298 ~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~~~~~----~~~~sl~I~~---v~~~d-~G~Y~C~a~ 364 (977)
+.+..|. ..|.+.- ...+.|..++........... ...|...|.+ +...| --.|+|.+.
T Consensus 441 -----m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~ 511 (566)
T PHA03269 441 -----IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLD 511 (566)
T ss_pred -----EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEe
Confidence 2233343 3466655 457999988766433222111 1234455555 23222 246999876
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.074 Score=57.46 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=110.1
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEE
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWML 224 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~ 224 (977)
...|.|..++...+|.|+-...+..+. ..+.++|....+|.+.+.+ ..+.+|+...-.|.+..+-++ .+.|++
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 346999999999999999997776553 4456777777888766544 357899999999999765444 588999
Q ss_pred cCeeeeecCCCccccEEEEEccCCc---eEEEEeecccC-CCCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEEeC
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGM---NLLKIQNVSRT-AAPLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVILFG 299 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~---s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~~~ 299 (977)
|+.++... ...+.......+|. ++|++...... ..-..+ |.+.=..+.. .....-.+ .+.-.++|.+.
T Consensus 259 ng~~V~~~---~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLr-C~v~W~rd~vS~sR~nAa~-~P~VY~~P~Is-- 331 (466)
T PHA03270 259 GGDEVFAP---ERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLT-CEFTWHRDSVSFSRRNATG-APTVLPRPTIE-- 331 (466)
T ss_pred CCccccCc---ceeeeeeEecCCCeeEEEEEeccccccCCCCCCce-EEEEEccCCccceeecccc-cCccccCCeEE--
Confidence 99876321 11111122222341 34433332211 123678 8665433333 22211111 11111233332
Q ss_pred CCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEEE-----ecCceEEEeccCC-C-CCeEEEEEEE
Q psy574 300 PANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNV-----TGDGSLVLTDVTK-E-DSGEYTCVVK 364 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~-----~~~~sl~I~~v~~-~-d~G~Y~C~a~ 364 (977)
+.+..| ...|.+.- ...+.|..++........... ...+...|.+..+ + +...|+|.+.
T Consensus 332 ---v~F~dG---~AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~ 400 (466)
T PHA03270 332 ---MEFGGD---EAVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV 400 (466)
T ss_pred ---EEEeCC---EEEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence 223333 34566666 457999988766544332221 1223344432211 1 2367999875
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0028 Score=68.81 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=86.0
Q ss_pred EECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCC-CeeeeEEEEE
Q psy574 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTH-NGVIRTYQII 680 (977)
Q Consensus 603 ~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~-ng~i~~Y~v~ 680 (977)
.-..|.+++-|+|+|.|.|..|.|++|....+.|... -|. +|..+++.. +-..+.+.|++| ..+ .|.|..|..+
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~k-~~eGi~l~wepp--t~p~sg~Iieys~y 725 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIKK-TIEGISLVWEPP--TKPGSGTIIEYSPY 725 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Ccccccccc-cccceeecccCC--CCCCCcceEEeehh
Confidence 3346999999999999999999999999888877644 454 677777654 445699999999 444 6889999876
Q ss_pred EEec------C-CcceEEEEecCCcCeEEe---------cCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 681 VGGG------N-NSALINMTVSASTPTLLL---------TNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 681 ~~~~------~-~~~~~~~~~~~~~~~~~l---------~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
..-. + +........-+-.+.+.+ -+...+-.-.|+|.|.|..|+|+..+...+
T Consensus 726 lAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqvrwl 794 (830)
T KOG4152|consen 726 LAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQVRWL 794 (830)
T ss_pred hHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEEEec
Confidence 4221 1 111111111111222221 234456678899999999999997765544
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.053 Score=59.14 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=95.5
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cC--ceEEEEEECCe
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DA--VLTVHWKRLGS 138 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p--~~~i~W~k~~~ 138 (977)
|.|..++..++|.|+=...+..+. .....+.|..+.+|.+...+. .+.+|+...-.|.+.. +| ...+.|++|+.
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 999999999999998776565443 233445566678888776654 4789999999999944 34 34799999999
Q ss_pred eCCC-Cc----eEEecc------ceEEEccCc-cCCCeEEEEEEEe-CCee----EEEEEEEEEeeCCeEEecCCCcEEe
Q psy574 139 AMPE-DR----MSVLPS------RSLQLSDVR-LEDAGEYVCEAEN-AVGK----ISASATLTVQMAPIVRERPSDLRLE 201 (977)
Q Consensus 139 ~l~~-~~----~~~~~~------~~L~I~~v~-~~D~G~Y~C~a~n-~~g~----~~~~~~L~V~~~p~~~~~p~~~~v~ 201 (977)
++.. .. .....+ ++|.+.... .+.-=..+|.+.= .... ..+.+.-.|..+|.+.+. +.
T Consensus 278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F~ 352 (486)
T PHA03273 278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT-----VE 352 (486)
T ss_pred eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE-----Ee
Confidence 8872 21 111112 233333322 1222378999863 2221 123444455566666543 23
Q ss_pred eCCeEEEEEEEecCCC--CeEEEEEcC
Q psy574 202 VGRDAVFLCGIEGSPP--PSTFWMLEG 226 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~--~~i~W~~~g 226 (977)
.|+- .|.+.-.|. ..+.|+.++
T Consensus 353 ~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 353 DGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred CCEE---EEecccccCCCeeEEEEccC
Confidence 3332 377776665 578898876
|
|
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=57.71 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=53.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC------CCeEEEEEcCe-----eeee-cC------CCccccEEEEEc-cCCceEEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP------PPSTFWMLEGN-----RSLI-YP------GDRVDNIQAEIT-SDGMNLLKI 254 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p------~~~i~W~~~g~-----~~~~-~~------~~~~~~~~~~~~-~~g~s~L~I 254 (977)
.|..+.+.+|+.++|.|...... ...+.|++... .+.. .. ....+|+++... ..+...|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46667899999999999875322 24689998642 1111 11 112357776432 345578999
Q ss_pred eecccCCCCeEEEEEEEcC
Q psy574 255 QNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~ 273 (977)
.+++.+|+|.|. |.....
T Consensus 85 ~~l~~~Dsg~Y~-C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYF-FRVELG 102 (119)
T ss_pred ccCChhhCeEEE-EEEEcC
Confidence 999999999999 987553
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0022 Score=56.03 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=44.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecC-CCceEEEecCcEEE---EcCCCCCCCeEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLA---IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~-~~~r~~~~~~g~L~---I~~v~~~D~G~Y~C~a 80 (977)
|.+.+.+.... |+.++|.|.+....|.. .|.|+|||+.+... .........+|+.. .-.+..+|.+.|+|++
T Consensus 3 P~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V 79 (93)
T cd07698 3 PEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRV 79 (93)
T ss_pred CEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEE
Confidence 44444443332 78899999994446664 89999999643221 11222333344322 1233345888999999
Q ss_pred EecC
Q psy574 81 KNVA 84 (977)
Q Consensus 81 ~n~~ 84 (977)
.+..
T Consensus 80 ~H~~ 83 (93)
T cd07698 80 EHSG 83 (93)
T ss_pred EeCC
Confidence 8753
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=56.79 Aligned_cols=64 Identities=20% Similarity=0.484 Sum_probs=44.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeec--------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~--------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|+.+.|.|.+..++|.+.|.|+.++..+.. ...+.+... ..|.+..-+..+...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCCeEEEEEEECCcc
Confidence 789999998878999999999999987711 111111111 2466765555567799999998753
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0017 Score=54.88 Aligned_cols=58 Identities=22% Similarity=0.467 Sum_probs=39.0
Q ss_pred cEEEEEECCCCCCC--CeEEEEeCCE-----Eeec-----------CCCceEEEecC-----cEEEEcCCCCCCCeEEEE
Q psy574 22 TALLECGPPRGHPE--PTLVWKKNGH-----PIDF-----------ENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 22 ~v~L~C~~~~g~P~--~~v~W~k~g~-----~l~~-----------~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C 78 (977)
+|+|.|.+ ..... ..+.|++... .+.. ...+|+.+... .+|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKA-SGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEE-eccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 47899988 33222 4799998431 1110 23456665543 369999999999999999
Q ss_pred EE
Q psy574 79 VV 80 (977)
Q Consensus 79 ~a 80 (977)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
|
|
| >PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.29 Score=51.74 Aligned_cols=138 Identities=18% Similarity=0.133 Sum_probs=80.7
Q ss_pred cCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccC
Q psy574 464 SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGG 543 (977)
Q Consensus 464 ~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~ 543 (977)
-..+.+.++.|+..|.+++.+.|.... .+ ...+......+...|-
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~--~~--~~kV~aast~~~~~~~------------------------------- 171 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEG--PS--TFKVQAASTNPSKQPY------------------------------- 171 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCC--ce--EEEEEEecCCcccCCC-------------------------------
Confidence 346789999999999999988764322 11 1111100111111111
Q ss_pred CceEEEEEee--E--eCCCeEEEEEEecCCCccceEEEEEEecCCC---------------------CCceEEEEeec--
Q psy574 544 GSLIELTEVK--P--MTSTSVKLTWEILNTDYIEGVYIYSRGLDPP---------------------ASVAMLTVLHA-- 596 (977)
Q Consensus 544 ~~~~~~l~~~--~--~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~---------------------~~~~~~~~~~~-- 596 (977)
|..|.+..+. . .+=++++|.|.+-+... ..|-|+-++.... .+|..+.....
T Consensus 172 P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n 250 (300)
T PF10179_consen 172 PQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPN 250 (300)
T ss_pred CCCCCCCceeEEcCCcccceEEEEEecCCCCC-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCc
Confidence 2222334443 3 34479999999874444 6787776654431 11122211111
Q ss_pred ------CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEecc
Q psy574 597 ------GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637 (977)
Q Consensus 597 ------~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~ 637 (977)
......+|.+|+||+.|.|.|.+.-..|..-+...+.++|.
T Consensus 251 ~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 251 SSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred cccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence 11234589999999999999999887777766666777664
|
The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.054 Score=59.10 Aligned_cols=198 Identities=17% Similarity=0.224 Sum_probs=107.8
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEE--EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKIS--ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEG 226 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g 226 (977)
.|.|..++..++|.|+-...+..+... ..+++....+|.+.+.+ ..+.+|+...-.|.+..+-++ .+.|++||
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 499999999999999987666555433 44444446777765543 467899999999999765443 68899999
Q ss_pred eeeeecCCCccccEEEEEccCC---ceEEEEeeccc-CCCCeEEEEEEEcCCCceeEEEEEEEEC-CCCCCCCeEEeCCC
Q psy574 227 NRSLIYPGDRVDNIQAEITSDG---MNLLKIQNVSR-TAAPLIILCLGVNAAGSDLARASLTVSG-PDPNPPPVILFGPA 301 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g---~s~L~I~~v~~-~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~~~~~pp~i~~~p~ 301 (977)
.++... ......+..... ++ .++|.+..... +..-..+ |.+.=..+..+.+ .+.-.. +.-.++|.+.
T Consensus 277 ~~V~~~-~~~~~~~~~~~~-gl~T~vStlt~~~~~~~~~PP~lr-C~v~W~rd~vS~~-RfsAt~~P~Vy~~P~Is---- 348 (486)
T PHA03273 277 KEVDFT-KYVTNASSVWVD-GLITRISTLSIPVDPDEEYTPSLR-CSIEWYRDEVSFA-RIAKAGTPSVFVAPTVS---- 348 (486)
T ss_pred eecccc-ccceeeEEEecC-CceEEEEEEeccCcccCCCCCCce-EEEEEccCCccee-eccccccCccccCCeEE----
Confidence 977411 111222222221 11 24555555322 3344678 8665433333221 111111 1111234332
Q ss_pred ceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCCcEEE-----ecCceEEEec---cCCCCCe--EEEEEEE
Q psy574 302 NQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV-----TGDGSLVLTD---VTKEDSG--EYTCVVK 364 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~~~~~-----~~~~sl~I~~---v~~~d~G--~Y~C~a~ 364 (977)
+.+..|+ ..|.+.- ...+.|..++..-....+..+ ...+...|.. +...| | .|+|.+.
T Consensus 349 -~~F~~G~---AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~ 420 (486)
T PHA03273 349 -VTVEDGD---AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIE 420 (486)
T ss_pred -EEEeCCE---EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEe
Confidence 2233333 3466665 457999887631111111111 2334456655 33332 4 7999876
|
|
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0033 Score=52.37 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=40.5
Q ss_pred cEEEEEECCCCCCC-CeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEec
Q psy574 22 TALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 22 ~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.++|.|.+....|. ..|.|+|||+.+..+.. .......+| .|.|.....++...|+|++.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 47899999555676 69999999997522110 111112233 4666666667778999999865
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=56.11 Aligned_cols=72 Identities=14% Similarity=0.337 Sum_probs=49.4
Q ss_pred EEeeCCeEEEEEEEecCCCCeEEEEEcCee-------eeecCC--C--------ccccEEEEEccCCceEEEEeecccCC
Q psy574 199 RLEVGRDAVFLCGIEGSPPPSTFWMLEGNR-------SLIYPG--D--------RVDNIQAEITSDGMNLLKIQNVSRTA 261 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~-------~~~~~~--~--------~~~~~~~~~~~~g~s~L~I~~v~~~d 261 (977)
.+.+|++++|.|.........+.|++.... +..... . ...++..... .....|+|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-SNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-CCEEEEEECCCCHHH
Confidence 467899999999986655567999986522 111110 0 1345655443 355689999999999
Q ss_pred CCeEEEEEEEc
Q psy574 262 APLIILCLGVN 272 (977)
Q Consensus 262 ~G~Y~~C~a~n 272 (977)
+|.|. |.+.+
T Consensus 81 sgtY~-Ca~~~ 90 (104)
T cd05720 81 EGYYF-CSVAS 90 (104)
T ss_pred CEEEE-EEEcc
Confidence 99999 97653
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0059 Score=53.23 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=45.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc------EEEEcCCCCCCCeEEEEEEEe
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n 82 (977)
..++..+..-......+.|.+..|.|.+.|.|+++.... .........+| .|.+.....+|...|+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~~~~---~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 4 SAEAGPVALGGEPVTVATCVSANGKPPATISWETTLGGE---AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred ccceeccccCCCccEEEEEECCCCcCCCEEEEEeCCCCc---ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 344544545555677889999899999999999971111 01111111222 466655555555599999988
Q ss_pred cC
Q psy574 83 VA 84 (977)
Q Consensus 83 ~~ 84 (977)
..
T Consensus 81 ~~ 82 (95)
T cd05719 81 PT 82 (95)
T ss_pred cc
Confidence 65
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0045 Score=53.99 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=42.2
Q ss_pred eCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecC-CCceEEEecCcEEEEc---CCCCCCCeEEEEEEEecC
Q psy574 18 AAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~-~~~r~~~~~~g~L~I~---~v~~~D~G~Y~C~a~n~~ 84 (977)
..|+.++|.|.+...+|.. .+.|+|||+.+... ......-..+|+..+. .+...+...|+|++....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4689999999996657765 89999999997432 1111112223332211 223345669999998764
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.91 Score=48.62 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=74.3
Q ss_pred EEeeCCeEEEEEEEec---CCCCeEEEEEcCeeee------------ecCCCccccEEEEEcc---C--CceEEEEeecc
Q psy574 199 RLEVGRDAVFLCGIEG---SPPPSTFWMLEGNRSL------------IYPGDRVDNIQAEITS---D--GMNLLKIQNVS 258 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g---~p~~~i~W~~~g~~~~------------~~~~~~~~~~~~~~~~---~--g~s~L~I~~v~ 258 (977)
.+..|..+.|.|...- .....+.|...|-++- .........+.+..-. + ..++|+|.++.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 5566999999998854 3445788987653321 0011112233333211 1 23799999999
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecC-CCcEEEEEEEcc----CceEEEEECCEEcC
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL-RSEARLRCQVRG----EGSVQWWRGEREVG 333 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~-g~~~~L~C~~~~----~p~i~W~~~g~~l~ 333 (977)
...+|=|+ |+|....-......-|.|.+ .-.+ ..... .......|-+-. +++|.|+-+|....
T Consensus 355 I~N~GCY~-~~a~~g~~~~ec~~Cl~V~d-----~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 355 INNAGCYE-AQAFMGKFKEECRHCFKVAD-----HVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEcCCceE-EEEecCcchhhhhhheEecc-----EEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999 99987644444444455543 1111 11222 334566788776 66799999987553
|
|
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0047 Score=52.45 Aligned_cols=58 Identities=14% Similarity=0.354 Sum_probs=41.4
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEEe---c------cceEEEccCccCCCeEEEEEEEeCC
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVL---P------SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~---~------~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
++|.|.+.| +|...|+|+|++..+........ . ...|.+..-..+|...|+|++.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999955 78899999999998754322111 1 2356666555667789999999864
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.005 Score=55.44 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=45.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCc-------EEEEcCCCCCCCe-EEEEEEEecC
Q psy574 14 SQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGT-------NLAIQDSRKTDDG-RYQCVVKNVA 84 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g-------~L~I~~v~~~D~G-~Y~C~a~n~~ 84 (977)
...+..|+.++|.|.+...+|. ..|+|+|||+.+... ........++ .|.+.. ...|.| .|.|.+.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3456688999999999777885 699999999998432 1222222222 354543 344444 6999998864
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0066 Score=55.55 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=53.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC--CCeEEEEEcCe---eeee---c--------CCCccccEEEEEccC-CceEEEEee
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP--PPSTFWMLEGN---RSLI---Y--------PGDRVDNIQAEITSD-GMNLLKIQN 256 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~~g~---~~~~---~--------~~~~~~~~~~~~~~~-g~s~L~I~~ 256 (977)
.|....+.+|++++|.|...... ...+.|+|... +..+ . .....+|+....... ....|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45667889999999999886543 45689998642 2111 1 111235677664422 235799999
Q ss_pred cccCCCCeEEEEEEEc
Q psy574 257 VSRTAAPLIILCLGVN 272 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n 272 (977)
++.+|+|.|. |.+..
T Consensus 83 ~~~~Dsa~Yy-Ca~~~ 97 (117)
T cd04981 83 LTPEDTAVYY-CARGL 97 (117)
T ss_pred CCHHHCEEEE-EEEEc
Confidence 9999999999 97754
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0055 Score=52.98 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=43.1
Q ss_pred CCeEEEEEEe-cccCceEEEEEECCeeCCCCceEE--e-------ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSV--L-------PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 114 G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~--~-------~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|+.+.|.|.+ .|+|.+.|.|+.++..+....... . ....|.+..-..++...++|.|.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 7899999987 788999999999998772111111 1 113566665556677889999998754
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=50.04 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeecCCCccccEEEEEccCCc-eEEEEeecccCCCCe
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPL 264 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~G~ 264 (977)
+|.+.+.+.... ++.++|.|.+.|+ |.. .+.|+++|..... ..... ....+.++. +....-.+...+...
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~--~~~~~~d~ty~~~s~l~v~~~~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESG--EILPNGDGTYQLWVTLEVPPEDKAR 74 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--ccccc--ceEECCCCeEEEEEEEEECCCCCCE
Confidence 444444433332 7789999999996 443 8899999963211 11111 122222332 122223344458899
Q ss_pred EEEEEEEcCCC
Q psy574 265 IILCLGVNAAG 275 (977)
Q Consensus 265 Y~~C~a~n~~g 275 (977)
|+ |.+.+...
T Consensus 75 yt-C~V~H~~~ 84 (93)
T cd07698 75 YS-CRVEHSGL 84 (93)
T ss_pred EE-EEEEeCCC
Confidence 99 99987654
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0049 Score=53.37 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=43.0
Q ss_pred EeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCcEEEEc---CCCCCCCeEEEEEEEec
Q psy574 17 VAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g~L~I~---~v~~~D~G~Y~C~a~n~ 83 (977)
+..|+..+|.|.+...+| ...|.|+|||+.+. +.. ..+....+++..+. .+.+.+...|.|++...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 345777899999955466 45899999999985 221 12223334543322 33466777999999875
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=52.62 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=43.7
Q ss_pred CcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCC-c----eEEEEeecccCCC-CeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-M----NLLKIQNVSRTAA-PLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g-~----s~L~I~~v~~~d~-G~Y~~C 268 (977)
......|+.++|.|.+.++-+ ..++|+|||..+... .. ......++ . +.|.+..- ..|. -.|+ |
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~----~~--~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~yt-C 86 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE----QP--NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVT-C 86 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc----cc--ceeeCCCCCcEEEEEEEEEECc-cccccCceE-E
Confidence 334557888999999988544 488999999886321 01 11111121 1 25556543 3444 4599 9
Q ss_pred EEEcCCCc
Q psy574 269 LGVNAAGS 276 (977)
Q Consensus 269 ~a~n~~g~ 276 (977)
.+.+....
T Consensus 87 ~V~H~~l~ 94 (111)
T cd05772 87 EVQHRTLQ 94 (111)
T ss_pred EEEeCCCC
Confidence 99887543
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0055 Score=53.36 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=45.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCC-CceEEEecCc------EEEEcCCCCCCCeEEEEEEEe
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~-~~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|........+.++|.|.+....|. ..|.|+|||+.+.... ........++ .|.|..-...+...|.|++.+
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence 3444434466779999999555675 6899999999873211 0111112222 355654444466799999987
Q ss_pred cC
Q psy574 83 VA 84 (977)
Q Consensus 83 ~~ 84 (977)
..
T Consensus 85 ~~ 86 (94)
T cd05847 85 QG 86 (94)
T ss_pred CC
Confidence 64
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=51.48 Aligned_cols=68 Identities=9% Similarity=0.235 Sum_probs=42.5
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+..-.-..+.+.|....|.|.+.|.|+++..... ...++++++. ..|.+..-..+|...|+|++.+..
T Consensus 10 ~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 10 VSAGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred eecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEEecCHHHCCCEEEEEEeCcc
Confidence 3333346778999988899999999999721110 1111222221 246665555555669999999864
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0026 Score=56.23 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEec
Q psy574 12 PKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
|.......++.++|.|.+...+| ...|.|+|||+.+..+.. .......+| .|.+..-...+...|+|.+...
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 33344557888999999955577 568999999999842210 111112234 3555444445567999999875
Q ss_pred C
Q psy574 84 A 84 (977)
Q Consensus 84 ~ 84 (977)
.
T Consensus 89 ~ 89 (100)
T cd07699 89 G 89 (100)
T ss_pred C
Confidence 3
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0053 Score=48.14 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=36.4
Q ss_pred EeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-..|.+|+|+|.. . .. .+.|++|++.+.. . +..+.+.+.. ++.|.|+|.+.+
T Consensus 4 sisGTtVtlTCP~-~--~~-~i~W~~n~~~~~g-~--------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPL-S--GD-DIKWKKNDQVSQG-S--------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCC-C--CC-CceEEeCCccCCC-C--------CceEEeeccC-CCCceEEEEeCC
Confidence 4679999999954 2 22 2999999977732 1 2234445555 889999999864
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0062 Score=47.77 Aligned_cols=53 Identities=21% Similarity=0.465 Sum_probs=37.4
Q ss_pred EeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeC
Q psy574 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 111 v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
-..|.+|+|+|...+. .+.|++++..+... +..+.+.+-. +++|.|+|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 3579999999976422 29999999766542 2234444555 8899999999654
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.36 Score=51.92 Aligned_cols=158 Identities=17% Similarity=0.256 Sum_probs=88.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCcee-eeEeEEEEEE-cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEEC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVL-VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRL 136 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~ 136 (977)
.|.|.++..+|+|.|+....+..... ..+.+.+.+. -+|.+...+. .+.+|+...-.|.+..+ |. ..+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 49999999999997766665543221 1222334443 4555665554 37899999999999543 43 47999999
Q ss_pred CeeCCCCce---EE--e--cc-----ceEEEccCccCCCeEEEEEEEeCCe-e---EEEEEEEEEeeCCeEEecCCCcEE
Q psy574 137 GSAMPEDRM---SV--L--PS-----RSLQLSDVRLEDAGEYVCEAENAVG-K---ISASATLTVQMAPIVRERPSDLRL 200 (977)
Q Consensus 137 ~~~l~~~~~---~~--~--~~-----~~L~I~~v~~~D~G~Y~C~a~n~~g-~---~~~~~~L~V~~~p~~~~~p~~~~v 200 (977)
|..+..... .. . .+ ++|.+.+...+.-=..+|.+.=..+ . ..+.+.-.|..+|.+.+. .
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv~-----F 360 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISLA-----F 360 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEEE-----E
Confidence 887643211 11 0 11 2333333322223378999873222 1 223333344455555433 3
Q ss_pred eeCCeEEEEEEEecCC-CCeEEEEEcCeee
Q psy574 201 EVGRDAVFLCGIEGSP-PPSTFWMLEGNRS 229 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~ 229 (977)
..|+- .|.+.-.| ...+.|+..+...
T Consensus 361 edG~A---VCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 361 KDGYA---ICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred eCCEE---EEeccccCCCcEEEEEecCCCC
Confidence 33333 36665444 3478898877543
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.3 Score=52.51 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=105.0
Q ss_pred eEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEe-eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEc
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLE 225 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~-~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~ 225 (977)
.|.|.++...|+|.|+-...+.... ..+.+.+.+. .||.+.+.+ ..+..|+...-.|.+..+-++ .+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 6999999999999776555543333 3455555554 455555443 356899999999999775444 5889999
Q ss_pred CeeeeecCCCccccEEEEEccCC---ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-CCCCCCCeEEeCCC
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDG---MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG-PDPNPPPVILFGPA 301 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g---~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~~~~~pp~i~~~p~ 301 (977)
|.++.... .....+-.....++ .++|.+.+...+..-..+ |.+.=..+....+. .-.. +.-.++|.+.
T Consensus 286 G~~V~~~~-~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLR-CeV~W~rd~v~s~r--nAaatP~VY~~P~IS---- 357 (490)
T PHA03271 286 GNIATPRK-DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKIS-CLVAWKQGDMISTT--NATAIPTVYHHPRIS---- 357 (490)
T ss_pred CccccCcc-ccceeEEEecCCCceeEEEEEEcccccCCCCCCce-EEEEEccCCceeee--ecccCCccccCCeEE----
Confidence 98763221 11111111111122 134444443333344688 86643333222221 1111 1112233332
Q ss_pred ceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCC--C----cEEEecCceEEEec-cCCCCC---eEEEEEEE
Q psy574 302 NQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSG--P----RVNVTGDGSLVLTD-VTKEDS---GEYTCVVK 364 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~--~----~~~~~~~~sl~I~~-v~~~d~---G~Y~C~a~ 364 (977)
+.+..|+ ..|.+.- ...+.|..++...... + .......+...|.+ +..+|. -.|+|.+.
T Consensus 358 -v~FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~ 429 (490)
T PHA03271 358 -LAFKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLI 429 (490)
T ss_pred -EEEeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEe
Confidence 2233343 3466665 4579998877654322 1 01112234455555 333332 46999876
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.009 Score=50.37 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=43.4
Q ss_pred eEEEEEEEecCCCC--eEEEEEcCe----eeeecCC---------CccccEEEEEcc-CCceEEEEeecccCCCCeEEEE
Q psy574 205 DAVFLCGIEGSPPP--STFWMLEGN----RSLIYPG---------DRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 205 ~v~L~C~~~g~p~~--~i~W~~~g~----~~~~~~~---------~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
+++|.|.+.....+ .+.|++... .+..... ...+|+.+.... .+...|+|.+++.+|+|.|. |
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~-C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYY-C 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEE-E
Confidence 47899998765543 789998652 1111110 224566666543 45578999999999999999 8
Q ss_pred E
Q psy574 269 L 269 (977)
Q Consensus 269 ~ 269 (977)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 5
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=51.77 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=49.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--C-CeEEEEe--CCEEee------------cCCCceEEEecC-----cEEEEc
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--E-PTLVWKK--NGHPID------------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~-~~v~W~k--~g~~l~------------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+++....+..|+.++|.|.+ +|.- . -.+.|.| +| .++ .....|+++..+ -+|.|.
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~ 79 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQ 79 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEc
Confidence 356778899999999999988 4432 2 4688988 33 211 112345544432 159999
Q ss_pred CCCCCCCeEEEEEE
Q psy574 67 DSRKTDDGRYQCVV 80 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a 80 (977)
+++.+|++.|.|..
T Consensus 80 ~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 80 NLRANQTDIYFCKI 93 (115)
T ss_pred CCCHHHCeEEEEEe
Confidence 99999999999975
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.031 Score=50.16 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEE--EecCCcCeEEecCCC--CCceEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM--TVSASTPTLLLTNLS--AGIRYSVSL 716 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~l~~L~--p~t~Y~~~V 716 (977)
...+|.+|++...+ ....|+|++++... .-..|.|+|+......+... -.....+++-|++.. +...|.++|
T Consensus 21 ~lp~P~nv~~~s~n-f~~iL~W~~~~~~~---~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 21 SLPAPQNVTVDSVN-FKHILRWDPGPGSP---PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SGSSCEEEEEEEET-TEEEEEEEESTTSS---STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred cCCCCCeeEEEEEC-CceEEEeCCCCCCC---CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 33488999998876 56889999964222 33689999994344444443 234456888887754 788999999
Q ss_pred EEEcCCCcC
Q psy574 717 AATNRAGTG 725 (977)
Q Consensus 717 ~A~~~~G~g 725 (977)
+|......+
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 998765443
|
... |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=51.91 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=45.3
Q ss_pred CcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCC------CccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPG------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
......++.++|.|.+.|. | ...|.|+++|..+..... ...+.|++. +.|.+..-...+...|+ |
T Consensus 11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~------s~L~v~~~~w~~~~~~s-C 83 (100)
T cd07699 11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS------SYLTLTKSDWNKHKVYT-C 83 (100)
T ss_pred HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE------EEEEEcHHHhCCCCeEE-E
Confidence 3355567889999999885 4 347899999987631100 012222222 25666555555678999 9
Q ss_pred EEEcCCC
Q psy574 269 LGVNAAG 275 (977)
Q Consensus 269 ~a~n~~g 275 (977)
.+.....
T Consensus 84 ~V~H~~l 90 (100)
T cd07699 84 EVTHEGL 90 (100)
T ss_pred EEEecCC
Confidence 9987654
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.023 Score=49.70 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=45.6
Q ss_pred cCCCcEEeeCCeEEEEEEEecC-CCC--eEEEEEcCeeeeecC-----CCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGS-PPP--STFWMLEGNRSLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~-p~~--~i~W~~~g~~~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
.|....+..|+.++|.|.+.|. -++ .+.|.|++....... ...++.|++.. .|.+..-...+.-.|
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~y 78 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTF 78 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcE
Confidence 4444566778999999999998 433 679999875332110 01122233222 555555444456689
Q ss_pred EEEEEEcCCC
Q psy574 266 ILCLGVNAAG 275 (977)
Q Consensus 266 ~~C~a~n~~g 275 (977)
+ |.+.....
T Consensus 79 s-C~V~H~~l 87 (96)
T cd07696 79 Q-CKVTHPDL 87 (96)
T ss_pred E-EEEECCCC
Confidence 9 99887654
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=47.45 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=40.3
Q ss_pred EEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 206 AVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 206 v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
++|.|.+.|+ |. ..+.|+|+|.++.. ...........+|. +.|.|.....++...|+ |.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~----~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~t-C~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTS----GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYT-CQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCC----CEEECceEECCCCCEEEEEEEEEccccCCCCCEEE-EEEEEcC
Confidence 6899999986 44 48999999986321 11111122222332 35666666667888999 9987754
|
|
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.017 Score=50.24 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=42.8
Q ss_pred eCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCce----EEeccc------eEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 112 SASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~~----~~~~~~------~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..++.++|.|.+.|. |. ..|+|+|++..+..+.. ....++ .|.|..-...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 356779999999774 54 68999999988643211 111222 34454443446689999999876543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.036 Score=53.52 Aligned_cols=121 Identities=14% Similarity=0.281 Sum_probs=73.8
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-EEeecCC----------------CceEEEe---cCcEEEEcCCCCCC
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-HPIDFEN----------------SKRLRLV---DGTNLAIQDSRKTD 72 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-~~l~~~~----------------~~r~~~~---~~g~L~I~~v~~~D 72 (977)
.++...+|+.|.|.|..+.+.--....|+++. ..|.... ...+.+. ..++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 35788899999999998666666788999854 2332110 1122222 13579999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEe-CCCeEEEEEEecccCceEEEEEECCee
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS-ASSIIVFECSVGGDAVLTVHWKRLGSA 139 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~-~G~~v~l~C~v~g~p~~~i~W~k~~~~ 139 (977)
.|-|+|++....+..+.-.-=|.|+..-.+.. .. -.....+.|-+...-.....|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999876655443333344432211111 11 223456789884332222388887764
|
|
| >PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.038 Score=49.62 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=58.9
Q ss_pred EEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC--CCcEEEEEEEEeecc
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA--HYSRYEFFLVPFFGS 623 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~~~V~a~n~~ 623 (977)
|.++++...+-. ..|.|+++ ....-..|.|+|+ ......|...........+++.|++.. +...|.++|+|..+.
T Consensus 25 P~nv~~~s~nf~-~iL~W~~~~~~~~~~~ytVq~~-~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~ 102 (107)
T PF01108_consen 25 PQNVTVDSVNFK-HILRWDPGPGSPPNVTYTVQYK-KYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGN 102 (107)
T ss_dssp CEEEEEEEETTE-EEEEEEESTTSSSTEEEEEEEE-ESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETT
T ss_pred CCeeEEEEECCc-eEEEeCCCCCCCCCeEEEEEEE-ecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCC
Confidence 478888888655 79999996 4556678999999 434679988733333456889998844 789999999998765
Q ss_pred eeC
Q psy574 624 VDG 626 (977)
Q Consensus 624 g~g 626 (977)
..+
T Consensus 103 ~~S 105 (107)
T PF01108_consen 103 QTS 105 (107)
T ss_dssp EEE
T ss_pred ccC
Confidence 544
|
... |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0066 Score=53.85 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=44.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceE--EEe--cCc------EEEEcCCCCCCCeEEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRL--RLV--DGT------NLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~--~~~--~~g------~L~I~~v~~~D~G~Y~C~ 79 (977)
.|....+..|+.++|.|.+...+|.. .|.|+|||+.+........ ... .+| .|.|..-...+...|+|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 34344556688999999995556654 7899999998742211000 111 023 355533333455689999
Q ss_pred EEecC
Q psy574 80 VKNVA 84 (977)
Q Consensus 80 a~n~~ 84 (977)
+....
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 98753
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0073 Score=52.83 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=44.1
Q ss_pred ecccceEEeCCCcEEEEEECCCC-CCC-CeEEEEeCCEEeecCCCceEEEecCcE------EEEcCCCCCCCeEEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG-HPE-PTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g-~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~------L~I~~v~~~D~G~Y~C~a~ 81 (977)
..|....+..|+.++|.|.+... +|. ..|+|+|||...............+|+ |.+..-...+.-.|.|.+.
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 34555567789999999999555 354 589999987433111111112223443 4444333334458999998
Q ss_pred ecC
Q psy574 82 NVA 84 (977)
Q Consensus 82 n~~ 84 (977)
...
T Consensus 84 H~~ 86 (96)
T cd07696 84 HPD 86 (96)
T ss_pred CCC
Confidence 753
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >KOG4228|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.018 Score=69.58 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=154.8
Q ss_pred EEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEe
Q psy574 358 EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMY 437 (977)
Q Consensus 358 ~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~ 437 (977)
+|+|.+....|-......+.|.. .|..|..+.+......++...|..... ....|.+.++
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~----------------~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~ 60 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNG----------------GPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFK 60 (1087)
T ss_pred CeeeeecccCCCccceEEEEecC----------------CCCCCCCcccccccccceeehhhccCC----Chhhhheeee
Confidence 48999999999888888888873 344444555666667778888876544 4566777776
Q ss_pred ecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcc
Q psy574 438 SRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517 (977)
Q Consensus 438 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~ 517 (977)
...... .... ......+....+.+...|.+ .++|..|.+.++.+....+......
T Consensus 61 ~~~s~~----------~~~~---~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~---------- 115 (1087)
T KOG4228|consen 61 ALSSGY----------GYID---VDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATL---------- 115 (1087)
T ss_pred EeccCc----------ceee---ccceeecccCCCCCcchhhh--hhcccccccccccccCCcccccccc----------
Confidence 554322 1111 11222355666777777777 7888888876664433222211100
Q ss_pred eeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecC
Q psy574 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAG 597 (977)
Q Consensus 518 ~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~ 597 (977)
+ . .+...+.........++|..+. ..
T Consensus 116 -~--~------------------------~~~~~~~~~~a~~~~~~~~~~~------------------------~~--- 141 (1087)
T KOG4228|consen 116 -S--L------------------------QRDVQALMLSAATAHVNWRRFS------------------------AT--- 141 (1087)
T ss_pred -c--c------------------------ccchhhhhhhhhhhccCccccc------------------------cc---
Confidence 0 0 0111222233333444444330 00
Q ss_pred ccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 598 ~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
+.+.+....+.++.+..+.+.|.+..|..++ ...+.+.+++.|.++. ...+..|
T Consensus 142 -----------------~~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~y 195 (1087)
T KOG4228|consen 142 -----------------VGPLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPPH----AVSLDTY 195 (1087)
T ss_pred -----------------ccccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCCC----cccchhh
Confidence 0156666677777777889999999998665 4446678999999884 3567889
Q ss_pred EEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 678 QIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 678 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
++.+...+.......... ...+....+|.|-..|.++..+....+.+.....+...+-
T Consensus 196 kl~~~~~d~~~~~~v~~~-~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 196 KLLHLDPDTGYEISVTLT-PPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred hhhhcCCcccceeeeecc-CCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 998877544444443333 3344555678888889888888887777666666655443
|
|
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.019 Score=49.77 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=47.5
Q ss_pred eEEeCCCcEEE-EEECCCCCCCCeEEEEeCCEEee-----cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 15 QRVAAGDTALL-ECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 15 ~~v~~G~~v~L-~C~~~~g~P~~~v~W~k~g~~l~-----~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+.+.+|+.+.+ .|.+..|.|.++|.|+.+..... ...++.++.. ..|.+...+..|.-.++|++.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCCcEEEEEEeCcc
Confidence 56789999999 99998999999999998632221 1112233322 356666666666679999998764
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.066 Score=46.58 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=40.1
Q ss_pred eeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..++..+|.|.+.|+-+. .+.|.++|..+... ........+.+++ +.|.+. ..+...|+ |.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~----~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~yt-C~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG----VSETRYYPRQDLSFQKFSYLNFT---PEEGDIYS-CIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc----eEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEE-EEEEeCC
Confidence 346668999999985443 67999999875311 1111222333342 244444 35667899 9987764
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.037 Score=48.16 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=39.2
Q ss_pred CCCcEEEEEEEcc----CceEEEEECCEEcCCC---CcEEEecCceEEEe---ccCCCCCeEEEEEEEcC
Q psy574 307 LRSEARLRCQVRG----EGSVQWWRGEREVGSG---PRVNVTGDGSLVLT---DVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 307 ~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~---~~~~~~~~~sl~I~---~v~~~d~G~Y~C~a~n~ 366 (977)
.++..+|.|.+.+ ...+.|.+||..+..+ .......++++.+. .+.+.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 4566899999999 3468999999987553 12223344543332 23344566899998764
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.052 Score=47.34 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=42.7
Q ss_pred eCCeEEEEEEE-ecCCCCeEEEEEcCeee--eecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 202 VGRDAVFLCGI-EGSPPPSTFWMLEGNRS--LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 202 ~G~~v~L~C~~-~g~p~~~i~W~~~g~~~--~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
......+.|.+ .|.|.+.|.|+++.... ........+.+.+. +.|.+.....+|.-.|+ |++.+..-...
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~------S~l~~~p~~~d~G~~~t-C~v~h~~l~~~ 86 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVT------SEYRLVPSREANGKELT-CVVSHPTLQEP 86 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEE------EEEEEecCHHHCCCEEE-EEEeCcccCCC
Confidence 34456789999 67899999999972111 00001112222222 37777766666777788 99999865443
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=47.35 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=41.7
Q ss_pred cCCCcEEEEEEEcc----CceEEEEECCEEcCCC--CcEEEecCceEEEe---ccCCCCCeEEEEEEEcC
Q psy574 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSG--PRVNVTGDGSLVLT---DVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 306 ~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~--~~~~~~~~~sl~I~---~v~~~d~G~Y~C~a~n~ 366 (977)
..|....|.|.+.+ ...+.|++||..+... ..+....++++.+. .+.+.+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34667799999999 3468999999988622 12223445555443 34566777899998764
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.011 Score=53.39 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=49.6
Q ss_pred ccceec-ccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCC-ceEEEecC-c------EEEEcCCCCCC-Ce
Q psy574 6 EEFRVQ-PKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDG-T------NLAIQDSRKTD-DG 74 (977)
Q Consensus 6 ~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~-~r~~~~~~-g------~L~I~~v~~~D-~G 74 (977)
|.+.+- |....+.+++.++|.|.+...+|. ..|.|+|||+.+..... ......++ | .|.|...+..| ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 344443 434455578889999999555777 48999999998743211 11122222 3 36665444444 45
Q ss_pred EEEEEEEecCc
Q psy574 75 RYQCVVKNVAG 85 (977)
Q Consensus 75 ~Y~C~a~n~~g 85 (977)
.|+|++.....
T Consensus 83 ~ytC~V~H~g~ 93 (115)
T cd05769 83 TFTCIVQFYGG 93 (115)
T ss_pred eEEEEEEEeCC
Confidence 99999987643
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0061 Score=64.49 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=67.2
Q ss_pred EeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCc
Q psy574 554 PMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL 631 (977)
Q Consensus 554 ~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~ 631 (977)
....++++|+|+.| ......||.++....+ +.++....+ +..+.++|.+|.-++.|.-+|.++|+.|.++.|+.
T Consensus 449 ~t~nns~t~~wkqp~~~~~~~dg~~leld~g~-~g~frevy~---g~etmctvdglhfns~y~arvka~n~tg~s~ys~t 524 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYV---GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT 524 (699)
T ss_pred hccCCceEEEeecCCCCCCCCcceEEEeecCC-CCceeEEEe---cCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence 45678999999955 6678899999987654 344444333 67789999999999999999999999999999999
Q ss_pred eEEeccCC
Q psy574 632 RAVRTLEC 639 (977)
Q Consensus 632 ~~~~T~~~ 639 (977)
+..+|.+-
T Consensus 525 l~lqts~v 532 (699)
T KOG4367|consen 525 LVLQTSEV 532 (699)
T ss_pred eEeeecce
Confidence 98888764
|
|
| >PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.042 Score=49.25 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=54.6
Q ss_pred EEeeEeCCCeEEEEEEecC-----CCc---------cceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEE
Q psy574 550 TEVKPMTSTSVKLTWEILN-----TDY---------IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p~-----~~~---------i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 615 (977)
+.+ ....++|.|.+.+|. +.. -..|.|.|++.+.. ...... ......+.|.+|.|++.|.|
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~--~~~~~~~~l~~L~p~t~YCv 82 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEI--ETKNSSVTLSDLKPGTNYCV 82 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEE--ESSSEEEEEES--TTSEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEE--eecCCEEEEeCCCCCCCEEE
Confidence 555 778889999999993 111 13599999998854 112222 24556779999999999999
Q ss_pred EEEEee--cceeCCCCCceEEec
Q psy574 616 FLVPFF--GSVDGKPSNLRAVRT 636 (977)
Q Consensus 616 ~V~a~n--~~g~g~~s~~~~~~T 636 (977)
+|++.. ....|.+|....++|
T Consensus 83 ~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 83 SVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEeccCCCcCCCCCCEeEeC
Confidence 999933 244567777776665
|
They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T .... |
| >COG3401 Fibronectin type 3 domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.59 Score=49.31 Aligned_cols=248 Identities=12% Similarity=0.060 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEEEccCCCCeEEEEEEEEcCC
Q psy574 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTVTNLTVGLTYTFLVRALNSH 488 (977)
Q Consensus 411 ~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 488 (977)
+..+.+-|.+..+ -+.-.|.|+....+.. ..... ...-.-.+.-.+|.++..|.+.|.|.+..
T Consensus 83 ~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~------------f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~ 147 (343)
T COG3401 83 PKSVKVFWSPHPD---VSVGKYIIQRQNGDGK------------FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQ 147 (343)
T ss_pred cceeeecccccCC---CCCCeEEEEEecCchh------------hhhhhHHHhccchhheecccccccceeeeEEeeccc
Confidence 4458899988765 4556799987544321 11111 11112234566999999999999998865
Q ss_pred CCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecC
Q psy574 489 GLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN 568 (977)
Q Consensus 489 G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~ 568 (977)
+.-..| +..-...+.. .|..+.++++.....+.+.|+|+.+.
T Consensus 148 ~~~sfs-----f~gVE~~~~~---------------------------------~P~ei~~~~~~~d~~~~i~ls~dg~~ 189 (343)
T COG3401 148 MGKSFS-----FTGVEATPKA---------------------------------EPKEITNVRVSFDLGNNIELSEDGSE 189 (343)
T ss_pred ccceee-----eeeeeccccc---------------------------------CCceeeeeeeecCCCCcceeeccCcc
Confidence 543222 1111222211 12234677888888999999999873
Q ss_pred CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee-cceeCCCCCceEEeccCCCCCCCCce
Q psy574 569 TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF-GSVDGKPSNLRAVRTLECEPSGVPQL 647 (977)
Q Consensus 569 ~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n-~~g~g~~s~~~~~~T~~~~P~~~P~~ 647 (977)
... .|+|+=...+ ..++....... .+...-...+| +-.|...|.+.. ..+++..+...++....+.|. .|..
T Consensus 190 ~~~--yy~IY~~~~g-~e~~~~ia~t~-~n~y~d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e-~pt~ 262 (343)
T COG3401 190 AED--YYRIYASDSG-NEEYGFIAQTT-ENSYYDVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYE-VPTI 262 (343)
T ss_pred ccc--eEEEeccCCc-cccccceeecc-ccchhhhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcc-cccC
Confidence 222 5666544433 23332222211 22222333344 666666777665 456677776555544334333 2211
Q ss_pred eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC
Q psy574 648 TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 648 v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 726 (977)
.. .....+.+.|.|+.-+ . -....|.+.-.+.+ ... .......+......+.++..|.+.|.|...+|...
T Consensus 263 ~g-~t~~~s~i~V~~E~~~--~--~~av~ytvyr~~~g-~~~--~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 263 PG-ETTEASFIGVAAEQNQ--L--RQAVTYTVYRVEDG-TPT--KFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred CC-ceeeeeeeeEEecccc--c--ceeeEEeeeeccCC-Ccc--eeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 11 2223455678887652 1 12345555432311 111 11222456667788899999999999999988654
|
|
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.091 Score=45.78 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred eeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|+.++|.|.+.|+-++ .+.|+++|..+... ........+.+|+ +.|.+ ...+...|+ |.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~----~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ys-C~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG----VVSTELIPNGDWTYQILVMLET---TPSRGDTYT-CVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC----ceecceEECCCCcEEEEEEEEE---cCCCCCEEE-EEEEeCC
Confidence 368889999999985444 67999999875321 0111222222332 13333 345677899 9988765
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
..
T Consensus 84 l~ 85 (94)
T cd05766 84 LQ 85 (94)
T ss_pred CC
Confidence 43
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.02 Score=48.74 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=42.5
Q ss_pred CCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEE-ecCc------EEEEcCCCCCCCeEEEEEEEecC
Q psy574 19 AGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRL-VDGT------NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~-~~~g------~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.++.++|.|.+....|.. .|.|++||+.+.......... ..+| .|.+. ..+...|+|++.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 389999999995556754 799999999884222111112 2344 35555 556669999998764
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.057 Score=48.85 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCC-------ccccEEEEEccCCceEEEEeecccCC-CCe
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTA-APL 264 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~ 264 (977)
|....+..+..++|.|.+.++-+. .+.|++||..+...... ..+.|+.. +.|.|...+..+ ...
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~------S~L~v~~~~w~~~~~~ 83 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS------SRLRVSATEWFNPRNT 83 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE------EEEEEChHHhccCCCe
Confidence 334445567789999999885444 78999999875321100 00222222 366666554433 678
Q ss_pred EEEEEEEcCCCcee
Q psy574 265 IILCLGVNAAGSDL 278 (977)
Q Consensus 265 Y~~C~a~n~~g~~~ 278 (977)
|+ |.+........
T Consensus 84 yt-C~V~H~g~~~~ 96 (115)
T cd05769 84 FT-CIVQFYGGTDT 96 (115)
T ss_pred EE-EEEEEeCCccc
Confidence 99 99988765554
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.016 Score=50.51 Aligned_cols=71 Identities=13% Similarity=0.307 Sum_probs=41.3
Q ss_pred ccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceE------EEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRL------RLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~------~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|....+..++.++|.|.+...+|. ..|.|+|||+.+..+..... +......|.|..-. ....|+|.+....
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 333445557889999999555664 47899999998742211000 11111234444322 2336999998743
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.026 Score=43.34 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=35.1
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
....|.|-++..+|+|+|.|..+|..-...-++.|+|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 56789999999999999999999987778888888887443
|
|
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.029 Score=43.09 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=31.6
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC
Q psy574 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 59 ~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P 100 (977)
.+..|.|-++..+|+|.|.|..+|..-.. ...+.|+|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeecc
Confidence 45679999999999999999999765443 345677776543
|
|
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.021 Score=50.67 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=41.2
Q ss_pred eEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCceEE---e-c---cce------EEEccCccCCCeEEEEEEEeC
Q psy574 109 TTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRMSV---L-P---SRS------LQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~~~~---~-~---~~~------L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
..+..|+.++|.|.+.|. |. ..++|+|++..+....... . . +++ |.|..-...+...|+|.+...
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 334457889999999875 43 4689999998875322100 0 1 233 444333334567899999875
Q ss_pred C
Q psy574 174 V 174 (977)
Q Consensus 174 ~ 174 (977)
.
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 4
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.026 Score=44.58 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=38.2
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+.|.|.|.+. ..|.|++ |..+... .+.+|.+-.+..+-.|.|+|.+.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence 356799999762 4699999 5544321 257788999999999999999876
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=44.06 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=37.3
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
...+.|.|+|.. ..+|.|+| |..+.... +.+|.+.....+=.|.|+|.+.+
T Consensus 4 e~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNG-----ATNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecC-----CCcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence 345689999965 25699999 65552211 45677888888889999999875
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.13 Score=44.63 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=35.9
Q ss_pred CceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 52 SKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 52 ~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
..|+.+. ++..|.|..+++.|+|.|.-++++..|......+.+.|.
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3566655 467899999999999999999999999887777777664
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.039 Score=47.59 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred EeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCc-eEEE---e-cCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 17 VAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSK-RLRL---V-DGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~-r~~~---~-~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
+.+|+.+++.|.++...|. ..|.|+|++..+..+.-. .+.. . ....+.|.-. .+|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 5899999999999877887 689999987777432210 0000 0 1124555554 66666 999999754
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.15 Score=44.25 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=46.8
Q ss_pred EEeeCCeEEE-EEEE-ecCCCCeEEEEEcCeeee--ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 199 RLEVGRDAVF-LCGI-EGSPPPSTFWMLEGNRSL--IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 199 ~v~~G~~v~L-~C~~-~g~p~~~i~W~~~g~~~~--~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.+.+|+.+.+ .|.+ .|.|.+.|.|+.+..... .......+.+++.. .|.+.....+|.-.++ |++.+..
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vt-C~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTS------EYIWVPSRHANGHPLT-CVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEE------EEEEEeCHHHCCcEEE-EEEeCcc
Confidence 5678888888 8877 678999999998743211 00111233444443 6777666667777788 9998875
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
-.
T Consensus 85 l~ 86 (97)
T cd07704 85 LQ 86 (97)
T ss_pred cC
Confidence 43
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.078 Score=46.24 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=40.7
Q ss_pred eCCCceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCC---cEEEecCceEEEe---ccCCC-CCeEEEEEEEcC
Q psy574 298 FGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGP---RVNVTGDGSLVLT---DVTKE-DSGEYTCVVKSP 366 (977)
Q Consensus 298 ~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~---~~~~~~~~sl~I~---~v~~~-d~G~Y~C~a~n~ 366 (977)
..|....+..+..++|.|.+.+ ...+.|++||..+..+. ......+ ++.+. .+.+. ....|+|.+...
T Consensus 6 ~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 6 FSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred ECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEEC
Confidence 3444455556778999999999 34689999999875431 1111222 43321 23333 233499998763
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.13 Score=44.76 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=41.7
Q ss_pred CeEEEEEEEe-cCCCCeEEEEEcCeeee--ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 204 RDAVFLCGIE-GSPPPSTFWMLEGNRSL--IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 204 ~~v~L~C~~~-g~p~~~i~W~~~g~~~~--~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
....+.|.+. |.|.+.|.|+++..... .......+.+++. +.|.+.....+|...|+ |++.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~------S~l~~~P~~~d~Gk~lt-C~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVT------SEYSLVPTPEANGKEVT-CKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE------EEEEEecCHHHCCCEEE-EEEeCcccCCCeE
Confidence 4568899875 78899999999732110 0000111222222 36777666666666777 9999986544333
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.067 Score=48.82 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=47.4
Q ss_pred eCCCeEEEEEEecc-----cCceEEEEEECCeeCCC-----Cce--------EE----eccceEEEccCccCCCeEEEEE
Q psy574 112 SASSIIVFECSVGG-----DAVLTVHWKRLGSAMPE-----DRM--------SV----LPSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 112 ~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~-----~~~--------~~----~~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
.-+++|.|.|.+.. .+...|.|..++..+-. .+. .+ ..+.+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 46889999999954 24567999999886521 111 01 02345888776554 8999999
Q ss_pred EEeCCeeEEEEEEEEEe
Q psy574 170 AENAVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V~ 186 (977)
+.......+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99988888888888764
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.027 Score=51.37 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=41.9
Q ss_pred EeCCCcEEEEEECCC----CCCCCeEEEEeCCEEeecCCC--ceEE--------Ee----cCcEEEEcCCCCCCCeEEEE
Q psy574 17 VAAGDTALLECGPPR----GHPEPTLVWKKNGHPIDFENS--KRLR--------LV----DGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 17 v~~G~~v~L~C~~~~----g~P~~~v~W~k~g~~l~~~~~--~r~~--------~~----~~g~L~I~~v~~~D~G~Y~C 78 (977)
..=.++|.|+|.+.. ..+...|.|+.+|+.+..-++ .+.. +. .+.+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 445789999998821 124467999999998742211 1111 11 1234777664333 899999
Q ss_pred EEEecCceeeeEeEEEEE
Q psy574 79 VVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V 96 (977)
.+.....+.+ ..+.|..
T Consensus 103 eVt~~~~ege-~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGE-TTIELKY 119 (130)
T ss_dssp EEEETTEEEE-EEEEEEE
T ss_pred EEEecCCCce-EEEEEEE
Confidence 9987655433 3344444
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.25 Score=41.85 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=41.5
Q ss_pred eCCeEEEEEEEecCCC-C-eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 202 VGRDAVFLCGIEGSPP-P-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~-~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
.+..++|.|.+.++.+ . .|.|+++|..+.. ...........+|. +.|.+. ..+...|+ |.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~----~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ys-C~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE----GVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYS-CRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETT----TEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEE-EEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeee----eeeecccccccccceeeeEEEEec---CCCCCEEE-EEEEECCC
Confidence 3889999999988544 3 6899999987531 11111111122343 245555 56666899 99987654
Q ss_pred c
Q psy574 276 S 276 (977)
Q Consensus 276 ~ 276 (977)
.
T Consensus 79 ~ 79 (83)
T PF07654_consen 79 P 79 (83)
T ss_dssp S
T ss_pred C
Confidence 3
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.15 Score=44.54 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCeEEEEEEeccc-C-ceEEEEEECCeeCCCCce---EEec-cce------EEEccCccCCCeEEEEEEEeCC
Q psy574 113 ASSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM---SVLP-SRS------LQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 113 ~G~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~~---~~~~-~~~------L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.++.++|.|.+.|+ | ...++|+|||.. ..+.. .... +++ |.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 56679999999875 4 457899999987 32211 1111 333 3333322223567999998764
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.28 Score=42.79 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=39.7
Q ss_pred eCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCC------ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 202 VGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGD------RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~------~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
.++.++|.|.+.++-+. .+.|+++|.. ...... ..+.|+.. +.|++...+......|+ |.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~------s~L~v~~~~w~~~~~yt-C~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTAS------SQLTVPASEWKGKESFY-CKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEE------EEEEEeHHHcCCCCcEE-EEEEeC
Confidence 46679999999986443 6789999986 211000 02223222 25666554433466799 998876
Q ss_pred C
Q psy574 274 A 274 (977)
Q Consensus 274 ~ 274 (977)
.
T Consensus 87 ~ 87 (95)
T cd04985 87 S 87 (95)
T ss_pred C
Confidence 4
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.34 Score=42.87 Aligned_cols=78 Identities=5% Similarity=-0.054 Sum_probs=58.5
Q ss_pred eEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccce-----EEEC--CCCCCcEEEEEE
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG-----FLVT--GLAHYSRYEFFL 617 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~-----~~i~--~L~p~t~Y~~~V 617 (977)
.++++.+...+...+++.|++. ....-+.|++.|...+ ..|............+ +.+. +..-++.|.|+|
T Consensus 10 ~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V 87 (104)
T PF09067_consen 10 KPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQV 87 (104)
T ss_dssp CCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEEE
T ss_pred CCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEEE
Confidence 3578999999999999999999 3333445999999876 5677666554333344 5555 789999999999
Q ss_pred EEeeccee
Q psy574 618 VPFFGSVD 625 (977)
Q Consensus 618 ~a~n~~g~ 625 (977)
.|.|..|.
T Consensus 88 ~a~~~~~~ 95 (104)
T PF09067_consen 88 EATNALGS 95 (104)
T ss_dssp EEEETTEE
T ss_pred EeccCCCc
Confidence 99988774
|
The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C .... |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.18 Score=44.06 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=45.0
Q ss_pred CCeEEeCCCceeecCCCcEEEEEEEcc-C-c---eEEEEECCEEcCCCCcEEEecCceEEEecc---CC---CCCeEEEE
Q psy574 293 PPVILFGPANQTLPLRSEARLRCQVRG-E-G---SVQWWRGEREVGSGPRVNVTGDGSLVLTDV---TK---EDSGEYTC 361 (977)
Q Consensus 293 pp~i~~~p~~~~v~~g~~~~L~C~~~~-~-p---~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v---~~---~d~G~Y~C 361 (977)
|-+.+.+|.......+..++|.|.+.+ . | .+.|.++|..-..........++++.+... .. .....|+|
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC 83 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFAC 83 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEE
Confidence 334455566666667889999999999 4 4 699999987511001111223454433321 11 22345999
Q ss_pred EEEcCCC
Q psy574 362 VVKSPHG 368 (977)
Q Consensus 362 ~a~n~~G 368 (977)
.+.....
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9987543
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.1 Score=38.98 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=52.6
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceE--EEEEECCeeCCC----CceEEe-ccceEEEccCccCCCeE
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT--VHWKRLGSAMPE----DRMSVL-PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~--i~W~k~~~~l~~----~~~~~~-~~~~L~I~~v~~~D~G~ 165 (977)
.+-|...|..+.++ +..... ..++-.-.....+... ++|..+...... .++.+. .+-.|.|..++.+|+|.
T Consensus 8 VvgiSG~pl~LrP~-~~Qtk~-~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~ 85 (108)
T PF11465_consen 8 VVGISGKPLQLRPS-NIQTKV-YSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGL 85 (108)
T ss_dssp EEEETTS-EEE--S-S---SS-EEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EE
T ss_pred eEEccCCEEEECCC-Ccccee-EEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCce
Confidence 44555666666644 332222 2344444444444443 566655444322 345544 67799999999999999
Q ss_pred EEEEEEeCCeeE-EEEEEEEEe
Q psy574 166 YVCEAENAVGKI-SASATLTVQ 186 (977)
Q Consensus 166 Y~C~a~n~~g~~-~~~~~L~V~ 186 (977)
|..++++..|.. ...+.+.|.
T Consensus 86 Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 86 YCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEEEEee
Confidence 999999998874 456666664
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.093 Score=53.23 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=39.9
Q ss_pred CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 33 HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 33 ~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
...|.+.|.-.+..+ .....++.+.+.|+|++.+.+++++|.|+|...-
T Consensus 10 ~iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred cCCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence 356889999854443 2456689999999999999999999999998764
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.28 Score=42.43 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=42.3
Q ss_pred EEeCCCeEEEEEEec-ccCc--eEEEEEECCeeCCCCceEE--------eccceEEEccCccCCCe-EEEEEEEeC
Q psy574 110 TVSASSIIVFECSVG-GDAV--LTVHWKRLGSAMPEDRMSV--------LPSRSLQLSDVRLEDAG-EYVCEAENA 173 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~-g~p~--~~i~W~k~~~~l~~~~~~~--------~~~~~L~I~~v~~~D~G-~Y~C~a~n~ 173 (977)
.+.+|..+++.|.+. +.|. ..+.|+|....+....+.- .....+++... .+|.| .|+|+|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 358999999999994 4555 6899999877665432211 12234666554 56666 899999754
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.38 Score=42.94 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=49.0
Q ss_pred cCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeee---ee-------cCCCccccEEEEEcc-CCceEEEEeeccc
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRS---LI-------YPGDRVDNIQAEITS-DGMNLLKIQNVSR 259 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~---~~-------~~~~~~~~~~~~~~~-~g~s~L~I~~v~~ 259 (977)
.+....+..|..++|.|.+.|.... .+.|.|.-... .. ......+++....+. .+.-.|+|.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 3455678889999999999765443 57898853211 00 011124455544432 2346899999999
Q ss_pred CCCCeEEEEE
Q psy574 260 TAAPLIILCL 269 (977)
Q Consensus 260 ~d~G~Y~~C~ 269 (977)
+|.+.|. |.
T Consensus 84 ~DTa~Y~-Ca 92 (115)
T cd05721 84 NQTDIYF-CK 92 (115)
T ss_pred HHCeEEE-EE
Confidence 9999999 85
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.47 Score=41.51 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCCcEEeeCCeEEEEEEEecCC-C--CeEEEEEcCeeeeec---CCCccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSP-P--PSTFWMLEGNRSLIY---PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p-~--~~i~W~~~g~~~~~~---~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
|.......+..++|.|.+.++- + ..+.|.++|..-... ..+.++.|++. +.|.+..-.......|+ |
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~------S~L~v~~~~W~~g~~yt-C 83 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS------SVLPGCAEEWNKGEPFA-C 83 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEE------EEEEeCHHHhcCCCeEE-E
Confidence 4444555788999999998854 2 378999998641100 00112233333 26666644444556699 9
Q ss_pred EEEcCCC
Q psy574 269 LGVNAAG 275 (977)
Q Consensus 269 ~a~n~~g 275 (977)
.+.+...
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9887644
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >KOG4806|consensus | Back alignment and domain information |
|---|
Probab=93.15 E-value=4.9 Score=42.49 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEEEEeecceeCCCCCceEEec---cCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEE
Q psy574 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT---LECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQII 680 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T---~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~ 680 (977)
.+.++..|..++...|+.-. ..--.+...| ..+-|. -|++-++... .-++.+|.|...+.++ ..|-|+
T Consensus 290 vv~~~~~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~gs~d~~-----~kyCIy 362 (454)
T KOG4806|consen 290 VVLPGERYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNGSPDEE-----LKYCIY 362 (454)
T ss_pred EecCCCceEEEEEecCCchh-hheeEeeeecccccCcCCC-CCCCceEeeeccccchheeeeccCcchh-----eeEEEE
Confidence 56788889999888875432 1111122222 223444 5566665543 4467999998775332 245554
Q ss_pred EEecCC-------------c---ceEEE-------------EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 681 VGGGNN-------------S---ALINM-------------TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 681 ~~~~~~-------------~---~~~~~-------------~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
.+...+ + ..... ...-+...-+|.||.||.+|.+.|.|.-..|...+=+.+
T Consensus 363 ~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~ 442 (454)
T KOG4806|consen 363 VFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQAL 442 (454)
T ss_pred EecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeE
Confidence 433110 0 00000 000112234788999999999999998877776666666
Q ss_pred EEeecC
Q psy574 732 LLSLTS 737 (977)
Q Consensus 732 ~~~t~~ 737 (977)
.+.|..
T Consensus 443 ~v~t~~ 448 (454)
T KOG4806|consen 443 TVHTAS 448 (454)
T ss_pred EEEech
Confidence 666644
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.27 Score=50.14 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=47.5
Q ss_pred eCCCeEEEEEEeccc-----CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 112 SASSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-----p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
.-++++.+.|.+... ....+.|..++..+-..+.. +..+|.+.... .=.|+|+|+|.+........++|+-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEeccc-cCCCceeEEEeecccCccEEEEEEE
Confidence 458899999998532 35679999999877432211 33557665543 3379999999986655555555543
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=16 Score=39.66 Aligned_cols=107 Identities=11% Similarity=0.275 Sum_probs=67.1
Q ss_pred ceeecCCCcEEEEEEEcc-----CceEEEEECCEEcCC-----------------CCcEEEe---------cCceEEEec
Q psy574 302 NQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGS-----------------GPRVNVT---------GDGSLVLTD 350 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~-----~p~i~W~~~g~~l~~-----------------~~~~~~~---------~~~sl~I~~ 350 (977)
+..+..|..+.|.|...- ...+.|..-|-++.. ...+.+. ..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 455778999999999886 345889876544321 1222222 234799999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccc
Q psy574 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLL 430 (977)
Q Consensus 351 v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~ 430 (977)
+.....|-|.|+|....-..+..--|.| .+.|.+.|..... ....+.
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V--------------------------------~d~V~f~W~~e~~-n~T~V~ 399 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKV--------------------------------ADHVFFKWNTEGD-NETKVA 399 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEe--------------------------------ccEEEEEEEeccC-ceEEEE
Confidence 9999999999999875433322222222 2478999986544 233445
Q ss_pred eEEEEEeecCC
Q psy574 431 GYQVEMYSRPL 441 (977)
Q Consensus 431 ~Y~I~~~~~~~ 441 (977)
-|..++.....
T Consensus 400 Cyv~sy~~kp~ 410 (500)
T PHA02914 400 CYAAQYDMQPF 410 (500)
T ss_pred EEEEecccCCc
Confidence 56666644433
|
|
| >COG3401 Fibronectin type 3 domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.5 Score=44.78 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=96.5
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
-+..+.+-|.+-+.-....|.|+-...+. . ..........-...+.-++|.++..|...|.+.+..+.-..+ +.
T Consensus 82 ~~~~~~~~w~~~~d~~~~~Y~i~~~~gD~-~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs----f~ 155 (343)
T COG3401 82 RPKSVKVFWSPHPDVSVGKYIIQRQNGDG-K-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS----FT 155 (343)
T ss_pred CcceeeecccccCCCCCCeEEEEEecCch-h-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee----ee
Confidence 34569999999877777889998776653 1 222111111223455666899999999999998765543333 22
Q ss_pred ccCCCCCCCC---ceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeE--EecCCCCCc
Q psy574 636 TLECEPSGVP---QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL--LLTNLSAGI 710 (977)
Q Consensus 636 T~~~~P~~~P---~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~--~l~~L~p~t 710 (977)
-.+..|...| .++++.....+.+.|+|+.++ ..+ .|+|+-.... ............+++ ...+| |.
T Consensus 156 gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~--~~~----yy~IY~~~~g-~e~~~~ia~t~~n~y~d~~egl--ga 226 (343)
T COG3401 156 GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSE--AED----YYRIYASDSG-NEEYGFIAQTTENSYYDVKEGL--GA 226 (343)
T ss_pred eeecccccCCceeeeeeeecCCCCcceeeccCcc--ccc----eEEEeccCCc-cccccceeeccccchhhhhhcc--Cc
Confidence 2233332233 345555556678999999983 333 7777544422 222222222233333 34455 77
Q ss_pred eEEEEEEEEc-CCCcCCCCCceEEe
Q psy574 711 RYSVSLAATN-RAGTGPYSRPALLS 734 (977)
Q Consensus 711 ~Y~~~V~A~~-~~G~g~~S~~~~~~ 734 (977)
.|...|.++- ..+.+..+.+....
T Consensus 227 ~~~y~VTtVd~~~~es~lp~~~t~~ 251 (343)
T COG3401 227 VEYYKVTTVDNTGFESDLPNEPTVG 251 (343)
T ss_pred eeEEEEEEEcCCcceeccCCccccc
Confidence 7888888876 45567777765543
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.18 Score=55.03 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=71.9
Q ss_pred eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE---cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML---EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 190 ~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~---~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.+..-|....+..+++++++|.+.|.+.+.|.|.+ ++..+.+.+....++..+.. +..|.|-+....|+|.|+
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vts----tcql~ic~ewq~~a~w~t 273 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTS----TCQLVICNEWQADAGWYT 273 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceee----eeeEEEcchhhcCCCcee
Confidence 34444566688899999999999999999999986 45555555555555544443 238999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEEC
Q psy574 267 LCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.+.+.+|.....+.+.+.-
T Consensus 274 -Cs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 274 -CSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred -eccccccceeeccceeeeec
Confidence 99999999888777666543
|
|
| >KOG3632|consensus | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.2 Score=53.21 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..+..|.++++-+++.++..++|-+-.. +- -++.|....... ........+++.+|.|+
T Consensus 670 ~a~vvpsqlrv~n~tqtSa~itwvp~ns--n~----~Hviyln~eE~~---------------ps~a~~y~ytf~~lrpg 728 (1335)
T KOG3632|consen 670 AAPVVPSQLRVWNATQTSAMITWVPFNS--NF----LHVIYLNAEEPR---------------PSVAEMYNYTFMRLRPG 728 (1335)
T ss_pred cccccchhhhhhhhhchhhheeeeecCC--Cc----ceeeecCCccCC---------------CchhhhhHHHHhccCCC
Confidence 4578899999999999999999987655 11 123332211110 01222345678899999
Q ss_pred CeEEEEEEEEcC-CC-----CCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEE
Q psy574 476 LTYTFLVRALNS-HG-----LSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIEL 549 (977)
Q Consensus 476 t~Y~~~V~a~n~-~G-----~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~ 549 (977)
+.|..+|-+.-. .+ .-.++....++. ...|..|++-++.+
T Consensus 729 t~y~a~vea~~p~q~pwdl~~v~~etr~atv~----------------------------------f~tLpAGppappld 774 (1335)
T KOG3632|consen 729 TDYWASVEAALPRQEPWDLRMVPMETRQATVL----------------------------------FRTLPAGPPAPPLD 774 (1335)
T ss_pred CccceecccccCcCCCcccccchhhhhcccee----------------------------------eecccCCCCCCchh
Confidence 999999977543 11 111111111111 11222233444455
Q ss_pred EEeeE-eCCCeEEEEEEec--------CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCC-CcEEEEEEEE
Q psy574 550 TEVKP-MTSTSVKLTWEIL--------NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAH-YSRYEFFLVP 619 (977)
Q Consensus 550 l~~~~-~~~tsv~lsW~~p--------~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~a 619 (977)
+.+.. .+++.+.++|.|| ++-.+++|.|+-.... ...........+.+.+..|.- ...=.|.|+.
T Consensus 775 V~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadgqk-----v~Evafptagst~VelsQlq~~l~~~~V~vRt 849 (1335)
T KOG3632|consen 775 VKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADGQK-----VEEVAFPTAGSTKVELSQLQDGLYHGAVGVRT 849 (1335)
T ss_pred eeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCCce-----eeeeecccCCceEEEeeeehhhheecceeEEe
Confidence 66654 6788999999999 4556789999864221 111111224445566666665 5555677777
Q ss_pred eecceeCCCC
Q psy574 620 FFGSVDGKPS 629 (977)
Q Consensus 620 ~n~~g~g~~s 629 (977)
..--|++..|
T Consensus 850 ms~~gesvds 859 (1335)
T KOG3632|consen 850 MSVPGESVDS 859 (1335)
T ss_pred cccCcccccc
Confidence 6666665443
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=2.1 Score=41.84 Aligned_cols=116 Identities=18% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC--------------------CceEEe---ccceEEEccCccC
Q psy574 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE--------------------DRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~--------------------~~~~~~---~~~~L~I~~v~~~ 161 (977)
..++....++.|.|.|.. .++......|+++....-. ..+... ..++|+|.++..+
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~ 110 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence 345566789999999997 4455667899987543211 011111 4578999999999
Q ss_pred CCeEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeC-CeEEEEEEEecCCCCeEEEEEcCe
Q psy574 162 DAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVG-RDAVFLCGIEGSPPPSTFWMLEGN 227 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G-~~v~L~C~~~g~p~~~i~W~~~g~ 227 (977)
..|=|+|++....+..+ ..--|.|+..-.+. ...++ ..-.+.|-+-+...+-..|..+|.
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 99999999987655432 24445553211111 12223 334678988666555448988875
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.28 Score=53.65 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC---CeeC--C----CCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL---GSAM--P----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~---~~~l--~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+..-|....+..+++..++|-+.|.+.+.|.|.+. ...+ . .++..+.....|.|-+....|+|.|+|.+.+
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 44456667888999999999999999999999874 2221 1 1233334556799999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy574 173 AVGKISASATLTVQ 186 (977)
Q Consensus 173 ~~g~~~~~~~L~V~ 186 (977)
..|...+.+.+.+.
T Consensus 279 g~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 279 GAGFLRRDVPCSSV 292 (560)
T ss_pred ccceeeccceeeee
Confidence 99998888888776
|
|
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=9.3 Score=42.29 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=31.2
Q ss_pred CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEE
Q psy574 52 SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVL 97 (977)
Q Consensus 52 ~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~ 97 (977)
..|+... |++|.|.+++.+|+|.|+-.+..... ......+.|.|.
T Consensus 116 ~~rvs~~-n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 116 PPRVAVV-NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred CcceeEe-cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 3466666 77899999999999999998754322 223344556664
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.75 Score=50.74 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 469 i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
-.+|.+++.|+|+|.|.|..|.+++|......+-
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc 684 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC 684 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeec
Confidence 4678999999999999999999988876665544
|
|
| >PF15102 TMEM154: TMEM154 protein family | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.37 Score=44.44 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHHHheeeEEEEeecc
Q psy574 786 AVMALLFLAMFFVRRRTL 803 (977)
Q Consensus 786 ~lll~i~~~~~~~~rr~~ 803 (977)
+|||+++++++++||||.
T Consensus 70 lLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHheeEEeeccc
Confidence 334444444444455544
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.45 Score=48.45 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=40.1
Q ss_pred CceEEEEEC-CEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcC
Q psy574 320 EGSVQWWRG-EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 320 ~p~i~W~~~-g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~ 366 (977)
.|.+.|..+ |..+....++.+++.|.|.+.+.+..++|.|+|...-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 578999875 55566668999999999999999999999999987643
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.5 Score=44.89 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=40.6
Q ss_pred CCCcEEEEEECCCCCC------CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 19 AGDTALLECGPPRGHP------EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P------~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
=.+++.++|.+ .++ +..|.|+.||+.+...+.. ...+|++.. ..+=.|+|+|+|.+...+
T Consensus 30 CN~TV~IpC~v--~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f-~~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNL--NLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNF-SKNLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeec--CChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEec-cccCCCceeEEEeecccC
Confidence 36889999988 333 4579999999998533221 123466643 344489999999875543
|
|
| >PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.5 Score=38.73 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceec----Cc-----Ce
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV----PS-----PI 466 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~-----~~ 466 (977)
.+|+.|.++.+.......+++-|.++.. ++. ...|.+.|.... . .|....... .+ ..
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~-~~l-~~~y~L~Y~~~~-~-----------~~~eCp~~~~~~~ns~~~~~C~ 71 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSE-GNL-PTNYTLFYKKEG-E-----------EWKECPDYSTSGPNSTVRHICY 71 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESS-STS-TCEEEEEEEETT-S-----------EEEEESESSTTETTEEEEEEEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCC-CCC-CCcEEEEEEeCC-C-----------CCccCCCeEecCCCCceeEEEE
Confidence 4688899999998888899999999887 332 344999998765 2 677665221 22 33
Q ss_pred EEEEccCCCCeEEEEEEEEcCCCC
Q psy574 467 LTVTNLTVGLTYTFLVRALNSHGL 490 (977)
Q Consensus 467 ~~i~~L~p~t~Y~~~V~a~n~~G~ 490 (977)
|.-.+..-++.|.++|.|.|..|.
T Consensus 72 F~~~~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 72 FPKSDTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp E-CCGCSSSSEEEEEEEEEETTEE
T ss_pred cCCCCeEEEEEEEEEEEeccCCCc
Confidence 344588999999999999997764
|
The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C .... |
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.8 Score=37.11 Aligned_cols=66 Identities=21% Similarity=0.405 Sum_probs=46.4
Q ss_pred CCCceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCCCceEEeccc--eEEEccCccCCCeEEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSR--SLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a 170 (977)
.|+...+..|+.+++.|.... .....|.|+.++..++.+++....++ ++++.+......-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 355667899999999999832 35668999999999999999888765 4556665555555666653
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >KOG4228|consensus | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.84 Score=55.80 Aligned_cols=106 Identities=11% Similarity=0.000 Sum_probs=62.7
Q ss_pred eEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 553 KPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 553 ~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
...+.++++++|.++....+..|++.+...+.. ....... ....+....++.|-..|.++..+....+.+.....+
T Consensus 173 ~~~~~~~it~~w~~~~~~~~~~ykl~~~~~d~~--~~~~v~~--~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i 248 (1087)
T KOG4228|consen 173 EEEEYTTITGSWSPPHAVSLDTYKLLHLDPDTG--YEISVTL--TPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEI 248 (1087)
T ss_pred cceEEEEEEecCCCCCcccchhhhhhhcCCccc--ceeeeec--cCCCCCcccCCCCcccccccccCccccccCCCCcce
Confidence 556778999999999888888899888766421 1111111 233445556677777787777776666655555556
Q ss_pred EEeccCCCCCCCCceeEEEEecCcEEEEEeeCC
Q psy574 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP 665 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p 665 (977)
.+++...+ ...+........+.+..+|..+
T Consensus 249 ~~r~~~s~---~~~~~~~~~~~~~~~~~t~~~~ 278 (1087)
T KOG4228|consen 249 EARQLQSV---SKKNFETKHVFKNLVPGTWESF 278 (1087)
T ss_pred EEEehhhh---hccccccceeecccCCceeeee
Confidence 66655542 1122222233344455555544
|
|
| >PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.76 Score=49.98 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=14.2
Q ss_pred eEEEEEEEEcCCCcCCCCCc
Q psy574 711 RYSVSLAATNRAGTGPYSRP 730 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~ 730 (977)
...++|+|+...+.+ |+..
T Consensus 243 ~~~lqvQaF~~~~~~-Fg~a 261 (306)
T PF01299_consen 243 LSDLQVQAFRVKNNT-FGTA 261 (306)
T ss_pred EeEEEEEEEEecCCC-CCCh
Confidence 567899999887666 7654
|
Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane |
| >PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=88.63 E-value=7 Score=34.31 Aligned_cols=80 Identities=10% Similarity=-0.067 Sum_probs=55.8
Q ss_pred EEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeec-CccceEEECCCCC----CcEEEEEEEEe
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHA-GEASGFLVTGLAH----YSRYEFFLVPF 620 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p----~t~Y~~~V~a~ 620 (977)
+++|.+...+...|..+|++. ....-+.|.++|+................ +....+.+..... +..|.|.|...
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~s 81 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGS 81 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEec
Confidence 478999999999999999997 44455789999999764333333333222 2345666666555 46899999988
Q ss_pred ecceeC
Q psy574 621 FGSVDG 626 (977)
Q Consensus 621 n~~g~g 626 (977)
+..|.-
T Consensus 82 s~~~~i 87 (99)
T PF09240_consen 82 SSAGSI 87 (99)
T ss_dssp ETTEEE
T ss_pred cCCCcc
Confidence 877653
|
They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C .... |
| >COG4733 Phage-related protein, tail component [Function unknown] | Back alignment and domain information |
|---|
Probab=88.24 E-value=4.4 Score=48.07 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=72.2
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCC-ceEEecc-CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeee
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN-LRAVRTL-ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVI 674 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~-~~~~~T~-~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i 674 (977)
.....+.+.+|-+ ..|.++|+|.|..+...... ...|+.. ..+|+..+..+...... -.+.+.|-.| . ..-.+
T Consensus 657 t~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dP--t-~~~d~ 731 (952)
T COG4733 657 TSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDP--T-GAVDI 731 (952)
T ss_pred ccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecC--C-cceEE
Confidence 4567899999998 89999999999988754444 4444432 23343344444444433 3478889877 2 11122
Q ss_pred eEEEEEEEecCCcceEEEEecCCcCeEEe--cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 675 RTYQIIVGGGNNSALINMTVSASTPTLLL--TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 675 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l--~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
..=++++....+.... ...-++.....+ .+|++|..|.|++|+++..|...+-
T Consensus 732 ~~sei~~s~~~d~~~~-Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 732 TSTEIRSAVIADGNFQ-ARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred eeeeeeeeccccchhH-HhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 2222332221111110 111112221122 5899999999999999999875543
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.7 Score=36.03 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=47.5
Q ss_pred eecccceEEeCCCcEEEEEECCCC----CCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.+.|....+..|.+++..|....+ .....|.|+.|++.++ ..+++...++ ++++.+.....+-.|-|...
T Consensus 7 ~i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 7 VISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EEecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 456778889999999999988333 2456899999999773 3456655554 46777776666667777743
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=20 Score=39.78 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=52.8
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc-----CCeEE--------------eCCCceEEeCCCeEEEEE
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYII--------------RGPKDTTVSASSIIVFEC 121 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~-----~P~~~--------------~~p~~~~v~~G~~v~l~C 121 (977)
+.|.|.+++.+++|.|+-...|+.|......+.|.|.. +|... ..+......+|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 46999999999999999999988777666777888842 12111 223444667899997765
Q ss_pred Eec-----ccCceEEEEEEC
Q psy574 122 SVG-----GDAVLTVHWKRL 136 (977)
Q Consensus 122 ~v~-----g~p~~~i~W~k~ 136 (977)
... +.-...|.|++-
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEeecccCCCceEEEEEEEe
Confidence 542 112357899874
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=86.68 E-value=37 Score=34.09 Aligned_cols=133 Identities=14% Similarity=0.264 Sum_probs=65.7
Q ss_pred CeEEEEeCCEEeecCC-CceEEEecCc------EEEE-cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCC
Q psy574 36 PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAI-QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK 107 (977)
Q Consensus 36 ~~v~W~k~g~~l~~~~-~~r~~~~~~g------~L~I-~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~ 107 (977)
..+.|+.||..+.... ..+.....+| +|.+ .+...+-.=..+|.+.-.......+.+ .-...|.+...|.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~~P~ 84 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYPKPR 84 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceecCCE
Confidence 4789999999885322 1222333344 3555 222333344899998765432222211 2222333443332
Q ss_pred ceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCC-ceEEe-----ccceEEEccCc--cCCCe--EEEEEEEe
Q psy574 108 DTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPED-RMSVL-----PSRSLQLSDVR--LEDAG--EYVCEAEN 172 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~-~~~~~-----~~~~L~I~~v~--~~D~G--~Y~C~a~n 172 (977)
-..-.++ -...|.+.--| ...+.|.-++...... ..... ..+...|.+.. ....| .|+|....
T Consensus 85 vsv~F~~--g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 85 VSVRFED--GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEecC--CEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence 2211222 23446653222 3689999887754221 11211 22445555443 23345 89999864
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=2.6 Score=33.18 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=34.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCCEEeecCC---CceEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFEN---SKRLRL 57 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g~~l~~~~---~~r~~~ 57 (977)
.|..+.+..|..++|.|.+.-+.| .+.|.|.-|+..++.++ ++|+..
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence 356688999999999999833333 56899999999995443 455544
|
|
| >PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host [] | Back alignment and domain information |
|---|
Probab=85.41 E-value=0.24 Score=33.82 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHHH
Q psy574 776 WFIALLTSMVAVMALL 791 (977)
Q Consensus 776 ~~i~~v~~~~~lll~i 791 (977)
.+|+.+++++.+++++
T Consensus 7 aIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIIC 22 (38)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444333333333
|
This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=85.18 E-value=4.2 Score=46.24 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeE--------------------EeCCCceEEeCCCeEEE
Q psy574 60 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI--------------------IRGPKDTTVSASSIIVF 119 (977)
Q Consensus 60 ~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~--------------------~~~p~~~~v~~G~~v~l 119 (977)
.|.|.|.+++.+|+|.|.-...+..+......+.|.|..+... +..+.......|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 4679999999999999999998777665555566666642111 12233446678999888
Q ss_pred EEEeccc--C----ceEEEEEEC
Q psy574 120 ECSVGGD--A----VLTVHWKRL 136 (977)
Q Consensus 120 ~C~v~g~--p----~~~i~W~k~ 136 (977)
.-.+.-. . ...|.|++-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 7765211 1 347999884
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5 | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.28 Score=51.63 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=0.0
Q ss_pred eeEEEEecCcEEEEEeeC
Q psy574 647 LTDPVLLNATSVLLKWKP 664 (977)
Q Consensus 647 ~v~~~~~~~~sv~v~W~~ 664 (977)
.+++..++.+++.|+|.-
T Consensus 39 ~ItV~sIt~gstiVtwtN 56 (290)
T PF05454_consen 39 SITVRSITSGSTIVTWTN 56 (290)
T ss_dssp ------------------
T ss_pred eEEEEEecCCCEEEEEEc
Confidence 556666667788888854
|
5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=83.70 E-value=7.9 Score=32.41 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=34.9
Q ss_pred ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEE-EeCCeeEEEEEEEEE
Q psy574 128 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEA-ENAVGKISASATLTV 185 (977)
Q Consensus 128 ~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~g~~~~~~~L~V 185 (977)
.+.+.|+..+.... .....+.+...+.+|+|.+.|.| .+..-.....+.|.|
T Consensus 26 ~~~~~l~~~~~k~~------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSL------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEE------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccc------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45667776655432 13455677888899999999999 666555556666655
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators | Back alignment and domain information |
|---|
Probab=83.48 E-value=3.7 Score=32.80 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+.+++|.|| .|.|+|+|.+..|.-...
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence 8999999999 699999999988765443
|
However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=36 Score=38.65 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=50.2
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCe---------EEeCC------------CceEEeCCCeEEE
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---------IIRGP------------KDTTVSASSIIVF 119 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~---------~~~~p------------~~~~v~~G~~v~l 119 (977)
+.|.|.+++.+++|.|+-...+..+ .....+.|+|..++. ....| ......+|+++.+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 4699999999999999999998766 334556777875211 11111 2335678999988
Q ss_pred EEEeccc---C--ceEEEEEEC
Q psy574 120 ECSVGGD---A--VLTVHWKRL 136 (977)
Q Consensus 120 ~C~v~g~---p--~~~i~W~k~ 136 (977)
.-..... + ...|.|++-
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred eEEEeeccCCCCceEEEEEEEe
Confidence 6655221 2 347999874
|
|
| >KOG1225|consensus | Back alignment and domain information |
|---|
Probab=82.58 E-value=2.5 Score=48.55 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=99.9
Q ss_pred EEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC
Q psy574 549 LTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP 628 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~ 628 (977)
.+.+...+..++.+.|. .....+.|...|...+.+..-. ..........+.+..|.|++.|.++|++.-..-.+.+
T Consensus 371 ~~~~~~cs~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 446 (525)
T KOG1225|consen 371 LLLITECSPPSLCIAGV--GRRRVTHCAGTYCPLGESGGDL--QGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLP 446 (525)
T ss_pred hhcccccCCCceeeccc--cccccccccccccccccCCCcc--ceeeccceeeeeeeeecCCcceeeehhhhhhhhccCC
Confidence 34555667777888888 3333455665555543322212 2233467788999999999999999998865433322
Q ss_pred CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCC
Q psy574 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSA 708 (977)
Q Consensus 629 s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 708 (977)
.. ....|... -+..+.+.....+++.+.|..|. . ...+|++.|.....+-..........+.+..++|.|
T Consensus 447 ~~-~~~~~~~~----~~g~~~v~~~~~~s~e~~g~~~s--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 516 (525)
T KOG1225|consen 447 KD-KSETTVLC----WNGGLCVDGETESSLEVGGPCPS--S---GTCGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGP 516 (525)
T ss_pred cc-cccceEee----cCCceeeeeeeeccccccCCCCC--c---cccceEEEeeecCcccccccCCCCCCCCCCccCccc
Confidence 21 22223332 34577778888899999999984 2 235678877333344344455555778899999999
Q ss_pred CceEEEEE
Q psy574 709 GIRYSVSL 716 (977)
Q Consensus 709 ~t~Y~~~V 716 (977)
++.|.+.+
T Consensus 517 c~~~~~~~ 524 (525)
T KOG1225|consen 517 CTEYEVSV 524 (525)
T ss_pred ccceeccc
Confidence 99998865
|
|
| >PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=82.25 E-value=8.3 Score=33.86 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=51.0
Q ss_pred CCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecC---cCeEEEEccCC---
Q psy574 401 PTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVP---SPILTVTNLTV--- 474 (977)
Q Consensus 401 P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~i~~L~p--- 474 (977)
|.++.+.-.+...+.++|.+... ..+.+.|.+.|+...... ...+...... .....+.....
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~--~~~~t~y~L~~~~~~~~~----------~~eC~~y~~~~~~~~gC~~~~~~~~~~ 69 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKE--APPDTQYTLYYWYSPLEE----------EKECPHYSKDSGTRIGCQFPVSEIDSS 69 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTT--CSTTEEEEEEEEETTSSS----------EEEESEEEESTSSEEEEEEESCTT-TT
T ss_pred CeeCEEEEECCEEEEEEECCCCC--CCCcccEEEEEEcCCCCc----------cccCCCccccCCceeEEEecCCCcccc
Confidence 56777877788899999998776 445689999998865442 2222221111 22334444444
Q ss_pred -CCeEEEEEEEEcCCCCC
Q psy574 475 -GLTYTFLVRALNSHGLS 491 (977)
Q Consensus 475 -~t~Y~~~V~a~n~~G~s 491 (977)
+..|.|.|.+.+..|.-
T Consensus 70 ~~~~~~v~V~~ss~~~~i 87 (99)
T PF09240_consen 70 EFSQYNVCVNGSSSAGSI 87 (99)
T ss_dssp TTSEEEEEEEEEETTEEE
T ss_pred ccceEEEEEEeccCCCcc
Confidence 45899999998877643
|
They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C .... |
| >PRK14081 triple tyrosine motif-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.05 E-value=1.2e+02 Score=36.28 Aligned_cols=357 Identities=12% Similarity=0.104 Sum_probs=185.5
Q ss_pred CCCCCCeEE--EEEEEecCceee---eEeEEEEEE--cCCeE---EeCCCceEEeCCCeEEEEEEecccCceEEEEEECC
Q psy574 68 SRKTDDGRY--QCVVKNVAGTRE---STDAVLRVL--VKPYI---IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG 137 (977)
Q Consensus 68 v~~~D~G~Y--~C~a~n~~g~~~---s~~~~l~V~--~~P~~---~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~ 137 (977)
-.+..+|.| .|.+.+.....+ ......+|. .++.+ .... +.....|+.+.|.+.+.|.-...+...-.|
T Consensus 250 y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~-~s~ql~g~~I~ika~a~GG~~llYrf~I~G 328 (667)
T PRK14081 250 YKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDL-SSPQLTDTDIELKAVAEGGKELLYRFIIKG 328 (667)
T ss_pred EEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcC-CCCeecCceEEEEEEecCCCceEEEEEECC
Confidence 346678877 566665543221 222233343 22222 2222 223468999999999976555555443344
Q ss_pred eeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe----e--EEEEEEEEEeeC---Ce-EE--ecCCCcEEeeCCe
Q psy574 138 SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG----K--ISASATLTVQMA---PI-VR--ERPSDLRLEVGRD 205 (977)
Q Consensus 138 ~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g----~--~~~~~~L~V~~~---p~-~~--~~p~~~~v~~G~~ 205 (977)
..+....+. ....+ +-.+..+|.|.-.+.-... . ....+...|... |. +. ..+.......|+.
T Consensus 329 ~~~e~~~Y~--~~n~~---~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~ 403 (667)
T PRK14081 329 KESEDSGYI--RNNIY---TWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEE 403 (667)
T ss_pred cEEeecccc--ccceE---EEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCe
Confidence 443222211 22233 2345578999887764321 1 344556666643 32 21 2344557888999
Q ss_pred EEEEEEEecCCCCeEE-EEE-cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEE--EcCCCce----
Q psy574 206 AVFLCGIEGSPPPSTF-WML-EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG--VNAAGSD---- 277 (977)
Q Consensus 206 v~L~C~~~g~p~~~i~-W~~-~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a--~n~~g~~---- 277 (977)
+.+.|.+.+.....+. |.+ +|..+....=.... .+.+. +.-+|.|+ ..+ .+.....
T Consensus 404 i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~------------~~~f~---P~~~G~Y~-IeV~vKdk~S~~~yD~ 467 (667)
T PRK14081 404 IKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNN------------WVNFI---PEEKGNYE-LEVRVKDKYSDKEYDA 467 (667)
T ss_pred EEEEEEecCCCeEEEEEEEEECCEEEEEeeccccc------------EEEEE---ECCCeeEE-EEEEEecccCchhccc
Confidence 9999999876544443 444 44433211000011 23332 35678887 433 3333322
Q ss_pred eEEEEEEEECCCCCCCCe-EE--eCCCceeecCCCcEEEEEEEcc--CceEE--EEECCEEcCCCCcEEEecCceEEEec
Q psy574 278 LARASLTVSGPDPNPPPV-IL--FGPANQTLPLRSEARLRCQVRG--EGSVQ--WWRGEREVGSGPRVNVTGDGSLVLTD 350 (977)
Q Consensus 278 ~~~~~l~V~~~~~~~pp~-i~--~~p~~~~v~~g~~~~L~C~~~~--~p~i~--W~~~g~~l~~~~~~~~~~~~sl~I~~ 350 (977)
...+.+.|... .|. +. .-|.......|+.+++.|.+.+ ...+. -+.||..+... . ......+.+.
T Consensus 468 ~k~v~l~V~e~----~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t-~--Ys~~~~ysf~- 539 (667)
T PRK14081 468 HTIVYIKVHEY----IPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET-D--YIKNKKYKFI- 539 (667)
T ss_pred ceEEEEEEecc----CceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe-e--ccccceEEEe-
Confidence 34456777653 233 22 3355566889999999999998 33333 23455544211 0 1122233333
Q ss_pred cCCCCCeEEEEEEEcCCCc------eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCC---CceEEEEEcC
Q psy574 351 VTKEDSGEYTCVVKSPHGS------ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA---NGLTLAWSRN 421 (977)
Q Consensus 351 v~~~d~G~Y~C~a~n~~G~------~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~---~sv~lsW~~p 421 (977)
+..+|.|+..+.-.... ......+.|.++ .|+.+..+..... -.-.++|...
T Consensus 540 --P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-----------------~pi~nt~~~~~~~~~~~n~~~t~~~~ 600 (667)
T PRK14081 540 --PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-----------------LPITNTKIKTSKKKFKCNEEVTFSVK 600 (667)
T ss_pred --ecCCceEEEEEEEcccccccccccceEEEEEEcCC-----------------CCceeeEEEeecceEEcCCeEEEEEE
Confidence 55788888766533332 234555666543 2233333221111 1235667666
Q ss_pred CCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCC
Q psy574 422 NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489 (977)
Q Consensus 422 ~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G 489 (977)
.. ++...-|+...... +.|..+..-....-++..-...| .|.+.|.+....+
T Consensus 601 ~~--gg~~v~Yef~v~~~-------------g~w~~vq~ys~k~~ysf~p~~~g-~Y~ilvl~ks~~~ 652 (667)
T PRK14081 601 SE--GGKDVCYEFYIMEK-------------GEWKLVQKYSRKNYYSFMPFNKG-KYKVLVLCKSYYK 652 (667)
T ss_pred cc--CCCcEEEEEEEEEC-------------CcEEEEeeccccCceEEEeccCC-cEEEEEEEecccc
Confidence 55 33444676665542 38988876666666665544444 4777777755443
|
|
| >PLN02533 probable purple acid phosphatase | Back alignment and domain information |
|---|
Probab=81.49 E-value=12 Score=42.76 Aligned_cols=86 Identities=8% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cc-e-EEEE-------ecCCcCeEEecCCCC
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SA-L-INMT-------VSASTPTLLLTNLSA 708 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~-~-~~~~-------~~~~~~~~~l~~L~p 708 (977)
....|..+++...+.+++.|+|.-.. ... .. |+|..... .. . ...+ ..+....++|++|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~~-~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQD--SIP-PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCC--CCC-CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 33467888888778899999998873 222 22 44433210 00 0 0011 122335689999999
Q ss_pred CceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 709 ~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.|..+|. ....|....|+|.+..
T Consensus 113 ~T~Y~Yrvg------~~~~s~~~~F~T~p~~ 137 (427)
T PLN02533 113 NTVYYYKCG------GPSSTQEFSFRTPPSK 137 (427)
T ss_pred CCEEEEEEC------CCCCccceEEECCCCC
Confidence 999999994 2233666778776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 977 | ||||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 3e-26 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 1e-11 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 4e-07 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 3e-26 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 1e-11 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 4e-07 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 4e-22 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 2e-21 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 3e-19 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 4e-20 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 2e-12 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 5e-18 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 1e-08 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-06 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 9e-18 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 1e-08 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 4e-06 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 1e-17 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 2e-14 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 8e-17 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 7e-13 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 1e-16 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 8e-13 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 1e-16 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 3e-15 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 2e-08 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 2e-05 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 5e-14 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 4e-13 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 7e-14 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 1e-05 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 9e-14 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 6e-07 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 2e-13 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 1e-10 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 4e-13 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 4e-11 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 4e-08 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 7e-06 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 4e-13 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-10 | ||
| 3ojv_C | 226 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 6e-13 | ||
| 3ojv_C | 226 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 2e-07 | ||
| 1cvs_C | 225 | Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L | 7e-13 | ||
| 1cvs_C | 225 | Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L | 2e-07 | ||
| 1evt_C | 225 | Crystal Structure Of Fgf1 In Complex With The Extra | 1e-12 | ||
| 1evt_C | 225 | Crystal Structure Of Fgf1 In Complex With The Extra | 2e-07 | ||
| 2v5s_A | 394 | Structural Basis For Dscam Isoform Specificity Leng | 2e-12 | ||
| 2v5m_A | 388 | Structural Basis For Dscam Isoform Specificity Leng | 3e-12 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 3e-12 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 1e-07 | ||
| 3ojm_B | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 7e-12 | ||
| 3s97_C | 201 | Ptprz Cntn1 Complex Length = 201 | 2e-11 | ||
| 2fdb_P | 220 | Crystal Structure Of Fibroblast Growth Factor (Fgf) | 2e-11 | ||
| 1iil_E | 220 | Crystal Structure Of Pro253arg Apert Mutant Fgf Rec | 2e-11 | ||
| 3oj2_C | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 2e-11 | ||
| 1ev2_E | 220 | Crystal Structure Of Fgf2 In Complex With The Extra | 3e-11 | ||
| 1e0o_B | 219 | Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C | 4e-11 | ||
| 1ii4_E | 220 | Crystal Structure Of Ser252trp Apert Mutant Fgf Rec | 5e-11 | ||
| 1ry7_B | 334 | Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com | 9e-11 | ||
| 1ry7_B | 334 | Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com | 4e-05 | ||
| 1nun_B | 230 | Crystal Structure Analysis Of The Fgf10-fgfr2b Comp | 1e-10 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 2e-10 | ||
| 2v5r_A | 391 | Structural Basis For Dscam Isoform Specificity Leng | 3e-10 | ||
| 2edj_A | 100 | Solution Structure Of The Fifth Ig-Like Domain From | 9e-10 | ||
| 1uem_A | 117 | Solution Structure Of The First Fibronectin Type Ii | 1e-09 | ||
| 3grw_A | 241 | Fgfr3 In Complex With A Fab Length = 241 | 1e-09 | ||
| 1djs_A | 216 | Ligand-binding Portion Of Fibroblast Growth Factor | 2e-09 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-08 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-06 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 3e-06 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 3e-08 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 2e-07 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 4e-06 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-08 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-06 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-06 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-08 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-06 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-06 | ||
| 3lpw_A | 197 | Crystal Structure Of The Fniii-Tandem A77-A78 From | 1e-07 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 1e-07 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-04 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 2e-07 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 3e-07 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 4e-07 | ||
| 1x5h_A | 132 | The Solution Structure Of The Third Fibronectin Typ | 5e-07 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 6e-07 | ||
| 1va9_A | 122 | Solution Structure Of The Second Fniii Domain Of Ds | 7e-07 | ||
| 1ie5_A | 107 | Nmr Structure Of The Third Immunoglobulin Domain Fr | 1e-06 | ||
| 2eo9_A | 118 | Solution Structure Of The Fifth Ig-Like Domain From | 3e-06 | ||
| 2eo9_A | 118 | Solution Structure Of The Fifth Ig-Like Domain From | 4e-05 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 4e-06 | ||
| 2edx_A | 134 | Solution Structures Of The Fn3 Domain Of Human Rece | 5e-06 | ||
| 1epf_A | 191 | Crystal Structure Of The Two N-Terminal Immunoglobu | 1e-05 | ||
| 1epf_A | 191 | Crystal Structure Of The Two N-Terminal Immunoglobu | 2e-04 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 2e-05 | ||
| 2ed9_A | 124 | Solution Structure Of The Third Fibronectin Type Ii | 6e-05 | ||
| 3puc_A | 99 | Atomic Resolution Structure Of Titin Domain M7 Leng | 6e-05 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 8e-05 | ||
| 2dl9_A | 103 | Solution Structure Of The Ig-Like Domain Of Human L | 1e-04 | ||
| 2dl9_A | 103 | Solution Structure Of The Ig-Like Domain Of Human L | 2e-04 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 2e-04 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 4e-04 | ||
| 2yr3_A | 99 | Solution Structure Of The Fourth Ig-Like Domain Fro | 2e-04 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 2e-04 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 3e-04 | ||
| 2c5d_C | 195 | Structure Of A Minimal Gas6-Axl Complex Length = 19 | 2e-04 | ||
| 2xy2_A | 189 | Crystal Structure Of Ncam2 Ig1-2 Length = 189 | 2e-04 | ||
| 2kkq_A | 116 | Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom | 3e-04 | ||
| 3zyo_A | 411 | Crystal Structure Of The N-Terminal Leucine Rich Re | 3e-04 | ||
| 3ncm_A | 92 | Neural Cell Adhesion Molecule, Module 2, Nmr, 20 St | 3e-04 | ||
| 1tnm_A | 100 | Tertiary Structure Of An Immunoglobulin-Like Domain | 4e-04 | ||
| 1nct_A | 106 | Titin Module M5, N-Terminally Extended, Nmr Length | 4e-04 | ||
| 3zyi_A | 452 | Netring2 In Complex With Ngl2 Length = 452 | 4e-04 | ||
| 3zyi_A | 452 | Netring2 In Complex With Ngl2 Length = 452 | 6e-04 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 5e-04 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 5e-04 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 5e-04 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 7e-04 |
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226 | Back alignment and structure |
|
| >pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226 | Back alignment and structure |
|
| >pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225 | Back alignment and structure |
|
| >pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225 | Back alignment and structure |
|
| >pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225 | Back alignment and structure |
|
| >pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225 | Back alignment and structure |
|
| >pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394 | Back alignment and structure |
|
| >pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231 | Back alignment and structure |
|
| >pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201 | Back alignment and structure |
|
| >pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220 | Back alignment and structure |
|
| >pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231 | Back alignment and structure |
|
| >pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220 | Back alignment and structure |
|
| >pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219 | Back alignment and structure |
|
| >pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334 | Back alignment and structure |
|
| >pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334 | Back alignment and structure |
|
| >pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391 | Back alignment and structure |
|
| >pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100 | Back alignment and structure |
|
| >pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa1568 Protein Length = 117 | Back alignment and structure |
|
| >pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241 | Back alignment and structure |
|
| >pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Neogenin Length = 132 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1 Protein Length = 122 | Back alignment and structure |
|
| >pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107 | Back alignment and structure |
|
| >pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118 | Back alignment and structure |
|
| >pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134 | Back alignment and structure |
|
| >pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191 | Back alignment and structure |
|
| >pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin Domains Of The Neural Cell Adhesion Molecule (Ncam) Length = 191 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii Domain Of Human Netrin Receptor Dcc Length = 124 | Back alignment and structure |
|
| >pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103 | Back alignment and structure |
|
| >pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine- Rich Repeat-Containing Protein 4 Length = 103 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex Length = 195 | Back alignment and structure |
|
| >pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189 | Back alignment and structure |
|
| >pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116 | Back alignment and structure |
|
| >pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411 | Back alignment and structure |
|
| >pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20 Structures Length = 92 | Back alignment and structure |
|
| >pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100 | Back alignment and structure |
|
| >pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106 | Back alignment and structure |
|
| >pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452 | Back alignment and structure |
|
| >pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = 6e-97
Identities = 99/438 (22%), Positives = 168/438 (38%), Gaps = 35/438 (7%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
L F + K G EC G + W K+G + + + + +
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHNV 156
Query: 62 -NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSII 117
L I + ++ G+Y C N GT S+ A L + V P+ P ++
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSS-AKLTLSEHEVPPFFDLKPVSVDLALGESG 215
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAENA 173
F+C V G A + + W + + + + +L + V DAG+Y C A N
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 174 VGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232
GK S SA L VQ P ++ R+ + + C I GSP W + I
Sbjct: 276 AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE--IQ 333
Query: 233 PGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPN 291
+ + + +L++ N+S + C NAAGS + SL V
Sbjct: 334 ESSKFRMSF----VESVAVLEMYNLSVEDSG--DYTCEAHNAAGSASSSTSLKV-----K 382
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SL 346
PPV P ++ L C+++G V W + +RE+ SG + + + S+
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP-STYPGPPTKPT 405
+ +V D GEY C + GS + S+ ++P F + ST G +
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR----FVKKLSDISTVVGEEVQLQ 498
Query: 406 LVNQTANGLTLAWSRNNQ 423
+ A +++AW ++
Sbjct: 499 ATIEGAEPISVAWFKDKG 516
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 4e-84
Identities = 91/384 (23%), Positives = 162/384 (42%), Gaps = 30/384 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAI 65
F ++P S +A G++ +C G + W K+ I + ++ LV + L +
Sbjct: 199 FFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVG 124
K D G+Y C NVAG + A L V P I+ + + V +EC +G
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 125 GDAVLTVHWKRLGSAMPED----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G + V W + + + E V L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L V+ P+ R++P + G D C ++G+PP W + + G +
Sbjct: 377 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR--ELRSGKKY--- 431
Query: 241 QAEITSDGMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+I S+ + I NV C N GSD S+T+ PP +
Sbjct: 432 --KIMSENFLTSIHILNVDSADIG--EYQCKASNDVGSDTCVGSITL-----KAPPRFVK 482
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGD---GSLVLTDVT 352
++ + + E +L+ + G V W++ V + ++ +L +
Sbjct: 483 KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE 542
Query: 353 KEDSGEYTCVVKSPHGSASWSASL 376
++G+YTC +K+ G+ A+L
Sbjct: 543 PANAGKYTCQIKNEAGTQECFATL 566
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 1e-75
Identities = 104/452 (23%), Positives = 170/452 (37%), Gaps = 62/452 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 66
F + A G+ L+C G PE + W K + + +++ + +L I
Sbjct: 8 FIEPLEHVEAAIGEPITLQC-KVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFECSV 123
+D G Y C +N G S+ AVL + + P R KD + + FEC +
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 124 GGDAVLTVHWKRLGSAMPED---RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
G L V W + G + +D + S + +LQ+ G+Y C A N +G S+
Sbjct: 126 NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS 185
Query: 180 SATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
SA LT+ + P +P + L +G F C + G+ P W + I PG
Sbjct: 186 SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE--IRPGGN 243
Query: 237 VDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ L + V++ T C N AG D A L V P
Sbjct: 244 YKMTL----VENTATLTVLKVTKGDAGQYT-------CYASNVAGKDSCSAQLGVQEP-- 290
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT---GDGS 345
P I ++ + R C++ G V W++ E E+ + ++
Sbjct: 291 --PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L + +++ EDSG+YTC + GSAS S SL+ + P P P T
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP------------PVFRKKPHPVET 396
Query: 406 LVNQTAN---------GLTLAWSRNNQIGSSS 428
L + ++W ++ + S
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSG 428
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 6e-57
Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 14/285 (4%)
Query: 7 EFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LA 64
F + + S+ V + EC G PE ++W K+ I + R+ V+ L
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
+ + D G Y C N AG+ S+ L+V P + P + + EC +
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 125 GDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G V W + + + ++ S+ + +V D GEY C+A N VG +
Sbjct: 410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV 469
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
++T++ P ++ SD+ VG + IEG+ P S W + ++ D +
Sbjct: 470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGE-IVRESDNI--- 525
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
S+ + L+ A C N AG+ A+L+V
Sbjct: 526 -WISYSENIATLQFSRAEPANAGKYT-CQIKNEAGTQECFATLSV 568
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 3e-56
Identities = 89/405 (21%), Positives = 148/405 (36%), Gaps = 54/405 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP-SRSLQL 155
PY I + + I +C V G + + W + + + +M SL +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGI 212
+ V D GEY C+AEN+VG +++SA L ++ + P + D+ +G F C I
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
GS P W +G L+ + + L+I ++ C N
Sbjct: 126 NGSEPLQVSWYKDGE--LLKDDANLQTSF----IHNVATLQILQTDQSHVGQYN-CSASN 178
Query: 273 AAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGER 330
G+ + A LT+S PP P + L L +C V G + W + R
Sbjct: 179 PLGTASSSAKLTLSE--HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236
Query: 331 EVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
E+ G +T +L + VTK D+G+YTC + G S SA L + P P
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--PR-- 292
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444
F + + T G + + W ++ + S
Sbjct: 293 -FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET----------------EIQES 335
Query: 445 SPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
S R++ +L + NL+V + + A N+ G
Sbjct: 336 SK---------FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 371
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-42
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
FR +P G LEC +G P + W K+ + K + + + I
Sbjct: 387 FRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKRELR-SGKKYKIMSENFLTSIHI 444
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
+ D G YQC N G+ + + P ++ D + + + ++ G
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 126 DAVLTVHWKRLGSAMPED--RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
++V W + + + + + S +LQ S +AG+Y C+ +N G
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 181 ATLTVQ 186
ATL+V
Sbjct: 564 ATLSVL 569
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 50/320 (15%), Positives = 93/320 (29%), Gaps = 65/320 (20%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P E + +G C ++G+P W E + + +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTK--LRSAPAYK----MQFKN 58
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
+ L I V + C N+ G+ + A L + PP +
Sbjct: 59 NVASLVINKVDHSDVG--EYTCKAENSVGAVASSAVLVIKERK--LPPSFARKLKDVHET 114
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTC 361
L C++ G V W++ + + + +L + + G+Y C
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 362 VVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANG-- 413
+P G+AS SA L P P P + + ++ G
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVP---------PFFDLKPVSVDLALGESGTFKCHVTGTA 225
Query: 414 -LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
+ + W+++N+ + ++ + LTV +
Sbjct: 226 PIKITWAKDNR----------------EIRPGGN---------YKMTLVENTATLTVLKV 260
Query: 473 TV---GLTYTFLVRALNSHG 489
T G YT A N G
Sbjct: 261 TKGDAG-QYT--CYASNVAG 277
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 9e-89
Identities = 99/394 (25%), Positives = 153/394 (38%), Gaps = 33/394 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F +P G LL C P + WKK+G + R + + +L IQ
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 67 D-----SRKTDDGRYQCVVK-NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+ K D+G YQC +G+ S A + V + + T ++ +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 121 CSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG- 175
C V GD + T+HW++ L + R+ VLPS +LQ+S ++ D+G Y C A N
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 176 KISASATLTVQ------MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
+ A + + +RPS++ G+DAV C + G PPPS W+
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE-EV 261
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ + + L I NV+ + C+ + A A LTV
Sbjct: 262 IQLRSKKY-----SLLGGSN--LLISNVTDDDSGTYT-CVVTYKNENISASAELTV---- 309
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLV 347
PP L P+N + C V G +V W + V + G +L
Sbjct: 310 -LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR 368
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ V K D G Y CV ++ G+A SA L P
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 3e-72
Identities = 84/293 (28%), Positives = 124/293 (42%), Gaps = 22/293 (7%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-FENSKRLRLVDGTNLA 64
F Q +S GDT LL+C G P PT+ W+KN ++ R+ ++ L
Sbjct: 122 LRFLSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIV 118
I + D G Y+C +N A TR +A +R+L P Y ++ P + V
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 119 FECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
EC V G + W R + + S+L +L +S+V +D+G Y C
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN 300
Query: 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
ISASA LTV + P PS+L D F C + G P P+ WM G+ + P D
Sbjct: 301 ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV--VIPSDY 358
Query: 237 VDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+I L+I V ++ C+ N AG+ + A L V P
Sbjct: 359 F-----QIVGGSN--LRILGVVKSDEG--FYQCVAENEAGNAQSSAQLIVPKP 402
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 6e-55
Identities = 73/318 (22%), Positives = 119/318 (37%), Gaps = 26/318 (8%)
Query: 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAM 140
+ + + + P D ++ CS D V + WK+ G +
Sbjct: 5 SELESSHHH-HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL 63
Query: 141 P---EDRMSVLPSRSLQLSDV-----RLEDAGEYVCEAENAVG--KISASATLTVQMAPI 190
+DR LP+ SL + ++ D G Y CEA IS +A + V
Sbjct: 64 ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLR 123
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
+ + +G + C + G P P+ W PGD + + G
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS----RVVVLPSGA- 178
Query: 251 LLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTV-SGPDPNPPPVILFGPANQTLPL 307
L+I + + + C N A + A + + S P + L P+N
Sbjct: 179 -LQISRLQPGDSG--VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Query: 308 RSEARLRCQVRGE--GSVQWWRGEREV-GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
+A L C V G S W RGE + + ++ G +L++++VT +DSG YTCVV
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 365 SPHGSASWSASLRFESPT 382
+ + S SA L P
Sbjct: 296 YKNENISASAELTVLVPP 313
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 53/281 (18%), Positives = 99/281 (35%), Gaps = 28/281 (9%)
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNR 228
+ + + + PSD G + + C E P W +G
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII----LCLG-VNAAGSDLAR-AS 282
+ DR + +G L IQN+ + C + +GS ++R A
Sbjct: 63 LALGMDDRK-----QQLPNGS--LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP---R 337
+ V+G P L + T + L+C+V G ++ W + ++++ P R
Sbjct: 116 VMVAG-----PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS-ASWSASLRFESPTNPNIGFFRAPEPST 396
V V G+L ++ + DSG Y C ++P + A +R S + + PS
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 397 YPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSSLLGYQV 434
K ++ +G + W R ++ Y +
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 298 bits (764), Expect = 8e-88
Identities = 102/455 (22%), Positives = 161/455 (35%), Gaps = 61/455 (13%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPR--GHPEPTLVWKKNGHPIDF---ENSKRLRLV 58
+ + + + V G++A+++C P + W + F E + ++
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 59 DGTNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGPK-------- 107
L I++ D YQC K+ TR S V+ +P PK
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLE 161
T S SS + C G V W + + VL R +L + D +E
Sbjct: 257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
D+G+Y+C N+VG S LTV + P ++ GR AVF C G+P +
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
WM +G I + V L+I++V + + C N S A A
Sbjct: 377 WMKDGKA--IGHSESV--------------LRIESVKKEDKGMYQ-CFVRNDRESAEASA 419
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRV- 338
L + PPVI +T+ L+C G + W +++ + R
Sbjct: 420 ELKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQ 477
Query: 339 -------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391
N L +T V D G Y C+ KS G A SA L + R
Sbjct: 478 VGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-----YIRQ 532
Query: 392 PEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ 423
E + +V G ++ W R+N+
Sbjct: 533 MEKKAI--VAGETLIVTCPVAGYPIDSIVWERDNR 565
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 6e-77
Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 39/392 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----- 61
R + + + G + L+C G+P P + W+ +G I N+ R ++
Sbjct: 431 VIRQAFQEETMEPGPSVFLKC-VAGGNPTPEISWELDGKKI--ANNDRYQVGQYVTVNGD 487
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV 118
L I D G Y+C+ K+ G E + A L V PYI R + + A ++
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLPYI-RQMEKKAIVAGETLI 545
Query: 119 FECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVGK 176
C V G + ++ W+R A+P + + V P+ +L + +V R D Y C A+N G
Sbjct: 546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 177 -ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYP 233
S + V + P I+ + +VG+ C + G P W L+G I
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDG--QAISE 663
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + ++L I+ V + A C N AG L V P
Sbjct: 664 DLGITTSR---VGRRGSVLTIEAVEASHAGNFT-CHARNLAGHQQFTTPLNV-----YVP 714
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG-------EREVGSGPRVNVTGDG 344
P + P ++ S+A++ C+ G + V W + +++ + V +G
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE-EG 773
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L + ++ K + G Y C + GS + +
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 256 bits (654), Expect = 1e-72
Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 45/396 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
++ P +Q V G A+ C G+P T+ W K+G I S L I+
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSES---------VLRIE 394
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSV 123
+K D G YQC V+N + E++ A L++ P I + ++ T+ + +C
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEAS-AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Query: 124 GGDAVLTVHWKRLGSAMPED---------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
GG+ + W+ G + + ++ L ++ V D G Y C A++ V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
G SA L V P +R + + G + C + G P S W + +
Sbjct: 514 GVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR--ALPIN 570
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPP 293
+ ++ +G L I+NV R + C+ N G + V P
Sbjct: 571 RKQ-----KVFPNGT--LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL----P 619
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVT----GDGSL 346
+I F + L C V G ++ W + + + + L
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVL 679
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ V +G +TC ++ G ++ L P
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 228 bits (582), Expect = 6e-63
Identities = 90/435 (20%), Positives = 145/435 (33%), Gaps = 59/435 (13%)
Query: 8 FRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGT---- 61
F +P + + A +EC G+P P ++W + +G + R DG
Sbjct: 41 FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 99
Query: 62 NLAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+D R+ Y C+ +N G+ S D +R +V Y V + V +
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 159
Query: 121 CSV---GGDAVLTVHWKR------LGSAMPEDRMSVLPSRSLQLSDVRLEDA-GEYVCEA 170
C + D V V W A + + VLPS L + +V ED Y C
Sbjct: 160 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 171 ENAVG---KISASATLTVQMAPIVRERPSDLRLE--------VGRDAVFLCGIEGSPPPS 219
++ + ++SA+ V PI P + L LC +G P P
Sbjct: 220 KHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV 279
Query: 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278
W + + + + L I++ + LC+ N+ G +
Sbjct: 280 FRWYKFIEGT---TRKQAVVLNDRVKQVS-GTLIIKDAVVEDSG--KYLCVVNNSVGGES 333
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP 336
LTV P P QT+ A CQ G +V W + + +
Sbjct: 334 VETVLTV-----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---- 384
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+ L + V KED G Y C V++ SA SA L+ +P P
Sbjct: 385 ---GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP---------PVI 432
Query: 397 YPGPPTKPTLVNQTA 411
+ +
Sbjct: 433 RQAFQEETMEPGPSV 447
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-51
Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 16/290 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ Q + + + AG+T ++ C P G+P ++VW+++ + +++ ++ L I++
Sbjct: 529 YIRQMEKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPI--NRKQKVFPNGTLIIEN 585
Query: 68 -SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSV-G 124
R +D Y CV KN G ++V+V P II ++ + CSV G
Sbjct: 586 VERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPG 645
Query: 125 GDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
GD L + W G A+ ED L + V AG + C A N G
Sbjct: 646 GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+ L V + P P+D G DA C +G P P W + PG+ D
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT---PGEYKDL 762
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS-LTVSGP 288
+++ L + N+ +T LC +N GS L+ ++V
Sbjct: 763 KKSDNIRVEEGTLHVDNIQKTNEG-YYLCEAINGIGSGLSAVIMISVQAH 811
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 2e-48
Identities = 65/347 (18%), Positives = 104/347 (29%), Gaps = 32/347 (9%)
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTREST-DAVLRVLVKPYIIRGPKDT-TVSASSIIVFE 120
+ + + R + V G++ + P ++ P + S S+ E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLED------AGEYVCEAE 171
C G+ + + W R D + L R ED A Y C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 172 NAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE---GSPPPSTFWMLEGN 227
N G I S + +A + + G AV C I W +
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 228 RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD------LARA 281
Y + + + G L I+ V C + + R
Sbjct: 181 E--NYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN 339
+T P V L +T S L C +G +W++ V
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296
Query: 340 VTG-----DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ G+L++ D EDSG+Y CVV + G S L +P
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 343
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-28
Identities = 60/357 (16%), Positives = 103/357 (28%), Gaps = 52/357 (14%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFL 209
+ + + RL+ + A A G ++A+ Q P ++E + + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 210 CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL-- 267
C G+P P W+ G V ++ L +
Sbjct: 61 CKASGNPMPEIIWIRSD-------GTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 268 ---CLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---- 319
CL N GS ++R + + + + A ++C +
Sbjct: 114 VYACLARNQFGSIISRDVHVRAV-----VAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 168
Query: 320 -EGSVQWWRGEREVG-----SGPRVNVTGDGSLVLTDVTKEDS-GEYTCVVKSPHGSAS- 371
V W E E + V G L + +V ED Y C K +
Sbjct: 169 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 228
Query: 372 WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANGL---TLAWSRNN 422
SA+ T P P+ + K + T A G W +
Sbjct: 229 LSATKGRLVITEPISS--AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 423 ---QIGSSSLLGYQVEMYSRPL--PSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
+ +L +V+ S L + D + ++ V N T LTV
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVE-D--SGKYLCVVNNSVGGESVETVLTV 340
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 2e-16
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-----DFENSKRLRLVDGT 61
+ ++P + A G A +EC G P+P + WKK D + S +R+ +GT
Sbjct: 716 RWILEPTDKAFAQGSDAKVEC-KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L + + +KT++G Y C N G+ S ++ V +
Sbjct: 775 -LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 251 bits (642), Expect = 3e-75
Identities = 85/390 (21%), Positives = 143/390 (36%), Gaps = 37/390 (9%)
Query: 8 FRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F +P + L C +G+P+P + WK NG +D R +VDG+ L
Sbjct: 8 FVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 66
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSV 123
++ D G YQC+ N GT S +A L+ + R +V +V C
Sbjct: 67 NNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP 126
Query: 124 -GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG---KI 177
L+ W +D R + +L ++ V D G Y C N V +
Sbjct: 127 PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186
Query: 178 SASATLTVQMAPIVRER--------PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
L ++ ++ E P + E G C G+P P+ W +
Sbjct: 187 GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK- 245
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
I R +L+I N + A C+ N+ G ++A+ LT
Sbjct: 246 PIARKARRHK--------SNGILEIPNFQQEDAG-SYECVAENSRGKNVAKGQLTFYA-- 294
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLV 347
P + + + + C+ G + + +W + + + R+ + G+L
Sbjct: 295 ---QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-QGTLN 350
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+T V D+G Y CV ++ HG SA L
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 7e-67
Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 26/293 (8%)
Query: 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E F+ + +S V G +L CGPP E + W N +P +++++R + NL
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS-YQDNRRFVSQETGNLY 160
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----------PYIIRGPKDTTVSAS 114
I K+D G Y CVV N + ++++ ++ P+
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 115 SIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
+ + EC G+ V T+ W+R G + + L++ + + EDAG Y C AEN+
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 280
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
GK A LT P + +D+ + + + C G P P+ W+ G+ +
Sbjct: 281 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP--LLT 338
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
DR+ +I L I V+ + A + C+ N G + A L+V
Sbjct: 339 RDRI-----QIEQ---GTLNITIVNLSDAG--MYQCVAENKHGVIFSSAELSV 381
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 3e-43
Identities = 61/316 (19%), Positives = 102/316 (32%), Gaps = 30/316 (9%)
Query: 100 PYIIRGPKDTTVSASSI---IVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154
P ++ P S + C V G+ + WK G+ + D + SL
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 155 LSDV-RLEDAGEYVCEAENAVGKI-SASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCG 211
+++ + +DAG Y C A N+ G I S A L S + + G+ V LCG
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125
Query: 212 I-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
S S W+ R G L I V ++ C+
Sbjct: 126 PPPHSGELSYAWIFNE-YPSYQDNRRF-----VSQETGN--LYIAKVEKSDVGNYT-CVV 176
Query: 271 VNAAGSDLARASLTV------SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGS 322
N + T P + + P + +L C G +
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT 236
Query: 323 VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ W R + + + +G L + + +ED+G Y CV ++ G L F +
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ- 295
Query: 383 NPNIGFFRAPEPSTYP 398
PN + +
Sbjct: 296 -PN--WVQIINDIHVA 308
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 2e-41
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRK 70
P++ G T LEC G+P PT++W++ +G PI R +G L I + ++
Sbjct: 212 PETVPAEKGTTVKLEC-FALGNPVPTILWRRADGKPIA--RKARRHKSNGI-LEIPNFQQ 267
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT 130
D G Y+CV +N G + L +P ++ D V+ + +EC G T
Sbjct: 268 EDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W + G + + +L ++ V L DAG Y C AEN G I +SA L+V
Sbjct: 327 YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 8e-74
Identities = 91/399 (22%), Positives = 137/399 (34%), Gaps = 55/399 (13%)
Query: 8 FRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F QP +A + L C R +P T WK NG + R RLV G +
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSV 123
+ D G YQCV N GT S +A LR +D ++ ++F CS
Sbjct: 66 SNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP 125
Query: 124 -GGDAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
L+ W R + +L ++ D G Y C A + + I+
Sbjct: 126 PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185
Query: 179 ASATLTV------------QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
S I + P+D G+ C G+P P W
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD 245
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLAR 280
++S+ + L IQNV C N G D +
Sbjct: 246 GSQTSK----------WLSSEPL--LHIQNVDFEDEGTYE-------CEAENIKGRDTYQ 286
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRV 338
+ + P L + + S+ R C G+ +V+W R + + S R+
Sbjct: 287 GRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI 341
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
V+ G L + + EDSG Y CV ++ HG+ SA L
Sbjct: 342 EVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-65
Identities = 63/300 (21%), Positives = 111/300 (37%), Gaps = 27/300 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVD 59
L+E + ++ G + C PP +P + W N P + +R
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
Query: 60 GTNLAIQDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVLVK-------PYIIRGPKD 108
NL I + +D G Y C + + S + L + + + P D
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD 216
Query: 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
T ++ EC G+ V + W++L + + L + +V ED G Y C
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW--LSSEPLLHIQNVDFEDEGTYEC 274
Query: 169 EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228
EAEN G+ + + + P + +D ++G D + C G P P+ W+ +G
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP 334
Query: 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ +R+ S G L+ + + + C+ N G+ A A LTV
Sbjct: 335 --LASQNRI------EVSGGE--LRFSKLVLEDSG--MYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 5e-46
Identities = 61/323 (18%), Positives = 102/323 (31%), Gaps = 44/323 (13%)
Query: 100 PYIIRGPKDTTV---SASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154
P P T SA + C + T WK G+ + D L + L
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 155 -LSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCG 211
+ V+ +DAG Y C A NA G + S A+L + E +++ G +F C
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 212 I-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
P S W+L + I R S L I +
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRR------FVSQTTGNLYIAKTEASDLGNYS---- 174
Query: 265 IILCLGVNAAG-------SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV 317
C + S ++ SL P + PA+ L C
Sbjct: 175 ---CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA 231
Query: 318 RGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
G ++W + + GS ++ + L + +V ED G Y C ++ G ++
Sbjct: 232 FGNPVPQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 376 LRFESPTNPNIGFFRAPEPSTYP 398
+ + P+ + +
Sbjct: 289 IIIHAQ--PD--WLDVITDTEAD 307
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-18
Identities = 44/255 (17%), Positives = 69/255 (27%), Gaps = 31/255 (12%)
Query: 187 MAPIVRERPSDLRLEVG---RDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
P+ E+P+ G C +PP + W + G + P R
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY------ 56
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
G +L+ V A C+ NA G+ ++R ASL
Sbjct: 57 RLVAG-DLVISNPVKAKDAGSYQ-CVATNARGTVVSREASLRFGFL----QEFSAEERDP 110
Query: 303 QTLPLRSEARLRCQV---RGEGSVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDS 356
+ C S +W E G R G+L + D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ 410
G Y+C S + S +F + + P L Q
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 411 ANGL---TLAWSRNN 422
A G + W + +
Sbjct: 231 AFGNPVPQIKWRKLD 245
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-71
Identities = 79/404 (19%), Positives = 130/404 (32%), Gaps = 53/404 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ QP + +LEC G+ + WKK+G +++ D +L
Sbjct: 9 LKDQPAEVLFRENNPTVLEC-IIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GG 125
+ +D+G YQC + AG S R + T +C +
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 126 DAVLTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDA---GEYVCEAENAV 174
+ WK+ S + R++ P +L + V ED +YVC A+NA
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA 187
Query: 175 G-KISASATLTVQM----------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
+ ++ P+ + D+ + G + C +P +
Sbjct: 188 VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
G P DR+ + TS L + T C N G
Sbjct: 248 KNGKDVNGNPEDRI--TRHNRTSGKR--LLFKTTLPEDEGVYT-------CEVDNGVGKP 296
Query: 278 LAR-ASLTVSGPDPNPPPVILFGPANQ-TLPLRSEARLRCQVRGE--GSVQWWRGEREVG 333
LTV P P + + + C+V G +V W + +
Sbjct: 297 QKHSLKLTVVS-----APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL- 350
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
SG R VT D LV+ V D G Y C + HG + ++
Sbjct: 351 SGGRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 2e-62
Identities = 65/308 (21%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDG 60
+ + G L+C P +P+P + WKK D + +R+
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 61 TNLAIQDSRKTD---DGRYQCVVKNVAGTRESTDAVLRVLV----------KPYIIRGPK 107
NL K D +Y C KN A E + +P K
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLE 161
D A + + C G + + ++ + G + + R + + L E
Sbjct: 221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280
Query: 162 DAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPS 219
D G Y CE +N VGK S LTV AP ++P + ++ G+D C + G P P+
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278
W G R +T G L I+ V C N G
Sbjct: 341 VVWSHNAKPL---SGGRA-----TVTDSG---LVIKGVKNGDKG--YYGCRATNEHGDKY 387
Query: 279 ARASLTVS 286
+ V+
Sbjct: 388 FETLVQVN 395
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-47
Identities = 60/310 (19%), Positives = 91/310 (29%), Gaps = 24/310 (7%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPED---RMSVLP 149
L V P + P + ++ V EC + G+ + WK+ G +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 150 SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVF 208
SL + D G Y C AE G S + + + GR
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 209 LCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
C + P P W + P V + IT+ L V++ I
Sbjct: 121 DCVLPNAYPKPLITWKKRLSG--ADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 268 --CLGVNAAGSDLARAS------LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
C NAA + +T PV + + + C
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238
Query: 320 --EGSVQWWRGEREVGSGP-----RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-S 371
G +++ ++V P R N T L+ ED G YTC V + G
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 372 WSASLRFESP 381
S L S
Sbjct: 299 HSLKLTVVSA 308
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 2e-21
Identities = 42/272 (15%), Positives = 73/272 (26%), Gaps = 52/272 (19%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQ 241
L V P+++++P+++ V C IEG+ + W +G + ++
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-----SYNWQEHNA 55
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
A +G L C AG +R S +
Sbjct: 56 ALRKDEGS--LVFLRPQASDEGHYQ-------CFAETPAGVASSRVISFRKTY-----LI 101
Query: 295 VILFGPANQTLPLRSEARLRCQV-RGEG--SVQWWRGEREV-------GSGPRVNVTGDG 344
+T +L C + + W + R+ DG
Sbjct: 102 ASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 161
Query: 345 SLVLTDVTKEDS---GEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPSTYPGP 400
+L T VTKED +Y C K+ + T N G+ P P
Sbjct: 162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ--YVS 219
Query: 401 PTKPTLVNQT------ANGL---TLAWSRNNQ 423
+ +N +
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGK 251
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 231 bits (591), Expect = 3e-69
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 19/289 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAI 65
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 7 FFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVG 124
K D G+Y C NVAG ++S A L V P I+ + + V +EC +G
Sbjct: 66 LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 125 GDAVLTVHWKRLGSAMPED---RMSVLPSR-SLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G + V W + + + E RMS + S L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L V+ P+ R++P + G D C ++G+PP W + + G +
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE--LRSGKKY--- 239
Query: 241 QAEITSDGMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+I S+ + I NV C N GS S+T+
Sbjct: 240 --KIMSENFLTSIHILNVDSADIG--EYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 5e-65
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 24/295 (8%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSRS 152
+ P+ P ++ F+C V G A + + W + + V + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCG 211
L + V DAG+Y C A N GK S SA L VQ P ++ R+ + + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG 270
I GSP W + I + + + +L++ N+S + C
Sbjct: 123 IGGSPEIKVLWYKDET--EIQESSKFRMSF----VESVAVLEMYNLSVEDSG--DYTCEA 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRG 328
NAAGS + SL V PPV P ++ L C+++G V W +
Sbjct: 175 HNAAGSASSSTSLKV-----KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 329 EREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+RE+ SG + + + S+ + +V D GEY C + GS + S+ ++
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 24/216 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P +P + L +G F C + G+ P W + I PG +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR--EIRPGGNYKMTL----VE 58
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTL 305
L + V++ A C N AG D A L V PP + ++ +
Sbjct: 59 NTATLTVLKVTKGDAG--QYTCYASNVAGKDSCSAQLGV-----QEPPRFIKKLEPSRIV 111
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYT 360
R C++ G E V W++ E E+ + ++ L + +++ EDSG+YT
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171
Query: 361 CVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C + GSAS S SL+ + P F + P P
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPV----FRKKPHPVE 203
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 2e-67
Identities = 89/404 (22%), Positives = 131/404 (32%), Gaps = 56/404 (13%)
Query: 8 FRVQP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGT--- 61
Q K V D L+EC +G+P P+ W +N + R+ + GT
Sbjct: 19 ITKQSAKDHIVDPRDNILIEC-EAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVI 77
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFE 120
+ + +G YQC +N GT S L+V P V + + +
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDA-GEYVCEAENAVG- 175
C+ G + W R+S + L S+V L+D +Y C A
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197
Query: 176 --KISASATLTVQMAPIVRER----------PSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
+ TL V V ER S + G D + C G P P W
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+G L + +N + L+I NVS CL N GS
Sbjct: 258 KKG-GDLPSDKAKFEN------FNKA--LRITNVSEEDSGEYF-------CLASNKMGSI 301
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSG 335
S+ V P L P N L + RL C+ G +VQW + S
Sbjct: 302 RHTISVRV-----KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Query: 336 P--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
P +++ D Y C + HG +A +
Sbjct: 357 PPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 6e-65
Identities = 65/300 (21%), Positives = 111/300 (37%), Gaps = 25/300 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+S + V G L+C PP G P P + W + KR+
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHN 170
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLV-------KPYIIR---GPK 107
+L + D Y C + ++ L+VL P +
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVRLEDAGEY 166
V ++ EC G + W + G +P D+ ++L++++V ED+GEY
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
C A N +G I + ++ V+ AP + P +L L G D +C G+P P+ WM+ G
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
P + + + ++ + A + C N G LA A ++V
Sbjct: 351 EPLQSAPPNPN-----REVAGDT--IIFRDTQISSRA--VYQCNTSNEHGYLLANAFVSV 401
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 5e-45
Identities = 68/329 (20%), Positives = 111/329 (33%), Gaps = 34/329 (10%)
Query: 92 AVLRVLVKPYIIRGP-KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSV 147
+ P I + KD V I+ EC G+ + HW R + R+S+
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSM 68
Query: 148 LPSR-----SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAP-IVRERPSDLRL 200
+ E GEY C A N G S L V +P +E + +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Query: 201 EVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
+ G C G P P FWM I RV +G L NV
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSME-PITQDKRV-----SQGHNGD--LYFSNVML 180
Query: 260 TAAPLIILCLGVNAAGSDL---ARASLTV--SGPDPNPPPVILF---GPANQTLPLRSEA 311
C + +L V + P ++ ++Q + +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
L C G + W++ ++ S + +L +T+V++EDSGEY C+ + GS
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 370 ASWSASLRFESPTNPNIGFFRAPEPSTYP 398
+ S+R ++ P + P+
Sbjct: 301 IRHTISVRVKAA--PY--WLDEPKNLILA 325
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 8e-41
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 7/178 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
SQ V G LLEC G P P + W K G + + K L I + +
Sbjct: 229 ASSQMVLRGMDLLLEC-IASGVPTPDIAWYKKGGDL--PSDKAKFENFNKALRITNVSEE 285
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
D G Y C+ N G+ T +RV PY + PK+ ++ C G+ TV
Sbjct: 286 DSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV 344
Query: 132 HWKRLG---SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G + P + + ++ D ++ Y C N G + A+A ++V
Sbjct: 345 QWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 8e-24
Identities = 43/267 (16%), Positives = 78/267 (29%), Gaps = 30/267 (11%)
Query: 177 ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235
+ S + P I ++ D ++ + + C +G+P PS W I
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLII---LCLGVNAAGSDLAR-ASLTVSGPDPN 291
RV + G L I S C N G+ L+ L VS
Sbjct: 65 RV----SMRRRSG--TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS--- 115
Query: 292 PPPVILFGPANQTLPLRSEARLRCQV-RGEG--SVQWWR-GEREVGSGPRVNVTGDGSLV 347
P + + L+C G + W + RV+ +G L
Sbjct: 116 -PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 348 LTDVTKEDS-GEYTCVVKSPHG-SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
++V +D +Y+C + + + T + ++
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMV 234
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
L A+G+ +AW +
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGG 261
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 3e-67
Identities = 92/399 (23%), Positives = 147/399 (36%), Gaps = 47/399 (11%)
Query: 8 FRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGT---- 61
F +P ++ + A +EC G+P P ++W + +G + R DG
Sbjct: 6 FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64
Query: 62 NLAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+D R+ Y C+ +N G+ S D +R +V Y V + V +
Sbjct: 65 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 124
Query: 121 CSVG---GDAVLTVHWKR------LGSAMPEDRMSVLPSRSLQLSDVRLEDA-GEYVCEA 170
C + D V V W A + + VLPS L + +V ED Y C
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 184
Query: 171 ENAVG---KISASATLTVQMAPIVRERP-------SDLRLEVGRDAVFLCGIEGSPPPST 220
++ + ++SA+ V PI P L L V LC +G P PS
Sbjct: 185 KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF 244
Query: 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280
W + +++ +++ L I++ + LC+ N+ G +
Sbjct: 245 RWYKFIEGTTRKQAVVLNDRVKQVSG----TLIIKDAVVEDSG-KYLCVVNNSVGGESVE 299
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRV 338
LTV P P QT+ A CQ G +V W + + +G
Sbjct: 300 TVLTV-----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---- 350
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ L + V KED G Y C V++ SA SA L+
Sbjct: 351 ---SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-57
Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 40/302 (13%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV--WKKNGHPIDF---ENSKRLRLVDG 60
+ + + V G++A+++C P + V W + F E + ++
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGP-------KDTT 110
L I++ D YQC K+ TR S V+ +P P K
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDAG 164
+ + I C G + W + + VL R +L + D +ED+G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
+Y+C N+VG S LTV + P ++ GR AVF C G+P + WM
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASL 283
+G I + V L+I++V + + C N S A A L
Sbjct: 344 DG--KAIGHSESV--------------LRIESVKKEDKG--MYQCFVRNDRESAEASAEL 385
Query: 284 TV 285
+
Sbjct: 386 KL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 7e-41
Identities = 58/308 (18%), Positives = 90/308 (29%), Gaps = 30/308 (9%)
Query: 100 PYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQL 155
P ++ P + S S+ EC G+ + + W R + L
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 63
Query: 156 SDVRLED------AGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVF 208
R ED A Y C A N G I S + +A + + G AV
Sbjct: 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 123
Query: 209 LCGIE---GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
C I W + + + + + G L I+ V
Sbjct: 124 KCLIPSFVADFVEVVSWHTDEEENYF--PGAEYDGKYLVLPSGE--LHIREVGPEDGYKS 179
Query: 266 ILCLGVNAAGSDL---ARASLTVSGPDPN--PPPVILFGPANQTLPLRSEARLRCQVRG- 319
C + + A V + P L + L C +G
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239
Query: 320 -EGSVQWWRGEREVGSGPRV-----NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
S +W++ V G+L++ D EDSG+Y CVV + G S
Sbjct: 240 PAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299
Query: 374 ASLRFESP 381
L +P
Sbjct: 300 TVLTVTAP 307
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 8e-18
Identities = 47/286 (16%), Positives = 83/286 (29%), Gaps = 44/286 (15%)
Query: 186 QMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
Q P ++E + + A C G+P P W+ ++ +I
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-----QI 55
Query: 245 TSDGMNLLKIQNVSRTAAPLIIL-----CLGVNAAGSDLAR-ASLTVSGPDPNPPPVILF 298
+SDG L + CL N GS ++R +
Sbjct: 56 SSDGK--LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-----QYYEA 108
Query: 299 GPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVG-----SGPRVNVTGDGSLVL 348
+ + + A ++C + V W E E + V G L +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI 168
Query: 349 TDVTKEDS-GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+V ED Y C K + ++ + I P+ P +V
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP--LELMV 226
Query: 408 NQT------ANGL---TLAWSRNNQ---IGSSSLLGYQVEMYSRPL 441
T A G + W + + + +L +V+ S L
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 272
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 3e-67
Identities = 72/438 (16%), Positives = 130/438 (29%), Gaps = 67/438 (15%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
G+ + G+P P + W KNG P++ + G L I
Sbjct: 331 AFGSGMESLVEATVGERVRIPA-KYLGYPPPEIKWYKNGIPLE----SNHTIKAGHVLTI 385
Query: 66 QDSRKTDDGRYQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDT---TVSASSIIVFEC 121
+ + D G Y ++ N ++S L V V P I + + + C
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445
Query: 122 SV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS---------------------------- 152
+V +HW + S S +
Sbjct: 446 TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFA 505
Query: 153 ---------LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVG 203
L + Y CEA N VG+ + V P + +P D++
Sbjct: 506 LIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQ 564
Query: 204 RDAVFLCGIEGSPPPSTFWMLEGNRSL--------------IYPGDRVDNIQAEITSDGM 249
C + S + W G + L + +++ +++ +
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
+++++N S +CL + ++ P I NQT +
Sbjct: 625 LIMELKNASLQDQ-GDYVCLAQDRKTKKRHCVVRQLTVL-ERVAPTITGNLENQTTSIGE 682
Query: 310 EARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTCVVKSP 366
+ C G + W++ + + + G+ +L + V KED G YTC S
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 367 HGSASWSASLRFESPTNP 384
G A A E
Sbjct: 743 LGCAKVEAFFIIEGAQEK 760
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 5e-61
Identities = 74/522 (14%), Positives = 148/522 (28%), Gaps = 44/522 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+SL +Q + A T + C RG + +W N + + + DG
Sbjct: 27 VSLDLPRLSIQKDILTIKANTTLQITC---RGQRDLDWLWPNNQSGSE-QRVEVTECSDG 82
Query: 61 TN---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-----GPKDTTVS 112
L I D G Y+C + ++ P+I G T +
Sbjct: 83 LFCKTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQDYRSPFIASVSDQHGVVYITEN 141
Query: 113 ASSIIVFECSV-GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCE 169
+ +V C + +++ + D R+S + + + AG CE
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE 201
Query: 170 AENAVGKISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
A+ + + V + +V + L VG V C + E
Sbjct: 202 AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNL----LKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
S V+ + M L I V+R+ L C + +
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT-CAASSGLMTKKNST 320
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN 339
+ V + + R+ + G ++W++ + S
Sbjct: 321 FVRVHEKPF--VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES--NHT 376
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPG 399
+ L + +V++ D+G YT ++ +P S + P IG P
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SY 435
Query: 400 PPTKPTLVNQTANG----LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA-- 453
+ T + W + ++ V + + S +
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495
Query: 454 ------TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
+ + T+ ++ + A+N G
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 197 bits (501), Expect = 1e-52
Identities = 72/551 (13%), Positives = 138/551 (25%), Gaps = 95/551 (17%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+ T ++ C + +L + + R+
Sbjct: 128 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFT 186
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFEC 121
I + G C K + +S ++ V+ + ++ +S +V C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR--------------SLQLSDVRLEDAGEYV 167
+ + + + + + ++ +L + V D G Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 168 CEAENAVGKISASATLTVQMAPIVR---ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
C A + + S + V P V S + VG G PPP W
Sbjct: 307 CAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK 366
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASL 283
G +++ T ++L I VS + N + +
Sbjct: 367 NGIP-----------LESNHTIKAGHVLTIMEVSERDTG--NYTVILTNPISKEKQSHVV 413
Query: 284 TVSGPDPNPPPVIL---FGPANQTLPLRSEARLRCQVRGE---GSVQW-WRGEREVGSGP 336
++ PP I + + L C V + W W+ E E + P
Sbjct: 414 SL---VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEP 470
Query: 337 RVNVTGDGS-----------------------------------LVLTDVTKEDSGEYTC 361
V+ L S Y C
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530
Query: 362 VVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL---TLAW 418
+ G S P+ + + TA+ L W
Sbjct: 531 EAVNKVGRGERVISFHVTRGPE----ITLQPDMQPTEQ---ESVSLWCTADRSTFENLTW 583
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ L V P+ + + AT +TN I+ + N ++
Sbjct: 584 YKLG----PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL-IMELKNASLQDQG 638
Query: 479 TFLVRALNSHG 489
++ A +
Sbjct: 639 DYVCLAQDRKT 649
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 6e-50
Identities = 62/457 (13%), Positives = 122/457 (26%), Gaps = 82/457 (17%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK----RLRLVDGTN----- 62
++ G+ +L C R + + ++ K L+ G+
Sbjct: 231 SHGIELSVGEKLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK---DTTVSASSII 117
L I ++D G Y C + T++++ +RV KP++ G + +
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK- 176
G + W + G + + ++ L + +V D G Y N + K
Sbjct: 349 RIPAKYLGYPPPEIKWYKNGIPLESNH-TIKAGHVLTIMEVSERDTGNYTVILTNPISKE 407
Query: 177 -ISASATLTVQMAPIVRERPSD---LRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLI 231
S +L V + P + E+ + G C + PPP W +
Sbjct: 408 KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECA 467
Query: 232 YPGDRV---------------------------DNIQAEITSDGMNLLKIQNVSRTAAPL 264
+ N A I + + + +
Sbjct: 468 NEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVS-A 526
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GS 322
+ C VN G S V P I P + + L C +
Sbjct: 527 LYKCEAVNKVGRGERVISFHV-----TRGPEITLQP-DMQPTEQESVSLWCTADRSTFEN 580
Query: 323 VQWWRGEREVGSGPRVNVT-----------------------GDGSLVLTDVTKEDSGEY 359
+ W++ + + + L + + +D G+Y
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C+ + + E T
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 172 bits (436), Expect = 2e-44
Identities = 54/357 (15%), Positives = 100/357 (28%), Gaps = 42/357 (11%)
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
+Q + CV A + + L P + T+ A++ + C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVS----LDLPRLSIQKDILTIKANTTLQITCR-- 54
Query: 125 GDAVLTVHWKRLGSAMPED-RMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVGKISA 179
G L W S + ++ ++L + V D G Y C
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 180 SATLTVQMAPIV-----RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
+ +P + + + + V C S + + + G
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+R I+ D I + + A ++ C S + + V
Sbjct: 175 NR-------ISWDSKKGFTIPSYMISYAGMVF-CEAKINDESYQSIMYIVVVVG-YRIYD 225
Query: 295 VILFGPANQTLPLRSEARLRCQVRGEGS--VQW-WRGEREVGSGPRVN------------ 339
V+L L + + L C R E + + + W ++
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+L + VT+ D G YTC S + S +R P + F E
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK--PFVAFGSGMESLV 340
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-36
Identities = 56/353 (15%), Positives = 92/353 (26%), Gaps = 76/353 (21%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPID---------------- 48
E + G T L C P P + W
Sbjct: 424 GEKSLISPVDSYQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482
Query: 49 ---------------FENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVAGTREST 90
N + L++G N + Y+C N G E
Sbjct: 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERV 542
Query: 91 DAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP- 149
V P I P D + + C+ + W +LG + LP
Sbjct: 543 -ISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 150 -----------------------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV- 185
++L + L+D G+YVC A++ K +
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
Query: 186 ---QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
++AP + + +G C G+PPP W + + +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET--LVEDSGI----- 713
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
+ DG L I+ V + L C + G A + G +
Sbjct: 714 -VLKDGNRNLTIRRVRKEDEGLYT-CQACSVLGCAKVEAFFIIEGA-QEKTNL 763
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 4e-67
Identities = 61/291 (20%), Positives = 102/291 (35%), Gaps = 18/291 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 62
+ + P ++ G++ C + + W N +R+ +V D +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS 122
L I ++ D G Y+CVV GT+ +++ K P V C
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 123 VGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--I 177
V T+ WK G + + R VL + LQ+ ++ D G Y CE
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
Query: 178 SASATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235
+ V + P R+ + +G+ +C +G P P+ W +G I +
Sbjct: 184 FKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP--IENEE 241
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
D L I+NV + A + C+ N AG A L V
Sbjct: 242 EDDEKHIFSDDSSE--LTIRNVDKNDEAEYV--CIAENKAGEQDASIHLKV 288
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 6e-52
Identities = 61/293 (20%), Positives = 104/293 (35%), Gaps = 25/293 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPED---RMSVL----PSR 151
+ P +S F C V GDA + W R+SV+ S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L + + ++DAG Y C G A+ + + + + P+ + G DAV +C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
+ S PP+ W +G ++ R + S+ L+I+ + +T C G
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRF-----IVLSNNY--LQIRGIKKTDEG-TYRCEG 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG 328
A ++ + V P P N T L L C G E ++ W +
Sbjct: 175 RILARGEINFKDIQVIVNVP-PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 329 EREVGSGP-----RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ + + L + +V K D EY C+ ++ G S L
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-45
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 10/189 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 68 SRKTDDGRYQCVVKNVAGTREST-DAVLRVLVKPYII--RGPKDTTVSASSIIVFECSVG 124
+KTD+G Y+C + +A + D + V V P + + + T + + C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 125 GDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
G T+ W + G + + + S L + +V D EYVC AEN G+
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 179 ASATLTVQM 187
AS L V
Sbjct: 282 ASIHLKVFA 290
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 15/214 (7%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
V PS + VG FLC + G W L R I D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQR---ISVVWNDD 59
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
+ L I N + A I C+ G+ A ++ + + P Q
Sbjct: 60 DSSTLTIYNANIDDAG-IYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFK 113
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
+A + C V ++ W R+V R V + L + + K D G Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 363 VKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+ ++ P + ++ +T
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNAT 207
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 228 bits (581), Expect = 3e-66
Identities = 47/384 (12%), Positives = 102/384 (26%), Gaps = 25/384 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + V + L+ + +W ++ + L+ ++ I
Sbjct: 50 GTVYEAAAVEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+T G Y +++ A + + + C
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYFRKMENQ-DALVCISESV 166
Query: 127 AVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183
V W S + E+ +V+ L ++ + C A N +G+ +
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCCARNELGREC-TRLF 222
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T+ + + L L+VG C + + W LE +
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPAN 302
T + + +V+R C A +T+ I ++
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYT-CSSSKHPSQS---ALVTIVE-----KGFINATNSS 333
Query: 303 QTLPLRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + VR + W + + + S+ K GE
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-LDNGYSISKFCNHKHQPGE 392
Query: 359 YTCVVKSPHGSASWSASLRFESPT 382
Y ++ + +L S T
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRSGT 416
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 6e-49
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 48/381 (12%)
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
N DS Y V ++ LR + V S+ I +
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDL----GCALRPQS-SGTVYEAAAVEVDVSASITLQ 69
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
V ++ W S++ + S+ + + AGEY+ ++
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ T++++ + R R +D +C E P P W+L ++ +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESP 188
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
+ + + T I C N G + R
Sbjct: 189 -----AVVKKEE--KVLHELFGT----DIRCCARNELGRECTRLFTIDL------NQTPQ 231
Query: 298 FGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTG---------DGS 345
L + +RC+ + W + + G ++
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
++ V + D+G YTC SA + Y +
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGF----INATNSSEDYEIDQYEEF 344
Query: 406 LVNQTANG---LTLAWSRNNQ 423
+ + W+ + +
Sbjct: 345 CFSVRFKAYPQIRCTWTFSRK 365
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 4e-41
Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 13/195 (6%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN- 62
L + + + G+ + C + L W+ ++ N +
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 63 ------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS--AS 114
+ + D G Y C A++ ++ K +I
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
F + W + P ++ + S+ GEY+ AEN
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 175 GKISASATLTVQMAP 189
+ + TL ++
Sbjct: 402 AQFTKMFTLNIRSGT 416
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 5e-21
Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 52/293 (17%)
Query: 157 DVRLEDAGEYVC----EAENAVGKISASA-------------TLTVQMAPIVRERPSDLR 199
+ +D C N +S+ L Q + V E + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE-AAAVE 59
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
++V ++ S W+ + + P + N G+ + I ++
Sbjct: 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-------RGVVSMVILKMTE 112
Query: 260 TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
T A L + A + ++++ + + ++ L C
Sbjct: 113 TQAG-EYLLFIQSEATNYTILFTVSIRN-----TLLYTLRRPYFR-KMENQDALVCISES 165
Query: 320 EG--SVQWWR--GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
V+W + E V VL ++ D C ++ G
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLF 222
Query: 376 LRFESPTNPNIGFFRAPEPSTY--PGPPTKPTLVNQTANG---LTLAWSRNNQ 423
+ T + P + G P + + + L W N+
Sbjct: 223 TIDLNQT------PQTTLPQLFLKVGEPL--WIRCKAVHVNHGFGLTWELENK 267
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 2e-65
Identities = 63/417 (15%), Positives = 118/417 (28%), Gaps = 51/417 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
+ + +S + L+ C P PE T K R + I
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRC--PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 66 QDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFE 120
+ ++ C V + S +L+V P + +
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVT 232
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED---------RMSVLPSRSLQLSDVRLEDAGEYVCEA 170
C++ + + WKR S + +L +S R+ D+G ++C A
Sbjct: 233 CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292
Query: 171 ENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227
N G + + TL V + P + + + G + + E P P + N
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 228 RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVS 286
R+ + + E ++ L + + T L N+ + ++ V
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG--TYTFLVSNSDVNAAIAFNVYV- 409
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQW-WRGEREVGSGPRV----- 338
N P IL T L+C G ++ W + E V
Sbjct: 410 ----NTKPEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDV 459
Query: 339 ---------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + +G C + G S + F+ I
Sbjct: 460 QTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI 516
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 185 bits (470), Expect = 3e-50
Identities = 58/402 (14%), Positives = 98/402 (24%), Gaps = 56/402 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V GD L C + W EN +
Sbjct: 39 IHPGKSDLIVRVGDEIRLLC-----TDPGFVKWTFEILDETNENK-------QNEWITEK 86
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ T+ G+Y C K+ + V + + + + C +
Sbjct: 87 AEATNTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142
Query: 128 VLTVHWKRL-GSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVG-KISASATL 183
V K G +P+D R P + + V R C + +S L
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL 202
Query: 184 TV----QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
V + P+V + L G + C I+ N
Sbjct: 203 KVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSW 262
Query: 240 IQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + L I + C N GS +L V
Sbjct: 263 HHGDFNYERQATLTISSARVNDSGVFM-------CYANNTFGSANVTTTLEV-----VDK 310
Query: 294 PVILFGP---ANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGP--------RVN 339
I P + L + QW R N
Sbjct: 311 GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN 370
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ L LT + + G YT +V + +A+ + ++ +
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-44
Identities = 53/326 (16%), Positives = 96/326 (29%), Gaps = 37/326 (11%)
Query: 72 DDGRYQCVV----KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ CV+ + G+ + + P I G D V I C+ G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-- 62
Query: 128 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
V W D + + G+Y C ++ + S + V+
Sbjct: 63 --FVKWTF----EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD 113
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ L + D + C + P + + + + R D
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLR-------FIPD 165
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
+ I++V R L + C S L + L V P PV+ A+ L
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFKAVPVVSVSKASYLLR 224
Query: 307 LRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVT--------GDGSLVLTDVTKED 355
E + C ++ W R + + N +L ++ D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 356 SGEYTCVVKSPHGSASWSASLRFESP 381
SG + C + GSA+ + +L
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDK 310
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-30
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 31/213 (14%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTN---- 62
F + + V G+ L P+P W + + + +N
Sbjct: 316 FPMINTTVFVNDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L + + T+ G Y +V N + V KP I+ + + +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKPEILTYDRLVNG------MLQ 427
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR----------------SLQLSDVRLEDAG 164
C G T+ W SVLP + + G
Sbjct: 428 CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNG 487
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
C+A N VGK SA + + P
Sbjct: 488 TVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 2e-19
Identities = 36/278 (12%), Positives = 68/278 (24%), Gaps = 42/278 (15%)
Query: 159 RLEDAGEYVCE----AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
A +++C G S + P + SDL + VG + LC
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC--TD 60
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNA 273
W E E + N + T C +
Sbjct: 61 PGFVK--WTFEILD--------------ETNENKQNEWITEKAEATNTG--KYTCTNKHG 102
Query: 274 AGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGE--R 330
+ + V P + + ++ +RC + E + +G +
Sbjct: 103 LSN---SIYVFVRD-----PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGK 154
Query: 331 EVGSGPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389
+ R +++ V + C V S S +
Sbjct: 155 PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPV 213
Query: 390 RAPEPSTYPGPPTKPTLVNQTANG----LTLAWSRNNQ 423
+ ++Y + V T + W R N
Sbjct: 214 VSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 6e-65
Identities = 57/297 (19%), Positives = 99/297 (33%), Gaps = 32/297 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
+ + ++ G++ C G PE + G I + + +G L
Sbjct: 6 QVTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKII-STQRVVVQKEGVRSRLT 63
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
I ++ D G Y+C + G + VL + K C V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 125 GDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISAS 180
V W + + ++R ++L + +LQ+ ++ D G Y CE A G+I
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 183
Query: 181 ATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ + P + ++ + E G + F C GSP P+ W G I ++
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL--IEENEKY 241
Query: 238 DNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
I L ++N+ C N AG D +A L V
Sbjct: 242 ------ILKGSNTELTVRNIINSDGGPYV-------CRATNKAGEDEKQAFLQVFVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-56
Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 21/299 (7%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RS 152
+ + +S F C+ G+ + G + R+ V
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
L + + +EDAG Y C+A +A G+ A+ L + RE S + G DA +C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG 270
+ SP P+ W+ +R + ++ L+I N++++ I C G
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRF-----AMLANNN--LQILNINKSDEG--IYRCEG 172
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG 328
A ++ + V P P + N T E C+ G E ++ W+R
Sbjct: 173 RVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 231
Query: 329 EREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + + + G L + ++ D G Y C + G A L+ +
Sbjct: 232 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ--HHH 288
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 173 bits (439), Expect = 2e-48
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 6/188 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
FR Q G+ A + C P P + W + + + R ++ NL I
Sbjct: 100 TFREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 158
Query: 67 DSRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECSV 123
+ K+D+G Y+C + A G + D ++ V V P I + + T + F C
Sbjct: 159 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218
Query: 124 GGDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181
G + W R G + E ++ + S L + ++ D G YVC A N G+ A
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 182 TLTVQMAP 189
L V +
Sbjct: 279 FLQVFVQH 286
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 47/253 (18%), Positives = 79/253 (31%), Gaps = 38/253 (15%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V S + L VG F C G P ++ +G I RV + +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG--EKIISTQRV-----VVQKE 56
Query: 248 GMN-LLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTL 305
G+ L I N + A I C +A G A L + + Q
Sbjct: 57 GVRSRLTIYNANIEDAG-IYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEF 110
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTC 361
+A + C+V +V W EV + R + + +L + ++ K D G Y C
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
Query: 362 VVKSP-HGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANGL 414
+ G + + + P S + A+G
Sbjct: 171 EGRVEARGEIDFRDIIVIVNV---------PPAISMPQKSFNATAERGEEMTFSCRASGS 221
Query: 415 ---TLAWSRNNQI 424
++W RN ++
Sbjct: 222 PEPAISWFRNGKL 234
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + G+ C G PEP + W +NG I+ EN K + T L ++
Sbjct: 196 SMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVR 253
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+ +D G Y C N AG E A L+V V+ +
Sbjct: 254 NIINSDGGPYVCRATNKAGEDEKQ-AFLQVFVQHHH 288
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 9e-65
Identities = 67/379 (17%), Positives = 119/379 (31%), Gaps = 42/379 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F S V D L C P T +W N + +L + T L +
Sbjct: 292 FITSNNSNPVEDEDAVALTC-EPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRT-LTLLS 348
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSVGGD 126
+ D G Y+C ++N S +L VL P P T + C +
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN 408
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G+ ++ L +S++ +++G Y C+A N+ S + T+
Sbjct: 409 PPAQYSWLIDGN-------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Query: 187 MA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
++ + +E F C E +W+ N + R+
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV---NGQSLPVSPRL----- 513
Query: 243 EITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGP 300
S+G L + NV+R A + C N+ ++ + +L V P + P
Sbjct: 514 -QLSNGNRTLTLFNVTRNDARAYV--CGIQNSVSANRSDPVTLDVLY----GPDTPIISP 566
Query: 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + + L C W L + +T ++G
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT--------QVLFIAKITPNNNGT 618
Query: 359 YTCVVKSPHGSASWSASLR 377
Y C V + + S
Sbjct: 619 YACFVSNLATGRNNSIVKS 637
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 3e-60
Identities = 66/426 (15%), Positives = 125/426 (29%), Gaps = 44/426 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
S+ V D C P T +W N + +L + T L + +
Sbjct: 114 SISSNNSKPVEDKDAVAFTC-EPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT-LTLFN 170
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGD 126
+ D Y+C +N R S +L VL P P +T+ + + C +
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G+ ++ L + ++ + ++G Y C+A N+ ++ + T+
Sbjct: 231 PPAQYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Query: 187 M----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
+ + +E C E +W+ N + R+
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV---NNQSLPVSPRL----- 335
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPA 301
++++D L + +V+R C N D + L V P P+
Sbjct: 336 QLSNDN-RTLTLLSVTRNDVGPYE-CGIQNELSVDHSDPVILNVLY----GPDDPTISPS 389
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEY 359
L C W L ++++T+++SG Y
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------QELFISNITEKNSGLY 441
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLA 417
TC + S + + ++ P T
Sbjct: 442 TCQANNSASGHSRTTVKTITVS--AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL 499
Query: 418 WSRNNQ 423
W N Q
Sbjct: 500 WWVNGQ 505
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 6e-58
Identities = 83/451 (18%), Positives = 131/451 (29%), Gaps = 55/451 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------------F 49
+ ++ VA G LL W K
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK--PYIIRGPK 107
S R + +L IQ+ + D G Y V E RV + I
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEY 166
V + F C + W S R+ + +R+L L +V D Y
Sbjct: 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 167 VCEAENAVG-KISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
CE +N V + S S L V P + G + C +PP W +
Sbjct: 180 KCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284
G S L I N++ + C N+ T
Sbjct: 240 NGTF---------------QQSTQ--ELFIPNITVNNSGSYT-CQAHNSDTGLNRTTVTT 281
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGD 343
++ P P I + + L C+ + + WW + + PR+ ++ D
Sbjct: 282 ITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND 340
Query: 344 G-SLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNIGFFRAPEPSTYPGP 400
+L L VT+ D G Y C +++ S L P +P I PS
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTI------SPSYTYYR 394
Query: 401 PTKPTLVNQTANG---LTLAWSRNNQIGSSS 428
P ++ A +W + I +
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 7e-42
Identities = 53/294 (18%), Positives = 79/294 (26%), Gaps = 49/294 (16%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ P G L C +P W +G+ L I +
Sbjct: 384 PTISPSYTYYRPGVNLSLSC-HAASNPPAQYSWLIDGNIQQ----------HTQELFISN 432
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI----IRGPKDTTVSASSIIVFECSV 123
+ + G Y C N A T V + V + I V + F C
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP 491
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKI-SASA 181
+ W S R+ + R+L L +V DA YVC +N+V S
Sbjct: 492 EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 182 TLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
TL V P P D G + C +P P W + G
Sbjct: 552 TLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING-------------- 597
Query: 241 QAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ L I ++ C N A +++
Sbjct: 598 -IPQQHTQV--LFIAKITPNNNGTYA-------CFVSNLATGRNNSIVKSITVS 641
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 4e-59
Identities = 76/304 (25%), Positives = 120/304 (39%), Gaps = 34/304 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
F +PK Q +G A C G P+P + W K G ++ + + + + L I
Sbjct: 9 FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 66 QDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSII 117
Q R D Y+CV +N G A L VL + P I GP+ V +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 118 VFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
C+ G+ + W + + + R+ L S +LQ+ D G+Y C A N+
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 174 VG-KISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
G + S+ A L V+ +AP P + G + C GSP P WM
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAED- 245
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ P D + G N+L++ +V +A C+ +++ G A A +TV
Sbjct: 246 -LTPEDDM--------PVGRNVLELTDVKDSA---NYTCVAMSSLGVIEAVAQITVKSL- 292
Query: 290 PNPP 293
P
Sbjct: 293 PKAG 296
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 4e-56
Identities = 71/311 (22%), Positives = 109/311 (35%), Gaps = 40/311 (12%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PS 150
P I+ PKD + + F C GD V W + G + R +
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 151 RSLQLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM-------APIVRERPSDLRLEV 202
L++ +R D Y C A+N+VG+I+ A LTV P + P +E
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR--- 259
R A LC G+P P W + + P I+ G L+I++
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLP--VDPSASNGRIK--QLRSGA--LQIESSEETDQ 176
Query: 260 ---TAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
C+ N+AG + A+L V + P P + + + C
Sbjct: 177 GKYE-------CVATNSAGVRYSSPANLYVRVQNV--APRFSILPMSHEIMPGGNVNITC 227
Query: 316 QVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
G V+W +G ++ + V G VL +DS YTCV S G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAV 284
Query: 374 ASLRFESPTNP 384
A + +S
Sbjct: 285 AQITVKSLPKA 295
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 3e-53
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLVDGTNLAI 65
+ P+ + V TA + C G+P+P + W K+ P+D S R++ + L I
Sbjct: 110 NIDMGPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI 168
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECS 122
+ S +TD G+Y+CV N AG R S+ A L V V+ P P + + C
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV 228
Query: 123 VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182
G + V W + + + +P L ++D+ Y C A +++G I A A
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPED--DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQ 286
Query: 183 LTVQMAPIVRERPSD 197
+TV+ P +
Sbjct: 287 ITVKSLPKAGTKHHH 301
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T + P + P D G A F+C G P P W +G + R + I+ +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFD 58
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD--PNPPPVILFGPA 301
++ +L+IQ + + C+ N+ G A LTV D P+ P I GP
Sbjct: 59 ESAGA--VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ 116
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDS 356
+ + A + C G + + W++ V S R+ G+L + + D
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 357 GEYTCVVKSPHGSA-SWSASL 376
G+Y CV + G S A+L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT----GDGSL 346
PP + P +Q A CQ G+ V W + ++V S + L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 347 VLTDV-TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
+ + T D Y CV ++ G + A L GF P+ GP K
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMGPQLKVV 120
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
+T A+G + W ++
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFL 147
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 3e-58
Identities = 69/323 (21%), Positives = 109/323 (33%), Gaps = 39/323 (12%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G + + +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL----KYRIQEFK 58
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
G + L I +V+ A + N GS ASL V P P L G
Sbjct: 59 GGYHQLIIASVTDDDA-TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 307 LRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGS----LVLTDVTKEDSGEYT 360
++ G+ + W +G+ + + V S + V ++D+G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 361 CVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420
K+ G + L P PP + + + + + L W+
Sbjct: 178 VCAKNRFGIDQKTVELDVADV----------------PDPPRGVKVSDVSRDSVNLTWTE 221
Query: 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTF 480
G S + Y VE T W+RV TV NL +Y F
Sbjct: 222 PASDGGSKITNYIVEKC-----------ATTAERWLRVGQ-ARETRYTVINLFGKTSYQF 269
Query: 481 LVRALNSHGLSAPSPLSDEIVLR 503
V A N GLS PS S+ + +
Sbjct: 270 RVIAENKFGLSKPSEPSEPTITK 292
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-41
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTN--L 63
F+ + ++ V A L C GHP+P + W + G I + K R++ G L
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-----IRGPKDTTVSASSIIV 118
I D YQ N G+ T A L V V I + G ++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 119 FECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSRS----LQLSDVRLEDAGEYVCEAENA 173
+ G + W++ + V+ +RS + + V +DAG YV A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 174 VGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFL 209
G + L V P + P +++ +V RD+V L
Sbjct: 184 FGIDQKTVELDVADVP---DPPRGVKVSDVSRDSVNL 217
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-34
Identities = 45/213 (21%), Positives = 67/213 (31%), Gaps = 30/213 (14%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSR-- 151
+ P+ ++ V S C V G V W R G + D R+
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR-----ERPSDLRLEVGRDA 206
L ++ V +DA Y A N G +S +A+L V++ + E + G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
G P P W + LI Q +T +L+ V R
Sbjct: 123 SIKIPFSGKPDPVITWQKGQD--LIDNNGH---YQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 261 AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
N G D L V+ P+PP
Sbjct: 178 -------VCAKNRFGIDQKTVELDVADV-PDPP 202
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 16/205 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
+ G+ ++ P G P+P + W+K ID ++ + +
Sbjct: 107 TLEGMGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FECS 122
+ D G Y KN G + T L V P RG K + VS S+ + S
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKT-VELDVADVPDPPRGVKVSDVSRDSVNLTWTEPAS 224
Query: 123 VGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY---VCEAENAVGKI 177
GG + V + E + V +R + + + L Y V AEN G
Sbjct: 225 DGGSKITNYIVEKCATTA---ERWLRVGQARETRYTVINLFGKTSYQFRVI-AENKFGLS 280
Query: 178 SASATLTVQMAPIVRERPSDLRLEV 202
S + + R + EV
Sbjct: 281 KPSEPSEPTITKEDKTRAMNYDEEV 305
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+P +++D ++ SV L W P I Y + + + + T
Sbjct: 200 DPPRGVKVSD---VSRDSVNLTWTEP-ASDGGSKITNYIVEKCATTAERWLRVGQARET- 254
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+ NL Y + A N+ G S P+ ++T + R
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTR 297
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 4e-57
Identities = 68/324 (20%), Positives = 108/324 (33%), Gaps = 45/324 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
Q + +GD L C PP G P VW K+G + S+R+ + L + +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLVGPQR-LQVLN 67
Query: 68 SRKTDDGRYQCVVKNVAGT--------------------RESTDAVLRVLVKPYIIR--- 104
+ D G Y C + + + PY R
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 105 -GPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSR-SLQLSDV 158
K V A++ + F C G+ ++ W + + + + SL + V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ-----MAPIVRERPSDLRLEVGRDAVFLCGIE 213
D G Y C EN G I + TL V + P++ +G D F C +
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 214 GSPPPSTFWM--LEGNRSLIYPGDR-----VDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
P W+ +E N S + P + A T + +L + NV+ A
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 267 LCLGVNAAGSDLARASLTVSGPDP 290
CL N+ G A L V +
Sbjct: 308 -CLAGNSIGFSHHSAWLVVLPAEE 330
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-48
Identities = 68/328 (20%), Positives = 104/328 (31%), Gaps = 62/328 (18%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
+ + + C GG + W + G+ + ++ + LQ+ +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 159 RLEDAGEYVCEAENAVG---------------------KISASATLTVQMAP----IVRE 193
ED+G Y C + A T AP R
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253
L + F C G+P PS W+ G R+ I+ L
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRGEHRIGGIKLR---HQQWSLV 183
Query: 254 IQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+++V T C+ N GS +L V P+ P + PANQT L
Sbjct: 184 MESVVPSDRGNYT-------CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 308 RSEARLRCQVRG--EGSVQWWRGEREVGS----------------GPRVNVTGDGSLVLT 349
S+ C+V + +QW + GS G L L
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLR 377
+VT ED+GEYTC+ + G + SA L
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-43
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 26/208 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--L 63
R+ K V A +T C P G+P P++ W KNG E+ + L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
++ +D G Y CVV+N G+ T L VL + P + T S +
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 119 FECSVGGDAVLTVHWKR----LGSAMPED-------------RMSVLPSRSLQLSDVRLE 161
F C V DA + W + GS + D + L L +V E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAP 189
DAGEY C A N++G SA L V A
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 6/117 (5%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSL 346
P L C G G W + + RV V G L
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRL 63
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT--NPNIGFFRAPEPSTYPGPP 401
+ + + EDSG Y+C + + ++P+ + G A + G P
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 8e-57
Identities = 63/505 (12%), Positives = 124/505 (24%), Gaps = 78/505 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + V + L+ + +W ++ + L+ ++ I
Sbjct: 50 GTVYEAAAVEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+T G Y +++ A + + + C
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYFRKMENQ-DALVCISESV 166
Query: 127 AVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASAT 182
V W S + E+ +V+ L + + C A N +G+ + T
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFT 223
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ + P L L+VG C + W LE +
Sbjct: 224 IDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
T + + +V+R T C A +T+
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYT-------CSSSKHPSQS---ALVTIVE-----KGF 326
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEG----SVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
I +++ + VR + W + + + S+
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-LDNGYSISKFCN 385
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST-------YPGPPTKP 404
K GEY ++ + +L P + S YP P
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMFTLNIRRK--PQV--LAEASASQASCFSDGYPLP---- 437
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS 464
+ W + + S + E + G + S
Sbjct: 438 ----------SWTWKKCSDK-SPNCTEEITEGVWNRKANRKVFGQWVS-----------S 475
Query: 465 PILTVTNLTVGLTYTFLVRALNSHG 489
L ++ G A NS G
Sbjct: 476 STLNMSEAIKGFLVK--CCAYNSLG 498
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 5e-54
Identities = 47/316 (14%), Positives = 91/316 (28%), Gaps = 29/316 (9%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-- 61
L + + + G+ + C + L W+ ++ N +
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 62 -----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR--GPKDTTVSAS 114
+ + D G Y C A++ ++ K +I +D +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
F + W + P ++ + S+ GEY+ AEN
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
+ + TL ++ P V S + C +G P PS W ++S
Sbjct: 402 AQFTKMFTLNIRRKPQVLAEASASQAS--------CFSDGYPLPSWTWKKCSDKSPNCTE 453
Query: 235 DRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ + + + + N+S ++ C N+ G+ L G
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG--- 510
Query: 291 NPPPVILFGPANQTLP 306
P P I G
Sbjct: 511 -PFPFIQDGGTKHHHH 525
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 3e-51
Identities = 45/401 (11%), Positives = 94/401 (23%), Gaps = 62/401 (15%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ + L C PEP + W + + +V + +
Sbjct: 144 TLRRPYFRKMENQDALVC-ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL- 201
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
+C +N G + + + P + + C +
Sbjct: 202 --FGTDIRCCARNELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 129 LTVHWKRLGSAMPE----------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
+ W+ A+ E +++ +S V D G Y C + +
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-- 315
Query: 179 ASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
SA +T+ + D ++ + F + P W +
Sbjct: 316 -SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW--------TFSRKS 366
Query: 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVI 296
Q + + + + + N +L + P +
Sbjct: 367 FPCEQKGLDNGY--SISKFCNHKHQP-GEYIFHAENDDAQFTKMFTLNI-----RRKPQV 418
Query: 297 LFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------------GEREVGSGPRVNV 340
L + C G S W + G + +V
Sbjct: 419 LAEASASQAS--------CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
S L C + G++ + L P
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-41
Identities = 51/382 (13%), Positives = 107/382 (28%), Gaps = 50/382 (13%)
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
N DS Y V ++ + V S+ I +
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQ 69
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
V ++ W S++ + S+ + + AGEY+ ++
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ T++++ + R R +DA+ +C E P P W+L ++ +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQDAL-VCISESVPEPIVEWVLCDSQGESCKEES- 187
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA-SLTVSGPDPNPPPVI 296
A + + L ++ C N G + R ++ + N P
Sbjct: 188 ---PAVVKKEEKVLHELFGTDIR-------CCARNELGRECTRLFTIDL-----NQTPQT 232
Query: 297 LFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTG---------DG 344
L + +RC+ + W + + G ++
Sbjct: 233 T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL 290
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404
++ V + D+G YTC SA + N Y +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINA----TNSSEDYEIDQYEE 343
Query: 405 TLVNQTANG---LTLAWSRNNQ 423
+ + W+ + +
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRK 365
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 1e-16
Identities = 44/363 (12%), Positives = 95/363 (26%), Gaps = 73/363 (20%)
Query: 157 DVRLEDAGEYVC----EAENAVGKISASA-------------TLTVQMAPIVRERPSDLR 199
+ +D C N +S+ L Q + V E + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE-AAAVE 59
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
++V ++ S W+ + + P + N G+ + I ++
Sbjct: 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-------RGVVSMVILKMTE 112
Query: 260 T-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
T A L + A + ++++ + + ++ L C
Sbjct: 113 TQAG--EYLLFIQSEATNYTILFTVSI-----RNTLLYTLRRPYFR-KMENQDALVCISE 164
Query: 319 G--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
E V+W + + S + + + C ++ G +
Sbjct: 165 SVPEPIVEWVLCDSQGESCKE-ESPAVVKKEEKVLHELFGTDIRCCARNELGREC-TRLF 222
Query: 377 RFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL----TLAWSRNNQIGSSSLLGY 432
+ P P+ G +P + A + L W N
Sbjct: 223 TIDLNQTPQT---TLPQLFLKVG---EPLWIRCKAVHVNHGFGLTWELEN---------- 266
Query: 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV---GLTYTFLVRALNSHG 489
+ L +T+ T + V+++ G YT +
Sbjct: 267 ------KALE---EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG-YYT--CSSSKHPS 314
Query: 490 LSA 492
SA
Sbjct: 315 QSA 317
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 2e-55
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
++ + A C +P+P + W +N I +++ +G L I
Sbjct: 9 VITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+DDG Y C N G + L+V +KP I R P + + V C+ G+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 127 AVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLT 184
+V W + SA+ E+ R++VL S SL++ +V+ EDAG+Y C A+N++G S L
Sbjct: 128 PKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
Query: 185 VQ 186
V+
Sbjct: 188 VE 189
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 9e-38
Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 27/202 (13%)
Query: 95 RVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMSVLPSRS 152
++ P I + + F C+V + W R + + R S+ +
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 153 -LQLSDVRLEDAGEYVCEAENAVG-KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
L + V D G Y C A N VG + + L V+M P + P ++++ G AV C
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
G+P PS W+ S + R+ + G L+I NV +
Sbjct: 123 TTMGNPKPSVSWIKGD--SALRENSRI-----AVLESGS--LRIHNVQKEDAGQYR---- 169
Query: 265 IILCLGVNAAGSDLAR-ASLTV 285
C+ N+ G+ ++ L V
Sbjct: 170 ---CVAKNSLGTAYSKLVKLEV 188
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-33
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ AP++ + V A F+C +E P P W + R I
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNK-ILIKLFDTRY-----SI 57
Query: 245 TSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
+G LL I +V + I C N G + +L V P I P N
Sbjct: 58 RENG-QLLTILSVEDSDDG--IYCCTANNGVGGAVESCGALQVKMK-----PKITRPPIN 109
Query: 303 QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+ +A L C G + SV W +G+ + R+ V GSL + +V KED+G+Y
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 361 CVVKSPHGSA-SWSASLR 377
CV K+ G+A S L
Sbjct: 170 CVAKNSLGTAYSKLVKLE 187
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ P + ++ G A+L C G+P+P++ W K + + R+ +++ +L I
Sbjct: 102 KITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSALR--ENSRIAVLESGSLRIH 158
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ +K D G+Y+CV KN GT S L V V
Sbjct: 159 NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 7e-55
Identities = 78/421 (18%), Positives = 147/421 (34%), Gaps = 56/421 (13%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSVLPS 150
+P+II+ K+ T + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 151 R---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
SL + DV+L D+G Y CEA + +G S L ++ AP + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLII 266
C ++ +PP S W + + + N++ ++ +L+I S
Sbjct: 120 ISCDVKSNPPASIHWRRDKLV--LPAKNTT-NLK-TYSTGRKMILEIAPTSDNDFG--RY 173
Query: 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL---RCQVRGEGSV 323
C N G+ L ++ P+ P + +QT A++ + G +
Sbjct: 174 NCTATNHIGTRFQEYILALADV-PSSPYGVKIIELSQT-----TAKVSFNKPDSHGGVPI 227
Query: 324 QWWRGE-REVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
++ + +EV S V G +VL ++ + E + G +S F+
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
+ P P PP + L+ ++ + G + +L Y V+ R
Sbjct: 288 TL------------PVREPSPP-SIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKY--R 331
Query: 440 PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
W+ + + +L + Y + A N G S P+
Sbjct: 332 SKDKEDQ--------WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Query: 500 I 500
+
Sbjct: 384 M 384
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 7e-41
Identities = 60/370 (16%), Positives = 118/370 (31%), Gaps = 56/370 (15%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--------KRLRLVDGT 61
+Q K++ L C G P P + WK+ F + +
Sbjct: 5 IQLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
+L I+D + +D GRY C + G + + L + P I + I C
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISC 122
Query: 122 SVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
V + ++HW+R +P S L+++ D G Y C A N +G
Sbjct: 123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 176 KISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI-YP 233
L + P P +++ E+ + + + P S G + Y
Sbjct: 183 TRFQEYILALADVP---SSPYGVKIIELSQTTAKV---SFNKPDSH-----GGVPIHHY- 230
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL---------CLGVNAAG-SDLARASL 283
+ + + + + + +T L L VN G D ++ +
Sbjct: 231 -----QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285
Query: 284 TVSGPD--PNPPPVILFGPANQTLPL--RSEARLRCQVRG-------EGSVQWWRGEREV 332
+ P P+PP + + ++ L + + + W ++
Sbjct: 286 FQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ 345
Query: 333 GSGPRVNVTG 342
G+ + +
Sbjct: 346 GNKDHIILEH 355
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNL 63
+F G+ + C + +P ++ W+++ + +N+ L+ L
Sbjct: 102 KFISNQTIYYSWEGNPINISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FE 120
I + D GRY C N GTR +L + P G K +S ++ V
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 121 CSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
S GG + V K + S + + S + L+++ E A N G+
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279
Query: 179 ASATLTVQMAPIVRERPSDLRLE 201
S Q P+ P + +
Sbjct: 280 YSKIEIFQTLPVREPSPPSIHGQ 302
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 14/186 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
++ ++ T+ K+++ ++ I + + + + + G + ++ L
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH---GVQTMVVLNNL 259
Query: 608 AHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP 665
+ YE + G G S + +TL P + + S L
Sbjct: 260 EPNTTYEIRVAAVNGKGQ--GDYSKIEIFQTLPVREPSPPSIH-GQPSSGKSFKLSITKQ 316
Query: 666 PVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724
I Y + + V + ++L +L + Y V + A NR G
Sbjct: 317 D--DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGY 374
Query: 725 GPYSRP 730
+
Sbjct: 375 SEPTVY 380
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-IRTYQIIVGGGNNSALINMTVSAST 698
++ + L+ T+ + + P +H GV I YQ+ V + +
Sbjct: 197 SSPYGVKIIE---LSQTTAKVSFNKP--DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
++L NL Y + +AA N G G YS+ + EP
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 4e-52
Identities = 52/325 (16%), Positives = 92/325 (28%), Gaps = 57/325 (17%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS-- 150
+ P+ + V+ ++ +C V + W + + D
Sbjct: 2 IDPFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L +++ +DAG Y ++ GK + L + + D
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
Query: 211 GIEG----------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR 259
EG W G S I DRV + G L+I +
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNG--SAIRYSDRV-----KTGVTGEQIWLQINEPTP 173
Query: 260 ------TAAPLIILCLGVNAAGSDLARASLTVSGPD----------------PNPPPVIL 297
+ L+ D N V+
Sbjct: 174 NDKGKYV-------MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 226
Query: 298 FGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT----GDGSLVLTDV 351
P T+ L C V G+ V W + E+ + S N+ + V
Sbjct: 227 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286
Query: 352 TKEDSGEYTCVVKSPHGSASWSASL 376
+ DSG+Y VVK+ +GS + ++
Sbjct: 287 STADSGKYGLVVKNKYGSETSDFTV 311
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 9e-52
Identities = 58/322 (18%), Positives = 108/322 (33%), Gaps = 57/322 (17%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAIQDS 68
V+ S V LL+C E +VW K+ I ++ DG L I +
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGICTLLITEF 68
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
K D G Y+ ++K+ G +S L ++ +++ + + + G +
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQL 127
Query: 129 L----------TVHWKRLGSAM-PEDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAV 174
V+W GSA+ DR+ + LQ+++ D G+YV E +
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Query: 175 GKISASATLTVQ---------------------MAPIVRERPSDLRLEVGRDAVFLCGIE 213
+ L+ Q A ++ P + ++ G+ C +
Sbjct: 188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247
Query: 214 GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIIL 267
G PPP W+ + D + + I VS
Sbjct: 248 GDPPPEVSWLKNEKA--LASDDH---CNLKFEAGRTAYFTINGVSTADSGKYG------- 295
Query: 268 CLGVNAAGSDLARASLTVSGPD 289
+ N GS+ + +++V P+
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 36/244 (14%), Positives = 64/244 (26%), Gaps = 26/244 (10%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQ 241
+ P E S + + + C + + W + I ++ D
Sbjct: 2 IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHD--- 55
Query: 242 AEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP---NPPPVIL 297
DG+ L I S+ A I + + G D +R L I
Sbjct: 56 ---FKDGICTLLITEFSKKDAG--IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIA 110
Query: 298 FGPANQTLPLRSEA-RLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDG---SLVLTD 350
+ + +E +L V V W + RV G L + +
Sbjct: 111 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE 170
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST---YPGPPTKPTLV 407
T D G+Y + + L ++ F R + +
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230
Query: 408 NQTA 411
T
Sbjct: 231 VVTI 234
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 9e-14
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 24/154 (15%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGD 343
G DP P + + + L+C+V + W++ ERE+ + +
Sbjct: 1 GIDPFTGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 344 G-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+L++T+ +K+D+G Y ++K G L E+ + E
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF--KEL----MMEVCKKIALSA 113
Query: 403 KPTLVNQTANGLTLA-------------WSRNNQ 423
+ TA G+ L WS N
Sbjct: 114 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS 147
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 2e-51
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFE-NSKRLRLVDGT 61
L + RV G +L C PP P+ W N P+ + +R
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---------PYIIRGPKDTTVS 112
NL I + +D G Y C V + + T+ + ++ I+ KD
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172
+ EC G+ V + W+++ MP L++ +++LED G Y CEAEN
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAEN 186
Query: 173 AVGKISASATLTVQ 186
GK A + VQ
Sbjct: 187 IRGKDKHQARIYVQ 200
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 39/210 (18%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSV--GGDAVLTVHWKR----LGSAMPEDRMSVLPSR 151
+ P+ + V +V C L+ W + M + R +
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV----------QMAPIVRERPSDLRLE 201
+L +++V D G Y C + S + + + D+
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
+G++ C G+P P W + I++ G +LKI N+
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVL--EPMPSTAE-------ISTSG-AVLKIFNIQLED 176
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTV 285
C N G D +A + V
Sbjct: 177 EGIYE-------CEAENIRGKDKHQARIYV 199
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-25
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 29/209 (13%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEI 244
+ P E ++R++ G+ V LC P S W+L I R
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR------F 60
Query: 245 TSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPN-----PP 293
S L I NV + C + + + + P P P
Sbjct: 61 VSQTNGNLYIANVEASDKGNYS-------CFVSSPSITKSVFSKFIPLIPIPERTTKPYP 113
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
I+ + + L C G ++W + + S ++ +G L + ++
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNI 172
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFES 380
ED G Y C ++ G A + ++
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 6e-12
Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 18/147 (12%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREV---GSGPRVNVTGDGS 345
P + L C + S +W E V R +G+
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L + +V D G Y+C V SP + S + P +
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERT--TKPYPADIVVQFKDVYA 125
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
L+ Q A G + W + +
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLE 152
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-51
Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 29/226 (12%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNLAIQ 66
R+ K V A +T C P G+P P++ W KNG E+ + +L ++
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 77
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIVFEC 121
+D G Y CVV+N G+ T L VL + P + T S + F C
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 136
Query: 122 SVGGDAVLTVHWKR----LGSAMPED------------RMSVLPSRSLQLSDVRLEDAGE 165
V DA + W + GS + D SV L+L++V D GE
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 166 YVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
Y+C A N +G + L+V E +E
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRAAEEEL----VEADEAGSVHHH 238
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 6e-35
Identities = 54/246 (21%), Positives = 78/246 (31%), Gaps = 40/246 (16%)
Query: 179 ASATLTVQMAP-----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
A V R L + F C G+P PS W+ G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRG 58
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
R+ I+ L +++V T C+ N GS +L V
Sbjct: 59 EHRIGGIKLR---HQQWSLVMESVVPSDRGNYT-------CVVENKFGSIRQTYTLDVLE 108
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGS----------- 334
P+ P + PANQT L S+ C+V + +QW + GS
Sbjct: 109 RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT 168
Query: 335 ----GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFR 390
+V D L L +V++ D GEY C + G A + L P
Sbjct: 169 VLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE 228
Query: 391 APEPST 396
A E +
Sbjct: 229 ADEAGS 234
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 5e-14
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 15/120 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-------------DFENSKR 54
P +Q G C +P + W K+ ++
Sbjct: 117 QAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAS 114
+ L + + + D G Y C N G E L V + + S
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPRAAEEELVEADEAGS 234
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-50
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 24/214 (11%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNL 63
+++ + V A +T C P G+P PT+ W KNG E+ V +L
Sbjct: 20 NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 78
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
++ +D G Y CVV+N G+ T L V+ + P + + +
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANASTVVGGDVE 137
Query: 119 FECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVLPSRSLQLSDVRLEDA 163
F C V DA + W + + ++ + L L +V DA
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
GEY+C+ N +G+ + SA LTV R +
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 3e-35
Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 36/238 (15%)
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
AE+ V + S + + + F C G+P P+ W+ G
Sbjct: 2 AEDFVSENSNNKRAPYWTNTE-KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE- 59
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASL 283
R+ + + L +++V T C+ N GS L
Sbjct: 60 -FKQEHRIGGYKVR---NQHWSLIMESVVPSDKGNYT-------CVVENEYGSINHTYHL 108
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP----- 336
V + P + PAN + + + C+V + +QW + + GS
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 337 ---------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
+N + L L +VT+ D+GEY C V + G A+ SA L P
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 9e-50
Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 7/187 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV---DGTN 62
+ + P ++ G++ C + + W NG + + + D +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS 122
L I ++ D G Y+CVV GT+ +++ K P V C
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 123 VGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
V T+ WK G + R VL + LQ+ ++ D G Y CE
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
Query: 180 SATLTVQ 186
+ V
Sbjct: 184 FKDIQVI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 7e-37
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 29/201 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGS---AMPEDRMSVLP----SR 151
+ P +S F C V GDA + W + + R+SV+ S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L + + ++DAG Y C G A+ + + + + P+ + G DAV +C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
+ S PP+ W +G ++ R + S+ L+I+ + +
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRF-----IVLSNNY--LQIRGIKKTDEGTYR---- 171
Query: 265 IILCLGVNAAGSDLARASLTV 285
C G A ++ + V
Sbjct: 172 ---CEGRILARGEINFKDIQV 189
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 17/196 (8%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V PS + VG FLC + G W L R I D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQR---ISVVWNDD 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTL 305
+ L I N + A I C+ G+ A ++ + + P Q
Sbjct: 60 DSSTLTIYNANIDDAG--IYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEF 112
Query: 306 PLRSEARLRCQVRGE--GSVQWWRGEREV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
+A + C V ++ W R+V R V + L + + K D G Y C
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Query: 362 VVKSPHGSASWSASLR 377
+ ++
Sbjct: 173 EGRILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWR--GEREVGSGPRVNVT----GD 343
+ P+ + + CQV G+ + W+ GE+ + R++V
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNIGFFRAPEPST 396
+L + + +D+G Y CVV + G+ + +++ F+ F AP P
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM-----FKNAPTPQE 111
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 6e-49
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------- 60
F P + A G T L C P + W ++G ++ +S + ++ G
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 61 ---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
+ L I + +D G+YQC+V T S + + PY + P+D TV+A++
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 118 VFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
C G + + W + + L L + CEA NA G
Sbjct: 125 NLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GPQRSLHVPGLNKTSSFSCEAHNAKGV 181
Query: 177 I-SASATLTV 185
S +AT+TV
Sbjct: 182 TTSRTATITV 191
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 30/205 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMP-------------EDRM 145
+ P + T + C + VHW R G + +++
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGR 204
+ L+++ ++L D G+Y C S + ++ P E P D +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 205 DAVFLCGIEGSPPPST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263
C +G P P W+ + PG L + +++T+
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-----------LHVPGLNKTS-- 169
Query: 264 LIILCLGVNAAGSDLARASLTVSGP 288
C NA G +R + P
Sbjct: 170 -SFSCEAHNAKGVTTSRTATITVLP 193
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 6e-22
Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 19/199 (9%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ +P V P ++ G C ++ PP W+ +G + + E
Sbjct: 1 EESPFVGN-PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 245 TSDGMNL---LKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGP 300
D + L+I ++ + CL + +++ + + G P L P
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQ-CLVFLGHQTFVSQPGYVGLEGL-----PYFLEEP 113
Query: 301 ANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSG 357
++T+ + L CQ +G + W + + + P L +
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTS 169
Query: 358 EYTCVVKSPHGSASWSASL 376
++C + G + +
Sbjct: 170 SFSCEAHNAKGVTTSRTAT 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 8e-17
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F +P+ + VAA L C +G PEP + W ++ P+ G ++
Sbjct: 109 FLEEPEDRTVAANTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAPG------HGPQRSLH 161
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ C N G S A + VL
Sbjct: 162 VPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREV------------GSGPR 337
+ P N T LRCQ++ +G V W R + + G +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPST 396
+ L +T + D+G+Y C+V H + S + E P F PE T
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL--PY--FLEEPEDRT 117
Query: 397 YP------------GPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
GPP +P + + + LA + + S
Sbjct: 118 VAANTPFNLSCQAQGPP-EPVDLLWLQDAVPLATAPGHGPQRS 159
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 1e-48
Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 14/204 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
E +P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 8 EIIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 67 D----SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASS 115
DD Y+CV +N G S DA L + P I +GP +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
++ C G+ ++W + + + + L LQ+ + R ED G+Y C AEN++
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 175 GKISASAT-LTVQMAPIVRERPSD 197
G + AT L V++ + +
Sbjct: 187 GTEHSKATNLYVKVRRVGTKHHHH 210
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 1e-34
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 10/207 (4%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T P + +P + + VG A F C G PPPS W G + + R
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNG-KKVSGTQSR---YTVL 57
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNP--PPVILFGP 300
G+++L+I+ V C+ N G + A A+LT+ D P PVI GP
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP 117
Query: 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + + + C+ G ++ W + + +V DG L + + +ED G+
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGK 177
Query: 359 YTCVVKSPHGSA-SWSASLRFESPTNP 384
Y CV ++ G+ S + +L +
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVG 204
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 43/230 (18%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMSVLPSR-S 152
P IIR P++ V + F C+ GD ++ W++ G + + R +VL
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 153 LQLSDV----RLEDAGEYVCEAENAVGK-ISASATLTVQM-------APIVRERPSDLRL 200
+ + + D Y C AEN VG +SA ATLT+ P++ + P +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 201 EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR- 259
EVG + C G+P P+ +W+ N++ + + DG L+I+N
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIK--NQTKVDMSNPR-----YSLKDG--FLQIENSREE 173
Query: 260 -----TAAPLIILCLGVNAAGSDLARAS-LTVSGPDPNPPPVILFGPANQ 303
C+ N+ G++ ++A+ L V V +
Sbjct: 174 DQGKYE-------CVAENSMGTEHSKATNLYV-----KVRRVGTKHHHHH 211
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 1e-47
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 6/184 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 5 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 68 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECSVG 124
K+D+G Y+C + A G + D ++ V V P I + + T + F C
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 125 GDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182
G + W R G + E ++ + S L + ++ D G YVC A N G+ A
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 183 LTVQ 186
L V
Sbjct: 184 LQVF 187
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-34
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 16/193 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLS 156
C V V W + + ++R ++L + +LQ+
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 157 DVRLEDAGEYVCEAEN-AVGKISASATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGI 212
++ D G Y CE A G+I + + P + ++ + E G + F C
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 122
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
GSP P+ W G LI ++ I L ++N+ + + C N
Sbjct: 123 SGSPEPAISWFRNGK--LIEENEKY------ILKGSNTELTVRNIINSDGGPYV-CRATN 173
Query: 273 AAGSDLARASLTV 285
AG D +A L V
Sbjct: 174 KAGEDEKQAFLQV 186
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-33
Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 14/194 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
RE S + G DA +C + SP P+ W+ +R + ++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF-----AMLAN 56
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L+I N++++ I C G A ++ + V P P + N T
Sbjct: 57 NN--LQILNINKSDEG--IYRCEGRVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAE 111
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVV 363
E C+ G E ++ W+R + + + + G L + ++ D G Y C
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRA 171
Query: 364 KSPHGSASWSASLR 377
+ G A L+
Sbjct: 172 TNKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDGSLVL 348
+ Q +A + C+V +V W EV S R + + +L +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
++ K D G Y C + + P I +
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 106
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 3e-47
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 12/190 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
F +S V G TA E G P P + W ++G I +++ L
Sbjct: 7 TFTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFE 120
I K + GRY N +G ST A L V P ++ + TV S + +
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 121 CSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGK 176
V G V + R G+ + + SL +++ ED+G Y A N+VG+
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 177 ISASATLTVQ 186
+++A L VQ
Sbjct: 185 ATSTAELLVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-37
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 30/202 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG-----SAMPEDRMSVLPSR-SL 153
P + + V S FE + G V V W R G S +P ++S R L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLC 210
+ V ++G Y +A N G+ +++A L V+ P +R + + G
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR------TAAP 263
+ G P P + +G + I +I+ +G + L I +
Sbjct: 126 RVTGIPTPVVKFYRDG--AEIQSSLDF-----QISQEGDLYSLLIAEAYPEDSGTYS--- 175
Query: 264 LIILCLGVNAAGSDLARASLTV 285
N+ G + A L V
Sbjct: 176 ----VNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-37
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 15/200 (7%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
+T Q AP + + + G A F I G P P W +G +I
Sbjct: 1 MTTQ-APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQ--VISTSTLPGVQI- 56
Query: 243 EITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
SDG L I V++ + N +G + A L V PP +
Sbjct: 57 -SFSDGRAKLTIPAVTKANSG--RYSLKATNGSGQATSTAELLVK--AETAPPNFVQRLQ 111
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDS 356
+ T+ S+ RL+ +V G V+++R E+ S ++ +G SL++ + EDS
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 357 GEYTCVVKSPHGSASWSASL 376
G Y+ + G A+ +A L
Sbjct: 172 GTYSVNATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-15
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT-----GDGS 345
P + + S A + G V W+R + + + V G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L + VTK +SG Y+ + G A+ +A L ++ T P
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 6e-47
Identities = 51/296 (17%), Positives = 86/296 (29%), Gaps = 29/296 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
P I + V + C G +V W S P +L +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPES-PGSTLTTRNA 58
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPP 217
++ G Y C S + L V+ ++ + G++AV C I
Sbjct: 59 TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118
Query: 218 PST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG-VNAA 274
+ M EG R ++ I+ + + C VN
Sbjct: 119 KDSVSLMREGGRQVLRKTV--------YFFSPWRGFIIRKAKVLDSNTYV--CKTMVNGR 168
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV 332
S L V+ PP I P+ A++ C G +
Sbjct: 169 ESTSTGIWLKVN-RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTK 227
Query: 333 GSGP------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESP 381
P +L L V +D+G Y+CV + G+ + + + + ES
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-45
Identities = 49/288 (17%), Positives = 84/288 (29%), Gaps = 23/288 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V G+T L C ++ W P + + G+ L +
Sbjct: 6 VIEPSGPELVVEPGETVTLRC-----VSNGSVEWDGPISPYWTLDPES----PGSTLTTR 56
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-G 124
++ + G Y+C +T L V + ++ TV V C +
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115
Query: 125 GDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASA 181
+V R G P R + ++ D+ YVC+ S
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175
Query: 182 TLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
L V P ++ PS L G A +C + + G+ L P +
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ L + V A + C+ N G+ A + V
Sbjct: 236 FQDN---YYKKVRALSLNAVDFQDAGIYS-CVASNDVGTRTATMNFQV 279
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 8e-40
Identities = 37/195 (18%), Positives = 59/195 (30%), Gaps = 12/195 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ + + V G A+L C + ++ + G + I+
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT-VYFFSPWRGFIIRK 150
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSV 123
++ D Y C ST L+V P I P CS
Sbjct: 151 AKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA 210
Query: 124 GGDAVLTVHWKRLGSAMPEDRMS-------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
V + G E ++ R+L L+ V +DAG Y C A N VG
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Query: 177 ISASATLTVQMAPIV 191
+A+ V +
Sbjct: 271 RTATMNFQVVESHHH 285
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 5e-13
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-LVLTD 350
P PVI + LRC GSV+W + + ++ GS L +
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVS--NGSVEW---DGPISPYWTLDPESPGSTLTTRN 57
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST------------YP 398
T +++G Y C + S + L + P + + + T
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS---WNLLAQEVTVVEGQEAVLPCLIT 114
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQ 423
P K +++ R
Sbjct: 115 DPALKD----------SVSLMREGG 129
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 9e-47
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 11/185 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NL 63
+ P V+ G L C G EP + W K+G + + + + + L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV 123
+++ ++D GRY C V++ T S L V P+ PKD V ++ C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 124 GGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASA 181
G +T+ W R + + L+ + + + CEA N G S +A
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTA 177
Query: 182 TLTVQ 186
T+ +Q
Sbjct: 178 TVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-31
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 25/195 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SL 153
++ P TVS + CSV G + W + G+ + +P L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 154 QLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
L V DAG Y C+ E+ IS LTV+ P P DL + C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 213 EGSPPPST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271
G P P T W + + ++L + V+++ + C
Sbjct: 123 VGPPEPVTIVWWRGTTK-------------IGGPAPSPSVLNVTGVTQST---MFSCEAH 166
Query: 272 NAAGSDLAR-ASLTV 285
N G +R A++ +
Sbjct: 167 NLKGLASSRTATVHL 181
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 7e-28
Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 21/194 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ P L + G+ C +EG P W+ +G ++ D++ +E
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGA--VVQNLDQLYIPVSEQHWI 59
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
G L +++V R+ A C + +++ LTV G P P + +P
Sbjct: 60 GF--LSLKSVERSDAG-RYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVP 111
Query: 307 LRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVV 363
+ +L C+ G ++ WWRG ++ VL S ++C
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWRG------TTKIGGPAPSPSVLNVTGVTQSTMFSCEA 165
Query: 364 KSPHGSA-SWSASL 376
+ G A S +A++
Sbjct: 166 HNLKGLASSRTATV 179
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 1e-46
Identities = 43/291 (14%), Positives = 81/291 (27%), Gaps = 26/291 (8%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
P I + V + + C G +V W S S S L ++
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-HWTLYSDGSSSILSTNN 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSP 216
++ G Y C SA+ L V+ ++ + +DA+ C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV 117
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAG 275
+ ++ + + + I + C +
Sbjct: 118 LEAGVSLVRVRGRPLMRHTN-------YSFSPWHGFTIHRAKFIQSQDYQ--CSALMGGR 168
Query: 276 SDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGERE 331
+ L V PP + PA A++ C V +
Sbjct: 169 KVMSISIRLKVQ-KVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTK 227
Query: 332 VGSGPRVNVTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ + + + +L L V + +G Y+CV + G S S R
Sbjct: 228 LAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 9e-42
Identities = 43/296 (14%), Positives = 74/296 (25%), Gaps = 35/296 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V G T L C ++ W P + + L+ +
Sbjct: 7 IEPSVPELVVKPGATVTLRC-----VGNGSVEWDGPPSP----HWTLYSDGSSSILSTNN 57
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-GG 125
+ + G Y+C + L V ++ V + C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 126 DAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASAT 182
V R+ M S P + + + +Y C A +S S
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176
Query: 183 LTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
L VQ P + P++L G A +C ++ N L P
Sbjct: 177 LKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + L + V + C+ N G V
Sbjct: 237 HNN---RYQKVLTLNLDQVDFQHAGNYS-------CVASNVQGKHSTSMFFRVVES 282
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 142 bits (358), Expect = 1e-37
Identities = 37/200 (18%), Positives = 54/200 (27%), Gaps = 14/200 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQ 66
+ V + V ALL C E + + G P+ I
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM--RHTNYSFSPWHGFTIH 149
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECS 122
++ YQC S L+V P + P + CS
Sbjct: 150 RAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS 209
Query: 123 V-GGDAVLTVHWKRLGSAMPEDRMSVL------PSRSLQLSDVRLEDAGEYVCEAENAVG 175
D V + + + + S +L L V + AG Y C A N G
Sbjct: 210 ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG 269
Query: 176 KISASATLTVQMAPIVRERP 195
K S S V +
Sbjct: 270 KHSTSMFFRVVESAGNSHHH 289
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-13
Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 21/151 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVT 352
PVI + + LRC G GSV+W + L + T
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRC--VGNGSVEWDGPPSP--HWTLYSDGSSSILSTNNAT 59
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY-------------PG 399
+++G Y C S + L + P P +
Sbjct: 60 FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP----WNVLAQEVVVFEDQDALLPCLLTD 115
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLL 430
P + + G L N
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF 146
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRL---RLVDGTN 62
+ P G+ A + C V + N + R
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCS-ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L + G Y CV NV G ++ RV+
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTS-MFFRVVESAGN 285
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 5e-46
Identities = 59/206 (28%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--NSKRLRLVDGT--- 61
P V + A L C G PEPT+ W K+G P+ S R++ DG
Sbjct: 11 RIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFE 120
+Q ++ D G Y CV KN G S A L++ V + PKDT V+ + E
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 121 CS-VGGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEA 170
C G T+ W + G + + R+ ++ +L +S+V D G Y C A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 171 ENAVGKI-SASATLTVQMAPIVRERP 195
+N VG S+ A L VQ+
Sbjct: 190 QNLVGTRESSYAKLIVQVKAAAHHHH 215
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 7e-32
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKR 54
I++LR++FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK 107
+R+VDG NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-31
Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 29/215 (13%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSL- 153
P II P D V + C V G T+ W + + + + +L
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 154 ---QLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDLRLEVGRDAVF 208
+ + +D GEY C A+N VG+ S A+L + + R P D R+ G A+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 209 LCG-IEGSPPPSTFWMLEGNR-SLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
CG +G P P+ W+ +G + + + I G L I NV
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPIDEGNYK 186
Query: 261 AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
C+ N G+ + A L V
Sbjct: 187 -------CIAQNLVGTRESSYAKLIVQVK-AAAHH 213
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 21/219 (9%)
Query: 181 ATLTVQM-APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
A L Q +P + E P+DL ++ A C +EG P P+ W +G + ++ +
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP--VSTNEKKSH 58
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILF 298
+Q C+ N G ++R ASL ++
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGG-EYWCVAKNRVGQAVSRHASLQIAVL----RDDFRV 113
Query: 299 GPANQTLPLRSEARLRC-QVRG--EGSVQWWRGEREV--------GSGPRVNVTGDGSLV 347
P + + A L C +G E ++ W + + G+ RV + G+L+
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 348 LTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPN 385
+++V D G Y C+ ++ G+ S A L + +
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-45
Identities = 59/314 (18%), Positives = 103/314 (32%), Gaps = 37/314 (11%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPR------GHPEPTLVWKKNGHPIDFENSKRLRL-V 58
K + G+ L C P L W KN + R+
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR----GPKDTTVSAS 114
L + + + D G Y C +N + + LRV P+ T+S S
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTS 137
Query: 115 SIIV---FECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVC 168
++V + + W + + +D +SV + L + DV LEDAG Y C
Sbjct: 138 GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
Query: 169 EAENAVGKISASATLTVQ---------MAPIVRERPSDLRLEVGRDAVFLCGI---EGSP 216
A + T +++ P++ + +G C + G+P
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257
Query: 217 PPSTFWMLEGNRSL--IYPGDRV-DNIQAEITSDGMNL----LKIQNVSRTAAPLIILCL 269
+ W + + YPG RV + + E + + N L V+R + C+
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
Query: 270 GVNAAGSDLARASL 283
N R ++
Sbjct: 318 VHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 4e-44
Identities = 54/328 (16%), Positives = 93/328 (28%), Gaps = 64/328 (19%)
Query: 100 PYIIRGPKDTTVSASSIIVFECS-------VGGDAVLTVHWKRLGSAMP----EDRMSVL 148
+ R K + C + + W + SA E+
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLRLEVGRDA 206
+L L ED+G YVC NA S L V + L +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 207 VFLCG-----IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
V +C W + L+ + ++ G L + +V+
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSL--LLDKDNEK-----FLSVRGTTHLLVHDVALED 191
Query: 260 ----TAAPLIILCLGVNAAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLRSEA 311
C+ A + L + PVI+ + L S
Sbjct: 192 AGYYR-------CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244
Query: 312 RLRCQVR-GEGS----VQWWRG----------EREVGSGPRVNVTGDG------SLVLTD 350
+ C+V G G+ + WW V GPR + + L+
Sbjct: 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP 304
Query: 351 VTKEDSG-EYTCVVKSPHGSASWSASLR 377
VT+ED ++ CVV + + +++
Sbjct: 305 VTREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 89.7 bits (222), Expect = 2e-19
Identities = 39/231 (16%), Positives = 65/231 (28%), Gaps = 45/231 (19%)
Query: 178 SASATLTVQMAPIVRERPSDLRLE-------VGRDAVFLCGI-------EGSPPPSTFWM 223
+ TL G C SP + W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+ PG+ + A+ L + + C NA+ D
Sbjct: 61 KNDSA-RTVPGEEETRMWAQ-----DGALWLLPALQEDSGTYV-------CTTRNASYCD 107
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ-----VRG--EGSVQWWRGER 330
L V + F Q L L + L C R + +QW++
Sbjct: 108 KMSIELRVFEN---TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 331 EV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
+ + ++V G L++ DV ED+G Y CV+ H ++ + E
Sbjct: 165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 301 ANQTLPLR-SEARLRCQVRGEG--SVQWWR--GEREVGSGPRVNVTG-DGSLVLTDVTKE 354
+ + LR + ++ W + R V + DG+L L +E
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91
Query: 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
DSG Y C ++ S LR T+ + F P+
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQ 130
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 164 bits (415), Expect = 7e-45
Identities = 42/300 (14%), Positives = 77/300 (25%), Gaps = 29/300 (9%)
Query: 10 VQPKSQRVAAGDTALLECGPPR--------GHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
+ A G+ +C P + + W+K G R+ +G
Sbjct: 34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR---PLNRRVKNGD 90
Query: 62 NLAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I + D R Y C V G + P I + I
Sbjct: 91 -LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C + + W + + D ++L + + LED+G Y C +I
Sbjct: 150 CGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIK 209
Query: 179 ASATLTVQMAPIVRER---------PSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE 225
++ V + + +G A C + W
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + + L +NV+ C G N ++ +
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITE-ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 1e-35
Identities = 40/333 (12%), Positives = 81/333 (24%), Gaps = 55/333 (16%)
Query: 85 GTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGGDAVL---------TVHWK 134
R++ A + P + G + + +C D++L V+W+
Sbjct: 14 KMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWE 73
Query: 135 RLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVGKI-SASATLTVQMAPIVR 192
++G V + L +++ D+ Y+C G ++ P
Sbjct: 74 KIGKTRRPLNRRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI 132
Query: 193 ERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
+L CGI + W + S
Sbjct: 133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ--ELIIDGT-------KYSQSGQN 183
Query: 252 LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP----DPNPPPVILFGPA 301
L I N C ++ L
Sbjct: 184 LIIHNPELEDSGRYD-------CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 302 NQTLPLRSEARLRCQVRGE------GSVQWWRGEREVGSGPR--------VNVTGDGSLV 347
+ + A + C + W + + +L
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 348 LTDVTKEDSGE-YTCVVKSPHGSASWSASLRFE 379
+VT+E G YTC + + + + ++ E
Sbjct: 297 FENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 6e-32
Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 24/201 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ L CG + W KN + + +K + G NL I +
Sbjct: 131 CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ--SGQNLIIHN 188
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL--------VKPYIIRGPKDTTVSASSIIVF 119
D GRY C V ++ V R + + V+
Sbjct: 189 PELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANI 248
Query: 120 ECSVGGD----AVLTVHWKRLGSAM---PEDRMSVLPSR------SLQLSDVRLEDAGE- 165
C+ + + W+ + S+L S +L +V E G
Sbjct: 249 TCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNT 308
Query: 166 YVCEAENAVGKISASATLTVQ 186
Y C N + + T+ ++
Sbjct: 309 YTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 3e-17
Identities = 43/344 (12%), Positives = 83/344 (24%), Gaps = 44/344 (12%)
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
D + E N + + + + +G C S
Sbjct: 3 DIENEITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHR 62
Query: 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
+ + N + +G L I N + + LC G +
Sbjct: 63 YNDKDNVVNWEKIGKTRRPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDC-VQG 119
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRV 338
+ PP + + L C + ++ W++ +E+
Sbjct: 120 IVRS---HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK 176
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYP 398
+L++ + EDSG Y C V + +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI-------LTVIPSQDHR 229
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS----------PSG 448
+N T IG + + S +
Sbjct: 230 FKLILDPKINVT-------------IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 449 DTATATWVRVATNVPSPILTVTNLT---VGLTYTFLVRALNSHG 489
D + + + + L N+T +G TYT R N +
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYT--CRGHNYYF 318
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 4e-44
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 13/202 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT- 61
P V+ G+ A L C G P PT+ W K G + D S R+ L G+
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSII 117
+ + D+G Y CV +N G S DA L V + + + P D V+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 118 VFECSV-GGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
V EC G T+ WK+ GS + + D + L ++ R DAG+YVC N VG
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 176 KI-SASATLTVQMAPIVRERPS 196
+ S A LTV P + +
Sbjct: 190 ERESEVAELTVLERPSFVKAAA 211
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + + G
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD--DKDERITIRG 164
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
L I +RK+D G+Y CV N+ G RES A L VL +P ++
Sbjct: 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 42/232 (18%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RM 145
++ + P I+ P D VS C G T+ W + G + D
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 146 SVLPSRSLQLSDV-----RLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDL 198
+LPS SL + D G YVC A N +G+ S A+L V + R+ PSD+
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 199 RLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV 257
+ VG AV C G P P+ W +G+ + D G L I
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDER-----ITIRGG--KLMITYT 172
Query: 258 SR------TAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
+ C+G N G + A LTV P + A+
Sbjct: 173 RKSDAGKYV-------CVGTNMVGERESEVAELTV-----LERPSFVKAAAH 212
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-29
Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 22/223 (9%)
Query: 181 ATLTV-QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+L P + E PSDL + G A C EG P P+ W G R +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER--VETDKDDPR 58
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPL----IILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
+ G L + + +C+ N G ++ ASL V+
Sbjct: 59 SHRMLLPSGS--LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL----RD 112
Query: 295 VILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P++ + + A + CQ E ++ W + + G L++T
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYT 172
Query: 352 TKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPE 393
K D+G+Y CV + G S A L + F +A
Sbjct: 173 RKSDAGKYVCVGTNMVGERESEVAELTVLERPS----FVKAAA 211
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-43
Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 31/306 (10%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAIQ 66
R + +A + + C + T+ W K+ P+ E + R+ L
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFV 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP----YIIRGPKDTTVSASSIIVFECS 122
++ D G Y CVV+N + + + Y + + + C
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCP 126
Query: 123 ------VGGDAVLTVHWKRLGSAMPEDRMSVLPSR-SLQLSDVRLEDAGEYVCEAENAVG 175
+ + + W + + D + + L + +V + G Y C A
Sbjct: 127 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Query: 176 KISASATLTVQMA----------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
T ++ IV + +++G +C + G +W
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWN 246
Query: 226 G------NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279
G + L V+N + S + +L I + C N G D A
Sbjct: 247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
Query: 280 RASLTV 285
L
Sbjct: 307 YIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 1e-36
Identities = 51/316 (16%), Positives = 90/316 (28%), Gaps = 62/316 (19%)
Query: 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRL 160
SA+ I V C + + T+ W + S P + L ++
Sbjct: 12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 71
Query: 161 EDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCG----- 211
ED+G Y C N+ + + + +L V D +C
Sbjct: 72 EDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131
Query: 212 -IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
E + P W + + + S + L + NV+ T
Sbjct: 132 KNENNELPKLQWYKDCK--PLLLDNI-------HFSGVKDRLIVMNVAEKHRGNYT---- 178
Query: 265 IILCLGVNAAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLR--SEARLRCQVR 318
C + + PVI+ PAN+T+ + S+ +L C V
Sbjct: 179 ---CHASYTYLGKQYPITRVIEFITLEENKPTRPVIV-SPANETMEVDLGSQIQLICNVT 234
Query: 319 GE--GSVQWWRGEREVGSGPRV---------------NVTGDGSLVLTDVTKED-SGEYT 360
G+ W + V T L ++++ +T
Sbjct: 235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294
Query: 361 CVVKSPHGSASWSASL 376
C K+ HG + L
Sbjct: 295 CFAKNTHGIDAAYIQL 310
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 42/315 (13%), Positives = 82/315 (26%), Gaps = 38/315 (12%)
Query: 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
RE L V C + + T W + +++ + I
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQAS-----RIHQHK-E 62
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
L + C+ N++ + S +P Q LP+ +
Sbjct: 63 KLWFVPAKVEDSGHYY-CVVRNSSYCLRIKISAKFVENEP-NLCYNAQAIFKQKLPVAGD 120
Query: 311 ARLRCQVRGEG--------SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
L C +QW++ + + L++ +V ++ G YTC
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180
Query: 363 VKSPHGSASWSAS----LRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL---T 415
+ + + P +P T + G
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI 240
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
W N + + YS P++ T +L ++ +
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLIT-------------VLNISEIESR 287
Query: 476 -LTYTFLVRALNSHG 489
+ F A N+HG
Sbjct: 288 FYKHPFTCFAKNTHG 302
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-43
Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 17/191 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECG-PPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + L+C H W KNG + + I
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR----KNASNMEYRIN 61
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
R D G Y CV V+ + + A + V P I + + + C G
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKAN--ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119
Query: 127 AVLTVHWKRLGSAMPE------DRMSVLPS---RSLQLSDVRL-EDAGEYVCEAENAVGK 176
W++ + + E R ++ L + ++++ ED GEY C A N++G
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 177 ISASATLTVQM 187
S S L V++
Sbjct: 180 ASVSTVLRVRV 190
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-42
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 5/190 (2%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQL 155
+P I+ + + + +C++ + ++ +W + G + R + ++
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-KNASNMEYRI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
+ R ED+GEY C + V A+AT+ V+ AP + G+DA+ C G
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
P P W + N + I + L I N+ T P C N+ G
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFI-INKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 276 SDLARASLTV 285
S L V
Sbjct: 179 SASVSTVLRV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 41/210 (19%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAE 243
Q P + + + C + S ++W G + A
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE-----------LTAT 49
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGV-----NAAGSDLARASLTVSGPDPNPPPVILF 298
+ +I + G + + A A++ V P I
Sbjct: 50 RKNASNMEYRINKPRAEDS-------GEYHCVYHFVSAPKANATIEVKAA-----PDITG 97
Query: 299 GPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV-----GSGPRVNVTGDG---SLVL 348
++ +A + C+ G W + E V S R + L +
Sbjct: 98 HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI 157
Query: 349 TDV-TKEDSGEYTCVVKSPHGSASWSASLR 377
++ ED GEY C + GSAS S LR
Sbjct: 158 VNLQITEDPGEYECNATNSIGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 6e-15
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV------DG 60
+ +S+ G A++ C G+P P +W+K + + E S +
Sbjct: 94 DITGHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
T L I + + T+D G Y+C N G+ S VLRV V
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVRV 190
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 3e-43
Identities = 86/555 (15%), Positives = 154/555 (27%), Gaps = 107/555 (19%)
Query: 210 CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL 269
+ P + W + G+ + + + I + +I +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAEL-AISTFWPNFYQ---------------VIFEV 141
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWR 327
+ LA + V G P N + A +C G + W
Sbjct: 142 ITSGHQGYLAIDEVKVLGH-PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWL 200
Query: 328 GEREVGSGPR------VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+V P + S + + TK D+G+Y C++++ G + +
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK- 259
Query: 382 TNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
EP P P P L + A L + + N+ G ++ +VE
Sbjct: 260 -----------EP---PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEY----- 300
Query: 442 PSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
TA+ +W V S + +L Y V +
Sbjct: 301 -------CTASGSWNDR-QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALR 351
Query: 502 LRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVK 561
R ++ P R + L+ V + S +
Sbjct: 352 TRTKCAD---------------PM--------RGPRKLE-----------VVEVKSRQIT 377
Query: 562 LTWEILNTDYIEGV-------YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYE 614
+ WE + Y Y G + +T L+ Y+
Sbjct: 378 IRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQ-HTITNLSPYTNVS 436
Query: 615 FFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVI 674
L+ S V+T E P VP + + L+W+ P GVI
Sbjct: 437 VKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVI 493
Query: 675 RTYQII--------VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
Y+I ++ ++ + L L G YS ++ A+ G GP
Sbjct: 494 TLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP 553
Query: 727 YSRPALLSLTSGPEP 741
+ + S P
Sbjct: 554 PATNQFTTKISAPSM 568
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 134 bits (337), Expect = 2e-32
Identities = 110/780 (14%), Positives = 192/780 (24%), Gaps = 169/780 (21%)
Query: 30 PRGHPEPTL-VWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV--VKNVAGT 86
+PT W +G + S R +L + ++ D C+ V+
Sbjct: 31 VNTLTKPTSDPWMPSGSFMLVNASGRPE-GQRAHLLLPQLKEND---THCIDFHYFVSSK 86
Query: 87 RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS 146
S +L V V + W G +
Sbjct: 87 SNSPPGLLNVY-----------------------VKVNNGPLGNPIWNISGDPTRTWNRA 123
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEV 202
L +S + A + V P R ++ +
Sbjct: 124 -----ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNA 178
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
G+ A F C G L+G P I+ + + + N ++ A
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE---IKVTSSRRFIASFNVVNTTKRDA 235
Query: 263 PLIILCLGVNAAGSDLARASLTVSG--PDPNPPPVILFGPANQ-TLPLRSEARLRCQVRG 319
C+ G ++ + V P P PP + A + L + + + G
Sbjct: 236 GKYR-CMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANS-----ING 289
Query: 320 EGSVQWWRGE-REVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVV----KSPHGSASWS 373
+G + E D S + + + EY V G+ S
Sbjct: 290 DGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDT--EYEISVLLTRPGEGGTGSPG 347
Query: 374 ASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR-NNQIGSSSLLGY 432
+LR + + P K +V + +T+ W +
Sbjct: 348 PALRTRTK------------CADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNL 395
Query: 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA 492
V + G V T P T+TNL+ + + +N G
Sbjct: 396 TVHYCYQ------VGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG--- 446
Query: 493 PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552
S E++++ T E+ P +
Sbjct: 447 RKE-SQELIVQ-T--------------DEDLPGAVP-------------------TESIQ 471
Query: 553 KPMTSTSVKLTWEILNTDY--IEGVYIY-----SRGLDPPASVAMLTVLHAGEASGFLVT 605
+ L W Y I I S + S V G + FL
Sbjct: 472 GSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF 531
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTD-PVLLNATSVLLKWKP 664
GL + Y F + G P+ + T PS + P+ +V + KP
Sbjct: 532 GLYPGTTYSFTIRASTAKGFGPPATNQ-FTTKISAPSMPAYELETPLNQTDNTVTVMLKP 590
Query: 665 PPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLT-------------------- 704
+ + YQI+V T + +
Sbjct: 591 AH--SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPAD 648
Query: 705 ----------------------NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
L Y + A +RA ++ P+
Sbjct: 649 SLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPK 708
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-22
Identities = 91/656 (13%), Positives = 170/656 (25%), Gaps = 71/656 (10%)
Query: 29 PPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88
P +W +G P N LAI V+ +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNR--------AELAISTFWPNFYQVIFEVITSGHQGYL 150
Query: 89 STDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL---GSAMPE 142
+ D V + + ++ V+A F+CS G V P
Sbjct: 151 AIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
Query: 143 DRMSVLPSRS----LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDL 198
+ V SR + + DAG+Y C G ++ V P V P L
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL 270
Query: 199 RLEVGRDAVFL---CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
VG +++ P +E + G D + TS KI
Sbjct: 271 A-SVGATYLWIQLNANSINGDGPIVAREVEYCTA---SGSWNDRQPVDSTS-----YKIG 321
Query: 256 NVSR-TAAPLIILCLGVNAAG----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
++ T + +L G R + P P + + ++ + +R E
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWE 381
Query: 311 ARLRCQVRGEG---SVQWWRGEREVGSGPRVNV----TGDGSLVLTDVTKEDSGEYTCVV 363
R +V + +T+++ + +
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSP--YTNVSVKL 439
Query: 364 K--SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRN 421
+P G S L ++ + P PT+ + + L W
Sbjct: 440 ILMNPEGR-KESQELIVQTDEDL---------PG---AVPTESIQGSTFEEKIFLQWREP 486
Query: 422 NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFL 481
Q + Y++ Y + + V N L G TY+F
Sbjct: 487 TQTYGV-ITLYEIT-YKAVSSFDPEIDLSNQSGRVSKLGNETH--FLFFGLYPGTTYSFT 542
Query: 482 VRALNSHGLSAPSPLS-----DEIVLRGTFSEGIFSEGGKGIF-SENFPDEGRGESLRRA 535
+RA + G P+ + E ++ +
Sbjct: 543 IRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQ 602
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLH 595
+E + TE+ V + ++ + + + D + T+
Sbjct: 603 IVVEEERPRRTKKTTEIL--KCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGD 660
Query: 596 AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV 651
+G+ T L Y Y + + + V T +
Sbjct: 661 NKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQ 716
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 2e-09
Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----L 63
++ ++ V AG A +C G G + K +++
Sbjct: 167 HFLRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV--FEC 121
+ ++ K D G+Y+C+++ G S A L V P I P+ +V A+ + +
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNAN 285
Query: 122 SVGGDAVLT---VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY----VCEAENAV 174
S+ GD + V + + + S S ++ L+ EY +
Sbjct: 286 SINGDGPIVAREVEYCTASG--SWNDRQPVDSTSYKIGH--LDPDTEYEISVLLTRPGEG 341
Query: 175 GKISASATLTVQMAPIVRERP 195
G S L + R
Sbjct: 342 GTGSPGPALRTRTKCADPMRG 362
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 8e-43
Identities = 41/206 (19%), Positives = 58/206 (28%), Gaps = 29/206 (14%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P+S+ V AG L C GHP W K I N+ L
Sbjct: 20 KITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNKEIPNGNTSELI--------FN 70
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------------KPYIIRGPKDTTV 111
D G Y C V N S + L V K I P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 112 SASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171
S +V +C G + W + + + + + V LE G Y C
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVY 185
Query: 172 NAVGKISASATLTVQMAPIVRERPSD 197
N + + P +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGHPDN 211
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-32
Identities = 42/244 (17%), Positives = 64/244 (26%), Gaps = 56/244 (22%)
Query: 85 GTRESTDAVLRVLV--KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE 142
G+ LV I P+ V A + C G + W ++ +P
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 143 DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ--------------- 186
+ L + V ++DAG YVC N S + L V
Sbjct: 62 GN-----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P+ +L G V C GSP P W +T
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL---------------PLTH 161
Query: 247 DGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300
+ L + V C N S ++ + N P
Sbjct: 162 ETKKLYMVPYVDLEHQGTYW-------CHVYNDRDSQDSKKVEIIIDELNNLGH-----P 209
Query: 301 ANQT 304
N+
Sbjct: 210 DNKE 213
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-27
Identities = 34/217 (15%), Positives = 56/217 (25%), Gaps = 35/217 (16%)
Query: 173 AVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232
+ ++ V + P + G+ C G P W
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK----- 57
Query: 233 PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGP--- 288
EI + + L V A + C N + ++ + L V
Sbjct: 58 ----------EIPNGNTSELIFNAVHVKDAGFYV-CRVNNNFTFEFSQWSQLDVCDIPES 106
Query: 289 -------DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN 339
I P +Q L S L+C G QW++ E + +
Sbjct: 107 FQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-- 164
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
++ V E G Y C V + S
Sbjct: 165 ----KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 2e-22
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V+P SQ++ G T +L+C G P P W KN P+ E K +
Sbjct: 120 QICVEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNELPLTHETKKLYM--------VP 170
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA 113
G Y C V N +++S + + + P + +
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH-PDNKEQTT 216
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 5e-42
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 15/193 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F+ + ++ V A L C GHP+P + W + G I + K L
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
I D YQ N G+ S A L V V P + G ++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 119 FECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSRS----LQLSDVRLEDAGEYVCEAENA 173
+ G + W++ + V+ +RS + + V +DAG YV A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 174 VGKISASATLTVQ 186
G + L V
Sbjct: 184 FGIDQKTVELDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 4e-37
Identities = 41/205 (20%), Positives = 62/205 (30%), Gaps = 29/205 (14%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLP--SR 151
+ P+ ++ V S C V G V W K + + + R+
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM-----APIVRERPSDLRLEVGRDA 206
L ++ V +DA Y A N G +S +A+L V++ P E + G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
G P P W + LI Q +T +L+ V R
Sbjct: 123 SIKIPFSGKPDPVITWQKGQD--LIDNNGH---YQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 261 AAPLIILCLGVNAAGSDLARASLTV 285
N G D L V
Sbjct: 178 -------VCAKNRFGIDQKTVELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 6e-36
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 13/197 (6%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G I IQ
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKE--IIADGLKYRIQ--EFK 58
Query: 247 DGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G + L I +V+ A + N GS ASL V P P L G
Sbjct: 59 GGYHQLIIASVTDDDAT--VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGS----LVLTDVTKEDSGEY 359
++ G + + W +G+ + + V S + V ++D+G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 360 TCVVKSPHGSASWSASL 376
K+ G + L
Sbjct: 177 VVCAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 6e-16
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDG--S 345
P N + +S A L C+V G + V+W+R +E+ G R+ G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI-GFFRAPEPST 396
L++ VT +D+ Y + GS S +ASL E P ++
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 6e-42
Identities = 39/314 (12%), Positives = 98/314 (31%), Gaps = 42/314 (13%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL 153
+ P+ + + FEC W + + + R+ V +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKMTPKS-EFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM------------APIVRERPSDLR-L 200
D+ ++D G Y C+ + G S+ ++ + + + L
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 201 EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
E G+ ++ + S ++ I+ G + + + + G+ + ++ +
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNE--KEIFEGPKY-KMHID-RNTGIIEMFMEKLQDE 176
Query: 261 -AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG-------------PANQTLP 306
+ ++ + L + +
Sbjct: 177 DEG--TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 234
Query: 307 LRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCV 362
L+C+V E + W++ ERE+ + + +L++T+ +K+D+G Y +
Sbjct: 235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI 294
Query: 363 VKSPHGSASWSASL 376
+K G L
Sbjct: 295 LKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 7e-42
Identities = 45/321 (14%), Positives = 92/321 (28%), Gaps = 55/321 (17%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLA 64
+ + + EC + P+ W K+ E+S RL + + T +
Sbjct: 6 TKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTKMT 61
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL-----------VKPYIIRGPKDTTVSA 113
+D D G Y C V + G S L ++ +
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPED---RMSVLPS---RSLQLSDVRLEDAGEY 166
+ F V++ + E +M + + + + ++ ED G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEV------------------GRDAVF 208
+ ++ ++ L + +++ R E + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 209 LCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLII 266
C + + W + I ++ D DG+ L I S+ A I
Sbjct: 242 KCKVANIKKETHIVWYKDER--EISVDEKHD------FKDGICTLLITEFSKKDAG--IY 291
Query: 267 LCLGVNAAGSDLARASLTVSG 287
+ + G D +R L
Sbjct: 292 EVILKDDRGKDKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 3e-21
Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 27/243 (11%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P +E ++ + F C + +P W + R+ E+ S
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYV--STEDSPRL-----EVES 53
Query: 247 DG-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVS-------GPDPNPPPVIL 297
G + +++ I C + G + + P V +
Sbjct: 54 KGNKTKMTFKDLGMDDLG--IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111
Query: 298 FGPANQTLPLRSEARLRCQV---RGEGSVQWWRGEREVGSGPRVNVTGDG-----SLVLT 349
+ + + R Q G V + E+E+ GP+ + D + +
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+ ED G YT ++ + + L + + P ++
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 410 TAN 412
Sbjct: 232 EVT 234
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 4e-41
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 15/191 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
R + K G+ A L C G P P + W + G + S++ ++ L
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHTL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG---PKDTTVSASSIIVFE 120
+ + D+G Y C+ N G E++ + L + P G + + S +
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 121 CSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS---RSLQLSDV-RLEDAGEYVCEAENAVG 175
G V + W + + +++ + L + +V R AG+Y + N G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 176 KISASATLTVQ 186
+ A + +Q
Sbjct: 185 TVDAILDVEIQ 195
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-35
Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSR-SLQ 154
P I + KD T C + G + + W R G + + R MS +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRER---PSDLRLEVGRDAVFLCG 211
+ ED G Y C A N VG++ S+ L +Q P VG
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR-------TAAP 263
G P P+ W L+ + + I + L ++NV R
Sbjct: 127 YIGRPVPAMTWFHGQ--KLLQNSENI-----TIENTEHYTHLVMKNVQRKTHAGKYK--- 176
Query: 264 LIILCLGVNAAGSDLARASLTV 285
N G+ A + +
Sbjct: 177 ----VQLSNVFGTVDAILDVEI 194
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 19/197 (9%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP +R+ D+ ++G A C I G P P W G + + +++SD
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK--ELIQSRKY-----KMSSD 59
Query: 248 G-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G + L + + + C+ N G + L + P L
Sbjct: 60 GRTHTLTVMTEEQEDEG--VYTCIATNEVGEVETSSKLLLQATPQFHPGYPL--KEKYYG 115
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKE-DSGEY 359
+ S RL G ++ W+ G++ + + + + LV+ +V ++ +G+Y
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Query: 360 TCVVKSPHGSASWSASL 376
+ + G+ +
Sbjct: 176 KVQLSNVFGTVDAILDV 192
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 2e-18
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLV 347
P I + T L A+L CQ+ G ++W+R +E+ + ++ DG +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+ +ED G YTC+ + G S+ L ++ P +PG P K
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------------PQFHPGYPLKEKYY 114
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 7e-18
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTN 62
+ A G T L G P P + W + +NS+ + + T+
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHV-MYIGRPVPAMTWFHGQKLL--QNSENITIENTEHYTH 160
Query: 63 LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L +++ RKT G+Y+ + NV GT ++ + + K
Sbjct: 161 LVMKNVQRKTHAGKYKVQLSNVFGTVDAI-LDVEIQDK 197
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-41
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 20/201 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
F P Q +G A C G P P +VW K G + + + + DG+ L
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 65 IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSI 116
IQ R D Y+CV N G S L VL + P I GP+ V +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPED-------RMSVLPSRSLQLSDVRLEDAGEYVCE 169
C+ G+ + W + + ++ +LQ+ D G+Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 170 AENAVG-KISASATLTVQMAP 189
A N+ G + SA A L V+
Sbjct: 186 ATNSAGTRYSAPANLYVRGTK 206
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 6e-36
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 30/217 (13%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-----S 150
P R P D T + + F C GD + W + G + R V+
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 151 RSLQLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM-------APIVRERPSDLRLEV 202
L++ +R D Y C A N VG+IS S LTV P + P +E
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR--- 259
R A LC G+P P W + + + I+ ++ S+ + L+I+
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLP--VDTSNNNGRIK-QLRSESIGALQIEQSEESDQ 179
Query: 260 ---TAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNP 292
C+ N+AG+ A A+L V G +
Sbjct: 180 GKYE-------CVATNSAGTRYSAPANLYVRGTKHHH 209
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 16/209 (7%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T + P P D G A F+C G P P W +G + + E
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKK--VSNQRF---EVIE 56
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD--PNPPPVILFGPA 301
++L+IQ + I C+ N G LTV D P P I GP
Sbjct: 57 FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQ 116
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP------RVNVTGDGSLVLTDVTK 353
+ + A + C G + + W++ V + ++ G+L + +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 354 EDSGEYTCVVKSPHGSA-SWSASLRFESP 381
D G+Y CV + G+ S A+L
Sbjct: 177 SDQGKYECVATNSAGTRYSAPANLYVRGT 205
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-26
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTN 62
+ P+ + V TA + C G+P+P + W K+ P+D N+ K+LR
Sbjct: 110 TIDMGPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
L I+ S ++D G+Y+CV N AGTR S A L V +
Sbjct: 169 LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-39
Identities = 39/201 (19%), Positives = 61/201 (30%), Gaps = 23/201 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---------NSKRLRLV 58
R+ + L C G P + WK + + +
Sbjct: 7 VHSSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF 65
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
T + + + D G Y C+V G V L VLV P ++ + +
Sbjct: 66 LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRA 125
Query: 118 VFECSV-GGDAVLTVHWKRLGSAMPED-----------RMSVLPSRSLQLSDVRLEDAGE 165
V CS G W + G MP + + + L + D GE
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185
Query: 166 YVCEAENAVGKISASATLTVQ 186
Y CEA N G S + ++
Sbjct: 186 YSCEARNGYGTPMTSNAVRME 206
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 31/214 (14%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRM 145
+ + + ++ + C+ G + V WK EDR+
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTVQMAPIVRERPSDLRLEVG 203
+ LP+ + V ED G Y C G L V + P +G
Sbjct: 64 TFLPT-GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 204 RDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSR-- 259
AV C +GSPP W +G P + + L +S
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ C N G+ + ++ + +
Sbjct: 183 TGEYS-------CEARNGYGTPMTSNAVRMEAVE 209
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-26
Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR--SLIYPGDRVDNIQAEIT 245
+ V ++R+ C G P W + L+ +++ +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
+ + ++V+R C+ G+ + + PP +
Sbjct: 64 TFLPTGITFKSVTREDTG-TYTCMVSEEGGNSYGEVKVKLIV---LVPPSKPTVNIPSSA 119
Query: 306 PLRSEARLRCQVRGEGS----VQWWRGEREVGSGPR----------VNVTGDGSLVLTDV 351
+ + A L C + +GS W++ + + P+ V G LV +
Sbjct: 120 TIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
+ D+GEY+C ++ +G+ S ++R
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 87.7 bits (217), Expect = 1e-19
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------FENSKRLRLV 58
G+ A+L C G P W K+G + F NS +
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L +D G Y C +N GT ++ +R+
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTS-NAVRM 205
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 6e-39
Identities = 59/399 (14%), Positives = 95/399 (23%), Gaps = 58/399 (14%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + P G L C G P T+V + + E +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTT 144
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRE-------STDAVLRVLVKPYIIRGP-KDTTVSASS 115
+ R + C + + S L+ V P + +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 116 IIVFECSVGGD---AVLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDAGEY--VCE 169
CS+ G + VH + P + V ED G C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
T+T+ P + + G + C + +
Sbjct: 265 VILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP-- 322
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL----ARASLTV 285
G R L ++ C L L V
Sbjct: 323 ---LGPRAQ-------------LLLKATPEDNGRSFS-CSATLEVAGQLIHKNQTRELRV 365
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWR-GEREVGSGPRVNVTG 342
P P N T P S+ CQ G ++ + G + G
Sbjct: 366 LYG---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------- 415
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
VT++ G Y C +S G + ++ SP
Sbjct: 416 ----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 3e-31
Identities = 65/454 (14%), Positives = 115/454 (25%), Gaps = 60/454 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCST-SCDQPMLLGIET------PLPKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSVGG 125
S +D + C G + L V P + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 126 ---DAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG------ 175
A LTV R + E + + + R + C E +
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Query: 176 --KISASATLTVQMAPIVRERPS-DLRLEVGRDAVFLCGIEGSPPPST---FWMLEGNRS 229
SA L + P + LEV +C ++G P S L R
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
D+ A+ + + + + C + S ++T+
Sbjct: 233 NPTVTYGNDSFSAKAS--------VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF- 283
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLT 349
P P ++ + +E ++C+ V G GPR L+L
Sbjct: 284 --PAPNVI--LTKPEVSEGTEVTVKCEAHPRAKVTLN-GVPAQPLGPRA------QLLLK 332
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+++ ++C + E + P P N
Sbjct: 333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRE------LRVLYGPRLDERDCPGNWTWPENS 386
Query: 410 TAN---------GLTLAWSRNNQIGSSSLLGYQV 434
L ++ V
Sbjct: 387 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV 420
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 81.5 bits (200), Expect = 3e-16
Identities = 47/306 (15%), Positives = 81/306 (26%), Gaps = 33/306 (10%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
PS + L G + C P + E+ G N
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGI-------------ETPLPKKELLLPGNN 48
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
+ + +C G A+ LTV P + P P+
Sbjct: 49 RKVYELSNVQED-SQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKN 103
Query: 311 ARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
LRCQV G +V RGE+E+ P V + + + ++C +
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163
Query: 366 PHGSASWSASLRFESPTNPNIGFFRAPEPS---TYPGPPTKPTLVNQTANGL------TL 416
+P A P V + +GL +
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
+ +Q + ++ Y + +S S + D T T+ +T+
Sbjct: 224 HLALGDQRLNPTVT-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Query: 477 TYTFLV 482
V
Sbjct: 283 FPAPNV 288
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 2e-38
Identities = 49/307 (15%), Positives = 88/307 (28%), Gaps = 41/307 (13%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAM--------------PE 142
+++ P + C + V + W R G +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 143 DRMSVLPSR--------SLQLSDVRLEDAGEYVCEAENAV-GKISASATLTVQMAPIVRE 193
R+ + +R SL++ +R+ED G Y C G S L V P
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 194 RPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252
++L + C G PP W + P T +L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG---MPNTSQVPGFLSGTVTVTSLW 179
Query: 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEAR 312
+ S+ + C + + ++ ++ P + G N ++EA
Sbjct: 180 ILVPSSQVDGKNVT-CKVEHESFEKPQLLTVNLTVYYPPEVSIS--GYDNNWYLGQNEAT 236
Query: 313 LRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
L C R W + P V L++ V K + C V + G+
Sbjct: 237 LTCDARSNPEPTGYNWSTTMGPL---PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGA 293
Query: 370 ASWSASL 376
++
Sbjct: 294 RQAELTV 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 141 bits (355), Expect = 4e-37
Identities = 57/313 (18%), Positives = 91/313 (29%), Gaps = 48/313 (15%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLV-WKKNGHPID-----------FENS 52
P GD+ L C P + + W ++G + S
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 53 KRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR 104
KRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 105 GPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------SLQLS 156
+ ++ + + C S GG + W MP L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 157 DVRLEDAGEYVCEAENAVGK--ISASATLTVQMA-PIVRERPSDLRLEVGRDAVFLCGIE 213
D C+ E+ + + LTV + + +A C
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 214 GSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
+P P+ + W + + G L I+ V + +I C N
Sbjct: 243 SNPEPTGYNWSTTMGP-----------LPPFAVAQG-AQLLIRPVDKPINTTLI-CNVTN 289
Query: 273 AAGSDLARASLTV 285
A G+ A ++ V
Sbjct: 290 ALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 137 bits (345), Expect = 8e-36
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 11/187 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----- 61
+ + + ++ + C G P + W + + S+ + GT
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP-NTSQVPGFLSGTVTVTS 177
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRVLVK-PYIIRGPKDTTVSASSIIVF 119
+ S + D C V++ + + L V I G + +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 120 ECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C + +W +P +V L + V +C NA+G
Sbjct: 238 TCDARSNPEPTGYNWSTTMGPLPPF--AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
Query: 179 ASATLTV 185
A T+ V
Sbjct: 296 AELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 9e-13
Identities = 27/215 (12%), Positives = 49/215 (22%), Gaps = 32/215 (14%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPST-----FWMLEGNRSLIYPGDRVDNIQAE 243
+V+ P+ + +G C ++ T W G + +
Sbjct: 2 VVVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 244 ITSDGMNLLKIQNVSRTAAPLII-----------LC-LGVNAAGSDLARASLTVSGPDPN 291
+ + A L + C GS L V
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-----L 115
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDG---- 344
P L RC G + W + + +V G
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 345 --SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L ++ D TC V+ ++
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-38
Identities = 49/331 (14%), Positives = 92/331 (27%), Gaps = 47/331 (14%)
Query: 6 EEFRVQPKSQ-RVAAGDTALLECG----------PPRGHPEPTLVWKKNGHPIDFENSKR 54
+++ + Q +V + A ++C TL+W D E
Sbjct: 7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66
Query: 55 LRL------VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP----YIIR 104
RL + L + + D G Y C+++N + L V+ K ++
Sbjct: 67 FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMK 125
Query: 105 GPKDTTVSASSIIVFEC-----SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I C T+ W + + +L
Sbjct: 126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIAL 185
Query: 160 LEDAGEYVCEA----ENAVGKISASATLTVQMAPIVRERP--------SDLRLEVGRDAV 207
+ + G Y C ++ + T+ V +P P E G + +
Sbjct: 186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL 245
Query: 208 FLC----GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN----LLKIQNVSR 259
C +W ++G + D N + +L I+ V+
Sbjct: 246 IPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTS 305
Query: 260 TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+C +A G A + P P
Sbjct: 306 EDLKRSYVCHARSAKGEVAKAAKVKQKVPAP 336
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-30
Identities = 51/318 (16%), Positives = 81/318 (25%), Gaps = 64/318 (20%)
Query: 114 SSIIVFECSVGGDAVLTVHWKRLGS----------AMPEDRMSVLPSRSLQLSDVRLEDA 163
+ F S A LT+ W +PE+R+S L L D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-EKDVLWFRPTLLNDT 91
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIV----RERPSDLRLEVGRDAVFLCG-----IEG 214
G Y C N + L V + P C
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-------AAPLIIL 267
S P+ W + I + + +GMNL +
Sbjct: 152 SVKPTITWYMGCY--KIQNFNN-------VIPEGMNLS-FLIALISNNGNYTCVVTYPEN 201
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL---PLRSEARLRCQVRGEGS-- 322
++ V G N P ++ P + + E + C V
Sbjct: 202 ----GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 323 ----VQWWRGEREVGSGPR-------------VNVTGDGSLVLTDVTKED-SGEYTCVVK 364
V W ++ + T L + VT ED Y C +
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 365 SPHGSASWSASLRFESPT 382
S G + +A ++ + P
Sbjct: 318 SAKGEVAKAAKVKQKVPA 335
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 9e-16
Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 56/317 (17%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
F S + W + + I+ + ++L +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK-DVLWFRPTLLND 90
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
T C+ N L V D + P ++ R+ C
Sbjct: 91 TGNYT-------CMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL-PVHKLYIEYGIQRITC 142
Query: 316 -----QVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
+ ++ W+ G ++ + V G +L ++G YTCVV P
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPEN 201
Query: 369 SASWSASLRF-----ESPTNPNIGFFRAP-EPSTYPGPPTKPTLVNQTANGLTLA----- 417
++ + SP N +P + Y P + L+ T L
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261
Query: 418 --WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV- 474
W+ + + + + S +T T L++ +T
Sbjct: 262 VWWTIDGKKPDDI---TIDVTINESISHSRTEDETRTQI------------LSIKKVTSE 306
Query: 475 --GLTYTFLVRALNSHG 489
+Y A ++ G
Sbjct: 307 DLKRSYV--CHARSAKG 321
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 5e-37
Identities = 36/278 (12%), Positives = 82/278 (29%), Gaps = 22/278 (7%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
+ T +L C G +VW++ E +K + L + + D G Y
Sbjct: 12 LNVSSTFVLTC---SGSAP--VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 77 QCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSAS--SIIVFECSVGGDAVLT 130
C + G L + V ++ ++ + + + I C V D L
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLV 125
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-- 188
V + Q + + Y+C+ ++ + A ++
Sbjct: 126 VTLHEKKGDVALPV-----PYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180
Query: 189 -PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V + G + +C + G+ + W S + V + ++
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR-LVEPVTDFLLDMPYH 239
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
++L I + + C + ++ +
Sbjct: 240 IRSILHIPSAELEDSGTYT-CNVTESVNDHQDEKAINI 276
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 44/297 (14%), Positives = 80/297 (26%), Gaps = 44/297 (14%)
Query: 102 IIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSRSLQLSD 157
++ P ++ SS V CS V W+R+ P++ S L L++
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTN 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLT-----VQMAPIVRERPSDLRLEV--GRDAVFLC 210
+ D GEY C ++ G + + +L + + + C
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPC 117
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
+ T +G+ +L + D R+ +C
Sbjct: 118 RVTDPQLVVTLHEKKGDVAL------------PVPYDHQRGFSGIFEDRS-----YICKT 160
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRG 328
+ A + + L C V G + +W
Sbjct: 161 TIGDREVDSDAYYVYR--LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 329 EREVGSG--------PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+E G + L + EDSG YTC V ++
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 27/190 (14%), Positives = 45/190 (23%), Gaps = 25/190 (13%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
+ + C P+ + + + + S +D Y
Sbjct: 107 LTEITEITIPCRV--TDPQLVVTLHEKKGDVALPVPYDHQ--------RGFSGIFEDRSY 156
Query: 77 QCVVKNVAGTRESTDAVLRVLV--KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWK 134
C +S + L + T V I C V G+ V+ W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT 216
Query: 135 RLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
M L + LED+G Y C +V + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Query: 186 QMAPIVRERP 195
V E
Sbjct: 277 T----VVESG 282
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 5e-10
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
V V G+ L C G+ W +
Sbjct: 183 NVSVNAVQTVVRQGENITLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYI 102
L I + D G Y C V + A+ + V+ +
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHH 284
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-08
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 302 NQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG--DGSLVLTDVTKEDSGEY 359
L + S L C G V W R +E G L LT++T D+GEY
Sbjct: 9 ELVLNVSSTFVLTC--SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C G + + +P +GF
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL 103
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 145 bits (365), Expect = 2e-36
Identities = 86/549 (15%), Positives = 148/549 (26%), Gaps = 97/549 (17%)
Query: 12 PKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNG------------HPIDFENSKRLRL 57
P+ G++ + C P + W + G + + + R L
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 58 VDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS 112
+ + I + D GRY+C + S D L V P ++ K TV
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVD 125
Query: 113 ASSIIVFECSV---------------GGDAVLTVHWKRLGSAMPEDRMSVLPSRS----- 152
+ C G VL + + R+ + +
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185
Query: 153 -LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS---------DLRLEV 202
+ ++ +RL DAG+Y+C+A + +A L V L EV
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
A FLC G R+ + G R+ + DG + I + + A
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RI--LLNPQDKDGSFSVVITGLRKEDA 302
Query: 263 PLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--E 320
LC + N I P S + C
Sbjct: 303 G-RYLCGAHSDGQLQEGSPIQA-WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360
Query: 321 GSVQWW-----------------RGEREVGSGPRVNVTGDGS-----LVLTDVTKEDSGE 358
S+++W G + R+++ + ++L +T D+G
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK-PTLVNQTANGLTLA 417
Y C+ + E N + G K P +
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPN----LKVPGNVTAVLGETLKVPCHFPCKFSSYEKY 476
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT------------WVRVATNVPSP 465
W + N G L Q E S+ + + + T W V
Sbjct: 477 WCKWNNTG-CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYG 535
Query: 466 ILTVTNLTV 474
+ V
Sbjct: 536 ETAAVYVAV 544
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-34
Identities = 75/454 (16%), Positives = 130/454 (28%), Gaps = 59/454 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECG-PPRGHPEPTLVWKKNGHPI------------DFENSKR 54
K V G T + C + ++K+ G ++ R
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Query: 55 LRLVDGTN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT 110
L + + I R +D G+Y C + + + + + + +P ++ +
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGS 234
Query: 111 VS--------ASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSR-----SLQL 155
V+ +++ F C V LG P E R+ + P S+ +
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVI 294
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLT----VQMAPIVRERPSDLRLEVGRDAVFLCG 211
+ +R EDAG Y+C A + S V + P+ ++ G LC
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCP 354
Query: 212 IEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
S +W L VD+ L ++ +I+ L
Sbjct: 355 YNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLT 414
Query: 271 VNAAGS-----DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--- 322
AG + T L P N T L ++ C + S
Sbjct: 415 SRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYE 474
Query: 323 VQWWRGER---------EVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPH-G 368
W + + G + SL L VT+ D G Y C VK H
Sbjct: 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534
Query: 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+ + + E + P
Sbjct: 535 GETAAVYVAVEERKAAGSRDVSLAKADAAPDEKV 568
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 107 bits (266), Expect = 5e-24
Identities = 52/342 (15%), Positives = 104/342 (30%), Gaps = 57/342 (16%)
Query: 103 IRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRLG---------------SAMPEDR 144
I GP++ + + C + +W R G S+ R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 145 MSVLPSR-----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLR 199
++ + ++ + +D+G Y C +S +L V P +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LKIQNVS 258
+++GR C + + + +YP +D+ + + L IQ
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIG--LYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181
Query: 259 RTAAPLII-----------LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ ++I LC + + S P P +++ ++
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNS----NKKNADLQVLKPEPELVYEDLRGSVTF 237
Query: 308 R--------SEARLRCQVRGEG--SVQWWR-GEREVGSGPRVNVTGDG-----SLVLTDV 351
+ A+ C+ V G+R R+ + S+V+T +
Sbjct: 238 HCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGL 297
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
KED+G Y C S S ++ N R+P
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 58.9 bits (141), Expect = 5e-09
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPP---RGHPEPTLVWKKNGHPI----DFENSKRLRLVDG 60
P + G+T + C P + + W G D SK D
Sbjct: 445 NLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE 504
Query: 61 TN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
+ L + + D+G Y C VK E+ + V + G +D +++ +
Sbjct: 505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADA 562
Query: 117 IVFECSV 123
E +
Sbjct: 563 APDEKVL 569
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-36
Identities = 39/205 (19%), Positives = 60/205 (29%), Gaps = 24/205 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFEN--------SKRLRLV 58
+V ++ L C G P + WK G
Sbjct: 4 VYTAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
+ + + D+G Y C+V G ++ L VLV P ++V+ +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 118 VFECSVG-GDAVLTVHWKRLGSAMPED------------RMSVLPSRSLQLSDVRLEDAG 164
V CS G W + G +M S L V D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 165 EYVCEAENAVGKISASATLTVQMAP 189
EY C+A+N G S +
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHMDAVE 207
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-33
Identities = 41/213 (19%), Positives = 67/213 (31%), Gaps = 24/213 (11%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM------------PEDRMS 146
K + D V + I C+ G + V WK + + P
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT--LTVQMAPIVRERPSDLRLEVGR 204
S + S V +D GEY C G+ + LTV + P + +G
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 205 DAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL----LKIQNVSR 259
AV C +GSPP W +G + D +S ++ L V+
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGIS--MLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 260 T-AAPLIILCLGVNAAGSDLARASLTVSGPDPN 291
+ C N G+ + + + + N
Sbjct: 179 FDSGEYY--CQAQNGYGTAMRSEAAHMDAVELN 209
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 4e-26
Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 23/216 (10%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR--SLIYPGDRVDNIQAEITS 246
V SD+++ C G P W +L+ ++ A+ +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
+ + +V+R C+ G + S+ ++ PP ++
Sbjct: 62 FSSSGITFSSVTRKDNG-EYTCMVSEEGGQNYGEVSIHLTV---LVPPSKPTISVPSSVT 117
Query: 307 LRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVNVT-----------GDGSLVLTDV 351
+ + A L C +GS W++ + + G L+ V
Sbjct: 118 IGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
T DSGEY C ++ +G+A S + ++ N+G
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE-LNVG 211
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 2e-20
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
V G+ A+L C G P W K+G + ++K+ R ++
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165
Query: 63 -----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105
L D G Y C +N GT + + + G
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS-EAAHMDAVELNVGG 212
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 5e-36
Identities = 43/397 (10%), Positives = 99/397 (24%), Gaps = 80/397 (20%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPI------------------DFENSKRLRLV 58
GDT L C WK + ++ + L
Sbjct: 6 GKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV 118
L I++ + D Y C V++ + V + DT + +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANS-------DTHLLQGQSLT 115
Query: 119 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
+ +V + ++ ++L +S + L+D+G + C K+
Sbjct: 116 LTLESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE 169
Query: 179 ASATLTVQMAP-----IVRERPSDLRL---------EVGRDAVFLCGIEGSPPPSTFWML 224
+ V + ++ + ++ E + ++
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITF 229
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL-IILCLGVNAAGSDLARASL 283
+ + + + ++ L + A + G +L
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVN 339
V L C+V G S + +E R
Sbjct: 290 VVMRATQLQ------------------KNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-- 329
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
V ++G + C++ G +++
Sbjct: 330 ------EKAVWVLNPEAGMWQCLLSDS-GQVLLESNI 359
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 2e-22
Identities = 34/265 (12%), Positives = 63/265 (23%), Gaps = 52/265 (19%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
+ G + L P P++ + + G L++
Sbjct: 103 NSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQ 152
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
D G + C V E + VL I+ + V S + F +
Sbjct: 153 DSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211
Query: 129 LTVHWKRLGSAMPED--------------------RMSVLPSRSLQLS----DVRLEDAG 164
+ W+ ++ + ++ + L L+ + +G
Sbjct: 212 -ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
E GK+ L V A C + G P L
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSL 317
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGM 249
+ R + GM
Sbjct: 318 KLENKEAKVSKREKAVWVLNPEAGM 342
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 5e-15
Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 37/261 (14%)
Query: 201 EVGRDAVFLCGIEGSPPPSTFWM-------LEGNRSLIYPGDRVDNIQAEIT----SDGM 249
+ G C W L S + G N +A+ G
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 250 NLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L I+N+ + I C + L V G N +L G
Sbjct: 67 FPLIIKNLKIEDSDTYI--CEVEDQKEE----VQLLVFGLTANSDTHLLQG--------- 111
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSP 366
L + SVQ + N+ G +L ++ + +DSG +TC V
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGK-------NIQGGKTLSVSQLELQDSGTWTCTVLQN 164
Query: 367 HGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGS 426
+ + + + E V + L W S
Sbjct: 165 QKKVEFKIDIVVLAFQKASS-IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223
Query: 427 SSLLGYQVEMYSRPLPSSSPS 447
S + + ++ + +
Sbjct: 224 KSWITFDLKNKEVSVKRVTQD 244
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-35
Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 32/231 (13%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV 332
+ A +S V P + GP ++ + C+V ++ W+R + +
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 333 GSGPRVNVT-----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
S N+ L +T ++ D G Y C + G S L
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT------ 113
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
P P+ V ++ + + G +L Y+ E +
Sbjct: 114 ----------PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRA-------VG 155
Query: 448 GDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ + W I+T+ L TY + ALN GL S S+
Sbjct: 156 EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 4e-21
Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 15/191 (7%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDS 68
P + G+ + C +P T+ W ++G + N +++ + L +
Sbjct: 25 PVAVYTWEGNQVNITC-EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV--GGD 126
+ D G Y C N G +L P + S+++ + F+ GG
Sbjct: 84 SENDFGNYNCTAVNRIGQESLE-FILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGV 142
Query: 127 AVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDV--RLEDAGEY---VCEAENAVGKISA 179
+L W+ +G + + S++ L+ Y + A N G
Sbjct: 143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA-ALNGKGLGEI 201
Query: 180 SATLTVQMAPI 190
SA + P+
Sbjct: 202 SAASEFKTQPV 212
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-18
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW 133
Y + + P ++GP + + C V T+ W
Sbjct: 1 ATYAAASSALVPRGS-------HMYAP-KLQGPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 134 KRLGSAMPED-----RMSVLPSRS-LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
R G +P ++ PS S L+++ D G Y C A N +G+ S L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 188 APIVRERPSDLRLEVGRDAVFL 209
P PS ++E +
Sbjct: 113 TP---SSPSIDQVEPYSSTAQV 131
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 3e-11
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
Y + V + + AP ++ P + G C + P + W
Sbjct: 1 ATYAAASSALVPR------GSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+G L+ + NI+ + + L++ S C VN G +
Sbjct: 54 RDGQ--LLPSSNYS-NIKIY-NTPSASYLEVTPDSENDFGNYN-------CTAVNRIGQE 102
Query: 278 LARASLTVSGPDPNPPPV 295
L + P+ P +
Sbjct: 103 SLEFILVQADT-PSSPSI 119
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI----IVGGGNNSALINMTVS 695
+ Q+ +++ +++ P T I Y+ + +S + +
Sbjct: 115 SSPSIDQVEP----YSSTAQVQFDEPEA-TGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + + L Y+V LAA N G G S
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-35
Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 32/208 (15%)
Query: 10 VQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDF----------------- 49
+ A G+TA L C P + W +
Sbjct: 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64
Query: 50 --ENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+ R+ ++ + + + +D G YQC VK G +L VLVKP
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPS 123
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDV 158
R D + + +C G L W++L + MP ++ + S + + +
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ 186
E +G Y C +N VG L V
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 94.0 bits (233), Expect = 8e-22
Identities = 40/220 (18%), Positives = 66/220 (30%), Gaps = 42/220 (19%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLGSAMP---------------- 141
I + + C L + W S
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 142 ------EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ R+ + S+ +++++L D G Y C+ + A G + LTV + P
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
Query: 190 IVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
D E+G D C EGS P W + S P + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD-SQTMPTPWLAEMTS------ 175
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
++ ++N S + C N GSD L V P
Sbjct: 176 -PVISVKNASSEYSGTYS-CTVQNRVGSDQCMLRLDVVPP 213
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 6e-20
Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 32/218 (14%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLEGNRS-------LIYPGDRVDN 239
+ + G A C SP P W++ + + ++Y GD++ +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLII-----------LCLGVNAAGSDLARASLTVSGP 288
++ +V A + + C A G + LTV
Sbjct: 63 NYYPDLKGRVHFTS-NDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWR-GEREVGSGPRVNVTGDG 344
P + + + ++ +L+C+ + +W + + + P +
Sbjct: 122 -----PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ + + + E SG Y+C V++ GS L P+
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 8e-14
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
G+ L+C P G W+K + +++++
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV-ISVKN 182
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ G Y C V+N G+ + +LR+ V P
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQ---CMLRLDVVP 212
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-35
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDD 73
+ + L + + W NG I S R++ + L I + D
Sbjct: 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 74 GRYQCVVKNVAGTREST--------------------DAVLRVLVKPYIIRGPKDTTVSA 113
G+Y + + + T A+ + P T+
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR----SLQLSDVRLEDAGEYVC 168
+ C+V GD V W + A+ + D ++ ++ V D+G+Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 169 EAENAVGKISASATLTVQ 186
+N G ++ T++V
Sbjct: 192 VVKNKYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-26
Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 44/220 (20%)
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAM-PEDRMSVLPS---RSLQLS 156
+ S + I V L V+W GSA+ DR+ + LQ++
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 64
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ---------------------MAPIVRERP 195
+ D G+YV E + + L+ Q A ++ P
Sbjct: 65 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 124
Query: 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
+ ++ G+ C + G PPP W+ + D + + I
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNE--KALAQTDH---CNLKFEAGRTAYFTIN 179
Query: 256 NVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPD 289
VS + N GS+ + +++V P+
Sbjct: 180 GVSTADSGKYG-------LVVKNKYGSETSDFTVSVFIPE 212
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 36/214 (16%), Positives = 61/214 (28%), Gaps = 45/214 (21%)
Query: 195 PSDLRLE-VGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNL 251
+DL+++ + W G S I DRV + G
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG--SAIRYSDRV-----KTGVTGEQIW 60
Query: 252 LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPD---------------- 289
L+I + + L+ D
Sbjct: 61 LQINEPTPNDKGKYV-------MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 113
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVT----GD 343
N V+ P T+ L C V G+ V W + E+ + N+
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ V+ DSG+Y VVK+ +GS + ++
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-17
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
P + G L C G P P + W KN + + L+ G I
Sbjct: 120 LGGLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D G+Y VVKN G+ E++D + V +
Sbjct: 179 NGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 211
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 1e-12
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 311 ARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVK 364
+L V V W + RV G L + + T D G+Y +
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
+ L ++ F R + +
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 116
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 33/295 (11%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156
P I + V A + C V W + M
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY---FNEMVENKKNEWIQE 62
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
G Y C N + +S + V+ + L + DA+ C +
Sbjct: 63 KAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276
+ +SL + + I+NV R L + C
Sbjct: 120 VSQYSLIECDGKSL--------PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171
Query: 277 DL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREV 332
+ +L V PV+ + L + C ++ + W + +
Sbjct: 172 LHSDKFTLKVR-EAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQP 230
Query: 333 GSGPRVNVTGD----------GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+V +L ++ +DSG + C + GSA+ + +L+
Sbjct: 231 QHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 5e-31
Identities = 46/288 (15%), Positives = 80/288 (27%), Gaps = 26/288 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V AGDT L C + W + + +K +
Sbjct: 15 IHPAQSELIVEAGDTLSLTC-----IDPDFVRWTFKTYFNEMVENK------KNEWIQEK 63
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ T G Y C N + + V + S + C +
Sbjct: 64 AEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 128 VLTVHWKRL-GSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVG-KISASATL 183
V G ++P D P + + +V R C A+ S TL
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179
Query: 184 TVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVD 238
V+ A P+V + L+ G +C I+ W+ + + +
Sbjct: 180 KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 239 NIQAEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + L I + + + + C N GS +L V
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFM-CYANNTFGSANVTTTLKV 286
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 19/198 (9%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLA 64
+ + AL+ C P + +G + + +
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSLIECDGKSLP-TDLTFVPNPKAGITI 149
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFE 120
R +C + S L+V P + +
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209
Query: 121 CSV-GGDAVLTVHWKRLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDAGEYVC 168
C++ + W ++ + +L +S R++D+G ++C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269
Query: 169 EAENAVGKISASATLTVQ 186
A N G + + TL V
Sbjct: 270 YANNTFGSANVTTTLKVV 287
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGD 343
+ S +P PP I + + L C V+W +
Sbjct: 4 SASPGEP-SPPSIHPAQSELIVEAGDTLSLTC--IDPDFVRWTFK----TYFNEMVENKK 56
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ +G YTC + S S + P +
Sbjct: 57 NEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFL 96
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 2e-34
Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 23/202 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LA 64
F + + + + + N I ++ + T +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST-----DAVLRVLVKPYIIRG------------PK 107
++ + D+G Y +++ T ST D ++ + R
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS--RSLQLSDVRLEDAG 164
V+ ++ +C V + W + + D +L +++ +DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 165 EYVCEAENAVGKISASATLTVQ 186
Y ++ GK + L +
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDE 206
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 3e-23
Identities = 27/206 (13%), Positives = 64/206 (31%), Gaps = 31/206 (15%)
Query: 193 ERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD---G 248
+ + + F E S ++ I+ G + ++ D G
Sbjct: 7 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKY-----KMHIDRNTG 59
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSD--------------LARASLTVSGPDPNPPP 294
+ + ++ + + ++ A P
Sbjct: 60 IIEMFMEKLQDEDEG-TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 295 VILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNV-TGDGSLVLTD 350
+ + + L+C+V E + W++ ERE+ + + G +L++T+
Sbjct: 119 HFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITE 177
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASL 376
+K+D+G Y ++K G L
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 7e-19
Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 47/217 (21%)
Query: 103 IRGPKDTTVSASSIIVFE-CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSR---SLQL 155
+ + + F + V++ + E +M + + + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEV------------- 202
++ ED G Y + ++ ++ L + +++ R E
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125
Query: 203 -----GRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256
+ + C + + W + I ++ D DG+ L I
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHDF------KDGICTLLITE 177
Query: 257 VSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
S+ + + G D +R L
Sbjct: 178 FSKKDAGIYE-------VILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 7e-11
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 300 PANQTLPLRSEARLRCQV---RGEGSVQWWRGEREVGSGPRVNVTGDG-----SLVLTDV 351
+ + + R Q G V + E+E+ GP+ + D + + +
Sbjct: 9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
ED G YT ++ + + L +
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 101
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-34
Identities = 46/287 (16%), Positives = 79/287 (27%), Gaps = 35/287 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+QP V +T L C + W NG + I
Sbjct: 4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------SYRITS 54
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGD 126
+ D G Y+C + S L + +++ + + C
Sbjct: 55 ASVNDSGEYRCQRGL---SGRSDPIQLEIHRGWLLLQ-VSSRVFTEGEPLALRCHAWKDK 110
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
V V + R G A + +L + + G Y C SA ++TV+
Sbjct: 111 LVYNVLYYRNGKAFKFFH----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 187 ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
AP++ + L G C + +Y + +
Sbjct: 167 ELFPAPVLNASVTS-PLLEGNLVTLSCETKLLLQRPGLQ--------LYFSFYMGSKTLR 217
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR---ASLTVSG 287
+ + +I R + L C G+ L R L V G
Sbjct: 218 GRNTS-SEYQILTARREDSGLYW-CEAATEDGNVLKRSPELELQVLG 262
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 45/283 (15%), Positives = 79/283 (27%), Gaps = 30/283 (10%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K I P +V + C V + W G+A + S +++
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITS 54
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
+ D+GEY C+ S L + ++ + S + E G C
Sbjct: 55 ASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSRVFTE-GEPLALRCHAWKDKL 111
Query: 218 PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277
++ + + L I + + C G+
Sbjct: 112 VYNVLYYRNGKAFKFFHWN-------------SNLTILKTNISHNGTYH-CSGMGKHRYT 157
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSG 335
A S+TV P +L L + L C+ + + +GS
Sbjct: 158 SAGISVTVKEL---FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214
Query: 336 PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377
+ +EDSG Y C + G+ S L
Sbjct: 215 TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELE 257
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 8e-31
Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 20/195 (10%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ + R +Q S+ G+ L C + +++ +NG F +
Sbjct: 78 LEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------N 130
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSIIVF 119
+NL I + + +G Y C + +V ++ L ++ + + +++
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTL 190
Query: 120 ECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
C L + + S Q+ R ED+G Y CEA
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRN----TSSEYQILTARREDSGLYWCEAATED 246
Query: 175 GKI---SASATLTVQ 186
G + S L V
Sbjct: 247 GNVLKRSPELELQVL 261
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 44/227 (19%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
++ +P + + C + P S+ W L G Q S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTA-----------TQTSTPS- 49
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+I + S + C + SD L + ++L ++
Sbjct: 50 ----YRITSASVNDSGEYR-CQRGLSGRSD--PIQLEIH-----RGWLLLQVS-SRVFTE 96
Query: 308 RSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC + +V ++R + + +L + +G Y C
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTILKTNISHNGTYHCSGM 151
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
H S S+ + F AP + T P L
Sbjct: 152 GKHRYTSAGISVTVKEL-------FPAPVLNA---SVTSPLLEGNLV 188
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 5e-34
Identities = 105/672 (15%), Positives = 186/672 (27%), Gaps = 129/672 (19%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-------VHWKRLGSAMPEDRMSVLP 149
L+ P P+ V S C + + + WK +P+++ +++
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 150 SRSLQLSDVRL-EDAGEYVC--EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDA 206
+ ++ + + C + + T+ + P E+P +L V
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGK 117
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
C E T LE N +L + D + + + +
Sbjct: 118 KMRC--EWDGGRET--HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV 173
Query: 267 LCLGVNAAG---SDLARASLTVSGPDPNPPPVILFGPANQTL----------PLRSEARL 313
NA G SD PNPP + + + ++S L
Sbjct: 174 WVEAENALGKVTSDHINFDPVYKVK-PNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232
Query: 314 RCQV--RGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT----CVVKSPH 367
+ + R + + W + E + R + T + D+ EY C+ +
Sbjct: 233 KYNIQYRTKDASTWSQIPPEDTASTRSSFT------VQDLKP--FTEYVFRIRCMKEDGK 284
Query: 368 GSAS-WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW---SRNNQ 423
G S WS + + P Q + L W
Sbjct: 285 GYWSDWSEEASGITYED-------RPS-KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEA 336
Query: 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT---YTF 480
G +L Y+V T R +++ + + T LTV LT Y
Sbjct: 337 NGK--ILDYEV-------------------TLTRWKSHLQNYTVNATKLTVNLTNDRYLA 375
Query: 481 LVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQ 540
+ N G S + L+ I + +F L
Sbjct: 376 TLTVRNLVGKSDAAVLT--------------------IPACDFQATHPVMDL-------- 407
Query: 541 EGGGSLIELTEVKPMTSTSVKLTWEILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAG 597
+ + W YI + S
Sbjct: 408 -----------KAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW---QQEDGT 453
Query: 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATS 657
+L LA Y + P + G P +++ + PS P + +
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPTVRTKKV-GKNE 511
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717
+L+W PV NG IR Y I + V +S L++L++ Y V +A
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFY-RTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 570
Query: 718 ATNRAGTGPYSR 729
A G
Sbjct: 571 AYTDEGGKDGPE 582
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 71/476 (14%), Positives = 131/476 (27%), Gaps = 87/476 (18%)
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGEGS---------VQWWRGEREVGSGPRVNVT 341
+P I P + + L S C ++ + + W + +
Sbjct: 3 DPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
S V + + TC + + + + P P P
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITI-----------ISGLP---PEKP 106
Query: 402 TKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN 461
+ + + W + + + ++ T + +
Sbjct: 107 KNLSCIVNEGKKMRCEWDGGRETHLET--NFTLKS----------EWATHKFADCKAKRD 154
Query: 462 VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSE 521
P+ + + V A N+ G ++ + V +
Sbjct: 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---------------- 198
Query: 522 NFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE--ILNTDYIEGVYIYS 579
P+ S+ S+ +KLTW + + I I
Sbjct: 199 --PNPPHNLSV------------------INSEELSSILKLTWTNPSIKSVIILKYNIQY 238
Query: 580 RGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL--VPFFG-SVDGKPSNLRAVRT 636
R D + A S F V L ++ Y F + + G S + T
Sbjct: 239 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 637 LECEPSG----VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
E PS ++ +V L WK P NG I Y++ + S L N
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRW-KSHLQNY 357
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWAS 748
TV+A+ T+ LTN RY +L N G + + + + D +
Sbjct: 358 TVNATKLTVNLTN----DRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKA 409
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 6e-19
Identities = 90/659 (13%), Positives = 173/659 (26%), Gaps = 138/659 (20%)
Query: 3 LLREEFRVQPKSQRVAAGDTALLEC------GPPRGHPEPTLVWKKNGHPIDFENSKRLR 56
LL + P+S V C +VWK N I E +
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 57 LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD-AVLRVLVKPYIIRGPKDTTVSASS 115
+++ D + + C + ++ + + P PK+ + +
Sbjct: 61 R-TASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNE 115
Query: 116 IIVFECS--VGGDAVL----TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV-- 167
C G + L T+ + + + S + D
Sbjct: 116 GKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV-DYSTVYFVNIEVW 174
Query: 168 CEAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
EAENA+GK++ S + V+ P +L + + + + + P ++
Sbjct: 175 VEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII-- 231
Query: 227 NRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLG-----------VNAA 274
L Y NIQ + + ++ + T + + L +
Sbjct: 232 ---LKY------NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKED 282
Query: 275 G-------SDLARASLTVSGPDPNPPPVILFGPA----NQTLPLRSEARLRCQVRGEG-- 321
G S+ A P P P+ +T+ L + + G+
Sbjct: 283 GKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILD 342
Query: 322 -SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V R + + + VN T LT D T V++ G + +
Sbjct: 343 YEVTLTRWKSHLQNYT-VNAT-----KLTVNLTNDRYLATLTVRNLVGKSDAA------- 389
Query: 381 PTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRP 440
+ P N L + W+ + +L + V P
Sbjct: 390 ----VLTIPACDFQ---ATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAP 442
Query: 441 LPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
T + NL Y V + + G +P +
Sbjct: 443 -----------CITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK--- 488
Query: 501 VLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSV 560
+ P +G ++R K +
Sbjct: 489 ----------------AYLKQAPP--SKGPTVR------------------TKKVGKNEA 512
Query: 561 KLTWEILNTDY----IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
L W+ L D I I+ R + + V + + ++ L + Y
Sbjct: 513 VLEWDQLPVDVQNGFIRNYTIFYRTIIGNET----AVNVDSSHTEYTLSSLTSDTLYMV 567
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 13/101 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN-NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P N L W + + + + Y + T
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYR------------TIIGNET 543
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V + T+++LT Y + A G +
Sbjct: 544 AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 7e-34
Identities = 47/322 (14%), Positives = 86/322 (26%), Gaps = 53/322 (16%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKN---------------GHPIDFENS 52
S G +L C P + W+K+ G +
Sbjct: 20 VNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYR 79
Query: 53 KRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKD 108
+R+ + + + + D+G Y C + L V+ KP
Sbjct: 80 ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139
Query: 109 TTVSA-----SSIIVFECSV-GGDAVLTVHWKRLGSAMPE------DRMSVLPSRSLQLS 156
+ A ++V C+ G V W+ E +V +L
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGS 215
R C + + S TL VQ P V E D C + +
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADAN 259
Query: 216 PPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274
PP + + W ++ + + L ++ + A I C N
Sbjct: 260 PPATEYHWTTLN-----------GSLPKGVEAQNRTLFFKGPINYSLAGTYI-CEATNPI 307
Query: 275 GSDLARASLTVSGPDPNPPPVI 296
G+ + + + +
Sbjct: 308 GTRSGQVEVNI-----TEAAAL 324
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 50/313 (15%), Positives = 86/313 (27%), Gaps = 47/313 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV----GGDAVLTVHWKRLGSAMPE------------- 142
+++ + +V CS + V W++ + +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 143 -----DRMSVLPSR----SLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTVQMAPIVR 192
+R+ L +++LS + LED G Y+CE G + LTV P
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 193 ERPSDLRLEV-----GRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ L + V C G PP W Y R N + S
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
++ + C+ +L V P V + G
Sbjct: 195 ----RYRLVPSREAHQ-QSLACIVNYHMDRFKESLTLNVQYE----PEVTIEGFDGNWYL 245
Query: 307 LRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVV 363
R + +L C+ W + G V + +G Y C
Sbjct: 246 QRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 364 KSPHGSASWSASL 376
+P G+ S +
Sbjct: 304 TNPIGTRSGQVEV 316
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 7/193 (3%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVDGTNLAIQ 66
++++ + C G P + W+ + + + +
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSVGG 125
SR+ C+V + + L V +P + I G + C
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKES-LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADA 258
Query: 126 D-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184
+ HW L ++P+ + + AG Y+CEA N +G S +
Sbjct: 259 NPPATEYHWTTLNGSLPK-GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Query: 185 VQMAPIVRERPSD 197
+ A +
Sbjct: 318 ITEAAALEHHHHH 330
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-08
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 31/174 (17%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGS 334
AS+T P ++ + + ++ L C V W +
Sbjct: 2 ASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ 61
Query: 335 -----------------GPRVNVTG----DGSLVLTDVTKEDSGEYTCVVKS-PHGSASW 372
RV DG++ L+ + ED G Y C + P G+
Sbjct: 62 NVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRES 121
Query: 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ 423
+L + I +A + +ANG ++W +
Sbjct: 122 QLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK 175
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 2e-33
Identities = 37/194 (19%), Positives = 52/194 (26%), Gaps = 17/194 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+VQ + V GD LL C G W K L
Sbjct: 160 TLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+ + C +N G E + V V + T SV G
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVS-----VQVNVSFPASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 127 AVLTVHWKRLGSAMPED-----------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
++ W GS + E + L+L+ + G Y A N G
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 176 KISASATLTVQMAP 189
+ SAS P
Sbjct: 334 QASASIMAAFMDNP 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 94.4 bits (234), Expect = 6e-21
Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 29/205 (14%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P ++ + + ++VG D + C +EG W+L +++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ------SATVMKSGGLPSL 212
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L + NV+ + C N G + VS P T
Sbjct: 213 G--LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ---------LHTAVEM 261
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVN----------VTGDGSLVLTDVTKEDS 356
+ V G S++W + + G L L T ++
Sbjct: 262 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 321
Query: 357 GEYTCVVKSPHGSASWSASLRFESP 381
G YT + +P G AS S F
Sbjct: 322 GNYTLLAANPFGQASASIMAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 92.5 bits (229), Expect = 3e-20
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 9/193 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR--LGSAMPEDRMSVLPSRSLQLSD 157
P + + +V ++ C V G + W L + + LPS L L++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 158 V-RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
V + C AEN VG+ S + V V+ ++G P
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ----LHTAVEMHHWCIPFSVDGQP 274
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAAG 275
PS W+ G+ + ++ + L++ + L N G
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT-LLAANPFG 333
Query: 276 SDLARASLTVSGP 288
A
Sbjct: 334 QASASIMAAFMDN 346
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 3e-10
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 17/155 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREV-GSGPRVNVTGDGSLVL 348
P + N ++ + + LRCQV G G W E E + + L L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 349 TDVTKE-DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA-------------PEP 394
+VT + + TC ++ G A S + P + + P P
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP 276
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSL 429
S L + N + L
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 311
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-30
Identities = 42/242 (17%), Positives = 62/242 (25%), Gaps = 65/242 (26%)
Query: 9 RVQPKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNGHPI------------------- 47
R V AG T L C P + W K P
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 48 -----------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE----STDA 92
DF + + L + D GRY C V + E +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 93 VLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------ 142
VL+V + + V + I C A V W +
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185
Query: 143 -------------------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183
R S +R+L + ++ DAG CE G++ A +
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Query: 184 TV 185
T+
Sbjct: 246 TI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 90.7 bits (224), Expect = 2e-20
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 57/242 (23%)
Query: 191 VRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWM-----------LEGNRSLIYPGDR 236
VR +++ + G C + PP W+ +GN + G
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL----------------GVNAAGSDLAR 280
+ S G L + + A L + + G D
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP-- 336
L V+G P V + + ++ + C +V W+ G +
Sbjct: 125 VVLKVTGHTP-SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 337 ----------------------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
R + +G +LV+ D+G C + + G
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Query: 375 SL 376
S
Sbjct: 244 SS 245
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 80.0 bits (196), Expect = 9e-17
Identities = 34/240 (14%), Positives = 59/240 (24%), Gaps = 61/240 (25%)
Query: 106 PKDTTVSASSIIVFECSV---GGDAVLTVHWKRLGSAMPED------------------- 143
+ V A + CS + W + S
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 144 --------------RMSVLPSRSLQLSDVRLEDAGEYVCEAEN-----AVGKISASATLT 184
++ L + +L+L+ V +D G Y C+ G + S L
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 185 VQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM---------------LE 225
V + ++++ G D C + W
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
N++ I + G L I+ T A + C G A S T+
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW-CELATGQGELDADRSSTI 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 2e-11
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 24/113 (21%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---------------- 51
+ +V G+ + C P + W +
Sbjct: 139 HVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGIT 197
Query: 52 ------SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ R NL I+ ++ TD GR C + G D +L
Sbjct: 198 WFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDADRSSTILK 249
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 9e-30
Identities = 46/314 (14%), Positives = 90/314 (28%), Gaps = 52/314 (16%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+Q + AGD L P P T W K+ P + + L
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------TLT 55
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV--LVKPYIIRGPKDTTVSASSIIVFECS 122
+ D+ + G Y+ V++ V + I P+ VS+ + + +
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 123 VGG--------DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
V + L W + + ++ + + + + G Y +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDT-------TQDITIQEFTADKNGVYTVKVWGES 168
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEV--GRDAVFLCGIE--------GSPPPST---- 220
+ASA+ + +A + ++ V G + + G P +
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNW 228
Query: 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA---------PLIILCLGV 271
+ EG S G V + L ++ + I V
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288
Query: 272 NAAGSDLARASLTV 285
A S + S+ V
Sbjct: 289 EVAASTSRKCSMEV 302
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 99.5 bits (247), Expect = 7e-23
Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 55/312 (17%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRMSVLPSRSL 153
+ + A +V GD LT W + + + +L
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATL 54
Query: 154 QLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMA--PIVRERPSDLRLEVGRDAVFLC 210
++D E+AG Y ++ S ++ A + P + D
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 211 GIE---GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
++ G P + L Y + +++ + IQ + +
Sbjct: 115 TVKFSGGKTPADNYE-------LHYSWSKGEDVIDTTQD-----ITIQEFTADKN-GVYT 161
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV---------- 317
+ A AS + N ++T+ L +E L V
Sbjct: 162 VKVWGESEDSAASASTKIMLATMNVDQD---VVESKTVALGNEISLNYVVSEDIVGDSSG 218
Query: 318 RGEGSVQW-WRGEREVGSGP------------RVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
++++ W +RE P ++T DG L T +D+ ++ CV K
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278
Query: 365 SPHGSASWSASL 376
+ +
Sbjct: 279 LYQQIEDETVEV 290
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 6e-13
Identities = 30/256 (11%), Positives = 67/256 (26%), Gaps = 54/256 (21%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF----WMLEGNRSLIYPGDRVDNIQA 242
MA V + + G + G P + W +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ--------------- 45
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPAN 302
++ L + + + A + + + + + V + P +
Sbjct: 46 PHENNTATLT-VADATSENA-GSYKVTVQDTDTMTSVESEVFLM--EEAELIVNITEPQH 101
Query: 303 QTLPLRSEARLRCQVRGEG----------SVQWWRGEREVGSGPRVNVTGDGSLVLTDVT 352
+ +++ L V+ G W +GE + + + + T
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFT 153
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
+ +G YT V ++ SAS + T + N
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLATMN-------------VDQDVVESKTVALGN 200
Query: 413 GLTLAWSRNNQIGSSS 428
++L + + I S
Sbjct: 201 EISLNYVVSEDIVGDS 216
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 34/186 (18%)
Query: 19 AGDTALLECGPPRGHPEPTLVWKKNGHPI------------------DFENSKRLRLVDG 60
GDT L C WK + ++ + L
Sbjct: 9 KGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I++ + D Y C V++ E V + DT + +
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKE--EVQLLVFGLTANS-------DTHLLQGQSLTLT 118
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
+ +V + ++ ++L +S + L+D+G + C K+
Sbjct: 119 LESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 181 ATLTVQ 186
+ V
Sbjct: 173 IDIVVL 178
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 5e-17
Identities = 32/189 (16%), Positives = 51/189 (26%), Gaps = 36/189 (19%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWM-------LEGNRSLIYPGDRVDNIQAEI----TSDGMN 250
G C W L S + G N +A+ G
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 251 LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
L I+N+ + I C + L V G N +L G
Sbjct: 69 PLIIKNLKIEDSDTYI--CEVEDQKEE----VQLLVFGLTANSDTHLLQG---------Q 113
Query: 310 EARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPH 367
L + SVQ + + G +L ++ + +DSG +TC V
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Query: 368 GSASWSASL 376
+ +
Sbjct: 167 KKVEFKIDI 175
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 7e-17
Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 46/192 (23%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR---------------------SLQL 155
+ C+ + HWK ++ L +
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
++++ED+ Y+CE E+ VQ+ SD L G+
Sbjct: 73 KNLKIEDSDTYICEVEDQKE--------EVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 124
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
PS +++ G + L + + + C +
Sbjct: 125 SSPSVQCRSPRGKNI--QGGKT--------------LSVSQLELQDS-GTWTCTVLQNQK 167
Query: 276 SDLARASLTVSG 287
+ + V
Sbjct: 168 KVEFKIDIVVLA 179
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 6e-10
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 12/100 (12%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ LL + G + L P P++ + + G
Sbjct: 94 VQLLVFGLTANS-DTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKN---------IQGG 142
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L++ D G + C V E + VL
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQ 181
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 38/283 (13%), Positives = 75/283 (26%), Gaps = 37/283 (13%)
Query: 14 SQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
+ + + C P E + ++ + +
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
R C V ++E+ + + P VS + + +C A +T+
Sbjct: 72 GTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL 130
Query: 132 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI----SASATLTVQM 187
+ + P L L ++ + C A V + + L V
Sbjct: 131 NGVPAQ--------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 182
Query: 188 APIVRER--PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
P + ER P + +C G+P P + +G L
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------------- 227
Query: 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + V+R LC + G ++ V P
Sbjct: 228 ----PIGESVTVTRDLEG-TYLCRARSTQGEVTREVTVNVLSP 265
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 46/296 (15%), Positives = 76/296 (25%), Gaps = 51/296 (17%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGD---AVLTVHW----KRLGSAMPEDRMSVLPSRS 152
P ++ + + CS+ G + VH +RL + S S
Sbjct: 7 PQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
+ ++ E C T+T+ P + + G + C
Sbjct: 64 VSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC-- 120
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
E P L G G + + C
Sbjct: 121 EAHPRAK--VTLNGVP---------------AQPLGPRAQLLLKATPEDNGRSFSCSATL 163
Query: 273 AAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWW 326
L + L V P P N T P S+ CQ G ++
Sbjct: 164 EVAGQLIHKNQTRELRVLYG---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL 220
Query: 327 R-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ G + G VT++ G Y C +S G + ++ SP
Sbjct: 221 KDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-25
Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V V+ G ++C HP NG P + L+ T
Sbjct: 100 APNVILTKPEVSEGTEVTVKC---EAHPRAK--VTLNGVPAQPLGPRAQLLLKAT----- 149
Query: 67 DSRKTDDGR-YQCVVKNVAG---TRESTDAVLRVLVKPYIIRG--PKDTTVSASSIIVFE 120
D+GR + C ++ LRVL P + P + T +S
Sbjct: 150 ---PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C G+ + + + G+ + V + G Y+C A + G+++
Sbjct: 207 CQAWGNPLPELKCLKDGTFPLP---------IGESVTVTRDLEGTYLCRARSTQGEVTRE 257
Query: 181 ATLTVQ 186
T+ V
Sbjct: 258 VTVNVL 263
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDG 344
P PP ++ L + ++ + C + G E V G++ + P V D
Sbjct: 3 PATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--PTVTYGNDS 57
Query: 345 ----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ V E + TC V + S ++ S PN+
Sbjct: 58 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 103
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-28
Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 23/183 (12%)
Query: 17 VAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR 75
G LL C E T W K G + + + G + G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA------LPGQKTEFKVDSDDQWGE 63
Query: 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWK 134
Y CV A +++ P + ++ + C V W
Sbjct: 64 YSCVFLPEPMGT----ANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119
Query: 135 RLGSAMPEDRMSVLPSR----------SLQLSDVRLE-DAGEYVCEAENAVGKISASATL 183
++ + + M+ SR L + ++ +E D G+Y C ++ G A TL
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Query: 184 TVQ 186
V+
Sbjct: 180 RVR 182
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 1e-26
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Query: 109 TTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
T S I+ CS+ A V W + G + ED LP + + + GEY
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEY 64
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLE 225
C +A + + P V+ S + G A+ +C E PP + + W
Sbjct: 65 SCVFLPEPM---GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + ++ +S G + L I+N++ A P C G ++ GSD A +L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-14
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 37/195 (18%)
Query: 201 EVGRDAVFLCGIEGSPPPST--FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258
++G + C + S T W+ G ++ + + + S
Sbjct: 11 DLGSKILLTCSLNDSATEVTGHRWLKGGVV-----------LKEDALPGQK--TEFKVDS 57
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ + A++ + PP + +++ + A L C+
Sbjct: 58 DDQWGEYS-CVFLPEPM---GTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSE 108
Query: 319 GE---GSVQWWRGEREV------GSGPRVNVTGDG---SLVLTDVT-KEDSGEYTCVVKS 365
W++ GS R V+ L + ++ + D G+Y C S
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS 168
Query: 366 PHGSASWSASLRFES 380
GS +LR S
Sbjct: 169 SKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGH----PIDFENSKRLRLVDGT 61
+ S+ + G+TA+L C P T W K + + R +
Sbjct: 85 RVKAVKSSEHINEGETAMLVC-KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 62 N---LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I++ + + D G+Y+C + G+ ++ LRV
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 181
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-28
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 19/182 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ P R+ G+ L C + W NG + NS +L I +++
Sbjct: 9 LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------SLNIVNAK 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + V S L V +++ V + C V
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDV 115
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM 187
V + + G A+ + ++ +++ +ED+G Y C + S +TV
Sbjct: 116 YKVIYYKDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171
Query: 188 AP 189
AP
Sbjct: 172 AP 173
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ + + +Q ++ V G L C R +++ K+G + +
Sbjct: 81 LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------N 133
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
N++I ++ D G Y C K ES + V+ P
Sbjct: 134 HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 25/195 (12%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQ 154
V KP + P + + C+ V + W GS E + SL
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLN 54
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
+ + + ED+GEY C+ + S L V ++ + +++ +E G+ C
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDWLLLQASAEVVME-GQPLFLRCHGWR 111
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274
+ + +L Y + + + I N + + C G
Sbjct: 112 NWDVYKVIYYKDGEALKYWYENHN-------------ISITNATVEDSGTYY-CTGKVWQ 157
Query: 275 GSDL-ARASLTVSGP 288
++TV
Sbjct: 158 LDYESEPLNITVIKA 172
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 30/196 (15%), Positives = 47/196 (23%), Gaps = 33/196 (16%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
V P V P R+ G + C S+
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
L I N + C S+ + ++ Q
Sbjct: 53 -------LNIVNAKFEDSG-EYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVM--EGQP 102
Query: 305 LPLRSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
L LRC V +++ + + ++ +T+ T EDSG Y C
Sbjct: 103 L------FLRCHGWRNWDVYKVIYYKDGEALKYWYE-----NHNISITNATVEDSGTYYC 151
Query: 362 VVKSPHGSASWSASLR 377
K S L
Sbjct: 152 TGKVWQLDYE-SEPLN 166
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P + P + L C S +W+ + SL +
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-------ETNSSLNI 55
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-- 406
+ EDSGEY C + + S + E ++ + +A G P L
Sbjct: 56 VNAKFEDSGEYKCQHQ----QVNESEPVYLEVFSDWLL--LQASAEVVMEGQPL--FLRC 107
Query: 407 -VNQTANGLTLAWSRNNQ 423
+ + + + ++ +
Sbjct: 108 HGWRNWDVYKVIYYKDGE 125
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 23/204 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-----------------DF 49
E ++ +VA + LL W K
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNL-PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQ 59
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV-LVKPYIIRGPKD 108
S R + +L Q D G Y + + R V +
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEY 166
TTV + C + W ++ +RM++ + L++ ++ EDAGEY
Sbjct: 120 TTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 167 VCEAENAVG-KISASATLTVQMAP 189
CE N V + S S L + P
Sbjct: 179 QCEISNPVSVRRSNSIKLDIIFDP 202
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-16
Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 18/206 (8%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI-----YPGDRVDNIQAEITSDGM 249
++ + + L + W ++ + + N + S
Sbjct: 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 250 NL-----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
+ L Q ++ + + R TV P N T
Sbjct: 66 IIYSNGSLLFQMITMKDM-GVYTLDMTDENYR---RTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 305 LPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGS-LVLTDVTKEDSGEYTCV 362
+ L C G ++QW + + R+ ++ + S L + + +ED+GEY C
Sbjct: 122 VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCE 181
Query: 363 VKSPHGSA-SWSASLR-FESPTNPNI 386
+ +P S S L P + +
Sbjct: 182 ISNPVSVRRSNSIKLDIIFDPHHHHH 207
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 3e-16
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQ 66
+Q + V D+ L C + W N + ++R+ L + + L I
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLS--NDIGANIQWLFNSQSLQL--TERMTLSQNNSILRID 168
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR 104
++ D G YQC + N R S L ++ P+
Sbjct: 169 PIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHH 206
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 25/137 (18%)
Query: 309 SEARLRCQVRGE--GSVQWWRGEREVGSG-------------------PRVNVTGDGSLV 347
+ L G+ W++G R + +GSL+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+T +D G YT + + + A++RF F + + TL
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTVKELDSV--TLT 131
Query: 408 NQTAN-GLTLAWSRNNQ 423
+ + G + W N+Q
Sbjct: 132 CLSNDIGANIQWLFNSQ 148
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 46/337 (13%), Positives = 86/337 (25%), Gaps = 63/337 (18%)
Query: 398 PGPPTKPTLVNQTANG----LTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
P+ ++ + + L W + +L Y+V +
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTR-------------- 50
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFS 512
W N +T Y + N G S + L+
Sbjct: 51 --WKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT--------------- 93
Query: 513 EGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYI 572
+ + P + + W
Sbjct: 94 -----------------------IPACDFQATHPVMDLKAFP-KDNMLWVEWTTPRESVK 129
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632
+ + + D + +L LA Y + P + G P +++
Sbjct: 130 KYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 189
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
+ PS P + + +L+W PV NG IR Y I + +
Sbjct: 190 -AYLKQAPPSKGPTVR-TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE-TAV 246
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR 729
V +S L++L++ Y V +AA G
Sbjct: 247 NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 283
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 638 ECEPSGVP----QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
E PS P ++ +V L WK P NG I Y++ + + L N T
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-LQNYT 59
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
V+A+ T+ LTN RY +L N G A+L++ +
Sbjct: 60 VNATKLTVNLTND----RYLATLTVRNLVGKSD---AAVLTIPACDFQ 100
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 34/247 (13%), Positives = 63/247 (25%), Gaps = 63/247 (25%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P N L + W+ + S+ Y +E + L +P W +
Sbjct: 101 ATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILE-W-CVLSDKAPC----ITDWQQ 150
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
V NL Y V + + G +P + + +
Sbjct: 151 EDGTVHR-TYLRGNLAESKCYLITVTPVYADGPGSPESIK------------AYLK---- 193
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV-- 575
+ P +G K + L W+ L D G
Sbjct: 194 ---QAPPSKGPT--------------------VRTKKVGKNEAVLEWDQLPVDVQNGFIR 230
Query: 576 --YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF--FGSVDGKPSNL 631
I+ R + + V + + ++ L + Y + + G DG
Sbjct: 231 NYTIFYRTIIGNET----AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT- 285
Query: 632 RAVRTLE 638
T +
Sbjct: 286 --FTTPK 290
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-27
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV-----YIYSRGLDPPASVAMLTVLHAGEASGFLVT 605
+ ++ ++++TW + + + Y + PA+ +LVT
Sbjct: 12 QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA--NATTLSYLVT 69
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTD--PVLLNATSVLLKWK 663
GL + YEF ++ G S T E P+ P+ ++++ W+
Sbjct: 70 GLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ 129
Query: 664 PPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720
PP NG I Y I + V + T + L+ Y + A N
Sbjct: 130 PPS--EANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 187
Query: 721 RAGTGPYSRP 730
G GP S
Sbjct: 188 SKGMGPMSEA 197
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 4e-11
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPP--PVGTHNGVIRTYQIIVGGGNNSALINMTVSAST 698
P P +L+ ++ + W P R Y + + +A+T
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+ L+T L Y S+ T + +S A
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 96
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-09
Identities = 32/249 (12%), Positives = 55/249 (22%), Gaps = 51/249 (20%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSR---NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PP + + + + W+ + Y V + ++ AT
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
VT L Y F V S S GT E + +
Sbjct: 65 SY-----------LVTGLKPNTLYEFSVMVTKGRRSSTWSM-----TAHGTTFELVPT-- 106
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--I 572
+ + K ++ + W+ + I
Sbjct: 107 -------------------SPPKDVT---------VVSKEGKPKTIIVNWQPPSEANGKI 138
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632
G IY + G + L + Y F + G S
Sbjct: 139 TGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198
Query: 633 AVRTLECEP 641
RT +
Sbjct: 199 QFRTPKAHH 207
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 21/110 (19%)
Query: 395 STYPGPPTKP------TLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSS 445
+T+ PT P + + W S N + GY + S
Sbjct: 99 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGK----ITGYIIYY--------S 146
Query: 446 PSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ WV + LT+ Y F ++A NS G+ S
Sbjct: 147 TDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE 196
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-26
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 19/179 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P V D+ L C R ++ W NG+ I +
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------PSYRFKAN 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y C T S L VL + +++ P +I + C +
Sbjct: 60 NNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETI-MLRCHSWKDKPL 115
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
+ V + + G + + + +G+Y C S T+TVQ
Sbjct: 116 VKVTFFQNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-16
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K + P V + C ++ W G+ +P ++
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFK 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
D+GEY C+ +S LTV +V + P E G + C P
Sbjct: 58 ANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTPHLEFQE-GETIMLRCHSWKDKP 114
Query: 218 PSTFWMLEGNRSLIYPGD 235
+ +S +
Sbjct: 115 LVKVTFFQNGKSQKFSHL 132
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-13
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+Q G+T +L C + P + + +NG F + +I
Sbjct: 88 LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-------DPTFSIPQ 140
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + G Y C S + V
Sbjct: 141 ANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 34/187 (18%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
+++ P + + C SP + W GN I +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNL---------------IPTH 49
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ + C + SD LTV ++L P +
Sbjct: 50 TQPSY-RFKANNNDSGEYT-CQTGQTSLSDPVH--LTVL-----FEWLVLQTPHLEFQEG 100
Query: 308 RSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
+ LRC + V +++ + D + + SG+Y C
Sbjct: 101 ET-IMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-----DPTFSIPQANHSHSGDYHCTGN 154
Query: 365 SPHGSAS 371
+ S
Sbjct: 155 IGYTLFS 161
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 10/85 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P + L CQ S+QW+ + T
Sbjct: 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPSYR 55
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWS 373
DSGEYTC S
Sbjct: 56 FKANNNDSGEYTCQTGQTSLSDPVH 80
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-26
Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 18/191 (9%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
T ++ C + +L + + R+ I + G
Sbjct: 21 ENKNKTVVIPCLGSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFTIPSYMISYAGMV 79
Query: 77 QCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGGD--AVLTV 131
C K + +S ++ V+ ++ +S +V C+ + +
Sbjct: 80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 132 HWKRLGSAMPEDRMSVLPSR------------SLQLSDVRLEDAGEYVCEAENAVGKISA 179
+W+ S ++ + +L + V D G Y C A + +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 180 SATLTVQMAPI 190
S + V PI
Sbjct: 200 STFVRVHEDPI 210
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 8e-16
Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 26/206 (12%)
Query: 189 PIVRERPSDLRLEV--GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
V ++ + + + V C S + + + G+R I+
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNR-------ISW 60
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
D I + + A ++ C S + + V V+L L
Sbjct: 61 DSKKGFTIPSYMISYAGMVF-CEAKINDESYQSIMYIVVVVG-YRIYDVVLSPSHGIELS 118
Query: 307 LRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVN-----------VTGDGSLVLTDV 351
+ + L C R E + W + VN +L + V
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
T+ D G YTC S + S +R
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVR 204
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 6e-04
Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 10/117 (8%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWR---GEREVGSGPR 337
S ++ V + N+T + C +V +R V G R
Sbjct: 4 SPFIASVSDQHGVVYITENKNKT------VVIPCLGSISNLNVSLCARYPEKRFVPDGNR 57
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
++ + +G C K S +
Sbjct: 58 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 114
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV-GSGPRVNVTGDG 344
+ PPVI GP NQT+ + L C G ++ W + V R+ +G
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG 62
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
L + D+G YTC+ +P G A+WSA + + P + R +P+ P P
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP-VQPPRPTDPNLIPSAP 118
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 1e-23
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
R P +Q VA T +L C G P PT++W+K+G + R++ ++ L I+
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVS-TQDSRIKQLENGVLQIR 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA 113
++ D GRY C+ +G + A + V ++ P+ T +
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFGVPVQPPRPTDPNL 113
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-23
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSD 157
P I +GP + TV+ V C G V T+ W++ G + R+ L + LQ+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
+L D G Y C A G+ + SA + VQ + + P + I +P
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL---------IPSAP 118
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-11
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P++R+ P + + V V C GSP P+ W +G + R+ + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG-VLVSTQDSRI-----KQLEN 61
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G+ L+I+ C+ +G A + V PV P + L
Sbjct: 62 GV--LQIRYAKLGDTGRYT-CIASTPSGEATWSAYIEVQEF---GVPVQPPRPTDPNL 113
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-26
Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 29/191 (15%)
Query: 17 VAAGDTALLECGPPR--GHPEPTLVWKKNGHP---------------IDFENSKRLRLVD 59
G+ L R PE + W K G I++ +
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 60 GTN---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
N L + + + DG Y C +K + L V+ + + + S+
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGET-EVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLS---DVRLEDAGEYVC 168
+ C+V V W P + SL ++ + C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 169 EAENAVGKISA 179
+N +
Sbjct: 182 VGKNDKEEAHG 192
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 1e-23
Identities = 28/204 (13%), Positives = 59/204 (28%), Gaps = 22/204 (10%)
Query: 80 VKNVAGTRES-TDAVLRVLVKP-----YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW 133
V G R + T RV + P + GP + V + +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRM-HHDVIFIEWPFRGFFD 59
Query: 134 KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE 193
+ + L ++ + G Y+C + +++ L+V +
Sbjct: 60 IHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV 109
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLL 252
+ C + P P W++ + P N DG +++
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG---VEPAPTAANGGVMKEKDGSLSVA 166
Query: 253 KIQNVSRTAAPLIILCLGVNAAGS 276
++ + L + C+G N
Sbjct: 167 VDLSLPKPWH-LPVTCVGKNDKEE 189
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 8e-19
Identities = 31/193 (16%), Positives = 46/193 (23%), Gaps = 31/193 (16%)
Query: 202 VGRDAVFLC---GIEGSPPPSTFWMLEGNRS-----------LIYPGDRVDNIQAEITSD 247
+G + P W G +I+ S
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L + + + + C + L+V P + P
Sbjct: 65 NTFFLVVTAANISHDGNYL--CRMKLGETEVTKQEHLSV-----VKPLTLSVHSERSQFP 117
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGS----GPRVNVTGDGSL---VLTDVTKEDSG 357
S + C V VQW E + V DGSL V + K
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 358 EYTCVVKSPHGSA 370
TCV K+ A
Sbjct: 178 PVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 9e-12
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 6/83 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAI 65
V + + + C P P + W P + + +L++
Sbjct: 107 LSVHSERSQFPDFSVLTVTC-TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSV 165
Query: 66 QDS---RKTDDGRYQCVVKNVAG 85
K CV KN
Sbjct: 166 AVDLSLPKPWHLPVTCVGKNDKE 188
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 17/103 (16%), Positives = 22/103 (21%), Gaps = 25/103 (24%)
Query: 304 TLPLRSEARLRCQVRG-----EGSVQWWR--------------------GEREVGSGPRV 338
T L L R E V W++ G
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
LV+T G Y C +K + L P
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP 104
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-25
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
+ + + + N ++ A + VKPY + D V S F+C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 122 SVGGDAVLTVHWKRLGSAMPED-RMSVLPSR----SLQLSDVRLEDAGEYVCEAENAVGK 176
V G V W + + + E + SL +S+V +D +Y C+A N++G+
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 177 ISASATLTVQMAPIVRERPSD 197
+ +A L V+ E +
Sbjct: 124 ATCTAELLVETMGKEGEGEGE 144
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 4e-19
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGT-N 62
F V G A +C G+P+P ++W K+ +P+ + S+ ++ +G +
Sbjct: 43 YFTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDNPV--KESRHFQIDYDEEGNCS 99
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT 110
L I + DD +Y C N G T A L V G +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCT-AELLVETMGKEGEGEGEGE 146
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-18
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEAR 312
I +S A +NA + A L P+ P + + S AR
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 313 LRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSP 366
C+V G + V W++ + V + D SL +++V +D +YTC +
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 367 HGSASWSASLRFESPTNP 384
G A+ +A L E+
Sbjct: 121 LGEATCTAELLVETMGKE 138
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 1e-16
Identities = 29/147 (19%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 155 LSDVRLEDAGEYVC----EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+S + + + EN + A + P + D+ + G A F C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCL 269
+EG P P W + N + Q + +G L I V A C
Sbjct: 64 KVEGYPDPEVMWFKDDNP--VKESRH---FQIDYDEEGNCSLTISEVCGDDDA--KYTCK 116
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVI 296
VN+ G A L V
Sbjct: 117 AVNSLGEATCTAELLVETMGKEGEGEG 143
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-25
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P+ V D+ L+C + + W N I ++ I +
Sbjct: 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS---------SQASSYFIDAAT 62
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + S L V + +++ P+ I C A+
Sbjct: 63 VNDSGEYRCQTNL---STLSDPVQLEVHIGWLLLQAPRWVFKEEDP-IHLRCHSWKNTAL 118
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
V + + G + + L+D+G Y C + S + +T+
Sbjct: 119 HKVTYLQNGKDRKYFH----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K + P+ +V + +C + W S + + S +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDA 60
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
+ D+GEY C+ +S L V + ++ + P + E C +
Sbjct: 61 ATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTA 117
Query: 218 PSTFWMLEGNRSLIYPGD 235
L+ + Y
Sbjct: 118 LHKVTYLQNGKDRKYFHH 135
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 8e-08
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P ++ + L+CQ + S QW+ E + + S +
Sbjct: 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-------SQASSYFI 58
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
T DSGEY C + S L + +AP P L
Sbjct: 59 DAATVNDSGEYRCQTN--LSTLSDPVQLEVHIG--WLL--LQAPRWVFKEEDPI--HLRC 110
Query: 409 QTANG---LTLAWSRNNQIGSSS 428
+ + + +N +
Sbjct: 111 HSWKNTALHKVTYLQNGKDRKYF 133
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 9e-08
Identities = 30/193 (15%), Positives = 50/193 (25%), Gaps = 35/193 (18%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+V P + C SP ST W + I+S
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL---------------ISSQ 52
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ I + + C + SD L V ++L P
Sbjct: 53 A-SSYFIDAATVNDSGEYR-CQTNLSTLSD--PVQLEVH-----IGWLLLQAPRWVFKEE 103
Query: 308 RSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC V + + ++ + + T +DSG Y C
Sbjct: 104 DP-IHLRCHSWKNTALHKVTYLQNGKDRKYFHH-----NSDFHIPKATLKDSGSYFCRGL 157
Query: 365 SPHGSASWSASLR 377
+ S S ++
Sbjct: 158 VGSKNVS-SETVN 169
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-25
Identities = 23/189 (12%), Positives = 49/189 (25%), Gaps = 26/189 (13%)
Query: 12 PKSQRVAA--GDTALLEC-GPPRGHPEPTLVWKKNGHPID----------FENSKRLRLV 58
+ G L+ + W+K F+ +L
Sbjct: 4 TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
L I+ + D Y+ + + G L++ + K
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTCINT 118
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
C V ++ + G + S+ + + ++ C A N V K
Sbjct: 119 TLTCEVMNGTDPELNLYQDGKHLKL-------SQRVITHKWTTSLSAKFKCTAGNKVSKE 171
Query: 178 SASATLTVQ 186
S+ ++
Sbjct: 172 SSVEPVSCP 180
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 18/181 (9%), Positives = 49/181 (27%), Gaps = 36/181 (19%)
Query: 121 CSVGGDAVLTVHWKRLG-------------SAMPEDRMSVLPSRSLQLSDVRLEDAGEYV 167
D + + W++ + +D + + +L++ ++ +D Y
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYK 82
Query: 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEV-GRDAVFLCGIEGSPPPSTFWMLEG 226
+ GK ++ ++ER S ++ + C + P +G
Sbjct: 83 VSIYDTKGKNVLEKIFDLK----IQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+ RV + + C N + + ++
Sbjct: 139 --KHLKLSQRVITHKWTTSLSAK----------------FKCTAGNKVSKESSVEPVSCP 180
Query: 287 G 287
Sbjct: 181 E 181
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-12
Identities = 22/186 (11%), Positives = 51/186 (27%), Gaps = 30/186 (16%)
Query: 202 VGRDAVFLCGI--EGSPPPSTFWMLEGNRSLIYPGDRVDNIQA-----EITSDGMNLLKI 254
+G+D W ++ I + ++ +G LKI
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT--LKI 70
Query: 255 QNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
+++ I + G ++ + + P I + N TL
Sbjct: 71 KHLKTDDQD--IYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTL-------- 120
Query: 314 RCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
C+V + ++ + + R ++ T S ++ C + S
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQR--------VITHKWTTSLSAKFKCTAGNKVSKES 172
Query: 372 WSASLR 377
+
Sbjct: 173 SVEPVS 178
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 323 VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR---FE 379
Q+ + + + +G+L + + +D Y + G E
Sbjct: 45 AQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104
Query: 380 SPTNPNI 386
+ P I
Sbjct: 105 RVSKPKI 111
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 59/334 (17%), Positives = 110/334 (32%), Gaps = 68/334 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
T + V+ T + + L W+ + SS+++GY++ + +G+
Sbjct: 94 PEVPQLTDLSFVDITDSSIGLRWTP---LNSSTIIGYRITV--------VAAGEGIPIFE 142
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
V ++V TVT L G+ Y V L + G SAP+ L+ + +
Sbjct: 143 DFVDSSVGY--YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP----------- 189
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
P L+ + ++++TW + +
Sbjct: 190 --------P------------TDLR-----------FTNIGPDTMRVTWAPPPSIDLTNF 218
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
+ + VA L++ + + ++T L + Y + + + P R
Sbjct: 219 LVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-----R 271
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ P D + A S + W P I Y+I + V
Sbjct: 272 GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV 326
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
S ++ LTNL+ G Y VS+ A N P
Sbjct: 327 PHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 60/346 (17%), Positives = 106/346 (30%), Gaps = 70/346 (20%)
Query: 398 PGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PPT L G LT++W R+ + + GY++ + +G +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITT-------TPTNGQQGNSLEE 52
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
V + S T NL+ GL Y V + S P
Sbjct: 53 VVHADQSS--CTFDNLSPGLEYNVSVYTVKDDKESVPI---------------------- 88
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVY 576
+ L +L+ +T +S+ L W LN+ I G
Sbjct: 89 -------------------SDTIIPEVPQLTDLS-FVDITDSSIGLRWTPLNSSTIIGYR 128
Query: 577 IYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
I + V + VTGL Y+ ++ + P+ L
Sbjct: 129 ITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA 186
Query: 637 LECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVS 695
L + ++ + W PPP + + + + N + +++S
Sbjct: 187 ----VPPPTDLR-FTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS 237
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
S ++LTNL G Y VS+++ P +G +
Sbjct: 238 PSDNAVVLTNLLPGTEYVVSVSSVYEQHEST---PLRGRQKTGLDS 280
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 34/247 (13%), Positives = 62/247 (25%), Gaps = 59/247 (23%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T PPT N + + + W+ S L + V SP +
Sbjct: 184 QTAVPPPTDLRFTNIGPDTMRVTWA---PPPSIDLTNFLVRY--------SPVKNEEDVA 232
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
+ ++ + + + +TNL G Y V ++ S P
Sbjct: 233 ELSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPL-------------------- 270
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEG 574
GR ++ + + +T+ S + W I G
Sbjct: 271 -----------RGRQKTGLDSPTGID-----------FSDITANSFTVHWIAPRAT-ITG 307
Query: 575 VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
I V + +T L + Y +V G +
Sbjct: 308 YRIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-QQ 364
Query: 635 RTLECEP 641
T+
Sbjct: 365 STVSAHH 371
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-24
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 90 TDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP 149
+ + V P KD V V +CSV G V + W G + R +
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA 61
Query: 150 SR-SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + D ED G Y C AENA+G++S SA +TV
Sbjct: 62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-18
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F K V G +L+C RG P P + W NG PI + ++ L IQ
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQPI--QYARSTCEAGVAELHIQ 69
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+ D G Y C+ +N G + A + V
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCS-AWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-18
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP 336
+ S + P + + + L+C VRG + W + +
Sbjct: 2 SSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
G L + D ED G YTC+ ++ G S SA +
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
+S + +++AP D + G+D V C + G+P P W+L G I
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ--PIQYARS-- 57
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
G+ L IQ+ T CL NA G A +TV
Sbjct: 58 -----TCEAGVAELHIQDALPEDHGTYT-------CLAENALGQVSCSAWVTV 98
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 58/338 (17%), Positives = 100/338 (29%), Gaps = 69/338 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PPT N + + + W+ S L + V SP +
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAP---PPSIDLTNFLVRY--------SPVKNEEDVAE 141
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
+ ++ + + + +TNL G Y V ++ S P + L
Sbjct: 142 LSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLD------------ 187
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
+ + +T+ S + W I G
Sbjct: 188 -------------------SPTGID-----------FSDITANSFTVHWIAPRAT-ITGY 216
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
I V + +T L + Y +V G +
Sbjct: 217 RIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI----- 269
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ S VP+ + V TS+L+ W P +R Y+I G G NS + TV
Sbjct: 270 GQQSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTV 324
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732
S T ++ L G+ Y++++ A G P S +
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 1e-20
Identities = 54/333 (16%), Positives = 95/333 (28%), Gaps = 68/333 (20%)
Query: 398 PGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PPT L G LT++W R+ + + GY++ + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPT---------NGQQGNSL 49
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
+ T NL+ GL Y V + S
Sbjct: 50 EEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESV------------------------ 85
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVY 576
P L+ + ++++TW + +
Sbjct: 86 -------PISDTIIPAVPPPTDLR-----------FTNIGPDTMRVTWAPPPSIDLTNFL 127
Query: 577 IYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ + VA L++ + + ++T L + Y + + + P R
Sbjct: 128 VRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-----RG 180
Query: 637 LECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM-TVS 695
+ P D + A S + W P I Y+I + S V
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVP 235
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
S ++ LTNL+ G Y VS+ A N P
Sbjct: 236 HSRNSITLTNLTPGTEYVVSIVALNGREESPLL 268
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
Query: 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
+ + ++WE T I G I + + ++ V+HA ++S L+ Y
Sbjct: 15 DTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSS-CTFDNLSPGLEYNV 73
Query: 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR 675
+ + P + + P+ + + T+ + ++ + W PPP + +
Sbjct: 74 SVYTVKDDKESVPISDT-IIPAVPPPTDL-RFTN---IGPDTMRVTWAPPP----SIDLT 124
Query: 676 TYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR 729
+ + N + +++S S ++LTNL G Y VS+++ R
Sbjct: 125 NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 179
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
ST P +V T L ++W + ++ Y++ +G +
Sbjct: 272 QSTVSDVPRDLEVVAATPTSLLISWDA----PAVTVRYYRITY--------GETGGNSPV 319
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V + + T++ L G+ YT V A+ G S S
Sbjct: 320 QEFTVPGSKST--ATISGLKPGVDYTITVYAVTGRGDSPASS 359
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 3e-24
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
G ++ V TL PS PQ ++N+ S+ + W PPP GT NG I Y+I
Sbjct: 12 PGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRH-RK 70
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T+ + L T L G +YS ++A GTGP S
Sbjct: 71 TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 4e-24
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---V 681
S RT + PS PQ V + +T+V + W PPP + NGVI Y + V
Sbjct: 2 SSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAV 61
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
G + + +S + L L Y V + A G GP S P
Sbjct: 62 DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP 110
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
M ST+V+++W D GV + +D + + E S + + G
Sbjct: 26 MCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVG 85
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATS 657
L ++ Y ++ G S+ VRT E PSG P+ V +S
Sbjct: 86 LEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPR---KVESGPSS 133
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 55/333 (16%), Positives = 96/333 (28%), Gaps = 68/333 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PT+ + + + + W+ LL Y G T
Sbjct: 13 PVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYG------------LVGGEGGKTT 60
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
R+ + +V L G Y + A+ S S +
Sbjct: 61 FRLQPPLSQ--YSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEI------------- 105
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
A ++L+ V T+TS+ L W+ + +
Sbjct: 106 ------------------DAPKNLR-----------VGSRTATSLDLEWDNSEAE-AQEY 135
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
+ L +L G + +T L + Y + S P+ + A R
Sbjct: 136 KVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA-R 194
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695
T P + +T + TS+ L W +G I Y+I + + +TV
Sbjct: 195 TELDSPRDL-MVTA---SSETSISLIWTKA-----SGPIDHYRITFTPSSGIS-SEVTVP 244
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ LT+L G Y +S+ A S
Sbjct: 245 RDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 59/243 (24%)
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
+ +T P + ++TA L L W + + Y+V YS + +G+
Sbjct: 99 TQFTTEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVV-YS------TLAGEQY 147
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511
V P+ T+T+L G Y + A+ + S P+ ++
Sbjct: 148 HEVLVPKGIG-PTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE---------- 196
Query: 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY 571
D + + L V + TS+ L W +
Sbjct: 197 ------------LD---------SPRDLM-----------VTASSETSISLIWTKASGP- 223
Query: 572 IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL 631
I+ I +S + + + + +T L + Y + G S +
Sbjct: 224 IDHYRITFTPSSGISSEVTVP----RDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Query: 632 RAV 634
A
Sbjct: 280 DAF 282
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN 685
G P + G Q+ ++ T ++W PP + ++ Y ++ G G
Sbjct: 1 GSPGISGGGGGIP-VIDGPTQIL-VRDVSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGG 57
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
+ + + L G RY VS++A S + P+
Sbjct: 58 KT---TFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPK 109
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 5e-24
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-GG 683
S AVRTL PS PQ + N+ S+++ W+PP T NG I Y+I
Sbjct: 2 SSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKA 61
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S + VS + + L+ L G Y+ +AA GTGP +
Sbjct: 62 SRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW 108
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 1e-23
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 13/197 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
K S + W + G + S A L + +T L Y
Sbjct: 13 NAKAAGSRKIHFNWLPPSGK-PMGYRVKYWIQGDSESEAHLLD---SKVPSVELTNLYPY 68
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
YE + + +G S+L + RT + PS +L ++++T L W P
Sbjct: 69 CDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLA-FNVVSSTVTQLSWAEPA--ET 125
Query: 671 NGVIRTYQIIVGGGNNSALIN------MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724
NG I Y++ G N+ + + LL+ NL Y ++ A N AG
Sbjct: 126 NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGW 185
Query: 725 GPYSRPALLSLTSGPEP 741
GP + T P
Sbjct: 186 GPEREAIINLATQPKRP 202
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697
G PQ + + + W PP +G Y++ +S + +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK 56
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
P++ LTNL Y + + A G GPYS
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 89
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 42/281 (14%), Positives = 78/281 (27%), Gaps = 64/281 (22%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
G P P + + W + +GY+V+ + GD+
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYW--------IQGDS---ESEA 50
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
+ P + +TNL Y V A + G P S + R T
Sbjct: 51 HLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCR-TH----------- 95
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--IEG- 574
+ P E + ++ST +L+W I
Sbjct: 96 ---QEVPSEPGRLA--------------------FNVVSSTVTQLSWAEPAETNGEITAY 132
Query: 575 --VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN-L 631
Y + P ++ + L+ L Y + + G+ G +
Sbjct: 133 EVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 192
Query: 632 RAVRTLECEPSGVPQLTDPVLLNATS-----VLLKWKPPPV 667
+ T P +P + D +++A S L + +
Sbjct: 193 INLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-23
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
S+ PP KP +N T + +TL W++ G + Y VE
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRD--------- 51
Query: 448 GDTATATWVRV-ATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR 503
W++ +N+ TV+ LT Y F V A N+ G +S PS SD I R
Sbjct: 52 --LPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 640 EPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIV--GGGNNSALINMTVS 695
P P PV LN T +V LKW P T I +Y + N +
Sbjct: 9 SPIDPP--GKPVPLNITRHTVTLKWAKPE-YTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGT-GPYSRP 730
++ L+ Y + A N AG P S P
Sbjct: 66 LEN-EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 100
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 2e-23
Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 60/237 (25%)
Query: 8 FRVQPKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNGHPIDFEN-------------- 51
V RV G++ L+ C + W + D
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67
Query: 52 --SKRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
R LV DG+ L +QD +K D+G Y C ++ + + + V P
Sbjct: 68 RFQNRSHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELWVLPEE- 124
Query: 104 RGPKDTTVSASSIIVFECSVGGD---AVLTVHWKRLGSAMPEDRMSVLPSR--------- 151
P+D V CS+ V V+W + E+ +
Sbjct: 125 --PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 152 -------------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S++L V+ D G Y C + + L V
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 6e-17
Identities = 38/257 (14%), Positives = 58/257 (22%), Gaps = 54/257 (21%)
Query: 95 RVLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRLGSAMPEDRMSVLPSR 151
R P + V ++ C V V V W +
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 152 ------------------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
SL L DV+ D G Y CE + + +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW- 119
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF---WMLEGNRS------LIYPGDRVD 238
++ E P DLR+ VG C I+ + WM L Y +
Sbjct: 120 --VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIIL-----------CLGVNAAGSDLARASLTVSG 287
+ + ++SR + + C L V
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Query: 288 PDPNPPPVILFGPANQT 304
P T
Sbjct: 238 ----DEFQRTISPTPPT 250
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 1e-14
Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 76/279 (27%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEG-------------NR 228
Q P + LR+ VG + C + E W+ +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 229 SLIYPG---DRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLT 284
+ G +R + +DG L +Q+V + C S + + +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGS--LLLQDVQKADEGIYT--CEIRLKNESMVMKKPVE 117
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE-----GSVQWWRGEREVGSGP--- 336
+ V+ P + + + ++RC ++ V W
Sbjct: 118 LW--------VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVL 169
Query: 337 -------------------RVNVTG-----DGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
RV++TG DGS+ L V + D G YTC + +
Sbjct: 170 SYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229
Query: 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
+ L + PT PT Q
Sbjct: 230 TIVLH------------VVQDEFQRTISPTPPTDKGQQG 256
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 7e-09
Identities = 32/228 (14%), Positives = 58/228 (25%), Gaps = 48/228 (21%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVR-----GEGSVQWWRGEREVGSGPRV--------- 338
P + + + + C V+ V W + + + V
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 339 --------------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTN 383
DGSL+L DV K D G YTC ++ + S + + P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 384 PNIGFFRAPEPSTYP-----GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
P R + + + T VN W ++ + +
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVN---------WMFSSGSHTEEETVLSYDSNM 175
Query: 439 RPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV---GLTYTFLVR 483
R S + + + + G YT +
Sbjct: 176 RSGKFQSLGRFRNRVDLTG-DISRNDGSIKLQTVKESDQG-IYTCSIY 221
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 34/150 (22%)
Query: 11 QPKSQRVAAGDTALLEC------------------GPPRGHPEPTLVWKKNGHPIDFENS 52
+P+ RV GDT + C E L + N F++
Sbjct: 124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSL 183
Query: 53 KRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
R R DG+ + +Q +++D G Y C + T VL V+ +
Sbjct: 184 GRFRNRVDLTGDISRNDGS-IKLQTVKESDQGIYTCSIYVGKLESRKT-IVLHVVQDEFQ 241
Query: 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVH 132
+ + G+ H
Sbjct: 242 RTISPTPPTDKGQ----QGILNGNQHHHHH 267
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS--R 151
+ V P I ++ T S I C+ G+ + W + + ED VL R
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+L + VR ED G Y C+A + +G A ++ A
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 5e-21
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAI 65
++Q + G++ + C G+P P ++W K+ + + L DG NL I
Sbjct: 12 TITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETL--VEDSGIVLKDGNRNLTI 68
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ RK D+G Y C +V G +A +
Sbjct: 69 RRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQ 102
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-20
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNV 340
LTV P I NQT + + C G + W++ + + +
Sbjct: 3 LTVL---ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 341 T-GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPNI 386
G+ +L + V KED G YTC S G A A + N+
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 6e-14
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
T+ ++AP + + +G C G+PPP W + + +
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE--TLVEDSGI---- 57
Query: 242 AEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
+ DG L I+ V + + C + G A + G
Sbjct: 58 --VLKDGNRNLTIRRVRKEDEG--LYTCQACSVLGCAKVEAFFIIEGAQEKT 105
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-23
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-----G 682
S + T E P G P + + S+ + WK P NGVIR YQI G
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++ M + + L NL +Y V + A NRAGTGP S
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 109
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
GPP TL T+ + + W + Q G + GYQ+ Y + G +
Sbjct: 17 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGV--IRGYQI-GYRE-----NSPGSNGQYSI 68
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V + S + T+ NL Y +V+A N G P S EI
Sbjct: 69 VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINAT 113
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEG------VYIYSRGLDPPASVAMLTVLHAGEASGFLV 604
++P+TS S+++TW+ + G + +++ + G++ + +
Sbjct: 23 TLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 82
Query: 605 TGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
L +++Y + F + G S+ TLE PS
Sbjct: 83 DNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PPT T+ + T +T+ W + IG++ L GY +E
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCF-----------E 49
Query: 451 ATATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T W+ + + T+T L V+A+N+ G S P S I+++
Sbjct: 50 GTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSAS 697
P + + + T+V ++W+PP + Y + G + + N +
Sbjct: 9 SPPTLLTVDS---VTDTTVTMRWRPPD-HIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T +T L + V + A N AG
Sbjct: 65 T-KFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 8e-23
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLS 156
P I++GP + T++ + +C GD + + W + G P R ++ +LQ+
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++R+ D G Y C A ++ G+ S SA L V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-22
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV-GSGPRVNVTGDG 344
+ PP+IL GPANQTL + A L+C+ G + W + G PR + G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L + ++ D+G YTCV S G SWSA L
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-19
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
P +Q +A TALL+C G P P + W K G + + GT L I+
Sbjct: 10 IILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQIK 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ R +D G Y CV + +G + AVL V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWS-AVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
PI+ + P++ L V A+ C G P P W+ EG + R I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG-FTFPGRDPRA-----TIQEQ 61
Query: 248 GMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
G L+I+N+ T C+ +++G A L V+
Sbjct: 62 GT--LQIKNLRISDTGTYT-------CVATSSSGETSWSAVLDVTE 98
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 1e-22
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MSVL 148
+ + I+ P+ TV F C G+ V TV W R G + +
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ ++S V+ D G Y EN+ GK A TLT+Q
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-19
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLV 347
IL P + T+ AR C G +V W R + + + R VT +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASL 376
++ V D G Y+ VV++ G +L
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTL 102
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 4e-19
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+P+S V G++A C G P PT+ W + G + S R ++ +
Sbjct: 16 RILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVL--STSARHQVTTTKYKSTF 72
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + +D+G Y VV+N G +E+ L +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAE-FTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ +A + +P + + G A F C +G P P+ W+ +G + R
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV--LSTSARHQVTT 65
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ + +I +V + + N+ G A +LT+
Sbjct: 66 ----TKYKSTFEISSVQASDEGNYS-------VVVENSEGKQEAEFTLTI 104
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 626 GKPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S T E PS P +T + ++ +V ++W PP +G + Y+I
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
S + V + ++ +V +AA R G GP+S P + + + P
Sbjct: 63 SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGP 121
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 54/331 (16%), Positives = 93/331 (28%), Gaps = 71/331 (21%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PT T L+ W+ N L GY+V + +P T +
Sbjct: 21 IPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRV--------TPKEKTGPMKEIN 68
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
+A + S + V+ L V Y V AL S P + +V
Sbjct: 69 LAPDSSS--VVVSGLMVATKYEVSVYALKDTLTSRP---AQGVVTTLE------------ 111
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYI 577
+ R V T T++ ++W I G +
Sbjct: 112 -------NVSPPRRAR------------------VTDATETTITISWRTKTET-ITGFQV 145
Query: 578 YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637
+ + + + + +TGL + Y+ +L + P + A
Sbjct: 146 DAVPANGQTPI---QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA---- 198
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG--GGNNSALINMTVS 695
L + S+L+ W+PP I Y I G ++
Sbjct: 199 STAIDAPSNLR-FLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRP 252
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
T +T L G Y++ + A
Sbjct: 253 GVT-EATITGLEPGTEYTIYVIALKNNQKSE 282
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ +T TS+ W N + G + + + + + A ++S +V+GL
Sbjct: 28 KFTQVTPTSLSAQWTPPNVQ-LTGYRVRVTPKEKTGPMKEINL--APDSSSVVVSGLMVA 84
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
++YE + ++ +P+ P ++TD T++ + W+
Sbjct: 85 TKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTD---ATETTITISWRTK----- 136
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
I +Q+ N I T+ + +T L G Y + L N
Sbjct: 137 TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 194
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 60/240 (25%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
PP + + + T +T++W + ++ G+QV+
Sbjct: 109 TLENVSPPRRARVTDATETTITISWRT----KTETITGFQVD-AV----------PANGQ 153
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSE 513
T ++ T+T L G Y + LN + S+P S
Sbjct: 154 TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP-------------VVIDAST 200
Query: 514 GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIE 573
D A +L+ T S+ ++W+ I
Sbjct: 201 A---------ID---------APSNLR-----------FLATTPNSLLVSWQPPRAR-IT 230
Query: 574 GVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA 633
G I P + + +TGL + Y +++ + +P R
Sbjct: 231 GYIIKYEKPGSPPREVVPRP--RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711
+ TS+ +W PP N + Y++ + + + ++ + +++++ L +
Sbjct: 32 VTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATK 86
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
Y VS+ A T ++ + +L + PR
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPPR 117
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-22
Identities = 47/254 (18%), Positives = 77/254 (30%), Gaps = 60/254 (23%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PPT P + + + L W ++ ++V+ W
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRM----------VGKRKNWQT 50
Query: 458 VATNVPSPIL------------TVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
N+P +VT+L TY F + A+ S+ + S S + L+
Sbjct: 51 TNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG 110
Query: 506 FSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE 565
+ P EL E++ + T+V L W
Sbjct: 111 AALDPMPV----------P-----------------------ELLEIEEYSETAVVLHWS 137
Query: 566 ILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622
+ + I G Y Y R T+ A F + L + YEF L F
Sbjct: 138 LASDADEHLITGYYAYYRPSSSAGEYFKATI-EGAHARSFKIAPLETATMYEFKLQSFSA 196
Query: 623 SVDGKPSNLRAVRT 636
+ + S L+ RT
Sbjct: 197 ASASEFSALKQGRT 210
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 21/200 (10%)
Query: 551 EVKPMTSTSVKLTWEILNTD-------YIE-----GVYIYSRGLDPPASVAMLTVLHAGE 598
V ++ SV L W + D ++ + D G+
Sbjct: 9 NVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGK 68
Query: 599 ASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN----LRAVRTLECEPSGVPQLTDPVLLN 654
+ VT L Y F ++ + + D K SN +P VP+L + +
Sbjct: 69 SFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYS 128
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711
T+V+L W +I Y + + + + + L
Sbjct: 129 ETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR-SFKIAPLETATM 186
Query: 712 YSVSLAATNRAGTGPYSRPA 731
Y L + + A +S
Sbjct: 187 YEFKLQSFSAASASEFSALK 206
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 3e-12
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P + + + L WS + + GY RP S+ + +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYY--RPSSSAGE--------YFK 165
Query: 458 VA-TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + L Y F +++ ++ S S L R
Sbjct: 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 18/114 (15%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINMTVSAS 697
P P +T L+ SV+L+W P I +++ VG N N +
Sbjct: 4 PPTPPNVTR---LSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 58
Query: 698 TP----------TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
P T +T+L Y + A S +
Sbjct: 59 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 112
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-22
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ + S PGPP+KP + + T N +TL+W G+ Y +E +S
Sbjct: 7 GKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTP-GTLPASAYIIEAFS---------- 55
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + +W VA +V + + TV L Y F+VRA+N GLS PSP+SD + +
Sbjct: 56 QSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSAST 698
P PQ+TD + SV L W+P G Y I +++ + T
Sbjct: 17 GPPSKPQVTD---VTKNSVTLSWQPGTPG--TLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L Y + A N G S + T P
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 4e-22
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F +P+S++V GD+ LEC P P L WK+N + F + D T L
Sbjct: 17 MFIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
I+D K D G Y N AG L V +P
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQT 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 7e-22
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMS 146
P I P+ V + EC + + WKR DR+S
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS 64
Query: 147 VLPSR----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ +L + DV +DAG Y A N G + + L V P
Sbjct: 65 LYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
+G + + AP+ +P ++ G C I PPP FW + +
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQFN 59
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
DR+ Q G L I++V++ A VN AG L V+
Sbjct: 60 TDRISLYQDN---TGRVTLLIKDVNKKDAG--WYTVSAVNEAGVTTCNTRLDVTARPNQT 114
Query: 293 PP 294
P
Sbjct: 115 LP 116
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-16
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR-----VNVT 341
+ P+ ++ P ++ + +L CQ+ + W R V + T
Sbjct: 11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
G +L++ DV K+D+G YT + G + + L + N
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 94.5 bits (234), Expect = 4e-22
Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 23/202 (11%)
Query: 7 EFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
+ P+S+ +A GD+ L C G P W+ N K + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTC-STTGCESPFFSWRTQI--DSPLNGKVTNEGTTSTLTM 58
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
++ Y C + E + + P + A I +CSV
Sbjct: 59 NPVSFGNEHSYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVAD 117
Query: 126 D---AVLTVHWKRLGSAMP--------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
L + + M + + S + + V + VC A+ +
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177
Query: 175 GK-------ISASATLTVQMAP 189
+ A L V ++P
Sbjct: 178 DEMDSVPTVRQAVKELQVYISP 199
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 82.9 bits (204), Expect = 4e-18
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 7/168 (4%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPEDRMSVLPSRS 152
++ P + CS G W+ + S + + + +
Sbjct: 1 FKIETTP-----ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTST 55
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
L ++ V + Y+C A K+ + + P E LE G+ C +
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV 115
Query: 213 EGSPP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
P L L+ + +++ + + V
Sbjct: 116 ADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE 163
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 2e-16
Identities = 24/200 (12%), Positives = 47/200 (23%), Gaps = 27/200 (13%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254
S ++G C G P W + + L + L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---------GKVTNEGTTSTLTM 58
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLR 314
VS LC + + + +P + L ++
Sbjct: 59 NPVSFGNEH-SYLCTATCESRKLEKGIQVEIYSFPKDPEI-----HLSGPLEAGKPITVK 112
Query: 315 CQVRG-----EGSVQWWRGEREVGSGPRVN-------VTGDGSLVLTDVTKEDSGEYTCV 362
C V + +G+ + S + T + T V ++ C
Sbjct: 113 CSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCR 172
Query: 363 VKSPHGSASWSASLRFESPT 382
K ++R
Sbjct: 173 AKLHIDEMDSVPTVRQAVKE 192
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 3e-07
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPID----FENSKRLRLV 58
+ S + AG ++C +P + K H + E++ R L
Sbjct: 91 FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 59 DGTNLAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT 109
+ D G+ C K +S V + + + + PK+T
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 4e-07
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 14/122 (11%)
Query: 311 ARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
L C G W +G N +L + V+ + Y C
Sbjct: 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78
Query: 369 SASWSASLRFESPTN----PNIGFFRAPEPSTY--PGPPTKPTLVNQTANGLTLAWSRNN 422
+ S G A +P T P + L + + +
Sbjct: 79 KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYP------FDRLEIDLLKGD 132
Query: 423 QI 424
+
Sbjct: 133 HL 134
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 7e-22
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ P P P L L+L WS+ + S + Y +EM +
Sbjct: 1 GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEME-----------EE 49
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + + TV NL Y F V A NS G S PS + +
Sbjct: 50 TSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP 102
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 636 TLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ PS P LT T + L+W P GT + +Y + + +
Sbjct: 3 SGSSGPSMPASPVLTK---AGITWLSLQWSKPS-GTPSDEGISYILEMEEETSGYGFKPK 58
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ NL +Y + A N G S + P
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGP 106
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 9e-22
Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 30/195 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------------ENSKRL 55
P G++ L P G + W N + F + KRL
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 56 RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV--LVKPYIIRGPKDTTVSA 113
+L + + + D G Y+ + + S+ + + L + + +
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-LFQNM 123
Query: 114 SSIIVFECSV--GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS-DVRLEDAGEYVCEA 170
+ + CSV D V + W+ LG+ ++ +L +S D R+ +Y C A
Sbjct: 124 TCELHLTCSVEDADDNV-SFRWEALGN-------TLSSQPNLTVSWDPRISSEQDYTCIA 175
Query: 171 ENAVGKISASATLTV 185
ENAV +S S +
Sbjct: 176 ENAVSNLSFSVSAQK 190
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 8e-07
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 117 IVFECSV-GGDAVLTVHWKRLGSA-------------------MPEDRMSVLPSRSLQLS 156
+ G+ V + W ++ R++ S SLQLS
Sbjct: 16 VTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLS 75
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLT-VQMAPIVRERPSDLRLEVGRDAVFL--CGIE 213
++++ED G Y + +S TL ++ ++ + + L +
Sbjct: 76 NLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED 135
Query: 214 GSPPPSTFWMLEGNRSL 230
S W GN
Sbjct: 136 ADDNVSFRWEALGNTLS 152
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 24/189 (12%)
Query: 202 VGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
+G + W+ N + + + EI K N +++
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLF--NETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 261 AAPLIILCLGVNAAGS---------DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311
+ L + L + GS +S T+ + + E
Sbjct: 70 YS-LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCEL 127
Query: 312 RLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
L C V S +W + S P + V+ D +YTC+ ++
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAENAVS 180
Query: 369 SASWSASLR 377
+ S+S S +
Sbjct: 181 NLSFSVSAQ 189
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 5e-05
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPNIGFFRAPE 393
G R+N T SL L+++ ED+G Y + + + S +LR N +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT----NH 116
Query: 394 PSTYPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSS 428
+ + L + ++ W SS
Sbjct: 117 SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ 154
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 272 NAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE 331
++ S A LTV P G N+ + A LRC++ V+WW+G
Sbjct: 2 SSGSSGRTSAMLTVRAL----PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKGHET 57
Query: 332 VGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
+ G R ++ DG L + + ED+GEY C+ G SA L P+ P
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP 110
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-18
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 84 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-P 141
+G+ T A+L V P G ++ + + V C + A V W + +
Sbjct: 3 SGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRD 60
Query: 142 EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
DR S+ LQ+ + EDAGEY+C GK SA LTV+ P
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP 107
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 8e-14
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+F +++ G TA+L C + W K + + R L DG L
Sbjct: 21 KFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHETL--RDGDRHSLRQDGARCEL 75
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I+ D G Y C+ E T A+L V P
Sbjct: 76 QIRGLVAEDAGEYLCMCGK-----ERTSAMLTVRAMP 107
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 9e-09
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 172 NAVGKISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSL 230
++ SA LTV+ + E + G AV C + P W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHE--T 57
Query: 231 IYPGDRVDNIQAEITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+ GDR + DG L+I+ + A LC+ G + A LTV
Sbjct: 58 LRDGDRH-----SLRQDGARCELQIRGLVAEDAG--EYLCM----CGKERTSAMLTVRAM 106
Query: 289 DPNPP 293
P+ P
Sbjct: 107 -PSGP 110
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-21
Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 19/182 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P+ RV D+ L+C + + W N I ++ I +
Sbjct: 12 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS---------SQASSYFIDAAT 62
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + + S L V + +++ P+ I C A+
Sbjct: 63 VDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPRWVFKEEDP-IHLRCHSWKNTAL 118
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KISASATLTVQM 187
V + + G + + L+D+G Y C S + +T+
Sbjct: 119 HKVTYLQNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Query: 188 AP 189
Sbjct: 175 GL 176
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-16
Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 25/209 (11%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155
L K + P+ V + +C + W S + + S +
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFI 58
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
++D+GEY C+ + +S L V + ++ + P + E C +
Sbjct: 59 DAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKN 115
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
L+ + Y D I + + C G+ +
Sbjct: 116 TALHKVTYLQNGKGRKYFHHNSD-------------FYIPKATLKDSGSYF-CRGLVGSK 161
Query: 276 SDL-ARASLTVSGPDPNPPPVILFGPANQ 303
+ +T++ F P Q
Sbjct: 162 NVSSETVQITITQGLAVSTISSFFPPGYQ 190
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q D L C + + + +NG + + ++ I +
Sbjct: 93 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH-------NSDFYIPKAT 145
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
D G Y C + S + + +
Sbjct: 146 LKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P + + L+CQ + S QW+ E + + S +
Sbjct: 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-------SQASSYFI 58
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-- 406
T +DSGEY C + + S L + +AP P L
Sbjct: 59 DAATVDDSGEYRCQTQ--LSTLSDPVQLEVHIG--WLL--LQAPRWVFKEEDPI--HLRC 110
Query: 407 -VNQTANGLTLAWSRNNQIGSSS 428
+ + + +N +
Sbjct: 111 HSWKNTALHKVTYLQNGKGRKYF 133
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 5e-07
Identities = 34/218 (15%), Positives = 56/218 (25%), Gaps = 38/218 (17%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+V P R+ C SP ST W + I+S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESL---------------ISSQ 52
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ I + + C + SD L V ++L P
Sbjct: 53 ASSYF-IDAATVDDSGEYR-CQTQLSTLSD--PVQLEVH-----IGWLLLQAPRWVFKE- 102
Query: 308 RSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC + V + + + + + T +DSG Y C
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKGRKY-----FHHNSDFYIPKATLKDSGSYFCRGL 157
Query: 365 SPHGSASWSASLR---FESPTNPNIGFFRAPEPSTYPG 399
+ S S +++ + I F P
Sbjct: 158 VGSKNVS-SETVQITITQGLAVSTISSFFPPGYQGKKK 194
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGPP + + + L W+ G++++ GY ++ D + W
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKA-----------DKKSMEWFT 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
V + T+T L +G Y F V + N GLS + ++ E
Sbjct: 67 VIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
P + ++ D + +V L W PP N I Y I + +
Sbjct: 19 GPPQIVKIED---VWGENVALTWTPPKD-DGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRL 743
+ +T L G Y + + N G + S + ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 2e-21
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P T+ + T TL W ++IG+ + GY VE + WV
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYC-----------LEGSEEWVP 57
Query: 458 VAT-NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V TV +L G F V +N G S P+ L + +R
Sbjct: 58 ANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMT 693
+ P+ PQ + T+ LKW+PP G I Y + + G N
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDR-IGAGGIDGYLVEYCLEGSEEWVPAN-K 60
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +L G R + N AG +
Sbjct: 61 EPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 98.5 bits (244), Expect = 4e-21
Identities = 52/394 (13%), Positives = 100/394 (25%), Gaps = 81/394 (20%)
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
+ S + + T+ P P P V+ +++ + L W
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQ--TDATN-----------PSVPLDPISVSNSSSQIILKW 615
Query: 419 S----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
N I Y V + + + +
Sbjct: 616 KPPSDPNGNI-----THYLVFWERQA--------EDSELFELDYCLKGLKLPSR------ 656
Query: 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRR 534
T++ + +S + +
Sbjct: 657 --TWSPPFESEDSQKHNQSEYED--------------------------SAGECCSCPKT 688
Query: 535 ARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVL 594
Q L+E S T + + + + + V+
Sbjct: 689 DSQILKELEESSFRKT----FEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVV 744
Query: 595 HAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA---VRTLECE-PSGVPQLTDP 650
+ +++GL H++ Y L + ++ A RT+ +
Sbjct: 745 NKES---LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801
Query: 651 VLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLS 707
+ V L W+ P NG+I Y++ G A L LS
Sbjct: 802 EIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLS 859
Query: 708 AGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G YSV + AT+ AG G ++ P +T +
Sbjct: 860 PG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLDV 892
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 5e-12
Identities = 42/376 (11%), Positives = 88/376 (23%), Gaps = 67/376 (17%)
Query: 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMY 437
+I + ++ K + + + + + L W LLG+ +
Sbjct: 449 KGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYK 508
Query: 438 SRPLPSSSPSG-------------DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRA 484
P + + D + P + L Y V+
Sbjct: 509 EAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKT 568
Query: 485 LN--SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542
L S SD I ++ T P
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQ-T--------------DATNP------------------ 595
Query: 543 GGSLIELTEVKPMTSTSVKLTWEILNTDY--IEGVYIYSRGLDPPASVAMLTVLHAGEAS 600
S+ +S+ + L W+ + I ++ + + L G
Sbjct: 596 --SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL 653
Query: 601 GFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLL 660
+ + + P Q+ + +S
Sbjct: 654 P--------SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL--EESSFRK 703
Query: 661 KWKPP-----PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715
++ V + R+ + GNN + +L+++ L Y +
Sbjct: 704 TFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIE 763
Query: 716 LAATNRAGTGPYSRPA 731
L A N+ A
Sbjct: 764 LQACNQDTPEERCSVA 779
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 6e-06
Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 29/221 (13%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARL-------RCQVRGEGSVQWWRGEREVGSGP 336
P IL + E L R + P
Sbjct: 680 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRP 739
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSASLRFESPTNPNIGFFRAPEP 394
V SLV++ + Y ++ + + R
Sbjct: 740 FEKVVNKESLVISGLRH--FTGYRIELQACNQDTPEERCSV--------AAYVSARTMPE 789
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
+ T N + L W + ++ Y+V GD
Sbjct: 790 AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVLYEVSYR--------RYGDEELHL 840
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ L+ G Y+ +RA + G + +
Sbjct: 841 CDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE 880
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 30/263 (11%), Positives = 60/263 (22%), Gaps = 57/263 (21%)
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
S + +++ T +N + + R L +G+
Sbjct: 681 ECCSCPKTDSQILKELEESSFRKTFEDYLHNVV-----FVPRPSRKRRSLGDVGNAGNNE 735
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511
N S L ++ L Y ++A N ++ + R
Sbjct: 736 EHRPFEKVVNKES--LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAK-- 791
Query: 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE------ 565
D ++ + + V L W+
Sbjct: 792 ------------AD-------------------DIVGPVTHEIFENNVVHLMWQEPKEPN 820
Query: 566 --ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623
I+ Y + R T H G + GL Y + +
Sbjct: 821 GLIVL--YE----VSYRRYGDEELHLCDTRKHFALERGCRLRGL-SPGNYSVRIRATSLA 873
Query: 624 VDGKPSNLRAVRTLECE--PSGV 644
+G + + PS +
Sbjct: 874 GNGSWTEPTYFYVTDYLDVPSNI 896
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-21
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694
+ PSG PQ L ++ L W PP + NG I +Y ++ N+ +
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ--ELQN 59
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ LT L Y + + A G+GP S
Sbjct: 60 ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS 95
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 30/114 (26%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
PS G P + T + LAW + G ++ Y V R + S +
Sbjct: 7 GPS---GFPQNLHVTGLTTSTTELAWDPPVLAERNGR--IISYTV--VFRDINSQQELQN 59
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T T T+T L TY VRA S G PLS I R
Sbjct: 60 ITTDTRF-----------TLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 7e-21
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---R 151
+ KP I+ G +DTTVS+ S+ F G+ T W + G A+ + + +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L++ D+G Y C +N+ G +S+S LT++
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-18
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLV 347
PVI+ G + T+ S A+ + G + W + + + G + ++ D L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ DSG YTC VK+ GS S S L
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 7e-18
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ V++ A G P PT +W K+G I + +L G L
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFFL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + +D G Y C VKN AG+ S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGS-VSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-11
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ P++ D + A F G P P+ W +G I G + ++
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGK--AITQGGKY-----KL 55
Query: 245 TSD-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ D G L+I + + + C N+AGS + LT+
Sbjct: 56 SEDKGGFFLEIHKTDTSDSG--LYTCTVKNSAGSVSSSCKLTIKA 98
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 97.3 bits (241), Expect = 8e-21
Identities = 53/411 (12%), Positives = 97/411 (23%), Gaps = 86/411 (20%)
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
E SG C + +L P P + +
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYKGVP----------------LKPRKELRFTELQSG 175
Query: 413 GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
L + WS S + Y V+ S T W VA + +T++
Sbjct: 176 QLEVKWSSKFN-ISIEPVIYVVQRRWNYGIHPSEDDAT---HWQTVAQ-TTDERVQLTDI 230
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532
Y F V A+N HG + S S +L
Sbjct: 231 RPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP-----------------PAPANL 273
Query: 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--IEGVYIYSRGLDPPASVAM 590
R + + V S +V + W++ + ++ + S+
Sbjct: 274 R-------------LANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVP 320
Query: 591 LTVLHA----GEASGFLVTGLAHYSRYEF----------------FLVPFFGSVDGKPSN 630
G + ++ L Y + F S +
Sbjct: 321 TKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNK 380
Query: 631 LRAVRTLECEPSGVPQLTDPV------------LLNATSVLLKWKPPPVGTHNG-VIRTY 677
+ V+T + V + WK T N +R +
Sbjct: 381 EQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWF 440
Query: 678 QIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + ++L +LS +Y V++
Sbjct: 441 PEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE 491
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 95.4 bits (236), Expect = 3e-20
Identities = 71/518 (13%), Positives = 141/518 (27%), Gaps = 96/518 (18%)
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-------V 323
N G G P + F + ++ + S V
Sbjct: 142 SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSG-----QLEVKWSSKFNISIEPVIYVV 196
Query: 324 QWWRG------EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSAS 375
Q E + V T D + LTD+ S Y V + HG+ ++A
Sbjct: 197 QRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRP--SRWYQFRVAAVNVHGTRGFTAP 254
Query: 376 LRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG-----LTLAWS----RNNQIGS 426
+ FR+ + + P P L N T N +T+ W + +
Sbjct: 255 SKH----------FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV-- 302
Query: 427 SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALN 486
Y+V S T R T+ + + L Y ++A+
Sbjct: 303 ---HHYKVFW----SWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAIT 355
Query: 487 SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSL 546
G + S ++ L T + ++ + RR + L+ G
Sbjct: 356 YWGQTRLK--SAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG---- 409
Query: 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG--FLV 604
VK+ W+ + ++ + + +G ++
Sbjct: 410 ---APFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIIL 466
Query: 605 TGLAHYSRYEFFLVPFFGSVDGKPSNL------------RAVRTLECEPSGVPQLTDPVL 652
L+ +Y+ + P K + ++ + + C L+ +
Sbjct: 467 QDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLA 526
Query: 653 ------------LNATSVLLKWKPPPVGTHNGVIRTYQI----IVGGGNNSALINMTVS- 695
+ WK + +Q+ + ++L N +S
Sbjct: 527 KPENLSASFIVQDVNITGHFSWKMAKA-NLYQPMTGFQVTWAEVTTESRQNSLPNSIISQ 585
Query: 696 -----ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ L + NL Y + + G GP +
Sbjct: 586 SQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 71.9 bits (175), Expect = 5e-13
Identities = 27/212 (12%), Positives = 57/212 (26%), Gaps = 24/212 (11%)
Query: 551 EVKPMTSTSVKLTWE-------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ S +++ W ++ + Y + TV +
Sbjct: 168 RFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDER-VQ 226
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT------- 656
+T + Y+F + + +PS P + L N+T
Sbjct: 227 LTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSV 286
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-------MTVSASTPTLLLTNLSAG 709
+V + W P + + Y++ +S + T +++L L
Sbjct: 287 TVTIVWDLPE--EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPD 344
Query: 710 IRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y V L A G + +
Sbjct: 345 CDYVVELQAITYWGQTRLKSAKVSLHFTSTHA 376
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 1e-07
Identities = 65/500 (13%), Positives = 133/500 (26%), Gaps = 81/500 (16%)
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FECSVGGDAV 128
G +C N G L V + + T + + + V + ++ + V
Sbjct: 134 CSGVKKCCS-NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPV 192
Query: 129 L-TVHWKRLGSAMPEDRMS-----VLPSRSLQLSDVRLEDAGEY---VCEAENAVGKISA 179
+ V + P + + V + ++ + + Y V A N G
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVA-AVNVHGTRGF 251
Query: 180 SA---TLTVQMAPIVRERPSDLRLEVGRDAVFLCG---IEGSPPPST---------FWML 224
+A P P++LRL I P FW
Sbjct: 252 TAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSW 311
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLA 279
+ + P + + + T N + ++ + + ++ + G S
Sbjct: 312 MVSSKSLVPTKKK---RRKTTDGFQNSVILEKL-QPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS----------------- 322
T + N ++ L + R + G+
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 323 ---------VQWW----RGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
V+W+ R GS +T + ++L D++ + T P
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487
Query: 370 ASWS---------ASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG---LTLA 417
+ ++L+ +S S P + + +
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFS 547
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477
W + G+QV ++ S + + +LTV NL
Sbjct: 548 WKMAKANLYQPMTGFQVT-WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTL 606
Query: 478 YTFLVRALNSHGLSAPSPLS 497
Y V+ L G + +
Sbjct: 607 YRLEVQVLTPGGEGPATIKT 626
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 3e-07
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 10/142 (7%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-----IRTYQIIVG 682
+ + P + L + + +KW + V R I
Sbjct: 147 HTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHP 206
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG---- 738
+++ + + LT++ Y +AA N GT ++ P+ +S
Sbjct: 207 SEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSA 266
Query: 739 -PEPRLEDWASQSGRSRGDGTM 759
P P A+ + S G T+
Sbjct: 267 PPAPANLRLANSTVNSDGSVTV 288
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-20
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL 148
S+ + L + ++ P+ V+ + C V +HW + G + +
Sbjct: 2 SSGSS--GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGV-----PLPLP 54
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
PS L L ++ +D G Y C A ++ S +++
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 7e-20
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
L + V+P+ VA G T L C P P P + W K+G P+ S L
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLI---- 60
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ + D G Y CV + + + + AV +++P
Sbjct: 61 ----LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
++ P + L C+V + + W + G + + L+L +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------GVPLPLPPSPVLILPE 63
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLR 377
+ +D G Y+CV S ++
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVS 90
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 28/118 (23%)
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
S+ + + P + G C + P P WM +G
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP---------- 50
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ +L + + + C+ +++ ++++S +P
Sbjct: 51 -----LPLPPSPVLILPEIGPQDQGTYS-------CVATHSSHGPQESRAVSISIIEP 96
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV------- 681
S+ + + E P P ++N+T + W P P+ + G ++ Y+I
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 682 -GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
+ +T S +L L Y++++ N G GP S + + G
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 741 P 741
P
Sbjct: 122 P 122
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P + + + W + G L GY++ Y + SS +
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH--LQGYRI-YYWKTQSSSKRNRRHIEKKI 72
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + L YT VR +N G SP
Sbjct: 73 LTFQGSKTH--GMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-20
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ P+ Q+V AG++ L G T W K I + S+ +++ +G+ L
Sbjct: 9 QIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQI--QESEHMKVENSENGSKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I +R+ G Y +V+N G+R++ L V+ KP
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-17
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQL 155
P II+ P+D V A + V G +T W + + E M V S L +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R E G Y EN +G A LTV P
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLV 347
P I+ P +Q + L +V G + W + +++ + V L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
+ +E G YT +V++ GS +L P+P G P+ P+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK----------PDPPA--GTPSGPS 112
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-12
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
P + + P D ++ G + G+ P + WM + I + + ++
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ--IQESEHM-KVE---N 58
Query: 246 SDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
S+ + L I + L N GS A+ +LTV P+PP GP+
Sbjct: 59 SENGSKLTILAARQEHCG--CYTLLVENKLGSRQAQVNLTVVDK-PDPPAGTPSGPS 112
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 91.5 bits (226), Expect = 2e-20
Identities = 51/308 (16%), Positives = 87/308 (28%), Gaps = 38/308 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C P L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQP-KLLGIE------TPLPKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG- 125
S +D + C G + + + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 126 --DAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG------- 175
A LTV R + E + + + R + C E +
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 176 -KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPS--TFWMLEGNRSLI 231
SA L + P + S LEV +C ++G P S + G++ L
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL- 232
Query: 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP---LIILCLGVNAAGSDLARASLTVSGP 288
+T + +VS TA + C + S ++T+
Sbjct: 233 ---------NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI--- 280
Query: 289 DPNPPPVI 296
P P +
Sbjct: 281 YSFPAPNV 288
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-14
Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 32/298 (10%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
P + ++ CS D + + L + +LS+V+ +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL--PGNNRKVYELSNVQ--EDS 61
Query: 165 EYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TF 221
+ +C + G+ +A LTV P V P VG++ C +EG P + T
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 222 WMLEGNRSLIY------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
+L G + L P + + G N L + G+
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF-------SCRTELDLRPQGLELFE 174
Query: 276 SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGER 330
+ A L PP + + + L + ++ + C + G E V G++
Sbjct: 175 NTSAPYQLQTFVLPATPPQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Query: 331 EVGSGPRVNVTGDGSLVLTDVTKEDSG--EYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + VT ED G TC V + S ++ S PN+
Sbjct: 231 RLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 8e-11
Identities = 39/218 (17%), Positives = 62/218 (28%), Gaps = 26/218 (11%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW-MLEGNRSLIYPGDRVDNIQAEITSDGM 249
PS + L G + C P + L+ PG+
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNR------------ 49
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
+ ++ NV + P+ C G A+ LTV P + P P+
Sbjct: 50 KVYELSNVQEDSQPM---CYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGK 102
Query: 310 EARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRCQV G +V RGE+E+ P V + + + ++C +
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+P F P P
Sbjct: 163 LDLRPQGLELFENTSAPYQLQT-FVLPATPPQLVSPRV 199
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 63.0 bits (152), Expect = 1e-10
Identities = 26/200 (13%), Positives = 45/200 (22%), Gaps = 18/200 (9%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + P G L C G P T+V + + E +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE--VTT 144
Query: 64 AIQDSRKTDDGRYQCVVKNVAGT-------RESTDAVLRVLVKPYIIRG-PKDTTVSASS 115
+ R + C + S L+ V P + +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 116 IIVFECSVGGD---AVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCE 169
CS+ G + VH + +++ E C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 170 AENAVGKISASATLTVQMAP 189
T+T+ P
Sbjct: 265 VILGNQSQETLQTVTIYSFP 284
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-20
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S +T E PS P+ +L++T++L++WK P NG I+ Y++ +
Sbjct: 2 SSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTMD 59
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A + + NL YSV + A G GP S + +G P
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGP 118
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 9e-20
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S + + + + PS P +L+++ + + W+ ++ +YQI
Sbjct: 2 SSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWAA 57
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
A + V++ + L NL +Y + + A N AG GP S
Sbjct: 58 HDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 1e-19
Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 22/179 (12%)
Query: 17 VAAGDTALLEC-GPPRGHPEPTLVWKKNGHPI--------DFENSKRLRLVDGTNLAIQD 67
A G L + W++ + F S ++ +L I++
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+ D G Y V + GTR A+ LR+L K S C V
Sbjct: 68 LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-----SKPMIYWECSNATLTCEVLEG 122
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ + + + R +S + C+A N V + S +
Sbjct: 123 TDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-11
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 34/176 (19%)
Query: 125 GDAVLTVHWKR-----------LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
D + V W+R + + +L + L++ ++ +D+G Y +
Sbjct: 24 TDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 83
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
G + L +++ +V + +A C +
Sbjct: 84 NGTRILNKALDLRILEMVSKPMIYWE---CSNATLTCEVLEGTDVELKLYQGKE------ 134
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ S + Q + A C VN + V+ P+
Sbjct: 135 ---------HLRSLRQKTMSYQWTNLRA---PFKCKAVNRVSQE--SEMEVVNCPE 176
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 322 SVQWWRGEREVGS----------GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
V+W RG V + +G L + ++T++DSG Y V S +G+
Sbjct: 29 EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRI 88
Query: 372 WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLAWSRNNQIGSSS 428
+ +L +P Y + TL + G + L + + S
Sbjct: 89 LNKALDLRILE-------MVSKPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLRSL 139
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 34/187 (18%)
Query: 202 VGRDAVFLCGI--EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LKIQNVS 258
+G W + +++ N LKI+N++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 259 R------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEAR 312
R + G+ + +L + + P+I + +N TL
Sbjct: 70 RDDSGTYN-------VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATL------- 115
Query: 313 LRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
C+V + ++ ++G+ + S + ++ + C +
Sbjct: 116 -TCEVLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVNRVSQE 166
Query: 371 SWSASLR 377
S +
Sbjct: 167 SEMEVVN 173
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-19
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT- 61
P V+ G+ A L C G P PT+ W K G + D S R+ L G+
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+ + D+G Y CV +N G S DA L V +
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 1e-18
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RM 145
++ + P I+ P D VS C G T+ W + G + D
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 146 SVLPSRSLQLSDV-----RLEDAGEYVCEAENAVGKI-SASATLTVQMAP 189
+LPS SL + D G YVC A N +G+ S A+L V A
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-12
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGP-----RVNVTGDGS 345
PP I+ P++ + A L C+ G +++W++G V + + GS
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 346 LVLTDV-----TKEDSGEYTCVVKSPHGSA-SWSASLRFESP 381
L + ++ D G Y CV ++ G A S ASL +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 8e-10
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 181 ATLT-VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+L P + E PSDL + G A C EG P P+ W G R D +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPL----IILCLGVNAAGSDLAR-ASLTVSGP 288
+ G L + + +C+ N G ++ ASL V+
Sbjct: 61 RM--LLPSG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 3e-19
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
PP + P N ++ R+ +V G V W+ R V S + G SL
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+ V D+G Y CV K+ G A+++ L +
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-18
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 62
F P++ + G ++ G P P + W NG + ++ +++ +
Sbjct: 7 RFIQVPENMSIDEGRFCRMDF-KVSGLPAPDVSWYLNGRTV--QSDDLHKMIVSEKGLHS 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L + R +D G Y CV KN AG T L VL K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFT-VQLDVLAK 99
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-18
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS--RSLQ 154
P I+ P++ ++ + V G V W G + D +M V SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
VR DAG Y C A+N G+ + + L V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-10
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P + P ++ ++ GR + G P P W L G + D I +E
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT--VQSDDLHKMIVSE---K 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
G++ L + V + A C+ N AG L V +
Sbjct: 60 GLHSLIFEVVRASDAG--AYACVAKNRAGEATFTVQLDVLAKE 100
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-19
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 89 STDAVLRVLVK-PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---R 144
S+ + V + +II +D V S F C + VHW + + +
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE 61
Query: 145 MSVLP--SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPS 196
+ P L L + L+D+G EA G ASA L V P R PS
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPS 113
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-16
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRV 338
+S V G I+ + + S A RC++ V W+ + + +
Sbjct: 5 SSGLVQGR----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 339 NVT----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
+ G L L + +DSG G SA+LR P++ F R+
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK--PSV-FSRSGPS 113
Query: 395 S 395
S
Sbjct: 114 S 114
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
+ V G +A C + W + P+ + G L
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII--RGP 106
++ D G + A LRV KP + GP
Sbjct: 74 LRQLALKDSGTIYFEAGDQ-----RASAALRVTEKPSVFSRSGP 112
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 9e-10
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 178 SASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
S+ ++ VQ + E D+ ++ G A F C I + W L+ ++ +
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKT--PLHANEL 59
Query: 237 VDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP----N 291
+ + G ++L ++ ++ + I AG A A+L V+ +
Sbjct: 60 N---EIDAQPGGYHVLTLRQLALKDSG--TIYF----EAGDQRASAALRVTEKPSVFSRS 110
Query: 292 PPP 294
P
Sbjct: 111 GPS 113
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 3e-19
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--L 63
+++ + V A +T C P G+P PT+ W KNG E+ V + L
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 67
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
++ +D G Y CVV+N G+ T L V+
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVV 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-17
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 100 PYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR--- 151
PY + V A++ + F C GG+ + T+ W + G E R+ R
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 152 -SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
SL + V D G Y C EN G I+ + L V
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-15
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 300 PANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNV----TGDGSLVLTDVTK 353
+P + + RC G +++W + +E R+ SL++ V
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 354 EDSGEYTCVVKSPHGSASWSASLR 377
D G YTCVV++ +GS + + L
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-06
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 22/110 (20%)
Query: 186 QMAP----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ AP + + F C G+P P+ W+ G R+ +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK--EFKQEHRIGGYK 59
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ L +++V T C+ N GS L V
Sbjct: 60 VR---NQHWSLIMESVVPSDKGNYT-------CVVENEYGSINHTYHLDV 99
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-19
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 10/176 (5%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+T +S+ L W LN+ I G I + V + VTGL
Sbjct: 30 SFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPG 87
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
Y+ + + P+ L +T L + ++ + W PPP
Sbjct: 88 IDYDISVYTVKNGGESTPTTLTQ-QT---AVPPPTDLR-FTNIGPDTMRVTWAPPPSIDL 142
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
+ Y + + + +++S S ++LTNL G Y VS+++
Sbjct: 143 TNFLVRYSPVKNEEDVA---ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 34/237 (14%), Positives = 75/237 (31%), Gaps = 57/237 (24%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PT + V+ T + + L W+ + SS+++GY++ +G+
Sbjct: 23 VPQPTDLSFVDITDSSIGLRWTP---LNSSTIIGYRIT-VV-------AAGEGIPIFEDF 71
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
V ++V TVT L G+ Y V + + G S P+
Sbjct: 72 VDSSVGY--YTVTGLEPGIDYDISVYTVKNGGESTPT----------------------- 106
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYI 577
++ L+ + ++++TW + + +
Sbjct: 107 --------TLTQQTAVPPPTDLR-----------FTNIGPDTMRVTWAPPPSIDLTNFLV 147
Query: 578 YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
+ VA L++ + + ++T L + Y + + + P R
Sbjct: 148 RYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 202
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALIN 691
R E L+ V + +S+ L+W P + I Y+I +V G +
Sbjct: 15 VPRGSHMEVPQPTDLS-FVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFE 69
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
V +S +T L GI Y +S+ G + + P
Sbjct: 70 DFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPT 118
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T PPT N + + + W+ S L + V SP +
Sbjct: 111 QTAVPPPTDLRFTNIGPDTMRVTWAP---PPSIDLTNFLVRY--------SPVKNEEDVA 159
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ ++ + + + +TNL G Y V ++ S P
Sbjct: 160 ELSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPL 197
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 4e-19
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS--RS 152
+P+ ++ P D TV + +C V G + W+ G + D +M V + S
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + V DAG Y C A N G+ S S L V
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-18
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
P L P + T+ R+ C+V G + W + V + G SL
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
++ VT D+G YTC+ + G S+S L + +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-18
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
F P V G ++C G P P L W+ +G P+ +++ ++ + + L
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I+ D G Y C+ N AG + L V K
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKE 104
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
++ + P + P DL ++ G+ C + G P P W L+G + P
Sbjct: 2 SSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP--VRPDSA---H 56
Query: 241 QAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + +G++ L I+ V+ A I C+ N AG + L V+ + P
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAG--IYTCIATNRAGQNSFSLELVVAAKESGPS 108
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-19
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F+V Q V G ++ +G P+P + W +N P+ + +R L
Sbjct: 7 TFKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR-PDQRRFAEEAEGGLCRL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + + D G Y C N G R+ A L V
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCE-ARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 6e-19
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPS---RS 152
P D +V ++ V G+ V W R + D R +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L++ DAG Y C+A N G A L V+
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-17
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR----VNVTGDGSL 346
PP +Q++ + + +V+G + V W R + V R G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ + D+G YTC + +G+ A L
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLE 95
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 9e-13
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
+ P + D + G+D + ++G P P W+ + P R AE
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP--VRPDQR---RFAEEA 57
Query: 246 SDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
G+ L+I R T C VN G+ A L V G
Sbjct: 58 EGGLCRLRILAAERGDAGFYT-------CKAVNEYGARQCEARLEVRG 98
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-19
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLA 64
+ ++ AG T LE G P+PT W + L + T++
Sbjct: 5 ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGA--ALAPELLVDAKSSTTSIF 61
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+++ D G Y+ VKN G E+ V+V+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAI---FEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-17
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSL 153
+KP I+ + + A E G T W S + V + S+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ D+G Y + +N +G+ A + VQ
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLV 347
P IL + L G + W G+ P + V S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ DSG Y VK+ G +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 19/105 (18%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P + ++++ G G+P P+ W + + + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDS--GAALAPEL-LVD---AK 54
Query: 247 DGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ + R N G D A + V
Sbjct: 55 SSTTSIFFPSAKRADSGNYK-------LKVKNELGEDEAIFEVIV 92
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-19
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINMTVSAS 697
P P + ++ T ++LKW P +N I+ + I N+S V S
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ +L Y + + N G +S
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-06
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ + ++ T + L W + + YIY R D + G +
Sbjct: 9 HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHM 68
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ L + Y+ + F + + SN+ T
Sbjct: 69 IGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
P + + L W+ +N + G+ + Y RP S + S
Sbjct: 5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTP--IQGFYI--YYRPTDSDNDS------D 54
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ R + +L +Y ++ N G S S+ ++
Sbjct: 55 YKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 6e-19
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 94 LRVLVKPYII--RGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS 150
L KP ++ + +V + + F C+ T+ W RL + R ++ +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFN 61
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + +V+ DAG YVC N +ATL VQ
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-15
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ +SQ V G C P TLVW + + R +G L I++ +
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PSRAMDFNGI-LTIRNVQP 71
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+D G Y C N+ + T A L V V
Sbjct: 72 SDAGTYVCTGSNMFAMDQGT-ATLHVQV 98
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 7e-14
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V + +Q++ ++ C + + ++ W R G P + +G L +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+V D+G Y C + +A+L
Sbjct: 67 RNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 181 ATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRV 237
A L P + E + G D F+C + SP + W N L P +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAM 58
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
D +G+ L I+NV + A + C G N D A+L V
Sbjct: 59 D-------FNGI--LTIRNVQPSDAGTYV-CTGSNMFAMDQGTATLHV 96
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 7e-19
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 287 GP-DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD 343
GP + P I + +P R V+ V+W+ E+ +++ T
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 344 G---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+L + D +DSG Y V + G AS A+L
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 150
+ P I + V F +V V W G + E ++ +
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 151 R---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+L++ D +D+G Y N G+ S ATL V
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-17
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
++ +S RV G + P + W NG + + S ++ + + L
Sbjct: 10 RITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGVEL--QESSKIHYTNTSGVLTL 66
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
I D D G Y+ V N G A L V Y
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDY-ATLDVTGGDY 103
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-12
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T+ AP + R R+ G++ F+ ++ P W G + ++
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV--ELQESSKI----- 55
Query: 243 EITSD-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
T+ G+ L+I + + + N G A+L V+G D
Sbjct: 56 HYTNTSGVLTLEILDCHTDDSG--TYRAVCTNYKGEASDYATLDVTGGD 102
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 7e-19
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V+P SQ++ G T +L+C G P P W KN P+ E K +
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYM--------VP 55
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
G Y C V N +++S + +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-18
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
K I P + S +V +C G + W + + + + + V
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYV 57
Query: 159 RLEDAGEYVCEAENAVGKISASATLTV 185
LE G Y C N + +
Sbjct: 58 DLEHQGTYWCHVYNDRDSQDSKKVEII 84
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-14
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
I P +Q L S L+C G QW++ E + + ++
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------KLYMVPY 56
Query: 351 VTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTN 383
V E G Y C V + S S + + N
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 16/97 (16%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ P+ +L G V C GSP P W +T +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL---------------PLTHET 48
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
L + V C N S ++ +
Sbjct: 49 KKLYMVPYVDLEHQG-TYWCHVYNDRDSQDSKKVEII 84
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 1e-18
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 17/118 (14%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----- 143
S+ V R ++ P + C G V + W G +
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLW 70
Query: 144 ------------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ ++ + + ED G Y C A N + + V+
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 4e-16
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 18/108 (16%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGP--------- 336
P + + P +Q + L C+ G +QWW +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 337 -------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ ++ + + +ED+G Y C + + + R
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 3e-14
Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 20/119 (16%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------------- 53
F P SQ+ G + L C G P P + W G + S+
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEA-VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 54 -RLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTV 111
+ ++I + D G Y+C N T RV +R V
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLT-RAPRVK----WVRAQAVVLV 135
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-08
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN-----RSLIY 232
S+ + P + VG C GSP P W EG S ++
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLW 70
Query: 233 PGDRVDNIQAEIT--SDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
G R+D + T + + I + C N + + V
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTG--TYECRASNDPDRNHLTRAPRVKWVR 128
Query: 290 PNPPPVIL 297
++L
Sbjct: 129 AQAVVLVL 136
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 1e-18
Identities = 33/216 (15%), Positives = 56/216 (25%), Gaps = 34/216 (15%)
Query: 8 FRVQ--PKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPI-------------D 48
F V V G +EC + W+ I
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 49 FENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+R RL+ L I D + D G Y+C++ G + ++V
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNK 119
Query: 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDV--- 158
I +S C G V W + + R +L +V
Sbjct: 120 INQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTST 179
Query: 159 ---RLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191
+ C + + +A L + P+
Sbjct: 180 LRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 7e-16
Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 33/221 (14%)
Query: 103 IRGPKDT-TVSASSIIVFECSVGGDAV-----LTVHWKRLGSA--------------MPE 142
+ PKD V S + EC + L V+W+
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 143 --DRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRER 194
R +L + +LQ++DV+L+DAG Y C G T+ V +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254
+ V + C EG P W ++ L ++ + E + + L+I
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
+ I C + A L + PP
Sbjct: 183 NTTTNE----IFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 2e-14
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 32/201 (15%)
Query: 201 EVGRDAVFLCGIEGSPPPST-----FWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKI 254
E G + C +W +E + + G+ +Q LLK
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 255 QNVSRTAAPLII-----------LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ 303
Q AA L I C+ ++ G+D R ++ V+ P
Sbjct: 74 QLSLGNAA-LQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQ-----RILV 126
Query: 304 TLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVT------KED 355
P+ SE L CQ G + V W + +V SG L +VT
Sbjct: 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTT 186
Query: 356 SGEYTCVVKSPHGSASWSASL 376
+ + C + + +A L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 84.6 bits (208), Expect = 1e-18
Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 39/196 (19%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
+ LL C + W K+G I F D + + K G YQC
Sbjct: 18 DGSVLLTCDAE----AKNITWFKDGKMIGFLTE------DKKKWNLGSNAKDPRGMYQCK 67
Query: 80 VKNVAGTRESTDAVLRV-----LVKPYIIRGPKDTTVSASSIIV----------FECSVG 124
+ KD S ++ S+
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 125 GDAVL---------TVHWKRLGSAMPED---RMSVLPSRSLQLSDV-RLEDAGEYVCEAE 171
G V+ + W+ + D + L L + LE +G YVC
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 172 NAVGKI-SASATLTVQ 186
+ + + L +
Sbjct: 188 GSKPEDANFYLYLRAR 203
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 4e-17
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 5 REEFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + +V+ +G T +L C +P ++W+ N I + + D +L
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 64 AIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
++++ + + G Y C + + LR V
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 204
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 8e-09
Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 25/184 (13%)
Query: 205 DAVFL-CGIEGSPPPSTFWMLEGNRSLIYPGDRVD-NIQAEITSD-GM----------NL 251
+V L C + + W +G D+ N+ + GM
Sbjct: 19 GSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Query: 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE- 310
L++ +A + A D A+ + + +
Sbjct: 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKD-----GSDGNEEMGGITQTPYKVSISGTT 130
Query: 311 ARLRCQVRGEGSVQWWRGEREVGSGPRVNVT--GDGSLVLTDVTK-EDSGEYTCVVKSPH 367
L C + W ++ +G + L L + ++ E SG Y C +
Sbjct: 131 VILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 368 GSAS 371
+
Sbjct: 191 PEDA 194
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 3e-05
Identities = 23/186 (12%), Positives = 43/186 (23%), Gaps = 38/186 (20%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
++ C + W + G + + L + G Y C+ K
Sbjct: 21 VLLTCDA---EAKNITWFKDGKMIGFLTED---KKKWNLGSNAKDPRGMYQCKGSQNKSK 74
Query: 177 ------ISASATLTVQMAPIVRERPSDLRLEVGRDAV----------FLCGIEGS----- 215
SA + A + D + G D + I G+
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 216 ----PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271
P W I + + + L ++ S +C
Sbjct: 135 CPQYPGSEILWQHNDK--NIGGDEDD-----KNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 272 NAAGSD 277
+ D
Sbjct: 188 GSKPED 193
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-18
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P +PT+ + + + W G + ++VE W+
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYKK----------LKKVGDWIL 66
Query: 458 VATNVP--SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
+ +P + +T L G++Y F VRALN G S PS S V+ G
Sbjct: 67 ATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 10/122 (8%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--- 679
S + P P ++ + TSV + W P I+++++
Sbjct: 2 SSGSSGSQPDHGRLSPPEAPDRPTIST---ASETSVYVTWIPRG--NGGFPIQSFRVEYK 56
Query: 680 IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739
+ + L + S ++ +T L GI Y + A N G S P+ + SG
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Query: 740 EP 741
P
Sbjct: 117 GP 118
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-18
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
+ V ++ C + D V +++W R G + E + + +++ D
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 160 LEDAGEYVCEAENAVGKISASATLTVQMAP 189
D+G Y C + G + ++ V A
Sbjct: 63 PADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-17
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V+ +S V GD L C R ++ W ++G + S R R+ + +Q
Sbjct: 5 SSGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGVQL--AESNRTRITGEE-VEVQ 59
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
DS D G Y CV + +G S V V + GP
Sbjct: 60 DSVPADSGLYACVTSSPSG---SDTTYFSVNVSDALPSGP 96
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-16
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
+ + +LRC++R + S+ W R ++ R +TG + + D
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITG-EEVEVQDS 61
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
DSG Y CV SP GS + S+
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVN 87
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ + G C + W+ +G + + +R IT +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQ--LAESNRT-----RITGE 54
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+++Q+ + L C+ + +GSD S+ VS P+ P
Sbjct: 55 E---VEVQDSVPADSGLYA-CVTSSPSGSDTTYFSVNVSDALPSGPS 97
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-18
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 390 RAPEPSTYPGPPT-KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ T P PP+ + L + + +T+ W + S+ Y+++ ++ S
Sbjct: 8 EGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISL 64
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ +W+ V N+ TV L G Y F+V+A+N G P +
Sbjct: 65 YNSVDSWMIV-PNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKT 115
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 4e-18
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
F ++ K ++ G C G+P+P + W K+G I S + +
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQIS-PKSDHYTIQRDLDGTCS 67
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
L S DDG Y + N G T L V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVNS 105
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------S 152
P+ K + + F C V G+ ++W + G + R S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + L+D G Y A N G+IS + L VQ
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-17
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRV-----NVTGDGS 345
P + + C+V G + + W++ +++ ++ G S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L T T +D G YT + +P G S + L ++ +
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + ++ G F C + G+P P +W +G + I P IQ + D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ--ISPKSDHYTIQRD--LD 63
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G L + + N G L V + P
Sbjct: 64 GTCSLHTTASTLDDDG--NYTIMAANPQGRISCTGRLMVQAVNSGPS 108
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-18
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
P + + A L+C++ V+W +G + G R ++ DG L +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
D++ D+GEY+C+ G SA+L + F PS+
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPAR---FTEGSGPSS 107
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F K++ + G TA L+C + WKK + + R L DGT L
Sbjct: 10 RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPETL--RDGGRYSLKQDGTRCEL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTT 110
I D D G Y C+ E T A L V P G ++
Sbjct: 65 QIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALPARFTEGSGPSS 107
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS---RSLQL 155
+ K S + +C + A V WK+ + + R S+ LQ+
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196
D+ + DAGEY C G+ SATLTV+ P S
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGS 103
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ G A C E S W + G R + D
Sbjct: 8 PARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPE--TLRDGGRY-----SLKQD 58
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP 290
G L+I ++S A C+ G + A+LTV
Sbjct: 59 GTRCELQIHDLSVADAG--EYSCM----CGQERTSATLTVRALPA 97
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-18
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG---SLVLT 349
IL +QT+ L E L+C++ +W + V R+ V G LV+
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIA 66
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ ED G+Y + + + A + S
Sbjct: 67 NALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 7e-16
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVL---PSRSLQL 155
I+ D TV+ I +C + + W + G DR+ V+ L +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++ ED G+YV + ++ A + V P
Sbjct: 66 ANALTEDEGDYVFAPDA--YNVTLPAKVHVISGP 97
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-14
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ Q V G L+C W KNG P+ + S RL++V G L
Sbjct: 9 KILTPLTDQTVNLGKEICLKC---EISENIPGKWTKNGLPV--QESDRLKVVQKGRIHKL 63
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I ++ D+G Y T A + V+ P
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVT---LPAKVHVISGP 97
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 15/103 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ +D + +G++ C I + P W G + DR+ ++
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGL--PVQESDRL-----KVVQK 57
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
G L I N + A + A + V
Sbjct: 58 GRIHKLVIANALTEDEG--DYVF--APDAYNVTLPAKVHVISG 96
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 5e-18
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
I P+ TV I F V + +L T+ W K L +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R S + + +Q+ + AG Y CE S S L V +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 7e-15
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRG---EREVGSGPRV 338
G + + + P T+ + + +V+ E +++W++G + +G +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 339 NVTGDG---------SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ + + +G Y C V S S L T
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-11
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNG-HPIDFENSKRLRLVDGTN- 62
F +P+ V G+ PT+ W K + + K L+L +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRK-PTIKWFKGKWMDLASKAGKHLQLKETFER 68
Query: 63 --------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ I ++ G Y+C V + L V
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 113
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSLIYPGDRVDNI 240
+ + E+P ++VG D F+ ++ P+ W L + ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGK--HL 60
Query: 241 QAEITSDGMNL-----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
Q + T + + ++I A C D L V P
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYR-CEVTYKDKFDSCSFDLEVHES-TGTTPN 118
Query: 296 ILFGPAN 302
I GP++
Sbjct: 119 IDSGPSS 125
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 5e-18
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
P I +QT+ S+A R +V G + +W++ ++ R+ L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V+ DVT EDS + G S A L ++
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-17
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQ 154
P I + TV S F V G W + G + DR+ L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ DV ED+ + +A N G+ S+ A L VQ
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-17
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
+ + +SQ V G A G P+P W KNG I E S R+ +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKI--ERSDRIYWYWPEDNVCE 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I+D D N+AG S A L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSH-AFLLV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + ER + G DA F + G P P W G I DR I D
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGV--KIERSDR---IYWYWPED 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ L I++V+ +A I+ +N AG + A L V
Sbjct: 60 NVCELVIRDVTGEDSA--SIMVKAINIAGETSSHAFLLVQA 98
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 9e-18
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 288 PDPNPPPVILF--GPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDG 344
P+P PV F P + + S A + V+W RG ++ + + + +G
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 345 ---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L + +V D G Y + GS+ L
Sbjct: 61 TRHTLTVREVGPADQGSYAVIA----GSSKVKFDL 91
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 6e-15
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F +P+S VAAG A+ E + W++ G I S + L +GT L
Sbjct: 10 AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGSDI--SASNKYGLATEGTRHTL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+++ D G Y + + L+V
Sbjct: 66 TVREVGPADQGSYAVIAGS-----SKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 7e-15
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQ 154
+ P+ V+A S VFE V V W+R GS + ++ + +L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGTRHTLT 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ +V D G Y A G L V
Sbjct: 67 VREVGPADQGSYAVIA----GSSKVKFDLKVI 94
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 9e-05
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
++P + + G AVF E W G S I ++ + ++G
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGG--SDISASNKY-----GLATEG 60
Query: 249 MN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
L ++ V + AGS + L V
Sbjct: 61 TRHTLTVREVGPADQG--SYAVI----AGSSKVKFDLKV 93
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 9e-18
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDGSL 346
P+ P + + + +LRC++R S+ W R ++ R +TG +
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITG-EEV 62
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ D DSG Y CV SP GS + S+
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-17
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
+ + V ++ C + D V +++W R G + E + + +++ D
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 160 LEDAGEYVCEAENAVGKISASATLTV 185
D+G Y C + G + ++ V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 5e-15
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V+ +S V GD L C ++ W ++G + S R R+ + ++D
Sbjct: 12 VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGVQL--VESNRTRITGEE-VEVRD 66
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
S D G Y CV + +G+ ++T + V
Sbjct: 67 SIPADSGLYACVTSSPSGS-DTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 182 TLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
TL Q P V L + G C + S W+ +G + + +R
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQ--LVESNRT--- 55
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
IT + +++++ + L C+ + +GSD S+ VS
Sbjct: 56 --RITGE---EVEVRDSIPADSGLYA-CVTSSPSGSDTTYFSVNVS 95
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 1e-17
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
+ P+D V+ I F V G ++L V W + L D
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
R S + L ++D + G Y CE ++ LTV
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 1e-13
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRGEREVG------------S 334
P + + P + + + +V G V+W++G+ S
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
R + L +TD +G Y C V + + +L
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 6e-11
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKN---------GHPIDFENSKRL 55
F ++P+ V G + G P P + W K G + +S
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKP-PVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65
Query: 56 RLVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I D++ G Y+C V S L V
Sbjct: 66 ASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 7/104 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ RP D + VG F + G+ PP W L + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 245 ---TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + L I + C D + +LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYR-CEVSTKDKFDCSNFNLTV 106
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 1e-17
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 28/185 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSK---------RLRLVDGT 61
+ P P ++WKK + + ENS+ R+ L +
Sbjct: 2 SQQIYGVVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 62 -NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+L I + +D+ Y+ N+ T + VL ++ KP I + T++
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLT-------- 111
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V + + + + R +S + C+A N V + S
Sbjct: 112 CEVLEGTDVELKLYQGKEHLR-------SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 164
Query: 181 ATLTV 185
+
Sbjct: 165 EVVNC 169
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 1e-06
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 30/177 (16%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV---DNIQAEITSDGMNL-LKIQNV 257
V + F P W + ++ + + + D ++ L I N+
Sbjct: 9 VYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67
Query: 258 SRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ 316
+ + N + + L V + P+I + +N TL C+
Sbjct: 68 TSSDEDEYE--MESPNITDT--MKFFLYVL--EMVSKPMIYWECSNATL--------TCE 113
Query: 317 VRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
V + ++ ++G+ + S + ++ + C + S
Sbjct: 114 VLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVNRVSQES 162
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 27/122 (22%)
Query: 322 SVQWWRGEREVGS-------------GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
V W + + +V T GSL + ++T D EY +
Sbjct: 25 EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD 84
Query: 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLAWSRNNQIGS 426
+ + + E + P I + + TL + G + L + +
Sbjct: 85 TMKFFLYV-LEMVSKPMIYW-----------ECSNATLTCEVLEGTDVELKLYQGKEHLR 132
Query: 427 SS 428
S
Sbjct: 133 SL 134
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 379 ESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
S ++ I PE PGPPT + N +TL + G +S+ + VE
Sbjct: 2 SSGSSGTISSGVPPEL---PGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQV 57
Query: 439 RPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+++ + + V +L Y+F +R +N G S PS S
Sbjct: 58 -----GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSR 112
Query: 499 EIV 501
+I
Sbjct: 113 KIQ 115
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--- 679
S + P +++ + SV L+++P G I + +
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNLGISN---IGPRSVTLQFRPGYDG--KTSISRWLVEAQ 56
Query: 680 ---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ G + ++ ++ + +L+ YS + N GT P S+P
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 110
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-17
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGG 683
S + VRT E P V L+ + TS+ + W+ P NG++ Y+I
Sbjct: 2 SSGSSGPQLVRTHEDVPGPVGHLS-FSEILDTSLKVSWQEPG--EKNGILTGYRISWEEY 58
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + + T +T L+A Y++ +AA G G S +++SG P
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS---TISSGVPP 113
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 398 PGPPTKPTLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PGP + L ++W N I L GY++ T T
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGI----LTGYRISWE--------EYNRTNTRV 65
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ VT LT TYT V A+ S G S
Sbjct: 66 THYLPNVTLE--YRVTGLTALTTYTIEVAAMTSKGQGQVSA 104
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 22/190 (11%)
Query: 555 MTSTSVKLTWE--------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
+ ++ WE I Y I PAS S V
Sbjct: 16 CQADKAEIHWEQQGDNRSPI--LHYT----IQFNTSFTPASWDAAYEKVPNTDS-SFVVQ 68
Query: 607 LAHYSRYEFFLVPF--FGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
++ ++ Y F ++ F G+ PS + T P P ++++ W
Sbjct: 69 MSPWANYTFRVIAFNKIGA--SPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWT 126
Query: 664 PPPVGTHNGVIRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721
P P HN Y + + N +++ + ++Y + + A N
Sbjct: 127 PMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 722 AGTGPYSRPA 731
G +
Sbjct: 187 RGESNVAAEE 196
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-13
Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 54/223 (24%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + A+ + W + S +L Y ++ + A+W
Sbjct: 6 PNAPKLTG-ITCQADKAEIHWEQQGD-NRSPILHYTIQF----------NTSFTPASWDA 53
Query: 458 VATNVP-SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
VP + V ++ YTF V A N G S PS SD +
Sbjct: 54 AYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ------------- 100
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY----I 572
+ P + ++ + ++ ++W +
Sbjct: 101 ----PDVPF--------KNPDNVV-----------GQGTEPNNLVISWTPMPEIEHNAPN 137
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
Y+ + P A+ + + ++ + +Y
Sbjct: 138 FHYYVSWKRDIPAAAWENNNI-FDWRQNNIVIADQPTFVKYLI 179
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P N L ++W+ +I ++ Y V + R +P+++ W
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKRDIPAAA---------WE 154
Query: 457 RVA-TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + + + Y V A+N G S +
Sbjct: 155 NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAA 194
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 651 VLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSASTPTLLLTNLSA 708
+ A + W+ + I Y I S +T + + +S
Sbjct: 14 ITCQADKAEIHWEQQG--DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSP 71
Query: 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y+ + A N+ G P S + T P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVP 104
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-17
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 6/179 (3%)
Query: 556 TSTSVKLTWEILNTD---YIEGVYI-YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYS 611
S++ ++ ++ I + + A + GL +
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET 79
Query: 612 RYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN 671
Y L G G+ S +T P+L + + S+ + G
Sbjct: 80 TYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDG--G 137
Query: 672 GVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
IR Y + ++ + + + + ++L +L Y V + A N+ G +
Sbjct: 138 SPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF 196
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 9e-12
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 394 PSTYPGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
P P+ P++ V ++ + + G +L Y+ E + +
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVW 54
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ W I+T+ L TY + ALN GL S S
Sbjct: 55 HSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
+P P P + + N + + + + G S + Y V R L S
Sbjct: 105 QPVREPSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIRHYLVRY--RALSS--------- 152
Query: 453 ATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
W S + + +L Y V A N G S +
Sbjct: 153 -EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-17
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P PP + TA +TL W S + Y ++ T
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYR-----------AAGTE 49
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ V + ++ L+ Y F V A+NS G PS
Sbjct: 50 GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVR 94
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+P +T+ ATSV L W ++ + Y I +T
Sbjct: 9 KPPIDLVVTE---TTATSVTLTWDSG----NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ LS Y+ + A N G GP S P
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGP 103
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ K+ V G++ EC +W G + +S R + G L
Sbjct: 10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--GSSSRFQATRQGRKYIL 67
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105
++++ +D G V+ + A L V + G
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSK-----ASLIVRERSGPSSG 104
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 5e-16
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDG---S 345
I + C + E W G + VGS R T G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
LV+ + D+GE V + ASL + P+ G
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSSG 104
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQ 154
I + K V FEC + A W G + R L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ + DAGE V ++ A+L V+
Sbjct: 69 VREAAPSDAGEVVFSVRGL----TSKASLIVRERS 99
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ +R + + G F C + S W + G + R + T
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK--TVGSSSRF-----QATRQ 61
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G +L ++ + + A ++ + ++ASL V P
Sbjct: 62 GRKYILVVREAAPSDAG--EVVF----SVRGLTSKASLIVRER-SGPS 102
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 2e-17
Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 20/192 (10%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
P S + W +I + R + T+ G + + + GL
Sbjct: 9 TETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI--PGHLNSYTIKGLKPG 66
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVL--------------LNAT 656
YE L+ + + T P +T + A+
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITAS 126
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSL 716
S ++ W T +G Y++ G + + ++ ++ + +L G +Y V++
Sbjct: 127 SFVVSWVSAS-DTVSGFRVEYELSEEGDE---PQYLDLPSTATSVNIPDLLPGRKYIVNV 182
Query: 717 AATNRAGTGPYS 728
+ G
Sbjct: 183 YQISEDGEQSLI 194
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 7e-09
Identities = 28/237 (11%), Positives = 57/237 (24%), Gaps = 39/237 (16%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
T N + W N S + Y + P +
Sbjct: 4 VEVFITETPSQPNSHPIQW---NAPQPSHISKYILRW--------RPKNSVGRWKEATIP 52
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIF 519
++ S T+ L G+ Y + ++ +G + T G F
Sbjct: 53 GHLNS--YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPF 110
Query: 520 SENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYS 579
S V +T++S ++W + D + G +
Sbjct: 111 SPLVATS-----------------------ESVTEITASSFVVSWVSAS-DTVSGFRVEY 146
Query: 580 RGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ L + A+ + L +Y + + + T
Sbjct: 147 ELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 9e-07
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
S ++W P + I ++ G T+ + + L G+ Y
Sbjct: 15 PNSHPIQWNAPQPSHISKYILRWRPKNSVGR---WKEATIPGHLNSYTIKGLKPGVVYEG 71
Query: 715 SLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLT 767
L + + G +R + ++ ++ +T++T
Sbjct: 72 QLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEIT 124
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-06
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 325 WWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
WR + VG + G S + + E + +G + + T+
Sbjct: 36 RWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTS 95
Query: 384 PNIGFFRAPEPSTYPGP--PTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
+ +T P T ++ TA+ ++W S ++ G++VE
Sbjct: 96 TPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW----VSASDTVSGFRVEY----- 146
Query: 442 PSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
S + ++ + + S + + +L G Y V ++ G +
Sbjct: 147 ---ELSEEGDEPQYLDLPSTATS--VNIPDLLPGRKYIVNVYQISEDGEQSLI 194
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINM 692
+ P P +T +N T+++LKW P +N I + I N+S
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
V +++L Y + + N G +S
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 8e-06
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN-NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P + L W ++ + G+ + Y RP S + S +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI--YYRPTDSDNDS------DYK 60
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ ++++L +Y ++ N G S S+ ++
Sbjct: 61 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 104
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEG------VYIYSRGLDPPASVAMLTVLHAGEASG 601
+T + T++ L W + +Y D + V G+
Sbjct: 13 YITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV--EGDRYW 70
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
++ L + Y+ + F + + SN+ T
Sbjct: 71 HSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPS---RSLQ 154
+ +++ D TV A+ VF+C V + V T W + G + P R+++ L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+ DVR ED G+Y + +S SA L +
Sbjct: 67 IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIKVSG 102
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
+L A+ T+ +A +C+V E + +W++ EV R+ ++ G LV+
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 349 TDVTKEDSGEYTCVVKSPHGSAS 371
DV ED G+YT V S S
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLS 90
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-14
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
E V A + A+ +C + T W KNG + SKR+ + G L
Sbjct: 10 EVLQDIADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGVEV--RPSKRITISHVGRFHKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
I D R D+G Y V A S A L L
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYAL---SLSAKLNFLEIKVS 101
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
V + +DL ++ AVF C + W G + P R+
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVE--VRPSKRI-----T 55
Query: 244 ITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
I+ G L I +V + A S A L + P
Sbjct: 56 ISHVGRFHKLVIDDVRPEDEG--DYTFVPDGYALS--LSAKLNFLEIKVSGPS 104
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-17
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ + PS V + TSV L W+ P NG+I Y+I + T
Sbjct: 4 GSSGQAAPSQVVVIR-QERAGQTSVSLLWQEPE--QPNGIILEYEIKYYEKDKEMQSYST 60
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A T ++ L G RY + A AG G +S A+ T P
Sbjct: 61 LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS-QAMEVETGKPSG 107
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P ++L W N I L Y+++ Y D
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGII-----LEYEIKYYE---------KDKEMQ 56
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
++ + TV+ L G Y F VRA S G S
Sbjct: 57 SYSTLKAVTTR--ATVSGLKPGTRYVFQVRARTSAGCGRFSQ 96
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 4e-17
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 330 REVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
RE V + S + + + S + + ++ +G + + +
Sbjct: 45 RESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER-- 102
Query: 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSP 446
P PP K TL++ T N ++L+W + G S +LGY VEM
Sbjct: 103 -----------PLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEM--------QT 143
Query: 447 SGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
G W AT V T+T L G Y+F V A N G+S P LS ++ +
Sbjct: 144 KGSD---KWATCAT-VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-16
Identities = 43/228 (18%), Positives = 66/228 (28%), Gaps = 59/228 (25%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
A + PGPP + T +TL W G S + Y VE ++
Sbjct: 2 AMDT---PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKR-----------ES 47
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGI 510
+ VATN V L G +Y F V A N +G+ P+ ++ +
Sbjct: 48 TRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER----- 102
Query: 511 FSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTD 570
P + + +T SV L+WE D
Sbjct: 103 -------------PL---------PPGKIT-----------LMDVTRNSVSLSWEKPEHD 129
Query: 571 Y---IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
I G + + + + +TGL Y F
Sbjct: 130 GGSRILGYIVEMQ----TKGSDKWATCATVKVTEATITGLIQGEEYSF 173
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 33/195 (16%)
Query: 551 EVKPMTSTSVKLTWE---------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG 601
+VK +T TSV LTW+ I +YI + R A TV +
Sbjct: 13 KVKEVTKTSVTLTWDPPLLDGGSKI--KNYI----VEKR---ESTRKAYSTVATNCHKTS 63
Query: 602 FLVTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATS 657
+ V L Y F ++ +G G P+ P G L D + S
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGI--GLPAETAESVKASERPLPPGKITLMD---VTRNS 118
Query: 658 VLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715
V L W+ P I Y + G + A + +T L G YS
Sbjct: 119 VSLSWEKPE-HDGGSRILGYIVEMQTKGSDKWATCA---TVKVTEATITGLIQGEEYSFR 174
Query: 716 LAATNRAGTGPYSRP 730
++A N G +
Sbjct: 175 VSAQNEKGISDPRQL 189
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
TSV L W PP + I+ Y + A + + + + L G Y
Sbjct: 19 KTSVTLTWDPP-LLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYF 77
Query: 715 SLAATNRAGTGPYSRPA 731
+ A N G G + A
Sbjct: 78 RVLAENEYGIGLPAETA 94
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 5e-17
Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPST-FWMLEGNRSLIYP 233
G +S TLTV PI+ G C I +PPP W + N
Sbjct: 1 GSSGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
R ++ L I N+ R I C N+ GSD L G + + P
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119
Query: 294 P 294
Sbjct: 120 S 120
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 3e-12
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAM---PEDR 144
+ L V P II + +C + + W + + R
Sbjct: 4 GSSGTLTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62
Query: 145 MSVLPSR-------SLQLSDVRLED-AGEYVCEAENAVGKISASATLTVQMAPI 190
+V +L +S++ D Y C A N+ G + L Q + +
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-11
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGERE 331
GS + +LTV+GP P+I Q + +++C +R + W E
Sbjct: 1 GSSGSSGTLTVNGP-----PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54
Query: 332 VGSGPRVNVTGD---------GSLVLTDVTKED-SGEYTCVVKSPHGSASWSASLRFESP 381
+ SG T + +L ++++ + D Y C + GS + L+ +
Sbjct: 55 LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
Query: 382 TNP 384
Sbjct: 115 EMS 117
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-10
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTN------- 62
++Q G+ ++C R P P + W + ++ S R + +
Sbjct: 19 STQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 63 LAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
L I + + D Y C N G S ++R+ + + GP
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFG---SDTEIIRLKEQGSEMSGP 119
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-17
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
++ G+ L P +G P P +VW K G P+D T ++ + ++
Sbjct: 31 RQTYIRKVGEQLNLVV-PFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARS 89
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
D G Y+ V+ ++ +RV+ K
Sbjct: 90 DSGEYELSVQIENMK-DTATIRIRVVEKA 117
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 3e-13
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 6/114 (5%)
Query: 82 NVAGTRESTDAVLRVLVKPYII---RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS 138
+GT + + P I + + G V W + G+
Sbjct: 4 GSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGA 63
Query: 139 AMPEDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ R+ V S + D+GEY + K +A+ + V
Sbjct: 64 PLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPAN-QTLPLR--SEARLRCQVRGE--GSVQ 324
++G+ + V+ + PP I QT + + L +G+ V
Sbjct: 2 SSGSSGT----LAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVV 57
Query: 325 WWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
W +G + + RV+V D + + DSGEY V+ + + + +R
Sbjct: 58 WTKGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 24/126 (19%)
Query: 170 AENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
+ + G ++ T+ P + R +VG + +G P P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLA 279
G L RV +++ TSD + ++ +R D A
Sbjct: 62 G-APL--DTSRV-HVR---TSDFDTVFFVRQAARSDSGEYE-------LSVQIENMKDTA 107
Query: 280 RASLTV 285
+ V
Sbjct: 108 TIRIRV 113
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 394 PSTYPGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S PGP P L + A + L W G S + Y VEM
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMS-----------PIEK 53
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
V TV++L G TY+F +RA N G S D G+
Sbjct: 54 DEPREVYQ-GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P P+L A + L+W PP V I Y + + + +
Sbjct: 11 PCLPPRLQGRP--KAKEIQLRWGPPLV-DGGSPISCYSVEMSPIEKDEPREVYQGSEV-E 66
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++L G YS L A N+ G GP+S
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 7e-17
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDG---SLV 347
++ + + C++ V W+ G R++ + + +T + L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ D+TK D G Y C V + +G S A L +
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-15
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED---RMSVLPSR-SLQLS 156
+ + + C + D V W + ++ L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
D+ D G Y C+ N G+ S+ A L V+
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLV--DGT-NLAIQ 66
Q G C + + T V W + ENS++ + DG L ++
Sbjct: 7 QIMHAVGEEGGHVKYVC-KIENYDQSTQVTWYFGVRQL--ENSEKYEITYEDGVAILYVK 63
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D K DDG Y+C V N G S A L V
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSY-AELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITS 246
+V + E G ++C IE + W + ++ EIT
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVR--QLENSEKY-----EITY 53
Query: 247 D-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+ G+ +L ++++++ C VN G D + A L V G
Sbjct: 54 EDGVAILYVKDITKLDDG--TYRCKVVNDYGEDSSYAELFVKGV 95
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 8e-17
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGS-VQWWRGEREVGSGPRVNVTGDG---SLV 347
P I+ +Q + + LRC++ G+ V W + + + + +V +G LV
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSAS 371
+ + +D+GEYTC V++ +AS
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTAS 90
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-14
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPS---RSLQL 155
II+ +D V+ + C + VHW + A + V+ L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L+DAGEY CE E + +A+L V+
Sbjct: 68 RGASLKDAGEYTCEVEASKS----TASLHVEEKA 97
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-13
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN 62
+ Q VA G+ L C + W K+ I S++ +V +GT
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAG-----TPVHWLKDRKAI--RKSQKYDVVCEGTM 62
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L I+ + D G Y C V+ T A L V K
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKST-----ASLHVEEKA 97
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ + D + G D C + + P W+ + I + ++ +G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTPVH-WLKDR--KAIRKSQKY-----DVVCEG 60
Query: 249 -MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
M +L I+ S A C + + ASL V + P
Sbjct: 61 TMAMLVIRGASLKDAG--EYTCEVEASKST----ASLHVEEK-ASGPS 101
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 9e-17
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-VQWWRGEREVGSGPRVNVTGDG-- 344
+ P + + A LRC + + V+W G + G + ++ +G
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAM 62
Query: 345 -SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
LV+ ++ +DSG Y+C G + SA+L P+ P
Sbjct: 63 LELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPS---RSLQL 155
KD V C + A V W + P D+ S+ L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++R +D+G Y C G + SATLTV P
Sbjct: 68 RNLRPQDSGRYSCSF----GDQTTSATLTVTALP 97
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN 62
F+ K V G A L C + W + + + L +G
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVA-----APVKWCYGNNVL--RPGDKYSLRQEGAM 62
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L +++ R D GRY C G + ++ A L V P
Sbjct: 63 LELVVRNLRPQDSGRYSC----SFGDQTTS-ATLTVTALP 97
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+E DL + G A C + P W N ++ PGD+ + +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNN--VLRPGDKY-----SLRQE 59
Query: 248 GMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G L L ++N+ + C + G A+LTV+ P+ P
Sbjct: 60 GAMLELVVRNLRPQDSG--RYSC----SFGDQTTSATLTVTAL-PSGP 100
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-16
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSR--GLDPP 585
G S R+ ++ L G L+ L +T T+V++TW + +I+G + R
Sbjct: 4 GSSGRQVQKEL---GDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 60
Query: 586 ASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
S ++ L YE + P+F G S + VRT E
Sbjct: 61 TSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII-----VGGGNNSALINMTVSAST 698
+ +L +PV+L T+V + W I+ Y+++ +S +
Sbjct: 18 LVRLHNPVVLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE 74
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT--SGP 739
+ +L NL G+ Y + + G S + T SGP
Sbjct: 75 RSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGP 117
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 403 KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV 462
P ++ T + + W+ + Q + GY+V MY R SG AT++W + V
Sbjct: 23 NPVVLTPTT--VQVTWTVDRQ--PQFIQGYRV-MY-RQT-----SGLQATSSWQNLDAKV 71
Query: 463 PSPI-LTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
P+ + NL G+TY VR + S
Sbjct: 72 PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE 105
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-08
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 35/164 (21%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSG------ 335
TV+ P T+ + S L C ++ R +
Sbjct: 4 TVTAP-----------KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS 52
Query: 336 PRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389
R + G + V DSG+Y C+V +++ ++ +
Sbjct: 53 ERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKAS-------Y 105
Query: 390 RAPEPSTYPGPPTKPTLVNQTANGL---TLAWSRNNQIGSSSLL 430
+ P T + A G ++W + ++S +
Sbjct: 106 MRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHI 149
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 3e-16
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 15/187 (8%)
Query: 555 MTSTSVKLTWEI---LNTDYIEGVYIYSRGLDPPAS--------VAMLTVLHAGEASGFL 603
V+L W + P + V H +
Sbjct: 344 GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVT 403
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
V+ L + Y F + G S ++ P + TS+ + W
Sbjct: 404 VSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVS-INQTEPPKVRLEGRSTTSLSVSWS 462
Query: 664 PPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723
PP + Y++ +S N+ + ++ L +L+ Y V + A + G
Sbjct: 463 IPP--PQQSRVWKYEVTYRKKGDSNSYNVRRTEGF-SVTLDDLAPDTTYLVQVQALTQEG 519
Query: 724 TGPYSRP 730
G S+
Sbjct: 520 QGAGSKV 526
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 4e-14
Identities = 63/376 (16%), Positives = 102/376 (27%), Gaps = 60/376 (15%)
Query: 277 DLARASLTVSGPDPNPPPVILFG--PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGS 334
LA T++G D + P E R+ C V GE V G+ +
Sbjct: 212 GLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVP--IGQCLCQA 269
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE- 393
G + K ++ E C+ H S + + GFFRAP+
Sbjct: 270 GYEKVEDACQA-CSPGFFKFEASESPCLECPEHTLPSPEGA----TSCECEEGFFRAPQD 324
Query: 394 ----PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
P T P + L W+ G + Y V S
Sbjct: 325 PASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPC 384
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEG 509
A+ + + +TV++L + YTF V A N S
Sbjct: 385 EASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSF------------ 432
Query: 510 IFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNT 569
R + ++ ++TS+ ++W I
Sbjct: 433 --------------------------RTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP 466
Query: 570 D--YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627
+ + R S + E + LA + Y + G
Sbjct: 467 QQSRVWKYEVTYRKKGDSNSYNVRRT----EGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 628 PSNLRAVRTLECEPSG 643
S + +TL P G
Sbjct: 523 GSKVHEFQTL--SPEG 536
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 5e-14
Identities = 42/321 (13%), Positives = 82/321 (25%), Gaps = 52/321 (16%)
Query: 195 PSDLRLEVGRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252
+ G + C ++G P G + + + L
Sbjct: 237 DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCL 296
Query: 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA- 311
+ + + C + P+ P + + LR
Sbjct: 297 ECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPP 356
Query: 312 -----------RLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+ C+ S + E V + S+ ++D+ YT
Sbjct: 357 QDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP--HMNYT 414
Query: 361 CVVKS--PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
V++ S S R S + P K L ++ L+++W
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSIN-------------QTEPPKVRLEGRSTTSLSVSW 461
Query: 419 ----SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
+ +++ Y+V + V +T+ +L
Sbjct: 462 SIPPPQQSRV-----WKYEVTYR-----------KKGDSNSYNV-RRTEGFSVTLDDLAP 504
Query: 475 GLTYTFLVRALNSHGLSAPSP 495
TY V+AL G A S
Sbjct: 505 DTTYLVQVQALTQEGQGAGSK 525
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--------- 679
+ P P + V L+W PP + Y +
Sbjct: 321 APQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQD-SGGREDIVYSVTCEQCWPES 378
Query: 680 --IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + ++ +++L + Y+ ++ A N SR
Sbjct: 379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRS 431
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-16
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694
+ PS VP + V S+ L W P NG+I Y+I ++ +
Sbjct: 2 SSGSSGPSTVPIMH-QVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEHNEFNSSMA 58
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ T T + L G+ Y V + A AG G +S
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGK 94
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P V+ T +TL+W N I L Y++ Y + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGII-----LDYEIRYYEK---------EHNEF 53
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + L G+ Y VRA G S
Sbjct: 54 NSSMARSQTNT--ARIDGLRPGMVYVVQVRARTVAGYGKFSG 93
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 5e-16
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVL---PSRSLQ 154
+ + V FE + V WK G + ++ L
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDV-HGQWKLKGQPLAASPDCEIIEDGKKHILI 63
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + +L GE +A N ++A L V+
Sbjct: 64 LHNCQLGMTGEVSFQAANT----KSAANLKVK 91
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-15
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTN--L 63
E V G+TA E P+ WK G P+ S + DG L
Sbjct: 7 EVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKLKGQPL--AASPDCEIIEDGKKHIL 62
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + + G N + A L+V
Sbjct: 63 ILHNCQLGMTGEVSFQAANT-----KSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 6e-15
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
+ + + A ++ + QW + + + P + DG L+L
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 349 TDVTKEDSGEYTCVVKSPHGSA 370
+ +GE + + +A
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAA 86
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 187 MAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
MA I V + + + VG A F + P W L+G + EI
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQP--LAASPDC-----EII 54
Query: 246 SDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
DG +L + N + A + + A+L V
Sbjct: 55 EDGKKHILILHNCQLGMTG--EVSFQ----AANTKSAANLKV 90
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-16
Identities = 30/189 (15%), Positives = 51/189 (26%), Gaps = 30/189 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-----------NGHPIDFEN--SKRLRLV 58
+ G L L W NG FE+ R+ L
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 59 DGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTD-AVLRVLVKPYIIRGPKDTTVSASSI 116
L I + K D G Y + + + V ++ KP I + T++
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLT---- 121
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
C V + + + + R +S + C+A N V +
Sbjct: 122 ----CEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQ 170
Query: 177 ISASATLTV 185
S +
Sbjct: 171 ESEMEVVNC 179
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 6e-08
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 30/180 (16%)
Query: 202 VGRDAVFLCGIEGSPPPSTF-WMLEGNRSLI-YPGDRVDNIQAEITSDGMNL------LK 253
G + W+ N+ ++ Y + + + D ++L L+
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
I NVS+ + + D + ++ V + P+I + +N TL
Sbjct: 73 IYNVSKEDRGDYYMR--MLHETEDQWKITMEVY--EMVSKPMIYWECSNATL-------- 120
Query: 314 RCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
C+V ++ ++G+ + S + ++ + C + S
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKT--------MSYQWTNLRAPFKCKAVNRVSQES 172
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 323 VQWWRGEREVGSGPRVN-----VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
++++ ++ +G+L + +V+KED G+Y + W ++
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITME 101
Query: 378 -FESPTNPNI 386
+E + P I
Sbjct: 102 VYEMVSKPMI 111
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 6e-16
Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T T++ L W + + + + +++ F++ GL
Sbjct: 14 EVSDPTETTLSLRWRRPVAK-FDRYRLTYVSPSGKKNEMEIP----VDSTSFILRGLDAG 68
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
+ Y LV G KP+ ++ T+ P G+ +D + S + W PP
Sbjct: 69 TEYTISLVAEKGRHKSKPTTIKG-STVVGSPKGI-SFSD---ITENSATVSWTPPR---- 119
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +Y++ +TV S L L G+ Y+V++ + P
Sbjct: 120 -SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE---P 175
Query: 731 ALLSLTSGPE 740
L + +
Sbjct: 176 ISGILKTALD 185
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 9e-10
Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 63/242 (26%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T P + + T L+L W R + Y++ S +
Sbjct: 4 GTDLDNPKDLEVSDPTETTLSLRWRR----PVAKFDRYRLTYVS----------PSGKKN 49
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
+ + + S + L G YT + A S P+ + V
Sbjct: 50 EMEIPVDSTS--FILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV------------- 94
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEG 574
+G I +++ T S ++W + ++
Sbjct: 95 ---------VGSPKG-----------------ISFSDI---TENSATVSWTPPRSR-VDS 124
Query: 575 VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
+ P V G + + L Y ++ G + +P + +
Sbjct: 125 YRVS---YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI-L 180
Query: 635 RT 636
+T
Sbjct: 181 KT 182
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-07
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
+ ST G P + + T N T++W+ S + Y+V Y T
Sbjct: 90 KGSTVVGSPKGISFSDITENSATVSWTP----PRSRVDSYRVS-YV--------PITGGT 136
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V V + + L G+ Y + ++ S P
Sbjct: 137 PNVVTVDGSKTR--TKLVKLVPGVDYNVNIISVKGFEESEPI 176
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 8e-16
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN 685
S V T + PS P T VLL W+ + + Y++ +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVV-WNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS 61
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ N+ V + T L Y + + AT G G S + + P
Sbjct: 62 QN---NVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 9e-16
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 625 DGKPSNLR-AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--V 681
DG PS+ RTL+ P + + TSV L W+PP NG+I YQI +
Sbjct: 11 DGSPSHPPILERTLDDVPGPPMGIL-FPEVRTTSVRLIWQPPA--APNGIILAYQITHRL 67
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ ++ S T L Y + A R G G + +++ P
Sbjct: 68 NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PGPP + L W N I +L YQ+ + TAT
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGI----ILAYQITHRLN-------TTTANTAT 76
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+A + T T L Y F + A G +
Sbjct: 77 VEVLAPSARQ--YTATGLKPESVYLFRITAQTRKGWGEAAE 115
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 292 PPPVILF--GPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDG---S 345
P IL + T L C++ + W++ ++V + V DG
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
L+L + +DSGE+ C S + + P+ P+ G
Sbjct: 67 LILPEAKVQDSGEFECRT----EGVSAFFGVTVQDPSGPSSG 104
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 100 PYIIRGP---KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRS 152
P I P T + S +V C + W + G + E + + V
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L L + +++D+GE+ C E SA +TVQ
Sbjct: 67 LILPEAKVQDSGEFECRTEGV----SAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--LAIQD 67
S + +L C + W K+G + E S+ L + DG L + +
Sbjct: 16 DKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQKV--EESELLVVKMDGRKHRLILPE 71
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
++ D G ++C + S + V
Sbjct: 72 AKVQDSGEFECRTEG-----VSAFFGVTVQDPS 99
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P+ V ++ + + G +L Y+ E + + + W
Sbjct: 7 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVWHSKWYD 58
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
I+T+ L TY + ALN GL S S+
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 99
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 651 VLLNATSVLLKWKPPPVGTHNGV-IRTYQI---IVGGGN-NSALINMTVSASTPTLLLTN 705
V +++ +++ P GV I Y+ VG +S + ++ + +
Sbjct: 15 VEPYSSTAQVQFDEPE--ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 72
Query: 706 LSAGIRYSVSLAATNRAGTGPYSRP 730
L Y+V LAA N G G S
Sbjct: 73 LKPETTYAVRLAALNGKGLGEISAA 97
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-15
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S + P P L + TS+ + W+ P + NG I+ Y++
Sbjct: 2 SSGSSGRVETQPEVQLPGPAPNLR-AYAASPTSITVTWETPV--SGNGEIQNYKLYYMEK 58
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
V S+ + + L YS + A N+ G G +
Sbjct: 59 GTDK--EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPD 102
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 27/128 (21%)
Query: 368 GSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
GS+ S + + PGP + +T+ W
Sbjct: 1 GSSGSSGRVETQPEVQL-------------PGPAPNLRAYAASPTSITVTWETPVSGNGE 47
Query: 428 SLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487
+ Y++ + T V + S T+ L Y+F V A N
Sbjct: 48 -IQNYKLYYMEKG-----------TDKEQDVDVSSHS--YTINGLKKYTEYSFRVVAYNK 93
Query: 488 HGLSAPSP 495
HG +P
Sbjct: 94 HGPGVSTP 101
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 4e-15
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGD------- 343
PP ++ + LR E + VRG ++ W + + ++V
Sbjct: 8 PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403
G L+ T ++G YT + K+P G+A+ + + F P P PP
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP--------FPVDEVSPTPPIT 116
Query: 404 PT 405
T
Sbjct: 117 VT 118
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 8e-14
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-------LAIQDSRKTDDGRYQ 77
+E RG+P PTL W NG P+ SK + + L ++G Y
Sbjct: 25 IEF-VVRGNPPPTLHWLHNGQPL--RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 78 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT 109
+ KN GT T L +P+ + T
Sbjct: 82 LIAKNPLGTANQT-INGHFLKEPFPVDEVSPT 112
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 3e-13
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS 150
L V P ++ + E V G+ T+HW G + E +
Sbjct: 3 LTVYYPPRVVSLEEPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 151 R-----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + + G Y A+N +G + + P
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 103
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-08
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 21/124 (16%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
LTV P V E+ + + G+PPP+ W+ G + +
Sbjct: 3 LTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQ--PLRESKIIHVEYY 57
Query: 243 EITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVI 296
+ L + T + N G+ + P PV
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYT-------LIAKNPLGTANQTINGHFLKE---PFPVD 107
Query: 297 LFGP 300
P
Sbjct: 108 EVSP 111
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-15
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 636 TLECEPSGVPQ-LT-DPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALI 690
+ P+ P+ LT +V++ W+PP NG I Y + I
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDWI 60
Query: 691 NMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T+S T + +L+ Y + A N G GP S P
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 20/111 (18%)
Query: 398 PGPPTKPTL--VNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
P T+ + ++W N + Y + + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEAN----GKITAYILF--------YTLDKNIPI 56
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
W+ + + +L + Y F ++A NS G PLSD I+ R
Sbjct: 57 DDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFR 104
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 7e-15
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--------PSR 151
I+ +D V + V + V W + G + +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSEEGA-QVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L SDV ED G Y A L V+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGG----QCEAELIVE 98
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREV----GSGPRVNVTGDG--- 344
P +I+ +Q + + + +V V W + E+ R DG
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSA 370
L+ +DV +ED G Y + A
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEA 93
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-14
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTN- 62
+ Q+V GD + ++W KNG + E+S + R DG
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEV--SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L D + D GRYQ + +A L V K
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG-----GQCEAELIVEEK 100
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 7e-15
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD------- 343
P I F ++ + V+G + ++QW+ + +
Sbjct: 4 APTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 344 -GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G L L + T ++G+YT + K+ +G S F P I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW--PGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 7e-14
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDS 68
+ + + +G+P+P L W NG ++ ++ + L + +
Sbjct: 11 ESPTSDHHWCIPF-TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
++G Y + KN G E + P I
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---------MS 146
V P I ++ +V G+ + W G+ + E +
Sbjct: 1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
LQL + + G+Y A+N GK + P
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 19/111 (17%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
V AP + S ++G+P P+ W G ++ +
Sbjct: 1 VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGA--ILNESKYICTKIHVT 55
Query: 245 TSDGMNL-LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ L++ N + T + N G D + S G
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYT-------LIAKNEYGKDEKQISAHFMGW 99
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 8e-15
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P P+ V ++ + + G +L Y+ E + + +
Sbjct: 4 GSSGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVWHS 55
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
W I+T+ L TY + ALN GL S S+
Sbjct: 56 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 100
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGN-NSALIN 691
+ P + V +++ +++ P T I Y+ VG +S +
Sbjct: 2 SSGSSGPSSPSIDQ-VEPYSSTAQVQFDEPE-ATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE---PRLEDWAS 748
++ + + L Y+V LAA N G G S + E P+LE
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSGP 119
Query: 749 QSG 751
SG
Sbjct: 120 SSG 122
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-15
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
Q + G+ LEC + + W KNG I R R+ +G L
Sbjct: 9 MVTKQLEDTTAYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
I+ + K D Y + + A L V +K
Sbjct: 67 IIEGATKADAAEYSVMTTG-----GQSSAKLSVDLK 97
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGP--RVNVTGDG---S 345
++ + T L C+V + +V+W++ E+ GP R + +G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L++ TK D+ EY+ + SA L + + P
Sbjct: 66 LIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKSGP 100
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLP---SRSL 153
+ + +DTT + EC V D V W + G P+ R + L
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
+ DA EY +SA L+V ++ PS
Sbjct: 67 IIEGATKADAAEYSVMTTGG----QSSAKLSVD----LKSGPSS 102
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 9e-15
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDG---SLVL 348
N + + A C+ +V W +G E+ + + + +G L +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ + K DS YTC + G A A L +
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGR 96
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 7e-14
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLP---SRSLQL 155
+ V VF C A TV W++ + + + L +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTEHPAA-TVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPI 190
S + D+ Y C+ G+ + A L VQ
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 8e-14
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F + + +V TA+ C HP T+ W+K + S + + +G L
Sbjct: 10 CFTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLLEL--RASGKHQPSQEGLTLRL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I K D Y C + + A L V +
Sbjct: 66 TISALEKADSDTYTCDIGQA-----QSRAQLLVQGRR 97
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
A E ++L++E AVF C P + W + + + + +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLL--ELRASGKH-----QPSQE 59
Query: 248 GMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
G+ L L I + + + C G +RA L V G P
Sbjct: 60 GLTLRLTISALEKADSD--TYTC----DIGQAQSRAQLLVQGRRSGP 100
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP L +Q + L+W+ + +S + + +E W
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYED---------AMHKPGLWHH 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ NL+ + Y+F V A+NS G S PS S++ +
Sbjct: 67 QTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL 110
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSAS 697
P +LTD SV L W P +N I + I + T +
Sbjct: 18 NPPFDLELTD---QLDKSVQLSWTPGD--DNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
T T NLS + YS + A N G S + LT EP
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 1e-14
Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 49/225 (21%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK---------------------NGHPIDF 49
P V G + +L+C P H L W
Sbjct: 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTR 65
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR----G 105
S +L L + +++ D+ Y CVV+ A A L V KP
Sbjct: 66 GRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK 125
Query: 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLP--------------- 149
+ + S+ + C+ G+ + W R G +
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLL 185
Query: 150 --SRSLQLSDVRLEDAGEYVCEAENAV------GKISASATLTVQ 186
+ +L L + + + C A ++ S + LT+
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-07
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 34/178 (19%)
Query: 300 PANQTLPLRSEARLRCQVRGEGS---VQWWRGERE-----------------------VG 333
P + L C G ++W+ +R G
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLR-FESPTNPNIGFFRA 391
P + G LVL + D +Y CVV++ G+A +A L F P + +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126
Query: 392 PEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSS 445
+ + NG + W RN Q + + + M SR + +S
Sbjct: 127 TLSVMEDSA--QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREAS 182
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-07
Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 40/223 (17%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTF-WML---EGNRSLIYPGDRVDNIQAEITSDGMN 250
P + + G+ + C G+ W L G R + + + D
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 251 LLKIQNVSRTAAPLII-----------LC-LGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+ L++ +C + AAG+ A A L V P V
Sbjct: 67 RSPPYQLDSQGR-LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-PEATEVSPN 124
Query: 299 GPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDG----------- 344
+ ++ C R + W+R + + +N G
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGL 184
Query: 345 -----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+L L + + C R +SPT
Sbjct: 185 LSLTSTLYLRLRKDDRDASFHCAAHYSLPE---GRHGRLDSPT 224
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSL 153
P I+ P D V+ +C +V W + + R++VL +L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++V ++D G Y C N+VG +ASATL V
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREV----GSGPRVNVTGDGSL 346
PVI+ PA+ + A L+C+ SV W V R+ V DG+L
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPN 385
T+VT +D+G YTC+V + G+ + SA+L + + +
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTNLAI 65
P V G A L+C ++ W + + ++R L DGT L
Sbjct: 345 VEPPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-LNF 401
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ D G Y C+V N G ++ A L V
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTAS-ATLNVTGTH 435
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P++ E P+DL + G A C + S W+ + + +V + + SDG
Sbjct: 342 PVIVEPPADLNVTEGMAAELKC-RASTSLTSVSWITPNGTVMTHGAYKV---RIAVLSDG 397
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
L NV+ + C+ N+ G+ A A+L V+G +
Sbjct: 398 T--LNFTNVTVQDTGMYT-CMVSNSVGNTTASATLNVTGTHHHHH 439
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREVGSGPRVNV 340
S SG D + V G L C++ R V+W + EV P + +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLL 61
Query: 341 TGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ LVL V EDSGEY C + S S ++ P
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 91 DAVLRVLVKPYIIRGPK---DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMS 146
+ I P +V C + V W + G + E +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA-EVRWTKDGEEVVESPALL 60
Query: 147 VLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPS 196
+ R L L V+LED+GEY+CE ++ SAS T+TV P I+ PS
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEPPVRIIYSGPS 111
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 8 FRVQPKSQR---VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN- 62
+ V P + + +L C P + W K+G + S L L + T
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEV--VESPALLLQKEDTVR 68
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
L + + D G Y C + + ES + V P I
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRI 105
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 22/127 (17%)
Query: 180 SATLTVQMAPIVRERPSDLR---LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
S+ + PS V C + P W +G +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGE--EVVESPA 58
Query: 237 VDNIQAEITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+ + + L + V + LC + A ++TV+ P P
Sbjct: 59 L-----LLQKEDTVRRLVLPAVQLEDSG--EYLC----EIDDESASFTVTVTEP---PVR 104
Query: 295 VILFGPA 301
+I GP+
Sbjct: 105 IIYSGPS 111
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S V T P + TS+LL W PP + I Y+++ G
Sbjct: 2 SSGSSGDIQVITQTGVPGQPLNFK-AEPESETSILLSWTPPR----SDTIANYELVYKDG 56
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +T+ T + L L Y LAA + G G +
Sbjct: 57 EHGEEQRITIEPGT-SYRLQGLKPNSLYYFRLAARSPQGLGASTAE 101
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 19/100 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PG P ++ + L+W+ R++ I Y++
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTI-----ANYELVYKD------------GEHGE 60
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T P + L Y F + A + GL A +
Sbjct: 61 EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-14
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS--SPSGDTATATW 455
PPT P + + + L W ++ ++V+ + + + +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ S +VT+L TY F + A+ S+ + S S + L+
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 9e-06
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSA 696
P P +T L+ SV+L+W P I +++ +VG N N +
Sbjct: 4 YPPTPPNVTR---LSDESVMLRWMVPR--NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 697 STP----------TLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
P T +T+L Y + A S
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 5e-14
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP P + N + L+W G S + Y +E R +W
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEK--REAMGG---------SWSP 58
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
A + T+ L G Y F + A N HG S P + +++ G
Sbjct: 59 CAKSR-YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 6/134 (4%)
Query: 249 MNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
K PL + + P + P +
Sbjct: 437 SIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGE 496
Query: 308 RSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCV 362
A C+V V W + +RE+ + +G L + V +D GEYT
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
Query: 363 VKSPHGSASWSASL 376
K+ +G+ L
Sbjct: 557 AKNSYGTKEEIVFL 570
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-- 62
+ F V+P V G +A C P + W K+ + ++ K ++ +G +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELK-QSVKYMKRYNGNDYG 539
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I + D G Y KN GT+E L V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEI-VFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR----SLQ 154
+P I P T V F C V + V W + + + + L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTV 185
++ V+ +D GEY A+N+ G L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
+ P +P + G+ A F C + S PP W + + +
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE--LKQSVKY-----MKR 532
Query: 246 SDGMNL-LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+G + L I V N+ G+ L V+
Sbjct: 533 YNGNDYGLTINRVKGDDKGEYT-VRAKNSYGTKEEIVFLNVT 573
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 5e-14
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 12 PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------- 62
P S ++ C P G P P+L W NG ++ + ++
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
L + ++G Y + N G ++ + + P+ + S+
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNPFEFNPEDPIPDTNSTS 117
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-10
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNV---------- 340
P + + + V G+ S++W + +
Sbjct: 3 MPASVQLHTAVEMHHWC---IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGP 400
G L L T ++G YT + +P G AS S F P P P T
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN--PFEFNPEDPIPDTNS-T 116
Query: 401 PTKPT 405
P
Sbjct: 117 SGDPV 121
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-09
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-----------SVL 148
P ++ + I SV G ++ W GS + E +
Sbjct: 4 PASVQLHTAVEMHHWCI---PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L+L+ + G Y A N G+ SAS P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S P P P + N+T N LTL W + S + + +E
Sbjct: 14 LSCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDE----------GKGNG 62
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ + +T L+ + F + A N +G S S
Sbjct: 63 EFCQC-YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVL 106
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG 682
S TL CEP P++ + S+ L+WK P I+ + +
Sbjct: 2 SSGSSGAEIFTTLSCEPDIPNPPRIAN---RTKNSLTLQWKAPSDN--GSKIQNFVLEWD 56
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G + S +T LS + L+A N GT +S L + P
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGP 115
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 69
+ +V+ G L + + W KNG I SK + G L I
Sbjct: 23 EPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCS 80
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
DD YQCVV E L V
Sbjct: 81 LADDAAYQCVVGG-----EKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 11/103 (10%)
Query: 90 TDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---- 144
+ + + + VS I + V W + G +
Sbjct: 6 HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYI 64
Query: 145 -MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
S+ R+L +S L D Y C S L V+
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGE----KCSTELFVK 103
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVG-SGPRV 338
+S+ + + RL ++ V+W + +E+ SG +
Sbjct: 8 SSMDE----KKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKY 63
Query: 339 NVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSAS 371
G +L ++ + D Y CVV S
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 398 PGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PG P KP++ + ++ + W G +++ Y VEM + +
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMA-----------EGSNGNKW 66
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ + + L G Y V ++ G SA S
Sbjct: 67 EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-06
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 626 GKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG 683
S + T +P P + + ++ S + W PP I Y + +
Sbjct: 3 SGSSGVVEFTTCPDKPGIPVKPSVKGKI--HSHSFKITWDPP-KDNGGATINKYVVEMAE 59
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G+N M S +T L L+ G Y + + + G S L+ + P
Sbjct: 60 GSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 7e-14
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMS----------- 146
P I P+ + S + F CS + +T W A+ + M
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 147 -VLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185
+ + L+L +V G Y C N G S A LT+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 4e-12
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPID---------FENSKR 54
+ VQP++Q G C T W + +
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSD--SPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ T L +++ T +G YQCV+ N G+ S A L +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 2e-11
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRGEG----SVQWWRGEREV-----------G 333
D P P I P Q+ S+ C + W +
Sbjct: 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASL 376
+ + L L +V G Y CV+ + GS+ S A L
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 7e-07
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + +P G D F C S + + + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 249 MNL----LKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTV 285
+ L+++NV T+ C+ N GS + A LT+
Sbjct: 71 LMEYTTILRLRNVEFTSE-GXYQCVISNHFGSSYSVXAXLTI 111
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSL 153
P+I+ P+D +S + +C + +V W L A R+SVL +L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S V L D G Y C N G +ASA L V A
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREV----GSGPRVNVTGDGSLV 347
P I+ P + + A L+C+ SV+W V PR++V DG+L
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ V D+G YTC+V + G+++ SA L
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTNLAI 65
P+ ++ G A L+C R P ++ W + S+ R L DGT L
Sbjct: 356 MDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT-LNF 411
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+D G Y C+V NVAG +++A + V
Sbjct: 412 SHVLLSDTGVYTCMVTNVAG---NSNASAYLNVSTA 444
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + + P DL + GR A C P S W+L L + + + +D
Sbjct: 352 APFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHP---RISVLND 406
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
G L +V + + C+ N AG+ A A L VS +
Sbjct: 407 GT--LNFSHVLLSDTGVYT-CMVTNVAGNSNASAYLNVSTAGTHHHH 450
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 8e-14
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 635 RTLECEPSGVPQLT-DPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ P L ++ W PP +G+IR Y + + +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI--HTHGLIREYIVEYSRSGSKMWASQR 59
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+++ + NL Y+V +AA G G +S ++ G P
Sbjct: 60 AASNFTEI--KNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGP 105
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-07
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 16/104 (15%)
Query: 394 PSTYPGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
S+ P P L + + W+ + Y VE
Sbjct: 4 GSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSG----------- 51
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ W S + NL V YT V A+ S G+ S
Sbjct: 52 SKMWASQ--RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSD 93
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ + + + AG +A L C + + W K+G + +S ++R+ G L
Sbjct: 13 KEQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGKKL--SSSSKVRVEAVGCTRRL 68
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+Q + + + G Y C + L+V + +
Sbjct: 69 VVQQAGQAEAGEYSCEAGG-----QQLSFRLQVAGQCF 101
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVG 333
GS + + + P + A L C+V + V W++ +++
Sbjct: 1 GSSGSSGKVVFAKEQP--------AHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLS 52
Query: 334 SGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSAS 371
S +V V G LV+ + ++GEY+C S
Sbjct: 53 SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 7e-13
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-D 143
G+ S+ V+ +P ++ A + C V V W + G +
Sbjct: 1 GSSGSSGKVVFAKEQP----AHREVQAEAGASATLSCEVAQAQT-EVTWYKDGKKLSSSS 55
Query: 144 RMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++ V +R L + +AGEY CEA S L V
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVA 97
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 99 KPYII-RGPKDTTVSASSIIVFECSVGGDAVLTVHWK----RLGSAMPEDRMSVLPSRSL 153
+ I R + V + F C GD + W L SA R++V P +L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++ +++D G Y+C A NA G S A L V+
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDGSL 346
+ + + C+ G ++ W + + S R+ V DG+L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ +D+G Y C+ + G+ S A L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ + V G T C G P P ++W H + +++ RL + L ++ ++
Sbjct: 391 KAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+G Y C+ N G +S A L V
Sbjct: 450 VQDNGTYLCIAANAGGN-DSMPAHLHV 475
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T + A I + + ++ G F+C +G PPP+ W+ + N +
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV----SAKSNGRL 435
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+ DG L+++ + C+ NA G+D A L V
Sbjct: 436 TVFPDGT--LEVRYAQVQDNGTYL-CIAANAGGNDSMPAHLHVR 476
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 3e-13
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------------- 151
+S +V C+ + + + + + ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+L + V D G Y C A + + S + V P V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 1e-10
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 12 PKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------ 62
++ G+ +L C + W+ + L +
Sbjct: 15 SHGIELSVGEKLVLNCTARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 63 ---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L I ++D G Y C + T++++ +RV KP++
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFV 114
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 4e-10
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 15/107 (14%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQW-------------WRGER 330
+ P V+L L + + L C R E + + +
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 331 EVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L + VT+ D G YTC S + S +R
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 6/164 (3%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+ S + + ++C R L+ KN + + I
Sbjct: 13 SAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHM 71
Query: 69 RKTDDGRYQCVVKNVAGTRESTDA----VLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
GRYQC + +D V + KP++ + I CS
Sbjct: 72 DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSA 130
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
+ G S + L V L +G Y C
Sbjct: 131 HIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRC 174
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-----L 346
P P I + +PL +++CQ E + + +
Sbjct: 8 PMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 66
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
V+ + +G Y C + H +S +L
Sbjct: 67 VIDHMDANKAGRYQCQYRIGHYRFRYSDTLE 97
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
G + V + TS+L+ W+PP NG ++ Y++ + N+ V +
Sbjct: 7 GPGPVENLQAVSTSPTSILITWEPPA--YANGPVQGYRLFCTEVSTGKEQNIEVD--GLS 62
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
L L YS+ A NR G G + + S P
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGP 103
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PGP V+ + + + W N + GY++ +
Sbjct: 4 GSSGPGPVENLQAVSTSPTSILITWEPPAYANGP----VQGYRLFCT-----------EV 48
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+T + + S + L Y+ A N +G P +D+I +
Sbjct: 49 STGKEQNIEVDGLS--YKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVV 96
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--LA 64
++ + +V G P+ + W KNG I S + G L
Sbjct: 11 AKILDPAYQVDKGGRVRFVV--ELADPKLEVKWYKNGQEI--RPSTKYIFEHKGCQRILF 66
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I + + TDD Y + E L V P
Sbjct: 67 INNCQMTDDSEYYVTAGD-----EKCSTELFVRSGP 97
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 309 SEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVK 364
R ++ + V+W++ +E+ + G L + + D EY
Sbjct: 24 GRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA- 82
Query: 365 SPHGSASWSASLRFESP 381
G S L S
Sbjct: 83 ---GDEKCSTELFVRSG 96
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-11
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 99 KPYIIRGPKD-TTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLP---SRSL 153
+ V + F + + V W + G + P + R L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKL-EVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+++ ++ D EY A + S L V+ P
Sbjct: 66 FINNCQMTDDSEYYVTAGDE----KCSTELFVRSGP 97
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-12
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ P V + + +S+ L W P +G + Y++ G +
Sbjct: 3 SGSSGPPAVSDIR-VTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S L L G Y V + A + AG GP+ +
Sbjct: 60 KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P + + + + L+LAW+ S ++L Y+V+ + G +
Sbjct: 4 GSSGPPAVSDIRVTRSSPSSLSLAWAVPRA-PSGAVLDYEVKYH--------EKGAEGPS 54
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + T+ + L G +Y VRA + G
Sbjct: 55 SVRFLKTSENR--AELRGLKRGASYLVQVRARSEAGYGPFGQ 94
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 10/98 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + + L W L Y V + V
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTK----------EGIARERVE 67
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
++ +T+ NL Y F V A N HG S
Sbjct: 68 NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 105
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 7e-09
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VGGGN 685
S A T PS + L++ + L W+ P +G TY + G
Sbjct: 5 SSGEHAPATTGPLPSAPRDVV-ASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIA 62
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+ N + + + NL Y + A N+ G+G S P L + + PE
Sbjct: 63 RERVENTSHPGEM-QVTIQNLMPATVYIFRVMAQNKHGSGESSAP--LRVETQPESG 116
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S P L V +++ W PP N V+R Y I G G
Sbjct: 2 SSGSSGPENDLDESQVPDQPSSLH--VRPQTNCIIMSWTPPL--NPNIVVRGYIIGYGVG 57
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A + V + + L + Y +SL A N AG G + + + P
Sbjct: 58 SPYAET-VRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ S P P+ V N + ++W+ + + GY + Y P
Sbjct: 9 ENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLN-PNIVVRGYIIG-YGVGSPY----- 60
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + ++ L Y ++A N+ G P
Sbjct: 61 ------AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 4e-12
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSA 696
S VP + V TS+ + W ++ Y+I G G +S + TV
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYS--SWQNVKYYRITYGETGGDSPVQEFTVPG 61
Query: 697 STPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
T ++ L G+ Y++++ A + G
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PTK +V+ T L ++W ++ Y++ Y +G +
Sbjct: 3 SGSSVSSVPTKLEVVDATPTSLKISWDAYYS-SWQNVKYYRIT-YG-------ETGGDSP 53
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + T++ L G+ YT V A ++
Sbjct: 54 VQEFTVPGYYST--ATISGLKPGVDYTITVYAYDTFFPGYEP 93
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 5e-12
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 8/101 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + T + + L W + + D ++
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE-------EEDPKMHSYGV 68
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ T + V L Y F ++ + G SP+
Sbjct: 69 IYTG-YATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVS 108
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-07
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 6/117 (5%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVI--RTYQIIVGGG 684
S + + P P PV+ T S+ L W G I
Sbjct: 3 SGSSGMEPHKVVPLSKPH--PPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEED 60
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + ++ L Y L T+ +G YS ++ T P
Sbjct: 61 PKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 7e-12
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 4/106 (3%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ + GDT + C + + + + + S V +L + +
Sbjct: 252 KESAWEAHLGDTLTIRC-DTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
D G Y C + + V + + G DT +A+
Sbjct: 311 EDGGVYTCYAMGETFNET---LSVELKVYNFTLHGHHDTLNAAADP 353
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 300 PANQTLPLRSEARLRCQVRGEG-SVQWW--RGEREVGSGPRVNVT-GDGSLVLTDVTKED 355
+ L +RC + +G + W E+ + G +V+ +G L V ED
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPT--NPNIGFFRAPEPSTYP 398
G YTC + + S L+ + T + A +P ++P
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHP 357
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 14/116 (12%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHW---KRLGSAMPEDRMSVLPSRSLQLSDVRLED 162
+ C + V + + + + L V++ED
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 163 AGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218
G Y C A + S L V + G + P
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL-----------HGHHDTLNAAADPWSHP 357
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 9/101 (8%), Positives = 23/101 (22%), Gaps = 8/101 (7%)
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253
+ S +G C + + + ++ +G L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNE--QVLSQGSNGSV---SVRNGD--LF 304
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+ V + C + ++ L V +
Sbjct: 305 FKKVQVEDGGVYT-CYAMGETFNETLSVELKVYNFTLHGHH 344
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 1e-11
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPS 150
+ + TV + +C ++ W + + +L
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 151 R----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLR 199
S+ + +V L+D G Y C + + + V PS R
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWR 115
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-08
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------GEREVGSGPRVNVT-- 341
+ T+ L+C S+QW E V + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 342 --GDGSLVLTDVTKEDSGEYTCVVKSPH 367
S+ + +VT +D G Y C+ S
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDS 89
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-08
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSK-----RLRLVDG 60
++ V G T L+C +L W +G I + +L+
Sbjct: 3 SLTNHTETITVEEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 61 T----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ ++ + + D+G Y+C+ + + + + + + VL
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATM 103
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 398 PGPPTKP--TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P P P TL + L W++ G+S L+ Y +EM A W
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMS------------ENNAPW 64
Query: 456 VRVATNVPSPIL--TVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ +V TV L +Y F + A+N G S ++ +
Sbjct: 65 TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 640 EPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTY--QIIVGGGNNSALINMTVS 695
+ P+ L ++ L W P N + Y ++ + L+ +V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPF--DGNSPLIRYILEMSENNAPWTVLLA-SVD 72
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ + L Y L A N G G +S+
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 107
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 63.4 bits (153), Expect = 1e-11
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 34/188 (18%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ + +G + L C + L W+KNG + ++ K L L D S
Sbjct: 5 NIEYKVSISGTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDF-------SEV 54
Query: 71 TDDGRYQCVVKN-------------VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
D G Y C + DA + K + T A +++
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 118 VFECSVGGDAVL--------TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCE 169
+ S G +VL T+ W + GS + + + L + + G Y C+
Sbjct: 115 QVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQ 171
Query: 170 AENAVGKI 177
Sbjct: 172 GAKETSNP 179
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 312 RLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGSA 370
L C + + +++W + +E+ D LVL D ++ EDSG Y C + + +
Sbjct: 18 ELTCPLDSDENLKWEKNGQELPQKH------DKHLVLQDFSEVEDSGYYVCYTPASNKNT 71
Query: 371 SWSASLRFESPTNPNIGFFR----APEPSTYPGPPTKP 404
R S + + + + G T
Sbjct: 72 YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 625 DGKPSNLRAVRTLE-----CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI 679
G ++ + T E VP V TS+++ W PP N V+R Y I
Sbjct: 6 SGPATDWLSAETFESDLDETRVPEVPSSLH-VRPLVTSIVVSWTPPE--NQNIVVRGYAI 62
Query: 680 IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTG-PYSRPALLSLTSG 738
G G+ A + V + NL Y ++L A N G G P A+ +
Sbjct: 63 GYGIGSPHAQT-IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTS 121
Query: 739 PEP 741
Sbjct: 122 GPS 124
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 23/136 (16%)
Query: 368 GSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
S + L E+ + + + P P+ V + ++W+
Sbjct: 5 SSGPATDWLSAETFESD-------LDETRVPEVPSSLH-VRPLVTSIVVSWTPPENQNIV 56
Query: 428 SLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487
+ GY + Y P + ++V T+ NL Y ++A N+
Sbjct: 57 -VRGYAIG-YGIGSPHAQT---------IKVDYKQRY--YTIENLDPSSHYVITLKAFNN 103
Query: 488 HGLSAPSPLSDEIVLR 503
G P + V R
Sbjct: 104 VGEGIPL--YESAVTR 117
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-11
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 14/100 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + ++A + W + + Y++E +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEW------------GGVEGSMQI 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
P + L+ TY V+AL+ G S +
Sbjct: 55 CYC-GPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVV 93
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 641 PSGVP-QLTDPVLLNA--TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697
S P Q P + T + W+ P ++ + Y++ GG S I
Sbjct: 4 GSSGPDQCKPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSMQICYCGPGL 61
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + LS Y + A + G GP+S
Sbjct: 62 SYEI--KGLSPATTYYCRVQALSVVGAGPFS 90
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S R P +L L TS+ + W+ P ++ Y +
Sbjct: 2 SSGSSGSHDSRLTAGVPDTPTRLV-FSALGPTSLRVSWQEP---RCERPLQGYSVEYQLL 57
Query: 685 NNSALINMTVSA-STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732
N L + + + ++++ +L Y + A ++ G G +
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI 106
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-10
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 20/106 (18%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSR---NNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+ P PT+ L ++W + GY VE Y
Sbjct: 14 TAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPL-----QGYSVE-YQL----------L 57
Query: 451 ATATWVRV-ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
R+ N + V +L +Y F VRA + G
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 4e-11
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPSR----S 152
++ TV + C V + ++ W A+ ++R+ ++ + S
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ +SDV L D G+Y C + ++ A LTV P
Sbjct: 73 ISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------RLRLVDGT-- 61
++ V G TA+L C + +L W + + K R+ LV +
Sbjct: 11 PLTQNVTVVEGGTAILTC-RVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH 69
Query: 62 --NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
++++ D +D+G+Y C + + ++ A L VL P
Sbjct: 70 ELSISVSDVSLSDEGQYTCSL-FTMPVK-TSKAYLTVLGVP 108
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 8e-09
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------GEREVG 333
V G P N T+ A L C+V S+QW +++
Sbjct: 2 KVKGSQGQFPL-----TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKAL 56
Query: 334 SGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
R+ + S+ ++DV+ D G+YTC + + A L
Sbjct: 57 RDNRIELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYL 102
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 4e-11
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 6 EEFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E + +V+ +G T +L C +P ++W+ N I + + D +L+
Sbjct: 6 EMGGITQTPYKVSISGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 62
Query: 65 IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
+++ + + G Y C + + LR V
Sbjct: 63 LKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 97
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-05
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 313 LRCQVRGEGSVQWWRGEREVGS--GPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGS 369
L C + W ++ +G + + + L L + ++ E SG Y C +
Sbjct: 26 LTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 85
Query: 370 AS 371
+
Sbjct: 86 DA 87
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 7e-11
Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 41/215 (19%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECG--PPRGHPEPTLVWKKNGHP--------------- 46
+F V S + A G+ A L C P L W +
Sbjct: 3 LQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDR 62
Query: 47 IDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
R ++ L I + +D G+Y C ++ + A++ + V
Sbjct: 63 QSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAA 119
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHW-KRLGSAMPEDRMSVLP--------S 150
D I EC S G + W G +P V+ +
Sbjct: 120 LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVA 179
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+ + C +++ + +A++++
Sbjct: 180 ASVIMRG---SSGEGVSCTIRSSLLGLEKTASISI 211
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 7e-06
Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 54/220 (24%)
Query: 110 TVSASSIIVFECSVGGDAVL-------------TVHWKRL-----------GSAMPEDRM 145
+ I+ VG DA L + W G + + +
Sbjct: 8 LGPSGPILAM---VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQS 64
Query: 146 SVLPSR-------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+ R +L++ +V D+G+Y+C ++ G A + +++A +
Sbjct: 65 APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGS 122
Query: 193 ERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
+ D++ C G P P W G+ + ++A + +DG+ L
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK-------GENIPTVEAPVVADGVGL 175
Query: 252 LKIQ---NVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + ++ + C ++ AS++++ P
Sbjct: 176 YAVAASVIMRGSSGEGVS-CTIRSSLLGLEKTASISIADP 214
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 61/186 (32%)
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQW-------- 325
A +V GP P + + G +A L C + S ++W
Sbjct: 1 ADLQFSVLGPSG--PILAMVG---------EDADLPCHLFPTMSAETMELKWVSSSLRQV 49
Query: 326 ---WRGEREVGSG------PRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
+ +EV R ++ G +L + +VT DSG+Y C +
Sbjct: 50 VNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE 109
Query: 371 SWSASLRFESPTNPNIGFFRAPEPST----------YPGP------------PTKPTLVN 408
L+ + + + + YP P PT V
Sbjct: 110 KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV 169
Query: 409 QTANGL 414
GL
Sbjct: 170 ADGVGL 175
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 7e-11
Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 25/195 (12%)
Query: 17 VAAGDTALLECGPPRG---HPEPTLVWKKNGHPI------------DFENSKRLRLVDGT 61
+ A L CG + + W+K + +++N + +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV-KPYIIRGPKDTTVSASSIIV 118
++ I R +D+G Y+CVV + A + + V + D + S+I
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 119 FEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV------RLEDAGEYVCEAE 171
C + GG + W G + +V +L V + ++C +
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
Query: 172 NAVGKISASATLTVQ 186
+++ +
Sbjct: 186 YGHLRVNQTFNWNTA 200
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 22/131 (16%)
Query: 119 FECSVGGDAVLTVHWKRLGSA-----------MPE--DRMSVLPSR--SLQLSDVRLEDA 163
SV A ++W++ PE +R + S+ + +R D
Sbjct: 18 HNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE 77
Query: 164 GEYVCEAENAVGKIS-----ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPP 217
G Y C A TL+V+ SD + +C G P
Sbjct: 78 GTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS-ISDFEIPTSNIRRIICSTSGGFPE 136
Query: 218 PSTFWMLEGNR 228
P W+ G
Sbjct: 137 PHLSWLENGEE 147
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS---RK 70
+ + + C G PEP L W +NG ++ N+ + + A+
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM 174
Query: 71 TDDGRYQCVVKNVAGTREST 90
T + + C++K T
Sbjct: 175 TTNHSFMCLIKYGHLRVNQT 194
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 9e-11
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPV--GTHNGVIRTYQIIVGGGNNSALINMT 693
+ P P +L+ ++ + W + R Y + +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+A+T + L+T L Y S+ T + +S A
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 14/101 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN---NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PP + + + + W+ N + Y V + ++ AT
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
VT L Y F V S S
Sbjct: 69 SY-----------LVTGLKPNTLYEFSVMVTKGRRSSTWSM 98
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 551 EVKPMTSTSVKLTWE---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
+ ++ ++++TW + I Y+ +LVTGL
Sbjct: 16 QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGL 75
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
+ YEF ++ G S T E
Sbjct: 76 KPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 52/333 (15%), Positives = 90/333 (27%), Gaps = 55/333 (16%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLC-GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
L + P L G C G+E + W+L +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRK--------PAAGSHP 52
Query: 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
+ G LL +++V + C AG L V P P L
Sbjct: 53 SRWAGMGRRLL-LRSVQLHDSGNYS-C---YRAGRPAGTVHLLVDVP---PEEPQLSCFR 104
Query: 302 NQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT--GDGSLVLTDVTKE----- 354
L + + C W + + + D +
Sbjct: 105 KSPL-----SNVVC---------EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQ 150
Query: 355 DSGEYTCVVKSPHGSASW-----SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+S +++C + P G +S+ + S + F P T V +
Sbjct: 151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVAR 210
Query: 410 TANGLTLAWSRNNQIGSSSL-LGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468
L++ W + SS L +++ Y R S T+
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRFELR-Y-RAERSK---------TFTTWMVKDLQHHCV 259
Query: 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ + GL + +RA G S S E +
Sbjct: 260 IHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAM 292
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 42/224 (18%), Positives = 64/224 (28%), Gaps = 18/224 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V GD+ L C T+ W S+ G L ++
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR--WAGMGRRLLLR 65
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-----YIIRGPKDTTVSASSIIVFEC 121
+ D G Y C R + L V V P R + V
Sbjct: 66 SVQLHDSGNYSCYRAG----RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTP 121
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS---DVRLEDAGEYV--CEAENAVGK 176
S+ AVL V + A S + S V D+ Y+ ++VG
Sbjct: 122 SLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGS 181
Query: 177 ISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPS 219
S T T Q I++ P+++ + + P S
Sbjct: 182 KF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHS 224
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 10/224 (4%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLH---AGEASGF 602
+L+ + ++V W +T + + + + PA + + + S
Sbjct: 99 QLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQ 158
Query: 603 LVTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLL 660
L S Y + GS K + L+ +P +T V N + +
Sbjct: 159 LAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVT-AVARNPRWLSV 217
Query: 661 KWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720
W+ P + +++ + V ++ + +G+R+ V L A
Sbjct: 218 TWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQE 277
Query: 721 RAGTGPYSR--PALLSLTSGPEPRLEDWASQSGRSRGDGTMETD 762
G G +S P + S + T + D
Sbjct: 278 EFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDD 321
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 391 APEPSTYPGPPT-KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
+ P P + N TL+W + GY +E+ D
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVP-ADGYILELD-----------D 50
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ V + TV L TY V+A N G+S S
Sbjct: 51 GNGGQFREVYV-GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 95
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P+ + + S L WK PP Y + + GN + V T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGNGGQFREVYVGKET-M 66
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L Y+ + A N+ G PYS+ +L + G P
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGG 683
S A+ + PS + PVL+++ V L W+PP G I+T+ +
Sbjct: 2 SSGSSGKPAIPSSSVLPSAPRDVV-PVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSRE 58
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
G+N T + L + NL Y+ + A N G G S+P
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQP 105
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P S P P V ++ + L+W + ++ + V +SR
Sbjct: 11 IPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAE-AKGNIQTFTVF-FSR----------E 58
Query: 451 ATATWVRVAT-NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T S LTV NL YTF V A N G S
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQ 104
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-10
Identities = 48/330 (14%), Positives = 89/330 (26%), Gaps = 54/330 (16%)
Query: 195 PSDLRLEVGRDAVFLC-------GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P +++ + +C W + Q I +
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNH--------FTIPKEQYTIINR 62
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ + +++ L L ++ ++ P P P
Sbjct: 63 TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP-PEKPKN------------ 109
Query: 308 RSEARLRCQVRGEGSVQ-WWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKS 365
L C V ++ W G RE + + D + +C V
Sbjct: 110 -----LSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDY 164
Query: 366 PHGSASW-----SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL--VNQTANGLTLAW 418
A T+ +I F P P PP ++ + ++ L L W
Sbjct: 165 STVYFVNIEVWVEAENALGKVTSDHINF--DPVYKVKPNPPHNLSVINSEELSSILKLTW 222
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ N I S +L Y ++ + + T TV +L Y
Sbjct: 223 T-NPSIKSVIILKYNIQYR--------TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 273
Query: 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSE 508
F +R + G S S+E T+ +
Sbjct: 274 VFRIRCMKEDGKGYWSDWSEEASGI-TYED 302
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 21/236 (8%)
Query: 3 LLREEFRVQPKSQRVAAGDTALLEC------GPPRGHPEPTLVWKKNGHPIDFENSKRLR 56
LL + P+S V C +VWK N I +
Sbjct: 2 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP--KEQYTI 59
Query: 57 LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
+ + + + + C + G E + ++ PK+ + +
Sbjct: 60 INRTASSVTFTDIASLNIQLTCNILTF-GQLEQNVYGITIISG-LPPEKPKNLSCIVNEG 117
Query: 117 IVFECS------VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV--C 168
C + T+ + + + S + D
Sbjct: 118 KKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV-DYSTVYFVNIEVWV 176
Query: 169 EAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
EAENA+GK++ S + V+ P +L + + + + + P +
Sbjct: 177 EAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI 231
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 9e-06
Identities = 19/180 (10%), Positives = 48/180 (26%), Gaps = 13/180 (7%)
Query: 556 TSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
++ W+ ++E + A S + ++
Sbjct: 116 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADC---KAKRDTPTSCTVDYSTVYFVNI 172
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHN 671
E ++ ++ S+ + P + + L W P + +
Sbjct: 173 EVWVEAE-NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--S 229
Query: 672 GVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+I Y I S + +++ + + +L Y + G G +S
Sbjct: 230 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 3e-10
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 95 RVLVKPYIIRGPKD-TTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS 152
+ VKP + P+ V+ + C + D +V W+ L +++ + S
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS-V 60
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCG 211
L + + L AG VC + L V P + P+ L V D C
Sbjct: 61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACT 117
Query: 212 IEGSPPPS----TFWMLEGNRSL 230
P +F +L G + L
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQEL 140
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 6e-07
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 12/136 (8%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNL 63
+ +V+P VA G + L C ++ W+ + + L
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL----GAVQSDTGRSVL 61
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV 123
++++ + G CV G L V P + V + C+
Sbjct: 62 TVRNASLSAAGTRVCVGSC-GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEV--ACTA 118
Query: 124 GGDA---VLTVHWKRL 136
+ + L
Sbjct: 119 HKVTPVDPNALSFSLL 134
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 293 PPVILFGPANQT-LPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P+ + P + L + +L C++ SVQW + +G+ + TG L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ--SDTGRSVLTV 63
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
+ + +G CV + + L + N S P P +
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN-------QLTVSPAALVPGDPEVAC 116
Query: 409 QTANG-------LTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT 460
L+ + Q + + LG +V+ T W
Sbjct: 117 TAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL 176
Query: 461 NVPSP 465
P P
Sbjct: 177 GTPVP 181
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 4e-10
Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 36/213 (16%)
Query: 8 FRVQ-PKSQRVAAGDTALLEC---GPPRGHPEPTLV---WKKNGHPIDFE-----NSKRL 55
+ +Q KS V G L+ C P R + W ++G + N+
Sbjct: 2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61
Query: 56 RLVDGTN---------------LAIQDSRKTDDGRYQCVVKNVAGTRESTD---AVLRVL 97
R+ T L+I D+R D G Y V+ + S L V
Sbjct: 62 RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLGSAMPEDRMSVLPSRSL 153
+ + CS+ G LT W + + + S L
Sbjct: 122 ALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--SSEL 179
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L+ + C+ + +++ T+ +
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVG----KISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
SL + D R+ED G Y E L V + LE GR
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142
Query: 208 FLCGI----EGSPPPSTFWMLEGNRSL 230
C + E PP + W L
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPL 169
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-10
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 398 PGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P+ P++ + L+ ++ + G + +L Y V+ S W
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRS----------KDKEDQW 54
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ + + +L + Y + A N G S P+ +
Sbjct: 55 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 100
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-07
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLLLTNLSAGIRYS 713
S L G I Y + + + V + ++L +L + Y
Sbjct: 21 GKSFKLSITKQDDG--GAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYE 78
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEPRL 743
V + A NR G P + + P+P +
Sbjct: 79 VQITAANRLGYSE---PTVYEFSMPPKPNI 105
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 6e-10
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 395 STYPGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ P +PT++ N L W ++ LLGY+++
Sbjct: 2 SSGSSGPGRPTMMISTTAMNTALLQWHPPKELPGE-LLGYRLQYC-----------RADE 49
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
A + TVT L G TY F + A N GL
Sbjct: 50 ARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF 91
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
+ LL+W PP G + Y++ + + + +T L G Y
Sbjct: 20 MNTALLQWHPPK--ELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIF 77
Query: 715 SLAATNRAGTGPYSRPALLSLTSGPEP 741
LAA NRAG G + + P
Sbjct: 78 RLAAKNRAGLGEEFEKEIRTPEDLSGP 104
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
TS+L+ W P + + Y+I G G NS + TV S+ T ++ LS G+
Sbjct: 16 ATPTSLLISWDAPM---SSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVD 72
Query: 712 YSVSLAATNRAGTGPYSRPALLSLT 736
Y++++ A G + +S+
Sbjct: 73 YTITVYAWGEDSAGYMFMYSPISIN 97
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 9e-09
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ PTK +V T L ++W + SSS+ Y++ Y +G +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWD--APMSSSSVYYYRIT-YG-------ETGGNSPVQ 51
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
V + + T++ L+ G+ YT V A I +
Sbjct: 52 EFTVPYSSST--ATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINYR 99
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMP--------------EDRM 145
I + + I+ +C + V V+W++ + +DR+
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCE-AENAVGKISASATLTVQMAPIVRERP 195
+ P L L + + D GEY C G + L V + +
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-08
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 300 PANQTLPLRSEARLRCQVRGEGS----VQWWRGEREVGS-------------GPRVNVTG 342
N + L+C + + V W + ++ + RV
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 343 DGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLR-FESPTNPN 385
L L +T D+GEY C+ + P G+ + L ES +
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEH 114
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSK-----------RLRL 57
+ G + +L+C + T V W++ + N+ R+
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 58 VDGTNLAIQDSRKTDDGRYQCVVKNV-AGTRESTDAVLRVLVKPYIIRGPK 107
G L +Q D G Y C+ GT L VL G +
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGR-IFLEVLESSVAEHGAR 117
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-09
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
++ P +V V V G + T+ W R +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
S + + L + V L D G Y E + S + V+
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-08
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRG---EREVGSGPR 337
S P V L P + ++ +A + +V G+ +++W++G E SG R
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 338 --VNVTGDGS-------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ + + L + V D G Y VK+ S ++ E+P
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-05
Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 14/96 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVW---------KKNGHPIDFENSK-R 54
F +P S V G A++ G PT+ W K+G F+ S
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDK-PTIKWFKGKWLELGSKSGARFSFKESHNS 73
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
V L I D G Y+ VK
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCG 109
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTP 699
S VP + V TS+L+ W + Y+I G G NS + TV S+
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
T ++ LS G+ Y++++ A YS
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYS 87
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ PTK +V T L ++W ++ SS+ Y++ Y +G +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRIT-Y-------GETGGNSPVQ 49
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + + T++ L+ G+ YT V A S+ S
Sbjct: 50 EFTVPGSSST--ATISGLSPGVDYTITVYAYYSYYDLYYS 87
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PP + +T G+ L W L GY +E
Sbjct: 1 GSSGSSGLSPPR-GLVAVRTPRGVLLHWDPPEL-VPKRLDGYVLEG------------RQ 46
Query: 451 ATATWVRVATNVP--SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ W + V L V L + Y F + A +S PS ++
Sbjct: 47 GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 639 CEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVS 695
S ++ T VLL W PP + Y + G +++ V+
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPPE--LVPKRLDGYVLEGRQGSQGWEVLDPAVA 59
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ LL+ L + Y L A + S A +S TSG
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS-TSGLSG 104
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PP + N T + W + G V D + T V +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQP----PILPIEGILVTF--------GRKNDPSDETTVDLT 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+++ S LT+TNL TY + A N S P
Sbjct: 52 SSITS--LTLTNLEPNTTYEIRIVARNGQQYSPPV 84
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-08
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
+ T+ ++ W+PP I + G + S + +++S +L LTNL
Sbjct: 13 ITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTT 67
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y + + A N P P + T+G
Sbjct: 68 YEIRIVARNGQQYSP---PVSTTFTTGSLE 94
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-09
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P T ++ TA+ ++W S ++ G++VE S +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVS----ASDTVSGFRVEY--------ELSEEGDEP 49
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
++ + + S + + +L G Y V ++ G +
Sbjct: 50 QYLDLPSTATS--VNIPDLLPGRKYIVNVYQISEDGEQSLI 88
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
A+S ++ W + Y++ G L + ++ ++ + +L G +Y V
Sbjct: 19 ASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYL---DLPSTATSVNIPDLLPGRKYIV 74
Query: 715 SLAATNRAGTGPYS 728
++ + G
Sbjct: 75 NVYQISEDGEQSLI 88
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-09
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 5/103 (4%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
S V + L W G + +Y++ V + P
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEE----WHQMVLEP 62
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+LLT L Y V + G GP+S + P
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPS 105
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 395 STYPGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ + +L V + L L W+ + L Y++ + ++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ------- 57
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V P + +T L TY VR L G SP
Sbjct: 58 --------MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSP 92
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 7e-09
Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 7/165 (4%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+P V + C G E G + K ++ I D
Sbjct: 8 WAEP-HFMVPKEKQVTICCQGNYGAVEYQ--LHFEGSLFAVDRPKPPERINKVKFYIPDM 64
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGG 125
G+Y C+ + E ++ + V+ + Y + V + + F C
Sbjct: 65 NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LD 123
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEA 170
A + G + R L V G Y C
Sbjct: 124 TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVL 348
P P I P + +P + + CQ E + + R + +
Sbjct: 3 PKPFIWAEP-HFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYI 61
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASL 376
D+ +G+Y+C+ + + S L
Sbjct: 62 PDMNSRMAGQYSCIYRVGELWSEPSNLL 89
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 11/220 (5%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+P V + C G E G + K ++ I D
Sbjct: 11 WAEP-HFMVPKEKQVTICCQGNYGAVE--YQLHFEGSLFAVDRPKPPERINKVKFYIPDM 67
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGG 125
G+Y C+ + E ++ + V+ + Y + V + + F C
Sbjct: 68 NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LD 126
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA-SATLT 184
A + G + R L V G Y C S S +
Sbjct: 127 TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVK 186
Query: 185 VQMAPIVRE---RPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
+ + + P D +L E
Sbjct: 187 LLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHA 226
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
T+ L+ W PP + + +++ G + ++ + NL Y
Sbjct: 16 DTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYE 70
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEP 741
VSL + + S PA + T+G
Sbjct: 71 VSLISRRGDMS---SNPAKETFTTGLAA 95
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-07
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 14/97 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P++ + + T + W S + G+++ T +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMP----PSQPVDGFELTY--------GIKDVPGDRTTID 50
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + ++ NL Y + + S P+
Sbjct: 51 LTEDENQ--YSIGNLKPDTEYEVSLISRRGDMSSNPA 85
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
+ + + W+ P +R ++ + + +L LS+ Y+
Sbjct: 20 SHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYT 74
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEP 741
V + G +T+ P
Sbjct: 75 VRVTCLYPGGGSS---TLTGRVTTKKAP 99
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-06
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PP + + + + W + +V Y S +
Sbjct: 3 SGSSGLAPPRHLGFSDVSHDAARVFWEG----APRPVRLVRVT-YV--------SSEGGH 49
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ N S + L+ TYT V L G S+
Sbjct: 50 SGQTEAPGNATS--AMLGPLSSSTTYTVRVTCLYPGGGSSTL 89
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 2/106 (1%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP--PVGTHNGVIRTYQIIVGGGN 685
S P P V L +V + W P +R Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+++ + ++ + T L Y S+ T + +S A
Sbjct: 65 SASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
P+ ST PP V T + + ++W S +S + Y V R S+S
Sbjct: 12 VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTV--RWRTSFSASAK 69
Query: 448 GDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T + T T L Y F V + S S
Sbjct: 70 YKSEDTTSLSY---------TATGLKPNTMYEFSVMVTKNRRSSTWSM 108
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 2e-08
Identities = 36/197 (18%), Positives = 52/197 (26%), Gaps = 27/197 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAI 65
E V+PK V + + C PE L N +D + + LV
Sbjct: 4 EVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLV------- 56
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
S + D QC V +I + T V+ EC V
Sbjct: 57 --SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 114
Query: 126 D---AVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSD-VRLEDAG-EYVCEAENAVG- 175
LT+ R L + + ED + C A +
Sbjct: 115 VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS 174
Query: 176 -------KISASATLTV 185
K SA L +
Sbjct: 175 RGGNIFHKHSAPKMLEI 191
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 7e-07
Identities = 25/201 (12%), Positives = 58/201 (28%), Gaps = 29/201 (14%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
V RP L +E C + P N+ L+ +
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQ-------------- 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
K VS + ++ C + + ++++V P P ++ + +
Sbjct: 51 -WKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQP----PRQVILTLQPTLVAVGKS 105
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSG-EYT 360
+ C+V ++ +RG + + + +ED ++
Sbjct: 106 FTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS 165
Query: 361 CVVKSPHGSASWSASLRFESP 381
C+ S + + +P
Sbjct: 166 CLAVLDLMSRGGNIFHKHSAP 186
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 7/128 (5%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE 165
PK V + CS + + + + D + + +S++
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQW--KHYLVSNI--SHDTV 64
Query: 166 YVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TFW 222
C + + S ++ ++V P V + VG+ C + P T +
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 223 MLEGNRSL 230
+ GN +L
Sbjct: 125 LFRGNETL 132
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-08
Identities = 35/191 (18%), Positives = 52/191 (27%), Gaps = 31/191 (16%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
+P +E G C P R+ T G+
Sbjct: 5 ADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG--------------TQRGLR 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
L Q V +C A + AR + P V L P P+
Sbjct: 51 WLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQR---PDRVEL-MPLPPWQPVGEN 106
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSG-EYT 360
L C+V G G ++ RG +E+ +ED G ++
Sbjct: 107 FTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFS 166
Query: 361 CVVK---SPHG 368
C + PHG
Sbjct: 167 CRAELDLRPHG 177
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 3e-08
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 99 KPYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
+P+ P+ V + CS + L + QL D
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG--TQRGLRWLARQLVD 58
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSP 216
+R E + VC A + A + P V P VG + C + G+
Sbjct: 59 IR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAG 117
Query: 217 PPS--TFWMLEGNRSL 230
P + T +L G + L
Sbjct: 118 PRASLTLTLLRGAQEL 133
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 6e-08
Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 30/199 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLA 64
+QP+ V G + L C PE L + +LVD
Sbjct: 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR--- 60
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSV 123
+ + C + T ++ ++R +P + P C V
Sbjct: 61 ------EPETQPVCFFRCARRTLQAR-GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRV 113
Query: 124 GGD---AVLTVHWKR----LGSAMPEDRMSVLPSRSLQLS-DVRLEDAG-EYVCEAENAV 174
G A LT+ R L L + R ED G + C AE +
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
Query: 175 G--------KISASATLTV 185
SA L
Sbjct: 174 RPHGLGLFENSSAPRELRT 192
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 2e-08
Identities = 51/444 (11%), Positives = 105/444 (23%), Gaps = 76/444 (17%)
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-V 407
+ G+Y + S H S ++ I P P L
Sbjct: 47 IKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLI-----------PDTPEILQLSA 95
Query: 408 NQTANGLTLAWS-RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
+ + + L L W+ R + S + +++++ S T + +
Sbjct: 96 DFSTSTLYLKWNDRGSVFPHRSNVIWEIKV--LRKESMELVKLVTHQTTLNGKDTLHHWS 153
Query: 467 LTVTNLTVGLTYTFLVRAL-NSHGLSAPSPLS---------------------DEIVLRG 504
+ +R ++ S S D+++L G
Sbjct: 154 WASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVG 213
Query: 505 -------TFSEGIFSEGGKGIFSENFPDEGRGESLRRAR-----------QHLQEGGGSL 546
E + S +G +++ E
Sbjct: 214 SDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG 273
Query: 547 IELTEVKP-----------MTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAML 591
+ P + +W + G Y
Sbjct: 274 TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR 333
Query: 592 TVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV 651
E+ L L + Y F L + G+ + V E P
Sbjct: 334 AEAPTNESYQLLFQMLPNQEIYNFTLNAH--NPLGRSQSTILVNITEKVYPHTPTSFKVK 391
Query: 652 LLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPT-LLLTNLSAG 709
+N+T+V L W P + +I + + ++ + L L+
Sbjct: 392 DINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPY 451
Query: 710 IRYSVSL--AATNRAGTGPYSRPA 731
Y+ + + +S
Sbjct: 452 TLYTFRIRCSTETFWKWSKWSNKK 475
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 9e-08
Identities = 38/338 (11%), Positives = 84/338 (24%), Gaps = 53/338 (15%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
S ++ + P D + VG D F C + + P
Sbjct: 185 SDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTN------CPL 238
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL-----TVSGPD 289
+D I ++ VS ++ ++ N G+ + ++
Sbjct: 239 IHLDGENVAIKIRNIS------VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCET 292
Query: 290 PNPPPVILF----GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS 345
+ +I P + L G+
Sbjct: 293 HDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR---------AEAPTNESYQ 343
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L+ + ++ +T +P G + + + YP PT
Sbjct: 344 LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN--------------ITEKVYPHTPTSFK 389
Query: 406 LVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSP 465
+ + + + L+W + ++E+ + S
Sbjct: 390 VKDINSTAVKLSWH-LPGNFAKINFLCEIEIKKS-------NSVQEQRNVTIQGVENSSY 441
Query: 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
++ + L YTF +R S S++
Sbjct: 442 LVALDKLNPYTLYTFRIRCSTETF-WKWSKWSNKKQHL 478
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 66/498 (13%), Positives = 130/498 (26%), Gaps = 98/498 (19%)
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
E + + G ++ TL Q ++ + P L+L L ++ + S F
Sbjct: 58 EITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLY-LKWNDRGSVFP-- 114
Query: 225 EGNRSLIYP--------GDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLG 270
++I+ + V + + T +G + L + + + I C
Sbjct: 115 -HRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYI 173
Query: 271 VNAAGSDLARAS--LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRG 328
N S L S V P P ++ + + S+ C + V
Sbjct: 174 DNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE--KVLSALI 231
Query: 329 EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
++ + ++ + +++ S V + + P
Sbjct: 232 GHTNCPLIHLDGE-NVAIKIRNIS--VSASSGTNVVFTTEDNIFGTVIFAGYP------- 281
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSLLGYQVEMYSRPLPSSSP 446
P P + + +W+ R + Y + S
Sbjct: 282 ---------PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLV--------ESF 324
Query: 447 SGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506
SG TN L L Y F + A N
Sbjct: 325 SGKYVRLKRAEAPTNESY-QLLFQMLPNQEIYNFTLNAHNPL------------------ 365
Query: 507 SEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE- 565
G+ + ++ +VK + ST+VKL+W
Sbjct: 366 --------GRSQSTILV-------------NITEKVYPHTPTSFKVKDINSTAVKLSWHL 404
Query: 566 ---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL--VPF 620
+++ + I + + + L Y+ Y F +
Sbjct: 405 PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYL-VALDKLNPYTLYTFRIRCSTE 463
Query: 621 FGSVDGKPSNLRAVRTLE 638
K SN + T E
Sbjct: 464 TFWKWSKWSNKKQHLTTE 481
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+ PTK +V T L ++W + ++ Y++ Y +G
Sbjct: 22 LYFQGSVSDVPTKLEVVAATPTSLLISWDA----PAVTVRYYRIT-YG-------ETGGN 69
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
+ V + + T++ L G+ YT V A+ L S I +
Sbjct: 70 SPVQEFTVPGSKST--ATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINYR 120
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG-GNNSALINMTV 694
+ S VP + V TS+L+ W P +R Y+I G G NS + TV
Sbjct: 23 YFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETGGNSPVQEFTV 77
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTG-PYSRPALLSLT 736
S T ++ L G+ Y++++ A S+P ++
Sbjct: 78 PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/423 (10%), Positives = 92/423 (21%), Gaps = 74/423 (17%)
Query: 322 SVQW-WRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLRFE 379
S + G + + E +++ ++SW F
Sbjct: 40 SFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFT 99
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
P GPP + + + S + L YS
Sbjct: 100 ------------PFRKAQIGPPEVH--LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSL 145
Query: 440 PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
+ +S + V + L+ TY V+A S
Sbjct: 146 VIWKNS--------SGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSPV 196
Query: 500 IVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTS 559
++ T + + +N +
Sbjct: 197 HCIKTTVENELPPPENIEVSVQNQ-----------------------------------N 221
Query: 560 VKLTWE------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
L W+ ++ + G + + + Y
Sbjct: 222 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 281
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV 673
+ G+ S T P + + S + P + V
Sbjct: 282 LLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFN--IRSLSDSFHIYIGAPKQSGNTPV 339
Query: 674 IRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG----TGPY 727
I+ Y +I + N++ + + + NL Y V A + +
Sbjct: 340 IQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVF 399
Query: 728 SRP 730
S
Sbjct: 400 SDA 402
|
| >1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 31/191 (16%), Positives = 46/191 (24%), Gaps = 31/191 (16%)
Query: 325 WWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
W+ L L E + +G A L + +
Sbjct: 20 EWKMNGPTN--------CSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSA 71
Query: 385 NIGFFR-------------APEPSTYPGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSL 429
+ P P P T+ ++ L L WS +
Sbjct: 72 DNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNH 131
Query: 430 LGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
L Y V D A V PS + + L G++Y VRA
Sbjct: 132 LTYAVN-IWS-------ENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAY 183
Query: 490 LSAPSPLSDEI 500
+ S S
Sbjct: 184 NTTWSEWSPST 194
|
| >3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 396 TYPGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
+ P PT + V ++ L W+ + Y V+ +
Sbjct: 3 SAPAFPTGLSAVLDSSGNTANLTWN-----AAPGANSYNVKR-----------STKSGGP 46
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ +ATN+ S T T + G Y ++V A+++ + S
Sbjct: 47 YTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 14/169 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P ++ G++ + C +G E K P ++ L + +I
Sbjct: 9 WAEP-GSVISWGNSVTIWC---QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPS 64
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSVG 124
+ GRY+C ++ G + +D + V+ Y + V++ + C
Sbjct: 65 MTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ-S 123
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQLSDVRLEDAGEYVC 168
+ T + +A P + +S V G Y C
Sbjct: 124 RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT-----GDGSL 346
P P + P + + + CQ G + +R ++E P
Sbjct: 4 PKPTLWAEP-GSVISWGNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP-- 404
+ +T++ +G Y C +SP G + S L G + P S P P
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT-----GAYSKPTLSALPSPLVTSGK 115
Query: 405 --TLVNQT-ANGLTLAWSRNNQIGSSSLLGYQ 433
TL+ Q+ + T + L +
Sbjct: 116 SVTLLCQSRSPMDTFLLCKERAAHPLLCLRSE 147
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
PT + N T +T++W+ S+++ GY++ PS + V
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTP----PSATITGYRITYT--------PSNGPGEPKELTV 50
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ S +T+T LT G+ Y V AL + S P
Sbjct: 51 PPSSTS--VTITGLTPGVEYVVSVYALKDNQESPPL 84
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIR 711
+ TS+ + W PP + I Y+I N +TV S+ ++ +T L+ G+
Sbjct: 13 VTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVE 67
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y VS+ A P P + + T+G
Sbjct: 68 YVVSVYALKDNQESP---PLVGTQTTGGHH 94
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 644 VPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
+P + V+ T S+ L W P + ++ I IN+TV S +
Sbjct: 2 LPAPKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVPGSERS 56
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
LT L G Y+VS+ S P T+G
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGH---RSNPLSAEFTTGGHH 94
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + T + L L+W+ ++ + ++ Y S A + V
Sbjct: 4 APKNLVVSEVTEDSLRLSWTA----PDAAFDSFMIQ-YQ-------ESEKVGEAINLTVP 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ S +T L G YT + + S P
Sbjct: 52 GSERS--YDLTGLKPGTEYTVSIYGVKGGHRSNPL 84
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 7e-08
Identities = 45/387 (11%), Positives = 96/387 (24%), Gaps = 65/387 (16%)
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
CV+ + F+ P P ++ + L W
Sbjct: 70 RRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ-ISTDQDHFLLTW 128
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
S S L + S + + +N L +L TY
Sbjct: 129 SVALGSPQSHWLSPGDLEFEVVYKRLQDSWED----AAILLSNTSQATLGPEHLMPSSTY 184
Query: 479 TFLVRALNSHG---LSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
VR + G PS S E+ + + + F
Sbjct: 185 VARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDG-------------- 230
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEI---LNTDYIEGVYIYSRGLDPPASVAMLT 592
+ + +WE+ + + G++ A +
Sbjct: 231 ---------------------AAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 593 VLHAGEASGFLVTGLAHYSRYEFFLV--------PFFGSVDGKPSNLRAVRTLECEPSGV 644
+ + ++R+ + + SV + + + +++
Sbjct: 270 EC----SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAE-KHIKSSVNIQMAP 324
Query: 645 PQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLL 703
P L V + S L+W+ + + T++I + ++ L
Sbjct: 325 PSLQ--VTKDGDSYSLRWETMK-MRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381
Query: 704 TNLSAGIRYSVSLAA--TNRAGTGPYS 728
L RY + + G +S
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWS 408
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 625 DGKPSNLRAVRTLECEPSGV--PQLTDPVLLNATSVLLKWKPPPV-------GTHNGVIR 675
S + E S + P +D + A +V+L W PP + +
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWSPPSSLINGETDESSVPELY 58
Query: 676 TYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
Y++++ + L +L + Y + A + G S
Sbjct: 59 GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 7e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 551 EVKPMTSTSVKLTWE--------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGF 602
+ + +V LTW + + +Y Y + ++ GE +
Sbjct: 25 VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNI 84
Query: 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS--GVPQLTDP 650
+ L Y + + S+ G PS TL CEP P+++ P
Sbjct: 85 TLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGP 134
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-06
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
KP + A + L WS + + + V S +G +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDG---KYK 74
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+T+ +L + Y V+A + PS
Sbjct: 75 SVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 15/172 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P ++ G++ + C +G E K G P ++ L + +I
Sbjct: 9 WAEP-GSVISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPS 64
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVG 124
+ GRY+C + AG E +D + V+ Y + V++ + +C
Sbjct: 65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCG-S 123
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCEA 170
G + + S + V C
Sbjct: 124 RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-----L 346
+ P + + +RCQ G Q +R +E P
Sbjct: 4 SKATLWAEP-GSVISRGNSVTIRCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARF 60
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ +T+ +G Y C SP G WS
Sbjct: 61 SIPSMTEHHAGRYRCYYYSPAG---WSE 85
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 16/171 (9%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P + G L C +G E + + LV I
Sbjct: 9 WAEP-GSVITQGSPVTLRC---QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPS 64
Query: 68 SRKTDDGRYQCVVKNV-AGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSV 123
GRY+C + AG ES+D + V+ YI + V++ + +C
Sbjct: 65 ITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCD- 123
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVC 168
A + G ++ P + V Y C
Sbjct: 124 SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PP+ L ++T + L ++W+ +L Y + Y+ P+
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTP----PLGRVLHYWLT-YA-------PASGLGP 50
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V V +T+ +L Y LV A+ + G S
Sbjct: 51 EKSVSVPGARSH--VTLPDLQAATKYRVLVSAIYAAGRSEAV 90
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
S+ + W PP G + Y + +++V + + L +L A +
Sbjct: 19 ETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATK 73
Query: 712 YSVSLAATNRAGTGP 726
Y V ++A AG
Sbjct: 74 YRVLVSAIYAAGRSE 88
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 23/196 (11%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
PS + L G + C P + + + + +
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLP------GNNRK 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
+ ++ NV + P+ C G A+ LTV P V L P P+ +
Sbjct: 51 VYELSNVQEDSQPM---CYSNCPDGQSTAKTFLTVYWT---PERVEL-APLPSWQPVGKQ 103
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
LRCQV G +V RGE+E+ P V + + + +++C +
Sbjct: 104 LTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL 163
Query: 366 PHGSASWSASLRFESP 381
+P
Sbjct: 164 DLRPQGLELFENTSAP 179
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 4e-07
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWK-RLGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
P + ++ CS D + + L + +LS+V ++
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL--PGNNRKVYELSNV--QEDS 61
Query: 165 EYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TF 221
+ +C + G+ +A LTV P V P VG+ C +EG P + T
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTV 121
Query: 222 WMLEGNRSL 230
+L G + L
Sbjct: 122 VLLRGEKEL 130
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 21/192 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C P+ L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKL-LGIETPL------PKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGG 125
S +D + C + + L V P + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEG 112
Query: 126 ---DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG------ 175
A LTV R + + P+ VR + G ++ C E +
Sbjct: 113 GAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 172
Query: 176 --KISASATLTV 185
SA L
Sbjct: 173 FENTSAPYQLQT 184
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
L +L WKPP + TY I V L S L +L Y
Sbjct: 19 LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLHDLVLHTNY 72
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ ++ + PA ++ T+G E
Sbjct: 73 TATVRGLRGPNL---TSPASITFTTGLEA 98
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ P PT+ +N T L W + + Y +++ ++P A
Sbjct: 5 SSGPDGPTQLRALNLTEGFAVLHWKP----PQNPVDTYDIQV-------TAPGAPPLQAE 53
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
A + + +L + YT VR L L++P+ ++
Sbjct: 54 TPGSAVDY-----PLHDLVLHTNYTATVRGLRGPNLTSPASIT 91
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-07
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREV----------GSGPRVNVT 341
++ G + + +A + W+ E+ R +
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 342 GDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
G L+L V +DSG SA+L + + P+ G
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVGFSC---PGVQDSAALTIQESSGPSSG 112
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 8e-06
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------- 151
++ G +D V VF + W G + +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 152 -------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L L V+ +D+G V + + SA LT+Q +
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTIQESS 107
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 4e-07
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------RLRLV 58
+++ + + V AG T +L+C + H + +L W + K R++LV
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKC-QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLV 96
Query: 59 DGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
T +++I + D+G Y C + R + +++ VL P
Sbjct: 97 TSTPHELSISISNVALADEGEYTCSI-FTMPVR-TAKSLVTVLGIP 140
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 5e-07
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPS 150
D TV A +V +C V ++ W A+ ++R+ ++ S
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 151 R----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S+ +S+V L D GEY C + +A + +TV P
Sbjct: 99 TPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIP 140
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-06
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR 327
+++ ++ + + + +++T+ L+CQV+ S+QW
Sbjct: 16 HMDSPDLGTDDDDKAMADINLSQDDSQPW-TSDETVVAGGTVVLKCQVKDHEDSSLQWSN 74
Query: 328 --------GEREVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
GE+ R+ + S+ +++V D GEYTC + + +
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 376 LR-FESPTNPNI 386
+ P P I
Sbjct: 134 VTVLGIPQKPII 145
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 1e-06
Identities = 40/325 (12%), Positives = 75/325 (23%), Gaps = 43/325 (13%)
Query: 195 PSDLRLEVGRDAVFLCGI-----EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
S + +G C I P P W L L G + S
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRL--GAELQPGGRQQRLSDGTQESI-- 62
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-----------DPNPPPVILF 298
+ + +++ T A L + L + L P + +I
Sbjct: 63 --ITLPHLNHTQAFLSCSLN-WGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 299 GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
L + L+ + + S+ + +
Sbjct: 120 WEPGPETHLPTSFTLKSFKSRG---NCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMG 176
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
++ G++ + EP P A L L+W
Sbjct: 177 IWVQAENALGTSMSP-------QLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ ++ P A+ V + + + L Y
Sbjct: 230 EPWQPGLHINQK-CELRHK--------PQRGEASWALVGP-LPLEALQYELCGLLPATAY 279
Query: 479 TFLVRALNSHGLSAPSPLSDEIVLR 503
T +R + S S + LR
Sbjct: 280 TLQIRCIRWPLPGHWSDWSPSLELR 304
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 18/211 (8%)
Query: 9 RVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+ + V GD C PEP ++W+ +RL ++
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
C + + LR P I +S ++ + G
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 125 GDAVLTVH------------WKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172
+ L + S + S+ + L +AEN
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAEN 183
Query: 173 AVGKISASATLTVQMAPIVR-ERPSDLRLEV 202
A+G S L + +V+ E P ++
Sbjct: 184 ALGTSM-SPQLCLDPMDVVKLEPPMLRTMDP 213
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 4e-04
Identities = 34/252 (13%), Positives = 68/252 (26%), Gaps = 19/252 (7%)
Query: 493 PSPLSDEIVLRGTFSEGIFSE--GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELT 550
P + S + S + + L + L+
Sbjct: 47 PGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLS 106
Query: 551 EVKPMTSTSVKLTWEI-----LNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG--FL 603
+ +T++S+ WE L T + SRG ++L + S
Sbjct: 107 CLMNLTTSSLICQWEPGPETHLPTSFTL-KSFKSRGNCQTQGDSILDCVPKDGQSHCSIP 165
Query: 604 VTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLT---DPVLLNATSV 658
L Y ++ G+ L + ++ EP + + + A +
Sbjct: 166 RKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCL 225
Query: 659 LLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM--TVSASTPTLLLTNLSAGIRYSVSL 716
L W+P G H ++ A + + L L Y++ +
Sbjct: 226 QLSWEPWQPGLHINQK--CELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQI 283
Query: 717 AATNRAGTGPYS 728
G +S
Sbjct: 284 RCIRWPLPGHWS 295
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
TS+L+ W G + Y+I G G NS + TV T ++ L G+
Sbjct: 15 ATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVD 69
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEPRLE 744
Y++++ A R E
Sbjct: 70 YTITVYAVTDHKPHADGPHTYHESPISINYRTE 102
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P +V T L ++W G S Y++ Y +G +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDS----GRGSYQYYRIT-Y-------GETGGNSPVQEFT 51
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
V V + T++ L G+ YT V A+ H A P +
Sbjct: 52 VPGPVHT--ATISGLKPGVDYTITVYAVTDHKPHADGPHTYH 91
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-06
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 549 LTEVKPMTSTSVKLTW-EILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
V+ ++ V + +I + V + P V VL A + +
Sbjct: 58 FEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSV 117
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPV 667
+ S + + + K N+ + E + V +N +V + W P
Sbjct: 118 TNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFK-ASEINKKNVTVTWTEP-- 174
Query: 668 GTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY 727
+ Y + G + + + L+ Y+ +AA G
Sbjct: 175 -ETTEGLEGYILYKDGKKVA-----EIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSS 228
Query: 728 S 728
Sbjct: 229 K 229
|
| >2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 18/156 (11%)
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPG 399
+ L + E E + + + + + T + P
Sbjct: 93 LPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVN 152
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P +T+ W+ + L GY + + + + T
Sbjct: 153 PVRDFKASEINKKNVTVTWTEPET--TEGLEGYILYKDGKKVAEIGKDETSYT------- 203
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
L Y F + A S+G +
Sbjct: 204 ---------FKKLNRHTIYNFKIAAKYSNGEVSSKE 230
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 50.5 bits (119), Expect = 2e-06
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ G TA L+C + WK + E+ K + NL I + +
Sbjct: 539 SYRQHFFKHGGTAELKCSQK--SNLARVFWKFQNGVLKAESPKYGLMGRK-NLLIFNLSE 595
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASS 115
D G YQC+ + + V + +++ ++ P +
Sbjct: 596 GDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVV 640
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 48.2 bits (113), Expect = 1e-05
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREV-GSGPRVNVTGDG 344
G P A L+C + V W + P+ + G
Sbjct: 527 GDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRK 586
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404
+L++ ++++ DSG Y C+ + + + E P P P
Sbjct: 587 NLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAK----------HVLEVKVVPKPVVAP 635
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQ 433
TL G +A ++ +S +
Sbjct: 636 TLSVVQTEGSRIAT----KVLVASTKHHH 660
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 2e-05
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 130 TVHWKRLGSAMP--EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA-----VGKISASAT 182
V WK + + ++ ++L + ++ D+G Y C +E V ++ A
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHV 622
Query: 183 LTVQMAPIVRERPSD 197
L V++ P P+
Sbjct: 623 LEVKVVPKPVVAPTL 637
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + + + +AW + Y+V S D +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWES----PQGQVSRYRVTY--------SSPEDGIHELFPAPD 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + L G YT V AL+ S P
Sbjct: 52 GEEDT--AELQGLRPGSEYTVSVVALHDDMESQPL 84
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ S+ + W+ P G + Y++ + + T L L G Y
Sbjct: 14 DVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEY 68
Query: 713 SVSLAATNRAGTGP 726
+VS+ A +
Sbjct: 69 TVSVVALHDDMESQ 82
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PP TL T + L W S+ Y V SP+
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQ-----PSAGATHYLVRC--------SPASPKGEEEERE 55
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V P + + L G Y V++L S +
Sbjct: 56 VQVGRPE--VLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ +V L W+P TH V G V P +LL L G Y
Sbjct: 20 VTPRTVHLTWQPSAGATHYLV--RCSPASPKGEEEE---REVQVGRPEVLLDGLEPGRDY 74
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPE 740
VS+ + + TSGP
Sbjct: 75 EVSVQSLRGPEGSEARGIRARTPTSGPS 102
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--IDFENSK----------RLRLV 58
V +G L L W +++++ K R+RL
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 59 DGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYI 102
+ L I +K D+ Y V G + L+VL KP I
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 117
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNI 386
G+L ++ V KED+ Y V G+ W L+ + P I
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 117
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ + LL W PP Y + + + + L L Y
Sbjct: 19 VTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQ-TQEILLPGGITSHQLLGLFPSTSY 72
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L A P S T+G
Sbjct: 73 NARLQAMWGQS---LLPPVSTSFTTGGLR 98
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 16/102 (15%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
+ P T L W+ GY + ++
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTE----PPVRPAGYLLSFHT----------PGGQTQE 51
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ + + S + L +Y ++A+ L P S
Sbjct: 52 ILLPGGITS--HQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 45/134 (33%)
Query: 277 DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR------GEGSVQWWRGER 330
D A SL+++ P+ G A L C+ G ++W
Sbjct: 1 DFA-RSLSITTPEE--MIEKAKG---------ETAYLPCKFTLSPEDQGPLDIEWLISPA 48
Query: 331 EVGSGPRVNVT---------------------------GDGSLVLTDVTKEDSGEYTCVV 363
+ +V + GD S+ +T++ D G Y C V
Sbjct: 49 DNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 108
Query: 364 KSPHGSASWSASLR 377
K G A+ L
Sbjct: 109 KKAPGVANKKIHLV 122
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 31/122 (25%)
Query: 8 FRVQPKSQRVAA--GDTALLEC-------------------GPPRGHPEPTLVWKKNGHP 46
+ + + G+TA L C + ++
Sbjct: 6 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKI 65
Query: 47 IDFENSK---RLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
D R+ ++ + + + +D G YQC VK G L VL
Sbjct: 66 YDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-IHLVVL 124
Query: 98 VK 99
VK
Sbjct: 125 VK 126
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+ +++++L D G Y C+ + A G + L V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG 342
S P + P + +P LRC R + E +
Sbjct: 14 DKGSHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIF 72
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
S ++ VT +G YTC PH WSA
Sbjct: 73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA 104
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 45/305 (14%), Positives = 65/305 (21%), Gaps = 39/305 (12%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR 151
+ + KP++ P V + C + +
Sbjct: 17 SHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRHRFN-NFMLYKEDRIHIPIFHGRIFQE 74
Query: 152 SLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQMA---PIVRERPSDLRLEVG 203
S +S V AG Y C + S + V P + P L ++ G
Sbjct: 75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSG 133
Query: 204 RDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
+ C F EG + I + A
Sbjct: 134 ERVILQC--WSDIMFEHFFLHKEGISKDPS-----RLVGQIHDGVSKANFSIGPMMLALA 186
Query: 263 PLIIL----CLGVNAAGSDLARAS-----LTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
C G A + V+GP P GP + L
Sbjct: 187 -----GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP---KVQAGESVTL 238
Query: 314 RCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTD---VTKEDSGEYTCVVKSPHGSA 370
C R + E V D G Y C H
Sbjct: 239 SCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPY 298
Query: 371 SWSAS 375
WS
Sbjct: 299 EWSDP 303
|
| >1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PT QT + +TL+W+ + + + GY V +G T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAST--DNVGVTGYDVY-----------NGTALATT--- 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSP 495
V T++ L +YTF V+A ++ G +SA S
Sbjct: 48 ----VTGTTATISGLAADTSYTFTVKAKDAAGNVSAASN 82
|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
Score = 48.1 bits (113), Expect = 1e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 308 RSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
S L C + + W E S + + + L + ++T + G Y C
Sbjct: 515 NSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCE 570
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+ P S V L C P G +K R D L I
Sbjct: 12 QALP-SSLVPLEKPVTLRCQGPPGVDL--YRLEKLSSS---------RYQDQAVLFIPAM 59
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSVGG 125
+++ GRY+C +N + +D + V + + VS+ + +C
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TR 118
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
+ G P S + V +G Y C
Sbjct: 119 YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P P + P + +PL LRCQ G V +R E+ S + L + +
Sbjct: 7 PKPSLQALP-SSLVPLEKPVTLRCQ--GPPGVDLYRLEKLSSSRYQD----QAVLFIPAM 59
Query: 352 TKEDSGEYTCVVKSPHGSASWSASL 376
+ +G Y C ++ + S L
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQL 84
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 1e-05
Identities = 42/334 (12%), Positives = 81/334 (24%), Gaps = 45/334 (13%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
S ++ P D + G + C + + P
Sbjct: 190 SDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIG------NTLRPL 243
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-----ASLTVSGPD 289
+ I + VS + II + G+ + +S
Sbjct: 244 IHLYGQTVAIH------ILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLT 349
+ +I + L + + G+ V L +
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLF-----ESISGKSAVFHRIEGLTNETYRLGVQ 352
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
++ +T ++P G A + + P PT + +
Sbjct: 353 MHPGQEIHNFTLTGRNPLGQAQSAVVIN--------------VTERVAPHDPTSLKVKDI 398
Query: 410 TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469
+ +T +W + L Q+E+ + + + V
Sbjct: 399 NSTVVTFSWY-LPGNFTKINLLCQIEICKA-------NSKKEVRNATIRGAEDSTYHVAV 450
Query: 470 TNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
L YTF VR +S S SDE
Sbjct: 451 DKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 645 PQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIVGG-----GNNSALINMTVSAS 697
P+L+ + + T S+ L W+ PP G + + + + + V +
Sbjct: 10 PRLSQLSVTDVTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ +L +L +G YS++L + + P
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKAD---SIQGTARTLSGP 109
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
++ ++ + T + L L W + + + + + P +
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNW----EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
V S + +L G Y+ + L +
Sbjct: 65 VPGTRHS--AVLRDLRSGTLYSLTLYGLRGPHKADS 98
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIY-----SRGLDPPASVAMLTVLHAGEASGFLVT 605
V +T++S++L WE + + + S P + ++ G ++
Sbjct: 16 SVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLR 75
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
L + Y L G A RTL SG
Sbjct: 76 DLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSGPSSG 112
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 398 PGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P PP ++ + ++ L L W+ N I S +L Y ++ + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWT-NPSIKSVIILKYNIQYR--------TKDASTWSQI 154
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T TV +L Y F +R + G S S+E
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 202
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 19/180 (10%), Positives = 48/180 (26%), Gaps = 13/180 (7%)
Query: 556 TSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
++ W+ ++E + A S + ++
Sbjct: 20 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADC---KAKRDTPTSCTVDYSTVYFVNI 76
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHN 671
E ++ ++ S+ + P + + L W P + +
Sbjct: 77 EVWVE-AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--S 133
Query: 672 GVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+I Y I S + +++ + + +L Y + G G +S
Sbjct: 134 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 193
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 28/115 (24%)
Query: 103 IRGPKDTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSA--------------MPED 143
++ P + C + V + W R G +
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 144 RMSVLPSR--------SLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTVQMAP 189
R+ + +R SL++ +R+ED G Y C G S L V P
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 24/118 (20%)
Query: 7 EFRVQ-PKSQRVAAGDTALLEC---GPPRGHPEPTLV-WKKNGHP-----------IDFE 50
+ VQ P GD+ L C P + + W ++G +
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 51 NSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 328 GEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTC-VVKSPHGSASWSASLR 377
+R R+ + SL + + ED G YTC V P GS S LR
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 30/232 (12%), Positives = 60/232 (25%), Gaps = 47/232 (20%)
Query: 10 VQPKSQRVAAGDTALLEC----GPPRGHPEPTLVW---------------KKNGHPIDFE 50
+ +Q D + C P + W H F
Sbjct: 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFR 67
Query: 51 NSKRLRLVDGTN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
+ + L + + + G Y+C V + T L V+ P
Sbjct: 68 PGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTV-QLEVVASPASRLLL 126
Query: 107 KDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAMPEDRMSVLPSRS----------- 152
+ + C G +A+ + W++ P +
Sbjct: 127 DQVGMKENEDKYM-CESSGFYPEAI-NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184
Query: 153 -----LQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQMAPIVRERPSD 197
L+L+ + + Y C +A + ++ TLT + +D
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTD 236
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 24/179 (13%), Positives = 47/179 (26%), Gaps = 40/179 (22%)
Query: 300 PANQTLPLRSEARLRCQVRGEG-------SVQWWRGEREVGSG---------------PR 337
Q PL + C + + W+ P
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 338 VNVT------GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL-RFESPTNPNIGFFR 390
V+ GD SL L + E++GEY C V A + L SP +
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASR------ 123
Query: 391 APEPSTYPGPPTKPTLVNQTANG----LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS 445
+ + +++ + + W + Q + + + + +
Sbjct: 124 -LLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMD 181
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
SL+L ++LE+AGEY CE K + L V +P R + ++ + ++C
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMK-ENEDKYMCE 141
Query: 212 IEG-SPPPSTF-WMLEGN 227
G P W +
Sbjct: 142 SSGFYPEAINITWEKQTQ 159
|
| >2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-05
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
V +T V ++ATS+ L WK + TY+I V G +S ++ S P
Sbjct: 8 AIQVFDVT-AVNISATSLTLIWKVSD--NESSSNYTYKIHVAGETDS----SNLNVSEPR 60
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
++ L + Y++++ G P L + + P P
Sbjct: 61 AVIPGLRSSTFYNITVCPVLGDIEGT---PGFLQVHTPPVP 98
|
| >2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-05
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ T VN +A LTL W ++ SSS Y++ + S+ +
Sbjct: 4 GSSGAIQVFDVTAVNISATSLTLIWKVSDN-ESSSNYTYKIHVAGETDSSNLNVSEPR-- 60
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ L Y V + P L
Sbjct: 61 -------------AVIPGLRSSTFYNITVCPVLGDIEGTPGFLQ 91
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 29/127 (22%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECG--PPRGHPEPTLVWKK-----------NGHPIDFE 50
+FRV + A GD A L C P + + W + NG D E
Sbjct: 5 GQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAE 64
Query: 51 NSKRLR-----LVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK- 99
+ R L + L IQ+ R +D+G Y C ++ + E A + + V+
Sbjct: 65 QAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE---AAVELKVED 121
Query: 100 PYIIRGP 106
P+ P
Sbjct: 122 PFYWINP 128
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 39/129 (30%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWRG------- 328
V GP P+ + EA L C++ + V W+R
Sbjct: 5 GQFRVIGP---GHPI--------RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53
Query: 329 ----------EREVGSGPRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
E+ R + G +L + +V D G YTC +
Sbjct: 54 LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113
Query: 373 SASLRFESP 381
+ L+ E P
Sbjct: 114 AVELKVEDP 122
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 41/127 (32%)
Query: 110 TVSASSIIVFECSVGGDAVL-------------TVHWKRLGSAMP--------------- 141
I VG +A L V W R +
Sbjct: 10 IGPGHPIRAL---VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQA 66
Query: 142 ---EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
R +L +L++ +VR D G Y C + + A+ L V+ P
Sbjct: 67 PEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYW 125
Query: 193 ERPSDLR 199
P R
Sbjct: 126 INPGRSR 132
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
P V + +T +L+C L + + + V N +I
Sbjct: 11 LLAHP-GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69
Query: 68 SRKTDDGRYQC---VVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFEC 121
+ G Y+C V + +D + V++ Y + TV A + C
Sbjct: 70 MTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSC 129
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQL--SDVRLEDAGEYVC 168
S + H R G A + + + Q G Y C
Sbjct: 130 S-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG-----SL 346
P +L P + L+C E R+ +
Sbjct: 7 RKPSLLAHP-GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANF 65
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
++ +T++ +G Y C H SA
Sbjct: 66 SISRMTQDLAGTYRCYGSVTHSPYQVSA 93
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-05
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 14 SQRVAAGDTALLEC--GPPRGHPEPTLVWKK---------------NGHPIDFENSKRLR 56
+V G A L C P + W K + + ++ S R +
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 57 LVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L N L I++ D G Y C ++ G L++ +K
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ-FPGLMNDKKLELKLDIK 109
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 9e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 312 RLRCQVRGEGSVQWWRGEREV--GSGPRVNVTGD-----GSLVLTDVTKEDSGEYTCVVK 364
+ C + ER V R + GD SL++ +VT +D G Y C ++
Sbjct: 33 KGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 92
Query: 365 SP 366
P
Sbjct: 93 FP 94
|
| >3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 8e-05
Identities = 23/92 (25%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 288 PDPNPPPVILFGPAN-QTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSL 346
N V F P + P R E E+ D +L
Sbjct: 45 APANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQ---------DATL 95
Query: 347 VLTDVTKEDSGEYTC-VVKSPHGSASWSASLR 377
L +T ED G YTC P GS LR
Sbjct: 96 ALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
|
| >3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 4e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTV 185
+ + + +D + L +L L + +ED G Y CE G + L V
Sbjct: 73 LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
|
| >1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 25/114 (21%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHP---------------EPTLVWKKNGHPIDFENS 52
PK+ + +G L+ C P ++ + +D
Sbjct: 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFR 65
Query: 53 KRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
R L+ L ++D + D G Y + R V V
Sbjct: 66 GRAELMGNMDHKVCN-LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 16 RVAAGDTALLEC----------------GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD 59
+ G L C P + TL+W NGH + ++ S R L
Sbjct: 8 KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWT-NGHRVTYQKSSRYNLKG 66
Query: 60 GTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ L I++S ++D G Y C V+ + G + VKP
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVE-IPGWFNDQKVTFSLQVKP 111
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 25/81 (30%)
Query: 311 ARLRCQVRGEGS---VQWWRG-----------------EREVGSGPRVNVT-----GDGS 345
L C W RG R N+ GD S
Sbjct: 15 VTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVS 74
Query: 346 LVLTDVTKEDSGEYTCVVKSP 366
L + + + DSG Y C V+ P
Sbjct: 75 LTIENSVESDSGLYCCRVEIP 95
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 34/166 (20%)
Query: 284 TVSGPDPNPPPVILFGPA-NQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGSG- 335
+ P V LF P TL + + C V E W+ EV +
Sbjct: 239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK 298
Query: 336 --PRVNVTGDGS-----LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
PR L + + EY C V + A ++
Sbjct: 299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE--- 355
Query: 389 FRAPEPSTYPGPPTKPTLVNQTA-----------NGLTLAWSRNNQ 423
P Y PP++ L + + + W N Q
Sbjct: 356 -----PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 396
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 29/119 (24%)
Query: 10 VQPKSQRVAAGDTALLEC------------------GPPRGHPEPTLVWKKNGHPIDFEN 51
+ A G L C P G ++ G P E
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEV 63
Query: 52 ---SKRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKP 100
+R++ V DG+ + I + +D+G + C VKN T V L V K
Sbjct: 64 GTFKERIQWVGDPSWKDGS-IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
DGS+V+ ++ D+G +TC VK+P ++ +
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 40/342 (11%), Positives = 88/342 (25%), Gaps = 63/342 (18%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P K + N L W+R++ S + + + T W++++
Sbjct: 6 SPQKVEVDIIDDN-FILRWNRSD--ESVGNVTFSFDYQ-----------KTGMDNWIKLS 51
Query: 460 ----TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
+ L V +RA S+ + R
Sbjct: 52 GCQNITSTKCNFSSLKLNVYEEIKLRIRA-EKENTSSWYEVDSFTPFRKA---------- 100
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
+ HL+ +++ + T + W + + +
Sbjct: 101 ---------------QIGPPEVHLEAEDKAIV----IHISPGTKDSVMWALDGLSFTYSL 141
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF--GSVDGKPSNLRA 633
I+ + S + L+ + Y + G S +
Sbjct: 142 VIWKNSSG-------VEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 194
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
++T E P V + + +LKW V + + N
Sbjct: 195 IKT-TVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253
Query: 694 VSA-----STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +T + N+ Y + + A++ T +S
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 295
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 42/293 (14%), Positives = 72/293 (24%), Gaps = 40/293 (13%)
Query: 106 PKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMSVLPSRS---------LQ 154
D I C V G + + W G M D + ++ L
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT 75
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLC 210
LS Y C+ S P RPS L + + C
Sbjct: 76 LSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135
Query: 211 GIEGSPPPSTF----WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP--L 264
+ P W + P + + + + + + V
Sbjct: 136 LVVDLAPSKGTVQLTWSRASGK----PVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGE 191
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----E 320
C + S T + P V F R + L C ++ +
Sbjct: 192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPG-SRDKRTLACLIQNFMPED 250
Query: 321 GSVQWWRGEREVGSGPRVNVT----GDGSLVLT---DVTKED--SGE-YTCVV 363
SVQW E ++ + +VT+ + + + C
Sbjct: 251 ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA 303
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 22/110 (20%)
Query: 12 PKSQRVAAGDTALLECG-PPRGHPEPTLVWKK---------------NGHPIDFENSKRL 55
+ + AG L C + W NG+ + + + R
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 56 RLVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+L + L I+++ D G Y CVV+ + G D +L V +
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVE-IPGAFHFVDYMLEVKPEL 112
|
| >2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 627 KPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPP---PVGTHNGV-IRTYQIIV 681
S+ TL P PQ +T + ++ + W+PP P G NG + Y +
Sbjct: 3 SGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA 62
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734
G + +I T A + + L L + V++ + G S A +
Sbjct: 63 KGQRVAEVIFPT--ADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVP 113
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 11/135 (8%)
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
+ L+ Y + + F + + G P + VL + +
Sbjct: 57 FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII-GPPGMQVEVLADCLHMRFLAP 115
Query: 664 PPPVGTHNGVIR------TYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717
++ TY + ++ +L NL Y V +
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYW--KQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 718 A--TNRAGTGPYSRP 730
+R G +S P
Sbjct: 174 GFLPDRNKAGEWSEP 188
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV-----NVTGDGSL 346
P +L P + L+C E + + + +
Sbjct: 6 RKPSLLAHP-GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANF 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ + ++ +G Y C H SA
Sbjct: 65 SIGPMMQDLAGTYRCYGSVTHSPYQLSA 92
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 8e-04
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 11/170 (6%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
P V + +T +L+C L + + V N +I
Sbjct: 12 AHP-GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMM 70
Query: 70 KTDDGRYQC---VVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSV 123
+ G Y+C V + +D + V+ Y + TV A + CS
Sbjct: 71 QDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCS- 129
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQ--LSDVRLEDAGEYVCEA 170
+ H R G A + + + Q G Y C
Sbjct: 130 SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFG 179
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 7e-04
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 15/146 (10%)
Query: 358 EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLA 417
V++ + S + P + EP P +V+ L L+
Sbjct: 80 YMAIWVQAENMLGSSESPKLCLDPMDVVK-----LEPPMLQALDIGPDVVSHQPGCLWLS 134
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477
W ++ + A T V + L
Sbjct: 135 WKPWKPSEYMEQE-CELRYQPQ--------LKGANWTLVFH-LPSSKDQFELCGLHQAPV 184
Query: 478 YTFLVRALNSHGLSAPSPLSDEIVLR 503
YT +R + S SP S + LR
Sbjct: 185 YTLQMRCIRSSLPGFWSPWSPGLQLR 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 977 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 100.0 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 99.98 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.97 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.97 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.97 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.97 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.97 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.97 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.97 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.97 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.97 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.97 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.97 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.97 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.97 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.97 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.97 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.96 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.96 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.96 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.96 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.96 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.96 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.96 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.96 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.96 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.96 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.96 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.95 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.95 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.95 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.95 | |
| 3lb6_C | 380 | IL-13, interleukin-13 receptor subunit alpha-2; cy | 99.95 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.95 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.95 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.95 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.94 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.94 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.94 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.94 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.94 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.94 | |
| 2dtg_E | 897 | Insulin receptor; IR ectodomain, X-RAY crystallogr | 99.94 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.94 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.94 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.94 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.94 | |
| 1cfb_A | 205 | Drosophila neuroglian; neural adhesion molecule; H | 99.93 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.93 | |
| 3se4_A | 414 | Interferon alpha/beta receptor 1; type I interfero | 99.93 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.93 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.93 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.93 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.93 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.93 | |
| 3p4l_A | 211 | Neogenin; iron homeostasis, hemojuvelin receptor, | 99.93 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.93 | |
| 3s98_A | 306 | Interferon alpha/beta receptor 1; human, type I in | 99.92 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.91 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.91 | |
| 3bpo_C | 314 | Interleukin-13 receptor alpha-1 chain; IL4, IL13, | 99.91 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.91 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.91 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.91 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.91 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.91 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.91 | |
| 2vkw_A | 209 | Neural cell adhesion molecule 1,140 kDa isoform; a | 99.91 | |
| 3se4_A | 414 | Interferon alpha/beta receptor 1; type I interfero | 99.9 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.9 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.9 | |
| 3f7q_A | 234 | Integrin beta-4, GP150; hemidesmosome, cell adhesi | 99.9 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.9 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.9 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.9 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.9 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.89 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.89 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.89 | |
| 2ibg_A | 214 | CG9211-PA, GH03927P; IHOG, fibronectin type III, p | 99.89 | |
| 1cfb_A | 205 | Drosophila neuroglian; neural adhesion molecule; H | 99.89 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.88 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.88 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.88 | |
| 2gys_A | 419 | Cytokine receptor common beta chain; dimer of inte | 99.88 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.88 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.88 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.88 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.88 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.88 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.88 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.88 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.88 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.87 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.87 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.87 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.87 | |
| 3lpw_A | 197 | A77-A78 domain from titin; intracellular FNIII-tan | 99.87 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.87 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.87 | |
| 2ibg_A | 214 | CG9211-PA, GH03927P; IHOG, fibronectin type III, p | 99.86 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.86 | |
| 2gee_A | 203 | Hypothetical protein; fibronectin, EIIIB, cancer, | 99.86 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.86 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.86 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.86 | |
| 1bqu_A | 215 | Protein (GP130); cytokine receptor, glycoprotein 1 | 99.86 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.86 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.86 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.86 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.86 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.86 | |
| 3f7q_A | 234 | Integrin beta-4, GP150; hemidesmosome, cell adhesi | 99.86 | |
| 2ha1_A | 201 | Fibronectin; beta sandwich, protein-protein comple | 99.86 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.86 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.86 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.86 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.85 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.85 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.85 | |
| 3p4l_A | 211 | Neogenin; iron homeostasis, hemojuvelin receptor, | 99.85 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.85 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.85 | |
| 3fl7_A | 536 | Ephrin receptor; ATP-binding, kinase, nucleotide-b | 99.85 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.85 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.84 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.84 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.84 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.84 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.84 | |
| 3n06_B | 210 | PRL-R, prolactin receptor; PH dependence, hematopo | 99.84 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.84 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.84 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.84 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.84 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.84 | |
| 2vkw_A | 209 | Neural cell adhesion molecule 1,140 kDa isoform; a | 99.84 | |
| 3fl7_A | 536 | Ephrin receptor; ATP-binding, kinase, nucleotide-b | 99.83 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.83 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.83 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.83 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.83 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.83 | |
| 1qr4_A | 186 | Protein (tenascin); fibronectin type-III, heparin, | 99.83 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.83 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.83 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.83 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.83 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.83 | |
| 1cd9_B | 215 | G-CSF-R, protein (G-CSF receptor); class1 cytokine | 99.83 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.83 | |
| 3lpw_A | 197 | A77-A78 domain from titin; intracellular FNIII-tan | 99.82 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.82 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.82 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.82 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.82 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.81 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.81 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.81 | |
| 2gee_A | 203 | Hypothetical protein; fibronectin, EIIIB, cancer, | 99.81 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.81 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.81 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.8 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.8 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.8 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.8 | |
| 1bqu_A | 215 | Protein (GP130); cytokine receptor, glycoprotein 1 | 99.8 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.8 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.8 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.8 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.8 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.8 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.79 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.79 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.79 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.79 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.79 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.78 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.78 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.78 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.78 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.78 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.78 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.78 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.78 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.78 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.78 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.78 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.78 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.78 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.78 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.78 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.78 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.78 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.78 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.78 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.77 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.77 | |
| 2ha1_A | 201 | Fibronectin; beta sandwich, protein-protein comple | 99.77 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.77 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.77 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.77 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.77 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.77 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.77 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.77 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.76 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.76 | |
| 1qr4_A | 186 | Protein (tenascin); fibronectin type-III, heparin, | 99.76 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.76 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.76 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.76 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.76 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.76 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.76 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.76 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.76 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.76 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.75 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.75 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.75 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.75 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.75 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.75 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.74 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.74 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.74 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.74 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.74 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.74 | |
| 3e0g_A | 483 | Leukemia inhibitory factor receptor; IG domain, cy | 99.74 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.74 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.74 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.74 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.74 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.74 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.73 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.73 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.73 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.73 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.73 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.73 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.73 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.73 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.73 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.73 | |
| 3lqm_A | 201 | Interleukin-10 receptor subunit beta; IL-10R2, com | 99.73 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.72 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.72 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.72 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.72 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.72 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.72 | |
| 3s98_A | 306 | Interferon alpha/beta receptor 1; human, type I in | 99.72 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.72 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.72 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.71 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.71 | |
| 2ed9_A | 124 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.71 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.71 | |
| 1cd9_B | 215 | G-CSF-R, protein (G-CSF receptor); class1 cytokine | 99.71 | |
| 3n06_B | 210 | PRL-R, prolactin receptor; PH dependence, hematopo | 99.71 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.71 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.71 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.71 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.7 | |
| 4go6_B | 232 | HCF C-terminal chain 1; tandem fibronectin repeat, | 99.7 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.7 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.7 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.7 | |
| 2dbj_A | 124 | Proto-oncogene tyrosine-protein kinase MER precurs | 99.7 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.7 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.7 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.7 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.69 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.69 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.69 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.69 | |
| 2dtg_E | 897 | Insulin receptor; IR ectodomain, X-RAY crystallogr | 99.69 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.69 | |
| 1axi_B | 236 | HGHBP, growth hormone receptor; complex (hormone-r | 99.69 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.69 | |
| 1wj3_A | 117 | KIAA1496 protein; beta sandwich, PANG, structural | 99.69 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.69 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.69 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.69 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.69 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.68 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.68 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.68 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.68 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.68 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.68 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.68 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.68 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.68 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.68 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.68 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.67 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.67 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.67 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.67 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.67 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.67 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.66 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.66 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.66 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.66 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.66 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.66 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.66 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.66 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.66 | |
| 2ee2_A | 119 | Contactin-1; neural cell surface protein F3, glyco | 99.66 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.66 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.66 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.65 | |
| 1wfo_A | 130 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.65 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.65 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.65 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.65 | |
| 3e0g_A | 483 | Leukemia inhibitory factor receptor; IG domain, cy | 99.65 | |
| 3n1f_C | 102 | Cell adhesion molecule-related/DOWN-regulated BY; | 99.64 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.64 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.64 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.64 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.64 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.64 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.64 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.64 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.64 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.63 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.63 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.63 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.63 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.63 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.63 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.63 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.63 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.63 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.63 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.63 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.62 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.62 | |
| 2edx_A | 134 | Protein tyrosine phosphatase, receptor type, F; LA | 99.62 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.62 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.62 | |
| 4doh_B | 206 | Interleukin-20 receptor subunit beta; IL10 family | 99.62 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.62 | |
| 1x5h_A | 132 | Neogenin; RGM binding, fibronectin type III domain | 99.61 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.61 | |
| 3qt2_A | 317 | Interleukin-5 receptor subunit alpha; cytokine typ | 99.61 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.61 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.61 | |
| 1eer_B | 227 | Epobp, erythropoietin receptor; signal transductio | 99.61 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.61 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.61 | |
| 1uen_A | 125 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.6 | |
| 4doh_R | 221 | Interleukin-20 receptor subunit alpha; IL10 family | 99.6 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.6 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.6 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.6 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.6 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.6 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.59 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.59 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.59 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.59 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.59 | |
| 1x4y_A | 114 | Biregional cell adhesion molecule-related/DOWN- re | 99.59 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.58 | |
| 2djs_A | 108 | Ephrin type-B receptor 1; tyrosine-protein kinase | 99.58 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.58 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.58 | |
| 2dlh_A | 121 | Receptor-type tyrosine-protein phosphatase delta; | 99.58 | |
| 2e7h_A | 109 | Ephrin type-B receptor 4; FN3 domain, tyrosine- pr | 99.58 | |
| 2ede_A | 114 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.58 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.58 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.58 | |
| 1x5i_A | 126 | Neogenin; RGM binding, fibronectin type III domain | 99.58 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.57 | |
| 1x5f_A | 120 | Neogenin; RGM binding, fibronectin type III domain | 99.57 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.57 | |
| 3g9v_A | 211 | Interleukin 22 receptor, alpha 2; cytokine, cytoki | 99.56 | |
| 1wfn_A | 119 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.56 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.56 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.56 | |
| 1va9_A | 122 | DOWN syndrome cell adhesion molecule like- protein | 99.56 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.56 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.55 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.55 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.55 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.55 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.55 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.55 | |
| 1x5l_A | 111 | Ephrin type-A receptor 8; FN3 domain, structural g | 99.55 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.55 | |
| 3bpo_C | 314 | Interleukin-13 receptor alpha-1 chain; IL4, IL13, | 99.55 | |
| 3v6o_A | 206 | Leptin receptor; receptor-antibody complex, cytoki | 99.54 | |
| 3lqm_A | 201 | Interleukin-10 receptor subunit beta; IL-10R2, com | 99.54 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.54 | |
| 1ujt_A | 120 | KIAA1568 protein; fibronectin type III domain, str | 99.54 | |
| 4go6_B | 232 | HCF C-terminal chain 1; tandem fibronectin repeat, | 99.54 | |
| 1x3d_A | 118 | Fibronectin type-III domain containing protein 3A; | 99.53 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.53 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.53 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.53 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.53 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.52 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.52 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.52 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.52 | |
| 2ed7_A | 119 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.52 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.52 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.52 | |
| 2edd_A | 123 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.52 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.52 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.52 | |
| 1x5g_A | 116 | Neogenin; RGM binding, fibronectin type III domain | 99.51 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.51 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.51 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.51 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.51 | |
| 2crm_A | 120 | Fibronectin type-III domain containing protein 3A; | 99.51 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.51 | |
| 2haz_A | 105 | N-CAM 1, neural cell adhesion molecule 1; fibronec | 99.5 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.49 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.49 | |
| 1x5z_A | 115 | Receptor-type tyrosine-protein phosphatase delta; | 99.49 | |
| 2edx_A | 134 | Protein tyrosine phosphatase, receptor type, F; LA | 99.49 | |
| 2ed8_A | 106 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.48 | |
| 2gys_A | 419 | Cytokine receptor common beta chain; dimer of inte | 99.48 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.48 | |
| 2edy_A | 103 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.48 | |
| 1x5j_A | 113 | Neogenin; RGM binding, fibronectin type III domain | 99.48 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.47 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.47 | |
| 2yrz_A | 118 | Integrin beta-4; GP150, CD104 antigen, structural | 99.47 | |
| 1axi_B | 236 | HGHBP, growth hormone receptor; complex (hormone-r | 99.46 | |
| 1x5a_A | 107 | Ephrin type-A receptor 1; tyrosine-protein kinase | 99.46 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.46 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.45 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.45 | |
| 2dm4_A | 108 | Sortilin-related receptor; beta-sandwich, sorting | 99.45 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.45 | |
| 2dn7_A | 107 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.44 | |
| 3t04_D | 103 | Monobody 7C12; engineered binding protein, antibod | 99.44 | |
| 3lb6_C | 380 | IL-13, interleukin-13 receptor subunit alpha-2; cy | 99.44 | |
| 1v5j_A | 108 | KIAA1355 protein, RSGI RUH-008; FN3 domain, human | 99.44 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=427.91 Aligned_cols=445 Identities=24% Similarity=0.424 Sum_probs=343.3
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-.|.|...+.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+......++.... .++|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~pP~f~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (570)
T 3b43_A 4 EPPYFIEPLEHVEAAIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82 (570)
T ss_dssp CCCEEEECCCCEEECTTSCEEEEEEE-ESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCcceEECCceEEcCCCEEEEEEEE-ccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence 45677777888999999999999999 89999999999999999554433443332 25799999999999999999999
Q ss_pred cCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEE---eccceEEE
Q psy574 83 VAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSV---LPSRSLQL 155 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~---~~~~~L~I 155 (977)
..|...+ .+.|.|. .+|.+...+.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... ++.. ....+|.|
T Consensus 83 ~~g~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i 161 (570)
T 3b43_A 83 SVGAVAS-SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161 (570)
T ss_dssp TTEEEEE-EEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEE
T ss_pred CCceEEE-EEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEE
Confidence 9887554 3566665 3678888888889999999999999999999999999999988654 3322 23468999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeec
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~ 232 (977)
.++..+|+|.|+|.|.|..|.....+.|.|. .+|.+...|....+.+|+.++|.|.+.|.|.+.+.|+|++..+.
T Consensus 162 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~-- 239 (570)
T 3b43_A 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-- 239 (570)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECC--
T ss_pred CcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECc--
Confidence 9999999999999999999998888888876 46788888888899999999999999999999999999998763
Q ss_pred CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC-ceeecCCCcE
Q psy574 233 PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTLPLRSEA 311 (977)
Q Consensus 233 ~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~-~~~v~~g~~~ 311 (977)
...++.+... .+...|.|.+++.+|+|.|+ |.|.|..|....++.|.|.. +|.+...+. ...+..|+.+
T Consensus 240 ---~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~v~~g~~~ 309 (570)
T 3b43_A 240 ---PGGNYKMTLV-ENTATLTVLKVTKGDAGQYT-CYASNVAGKDSCSAQLGVQE-----PPRFIKKLEPSRIVKQDEHT 309 (570)
T ss_dssp ---TTSSEEEEEE-TTEEEEEESSBCGGGCEEEE-EEEEETTEEEEEEEEECCBC-----CCEEEECCCSBCCEESSCEE
T ss_pred ---CCCcEEEEEE-CCEEEEEEcccCcccCEEEE-EEEECCCCcEEEEEEEEeec-----CCcccccCCCccEEcCCCcE
Confidence 2344444332 23458999999999999999 99999999999899999887 677665543 3457899999
Q ss_pred EEEEEEcc--CceEEEEECCEEcCCCCcEEEe---cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~---~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.|.|.+.+ .+.+.|++++..+....++.+. ..+.|.|.++...|+|.|+|.|.|..|....++.|.|..++....
T Consensus 310 ~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~ 389 (570)
T 3b43_A 310 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389 (570)
T ss_dssp EEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECS
T ss_pred EEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeec
Confidence 99999999 6789999999999877665543 234699999999999999999999999999999999987652211
Q ss_pred cccCCCCC-CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcC
Q psy574 387 GFFRAPEP-STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSP 465 (977)
Q Consensus 387 ~~~~~~~~-~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 465 (977)
.+.. ....+....+.|...+.....+.|....... ..-..|.+. ......
T Consensus 390 ----~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l-~~~~~~~~~------------------------~~~~~~ 440 (570)
T 3b43_A 390 ----KPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-RSGKKYKIM------------------------SENFLT 440 (570)
T ss_dssp ----CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEEC-CSSSSEEEE------------------------EETTEE
T ss_pred ----CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEEC-cCCCCEEEE------------------------EcCCEE
Confidence 1110 1122223333444444444556665543200 000112221 111224
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.+.|.++.......|.|.|.|..|..
T Consensus 441 ~L~i~~v~~~D~G~Y~C~A~N~~G~~ 466 (570)
T 3b43_A 441 SIHILNVDSADIGEYQCKASNDVGSD 466 (570)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred EEEECCCChhhCEEEEEEEEECCCeE
Confidence 56788888888899999999998864
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=428.97 Aligned_cols=447 Identities=22% Similarity=0.360 Sum_probs=355.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+.|.|...+.++.+.+|++++|.|.+ .|.|.+.|.|+|||+.+......+.... ..++|.|.+++.+|+|.|+|.|.|
T Consensus 100 ~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 178 (570)
T 3b43_A 100 LPPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178 (570)
T ss_dssp CCCEESSCCCCEEEETTSCEEEEEEE-ESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCcccccCCCeEecCCCeEEEEEEE-ccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEe
Confidence 35677777888999999999999999 7889999999999999954433333333 246899999999999999999999
Q ss_pred cCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEE
Q psy574 83 VAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQL 155 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I 155 (977)
..|... ..+.|.|. .+|.+...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+.. .++.+. ....|.|
T Consensus 179 ~~g~~~-~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i 257 (570)
T 3b43_A 179 PLGTAS-SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257 (570)
T ss_dssp TTEEEE-EEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEE
T ss_pred CCcEEE-EEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEE
Confidence 988654 44667765 467888888888999999999999999999999999999998864 344432 3468999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCC
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~ 234 (977)
.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.
T Consensus 258 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~---- 333 (570)
T 3b43_A 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ---- 333 (570)
T ss_dssp SSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECC----
T ss_pred cccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECC----
Confidence 999999999999999999999999999999999998776544 468899999999999999999999999998764
Q ss_pred CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEE
Q psy574 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLR 314 (977)
Q Consensus 235 ~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~ 314 (977)
...++.+... ++...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...|....+..|+.+.|.
T Consensus 334 -~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~G~~v~l~ 405 (570)
T 3b43_A 334 -ESSKFRMSFV-ESVAVLEMYNLSVEDSGDYT-CEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLE 405 (570)
T ss_dssp -CSSSEEEEEE-TTEEEEEEESCCGGGCEEEE-EEEEBTTBCCEEEEEECEEC-----CCEECSCCCCEEECTTCCEEEE
T ss_pred -CCCcEEEEEE-CCEEEEEECCCCcccCEEEE-EEEEeCCCEEEEEEEEEecC-----CCeeecCCCceeecCCCEEEEE
Confidence 2334444332 24458999999999999999 99999999999999999998 7888888888899999999999
Q ss_pred EEEcc--CceEEEEECCEEcCCCCcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCccc
Q psy574 315 CQVRG--EGSVQWWRGEREVGSGPRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~ 389 (977)
|.+.+ .|.+.|+++|..+....++.+..+ ++|.|.++...|+|.|+|.|.|..|.....+.|.|..++....
T Consensus 406 C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~--- 482 (570)
T 3b43_A 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK--- 482 (570)
T ss_dssp EEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEE---
T ss_pred EEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccc---
Confidence 99999 678999999999987777766544 3699999999999999999999999999999999987653211
Q ss_pred CCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEE
Q psy574 390 RAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469 (977)
Q Consensus 390 ~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i 469 (977)
.........+.+..+.+...+...+.+.|..........-..+.+. .......+.|
T Consensus 483 ~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~------------------------~~~~~~~L~i 538 (570)
T 3b43_A 483 KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS------------------------YSENIATLQF 538 (570)
T ss_dssp CCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC------------------------CCSSEEEEEE
T ss_pred cCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE------------------------ECCCEEEEEE
Confidence 1112223345555556666566667788876542000001112221 1112346778
Q ss_pred EccCCCCeEEEEEEEEcCCCCC
Q psy574 470 TNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 470 ~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.+..+...-.|.|.|.|..|..
T Consensus 539 ~~~~~~d~G~Y~C~a~N~~G~~ 560 (570)
T 3b43_A 539 SRAEPANAGKYTCQIKNEAGTQ 560 (570)
T ss_dssp SSCCTTCCEEEEEEEECSSCEE
T ss_pred CcCCHHHCEEEEEEEEECCcEE
Confidence 8888888899999999998865
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=428.06 Aligned_cols=541 Identities=15% Similarity=0.159 Sum_probs=316.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccC-CCeEEEEEEEeCCeeEEE-EEEEEEe---eC
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE-DAGEYVCEAENAVGKISA-SATLTVQ---MA 188 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~g~~~~-~~~L~V~---~~ 188 (977)
..++.|.|.+.|.|.+.+.|.|+|..+... ....+.|..+... ..+.|+|.+.+..|.... .+.+.+. .+
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~ 165 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW-----NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT 165 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC-----EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce-----eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence 458999999999999999999999887532 2234666655333 348899988888776432 2223222 56
Q ss_pred CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE-EE--EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WM--LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 189 p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~-W~--~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
|.+. .+.+..+.+|++++|.|.+.|.|.+.+. |+ ++|..+... .+.........+.|.|.+++..|.|.|
T Consensus 166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~------~~~~~~~~~~~~~l~I~~~~~~d~g~Y 238 (731)
T 2v5y_A 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK------EIKVTSSRRFIASFNVVNTTKRDAGKY 238 (731)
T ss_dssp CEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE------EEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred cccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc------ceEEeccccceEEEEEcccccccCeEE
Confidence 7766 6778899999999999999999999887 77 566654321 111111001124999999999999999
Q ss_pred EEEEEEcCCCc-eeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc----eEEEEECCEEcCCCC
Q psy574 266 ILCLGVNAAGS-DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG----SVQWWRGEREVGSGP 336 (977)
Q Consensus 266 ~~C~a~n~~g~-~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p----~i~W~~~g~~l~~~~ 336 (977)
+ |.|.|..|. .+..+.|.|... |.....|....+ ....+.|.|.... .+ .|.|...+... .
T Consensus 239 ~-c~A~n~~G~~~s~~~~l~V~~~-----P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~---~ 308 (731)
T 2v5y_A 239 R-CMIRTEGGVGISNYAELVVKEP-----PVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGSW---N 308 (731)
T ss_dssp E-EEEEETTEEEECCCEEEEEECC-----CCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC---E
T ss_pred E-EEEECCCCCcceeeEEEEEecC-----CCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCCc---e
Confidence 9 999999997 677788999873 332222322222 4467888887643 12 46776543211 1
Q ss_pred cEEEecCceEEEeccCCCCCeEEEEEEE--cCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCce
Q psy574 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL 414 (977)
Q Consensus 337 ~~~~~~~~sl~I~~v~~~d~G~Y~C~a~--n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv 414 (977)
.+......++.|.++.+.+.|.|+|.|. |..|.+..+..+.+.... ..+|.+|.++.+...+.+++
T Consensus 309 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~------------~~p~~~P~~~~~~~~~~~sv 376 (731)
T 2v5y_A 309 DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKC------------ADPMRGPRKLEVVEVKSRQI 376 (731)
T ss_dssp EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCC------------CCCSCCCEEEEEEEECSSCE
T ss_pred EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecC------------CCCCCCCceeEEEeccCCeE
Confidence 2223345679999999999999999999 999988766656555332 24578899999999999999
Q ss_pred EEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEE--eceecCcCeEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 415 TLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR--VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 415 ~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.|+|.++.. .++..+.+|.|+|+...... ...|.. .........++|.+|.|++.|.|+|+|.|..|.|
T Consensus 377 ~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s 448 (731)
T 2v5y_A 377 TIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ--------EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK 448 (731)
T ss_dssp EEEEECCCHHHHCSSSCEEEEEEEEESSSS--------EEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEE
T ss_pred EEEEECCCcccccceeeeEEEEEEEccCCC--------CccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCC
Confidence 999999865 23456789999998765321 012222 2334567889999999999999999999999987
Q ss_pred CCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CC
Q psy574 492 APSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NT 569 (977)
Q Consensus 492 ~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~ 569 (977)
. |. ...+++....| . +|+ . ..+.+.. .+++|.|+|++| .+
T Consensus 449 ~-S~-~~~~~T~~~~P----~---------~p~-------------------~---~~~~~~~-~~~si~l~W~~P~~~~ 490 (731)
T 2v5y_A 449 E-SQ-ELIVQTDEDLP----G---------AVP-------------------T---ESIQGST-FEEKIFLQWREPTQTY 490 (731)
T ss_dssp E-CC-CEEEECCCCCC----C---------CCC-------------------T---TTCEEEE-ETTEEEEECCCCSCCS
T ss_pred C-Cc-eEEEEccCCCC----C---------CCC-------------------c---ceEEeee-cCCeEEEEEcCCCCCC
Confidence 4 43 23333322222 2 110 0 0133333 478999999999 57
Q ss_pred CccceEEEEEEecCCCCCc-----eEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCC
Q psy574 570 DYIEGVYIYSRGLDPPASV-----AMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGV 644 (977)
Q Consensus 570 ~~i~~Y~v~y~~~~~~~~~-----~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~ 644 (977)
+.|.+|+|+|+..+....+ ....+......++++|.+|+|++.|.|+|+|+|..|.|+++. +.++|.+.+|..|
T Consensus 491 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p 569 (731)
T 2v5y_A 491 GVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKISAPSMP 569 (731)
T ss_dssp SCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEECCCCCCCC-
T ss_pred CCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEcCCCCCCCC
Confidence 7999999999987642211 122223336778999999999999999999999999998884 8899999999865
Q ss_pred CceeE-EEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcce-EE-------------------------------
Q psy574 645 PQLTD-PVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSAL-IN------------------------------- 691 (977)
Q Consensus 645 P~~v~-~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~-~~------------------------------- 691 (977)
+..+. ....+.++|.|+|.+| ...+|.|.+|.|.|+..+.... ..
T Consensus 570 ~~~~~~~~~~~~~si~l~W~pp--~~~~g~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aa~~~p 647 (731)
T 2v5y_A 570 AYELETPLNQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPA 647 (731)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccccCCceEEEEEeCC--CCCCCceEEEEEEEEecCCCCCccccccccCcccccCHHHHhhcCCcceEEEEcCh
Confidence 54332 2345778899999988 8889999999999887541100 00
Q ss_pred --------EEecC--CcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 692 --------MTVSA--STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 692 --------~~~~~--~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.++.. ....+.+..|+|++.|.|+|+|+|.+|.|..+..+.+.|..
T Consensus 648 ~~~~~~~~~~vg~~~~~~~~~n~~L~p~~~Y~i~v~A~s~~g~~~~~~~v~~~t~~ 703 (731)
T 2v5y_A 648 DSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG 703 (731)
T ss_dssp --------------------------------------------------------
T ss_pred hhCcccCCEEECCCCeECCEECCCCCCCCceEEEEEEEEecCCCcEeeeEEEeccc
Confidence 00000 00123345599999999999999999999999999998883
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=390.30 Aligned_cols=364 Identities=27% Similarity=0.432 Sum_probs=314.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-----CCCCCeEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQC 78 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-----~~~D~G~Y~C 78 (977)
....|..+|.++.+.+|+.++|.|.+..+.|.+.|.|+|||..+......|+....++.|.|.++ +.+|+|.|+|
T Consensus 20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C 99 (403)
T 3laf_A 20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99 (403)
T ss_dssp CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEE
T ss_pred eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEE
Confidence 34667889999999999999999999555788999999999999766677888888999999988 6779999999
Q ss_pred EEEecC-ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC----CCceEEeccceE
Q psy574 79 VVKNVA-GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP----EDRMSVLPSRSL 153 (977)
Q Consensus 79 ~a~n~~-g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~----~~~~~~~~~~~L 153 (977)
.+.+.. +...+..+.|.|..+|.+...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+. ..+.....++.|
T Consensus 100 ~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L 179 (403)
T 3laf_A 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179 (403)
T ss_dssp EEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCE
T ss_pred EEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceE
Confidence 999654 554567788999999999988999999999999999999999999999999998873 234555577899
Q ss_pred EEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
.|.+++.+|+|.|+|.|.|..+. ....+.|.|...| .+...+....+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus 180 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 259 (403)
T 3laf_A 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE 259 (403)
T ss_dssp EECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETT
T ss_pred EEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECC
Confidence 99999999999999999998776 3456778887555 3455677788999999999999999999999999999
Q ss_pred eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeec
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~ 306 (977)
..+.. ...++.... ...|.|.++..+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.+..+.
T Consensus 260 ~~~~~----~~~~~~~~~----~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~ 325 (403)
T 3laf_A 260 EVIQL----RSKKYSLLG----GSNLLISNVTDDDSGTYT-CVVTYKNENISASAELTVLV-----PPWFLNHPSNLYAY 325 (403)
T ss_dssp EECCC----SSSSEEEET----TTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECCCCEECC
T ss_pred eeccC----CCceEEECC----ccEEEEeCCCHHHCEEEE-EEEEcCCCceEEEEEEEEEC-----CCcEeecCcceEEe
Confidence 87642 223333332 238999999999999999 99999999999999999988 78888889899999
Q ss_pred CCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 307 ~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
.|+.+.|.|.+.+ .+.+.|+++|..+....++.+...++|.|.++...|.|.|+|.|.|..|....++.|.|.+|
T Consensus 326 ~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp TTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 9999999999998 67899999999998888888888889999999999999999999999999999999988754
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=388.32 Aligned_cols=608 Identities=17% Similarity=0.198 Sum_probs=390.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee--------c---------CCCceEEEecCcEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------F---------ENSKRLRLVDGTNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~--------~---------~~~~r~~~~~~g~L~I~~v~ 69 (977)
+|.++|.++.+.+|++++|.|.. .+.+...|.|+|+..... . ...+|..+..+++|.|.+++
T Consensus 1 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~ 79 (642)
T 1e07_A 1 KLTIESTPFNVAEGKEVLLLVHN-LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII 79 (642)
T ss_pred CceEeccCCcccccccEEEEEcc-CCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEECCCC
Confidence 37789999999999999999987 445677999999442210 0 11346677778899999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ce
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RM 145 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~ 145 (977)
.+|+|.|+|.+.+.........+.|.|.. +|.+.. +....+.+|+.+.|.|.+.+ |.+.+.|+|++..+..+ ++
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~ 157 (642)
T 1e07_A 80 QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRL 157 (642)
T ss_pred cccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCce
Confidence 99999999999986543345566788875 344443 33567889999999999988 89999999999988653 44
Q ss_pred EEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEE
Q psy574 146 SVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222 (977)
Q Consensus 146 ~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W 222 (977)
.+. .++.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..+| .+...|.+..+.+|+.++|.|.+.+.|.+.+.|
T Consensus 158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W 237 (642)
T 1e07_A 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237 (642)
T ss_pred EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEE
Confidence 443 4578999999999999999999998876 4567889998544 455567778899999999999999999999999
Q ss_pred EEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE--EEEEECCCCCCCCeEEeCC
Q psy574 223 MLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA--SLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~--~l~V~~~~~~~pp~i~~~p 300 (977)
+++|..+. ....|.|.++..+|+|.|+ |.|.|..|....+. .|.|... ..+|.+.. +
T Consensus 238 ~~~g~~i~-----------------~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~~~v~v~~~--~~~p~i~~-~ 296 (642)
T 1e07_A 238 FVNGTFQQ-----------------STQELFIPNITVNNSGSYT-CQAHNSDTGLNRTTVTTITVYAE--PPKPFITS-N 296 (642)
T ss_pred EECCeEcc-----------------cCCceEEecccccCCeEEE-EEEEeCCCceEEeeeEEEEEEcc--CCCCEEEc-C
Confidence 99997652 1127999999999999999 99999998765544 4555442 22444443 3
Q ss_pred CceeecCCCcEEEEEEEcc-CceEEEEECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~-~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~-~~s~~l~ 377 (977)
....+..|+.+.|.|.+.+ ++.+.|+++|..+....++.+.. .++|.|.++...|+|.|+|.|.|..|.. +..+.|.
T Consensus 297 ~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 376 (642)
T 1e07_A 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376 (642)
T ss_pred CceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEE
Confidence 3445666888999999999 77999999999987777776653 4689999999999999999999999874 4557787
Q ss_pred EECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEE
Q psy574 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457 (977)
Q Consensus 378 v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~ 457 (977)
|..++.... . .|.... ......+.|....... +.. .| .|..
T Consensus 377 V~~~p~~~~---------~---~~~~~~--~~~g~~~~l~C~~~g~----p~~--~i-------------------~W~~ 417 (642)
T 1e07_A 377 VLYGPDDPT---------I---SPSYTY--YRPGVNLSLSCHAASN----PPA--QY-------------------SWLI 417 (642)
T ss_pred EEcCCCCCe---------e---cCCceE--ecCCCcEEEEEEcCcc----CCC--eE-------------------EEEE
Confidence 775432111 0 111111 1122344444443221 000 12 2222
Q ss_pred ecee-cCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHh
Q psy574 458 VATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536 (977)
Q Consensus 458 ~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~ 536 (977)
.... .....+.|.++.+.....|+|.|.|..|....+.. ..+.+....+ .|. +. ++
T Consensus 418 ~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~-~~v~v~~~~~--~p~------i~-~~------------- 474 (642)
T 1e07_A 418 DGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTV-KTITVSAELP--KPS------IS-SN------------- 474 (642)
T ss_pred CCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccce-EEEEEeccCC--Cce------Ee-cC-------------
Confidence 1111 12345788899999999999999999886644321 2222211100 000 00 00
Q ss_pred hcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 537 ~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
-.........+.|.+.... ..-.+.|...+....... ..........+.|.++.......++
T Consensus 475 -------------~~~~v~~g~~v~l~C~~~~----~~~~i~W~~~g~~l~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~ 536 (642)
T 1e07_A 475 -------------NSKPVEDKDAVAFTCEPEA----QNTTYLWWVNGQSLPVSP-RLQLSNGNRTLTLFNVTRNDARAYV 536 (642)
T ss_pred -------------CceeecCCCeEEEEEECCC----CCcEEEEEECCEeCCCCC-cEEEcCCCcEEEEeecChhcCceEE
Confidence 0011112334444444331 012233332221000000 0011122356888887766666667
Q ss_pred EEEeecceeCCC-CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 617 LVPFFGSVDGKP-SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 617 V~a~n~~g~g~~-s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
..|.|..|.... +..+.+...+..+...|.++.+.. ...+.|....- ..+. -.|.|...+.. +.
T Consensus 537 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~--g~~~~l~C~~~--g~p~-----p~v~W~~~g~~------i~ 601 (642)
T 1e07_A 537 CGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS--GANLNLSCHSA--SNPS-----PQYSWRINGIP------QQ 601 (642)
T ss_pred EEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEc--CCcEEEEEEec--cCCC-----CeEEEEECCEE------Cc
Confidence 777787775322 223334332222322344443332 34566666532 1111 13444442211 11
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEe
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~ 734 (977)
....+.|.++.+...-.++..|.|.+|....+..+.++
T Consensus 602 -~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 602 -HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred -cCceEEECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence 23467888888877777888899999987666555554
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=379.86 Aligned_cols=358 Identities=23% Similarity=0.397 Sum_probs=289.0
Q ss_pred ccccceecccceEE---eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-CCCCCeEEEEE
Q psy574 4 LREEFRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-RKTDDGRYQCV 79 (977)
Q Consensus 4 l~~~~~~~p~~~~v---~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-~~~D~G~Y~C~ 79 (977)
..|.|..+|.++.+ .+|+.+.|.|.+ .|.|.|.|.|+|||..+....+.|+.+. +|.|.|.++ +.+|+|.|+|+
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~-~g~l~i~~~~~~~D~G~Y~C~ 81 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVV-DGSLLINNPNKTQDAGTYQCI 81 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEE-EEESCCEEEEEETTEECCC----CEEEE-TTEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEe-cCCCCCEEEEEECCEECcCCCCccEEEE-CCEEEEcCCCCcccCEEEEEE
Confidence 35789999999877 689999999999 8999999999999999965556677665 678888876 78999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEE-eccceEEE
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSV-LPSRSLQL 155 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~-~~~~~L~I 155 (977)
|.|..|...+..+.|.|...+.+... +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... +..+ ..++.|.|
T Consensus 82 A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I 161 (384)
T 3kld_A 82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYI 161 (384)
T ss_dssp EEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEE
T ss_pred EEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEE
Confidence 99999987777788888765555443 355788999999999986 35678899999999887543 2222 25678999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEE---EEEEEEe-------eCCeEE-ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISA---SATLTVQ-------MAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~---~~~L~V~-------~~p~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~ 224 (977)
.+++.+|+|.|+|.|.|..+.... ...+.+. .+|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 162 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k 241 (384)
T 3kld_A 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR 241 (384)
T ss_dssp SSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred eecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEe
Confidence 999999999999999998764321 1222222 234443 34666788999999999999999999999999
Q ss_pred cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCcee
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~ 304 (977)
++..... ...+ . .. ....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.+..
T Consensus 242 ~~~~~~~----~~~~--~-~~--~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~l~v~~-----~P~~~~~~~~~~ 306 (384)
T 3kld_A 242 ADGKPIA----RKAR--R-HK--SNGILEIPNFQQEDAGSYE-CVAENSRGKNVAKGQLTFYA-----QPNWVQIINDIH 306 (384)
T ss_dssp TTCCCCC----TTCE--E-CT--TSCEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECCCCEE
T ss_pred CCCcccc----ccce--e-cC--CCcEEEECCCChhhCEEEE-EEEEcCCCeEEEEEEEEEec-----CCccccCCCceE
Confidence 6543211 1111 1 11 2238999999999999999 99999999999999999988 788888888999
Q ss_pred ecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 305 LPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 305 v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
+..|+.+.|.|.+.| .|.|.|+++|..+....++.+ .+++|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus 307 v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp ECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 999999999999999 689999999999987777775 46799999999999999999999999999999999885
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=406.43 Aligned_cols=447 Identities=18% Similarity=0.225 Sum_probs=337.5
Q ss_pred CCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeec-ccCCCCeEEEEEEEcCCCceeEEE
Q psy574 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV-SRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 203 G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v-~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
...+.|.|.+.|.|.+.+.|.++|.++... .. + .+.|..+ .....+.|. |++.+..|.... .
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~---~~----------~--~~~i~~~~~~~~~l~~~-~va~~~~G~~~~-~ 153 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW---NR----------A--ELAISTFWPNFYQVIFE-VITSGHQGYLAI-D 153 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC---EE----------E--EEEECCCTTSCEEEEEE-EEECSSCCEEEE-C
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce---eE----------E--EEEEeecCCCceEEEEE-EEecCCceEEEE-e
Confidence 357899999999999999999999765211 01 1 3444433 222235666 666666554332 2
Q ss_pred EEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEE-EE--ECCEEcCCCCcEEEec---CceEEEeccCC
Q psy574 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQ-WW--RGEREVGSGPRVNVTG---DGSLVLTDVTK 353 (977)
Q Consensus 282 ~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~-W~--~~g~~l~~~~~~~~~~---~~sl~I~~v~~ 353 (977)
.+.+.......+|.+. .+.+..+..|+.+.|.|.+.+ .|.+. |+ ++|..+.......+.. .++|.|.++..
T Consensus 154 ~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~ 232 (731)
T 2v5y_A 154 EVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232 (731)
T ss_dssp CBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCT
T ss_pred eEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEccccc
Confidence 2334333334477776 566889999999999999999 56677 77 6776553322111111 35799999999
Q ss_pred CCCeEEEEEEEcCCCc-eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceE
Q psy574 354 EDSGEYTCVVKSPHGS-ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGY 432 (977)
Q Consensus 354 ~d~G~Y~C~a~n~~G~-~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y 432 (977)
.|.|.|+|.|.|..|. .+..+.|.|..+ |.+|..+.+...+.+++.|+|.++...++.++.+|
T Consensus 233 ~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~----------------P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y 296 (731)
T 2v5y_A 233 RDAGKYRCMIRTEGGVGISNYAELVVKEP----------------PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAR 296 (731)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEEEEECC----------------CCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEE
T ss_pred ccCeEEEEEEECCCCCcceeeEEEEEecC----------------CCCCCCcceeccCCceEEEEeCCcccCCCCccEEE
Confidence 9999999999999998 666788888743 56666777778888999999998876567889999
Q ss_pred EEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEE--cCCCCCCCCCCCceEEeeccccccc
Q psy574 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRAL--NSHGLSAPSPLSDEIVLRGTFSEGI 510 (977)
Q Consensus 433 ~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~--n~~G~s~~S~~s~~~~~~~~~p~~~ 510 (977)
.|+|+.... .|.... .....+++|.+|.|++.|.|+|+|. |..|.+.+|... .+.+....|
T Consensus 297 ~v~~~~~~~------------~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~-~~~t~~~~p--- 359 (731)
T 2v5y_A 297 EVEYCTASG------------SWNDRQ-PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPAL-RTRTKCADP--- 359 (731)
T ss_dssp EEEEEESSS------------SCEEEE-ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCE-EEECCCCCC---
T ss_pred EEEEEECCC------------CceEEe-ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcE-EeeecCCCC---
Confidence 999987532 676554 3456899999999999999999999 999999887653 233312222
Q ss_pred cccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCC
Q psy574 511 FSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPA 586 (977)
Q Consensus 511 p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~ 586 (977)
+.+|.++++...++++|.|+|++| .+..+.+|.|+|+.... .
T Consensus 360 ---------------------------------~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~-~ 405 (731)
T 2v5y_A 360 ---------------------------------MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG-G 405 (731)
T ss_dssp ---------------------------------SCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS-S
T ss_pred ---------------------------------CCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC-C
Confidence 223478999999999999999998 25678899999998864 2
Q ss_pred CceEE---EEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCC-ceeEEEEecCcEEEEEe
Q psy574 587 SVAML---TVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP-QLTDPVLLNATSVLLKW 662 (977)
Q Consensus 587 ~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P-~~v~~~~~~~~sv~v~W 662 (977)
.+... .+........++|.+|+|++.|.|+|+|+|..|.| .|..+.++|.+++|..+| .++.... ++++|.|+|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s-~S~~~~~~T~~~~P~~p~~~~~~~~~-~~~si~l~W 483 (731)
T 2v5y_A 406 QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGST-FEEKIFLQW 483 (731)
T ss_dssp SEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEE-ECCCEEEECCCCCCCCCCTTTCEEEE-ETTEEEEEC
T ss_pred CCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCC-CCceEEEEccCCCCCCCCcceEEeee-cCCeEEEEE
Confidence 22211 23444667899999999999999999999999998 488999999999998766 4666554 468999999
Q ss_pred eCCCCCCCCeeeeEEEEEEEecCC--------cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEe
Q psy574 663 KPPPVGTHNGVIRTYQIIVGGGNN--------SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734 (977)
Q Consensus 663 ~~p~~~~~ng~i~~Y~v~~~~~~~--------~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~ 734 (977)
++| ...||.|.+|+|+|+..+. .........++.++++|.+|+|++.|.|+|+|+|.+|.|++|. +.++
T Consensus 484 ~~P--~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~ 560 (731)
T 2v5y_A 484 REP--TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFT 560 (731)
T ss_dssp CCC--SCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred cCC--CCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence 998 6789999999999988541 1234455677889999999999999999999999999999994 7777
Q ss_pred ecCCC
Q psy574 735 LTSGP 739 (977)
Q Consensus 735 t~~~~ 739 (977)
|....
T Consensus 561 T~~~~ 565 (731)
T 2v5y_A 561 TKISA 565 (731)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76544
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=362.47 Aligned_cols=377 Identities=16% Similarity=0.239 Sum_probs=292.3
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc--CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE--GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+|.+.. +.+..+.+|+.++|.|.+.|.|.+.|.|+|+ |..+.........++.+... .+...|.|.+++.+|+|.|
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y 78 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-HGSSSLHIKDVKLSDSGRY 78 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-SSEEEEEEESCCGGGCEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-CCcceEEEcccChhhCEEE
Confidence 355555 6677888999999999999999999999999 76664322223567776653 3456999999999999999
Q ss_pred EEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCC--cEEEe
Q psy574 266 ILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVT 341 (977)
Q Consensus 266 ~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~--~~~~~ 341 (977)
+ |.|.|..|.....+.|.|.. +|.+...+....+..|+.+.|.|.+.+ .+.+.|+++|..+.... ++.+.
T Consensus 79 ~-C~a~n~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~ 152 (389)
T 2jll_A 79 D-CEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY 152 (389)
T ss_dssp E-EEEECSSCEEEEEEEEEEEE-----EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEE
T ss_pred E-EEEEeCCCCcceEEEEEEEe-----CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEe
Confidence 9 99999999999999999997 677777666667899999999999999 77899999999987653 55554
Q ss_pred cC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 342 GD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 342 ~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
.+ ..|.|.++...|.|.|+|.|.|..|.......+.+. ..|.+|.++.+...+..++.|+|
T Consensus 153 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~----------------~~P~~P~~~~~~~~~~~~~~l~w 216 (389)
T 2jll_A 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA----------------DVPSSPYGVKIIELSQTTAKVSF 216 (389)
T ss_dssp ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC----------------CCCCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec----------------CCCCCCcceEEeeccCCEEEEEE
Confidence 33 369999999999999999999999998888877774 44778888888888889999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
.++...++.++..|.|+++..... .|.........
T Consensus 217 ~~p~~~~g~pi~~y~v~~~~~~~~-----------~~~~~~~~~~~---------------------------------- 251 (389)
T 2jll_A 217 NKPDSHGGVPIHHYQVDVKEVASE-----------IWKIVRSHGVQ---------------------------------- 251 (389)
T ss_dssp ECCSCCTTSCEEEEEEEEEETTCS-----------CCEEEECSTTC----------------------------------
T ss_pred eCCCCCCCcceEEEEEEEEECCCc-----------ccEEeeccCCc----------------------------------
Confidence 988776677889999998865433 45433222222
Q ss_pred eEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEE
Q psy574 499 EIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIY 578 (977)
Q Consensus 499 ~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~ 578 (977)
T Consensus 252 -------------------------------------------------------------------------------- 251 (389)
T 2jll_A 252 -------------------------------------------------------------------------------- 251 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEE
Q psy574 579 SRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSV 658 (977)
Q Consensus 579 y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv 658 (977)
..+.|.+|.+++.|.|+|.|.|..|.|.++..+.+.|.+..|+.+|. +.....+.+++
T Consensus 252 ---------------------~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v 309 (389)
T 2jll_A 252 ---------------------TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF 309 (389)
T ss_dssp ---------------------SEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEE
T ss_pred ---------------------ceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-cccccCcCCEE
Confidence 33455556666666666666666666656665666676665555774 66666788999
Q ss_pred EEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 659 LLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 659 ~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.|+|.+| .+.++.|.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|+|+|+|.+|.|++|.. .++|.+
T Consensus 310 ~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~-~~~T~~ 386 (389)
T 2jll_A 310 KLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY-EFSMPP 386 (389)
T ss_dssp EEEECCC--CCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE-EEECCC
T ss_pred EEEEECC--CCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee-EecCCC
Confidence 9999988 678899999999999855 333334556778899999999999999999999999999999965 676655
Q ss_pred C
Q psy574 738 G 738 (977)
Q Consensus 738 ~ 738 (977)
.
T Consensus 387 ~ 387 (389)
T 2jll_A 387 K 387 (389)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=369.97 Aligned_cols=356 Identities=27% Similarity=0.401 Sum_probs=297.6
Q ss_pred cccccceecccceEE---eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCC-CCCeEEEE
Q psy574 3 LLREEFRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v---~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C 78 (977)
+.+|.|..+|.+..+ .+|++++|.|.+ .|.|.+.|.|+|||..+....+.|+.+. +++|.|.++.. +|+|.|+|
T Consensus 2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~L~i~~~~~~~D~G~Y~C 79 (382)
T 1cs6_A 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQC 79 (382)
T ss_dssp CEEEEEEECCCCEEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEE-TTEEEEESCCHHHHCEEEEE
T ss_pred CCCCEEEECCCcEEEecCCCCCcEEEEEEe-cCCCCCEEEEEECCEECCcCCCccEEee-CCeEEEecccccccCEEEEE
Confidence 357899999999887 799999999999 7889999999999999976656777775 78999999997 99999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---CCceEEe-ccce
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVL-PSRS 152 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---~~~~~~~-~~~~ 152 (977)
+|.|..|...+..+.|.|...|.+... +....+.+|+++.|.|.+ .+.|.+.+.|+|++..+. ..+..+. .++.
T Consensus 80 ~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 159 (382)
T 1cs6_A 80 VATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159 (382)
T ss_dssp EEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCC
T ss_pred EEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceE
Confidence 999998877777788888876665543 566789999999999996 567889999999987652 2333333 4478
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeE-----EEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKI-----SASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~-----~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+.|.+.+
T Consensus 160 L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i 239 (382)
T 1cs6_A 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239 (382)
T ss_dssp EEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEE
T ss_pred EEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEE
Confidence 9999999999999999999877422 223455543 2455544 356778999999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|++++..+.. .+ ......|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+
T Consensus 240 ~W~~~~~~~~~-------~~-----~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~ 301 (382)
T 1cs6_A 240 KWRKLDGSQTS-------KW-----LSSEPLLHIQNVDFEDEGTYE-CEAENIKGRDTYQGRIIIHA-----QPDWLDVI 301 (382)
T ss_dssp EEEECCSCCSC-------CC-----SBSSSEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECC
T ss_pred EEEECCccccc-------EE-----ecCCcEEEEccCChhhCEEEE-EEEEcCCCeEEEEEEEEEec-----CCCcccCC
Confidence 99998876421 00 012348999999999999999 99999999988889999987 78888888
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v 378 (977)
....+..|+.+.|.|.+.+ .|.+.|+++|..+....++.+ .+++|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 302 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 380 (382)
T 1cs6_A 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380 (382)
T ss_dssp CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEE
Confidence 8889999999999999998 778999999999988877766 4578999999999999999999999999999999988
Q ss_pred E
Q psy574 379 E 379 (977)
Q Consensus 379 ~ 379 (977)
.
T Consensus 381 ~ 381 (382)
T 1cs6_A 381 Q 381 (382)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=398.70 Aligned_cols=631 Identities=18% Similarity=0.232 Sum_probs=404.2
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCC------CeEE
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTD------DGRY 76 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D------~G~Y 76 (977)
.|.|..+|.+ +.+.+|+.++|.|.+ .|.|.+.|.|+| ||+.+.... ....+..+|+|.|.+++.+| +|.|
T Consensus 38 ~P~~~~~p~~~~~~~~g~~~~l~C~a-~g~p~p~~~W~k~~g~~~~~~~-~~~~~~~~g~l~i~~~~~~~~~~~~d~G~Y 115 (816)
T 3dmk_A 38 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115 (816)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBT-TTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCcEEeCCCCeEEEECCCCeEEEeee-cCCCCCEEEEEeCCCCCccCCC-ceEEEeeCCcEEEcCCChHHccccccceEE
Confidence 4889999988 568899999999999 889999999999 898885332 23344668999999999887 8999
Q ss_pred EEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeC------CCCceEE
Q psy574 77 QCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAM------PEDRMSV 147 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l------~~~~~~~ 147 (977)
+|.|.|..|...+..+.|.+...+.+...+....+.+|+++.|.|.+.+.+ .+.+.|+|++..+ ..+|+.+
T Consensus 116 ~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~ 195 (816)
T 3dmk_A 116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195 (816)
T ss_dssp EEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEE
T ss_pred EEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEE
Confidence 999999999877888888888777777778888999999999999985432 2789999997654 2568888
Q ss_pred eccceEEEccCccCCC-eEEEEEEEeCCee-EE---EEEEEEEee-----CCeEEecC--CCcEEeeCCeEEEEEEEecC
Q psy574 148 LPSRSLQLSDVRLEDA-GEYVCEAENAVGK-IS---ASATLTVQM-----APIVRERP--SDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~-~~---~~~~L~V~~-----~p~~~~~p--~~~~v~~G~~v~L~C~~~g~ 215 (977)
..+++|.|.+++.+|+ |.|+|.+.|..+. .. ....|.|.. +|.+...+ ....+..|+.++|.|.+.|.
T Consensus 196 ~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~ 275 (816)
T 3dmk_A 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGY 275 (816)
T ss_dssp CTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCS
T ss_pred ecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeec
Confidence 8889999999999999 9999999976532 11 223555553 34443222 34578899999999999999
Q ss_pred CCCeEEEEEcCeeeeec-CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCC
Q psy574 216 PPPSTFWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294 (977)
Q Consensus 216 p~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp 294 (977)
|.+.+.|+|++...... ......++... .+ .|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. ++
T Consensus 276 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~~ 344 (816)
T 3dmk_A 276 PVPVFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYL-CVVNNSVGGESVETVLTVTA-----PL 344 (816)
T ss_dssp SCCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEECE-----EE
T ss_pred CCCeEEEEeCCCCCccCcceecCCceEec---cc--eEEECCCCHhHCEEEE-EEEEcCCCceEEEEEEEEcC-----CC
Confidence 99999999965422110 00112233222 24 9999999999999999 99999999888888888876 56
Q ss_pred eEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 295 VILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 295 ~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
.+...|....+..|+.+.|.|.+.+ .+.+.|+++|..+... ++.|.|.++...|+|.|+|.|.|..|....
T Consensus 345 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 417 (816)
T 3dmk_A 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEA 417 (816)
T ss_dssp EEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred ceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------CCEEEEcCCCHHHCEEEEEEEECCCCcEEE
Confidence 6677778888999999999999998 6789999999988543 467999999999999999999999998888
Q ss_pred EEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCc
Q psy574 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452 (977)
Q Consensus 373 s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~ 452 (977)
+..+.+.....+..............+....+.|...+.....+.|....... .....|.+......
T Consensus 418 ~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l-~~~~~~~~~~~~~~------------ 484 (816)
T 3dmk_A 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI-ANNDRYQVGQYVTV------------ 484 (816)
T ss_dssp CCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEEC-CSCTTEEEEEEECT------------
T ss_pred EEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEEC-CCCCCcccccEEec------------
Confidence 88777753222211111111112233434444554444455677777644310 01112222111100
Q ss_pred ccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchH
Q psy574 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532 (977)
Q Consensus 453 ~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~ 532 (977)
.......+.|.++.......|+|.|.|..|.... +..+.+. ..| . ..++
T Consensus 485 -------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~-~~p----~-------~~~~--------- 533 (816)
T 3dmk_A 485 -------NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH---SAKLNVY-GLP----Y-------IRQM--------- 533 (816)
T ss_dssp -------TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEE---EEEEEEC-SSC----E-------ECCC---------
T ss_pred -------CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEE---EEEEEEe-cCC----e-------eEcc---------
Confidence 0111234778888888889999999998875422 1222221 111 0 0000
Q ss_pred HHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCC--CCceEEEEeecCccceEEECCCC-C
Q psy574 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPP--ASVAMLTVLHAGEASGFLVTGLA-H 609 (977)
Q Consensus 533 ~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~-p 609 (977)
-.........+.|.+...... .-.|.|...+.. ..... .. .....+.|.++. .
T Consensus 534 -----------------~~~~v~~G~~v~l~C~~~g~p---~~~i~W~k~~~~l~~~~~~-~~---~~~~~l~i~~v~~~ 589 (816)
T 3dmk_A 534 -----------------EKKAIVAGETLIVTCPVAGYP---IDSIVWERDNRALPINRKQ-KV---FPNGTLIIENVERN 589 (816)
T ss_dssp -----------------CCEEEETTCCEEEECCEECSS---EEEEEEEETTEESCCSTTE-EE---CTTSEEEESSCCHH
T ss_pred -----------------CCeEEecCCeEEEEEEecCCC---CCEEEEEECCeEcccCCce-EE---ecCCeEEEEecCcc
Confidence 001111223333333322100 012333322210 00000 00 123467888876 4
Q ss_pred CcEEEEEEEEeecceeCCCCCceEE--eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--
Q psy574 610 YSRYEFFLVPFFGSVDGKPSNLRAV--RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-- 685 (977)
Q Consensus 610 ~t~Y~~~V~a~n~~g~g~~s~~~~~--~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-- 685 (977)
.....++..|.|..|... +..+.+ ...+......+.... ......+.|.+.... ... ...|.|...+
T Consensus 590 ~d~G~Y~C~a~n~~g~~~-~~~~~v~v~~~p~~~~~~~~~~~--~~~G~~v~L~C~~~~--~~~----~~~i~W~~~g~~ 660 (816)
T 3dmk_A 590 SDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGP--AQVGQYLTLHCSVPG--GDL----PLNIDWTLDGQA 660 (816)
T ss_dssp HHCEEEEEEEEESSSCEE-EEEEEEEEECCCCCBCCCCCSSC--EESSCEEEEEEBCCC--SSS----CCEEEEEETTBC
T ss_pred ccCEEEEEEEEECCCcee-eeeEEEEEecCCccccccccccc--cCCCCeEEEEEEEeC--CCC----CCEEEEEECCeE
Confidence 444555566677766431 122222 222111111112222 224567888887541 111 1134444432
Q ss_pred ---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceE
Q psy574 686 ---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732 (977)
Q Consensus 686 ---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~ 732 (977)
...............+.|.++.......++..|.|.+|....+..+.
T Consensus 661 l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~ 710 (816)
T 3dmk_A 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLN 710 (816)
T ss_dssp CCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred cCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEE
Confidence 11112222333456788999999888899999999988765443333
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=372.31 Aligned_cols=360 Identities=20% Similarity=0.312 Sum_probs=287.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|.|...|.++.+.+|+.++|.|.+..+.|.+.|.|+|||+.+............+++|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 85 (395)
T 1bih_A 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 85 (395)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCC
Confidence 57888999999999999999999993338999999999999996544333334457889999999999999999999988
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECC---eeCC-----CCceEEeccceEEE
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLG---SAMP-----EDRMSVLPSRSLQL 155 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~---~~l~-----~~~~~~~~~~~L~I 155 (977)
|...+..+.|.|...+.....+.+..+.+|+++.|.|.+ .+.|.+.+.|+|++ .... ..++....++.|.|
T Consensus 86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 165 (395)
T 1bih_A 86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165 (395)
T ss_dssp EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEE
T ss_pred CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEE
Confidence 876666667766533222223456678899999999996 88999999999986 2211 34666667889999
Q ss_pred ccCccCCCe---EEEEEEEeCCeeEEEEEE---EEEee----------CCeEEecCCCcEEeeCCeEEEEEEEecCCCCe
Q psy574 156 SDVRLEDAG---EYVCEAENAVGKISASAT---LTVQM----------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPS 219 (977)
Q Consensus 156 ~~v~~~D~G---~Y~C~a~n~~g~~~~~~~---L~V~~----------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~ 219 (977)
.+++.+|+| .|+|.|.|..+....... +.+.. +|.+ .+....+.+|+.++|.|.+.|.|.+.
T Consensus 166 ~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~ 243 (395)
T 1bih_A 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGY 243 (395)
T ss_dssp EEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCC
T ss_pred EEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCe
Confidence 999999999 999999998876332222 22211 2222 46777899999999999999999999
Q ss_pred EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEe
Q psy574 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILF 298 (977)
Q Consensus 220 i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~ 298 (977)
+.|+++|..+... ...++..... .+.+.|.|.++..+|+|.|+ |.|.|..|.... .+.|.|.. +|.+..
T Consensus 244 i~W~~~g~~~~~~---~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~~l~V~~-----~P~~~~ 313 (395)
T 1bih_A 244 PNYFKNGKDVNGN---PEDRITRHNR-TSGKRLLFKTTLPEDEGVYT-CEVDNGVGKPQKHSLKLTVVS-----APKYEQ 313 (395)
T ss_dssp CEEEETTEECCCC---TTSSEESCSS-STTSEEEESSCCGGGCEEEE-EEECCSSSSCEEEEEEEEEEE-----EEEEEE
T ss_pred EEEEECCEEcCCC---CceeEEEEec-CCCceEEEccCChhhCEEEE-EEEEeCCCCceEEEEEEEEEc-----CCcccc
Confidence 9999999876432 1223322211 12248999999999999999 999999998765 88999987 788888
Q ss_pred CCCc-eeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy574 299 GPAN-QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375 (977)
Q Consensus 299 ~p~~-~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~ 375 (977)
.+.. ..+..|+.+.|.|.+.+ .|.+.|+++|..+... ++.+. ++.|.|.++...|+|.|+|.|.|..|....++.
T Consensus 314 ~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE-CCEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 8877 78999999999999998 7789999999998654 66554 459999999999999999999999999988888
Q ss_pred EEE
Q psy574 376 LRF 378 (977)
Q Consensus 376 l~v 378 (977)
|.|
T Consensus 392 l~V 394 (395)
T 1bih_A 392 VQV 394 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.40 Aligned_cols=354 Identities=25% Similarity=0.407 Sum_probs=288.6
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCC------CeEE
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTD------DGRY 76 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D------~G~Y 76 (977)
.|.|..+|.+ +.+.+|+.++|.|.+ .|.|.+.|.|+| ||..+......+ .+..+|+|.|.+++.+| +|.|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~k~~g~~~~~~~~~~-~~~~~~~L~i~~~~~~d~~~~~d~G~Y 80 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLR-QISSDGKLVFPPFRAEDYRQEVHAQVY 80 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBTTTB-EECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEEC-CCCCCCEEEEEcCCCCccccCCCce-EEcCCceEEecccChhhccccccCceE
Confidence 4788898887 568899999999999 889999999999 888885433323 34568899999999997 9999
Q ss_pred EEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeCC------CCceEE
Q psy574 77 QCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAMP------EDRMSV 147 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l~------~~~~~~ 147 (977)
+|.|.|..|...+..+.|.|..+|.+...+....+.+|+++.|.|.+.+.+ .+.+.|++++..+. ..++.+
T Consensus 81 ~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 2v5m_A 81 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160 (388)
T ss_dssp EEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred EEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence 999999998776778889999889888888888999999999999997654 38999999987652 346666
Q ss_pred eccceEEEccCccCCC-eEEEEEEEeCCee-EEEE---EEEEEeeC-----CeEE-ecCCCcEEeeCCeEEEEEEEecCC
Q psy574 148 LPSRSLQLSDVRLEDA-GEYVCEAENAVGK-ISAS---ATLTVQMA-----PIVR-ERPSDLRLEVGRDAVFLCGIEGSP 216 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~-~~~~---~~L~V~~~-----p~~~-~~p~~~~v~~G~~v~L~C~~~g~p 216 (977)
..++.|.|.+++.+|+ |.|+|.+.|..+. .... ..|.|..+ |.+. .......+.+|+.++|.|.+.|.|
T Consensus 161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p 240 (388)
T 2v5m_A 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP 240 (388)
T ss_dssp CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES
T ss_pred ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC
Confidence 7788999999999999 9999999997643 2221 35666644 2211 123345788999999999999999
Q ss_pred CCeEEEEEcCeeeeec-CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCe
Q psy574 217 PPSTFWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295 (977)
Q Consensus 217 ~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~ 295 (977)
.+.+.|++++..+... ......++... .+ .|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.
T Consensus 241 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~ 309 (388)
T 2v5m_A 241 APSFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYL-CVVNNSVGGESVETVLTVTA-----PLS 309 (388)
T ss_dssp CCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEE-----EEE
T ss_pred CCEEEEEecCCCCcccccccccCceecc---cC--EEEECcCCHHHCeEEE-EEEecCCCceeEEEEEEEeC-----CCc
Confidence 9999999986432110 00112233322 23 8999999999999999 99999999998889999987 677
Q ss_pred EEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy574 296 ILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373 (977)
Q Consensus 296 i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s 373 (977)
+...|....+..|+.+.|.|.+.+ .|.+.|+++|..+... ++.|.|.++...|+|.|+|.|.|..|....+
T Consensus 310 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 382 (388)
T 2v5m_A 310 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 382 (388)
T ss_dssp EEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred cccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC-------CCEEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence 777788889999999999999998 6789999999988542 4689999999999999999999999999998
Q ss_pred EEEEE
Q psy574 374 ASLRF 378 (977)
Q Consensus 374 ~~l~v 378 (977)
+.|.|
T Consensus 383 ~~l~V 387 (388)
T 2v5m_A 383 AELKL 387 (388)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88876
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=370.17 Aligned_cols=333 Identities=19% Similarity=0.331 Sum_probs=266.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
...+.+|+.++|.|.+ .+ |.+.|.|+|||+.+.. ..|+.+.. ++.|.|.+++.+|+|.|+|.|.|..|...+..+
T Consensus 120 ~~~v~~g~~v~l~C~~-~~-p~~~v~W~~~g~~l~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~ 195 (642)
T 1e07_A 120 SKPVEDKDAVAFTCEP-ET-QDATYLWWVNNQSLPV--SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSV 195 (642)
T ss_pred ceeEecCCcEEEEEEC-CC-CCeeEEEEECCeECCC--CCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceE
Confidence 4668899999999999 55 8999999999999853 34565543 568999999999999999999998887667778
Q ss_pred EEEEEcCC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEE
Q psy574 93 VLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 93 ~l~V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.|.|..+| .+...|.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+. .+..|.|.+++.+|+|.|+|.|.
T Consensus 196 ~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~-------~~~~L~i~~~~~~d~G~Y~C~a~ 268 (642)
T 1e07_A 196 ILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAH 268 (642)
T ss_pred EEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc-------cCCceEEecccccCCeEEEEEEE
Confidence 99998655 34556777789999999999999999999999999998874 34679999999999999999999
Q ss_pred eCCeeEE--EEEEEEEeeCC--eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 172 NAVGKIS--ASATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 172 n~~g~~~--~~~~L~V~~~p--~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|..|... ..+.|.|..++ .+...+....+..|+.+.|.|.+.+.| +.+.|+++|..+. ...++.+...
T Consensus 269 n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~-----~~~~~~~~~~-- 340 (642)
T 1e07_A 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLP-----VSPRLQLSND-- 340 (642)
T ss_pred eCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCC-----CcCCEEEeCC--
Confidence 9887643 45667776432 222233344566688899999999886 6999999998763 2345555432
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQ 324 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~ 324 (977)
...|.|.++..+|+|.|+ |.|.|..|.. +..+.|.|... |+.....+....+..|+.+.|.|.+.+ .+.+.
T Consensus 341 -~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~ 414 (642)
T 1e07_A 341 -NRTLTLLSVTRNDVGPYE-CGIQNELSVDHSDPVILNVLYG----PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS 414 (642)
T ss_pred -CCEEEEeccCcccCeeEE-EEEeCCCCCcceeeEEEEEEcC----CCCCeecCCceEecCCCcEEEEEEcCccCCCeEE
Confidence 238999999999999999 9999999875 45578888863 333344566778899999999999998 67999
Q ss_pred EEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEE--EEEEE
Q psy574 325 WWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA--SLRFE 379 (977)
Q Consensus 325 W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~--~l~v~ 379 (977)
|+++|..+.. ...|.|.++...|.|.|+|.|.|..|....+. .+.+.
T Consensus 415 W~~~g~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~ 463 (642)
T 1e07_A 415 WLIDGNIQQH--------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463 (642)
T ss_pred EEECCEEcCC--------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEe
Confidence 9999987743 35699999999999999999999998776554 44444
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=395.84 Aligned_cols=359 Identities=25% Similarity=0.419 Sum_probs=293.2
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeec---CCCceEEEecCcEEEEcCCCCCCC-eEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDF---ENSKRLRLVDGTNLAIQDSRKTDD-GRYQ 77 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~---~~~~r~~~~~~g~L~I~~v~~~D~-G~Y~ 77 (977)
..+.|...+.++.+.+|++++|.|.++.+.|. +.+.|+|++..+.. ..++|+.+..+|+|.|.+++.+|+ |.|+
T Consensus 137 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~ 216 (816)
T 3dmk_A 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 216 (816)
T ss_dssp CCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEE
T ss_pred EccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhccceeE
Confidence 45667778888999999999999988544444 68999998876542 246789998899999999999998 9999
Q ss_pred EEEEecCceee---eEeEEEEEEc-----CCeEEeCC--CceEEeCCCeEEEEEEecccCceEEEEEECCeeCC------
Q psy574 78 CVVKNVAGTRE---STDAVLRVLV-----KPYIIRGP--KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP------ 141 (977)
Q Consensus 78 C~a~n~~g~~~---s~~~~l~V~~-----~P~~~~~p--~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~------ 141 (977)
|.+.+...... .....|.|.. +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++....
T Consensus 217 C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~ 296 (816)
T 3dmk_A 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296 (816)
T ss_dssp EEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECC
T ss_pred EEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCccee
Confidence 99997653211 2224566654 34443322 35688999999999999999999999999643321
Q ss_pred -CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 142 -EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 142 -~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
..+.. ..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 297 ~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v 375 (816)
T 3dmk_A 297 LNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 375 (816)
T ss_dssp CSSSEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEE
T ss_pred cCCceE-eccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEE
Confidence 12322 2467999999999999999999999999988899999999988888888899999999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|+++|..+.. ....|.|.+++.+|+|.|+ |.|.|..|....++.|.|.. ...+|.+...+
T Consensus 376 ~W~k~g~~~~~----------------~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~v~~--~~~~p~i~~~~ 436 (816)
T 3dmk_A 376 SWMKDGKAIGH----------------SESVLRIESVKKEDKGMYQ-CFVRNDRESAEASAELKLGG--RFDPPVIRQAF 436 (816)
T ss_dssp EEEETTEECSC----------------CSSEEEESSCCGGGCEEEE-EEEECSSCEEEECCEEECCC--SSCCCEEEEEC
T ss_pred EEEECCEECCC----------------CCCEEEEcCCCHHHCEEEE-EEEECCCCcEEEEEEEEEcc--ccCCCceEecC
Confidence 99999987631 1228999999999999999 99999999877777777754 23478888888
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe----cCc----eEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDG----SLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~----~~~----sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
....+..|+.+.|.|.+.+ .+.+.|+++|..+....++... .++ .|.|.++...|.|.|+|.|.|..|..
T Consensus 437 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 516 (816)
T 3dmk_A 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516 (816)
T ss_dssp CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence 8889999999999999998 6789999999999877666542 222 59999999999999999999999999
Q ss_pred EEEEEEEEECCC
Q psy574 371 SWSASLRFESPT 382 (977)
Q Consensus 371 ~~s~~l~v~~~~ 382 (977)
..++.|.|..++
T Consensus 517 ~~~~~l~V~~~p 528 (816)
T 3dmk_A 517 EHSAKLNVYGLP 528 (816)
T ss_dssp EEEEEEEECSSC
T ss_pred EEEEEEEEecCC
Confidence 999999997653
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=365.89 Aligned_cols=359 Identities=24% Similarity=0.379 Sum_probs=291.9
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEc----CCCCCCCeEEEE
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQ----DSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~----~v~~~D~G~Y~C 78 (977)
+|.|... +.++.+.+|+.++|.|.+ .|.|.+.|.|+|||..+....+.++.+. .++.|.|. +++.+|+|.|+|
T Consensus 16 ~P~i~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C 94 (404)
T 3p3y_A 16 PPTITKQSAKDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC 94 (404)
T ss_dssp CCCEEEECCTTCEECSSSCCCCCEEE-CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEE
T ss_pred CCcccccCCccEEEcCCCCEEEEEEe-cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEE
Confidence 4666653 667899999999999999 8899999999999999865555565554 45677775 889999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC--CCceEEeccceEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~--~~~~~~~~~~~L~ 154 (977)
.|.|..|...+..+.|.|..+|.+... +....+.+|+++.|.|.+ .+.|.+.+.|++++.... ..++....++.|.
T Consensus 95 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~ 174 (404)
T 3p3y_A 95 FARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174 (404)
T ss_dssp EEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEE
T ss_pred EEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEE
Confidence 999998887778889999988866544 456789999999999999 888999999999975442 3455566788999
Q ss_pred EccCccCC-CeEEEEEEEeCCeeE---EEEEEEEEee-------CCeEEecC---CCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 155 LSDVRLED-AGEYVCEAENAVGKI---SASATLTVQM-------APIVRERP---SDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 155 I~~v~~~D-~G~Y~C~a~n~~g~~---~~~~~L~V~~-------~p~~~~~p---~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
|.+++.+| .|.|+|.|.|..+.. ...+.|.|.. +|.+...+ ....+.+|+.++|.|.+.+.|.+.+
T Consensus 175 i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v 254 (404)
T 3p3y_A 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI 254 (404)
T ss_dssp ESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEE
T ss_pred EEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcE
Confidence 99999999 599999999987752 2235566653 23332222 2346889999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|++++..+.. ...... . ....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+
T Consensus 255 ~W~~~~~~~~~------~~~~~~-~--~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~ 319 (404)
T 3p3y_A 255 AWYKKGGDLPS------DKAKFE-N--FNKALRITNVSEEDSGEYF-CLASNKMGSIRHTISVRVKA-----APYWLDEP 319 (404)
T ss_dssp EEEETTBCCCT------TTEEEE-G--GGTEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEE-----EEEEEECC
T ss_pred EEEECCEECCC------Cccccc-c--cCceEEEccCCHhHCEEEE-EEEEeCCCcEEEEEEEEEeC-----CCeeeccC
Confidence 99999987631 111222 1 2238999999999999999 99999999999999999988 78888889
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCC--cEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~--~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l 376 (977)
.+..+..|+.+.|.|.+.+ .+.+.|+++|..+.... ......+++|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 320 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 399 (404)
T 3p3y_A 320 KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFV 399 (404)
T ss_dssp CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEE
T ss_pred CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEE
Confidence 9999999999999999998 77899999999986542 1222346789999999999999999999999999999988
Q ss_pred EEE
Q psy574 377 RFE 379 (977)
Q Consensus 377 ~v~ 379 (977)
.|.
T Consensus 400 ~V~ 402 (404)
T 3p3y_A 400 SVL 402 (404)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=362.26 Aligned_cols=451 Identities=18% Similarity=0.216 Sum_probs=317.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEe------e------cCCCceEEEec---Cc--EEEEcCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPI------D------FENSKRLRLVD---GT--NLAIQDSR 69 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l------~------~~~~~r~~~~~---~g--~L~I~~v~ 69 (977)
..|.++.+.+|++++|.|.+ .+.|.+ .|.|+|++..+ . ....+|+.+.. +| .|.|.+++
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~ 83 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYY-PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83 (585)
T ss_pred cCcceeEEecCCcEEEEEeC-CCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence 46788999999999999999 566543 89999998532 1 11235777653 33 59999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCC-------
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMP------- 141 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~------- 141 (977)
.+|+|.|+|.|.|..+.. +..+.|.|..+|.+...+....+.+|+++.|.|.+.+. |.+.+.|+|++....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~ 162 (585)
T 2ocw_A 84 QDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 162 (585)
T ss_pred cccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence 999999999999887754 56689999999999999999999999999999999754 567899999976432
Q ss_pred -------CCceEEeccc------eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEE
Q psy574 142 -------EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVF 208 (977)
Q Consensus 142 -------~~~~~~~~~~------~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L 208 (977)
.+++.+..++ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++ |....+.+|+.++|
T Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~~~~~G~~v~l 237 (585)
T 2ocw_A 163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGSVTF 237 (585)
T ss_pred cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-----CceeEEcCCCcEEE
Confidence 2455554333 79999999999999999999999988889999998654 34456789999999
Q ss_pred EEEEecCCC---CeEEEE-EcCe---eeeecCC----CccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 209 LCGIEGSPP---PSTFWM-LEGN---RSLIYPG----DRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 209 ~C~~~g~p~---~~i~W~-~~g~---~~~~~~~----~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.+ +.+. +.+.|+ ++|. .+..... ...+++.+... ..|...|.|.+++.+|+|.|+ |.|.|. |.
T Consensus 238 ~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~-C~a~n~-g~ 314 (585)
T 2ocw_A 238 HCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL-CGAHSD-GQ 314 (585)
T ss_pred EEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEE-EEEEcC-CC
Confidence 9997 4444 578886 7773 2211111 12345554432 235458999999999999999 999995 44
Q ss_pred ee-----EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceE----EEEE--CCE--EcC--------
Q psy574 277 DL-----ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSV----QWWR--GER--EVG-------- 333 (977)
Q Consensus 277 ~~-----~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i----~W~~--~g~--~l~-------- 333 (977)
.. ..+.|.|.. +|.+...|....+..|+.+.|.|.+.+ .+.+ .|++ +|. .+.
T Consensus 315 ~~~~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~ 389 (585)
T 2ocw_A 315 LQEGSPIQAWQLFVNE-----ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389 (585)
T ss_pred ccccCceeeEEEEEec-----ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeec
Confidence 43 778888887 677777788888999999999999998 5555 7999 886 442
Q ss_pred -CCCcEEEe---cCce--EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEE
Q psy574 334 -SGPRVNVT---GDGS--LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407 (977)
Q Consensus 334 -~~~~~~~~---~~~s--l~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~ 407 (977)
...++.+. .+++ |.|.++...|+|.|+|.| |..|.....+.|.|...+.... .|....
T Consensus 390 ~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~-------------~~~~~~-- 453 (585)
T 2ocw_A 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK-------------VPGNVT-- 453 (585)
T ss_pred ccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc-------------cCCcee--
Confidence 23455554 2344 999999999999999999 9999888889998876422111 122222
Q ss_pred eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcC
Q psy574 408 NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487 (977)
Q Consensus 408 ~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 487 (977)
......+.|.+.......+ .-.+.|.++..+..............+...........++|.++.....-.|.|.|.|.
T Consensus 454 v~~G~~v~L~C~~~~~~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 531 (585)
T 2ocw_A 454 AVLGETLKVPCHFPCKFSS--YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531 (585)
T ss_pred EecCCcEEEEEEecCCCCC--CccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeC
Confidence 2223456666654322001 11233433332211000000000001222211222357889999998889999999999
Q ss_pred CCCCCC
Q psy574 488 HGLSAP 493 (977)
Q Consensus 488 ~G~s~~ 493 (977)
.|.+..
T Consensus 532 ~G~~~~ 537 (585)
T 2ocw_A 532 HFYGET 537 (585)
T ss_pred CCccEE
Confidence 887643
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=370.85 Aligned_cols=383 Identities=16% Similarity=0.195 Sum_probs=300.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+...+.++.+.+|+.++|.|.+ .+ .|.|+|+|..+. ....+++|.|.+++.+|+|.|+|.+.| |
T Consensus 37 P~i~~~~~~~~v~~G~~v~l~C~~-~~----~v~W~~~~~~~~-------~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g 102 (524)
T 2ec8_A 37 PSIHPGKSDLIVRVGDEIRLLCTD-PG----FVKWTFEILDET-------NENKQNEWITEKAEATNTGKYTCTNKH--G 102 (524)
T ss_dssp CEEESCCSEEECCTTSCEEEEEEC-TT----EEEEEEESSSCC-------EEECSSEEEESSCCSTTCEEEEEEETT--S
T ss_pred CccCCCCceEEEeCCCeEEEEEeC-Cc----eEEEcCCCcccc-------ccCccceEEEcccchhhCEEEEEeecC--C
Confidence 445556678899999999999998 44 899999998771 223467899999999999999999998 4
Q ss_pred eeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEeccceEEEccCccCCC
Q psy574 86 TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPSRSLQLSDVRLEDA 163 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~~~L~I~~v~~~D~ 163 (977)
. +..+.|.|..+|.+...+.+..+.+|+++.|.|.+.+.+.+.|.|++ ++..+.. .++.+..++.|.|.+++.+|+
T Consensus 103 ~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~ 180 (524)
T 2ec8_A 103 L--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180 (524)
T ss_dssp C--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGT
T ss_pred c--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhC
Confidence 3 56788899888877777888899999999999999987778999998 7777754 455556788999999999999
Q ss_pred e-EEEEEEEeCCeeE-EEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCc
Q psy574 164 G-EYVCEAENAVGKI-SASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 164 G-~Y~C~a~n~~g~~-~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~ 236 (977)
| .|+|.|.|..+.. +..+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+.+. .
T Consensus 181 G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~---~ 257 (524)
T 2ec8_A 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ---E 257 (524)
T ss_dssp TCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCC---E
T ss_pred CceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccc---c
Confidence 9 9999999987664 447888886 788898888888999999999999999999886 9999999773110 1
Q ss_pred cccEEEEE--ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC---CceeecCCCcE
Q psy574 237 VDNIQAEI--TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP---ANQTLPLRSEA 311 (977)
Q Consensus 237 ~~~~~~~~--~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p---~~~~v~~g~~~ 311 (977)
..+..... ...+.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...| ....+..|+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~v~~G~~v 331 (524)
T 2ec8_A 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFM-CYANNTFGSANVTTTLEVVD-----KGFINIFPMINTTVFVNDGENV 331 (524)
T ss_dssp EEEEEECSSSCEEEEEEEEESSCCTTTCEEEE-EEEECSSCEEEEEEEEEEES-----SCEEEEEESSCSEEEECTTCCE
T ss_pred ccccccccCCccceEEEEEECCCCHHHCEEEE-EEEEecCCceEEEEEEEEec-----cCceEeecCCCceEEEcCCCcE
Confidence 11111110 0012349999999999999999 99999999998899999997 66665544 36789999999
Q ss_pred EEEEEEcc--Cce-EEEEECCEEcCCCC-cEEEecC-------ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 312 RLRCQVRG--EGS-VQWWRGEREVGSGP-RVNVTGD-------GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 312 ~L~C~~~~--~p~-i~W~~~g~~l~~~~-~~~~~~~-------~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.|.|.+.+ .|. +.|+++|..+.... ++....+ .+|.|.++...|+|.|+|.|.|..|..+.++.|.|..
T Consensus 332 ~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 411 (524)
T 2ec8_A 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411 (524)
T ss_dssp EEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE
T ss_pred EEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec
Confidence 99999998 667 99999999887654 4443322 4799999999999999999999999999999998876
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 381 PTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
+|.... .+. ...+ .+.|...+.....+.|....
T Consensus 412 ~P~i~~----~~~--~~~g---~l~C~~~g~P~p~i~W~~~~ 444 (524)
T 2ec8_A 412 KPEILT----YDR--LVNG---MLQCVAAGFPEPTIDWYFCP 444 (524)
T ss_dssp EEEEEE----EEC--CSSS---CEEEEEEEESCCEEECCCC-
T ss_pred CCeEee----ccc--CcCc---EEEEEEEeecCCEEEEEECC
Confidence 543221 110 1112 66666666666788997764
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=357.17 Aligned_cols=352 Identities=12% Similarity=0.094 Sum_probs=243.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--CcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.+..+|.++.|.+|++++|.|.+ .+.|.+.|.|+|++..+.... ++.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 50 ~~~~~~~~v~V~~G~~v~L~C~v-~g~P~p~i~W~~~~~~l~~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 126 (423)
T 3qs7_E 50 GTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQP--HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126 (423)
T ss_dssp ------CEEEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCCC--BC-----CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred cceeccccEEEecCCcEEEEEEE-EcCCCCeEEEEECCCccCccc--eeccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence 34556678999999999999999 789999999999998874321 111111 1369999999999999999999998
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc-CccCCC
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD-VRLEDA 163 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~-v~~~D~ 163 (977)
|.. +..+.|.|..+|.+.. .....+..|+.+.|.|.+.|.|.|.|.|+|++..+....... ....+.... +...|+
T Consensus 127 g~~-~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~-~~~~~~~~~~l~~~d~ 203 (423)
T 3qs7_E 127 TNY-TILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKVLHELFG 203 (423)
T ss_dssp CEE-EEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCS
T ss_pred CcE-EEEEEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccc-cccccccceEEecccC
Confidence 864 4567888886665421 122345678889999999999999999999987654211110 001111111 157899
Q ss_pred eEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 164 GEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|+|.|.|..|... ..+.|.|..+|.+ .+.+..+.+|+.++|.|.+.| .|.+.|.|+|++..+.. ...+.
T Consensus 204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~-----~~~~~ 276 (423)
T 3qs7_E 204 TDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE-----GNYFE 276 (423)
T ss_dssp SCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCG-----GGEEE
T ss_pred eEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccc-----cceee
Confidence 999999999999754 3477888766655 455778999999999999998 67799999999987631 11111
Q ss_pred EEEc-----cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC--CceeecCCCcEEEE
Q psy574 242 AEIT-----SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP--ANQTLPLRSEARLR 314 (977)
Q Consensus 242 ~~~~-----~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p--~~~~v~~g~~~~L~ 314 (977)
.... ......|.|.+++.+|+|.|+ |.|.|. ....+.|.|.. +|.+...+ ....+..|+.+.|.
T Consensus 277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~A~N~---~~~~~~L~V~~-----~p~i~~~~~~~~~~v~~G~~v~l~ 347 (423)
T 3qs7_E 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYT-CSSSKH---PSQSALVTIVE-----KGFINATNSSEDYEIDQYEEFCFS 347 (423)
T ss_dssp EEEEETTTEEEEEEEEEESSCCTTTCEEEE-EEETTE---EEEEEEEEEES-----SCEEEEC---CEECCCTTCCCCEE
T ss_pred cccccCCceeEEEEEEEEeecCHHHCEEEE-EEEecC---CCceEEEEEEe-----CCcceEcCCCccEEecCCCeEEEE
Confidence 0000 001237999999999999999 999998 77778899987 56666555 34567889999999
Q ss_pred EEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 315 CQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
|.+.+ .|.|.|+++|..+....+.. .....+.+......|+|.|+|.|.|..|..+.++.|.|...
T Consensus 348 C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~ 415 (423)
T 3qs7_E 348 VRFKAYPQIRCTWTFSRKSFPCEQKGL-DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415 (423)
T ss_dssp EEEEEESCCEEEEEETTEEEECBCCBC-SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred EEEEEcCCCeEEEEECCEECCCccccc-cCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence 99999 77999999999885542100 01112223556678999999999999999999999998754
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=362.00 Aligned_cols=379 Identities=11% Similarity=0.097 Sum_probs=262.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.++..+.|.+|++++|+|.+ .+.|...+.|++|+..+... ..+..... .+|.|.+++.+|+|.|+|.|.|..+..
T Consensus 53 ~~~~~~~v~~g~~~~L~c~~-~~~~~~~~~W~~~~~~l~~~--~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~ 129 (527)
T 3qs9_E 53 YEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQ--PHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129 (527)
T ss_dssp ---CEEEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCC--CBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE
T ss_pred eeeeeEEEeccccEEEEEEE-ecCCceeEEEEecCCccCcc--cccCCCcceEEEEEECcCChhhCeeEEEEEEeccccE
Confidence 45557999999999999999 78888999999999987421 12222212 259999999999999999999987653
Q ss_pred eeEeEEEEEEcCCeEEeCC-CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEE
Q psy574 88 ESTDAVLRVLVKPYIIRGP-KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 88 ~s~~~~l~V~~~P~~~~~p-~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y 166 (977)
. ..+.|.|. |.+...+ .......|+.+.|.|.+.|.|.|.|.|++++..+...+.............+..+|+|.|
T Consensus 130 ~-~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y 206 (527)
T 3qs9_E 130 T-ILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI 206 (527)
T ss_dssp E-EEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCE
T ss_pred E-EEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEE
Confidence 3 33344443 4333222 223445688889999999999999999999876542211100111122233457899999
Q ss_pred EEEEEeCCeeEEEE-EEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEE
Q psy574 167 VCEAENAVGKISAS-ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 167 ~C~a~n~~g~~~~~-~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
+|.|.|..|..... +.|.|..+|.+ .|.+..+.+|+.+.|.|.+. +.|.+.|.|++++..+.. ...+....
T Consensus 207 ~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~-----~~~~~~~~ 279 (527)
T 3qs9_E 207 RCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE-----GNYFEMST 279 (527)
T ss_dssp EEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCG-----GGEEEEEE
T ss_pred EEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCC-----Cceeeeee
Confidence 99999999986544 78888877776 66778899999999999996 899999999999986532 11121111
Q ss_pred cc-----CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEE
Q psy574 245 TS-----DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQV 317 (977)
Q Consensus 245 ~~-----~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~ 317 (977)
.. ....+|.|.+++.+|+|.|+ |.|.|. ....+.|.|.. +|.+...+. ...+..|+.+.|.|.+
T Consensus 280 ~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~N~---~~~~~~L~V~~-----~p~i~~~~~~~~~~v~~G~~v~L~C~~ 350 (527)
T 3qs9_E 280 YSTNRTMIRILFAFVSSVARNDTGYYT-CSSSKH---PSQSALVTIVE-----KGFINATNSSEDYEIDQYEEFCFSVRF 350 (527)
T ss_dssp EETTTEEEEEEEEEESSCCGGGCEEEE-EEETTE---EEEEEEEEEC-------CEEECCCSCCEECCCTTCCCCEEEEE
T ss_pred eccCcceeeEEEEEEccCCcccCeEEE-EEEEeC---CCceEEEEEEc-----cCccccccCcccEEEcCCCeEEEEEEE
Confidence 00 01237999999999999999 999998 66777888876 566655543 3567889999999999
Q ss_pred cc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCC
Q psy574 318 RG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395 (977)
Q Consensus 318 ~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~ 395 (977)
.+ .|.|.|+++|..+....+.. ...++|.|.++...|+|.|+|.|.|..|....++.|.|..+|.... .+
T Consensus 351 ~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~----~~--- 422 (527)
T 3qs9_E 351 KAYPQIRCTWTFSRKSFPCEQKGL-DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLA----EA--- 422 (527)
T ss_dssp EEESCCEEEEEETTEEEECBCCBC-SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEE----CC---
T ss_pred EecCCCEEEEEECCEECcCCcccc-cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEE----eC---
Confidence 99 77899999999886654422 2556899999999999999999999999999999999886653221 11
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
. -..+.|...+.....+.|....
T Consensus 423 ---~-~~~l~C~a~g~P~p~i~W~~~~ 445 (527)
T 3qs9_E 423 ---S-ASQASCFSDGYPLPSWTWKKCS 445 (527)
T ss_dssp ---C-CE---EEEECSSCCEEEEECCC
T ss_pred ---C-CCEEEEEEEEEcCCeEEEEECC
Confidence 1 1234566566666789997543
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=368.02 Aligned_cols=357 Identities=17% Similarity=0.232 Sum_probs=274.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEecC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNVA 84 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~~ 84 (977)
.+...|.++.+.+|+.++|.|.+ .+.|.+.|.|+| ||+.+. ...++.+..++.|.|.+++.+|+| .|+|.|.|..
T Consensus 116 ~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~--~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~ 192 (524)
T 2ec8_A 116 KLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLP--KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG 192 (524)
T ss_dssp CSBCCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCC--SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC---
T ss_pred cccccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCcC--CCCceeECCCccEEEeccchhhCCceEEEEEEECC
Confidence 34467778899999999999999 677779999988 888884 345788888899999999999999 9999999987
Q ss_pred ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeC--CCC-ceE------Eecc
Q psy574 85 GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAM--PED-RMS------VLPS 150 (977)
Q Consensus 85 g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l--~~~-~~~------~~~~ 150 (977)
+...+..+.|.|. .+|.+...|.+..+.+|+++.|.|.+.|.|.+. +.|+|++..+ ... +.. ....
T Consensus 193 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
T 2ec8_A 193 KSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 272 (524)
T ss_dssp -CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEE
T ss_pred ceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceE
Confidence 7666667889887 788998999899999999999999999988876 9999999883 221 111 2245
Q ss_pred ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCC---CcEEeeCCeEEEEEEEecCCCCe-EEEEEcC
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS---DLRLEVGRDAVFLCGIEGSPPPS-TFWMLEG 226 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~---~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g 226 (977)
+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+...|. ...+.+|+.++|.|.+.|.|.+. +.|+++|
T Consensus 273 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g 352 (524)
T 2ec8_A 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352 (524)
T ss_dssp EEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSS
T ss_pred EEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECC
Confidence 7899999999999999999999999988899999999998887664 57899999999999999999998 9999999
Q ss_pred eeeeecCCCccccEEEEEcc---CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCce
Q psy574 227 NRSLIYPGDRVDNIQAEITS---DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ 303 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~---~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~ 303 (977)
..+... ..++...... .+.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.
T Consensus 353 ~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~P~i~~~~~-- 420 (524)
T 2ec8_A 353 RTFTDK----WEDYPKSENESNIRYVSELHLTRLKGTEGGTYT-FLVSNSDVNAAIAFNVYVNT-----KPEILTYDR-- 420 (524)
T ss_dssp CBCSSS----BCCEESCCSSSCCEEEEEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEECE-----EEEEEEEEC--
T ss_pred eeccCC----ccceeEEccCCCceeEEEEEEeecCcccCeEEE-EEEEecCceEEEEEEEEEec-----CCeEeeccc--
Confidence 876421 1133222110 02359999999999999999 99999999999999999987 677665443
Q ss_pred eecCCCcEEEEEEEcc--CceEEEEECCEEcC--------CCC---cEEEecCceEEE----eccCCCCCeEEEEEEEcC
Q psy574 304 TLPLRSEARLRCQVRG--EGSVQWWRGEREVG--------SGP---RVNVTGDGSLVL----TDVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 304 ~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~--------~~~---~~~~~~~~sl~I----~~v~~~d~G~Y~C~a~n~ 366 (977)
...| .|.|.+.| .|.|.|++++..+. .+. ......++.+.+ ......|.|.|+|.|.|.
T Consensus 421 -~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~ 496 (524)
T 2ec8_A 421 -LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496 (524)
T ss_dssp -CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECS
T ss_pred -CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcC
Confidence 3445 99999999 77999999987652 111 122344555553 333458999999999999
Q ss_pred CCceEEEEEEEEECCC
Q psy574 367 HGSASWSASLRFESPT 382 (977)
Q Consensus 367 ~G~~~~s~~l~v~~~~ 382 (977)
.|..+..+.|.|.+.+
T Consensus 497 ~G~~~~~~~l~V~e~~ 512 (524)
T 2ec8_A 497 VGKTSAYFNFAFKGNN 512 (524)
T ss_dssp SCEEECCCCCCC----
T ss_pred CCceEEEEEEEEecCC
Confidence 9999999988888654
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=348.45 Aligned_cols=357 Identities=17% Similarity=0.223 Sum_probs=264.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+..+|.++.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+. .....|+....+ ++|.|.+++.+|
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAED 81 (523)
T ss_pred ccccCCceEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhh
Confidence 4456888999999999999999 77889999999974 2211 112356665433 379999999999
Q ss_pred CeEEEEEEEecCcee--eeEeEEEEE----EcCCeEEeCCCceEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCc
Q psy574 73 DGRYQCVVKNVAGTR--ESTDAVLRV----LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDR 144 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~--~s~~~~l~V----~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~ 144 (977)
+|.|+|.|.|..|.. .+..+.|.| ..+|.+...+....+.+|+.+.|.|.+.|.|.+ .|.|+|++..+..+.
T Consensus 82 ~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 161 (523)
T 2rcj_C 82 ESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV 161 (523)
T ss_pred CEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCce
Confidence 999999999976532 234567888 456777777777778899999999999887653 999999998886542
Q ss_pred eEE----ecc------ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE----eeCCeEEecCCCcEEeeCCeEEEEE
Q psy574 145 MSV----LPS------RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV----QMAPIVRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 145 ~~~----~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V----~~~p~~~~~p~~~~v~~G~~v~L~C 210 (977)
... ..+ ..|.|.++..+|+|.|+|.|.|..+.....+.+.+ ..+|.+...+....+.+|+.++|.|
T Consensus 162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C 241 (523)
T 2rcj_C 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGC 241 (523)
T ss_pred EeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEE
Confidence 211 111 36999999999999999999999887665555432 3566666444455678999999999
Q ss_pred EEecC-CCC-eEEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 211 GIEGS-PPP-STFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 211 ~~~g~-p~~-~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
.+.|. |.+ .|.|+++|..+..... ...+.+.. .+.|.|.+++.+| |.|+ |.|.|..|.....+.|.
T Consensus 242 ~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~------~s~L~i~~~~~~d-G~Y~-C~a~n~~g~~~~~~~l~ 313 (523)
T 2rcj_C 242 LVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSL------SSVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKRVE 313 (523)
T ss_pred EEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEE------EEEEEechhhcCC-ceEE-EEEEeCCCCcceEEecC
Confidence 99886 777 8999999976421110 01111111 2489999999999 9999 99999999877777776
Q ss_pred EECCCCCCCCeEEeCCCcee-ecCCCcEEEEEEEcc-C-----ceEEEEECCEEcCCCCcE--EEecC------ceEEEe
Q psy574 285 VSGPDPNPPPVILFGPANQT-LPLRSEARLRCQVRG-E-----GSVQWWRGEREVGSGPRV--NVTGD------GSLVLT 349 (977)
Q Consensus 285 V~~~~~~~pp~i~~~p~~~~-v~~g~~~~L~C~~~~-~-----p~i~W~~~g~~l~~~~~~--~~~~~------~sl~I~ 349 (977)
|... |..+...|.... +..|+.+.|.|.+.+ + +.|.|+++|..+...... ....+ +.|.|.
T Consensus 314 v~~~----P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~ 389 (523)
T 2rcj_C 314 PLSL----PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL 389 (523)
T ss_pred CCcC----ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEEC
Confidence 6542 334455565454 788999999999998 2 389999999988654321 11222 248888
Q ss_pred ccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 350 DVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 350 ~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+...|.|.|+|.|.|..+.......+.
T Consensus 390 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 390 HQNWLDGKEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred HHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence 8999999999999999888765555454
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=350.73 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=279.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----------cCCCceEEEecCc------EEEEcC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------FENSKRLRLVDGT------NLAIQD 67 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----------~~~~~r~~~~~~g------~L~I~~ 67 (977)
.|.|...|..+.+.+|+.++|.|.+..+.|.+.|.|+|++..+. .....|+.+..++ +|.|.+
T Consensus 112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 191 (585)
T 2ocw_A 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191 (585)
T ss_pred CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEcc
Confidence 35677788889999999999999994456678899999885421 0123566666544 699999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc---eEEEEE-ECCeeC---
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV---LTVHWK-RLGSAM--- 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~---~~i~W~-k~~~~l--- 140 (977)
++.+|+|.|+|.|.|..|. .+..+.|.|..+| |..+.+.+|+.+.|.|.+. .+. +.+.|+ +++...
T Consensus 192 v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~ 264 (585)
T 2ocw_A 192 LRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE-----PELVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVV 264 (585)
T ss_pred CChhHCeEEEEEeccCCcc-ccceEEEEEccCC-----CceeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceE
Confidence 9999999999999998876 4466788887643 4556788999999999984 333 789997 777321
Q ss_pred ----------CCCceEEec---cc--eEEEccCccCCCeEEEEEEEeCCeeEE-----EEEEEEEeeCCeEEecCCCcEE
Q psy574 141 ----------PEDRMSVLP---SR--SLQLSDVRLEDAGEYVCEAENAVGKIS-----ASATLTVQMAPIVRERPSDLRL 200 (977)
Q Consensus 141 ----------~~~~~~~~~---~~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~L~V~~~p~~~~~p~~~~v 200 (977)
..+++.+.. ++ .|.|.+++.+|+|.|+|.|.|. |... ..+.|.|..+|.+...|....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~ 343 (585)
T 2ocw_A 265 VNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKG 343 (585)
T ss_pred EeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEE
Confidence 123444432 34 7999999999999999999995 4433 7889999999999888888999
Q ss_pred eeCCeEEEEEEEecCCCCeE----EEEE--cCe--eeeecC----CCccccEEEEEc-cCCceEEEEeecccCCCCeEEE
Q psy574 201 EVGRDAVFLCGIEGSPPPST----FWML--EGN--RSLIYP----GDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~~i----~W~~--~g~--~~~~~~----~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.+|+.++|.|.+.+.|.+.+ .|++ +|. .+.... ....+++.+... ..|...|.|.+++.+|+|.|+
T Consensus 344 ~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~- 422 (585)
T 2ocw_A 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW- 422 (585)
T ss_pred EeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEE-
Confidence 99999999999999999977 7999 776 443211 112445655532 235456999999999999999
Q ss_pred EEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEc----c--CceEEEEECCEEcCCCCc----
Q psy574 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR----G--EGSVQWWRGEREVGSGPR---- 337 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~----~--~p~i~W~~~g~~l~~~~~---- 337 (977)
|.| |..|.....+.|.|... +|.+. .|.+..+..|+.+.|.|.+. + .+.|.|+++|..+.....
T Consensus 423 C~a-n~~g~~~~~~~l~V~~~----~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~ 496 (585)
T 2ocw_A 423 CLT-NGDTLWRTTVEIKIIEG----EPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS 496 (585)
T ss_pred Ecc-cCCCccceeEEEEEecC----ccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCC
Confidence 999 99998888899999873 34433 36788899999999999997 3 567999999987743311
Q ss_pred ---EEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEE-EEEEEEECCC
Q psy574 338 ---VNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASW-SASLRFESPT 382 (977)
Q Consensus 338 ---~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~-s~~l~v~~~~ 382 (977)
+.+..+ ++|.|.++...|+|.|+|.|.|..|.... .+.|.|.+++
T Consensus 497 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 497 KAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred cceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 222222 47999999999999999999999997654 4889998764
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=320.38 Aligned_cols=359 Identities=20% Similarity=0.294 Sum_probs=273.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeCCC------CceEEe---ccceEEEccCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAMPE------DRMSVL---PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l~~------~~~~~~---~~~~L~I~~v~~~D~G~Y~ 167 (977)
+|.+.. +.+..+.+|+++.|.|.+.|.|.+.|.|+|+ +..+.. +++.+. ..+.|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 466666 6677888999999999999999999999999 777643 455554 3468999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|.|.|..|..+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ....++.+... .
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~---~~~~~~~~~~~-~ 155 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA---KNTTNLKTYST-G 155 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSC---TTCTTEEEEEC-S
T ss_pred EEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCc---ccCceEEEecc-C
Confidence 9999999999999999999999988776666789999999999999999999999999987642 12235555543 3
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc--
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG-- 321 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p-- 321 (977)
+.+.|.|.++...|+|.|+ |.|.|..|.....+.|.+...+. +|... ......+..+.|.|.... .+
T Consensus 156 ~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~P~--~P~~~----~~~~~~~~~~~l~w~~p~~~~g~pi~ 228 (389)
T 2jll_A 156 RKMILEIAPTSDNDFGRYN-CTATNHIGTRFQEYILALADVPS--SPYGV----KIIELSQTTAKVSFNKPDSHGGVPIH 228 (389)
T ss_dssp SCEEEEECCCSTTSSEEEE-EEEEETTEEEEEEEEEEECCCCC--CCEEE----EEEEECSSCEEEEEECCSCCTTSCEE
T ss_pred CEEEEEECCCChhhCEEEE-EEEEcCCCcEEEEEEEEecCCCC--CCcce----EEeeccCCEEEEEEeCCCCCCCcceE
Confidence 4468999999999999999 99999999988888887765321 22111 112234567899997432 23
Q ss_pred --eEEEEECCEEcCCCCcEEEe-cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCC
Q psy574 322 --SVQWWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYP 398 (977)
Q Consensus 322 --~i~W~~~g~~l~~~~~~~~~-~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p 398 (977)
.+.|.+++..... .+... ....+.|.++.+.+.|.|+|.|.|..|.+..+..+.+...+ ..+|
T Consensus 229 ~y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~------------~~~p 294 (389)
T 2jll_A 229 HYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP------------VREP 294 (389)
T ss_dssp EEEEEEEETTCSCCE--EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC------------CCCC
T ss_pred EEEEEEEECCCcccE--EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC------------CCCC
Confidence 4678877642110 11111 23569999999999999999999999987666655554321 1356
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEE-eceecCcCeEEEEccCCCCe
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR-VATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~i~~L~p~t~ 477 (977)
.+|. +.....+.+++.|+|.++.+ +++++.+|.|+|+..+.. .|.. ........++++.+|.|++.
T Consensus 295 ~~p~-~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~L~~~t~ 361 (389)
T 2jll_A 295 SPPS-IHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRSKDKE-----------DQWLEKKVQGNKDHIILEHLQWTMG 361 (389)
T ss_dssp CCCC-EEEEEETTTEEEEEECCCCC-CSSCCCEEEEEEEC----------------CCBCCEECTTCCEEEECSCCTTCE
T ss_pred CCCc-cccccCcCCEEEEEEECCCC-CCCcccEEEEEEEeCCCC-----------cceeEeeccCCcceEEeCCcCCCCE
Confidence 7774 66666789999999998876 788999999999874433 4542 22445667899999999999
Q ss_pred EEEEEEEEcCCCCCCCCCC
Q psy574 478 YTFLVRALNSHGLSAPSPL 496 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~ 496 (977)
|.|+|+|.|..|.|.+|..
T Consensus 362 Y~~~V~A~n~~G~s~~s~~ 380 (389)
T 2jll_A 362 YEVQITAANRLGYSEPTVY 380 (389)
T ss_dssp EEEEEEEEC-CCBCCCEEE
T ss_pred EEEEEEEEcCCcCCCceee
Confidence 9999999999999988754
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=307.09 Aligned_cols=276 Identities=25% Similarity=0.470 Sum_probs=238.4
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a 80 (977)
++..|.|.+.|.++.+.+|+.++|.|.+ .+.|.+.|.|+|+|..+......++.... ++.|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~pP~~~~~p~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 2 AMAPPFFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCCCEEEECCCCEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CcCCCEEEccccceEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 4567899999999999999999999999 78899999999999999655555555544 367999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCC-ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPK-DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQL 155 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~-~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I 155 (977)
.|..|. .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+. ....|.|
T Consensus 81 ~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i 159 (284)
T 2rik_A 81 SNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM 159 (284)
T ss_dssp EETTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred EECCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEE
Confidence 998876 45778999999998877654 457899999999999999999999999999988654 33322 3467999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~ 235 (977)
.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+.
T Consensus 160 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~----- 234 (284)
T 2rik_A 160 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR----- 234 (284)
T ss_dssp CSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC-----
T ss_pred CCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc-----
Confidence 999999999999999999999999999999999999888888899999999999999999999999999998774
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
...++.+... ++...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 235 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 235 SGKKYKIMSE-NFLTSIHILNVDSADIGEYQ-CKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp BTTTEEEEEE-TTEEEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEEc-CCEEEEEEcCCCcccCEEEE-EEEEeCCCceeEEEEEEEc
Confidence 3345555443 34468999999999999999 9999999999999988886
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=342.24 Aligned_cols=332 Identities=14% Similarity=0.116 Sum_probs=238.9
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
.....|+.++|.|.+ .|.|.|.|.|++++..+.... ....+ ...+..++.+|+|.|+|.|.|..|...+..+
T Consensus 149 ~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~ 222 (527)
T 3qs9_E 149 YFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCK-----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222 (527)
T ss_dssp EEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECE
T ss_pred cEEecCCceEEEEEE-ceecCCeEEEEECCCCCcccc-----ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEE
Confidence 455678889999999 899999999999887763111 11111 1223345689999999999999998777668
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceE----------EeccceEEEccCccC
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMS----------VLPSRSLQLSDVRLE 161 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~----------~~~~~~L~I~~v~~~ 161 (977)
.|.|..+|.+ .|.+..+.+|+++.|.|.+. |.|.+.|.|+|++..+...... .....+|.|.+++.+
T Consensus 223 ~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 300 (527)
T 3qs9_E 223 TIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300 (527)
T ss_dssp EEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGG
T ss_pred EEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcc
Confidence 8888888776 67788999999999999996 8999999999999887653211 123356999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
|+|.|+|.|.|. .++.+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.|.|.|+|+|..+.... +
T Consensus 301 DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~-----~ 372 (527)
T 3qs9_E 301 DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----K 372 (527)
T ss_dssp GCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC-----C
T ss_pred cCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc-----c
Confidence 999999999987 67888999998888776653 3567889999999999999999999999998874321 1
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~ 319 (977)
+. .+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+. ...|.|.+.+
T Consensus 373 ~~-----~~~~~L~I~~v~~~D~G~Yt-C~A~N~~g~~~~~~~L~V~~-----~P~i~~~~~--------~~~l~C~a~g 433 (527)
T 3qs9_E 373 GL-----DNGYSISKFCNHKHQPGEYI-FHAENDDAQFTKMFTLNIRR-----KPQVLAEAS--------ASQASCFSDG 433 (527)
T ss_dssp BC-----SSSSEEEEECCCTTCCSCEE-EEEEETTEEEEEEEEEC--C-----CCEEEECCC--------CE---EEEEC
T ss_pred cc-----cCCcEEEEecCCcccCEEEE-EEEEeCCCcEEEEEEEEEec-----CCeEEEeCC--------CCEEEEEEEE
Confidence 11 12238999999999999999 99999999999999999987 777766543 2357999999
Q ss_pred --CceEEEEECCEEcCCCCc-------------EEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 320 --EGSVQWWRGEREVGSGPR-------------VNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 320 --~p~i~W~~~g~~l~~~~~-------------~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
.|.|.|++++........ ...... ....+.-....|.|.|+|.|.|..|..+..+.|.|..+
T Consensus 434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p 511 (527)
T 3qs9_E 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511 (527)
T ss_dssp SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence 678999988664421100 000010 11223223345999999999999999999998877643
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=334.19 Aligned_cols=331 Identities=16% Similarity=0.192 Sum_probs=242.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+...|.+..+.+|++++|.|.+ .+.|.+ .|.|+|||+.+.... +.....++.|.|.+++.+|+|.|+|.|.|..
T Consensus 89 ~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 165 (450)
T 1z7z_I 89 VELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREP--AVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165 (450)
T ss_dssp EEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEE--CCTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred ceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeeccc--ccccccceEEEEEeeccccCceEEEEEEccc
Confidence 3367777889999999999999 677776 999999999985322 1111124589999999999999999999987
Q ss_pred cee-------eeEeEEEEEEcC----CeEEeCCCceEEeCCCeEEEEEEeccc-C--ceEEEEEECCeeCCCCceEEecc
Q psy574 85 GTR-------ESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSVGGD-A--VLTVHWKRLGSAMPEDRMSVLPS 150 (977)
Q Consensus 85 g~~-------~s~~~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~v~g~-p--~~~i~W~k~~~~l~~~~~~~~~~ 150 (977)
|.. .+....|.|... |.+.. ...+.+|+.+.|.|.+.|. | .+.+.|++++..+.. +.....+
T Consensus 166 g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-~~~~~~~ 241 (450)
T 1z7z_I 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGND 241 (450)
T ss_dssp GGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-EEEEETT
T ss_pred CCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-eEEecCC
Confidence 632 124445666533 22221 1688999999999999888 7 789999999998876 4433333
Q ss_pred ceEEEc---cCccCCCe--EEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc
Q psy574 151 RSLQLS---DVRLEDAG--EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225 (977)
Q Consensus 151 ~~L~I~---~v~~~D~G--~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~ 225 (977)
.+.+. +++.+|+| .|+|.|.|..|.....+.|.|...|.....+....+.+|+.++|.|.+. |.+.+.| +
T Consensus 242 -~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~--p~p~i~W--~ 316 (450)
T 1z7z_I 242 -SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--N 316 (450)
T ss_dssp -EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC-------------
T ss_pred -ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecC--CCCEeEE--C
Confidence 22222 77999999 9999999999998889999998733333334456899999999999998 8889999 6
Q ss_pred CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCC-c---eeEEEEEEEECCCCCCCCeEEeCC-
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-S---DLARASLTVSGPDPNPPPVILFGP- 300 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-~---~~~~~~l~V~~~~~~~pp~i~~~p- 300 (977)
|..+.. . +....|.|.++..+|+|.|+ |.|.|..+ . ....+.|.|.. +|.+...+
T Consensus 317 g~~~~~-~-------------~~~~~L~i~~~~~~d~G~Y~-C~a~n~~~g~~~~~~~~~~l~V~~-----~P~~~~~~~ 376 (450)
T 1z7z_I 317 GVPAQP-L-------------GPRAQLLLKATPEDNGRSFS-CSATLEVAGQLIHKNQTRELRVLY-----GPRLDERDC 376 (450)
T ss_dssp ---------------------CCCCCEEEECCGGGTTCEEE-EEEEEEETTEEEEEEEEEECEEEE-----EEECCSTTS
T ss_pred CEEcCC-C-------------CceEEEEEecCcccCCceEE-EEEEcCCCCcccccceeEEEEEec-----CCceeeccC
Confidence 765411 0 12238999999999999999 99997665 3 34667888877 55555443
Q ss_pred -CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 301 -ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 301 -~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+..+..|+.+.|.|.+.| .|.+.|+++|..+... +.+. .+...|+|.|+|.|.|..|..+.++.|.
T Consensus 377 p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~--------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 446 (450)
T 1z7z_I 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVN 446 (450)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC--------CCeE--eEehhhCeEEEEEEEeCCCceeEEEEEE
Confidence 6778999999999999998 7799999999744322 2222 5778899999999999999999999999
Q ss_pred EEC
Q psy574 378 FES 380 (977)
Q Consensus 378 v~~ 380 (977)
|..
T Consensus 447 V~~ 449 (450)
T 1z7z_I 447 VLS 449 (450)
T ss_dssp EEC
T ss_pred EEc
Confidence 874
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=327.56 Aligned_cols=318 Identities=14% Similarity=0.161 Sum_probs=249.2
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee------------cCCCceEEEec------CcEEEEcCCCCCCCeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------------FENSKRLRLVD------GTNLAIQDSRKTDDGR 75 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------------~~~~~r~~~~~------~g~L~I~~v~~~D~G~ 75 (977)
.+.+.+|++++|.|.+ .+.|.+.|.|+|++..+. .....|+.+.. +.+|.|.+++.+|+|.
T Consensus 3 ~v~~~~G~~v~L~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 3 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEEETTSCEEECCCC-TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred eEEEeCCCeEEEEEEe-cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 4689999999999998 689999999999986421 12245666542 4579999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|+|.|.|.. ..+.|.|.. +...|. ..+.+|+++.|.|.+.+.|.+.+.|+|++..+ ......|.|
T Consensus 82 Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i 146 (363)
T 1wio_A 82 YICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV 146 (363)
T ss_dssp EEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEE
T ss_pred EEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEE
Confidence 999998753 356777764 333443 46789999999999988999999999997654 236688999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-----CCCCeEEEEEcCeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-----SPPPSTFWMLEGNRSL 230 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-----~p~~~i~W~~~g~~~~ 230 (977)
.+++.+|+|.|+|.|.|..+.....+.|.|..+|... ....+.+|+.++|.|.+.+ .|.+.+.|+++|..+.
T Consensus 147 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~ 223 (363)
T 1wio_A 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223 (363)
T ss_dssp CSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCC
T ss_pred eeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCcc
Confidence 9999999999999999998888888888888666533 4557889999999998877 7788999999997653
Q ss_pred ecC---CCccccEEEEEc---------cCCceEEEEeecccCCCCeEEEEEEEcC--CCceeEEEEEEEECCCCCCCCeE
Q psy574 231 IYP---GDRVDNIQAEIT---------SDGMNLLKIQNVSRTAAPLIILCLGVNA--AGSDLARASLTVSGPDPNPPPVI 296 (977)
Q Consensus 231 ~~~---~~~~~~~~~~~~---------~~g~s~L~I~~v~~~d~G~Y~~C~a~n~--~g~~~~~~~l~V~~~~~~~pp~i 296 (977)
... .....++.+... .++...|.|.++..+|+|.|+ |.|.|. .|.....+.|.|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~n~~~~g~~~~~~~l~V~~v-------- 294 (363)
T 1wio_A 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN-LTLALEAKTGKLHQEVNLVVMRA-------- 294 (363)
T ss_dssp CCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEE-EEECBTTTTCCEEEEEEEEEEEE--------
T ss_pred ceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEE-EEEEEhhhcCeEEEEEeEEEEEe--------
Confidence 200 000334444321 123459999999999999999 999999 998888888888731
Q ss_pred EeCCCceeecCCCcEEEEEEEcc--Cce--EEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 297 LFGPANQTLPLRSEARLRCQVRG--EGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 297 ~~~p~~~~v~~g~~~~L~C~~~~--~p~--i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
.|+.+.|.|.+.+ .|. +.|++++..+.. .+.|.|.++...|+|.|+|.|.|. |....
T Consensus 295 ----------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~--------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~ 355 (363)
T 1wio_A 295 ----------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV--------SKREKAVWVLNPEAGMWQCLLSDS-GQVLL 355 (363)
T ss_dssp ----------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE--------EESSSEEEESSCCSEEEEEEECSS-SSCCE
T ss_pred ----------cCCCeeEEEEEccccCCCccEEEEeCCCceee--------eeeeeeeeeccccceeEEEEEecC-CeEEE
Confidence 1888999999999 566 999999976642 345788999999999999999964 56666
Q ss_pred EEEEEE
Q psy574 373 SASLRF 378 (977)
Q Consensus 373 s~~l~v 378 (977)
+..+.|
T Consensus 356 ~~~~~V 361 (363)
T 1wio_A 356 ESNIKV 361 (363)
T ss_dssp EEEEEE
T ss_pred ecceEe
Confidence 666665
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=360.25 Aligned_cols=534 Identities=16% Similarity=0.158 Sum_probs=346.2
Q ss_pred EeCCCceEEeCCCeEEEEEEec-------ccCceEEEEEECCeeCCCCceEEe--ccceEEEccCccCCCeEEEEEEEeC
Q psy574 103 IRGPKDTTVSASSIIVFECSVG-------GDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~-------g~p~~~i~W~k~~~~l~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
...|.+..+.+|++++|.|.+. +.+.+.|.|++++..++...+.+. ....|+|.++...|.+ |+|.+...
T Consensus 7 ~i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~ 85 (589)
T 3l5h_A 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTF 85 (589)
T ss_dssp CCSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred EEecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccC
Confidence 3467788899999999999996 667789999999988876554433 2357999999988765 77987642
Q ss_pred Ce--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE--------
Q psy574 174 VG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE-------- 243 (977)
Q Consensus 174 ~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~-------- 243 (977)
.. .....+.|.|..+| +....|.|...+.....+.|....... ....|.+.
T Consensus 86 ~~~~~~~~~~~l~v~~pP-------------~~P~nl~c~~~~~~~~~~~W~~~~~~~------~~~~y~l~~~~~~~~~ 146 (589)
T 3l5h_A 86 GQLEQNVYGITIISGLPP-------------EKPKNLSCIVNEGKKMRCEWDGGRETH------LETNFTLKSEWATHKF 146 (589)
T ss_dssp TCC-CCCCCCCCCC-CCC-------------CCCEEEEEEEETTSCEEEEEECCSCCS------SCEEEEECCBCSSSBC
T ss_pred CCcccEEEeEEEeccCCC-------------CCCEeeEEEECCCceEEEEECCCCcCC------cCceEEEEEEEcCCCc
Confidence 11 12233445454443 344568888877666677887643210 01111111
Q ss_pred ----EccCCceEEEEe-ecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCCCceeec----CCCcEEE
Q psy574 244 ----ITSDGMNLLKIQ-NVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGPANQTLP----LRSEARL 313 (977)
Q Consensus 244 ----~~~~g~s~L~I~-~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p~~~~v~----~g~~~~L 313 (977)
....+.....|. ++.......|. |.|.|..|.... ...+.+... ....+|.+..+. ....+.|
T Consensus 147 ~~c~~~~~~~~~c~~~~~l~~~~~Y~~~-v~a~n~~G~~~s~~~~~~~~~~------~~p~pP~~~~~~~~~~~~~~v~l 219 (589)
T 3l5h_A 147 ADCKAKRDTPTSCTVDYSTVYFVNIEVW-VEAENALGKVTSDHINFDPVYK------VKPNPPHNLSVINSEELSSILKL 219 (589)
T ss_dssp CCEECBTTBSSCCBCCSCCCSSSCEEEC-EEEEESSCCBCCCCEEECGGGS------EECCCCCSCEEECTTTCTTCEEE
T ss_pred ccCCCCCCCcEEEEECCCCchheeEEEE-EEEEeCCCCcccccEEEccccE------EEcCCCceEEEEecCCCCCeEEE
Confidence 011112234444 34444556677 899999987532 222222211 112234444441 2345666
Q ss_pred EEEEcc---Cc----eEEEEECCEEcCCCC-c-EEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE---EEEEEEECC
Q psy574 314 RCQVRG---EG----SVQWWRGEREVGSGP-R-VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW---SASLRFESP 381 (977)
Q Consensus 314 ~C~~~~---~p----~i~W~~~g~~l~~~~-~-~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~---s~~l~v~~~ 381 (977)
.+.... .+ .|.|...+....... . ........+.|.++.+...+.|++.|.|..|.+.+ +..+.+...
T Consensus 220 ~W~~p~~~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~ 299 (589)
T 3l5h_A 220 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299 (589)
T ss_dssp ECCCCGGGGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCC
T ss_pred EeCCCCCCCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccC
Confidence 665433 11 344544432110000 0 00012346889999999999999999998886533 222222211
Q ss_pred CCCCCcccCCCCCCCCC-CCCCCCeEE----eeCCCceEEEEEcCC-CCCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 382 TNPNIGFFRAPEPSTYP-GPPTKPTLV----NQTANGLTLAWSRNN-QIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 382 ~~~~~~~~~~~~~~~~p-~~P~~~~v~----~~~~~sv~lsW~~p~-~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
...| .+|..+... ..+.+++.|+|.++. ...++.+.+|.|+++..... |
T Consensus 300 -------------~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~------------~ 354 (589)
T 3l5h_A 300 -------------EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH------------L 354 (589)
T ss_dssp -------------CCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSC------------C
T ss_pred -------------ccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCC------------c
Confidence 1233 456544332 346789999999743 34778999999998654332 2
Q ss_pred EEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHH
Q psy574 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~ 535 (977)
.. .......+++ |.+++.|.|+|+|.|..|.|.++..... . .+.+
T Consensus 355 ~~--~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~~~--~-~~~~---------------------------- 399 (589)
T 3l5h_A 355 QN--YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIP--A-CDFQ---------------------------- 399 (589)
T ss_dssp CB--CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCCCC--C-TTCC----------------------------
T ss_pred ee--eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEEee--c-cccc----------------------------
Confidence 22 1233344444 8899999999999999999987753221 1 0001
Q ss_pred hhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEE-eecCccceEEECCCCCCcEEE
Q psy574 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTV-LHAGEASGFLVTGLAHYSRYE 614 (977)
Q Consensus 536 ~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~ 614 (977)
.+.++.++++... .+++.|+|++|.. .+.+|.|+|+..+....-..... ........+.+.+|+|++.|.
T Consensus 400 -------~~~p~~~l~~~~~-~~si~l~W~~p~~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~ 470 (589)
T 3l5h_A 400 -------ATHPVMDLKAFPK-DNMLWVEWTTPRE-SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 470 (589)
T ss_dssp -------CCSCCCSCEEEEC-SSSEEEECCCCSS-CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEE
T ss_pred -------CCCCcceEEEEEC-CCeEEEEEECCCC-CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEE
Confidence 0111234555554 6899999999954 79999999998875322111111 122344567779999999999
Q ss_pred EEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe
Q psy574 615 FFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694 (977)
Q Consensus 615 ~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~ 694 (977)
|+|+|.|..|.|..+ .+.+.|.+.+|..+| ++++...+.+++.|+|++|+....+|.|.+|.|+|+..+.... ...+
T Consensus 471 ~~V~A~~~~g~g~~~-~~~~~t~~~~P~~pp-~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~-~~~~ 547 (589)
T 3l5h_A 471 ITVTPVYADGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET-AVNV 547 (589)
T ss_dssp EEECBEETTEECCCE-EEEEESSCCCCSSCC-CCCEECCCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSSCCCC-CEEE
T ss_pred EEEEEEeCCcccCCE-EEEEEeccCCCCCCC-eEEEeecccceEEEEecCCCHHHcCccceeEEEEEEeCCCCeE-EEEe
Confidence 999999999999775 477889999998666 6888888899999999997667889999999999988653322 4566
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
.++.++++|.+|+|++.|.|+|+|.|.+| |++|.++.|+|.
T Consensus 548 ~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-~~~S~~~~~~T~ 588 (589)
T 3l5h_A 548 DSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 588 (589)
T ss_dssp CTTCCBCCBCSCCSSCCEECCEEEEETTE-EEECCCCEECCC
T ss_pred CCcccEEEecCCCCCCEEEEEEEEEeCCC-CCCCCCeEEecC
Confidence 78899999999999999999999999999 999999999875
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=336.33 Aligned_cols=366 Identities=18% Similarity=0.239 Sum_probs=259.1
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeCC--EEee----------cCCCceEEEec---CcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKNG--HPID----------FENSKRLRLVD---GTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~g--~~l~----------~~~~~r~~~~~---~g~L~I~~ 67 (977)
.|...|.++.+.+|++++|.|.+ .+.|. +.|.|+|++ ..+. .....|+.+.. ..+|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDP 81 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESS
T ss_pred ceEecCCeEEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCC
Confidence 45667889999999999999998 67765 489999963 3221 12235666553 24799999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPE 142 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~ 142 (977)
++.+|+|.|+|.|.|..+...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.| .|.+ .|.|+|++..+..
T Consensus 82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~ 161 (438)
T 1qgc_4 82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN 161 (438)
T ss_dssp CCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred CcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence 9999999999999998765444556777763 666665444444457889999999976 6776 9999999988865
Q ss_pred CceE---E--------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE
Q psy574 143 DRMS---V--------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211 (977)
Q Consensus 143 ~~~~---~--------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~ 211 (977)
.... . ...+.|.|.++..+|+|.|+|.|.|..+.......+.+..++.....|....+.+|+.++|.|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~ 241 (438)
T 1qgc_4 162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCT 241 (438)
T ss_dssp TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEE
T ss_pred CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEE
Confidence 5111 1 1134799999999999999999999887643333333323334444567778999999999999
Q ss_pred EecCC--CCeEEEEEc--Ceeeeec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 212 IEGSP--PPSTFWMLE--GNRSLIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 212 ~~g~p--~~~i~W~~~--g~~~~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+.|.| .+.+.|+|+ +..+... .....+++.+.... .+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 242 ~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~n~~ 320 (438)
T 1qgc_4 242 ASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYY-CVRREDG 320 (438)
T ss_dssp EESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEE-EEECCSS
T ss_pred EcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEE-EEEEccC
Confidence 99988 679999997 5433210 01124577766532 23468999999999999999 9999854
Q ss_pred C-----ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---Cc-eEEEEECCEEcCCC--CcEEEe--
Q psy574 275 G-----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EG-SVQWWRGEREVGSG--PRVNVT-- 341 (977)
Q Consensus 275 g-----~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p-~i~W~~~g~~l~~~--~~~~~~-- 341 (977)
+ .....+.|.|..... .+|.+...+....+..|+.++|.|.+.+ .+ .+.|+++|..+... ..+...
T Consensus 321 ~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~ 399 (438)
T 1qgc_4 321 GDEGFAYWGQGTVVTVSAAKT-TPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL 399 (438)
T ss_dssp SCCCCCSBCCCEEEEECSSCC-BCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTE
T ss_pred CCccceeeCCCEEEEEecCCC-CCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCc
Confidence 4 223446777775322 2444433333445678999999999988 23 89999999876421 222111
Q ss_pred --cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy574 342 --GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 342 --~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l 376 (977)
-.+.|.|..+...| |.|+|.|.|..|.......+
T Consensus 400 ~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 400 YTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence 11258888888778 99999999999986655443
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=329.88 Aligned_cols=338 Identities=15% Similarity=0.219 Sum_probs=245.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeE-----EEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTL-----VWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v-----~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++.++|.++.+.+|++++|.|.+ .+ |.+.+ .|+|++..+.. .+ .+.|.|.+++. |+| |+|.|.
T Consensus 1 ~i~~~P~~~~v~~G~~v~L~C~~-~g-p~p~~~~~~~~w~k~~~~~~~---~~-----~~~l~i~~v~~-d~g-Y~C~a~ 68 (450)
T 1z7z_I 1 QTSVSPSKVILPRGGSVLVTCST-SC-DQPMLLGIETPLPKKELLLPG---NN-----RKVYELSNVQE-DSQ-PMCYSN 68 (450)
T ss_dssp CCEEESSEEEEETTEEEEEEEEC-CS-SCCCEEEECSSSCEEECCSST---TT-----EEEEEEEEECS-CBC-CEEEEE
T ss_pred CcccCCCceEEecCCcEEEEEEc-cC-CCcccccccceeeecceEecC---CC-----ceEEEEEeccc-CCe-eEEEEe
Confidence 46789999999999999999999 66 88888 99998876521 12 13789999988 999 999997
Q ss_pred ecCceeeeEeEEEEEEcCCeEE-eCCCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCCCCceE-EeccceEEEc
Q psy574 82 NVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPEDRMS-VLPSRSLQLS 156 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~~~~~~-~~~~~~L~I~ 156 (977)
+..+ ..+..+.|.|..+|.+. ..+.+..+.+|+++.|.|.+.|.|.+ .|.|+|++..+...... ...++.|.|.
T Consensus 69 ~~~~-~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~ 147 (450)
T 1z7z_I 69 CPDG-QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL 147 (450)
T ss_dssp ETTE-EEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEE
T ss_pred CCCC-cceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEE
Confidence 5543 45667889999888766 57777899999999999999988877 99999999887532211 1124589999
Q ss_pred cCccCCCeEEEEEEEeCCee--------EEEEEEEEEeeC----CeEEecCCCcEEeeCCeEEEEEEEecC-C--CCeEE
Q psy574 157 DVRLEDAGEYVCEAENAVGK--------ISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGS-P--PPSTF 221 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~--------~~~~~~L~V~~~----p~~~~~p~~~~v~~G~~v~L~C~~~g~-p--~~~i~ 221 (977)
++..+|+|.|+|.|.|..|. .+....|.|... |.+.. ...+.+|+.++|.|.+.+. | .+.+.
T Consensus 148 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~ 224 (450)
T 1z7z_I 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVH 224 (450)
T ss_dssp CCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEE
T ss_pred eeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEE
Confidence 99999999999999998653 123445556533 33221 2688999999999999998 7 68999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCC--eEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeC
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP--LIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG 299 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G--~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~ 299 (977)
|++++..+.. ++.... ++.......+++.+|+| .|+ |.|.|..|.....+.|.|...+ +|.+...
T Consensus 225 W~~~~~~~~~-------~~~~~~--~~~~~~~~~~v~~~d~G~~~Y~-C~a~n~~g~~~~~~~l~V~~~~---~p~i~~~ 291 (450)
T 1z7z_I 225 LALGDQRLNP-------TVTYGN--DSFSAKASVSVTAEDEGTQRLT-CAVILGNQSQETLQTVTIYSFP---APNVILT 291 (450)
T ss_dssp EEETTEECCC-------EEEEET--TEEEEEEEEECCGGGCEEEEEE-EEEEETTEEEEEEEEEEEECCC---CCEEEES
T ss_pred EeCCCEeCCc-------eEEecC--CceeEEEEEEeEhhhCCcEEEE-EEEccCCccEEEEEEEEEecCC---CCeEecC
Confidence 9999987631 222221 12111112277899999 999 9999999999889999998743 4666543
Q ss_pred CCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCC-c---eEEEEE
Q psy574 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG-S---ASWSAS 375 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G-~---~~~s~~ 375 (977)
...+..|+.+.|.|.+.+.|.+.| +|..+... .....|.|..+...|.|.|+|.|.|..+ . ...++.
T Consensus 292 --~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~ 362 (450)
T 1z7z_I 292 --KPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPL-----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362 (450)
T ss_dssp --CSEEETTCEEEEEEEC-----------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred --CeeEeCCCcEEEEEecCCCCEeEE--CCEEcCCC-----CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEE
Confidence 458899999999999998889999 77766211 1234799999999999999999997665 3 346677
Q ss_pred EEEECCC
Q psy574 376 LRFESPT 382 (977)
Q Consensus 376 l~v~~~~ 382 (977)
|.|..+|
T Consensus 363 l~V~~~P 369 (450)
T 1z7z_I 363 LRVLYGP 369 (450)
T ss_dssp CEEEEEE
T ss_pred EEEecCC
Confidence 7777554
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=326.17 Aligned_cols=353 Identities=15% Similarity=0.216 Sum_probs=245.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCce-EEEecC------cEEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKR-LRLVDG------TNLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~r-~~~~~~------g~L~I~~v~~~D~G~ 75 (977)
.|.+.+.|....+.+|+.++|.|.+ .|.|. +.|.|+|||+.+....... .....+ ..|.|.+++.+|+|.
T Consensus 114 ~P~~~~~~~~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~ 192 (523)
T 2rcj_C 114 NPTVTLFPPSSEELQANKATLVCLI-SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRS 192 (523)
T ss_pred CCeEEecCCcccccCCCceEEEEEe-ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCce
Confidence 4566777777778899999999999 56554 3999999999884321100 001112 369999999999999
Q ss_pred EEEEEEecCceeeeEeEEEE----EEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC---ceE
Q psy574 76 YQCVVKNVAGTRESTDAVLR----VLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED---RMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~----V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~---~~~ 146 (977)
|+|.|.|..+.... .+.+. +..+|.+...+....+.+|+.+.|.|.+.|. |.+ .|.|+|++..+... +..
T Consensus 193 Y~C~a~n~~~~~~~-~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~ 271 (523)
T 2rcj_C 193 YSCQVTHEGSTVEK-TVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL 271 (523)
T ss_pred EEEEEEecCccccc-ceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEe
Confidence 99999998775432 23332 2345666644445567899999999999876 777 89999999875421 111
Q ss_pred -----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEe-cCCCcE-EeeCCeEEEEEEEecCCC--
Q psy574 147 -----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE-RPSDLR-LEVGRDAVFLCGIEGSPP-- 217 (977)
Q Consensus 147 -----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~-~p~~~~-v~~G~~v~L~C~~~g~p~-- 217 (977)
......|.|.++..+| |.|+|.|.|..|.....+.|.|...|.+.. .|.... +.+|+.++|.|.+.|.++
T Consensus 272 ~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~ 350 (523)
T 2rcj_C 272 QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED 350 (523)
T ss_pred cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCC
Confidence 0112479999999999 999999999999877777887776676544 444444 889999999999998654
Q ss_pred --CeEEEEEcCeeeeecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCC
Q psy574 218 --PSTFWMLEGNRSLIYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN 291 (977)
Q Consensus 218 --~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~ 291 (977)
+.|.|+|+|..+.... ........+| .+.|.|.++..+|+|.|+ |.|.|..+.......+.+... ..
T Consensus 351 ~~~~v~W~k~g~~l~~~~-----~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~~~~~~~-~~ 423 (523)
T 2rcj_C 351 PQVKFNWYVDGVQVHNAK-----TKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK-CKVSNKALPAPIEKTISKAKG-QP 423 (523)
T ss_pred CceEEEEEECCeEccCCc-----cCCceecCCCcEEEEEEEEECHHHhcCCCeEE-EEEeCCCCCCceeEEEEcccC-CC
Confidence 4899999998764221 1111111112 137999999999999999 999998887765555553211 12
Q ss_pred CCCeEEe-CCCceeecCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCCC--cEEEecCce------EEEeccCCCCCeE
Q psy574 292 PPPVILF-GPANQTLPLRSEARLRCQVRG--EG--SVQWWRGEREVGSGP--RVNVTGDGS------LVLTDVTKEDSGE 358 (977)
Q Consensus 292 ~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~~--~~~~~~~~s------l~I~~v~~~d~G~ 358 (977)
.+|.+.. .+....+..|+ +.|.|.+.+ ++ .+.|++||..+.... ......+++ |.|......|.|.
T Consensus 424 ~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~ 502 (523)
T 2rcj_C 424 REPQVYTLPPSREEMTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 502 (523)
T ss_pred CCCEEEEeCCChHHccCCc-eEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCe
Confidence 2555443 33333344444 999999998 44 899999999886442 222344554 3344444467999
Q ss_pred EEEEEEcCCC
Q psy574 359 YTCVVKSPHG 368 (977)
Q Consensus 359 Y~C~a~n~~G 368 (977)
|+|.|.|...
T Consensus 503 Y~C~a~n~~l 512 (523)
T 2rcj_C 503 FSCSVMHEAL 512 (523)
T ss_pred EEEEEEcCCc
Confidence 9999999754
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=295.65 Aligned_cols=276 Identities=23% Similarity=0.412 Sum_probs=229.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEe-CCEEeecCCCceEEEe----cCcEEEEcCCCCCCCeEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k-~g~~l~~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C 78 (977)
.+.|.+.|.++.+.+|++++|.|.+ .+.| .+.|.|+| ||..+.. ...|+.+. .++.|.|.+++.+|+|.|+|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~i~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEE-SSCCSCCEEEEECTTSCBCCS-SCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEe-CCCCCCcEeEEECCCCeECcc-CCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence 3678899999999999999999999 5655 79999999 8888843 34455553 23579999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQL 155 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I 155 (977)
.+.|..|...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .++....++.|.|
T Consensus 80 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i 159 (291)
T 1qz1_A 80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159 (291)
T ss_dssp EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence 9999987666778899999999999999999999999999999999999999999999988743 4556667789999
Q ss_pred ccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
.++..+|+|.|+|.|.|..+. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.|.|.+.+.|+++|..+..
T Consensus 160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~ 239 (291)
T 1qz1_A 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239 (291)
T ss_dssp TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence 999999999999999997543 45678888888888876544 44677899999999999999999999999987642
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ...++.... +.+.|.|.++..+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 240 ~~~-~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 240 EEE-DDEKHIFSD---DSSELTIRNVDKNDEAEYV-CIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp C---CCSSEEECT---TSCEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCC-CCcceEEcC---CCcEEEEEecChhcCEEEE-EEEEeCCCceEEEEEEEEEc
Confidence 210 112343332 3358999999999999999 99999999999999998864
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=297.23 Aligned_cols=269 Identities=27% Similarity=0.419 Sum_probs=214.9
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCC-CCCeEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRK-TDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~-~D~G~Y~C 78 (977)
...|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+.. ...++....+ ..|.|.+++. +|+|.|+|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 457889999999999999999999999 7899999999999999843 2222222233 4699999998 99999999
Q ss_pred EEEecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC----ceEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSV 147 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~----~~~~ 147 (977)
.|.|..|. .+..+.|.|..+ |.+...|....+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++..
T Consensus 82 ~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~ 160 (304)
T 2yd9_A 82 VAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ 160 (304)
T ss_dssp EEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred EEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence 99998887 456788999865 77888888889999999999999999999999999999887542 4555
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCeeEEEE-EEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS-ATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
..++.|.|.+++.+|+|.|+|.|.|..|..... +.|.|. .+|.+...+....+.+|+.++|.|.+.|.|.+.+.|+
T Consensus 161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~ 240 (304)
T 2yd9_A 161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240 (304)
T ss_dssp CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence 677899999999999999999999999875532 455553 6788888888888999999999999999999999999
Q ss_pred EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+++..+.... ++ ..+...|.|.++ +|+|.|+ |.|.|..|.....+.|.|..
T Consensus 241 ~~~~~l~~~~-----~~-----~~~~~~L~i~~~--~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 291 (304)
T 2yd9_A 241 QGAEDLTPED-----DM-----PVGRNVLELTDV--KDSANYT-CVAMSSLGVIEAVAQITVKS 291 (304)
T ss_dssp ETTEECSCSS-----SC-----CBSEEEEEECSC--CSCEEEE-EEEEETTEEEEEEEEEC---
T ss_pred ECCEECCCcc-----cc-----cCCcEEEEEccc--ccCEEEE-EEEEeCCCcEEEEEEEEEec
Confidence 9998764221 11 124346777665 6999999 99999999999999999987
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=285.81 Aligned_cols=271 Identities=25% Similarity=0.435 Sum_probs=234.6
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEEccCccCCCeEEEEEEEe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+|.|...|.+..+.+|++++|.|.+.|.|.+.|.|+|++..+..+ ++.+. ....|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 35789999999999999999999999999999999999999988653 33332 347899999999999999999999
Q ss_pred CCeeEEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 173 AVGKISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 173 ~~g~~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
..|..+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++..... .+...
T Consensus 83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~-~~~~~ 156 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-----ESSKFRMSFV-ESVAV 156 (284)
T ss_dssp TTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECC-----CSSSEEEEEE-TTEEE
T ss_pred CCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECc-----CCCcEEEEEc-CCEEE
Confidence 9999999999999999988776554 468899999999999999999999999998764 2234443332 34468
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECC
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGE 329 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g 329 (977)
|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...|....+..|+.+.|.|.+.+ .+.+.|++++
T Consensus 157 L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~ 230 (284)
T 2rik_A 157 LEMYNLSVEDSGDYT-CEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230 (284)
T ss_dssp EEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEC-----CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred EEECCCCcccCEEEE-EEEEcCCCceeEEEEEEEec-----CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence 999999999999999 99999999999999999998 677777888888999999999999998 6789999999
Q ss_pred EEcCCCCcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 330 REVGSGPRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 330 ~~l~~~~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
..+....++.+..+ .+|.|.++...|.|.|+|.|.|..|....++.|.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99988777766554 369999999999999999999999999999988875
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=345.38 Aligned_cols=445 Identities=15% Similarity=0.169 Sum_probs=132.0
Q ss_pred cccceEEeCC--CcEEEEEECCCCCCCCeEEEEeC--CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 11 QPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN--GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 11 ~p~~~~v~~G--~~v~L~C~~~~g~P~~~v~W~k~--g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
.|..+.+.+| +.++|.|.+ .+ |.+.|.|+|+ |..+..+ ..++.......|.|.+++.+|+|.|+|.+.+....
T Consensus 132 ~~~~~~v~~G~~~~v~L~C~~-~~-p~~~v~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 208 (772)
T 3v2a_R 132 QHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPD-GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES 208 (772)
T ss_dssp CEEEEEEESSCCCEEEECCCC-SC-SSCCEEEEEETTTEEECCC-SSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEE
T ss_pred cceeEEEecCCCCeEEEEccC-CC-CCcEEEEEecCCCccccCC-CceeecCCCCCeEecCCChhhCeEEEEEEEECCce
Confidence 3556788999 899999998 44 7789999998 7766333 23344555678999999999999999999987555
Q ss_pred eeeEeEEEEEEcC--CeEEe-CCCceEEeCCCeEEEEEEecc--cCceEEEEEECCeeCCCCceE------------Eec
Q psy574 87 RESTDAVLRVLVK--PYIIR-GPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMS------------VLP 149 (977)
Q Consensus 87 ~~s~~~~l~V~~~--P~~~~-~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~~l~~~~~~------------~~~ 149 (977)
..+..+.+.+... |.+.. .+....+.+|++++|.|.+.+ .+.+.+.|++++..+...... ...
T Consensus 209 ~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (772)
T 3v2a_R 209 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 288 (772)
T ss_dssp EECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEE
T ss_pred EEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEE
Confidence 4555455655533 33333 344578999999999999977 456789999998876442211 113
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC---CCcEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p---~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
...|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+ ....+.+|+.++|.|.+.+.|.+.+.|+++|
T Consensus 289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g 368 (772)
T 3v2a_R 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG 368 (772)
T ss_dssp EEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC---------------------------------------
T ss_pred EEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECC
Confidence 4579999999999999999999999988899999999888766543 4567899999999999999999999999999
Q ss_pred eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE--EEEEEEECCCCCCCCeEEeC---CC
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA--RASLTVSGPDPNPPPVILFG---PA 301 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~--~~~l~V~~~~~~~pp~i~~~---p~ 301 (977)
..+.. ++.+. +...|.|.++..+|+|.|+ |.|.|..|.... .+.|.|.. +|.+... +.
T Consensus 369 ~~l~~-------~~~~~----~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~s~~~~l~v~~-----~P~~~~~~~~~~ 431 (772)
T 3v2a_R 369 IPLES-------NHTIK----AGHVLTIMEVSERDTGNYT-VILTNPISKEKQSHVVSLVVYV-----PPQIGEKSLISP 431 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCC-------CceEc----cceeEEEecCChhcCceEE-EEEEECCcCeEEEEEEEEEEec-----CCcccccccCCC
Confidence 87642 11111 2248999999999999999 999999887643 44566655 4444322 11
Q ss_pred ceeecCCCcEEEEEEEcc--Cce-EEEEECCEE--------------------------------cCC-CCcEEEec---
Q psy574 302 NQTLPLRSEARLRCQVRG--EGS-VQWWRGERE--------------------------------VGS-GPRVNVTG--- 342 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~--~p~-i~W~~~g~~--------------------------------l~~-~~~~~~~~--- 342 (977)
...+..|+.+.|.|.+.+ .|. +.|++++.. +.. ..+.....
T Consensus 432 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 511 (772)
T 3v2a_R 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKN 511 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcc
Confidence 123788999999999999 554 999997432 100 01111111
Q ss_pred --CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEc
Q psy574 343 --DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420 (977)
Q Consensus 343 --~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~ 420 (977)
...|.|..+ .|+|.|+|.|.|..|..+..+.+.|..++.... .+......+....+.|.........+.|..
T Consensus 512 ~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~----~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k 585 (772)
T 3v2a_R 512 KTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITL----QPDMQPTEQESVSLWCTADRSTFENLTWYK 585 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeec----cCCcccccCCceEEEEeccCCCCCCcEEEE
Confidence 135777766 589999999999999988888888876443221 111112233333444443344445677876
Q ss_pred CCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-----eecCcCeEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-----TNVPSPILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 421 p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-----~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
...... ......+....... ....|.... .......+.|.++.......|+|.|.|..|..
T Consensus 586 ~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 651 (772)
T 3v2a_R 586 LGPQPL-PIHVGELPTPVCKN---------LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKK 651 (772)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCccc-ccccCccccccccc---------ccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence 443100 00000000000000 000111110 01112347789999999999999999966543
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=294.07 Aligned_cols=273 Identities=20% Similarity=0.359 Sum_probs=225.6
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C 78 (977)
+..+.|.+.|.++.+.+|+.++|.|.+ .+.|. .|.|+| +|..+.. ..|+.+..++ .|.|.+++.+|+|.|+|
T Consensus 2 ~~~p~v~~~~~~~~v~~G~~v~l~C~~-~~~p~-~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 77 (291)
T 2wim_A 2 MALLQVTISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77 (291)
T ss_dssp -CCCEEEESCSEEEEETTCCEEEEEEE-ESCCS-EEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CCCceEEEeccceEecCCCcEEEEEEE-eCCCC-ceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEE
Confidence 456889999999999999999999999 67774 899999 7777743 3466665544 79999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQL 155 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I 155 (977)
.+.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++.+..++.|.|
T Consensus 78 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i 157 (291)
T 2wim_A 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 157 (291)
T ss_dssp EEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEE
T ss_pred EEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEE
Confidence 999998877677888999999998888888999999999999999999999999999988764 45666677889999
Q ss_pred ccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.|.|.+.+.|+++|..+.
T Consensus 158 ~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~- 236 (291)
T 2wim_A 158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE- 236 (291)
T ss_dssp TTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECC-
T ss_pred EecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECc-
Confidence 999999999999999998743 44667888888888766554 3467899999999999999999999999998763
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
...++.+.. ....|.|.++..+|+|.|+ |.|.|..|....++.|.|..+
T Consensus 237 ----~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 237 ----ENEKYILKG---SNTELTVRNIINSDGGPYV-CRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp ----CTTTEEECS---TTCEEEEESCCSTTCEEEE-EEEEETTEEEEEEEEEEC---
T ss_pred ----CCccEEEcC---CccEEEEeeCCcccCEEEE-EEEEECCCceeeeEEEEEEEe
Confidence 233444332 2348999999999999999 999999999999999999874
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=304.29 Aligned_cols=263 Identities=27% Similarity=0.459 Sum_probs=217.3
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee--eE
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE--ST 90 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~ 90 (977)
..+.+.+|+.++|.|.++.+.|.+.+.|++|+..+. ....++....++.|.|.+++.+|+|.|+|.|.|..+... +.
T Consensus 110 ~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 188 (384)
T 3kld_A 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188 (384)
T ss_dssp CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC-CSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECC
T ss_pred CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE-eeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCC
Confidence 458899999999999876677889999999999884 334455555678999999999999999999999876432 12
Q ss_pred eEEEEEE-------cCCe-EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe-eCCCCceEEeccceEEEccCccC
Q psy574 91 DAVLRVL-------VKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 91 ~~~l~V~-------~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~-~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
...+.+. .+|. ....|....+.+|+++.|.|.+.|.|.|.+.|+|++. .+.........++.|.|.+++.+
T Consensus 189 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~ 268 (384)
T 3kld_A 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQE 268 (384)
T ss_dssp CEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGG
T ss_pred ceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChh
Confidence 2233332 1233 3445777889999999999999999999999999654 55443333335678999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|+|.|+|.|.|..|.....+.|.|..+|.+...+.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+. ...++.
T Consensus 269 D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~-----~~~~~~ 343 (384)
T 3kld_A 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-----TRDRIQ 343 (384)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECC-----CBTTEE
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECC-----CCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998763 344555
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+. ++ .|.|.++..+|+|.|+ |.|.|..|....++.|.|..
T Consensus 344 ~~---~~--~L~i~~v~~~D~G~Y~-C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 344 IE---QG--TLNITIVNLSDAGMYQ-CVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EE---TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred Ee---CC--EEEEeecChhhCEEEE-EEEEeCCceEEeceEEEEec
Confidence 43 34 8999999999999999 99999999999999998863
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=364.12 Aligned_cols=358 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee-eEe
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STD 91 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~ 91 (977)
....+.+|+.++|.|.+ .+.|.+.|.|+|||..+.. +..+..++.|.|.+++.+|+|.|+|.|.|..|... +..
T Consensus 338 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 412 (772)
T 3v2a_R 338 SLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCC----CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEE
Confidence 35779999999999999 7899999999999999843 33333457899999999999999999999877543 556
Q ss_pred EEEEEEcCCeEEeCC---CceEEeCCCeEEEEEEecccCceE-EEEEECCee----------------------------
Q psy574 92 AVLRVLVKPYIIRGP---KDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSA---------------------------- 139 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p---~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~---------------------------- 139 (977)
+.|.|..+|.+.... ....+.+|+.++|.|.+.|.|.+. |.|++++..
T Consensus 413 ~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (772)
T 3v2a_R 413 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQ 492 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcccccccccccc
Confidence 788888888775432 122488999999999999999997 999997322
Q ss_pred ----CCC--CceEEec-----cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEE
Q psy574 140 ----MPE--DRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVF 208 (977)
Q Consensus 140 ----l~~--~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L 208 (977)
+.. .+..+.. ...|.|.++ +|+|.|+|.|.|..|..+..+.|.|..+|.+...|. ..+.+|+.++|
T Consensus 493 ~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l 569 (772)
T 3v2a_R 493 GGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSL 569 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEE
Confidence 110 1111111 146777776 799999999999999988899999998888877665 45789999999
Q ss_pred EEEEecCCCCeEEEEEcCeeeeecCCCccc--------cE------EEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 209 LCGIEGSPPPSTFWMLEGNRSLIYPGDRVD--------NI------QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 209 ~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~--------~~------~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.|.+.+.|.+.+.|++++..+......... .+ .+.....+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 570 ~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~ 648 (772)
T 3v2a_R 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYV-CLAQDRK 648 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEE-EEEEeCC
Confidence 999999999999999998765321100000 00 00011122346999999999999999 9999976
Q ss_pred Ccee--EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEec-CceEEEe
Q psy574 275 GSDL--ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTG-DGSLVLT 349 (977)
Q Consensus 275 g~~~--~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~ 349 (977)
+... ..+.|.|.. ..+|.+...+.+..+..|+.++|.|.+.+ .|.|.|+++|..+....++.+.. .++|.|.
T Consensus 649 ~~~~~s~~~~l~v~~---~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~ 725 (772)
T 3v2a_R 649 TKKRHCVVRQLTVLE---RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 725 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEEeecccc---cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEEC
Confidence 5543 344555542 12677888888888999999999999998 77899999999987766655543 5689999
Q ss_pred ccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 350 ~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
++...|+|.|+|.|.|..|..+.++.|.|.+++
T Consensus 726 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p 758 (772)
T 3v2a_R 726 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758 (772)
T ss_dssp ---------------------------------
T ss_pred cCCHHHCEEEEEEEEeCCcceeEEEEEEEECCC
Confidence 999999999999999999999999999998654
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=302.51 Aligned_cols=271 Identities=30% Similarity=0.499 Sum_probs=235.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec-CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~-~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+.|...+..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ....++....++.|.|.+++.+|+|.|+|.+.|..
T Consensus 122 ~~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 122 LRFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp CEECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred CccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCC
Confidence 456667778899999999999998 7889999999999998843 33456777778899999999999999999999988
Q ss_pred ceeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEeccceEEEc
Q psy574 85 GTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLS 156 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~ 156 (977)
+...+..+.|.|...| .+...+.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++....++.|.|.
T Consensus 201 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~ 280 (403)
T 3laf_A 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLIS 280 (403)
T ss_dssp CCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEEC
T ss_pred CceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEe
Confidence 7766667788888665 355677888899999999999999999999999999998764 44555577899999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+. .
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~-----~ 355 (403)
T 3laf_A 281 NVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-----P 355 (403)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECC-----C
T ss_pred CCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECC-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763 2
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..++.... .+ .|.|.++..+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 356 ~~~~~~~~--~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 356 SDYFQIVG--GS--NLRILGVVKSDEGFYQ-CVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp SSSEEEET--TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEECCC
T ss_pred CCcEEEec--Cc--cEEEeccccccCEEEE-EEEEcCCceEEEEEEEEEeC
Confidence 33344332 23 8999999999999999 99999999999999999886
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=305.03 Aligned_cols=352 Identities=14% Similarity=0.192 Sum_probs=237.2
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEec-----CcEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~-----~g~L~ 64 (977)
..+|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+ |..+. ....+|+.+.. +++|.
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (444)
T 1igt_B 4 LQESGGGLVQPGGSLKLSCAT-SGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ 82 (444)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred EecCCCeEEcCCCCEEEEEEc-CCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence 346778999999999999998 4543 578999985 33211 11235777653 34799
Q ss_pred EcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEEC
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRL 136 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~ 136 (977)
|.+++.+|+|.|+|.+.|..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|+
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 162 (444)
T 1igt_B 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 162 (444)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence 9999999999999999987654 233446788873 4555433333345899999999999875 776 9999999
Q ss_pred CeeCCC---Cc----eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE------------------eeCCeE
Q psy574 137 GSAMPE---DR----MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV------------------QMAPIV 191 (977)
Q Consensus 137 ~~~l~~---~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V------------------~~~p~~ 191 (977)
+..+.. .. ........|.|.++..+| |.|+|.|.|..+.......+.+ ..+|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v 241 (444)
T 1igt_B 163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV 241 (444)
T ss_dssp TBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred CCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence 876421 11 011123579999999999 9999999999887544444432 235665
Q ss_pred EecCCCc-E-EeeCCeEEEEEEEecCC----CCeEEEEEcCeeeeecCCCccccEEEEEcc--CCceEEEEeecccCCCC
Q psy574 192 RERPSDL-R-LEVGRDAVFLCGIEGSP----PPSTFWMLEGNRSLIYPGDRVDNIQAEITS--DGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 192 ~~~p~~~-~-v~~G~~v~L~C~~~g~p----~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~--~g~s~L~I~~v~~~d~G 263 (977)
...+... . +.+|+.++|.|.+.|.+ .+.+.|++++..+.... .......... ...+.|.|.+++.+|.|
T Consensus 242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~G 318 (444)
T 1igt_B 242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ---TQTHREDYNSTLRVVSALPIQHQDWMSGK 318 (444)
T ss_dssp EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT---CBCCEEECSSSEEEEEEEECCHHHHHTTC
T ss_pred EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc---cccceeCCCCcEEEEEEEEEcHHHhccCC
Confidence 3444333 3 58999999999999874 35999999997753211 1111111000 01248999999999999
Q ss_pred eEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C-c-eEEEEECCEEcCCC--C
Q psy574 264 LIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E-G-SVQWWRGEREVGSG--P 336 (977)
Q Consensus 264 ~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~-p-~i~W~~~g~~l~~~--~ 336 (977)
.|+ |.|.|..+.......+.+.. ....+|.+.. .+....+..| .++|.|.+.+ + + .|.|+++|..+... .
T Consensus 319 ~Y~-C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 395 (444)
T 1igt_B 319 EFK-CKVNNKDLPAPIERTISKPK-GSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395 (444)
T ss_dssp EEE-EEEECTTCSSCEEEEEECCC-CCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred cEE-EEEEcCCCCCceEEEEeccC-CCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccc
Confidence 999 99999988774444443211 1123566543 3333334445 4999999988 2 2 89999999988432 1
Q ss_pred cEEEecCce------EEEeccCCCCCeEEEEEEEcCCC
Q psy574 337 RVNVTGDGS------LVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 337 ~~~~~~~~s------l~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
......+++ |.|......|.|.|+|.|.|..-
T Consensus 396 ~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 396 EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred cceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 222234554 44555555579999999999754
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=280.80 Aligned_cols=274 Identities=27% Similarity=0.431 Sum_probs=215.9
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe--cc---ceEEEccCcc-CCCeEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PS---RSLQLSDVRL-EDAGEYVCEA 170 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~--~~---~~L~I~~v~~-~D~G~Y~C~a 170 (977)
..+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+...++.+. .+ ..|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 4689999999999999999999999999999999999999999887776654 22 5799999998 9999999999
Q ss_pred EeCCeeEEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 171 ENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
.|..|..+..+.|.|..+ |.+...|....+.+|+.++|.|.+.|.|.+.+.|++++..+... ....++.
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--~~~~~~~-- 159 (304)
T 2yd9_A 84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS--ASNGRIK-- 159 (304)
T ss_dssp ECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG--GGTTSEE--
T ss_pred ECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC--CCcceEE--
Confidence 999999888999999865 77888888889999999999999999999999999999876421 1122333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--C
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--E 320 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~ 320 (977)
...++ .|.|.+++.+|+|.|+ |.|.|..|..... +.|.|... ..+|.+...|....+..|+.+.|.|.+.+ .
T Consensus 160 ~~~~~--~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~~l~v~~~--~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~ 234 (304)
T 2yd9_A 160 QLRSG--ALQIESSEETDQGKYE-CVATNSAGVRYSSPANLYVRVQ--NVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234 (304)
T ss_dssp ECTTS--CEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEECC--CEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred eCCCe--EEEEccCCcccCEEEE-EEEEeCCCCEEeccEEEEEEee--ccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence 22234 8999999999999999 9999999876543 56666542 12677888888888999999999999998 7
Q ss_pred ceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 321 GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 321 p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
|.+.|+++|..+....++. .....|.|.++ .|+|.|+|.|.|..|....++.|.|.+++
T Consensus 235 p~v~W~~~~~~l~~~~~~~-~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 235 PYVKWMQGAEDLTPEDDMP-VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp CEEEEEETTEECSCSSSCC-BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CEEEEEECCEECCCccccc-CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 7899999999987664432 11223666555 58999999999999999999999987653
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=301.68 Aligned_cols=348 Identities=14% Similarity=0.231 Sum_probs=231.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CE---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |. .+ .....+|+.+..+ .+|.|
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (457)
T 1hzh_H 5 VQSGAEVKKPGASVKVSCQA-SGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 83 (457)
T ss_dssp EECCCEEECTTCCEEECEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred ecCCceEEcCCCCEEEEEEe-cCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence 45677999999999999998 5655 678999984 32 11 0112467776532 37999
Q ss_pred cCCCCCCCeEEEEEEEecCc--------e---eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-
Q psy574 66 QDSRKTDDGRYQCVVKNVAG--------T---RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV- 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g--------~---~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~- 128 (977)
.+++.+|+|.|+|.+.|..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 163 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 163 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCC
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCC
Confidence 99999999999999998765 1 123446788865 5665554444457899999999999876 64
Q ss_pred eEEEEEECCeeCCCCceE--Eec------cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe--------------
Q psy574 129 LTVHWKRLGSAMPEDRMS--VLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ-------------- 186 (977)
Q Consensus 129 ~~i~W~k~~~~l~~~~~~--~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~-------------- 186 (977)
+.|.|+|++..+...... ... ...|.|.++..+| |.|+|.|.|..+.......+.+.
T Consensus 164 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp CEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCC
T ss_pred eEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCc
Confidence 799999999765321111 111 2379999999999 99999999987765544444432
Q ss_pred ---eCCeE-EecCCCcE-EeeCCeEEEEEEEecCCCC----eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe--
Q psy574 187 ---MAPIV-RERPSDLR-LEVGRDAVFLCGIEGSPPP----STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ-- 255 (977)
Q Consensus 187 ---~~p~~-~~~p~~~~-v~~G~~v~L~C~~~g~p~~----~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~-- 255 (977)
.+|.+ ...|.... +.+|+.++|.|.+.|.+++ .|.|+|++..+.. ..........+| .|.+.
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~-----~~~~~~~~~~~g--~~~~~~~ 315 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN-----AKTKPREEQYNS--TYRVVSV 315 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECC-----CEEEEEEECTTS--CEEEEEE
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccc-----cccccceecCCC--cEEEEEE
Confidence 24555 33333333 6789999999999998653 9999999987631 111111112233 33333
Q ss_pred ----ecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--Cc--eEEEE
Q psy574 256 ----NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--EG--SVQWW 326 (977)
Q Consensus 256 ----~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~ 326 (977)
.....|.|.|+ |.|.|..+.......+.+.. ....+|.+.. .+....+..|+ +.|.|.+.+ ++ .|.|+
T Consensus 316 l~i~~~d~~d~G~Y~-C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~ 392 (457)
T 1hzh_H 316 LTVLHQDWLNGKEYK-CKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWE 392 (457)
T ss_dssp ECCCHHHHHHTCCEE-EEEECTTSSSCEEEEECCCC-CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred EEECHHHccCCCcEE-EEEeCCCCCCcceEEEEccc-CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence 33334499999 99998766554444443211 1122555543 34444455566 999999998 33 89999
Q ss_pred ECCEEcCCC--CcEEEecCce------EEEeccCCCCCeEEEEEEEcCCCc
Q psy574 327 RGEREVGSG--PRVNVTGDGS------LVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 327 ~~g~~l~~~--~~~~~~~~~s------l~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
++|..+... .+.....+++ |.|......|.|.|+|.|.|....
T Consensus 393 k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 393 SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp ETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred ECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 999988543 1222234443 444555446799999999997654
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-32 Score=324.06 Aligned_cols=445 Identities=14% Similarity=0.158 Sum_probs=296.2
Q ss_pred ecCCCcEEeeCCeEEEEEEEe-------cCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 193 ERPSDLRLEVGRDAVFLCGIE-------GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~-------g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+.|.+..+..|++++|.|.+. +.+.+.|.|+++|..+.. ..+.+.. +..+.|+|.++...|.+ |
T Consensus 8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~------~~~~~~~--~~~~~l~i~~~~~~~~~-y 78 (589)
T 3l5h_A 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK------EQYTIIN--RTASSVTFTDIASLNIQ-L 78 (589)
T ss_dssp CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCG------GGCBCCS--SSCCBCCCCCCCSSCCC-C
T ss_pred EecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECCh------HHccccC--CcEeEEEEecCCCccee-e
Confidence 467788899999999999997 667789999999865521 1222221 23458999999988765 7
Q ss_pred EEEEEEcCCC--ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe
Q psy574 266 ILCLGVNAAG--SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT 341 (977)
Q Consensus 266 ~~C~a~n~~g--~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~ 341 (977)
+ |.+..... .....+.|.|.. ..+...+|.|.... ...+.|........ ...+.+.
T Consensus 79 ~-C~~~~~~~~~~~~~~~~l~v~~------------------pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~-~~~y~l~ 138 (589)
T 3l5h_A 79 T-CNILTFGQLEQNVYGITIISGL------------------PPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLK 138 (589)
T ss_dssp C-CC-CCTTCC-CCCCCCCCCC-C------------------CCCCCEEEEEEEETTSCEEEEEECCSCCSS-CEEEEEC
T ss_pred E-EecccCCCcccEEEeEEEeccC------------------CCCCCEeeEEEECCCceEEEEECCCCcCCc-CceEEEE
Confidence 7 66543111 112222333322 12345678888877 56788876432110 0111110
Q ss_pred --------------c--CceEEEe-ccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCC
Q psy574 342 --------------G--DGSLVLT-DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404 (977)
Q Consensus 342 --------------~--~~sl~I~-~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~ 404 (977)
. ..++.+. ++.....+.|+|.|.|..|.... ..+.+. ......|.||.++
T Consensus 139 ~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s-~~~~~~------------~~~~~~p~pP~~~ 205 (589)
T 3l5h_A 139 SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFD------------PVYKVKPNPPHNL 205 (589)
T ss_dssp CBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCC-CCEEEC------------GGGSEECCCCCSC
T ss_pred EEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCccc-ccEEEc------------cccEEEcCCCceE
Confidence 0 1235555 56677789999999999997532 122221 1112468999999
Q ss_pred eEE--eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec---eecCcCeEEEEccCCCCeEE
Q psy574 405 TLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA---TNVPSPILTVTNLTVGLTYT 479 (977)
Q Consensus 405 ~v~--~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~p~t~Y~ 479 (977)
.+. ..+.+++.|+|.+|.. .++.+..|.|+|+..... .|.... ......++.+.+|.|++.|.
T Consensus 206 ~~~~~~~~~~~v~l~W~~p~~-~~~~~~~Y~v~~~~~~~~-----------~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 273 (589)
T 3l5h_A 206 SVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAS-----------TWSQIPPEDTASTRSSFTVQDLKPFTEYV 273 (589)
T ss_dssp EEECTTTCTTCEEEECCCCGG-GGTSCEEEEEEEEETTCS-----------CCBCCCTTSSCSCCSEEEECSCCSSCCEE
T ss_pred EEEecCCCCCeEEEEeCCCCC-CCeeeEEEEEEECCCCCC-----------CcEEEccccCcCceeEEEECCCCCCCEEE
Confidence 884 4678899999998876 456789999999987543 576553 23356889999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe-eEeCCC
Q psy574 480 FLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV-KPMTST 558 (977)
Q Consensus 480 ~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~-~~~~~t 558 (977)
|+|+|.|..|.|.+|.++..+.... .+..|. .| +..+..+.+ ...+.+
T Consensus 274 ~~V~a~~~~g~g~~S~~S~~~~~~T--~~~~P~---------~~--------------------p~~~~~v~~~~~~~~~ 322 (589)
T 3l5h_A 274 FRIRCMKEDGKGYWSDWSEEASGIT--YEDRPS---------KA--------------------PSFWYKIDPSHTQGYR 322 (589)
T ss_dssp EEEEEEESSSCSCCCCCCCCBCCCC--CCCCCC---------SC--------------------CCEEEECCSCSSTTSC
T ss_pred EEEEEEeCCCCCccCCCCCcccccc--CccCCC---------CC--------------------CcEEEEeecCcCCCcc
Confidence 9999999999998887777654411 111221 01 111122222 356789
Q ss_pred eEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEE
Q psy574 559 SVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634 (977)
Q Consensus 559 sv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~ 634 (977)
+|.|+|+++ .++.+.+|+|+|+..+. .+.. .....+.+++ |.+++.|.|+|+|.|..|.|+.+.. .+
T Consensus 323 ~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~--~~~~----~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~-~~ 393 (589)
T 3l5h_A 323 TVQLVWKTLPPFEANGKILDYEVTLTRWKS--HLQN----YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVL-TI 393 (589)
T ss_dssp CEEEEECCCCTTTSSSCCCEEEEEECCTTS--CCCB----CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCC-CC
T ss_pred eEEEEEeeCCchhccCceeeEEEEEecCCC--Ccee----eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEE-Ee
Confidence 999999974 57789999999987663 2221 1123344554 8999999999999999999988864 34
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc---eEEEEecC-CcCeEEecCCCCCc
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA---LINMTVSA-STPTLLLTNLSAGI 710 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~---~~~~~~~~-~~~~~~l~~L~p~t 710 (977)
.+....|+.||.++.+... ++++.|+|++|. . .+.+|.|+|+..+... .....+.. ....+++.+|+|++
T Consensus 394 ~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~--~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t 467 (589)
T 3l5h_A 394 PACDFQATHPVMDLKAFPK-DNMLWVEWTTPR--E---SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESK 467 (589)
T ss_dssp CCTTCCCCSCCCSCEEEEC-SSSEEEECCCCS--S---CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSS
T ss_pred ecccccCCCCcceEEEEEC-CCeEEEEEECCC--C---CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCc
Confidence 4443345557778887765 689999999984 2 6889999998854211 11122233 34456679999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
.|.|+|+|+|..|.|..+. +.+.|...
T Consensus 468 ~Y~~~V~A~~~~g~g~~~~-~~~~t~~~ 494 (589)
T 3l5h_A 468 CYLITVTPVYADGPGSPES-IKAYLKQA 494 (589)
T ss_dssp EEEEEECBEETTEECCCEE-EEEESSCC
T ss_pred EEEEEEEEEeCCcccCCEE-EEEEeccC
Confidence 9999999999999998764 55555443
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=277.16 Aligned_cols=288 Identities=24% Similarity=0.373 Sum_probs=238.0
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++.+....++.+.|.|.+++.+|+|.|+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 78 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA----DGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCC----CSSSEEEEEETTTEEEEEESSCCGGGCSEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEccc----CCCeEEEEECCCCEEEEEEccCChhhCeEEE
Confidence 478888899999999999999999999999999999999987642 2345665554456679999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe---
Q psy574 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT--- 341 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~--- 341 (977)
|.|.|..|.....+.|.|...+....|.....+....+..|+.+.|.|.+.+ .+.+.|++++..+....++.+.
T Consensus 79 -C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~ 157 (305)
T 2nzi_A 79 -VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157 (305)
T ss_dssp -EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECS
T ss_pred -EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcC
Confidence 9999999988888899987622111122222345677889999999999999 7789999999988777666554
Q ss_pred cCceEEEec-cCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEc
Q psy574 342 GDGSLVLTD-VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420 (977)
Q Consensus 342 ~~~sl~I~~-v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~ 420 (977)
..++|.|.+ +...|.|.|+|.|.|..|....++.|.|. ..|.+|.++.+.....+++.|+|.+
T Consensus 158 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~----------------~~P~~p~~~~~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA----------------DVPDPPRGVKVSDVSRDSVNLTWTE 221 (305)
T ss_dssp SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE----------------BCCCCCEEEEEESCCSSCEEEEEEC
T ss_pred CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe----------------cCCCCCCCceeeeccCCEEEEEEcC
Confidence 335799999 99999999999999999999999999987 3478888888888899999999999
Q ss_pred CCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceE
Q psy574 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500 (977)
Q Consensus 421 p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~ 500 (977)
|...++..+..|.|+++..... .|...... ....+.|.+|.+++.|.|+|+|.|..|.+.+|..+..+
T Consensus 222 p~~~g~~~i~~y~v~~~~~~~~-----------~w~~~~~~-~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~ 289 (305)
T 2nzi_A 222 PASDGGSKITNYIVEKCATTAE-----------RWLRVGQA-RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPT 289 (305)
T ss_dssp CSCCSBSCEEEEEEEEEETTSC-----------CEEEEEEE-SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCE
T ss_pred CccCCCCceeEEEEEEecCCCC-----------ccEECccc-cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCE
Confidence 8776778899999999876543 79877643 37789999999999999999999999999999999888
Q ss_pred Eeecccc
Q psy574 501 VLRGTFS 507 (977)
Q Consensus 501 ~~~~~~p 507 (977)
+++...|
T Consensus 290 ~t~~~~p 296 (305)
T 2nzi_A 290 ITKEDKT 296 (305)
T ss_dssp ECCC---
T ss_pred EcCCccc
Confidence 8744333
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=291.03 Aligned_cols=262 Identities=24% Similarity=0.416 Sum_probs=219.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCcee---
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTR--- 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~--- 87 (977)
+..+.+.+|++++|.|.+..+.|.+.|.|+|++..+....+.+..+. .++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 187 (382)
T 1cs6_A 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187 (382)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence 55688999999999998756788999999999987644444454444 45789999999999999999999876422
Q ss_pred -eeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 88 -ESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 88 -~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.+..+.|.|.. +|.+.. .|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... .......|.|.+++
T Consensus 188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~L~i~~~~ 265 (382)
T 1cs6_A 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVD 265 (382)
T ss_dssp EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCC
T ss_pred eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE--EecCCcEEEEccCC
Confidence 23345566542 455554 466788999999999999999999999999998877541 12256789999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|+++|..+. ...+
T Consensus 266 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-----~~~~ 340 (382)
T 1cs6_A 266 FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-----SQNR 340 (382)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECC-----CCSS
T ss_pred hhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECC-----CCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764 2345
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
+.+. ++ .|.|.++..+|+|.|+ |.|.|..|....++.|.|.
T Consensus 341 ~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 341 IEVS---GG--ELRFSKLVLEDSGMYQ-CVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEEE---TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEE
T ss_pred EEEE---CC--EEEECcCCcccCEEEE-EEEEeCCCeEEEEEEEEEe
Confidence 5543 24 8999999999999999 9999999999999999886
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=288.46 Aligned_cols=349 Identities=17% Similarity=0.259 Sum_probs=235.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE---ee------------cCCCceEEEecC-----cEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP---ID------------FENSKRLRLVDG-----TNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~---l~------------~~~~~r~~~~~~-----g~L 63 (977)
..++|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+ |+. +. ....+|+.+..+ .+|
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM 82 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEe-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEE
Confidence 3567888999999999999998 5543 678999995 221 10 112457776532 479
Q ss_pred EEcCCCCCCCeEEEEEEEecCce-----eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-e-EE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT-----RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV-L-TV 131 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~-----~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~-~i 131 (977)
.|.+++.+|+|.|+|.+.+..|. .....+.|.|.. +|.+...+.. .+.+|+.++|.|.+.|. |. + .|
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P~~p~~v 161 (475)
T 1iga_A 83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFPQEPLSV 161 (475)
T ss_pred EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecCCCceEE
Confidence 99999999999999999987652 123445777763 4555544322 23789999999999886 65 4 99
Q ss_pred EEEECCeeCCCCc---------eEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe---------------
Q psy574 132 HWKRLGSAMPEDR---------MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ--------------- 186 (977)
Q Consensus 132 ~W~k~~~~l~~~~---------~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~--------------- 186 (977)
.|++++....... ........|.|..+..+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~ 241 (475)
T 1iga_A 162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241 (475)
T ss_pred EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence 9999875322100 01111236889899999999999999998764 2333443331
Q ss_pred ---eCCeE-EecCCCcEEeeCCeEEEEEEEecCCC---CeEEEEEcCeeeeecCCC-----ccccEEEEEccCCceEEEE
Q psy574 187 ---MAPIV-RERPSDLRLEVGRDAVFLCGIEGSPP---PSTFWMLEGNRSLIYPGD-----RVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 187 ---~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~---~~i~W~~~g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I 254 (977)
.+|.+ ...|....+.+|+.++|.|.+.|.++ +.|.| ++..+...... ..+.+. ..+.|.|
T Consensus 242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~------~~~~L~I 313 (475)
T 1iga_A 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS------VSSVLPG 313 (475)
T ss_pred CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEE------EEEEEEE
Confidence 24554 33344445689999999999998754 58999 44433211000 011111 1248999
Q ss_pred eecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C--ceEEEEECC
Q psy574 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E--GSVQWWRGE 329 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~--p~i~W~~~g 329 (977)
.+++.+|.|.|+ |.|.|..+.......|.+.. ...+|.+.. .+....+..|+.+.|.|.+.+ + +.|.|+++|
T Consensus 314 ~~~~~~d~G~Y~-C~a~n~~~~~~~~~~v~~~~--~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g 390 (475)
T 1iga_A 314 CAEPWNHGKTFT-CTAAYPESKTPLTATLSKSG--NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGS 390 (475)
T ss_pred chHHhccCCcEE-EEEEcCCCCCceEEEeecCC--CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECC
Confidence 999999999999 99999998865555554321 122555543 444445778999999999998 2 389999999
Q ss_pred EEcCCCCcE----EEe---cCc------eEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 330 REVGSGPRV----NVT---GDG------SLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 330 ~~l~~~~~~----~~~---~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
..+...... ... .++ .|.|......|.|.|+|.|.|....
T Consensus 391 ~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 391 QELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred EECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 988654211 112 233 3556666667899999999997654
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=286.35 Aligned_cols=272 Identities=21% Similarity=0.275 Sum_probs=213.7
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.|. .|.++.+.+|++++|.|.+ .+. |.+.|.|+|||..+... .++.+.. ++.|.|.+++.+|+|.|+|.+.|
T Consensus 7 ~P~~~-~~~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 82 (317)
T 2y25_A 7 GPHFV-EYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD 82 (317)
T ss_dssp CCEEE-EEEEEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECCS--CC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred CCcEe-eeeeEEECCCCeEEEEEEE-cCCCCCCEEEEEECCeEcCCC--CcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence 45665 5667999999999999998 454 88999999999999533 3444443 35899999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc----------cCceEEEEEECCeeCCC-CceEEecc-
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG----------DAVLTVHWKRLGSAMPE-DRMSVLPS- 150 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g----------~p~~~i~W~k~~~~l~~-~~~~~~~~- 150 (977)
..|... ..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. .++.+...
T Consensus 83 ~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 161 (317)
T 2y25_A 83 DRGKDK-SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161 (317)
T ss_dssp SSCEEE-EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred CCCcEE-EEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence 888643 445666665555554455556677888888887766 78999999999998865 34444322
Q ss_pred --ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee--------------------CCeEEe-cCCCcEEeeCCeEE
Q psy574 151 --RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM--------------------APIVRE-RPSDLRLEVGRDAV 207 (977)
Q Consensus 151 --~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~--------------------~p~~~~-~p~~~~v~~G~~v~ 207 (977)
..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+.. .|....+.+|+.++
T Consensus 162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 241 (317)
T 2y25_A 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241 (317)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEE
Confidence 3599999999999999999999999888888887642 344444 35567899999999
Q ss_pred EEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 208 L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|.+.|.|.+.+.|+++|..+. ...++.+....++.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 242 l~C~~~g~p~p~i~W~~~g~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 242 LTCNVWGDPPPEVSWLKNEKALA-----SDDHCNLKFEAGRTAYFTINGVSTADSGKYG-LVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEEEECSSCCEEEEEESSSEEC-----CCSSEEECCBTTTEEEEEEBSCCSTTCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEecCCCCEEEEEECCEeCC-----CCCcEEEEEcCCCEEEEEECCCCHHHCEEEE-EEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999998773 3345555543344579999999999999999 99999999999999999886
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=291.21 Aligned_cols=268 Identities=24% Similarity=0.442 Sum_probs=221.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCC-CeEEEEEEEecCceee-
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD-DGRYQCVVKNVAGTRE- 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D-~G~Y~C~a~n~~g~~~- 88 (977)
.+..+.+.+|+.++|.|.+..+.|.+.+.|+|++... .....++.+..++.|.|.+++.+| +|.|+|.+.|..+...
T Consensus 122 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~ 200 (404)
T 3p3y_A 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200 (404)
T ss_dssp CCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCB-CCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEE
T ss_pred CCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccc-cCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEecccccee
Confidence 3455889999999999998788999999999988655 334567888888999999999999 5999999999876533
Q ss_pred -eEeEEEEEEc-------CCeEEeCC---CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEc
Q psy574 89 -STDAVLRVLV-------KPYIIRGP---KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLS 156 (977)
Q Consensus 89 -s~~~~l~V~~-------~P~~~~~p---~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~ 156 (977)
+..+.|.|.. +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++..+........ .++.|.|.
T Consensus 201 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~ 280 (404)
T 3p3y_A 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280 (404)
T ss_dssp ECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEES
T ss_pred ccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEc
Confidence 2334566653 23333322 345789999999999999999999999999999876654443 46789999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+.... .
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~--~ 358 (404)
T 3p3y_A 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP--P 358 (404)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSC--C
T ss_pred cCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764321 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..+.... ++ .|.|.++..+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 359 ~~~~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 359 NPNREVA---GD--TIIFRDTQISSRAVYQ-CNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CTTEEEE---TT--EEEESSCCSSCCCEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred CceEEec---CC--EEEEeecCHHHCEEEE-EEEEeCCCcEEEEEEEEEEe
Confidence 2223222 24 8999999999999999 99999999999999988864
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-28 Score=270.57 Aligned_cols=305 Identities=18% Similarity=0.217 Sum_probs=238.5
Q ss_pred ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 344 ~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
.++.|.++.+...+.|++.|.|..|.+.... ..+. ..+.+|.++.+...+.+++.|+|.++..
T Consensus 58 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~----------------~~~~~p~~l~~~~~~~~si~l~W~~p~~ 120 (368)
T 1fnf_A 58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTII----------------PAVPPPTDLRFTNIGPDTMRVTWAPPPS 120 (368)
T ss_dssp CEEECCCCCTTSCEEEEEEEEETTEECCCEE-EEEC----------------CCCCCCEEEEEESCCSSCEEEEEECCTT
T ss_pred CEEEECCCCCCCEEEEEEEEEcCCCccCcee-eeec----------------CCCcCCceeEEEEcCCCeEEEEeeCCCC
Confidence 4688999999999999999999988654332 2221 1134788899988899999999999853
Q ss_pred CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEee
Q psy574 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503 (977)
Q Consensus 424 ~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~ 503 (977)
+.+.+|.|+++...... .|..........++.+.+|.|++.|.|+|+|.|..|.+.+.. ...
T Consensus 121 ---~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~----~~~- 182 (368)
T 1fnf_A 121 ---IDLTNFLVRYSPVKNEE----------DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQ- 182 (368)
T ss_dssp ---CCCSEEEEEEEETTCTT----------CCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEE-
T ss_pred ---CCCcEEEEEEEECCCCC----------ccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE----eee-
Confidence 57899999998765443 566665566778999999999999999999999988765421 111
Q ss_pred ccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecC
Q psy574 504 GTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLD 583 (977)
Q Consensus 504 ~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~ 583 (977)
..+ +.++.++.+...+.++|.|+|++|. +.+.+|+|+|+..+
T Consensus 183 -~~~------------------------------------~~~P~~l~~~~~~~~sv~l~W~~p~-~~i~~Y~v~~~~~~ 224 (368)
T 1fnf_A 183 -KTG------------------------------------LDSPTGIDFSDITANSFTVHWIAPR-ATITGYRIRHHPEH 224 (368)
T ss_dssp -ECC------------------------------------CCCCEEEEEESCCSSEEEEEEECCS-SCCSEEEEEEECSC
T ss_pred -cCC------------------------------------CCCCCccEEEEccCCEEEEEEeCCC-CCcCEEEEEEecCC
Confidence 111 1123678888999999999999985 56899999999887
Q ss_pred CCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEee
Q psy574 584 PPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663 (977)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~ 663 (977)
....+....+ .....++.|.+|.|++.|.|+|+|.|..|.|..+. ....+ .| .+|.++++...+.++|.|+|+
T Consensus 225 ~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~~t---~p-~~P~~l~~~~~~~~sv~l~W~ 297 (368)
T 1fnf_A 225 FSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQST---VS-DVPRDLEVVAATPTSLLISWD 297 (368)
T ss_dssp CSSCCEEEEE--ETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CC-CSCEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEe--CCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccccC---CC-CCCCeeEEEecCCCEEEEEee
Confidence 5445544433 25778999999999999999999999999987654 22333 33 477899999889999999999
Q ss_pred CCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCC-ceEE
Q psy574 664 PPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR-PALL 733 (977)
Q Consensus 664 ~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~-~~~~ 733 (977)
+|. . .|.+|.|+|+..+ ........+.++.+++++.+|+|++.|.|+|+|+|.+|.|++|. ++.+
T Consensus 298 ~p~--~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~~i 364 (368)
T 1fnf_A 298 APA--V---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISI 364 (368)
T ss_dssp CCS--S---CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCCEEE
T ss_pred CCC--C---ccceEEEEEEECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCceeee
Confidence 984 2 4889999999865 33445566778899999999999999999999999999999886 5544
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=273.98 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=212.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|.|...+.++.+.+|++++|.|.+ .+ .|.|+|+|..+ +.....++.|.|.+++.+|+|.|+|.|.|
T Consensus 12 ~P~i~~~~~~~~v~~G~~v~l~C~~-~~----~i~W~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-- 78 (290)
T 2o26_X 12 PPSIHPAQSELIVEAGDTLSLTCID-PD----FVRWTFKTYFN------EMVENKKNEWIQEKAEATRTGTYTCSNSN-- 78 (290)
T ss_dssp CCEESSCSSEEEEETTSCEEEEEEC-TT----EEEEEEECSSS------CEEEECSSEEEETTCCGGGCEEEEEEESS--
T ss_pred CCEEeCCCCeEEEcCCCcEEEEECC-CC----cEEEecCCcce------eeecCCCceEEEeccCHHhCeEEEEEeeC--
Confidence 4677778888999999999999998 44 89999999877 22333458899999999999999999998
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEE-ECCeeCCCC-ceEEeccceEEEccCccC
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWK-RLGSAMPED-RMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~-k~~~~l~~~-~~~~~~~~~L~I~~v~~~ 161 (977)
|. +..+.|.|..+|.+...+.+..+.+|+.+.|.|.+.+ |. +.+.|+ +++..+..+ ++....++.|.|.+++.+
T Consensus 79 g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~ 155 (290)
T 2o26_X 79 GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA 155 (290)
T ss_dssp SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGG
T ss_pred Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHH
Confidence 43 5678899998887777778889999999999999985 77 999995 677777653 444556789999999999
Q ss_pred CCe-EEEEEEEeCCeeE-EEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCC
Q psy574 162 DAG-EYVCEAENAVGKI-SASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPG 234 (977)
Q Consensus 162 D~G-~Y~C~a~n~~g~~-~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~ 234 (977)
|+| .|+|.|.|..+.. +..+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+....
T Consensus 156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~- 234 (290)
T 2o26_X 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA- 234 (290)
T ss_dssp GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECC-
T ss_pred HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccce-
Confidence 999 9999999986653 345788887 788888888888999999999999999999996 99999998731000
Q ss_pred CccccEEEEE--ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 235 DRVDNIQAEI--TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 235 ~~~~~~~~~~--~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.......... .....+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFM-CYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp CEECCEEEEETTEEEEEEEEEESSCCSSSCEEEE-EEEECSSCEEEEEEEECC--
T ss_pred eecccccccCceeeEEEEEEEEcCCCcccCeEEE-EEEeCCCCcEEEEEEEEEEe
Confidence 0111111110 0012349999999999999999 99999999998888888876
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=270.35 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=215.0
Q ss_pred CCCCCCCCCeEEe-----eCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEE
Q psy574 396 TYPGPPTKPTLVN-----QTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469 (977)
Q Consensus 396 ~~p~~P~~~~v~~-----~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i 469 (977)
..|++|.++.... .+.+++.|+|.++.. .+++.+.+|.|+|+..... .+ .. ......+
T Consensus 2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~-----------~~-~~----~~~~~~~ 65 (290)
T 3l5i_A 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-----------LQ-NY----TVNATKL 65 (290)
T ss_dssp CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSC-----------CE-EE----EESSSEE
T ss_pred CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcC-----------ce-eE----ecCCcEE
Confidence 3477777775432 235789999998542 3678899999999876543 11 11 1233467
Q ss_pred EccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEE
Q psy574 470 TNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIEL 549 (977)
Q Consensus 470 ~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~ 549 (977)
.+|.|++.|.|+|+|.|..|.|.++ .+.+..... + ++.++.+
T Consensus 66 ~~l~p~t~Y~~~V~A~n~~G~s~~s----~~~~~~~~~--------------~--------------------~~~p~~~ 107 (290)
T 3l5i_A 66 TVNLTNDRYLATLTVRNLVGKSDAA----VLTIPACDF--------------Q--------------------ATHPVMD 107 (290)
T ss_dssp EEEECSSCEEEEEEEEESSCBCCCE----EEEECCTTC--------------C--------------------CCCCCEE
T ss_pred EEEcCCceEEEEEEEEcCCCCCCCc----eEEeecccc--------------c--------------------CCCccce
Confidence 8999999999999999999988665 222311100 0 1223467
Q ss_pred EEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCC----CceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 550 TEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPA----SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+++...+ ++|.|+|++|.. .+.+|.|+|+..+... .|... .......+.+.+|+|++.|.|+|+|+|..|.
T Consensus 108 ~~~~~~~-~si~l~W~~p~~-~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~ 182 (290)
T 3l5i_A 108 LKAFPKD-NMLWVEWTTPRE-SVKKYILEWCVLSDKAPCITDWQQE---DGTVHRTYLRGNLAESKCYLITVTPVYADGP 182 (290)
T ss_dssp EEEEEET-TEEEEEEECCSS-CCCEEEEEEEEECSSSCCCCEEEEE---ETTCSEEECCSCCCTTCEEEEEEEEEETTEE
T ss_pred eEEEeCC-CeEEEEEeCCCC-CCCcEEEEEEECCCCCCCCcCeEEc---cCCCcceEEecCcCCccEEEEEEEEEeCCcc
Confidence 7777775 699999999955 7999999999887532 24333 2355677889999999999999999999999
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecC
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 705 (977)
|. +..+.++|.+.+|..+| ++.+...+.++|.|+|++|+....+|.|.+|.|+|+..+.. .....+.++.++++|.+
T Consensus 183 g~-~~~~~~~t~~~~P~~~p-~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 259 (290)
T 3l5i_A 183 GS-PESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETAVNVDSSHTEYTLSS 259 (290)
T ss_dssp CC-CEEEEEESSCCCCSSCC-CEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSC-CEEEEEETTCSEEEECS
T ss_pred cc-cEEEEeEccccCCCCCC-eeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCC-eEEEEeCCCceEEEeCC
Confidence 97 56677889999998777 67778888999999999776678899999999999986433 34556688899999999
Q ss_pred CCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 706 L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
|+|++.|.|+|+|+|.+| |++|..+.|+|.
T Consensus 260 L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T~ 289 (290)
T 3l5i_A 260 LTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 289 (290)
T ss_dssp CCTTCEEEEEEEEEETTE-EEECCCEEEECC
T ss_pred CCCCCEEEEEEEEEeCCC-CCCCCceEeecC
Confidence 999999999999999999 999999999885
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-28 Score=271.63 Aligned_cols=304 Identities=19% Similarity=0.216 Sum_probs=241.5
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
..++.|.++.+...+.|++.|.|..|.+...... ... ..| +|.++.+...+.+++.|+|.++.
T Consensus 58 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~-~~~---------------~~p-~p~~l~~~~~~~~si~l~W~~~~ 120 (375)
T 3t1w_A 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-IIP---------------EVP-QLTDLSFVDITDSSIGLRWTPLN 120 (375)
T ss_dssp CCEEEECCCCTTCCEEEEEEEEETTEECCCEEEE-ECC---------------CCC-CCSCCEEECCCSSEEEEECCCCC
T ss_pred ccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEee-EcC---------------CCC-CCceEEEEecCCCeEEEEEECCC
Confidence 4568999999999999999999987765433222 110 234 48899999999999999999875
Q ss_pred CCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 423 QIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 423 ~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
++.+.+|.|+++..+... .+..........++.+.+|.|++.|.|+|+|.|..|.|.++.. ...+
T Consensus 121 ---~~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~--~~~t 185 (375)
T 3t1w_A 121 ---SSTIIGYRITVVAAGEGI----------PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL--TQQT 185 (375)
T ss_dssp ---CTTEEEEEEEEEESSSCC----------SCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE--EEEC
T ss_pred ---CCCceEEEEEEEECCCCC----------ceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee--eeec
Confidence 357899999998765432 4444445667789999999999999999999999998876542 1111
Q ss_pred eccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEec
Q psy574 503 RGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGL 582 (977)
Q Consensus 503 ~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~ 582 (977)
.+ .++.++++...+.+++.|+|++|.++.+.+|.|+|+..
T Consensus 186 ---~~-------------------------------------~~p~~l~~~~~~~~si~l~W~~p~~~~i~~Y~v~~~~~ 225 (375)
T 3t1w_A 186 ---AV-------------------------------------PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV 225 (375)
T ss_dssp ---CC-------------------------------------CCCEEEEEESCCSSCEEEEEECCSSCCCCEEEEEEEEG
T ss_pred ---CC-------------------------------------CCCceeEEEecccCEEEEEEcCCCCCCccEEEEEEEeC
Confidence 11 12367888889999999999999778899999999988
Q ss_pred CCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEe
Q psy574 583 DPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKW 662 (977)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W 662 (977)
+....|....+. ....++.|.+|.|++.|.|+|+|.|..|.|.++. ..+.|. | .+|.++++...+.+++.|+|
T Consensus 226 ~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t~---p-~~P~~l~~~~~~~~sv~l~W 298 (375)
T 3t1w_A 226 KNEEDVAELSIS--PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKTG---L-DSPTGIDFSDITANSFTVHW 298 (375)
T ss_dssp GGTTCCEEEEEC--TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECC---C-CCCEEEEEESCCSSCEEEEE
T ss_pred CCCCCcEEEEcC--CCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEecC---C-CCCCccEeeeccCCEEEEEE
Confidence 755556554443 5678999999999999999999999999986654 444553 3 37789999888899999999
Q ss_pred eCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCc
Q psy574 663 KPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730 (977)
Q Consensus 663 ~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~ 730 (977)
++| .|.+.+|.|+|+..+. .......+..+.++++|.+|+|++.|.|+|+|+|.+|.|++..-
T Consensus 299 ~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s~ 362 (375)
T 3t1w_A 299 IAP-----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG 362 (375)
T ss_dssp ECC-----SSCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred CCC-----CcceeeEEEEEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCceee
Confidence 998 2789999999998653 55666777888999999999999999999999999999986653
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=267.15 Aligned_cols=269 Identities=23% Similarity=0.428 Sum_probs=219.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE-CCeeCCC--CceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR-LGSAMPE--DRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k-~~~~l~~--~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
++.+...|.+..+.+|+++.|.|.+.+.| .+.|.|+| ++..+.. .++.+. ....|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 46777888899999999999999998876 68999999 7776653 344443 3468999999999999999999
Q ss_pred EeCCe-eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 171 ENAVG-KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 171 ~n~~g-~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
.|..| ..+..+.|.|..+|.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++.... ++
T Consensus 82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~- 155 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLS--NN- 155 (291)
T ss_dssp ECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTT---CCTTEEECT--TS-
T ss_pred EcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccC---CCceEEEcc--CC-
Confidence 99885 467888999999999999999999999999999999999999999999999876421 223333322 34
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCce--eEEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEEcc--CceE
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSD--LARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSV 323 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~--~~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~~~--~p~i 323 (977)
.|.|.++..+|+|.|+ |.|.|..+.. ...+.|.|.. +|.+...+. ...+..|+.+.|.|.+.+ .|.+
T Consensus 156 -~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~~~l~v~~-----~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i 228 (291)
T 1qz1_A 156 -YLQIRGIKKTDEGTYR-CEGRILARGEINFKDIQVIVNV-----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228 (291)
T ss_dssp -CEEETTCCGGGCEEEE-EEEEEGGGTEEEEEEEEEEEEE-----EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred -cEEEccCccccCeEEE-EEEEecCCCceeeEEEEEEEec-----CCcccccccccccccccCceEEEEEEEEEeCCCcE
Confidence 8999999999999999 9999976543 3445666665 566655443 456789999999999998 6789
Q ss_pred EEEECCEEcCCCC----cEEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 324 QWWRGEREVGSGP----RVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 324 ~W~~~g~~l~~~~----~~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.|+++|..+.... ++..... ..|.|.++...|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 229 ~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 9999999987653 5555444 4699999999999999999999999999999998863
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=282.60 Aligned_cols=331 Identities=15% Similarity=0.160 Sum_probs=197.8
Q ss_pred CCCCeEEEEEEEecCceeeeEeEE------------EEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEE
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAV------------LRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWK 134 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~------------l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~ 134 (977)
..|.|.|.|+..+..+...+.... |..... +.++..|.++.+.+|+++.|.|.+.|.|.+.|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~ 83 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV 83 (423)
T ss_dssp ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence 468899999998765433222111 222221 24455566889999999999999999999999999
Q ss_pred ECCeeCCCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE
Q psy574 135 RLGSAMPEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211 (977)
Q Consensus 135 k~~~~l~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~ 211 (977)
+++..++....... ...+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+.. .....+..|+.+.|.|.
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~ 162 (423)
T 3qs7_E 84 FKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCI 162 (423)
T ss_dssp ETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEE
T ss_pred ECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccc-cCCcEeccCCceEEEEE
Confidence 99987654221111 123699999999999999999999999988899999987665421 12234566888999999
Q ss_pred EecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECCCC
Q psy574 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDP 290 (977)
Q Consensus 212 ~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~~~ 290 (977)
+.|.|.|.|.|++++..+..... .....+... . ..+ ...|+|.|+ |.|.|..|..... +.|.|...
T Consensus 163 a~G~P~P~i~W~k~~~~~~~~~~--~~~~~~~~~--~-~~l-----~~~d~G~Y~-C~A~N~~G~~~~~~~~l~V~~~-- 229 (423)
T 3qs7_E 163 SESVPEPIVEWVLCDSQGESCKE--ESPAVVKKE--E-KVL-----HELFGTDIR-CCARNELGRECTRLFTIDLNQT-- 229 (423)
T ss_dssp EEESSCCEEEEEEC---------------CEEEC--C-SEE-----CCCCSSCEE-EEEECSSCEEEEECEEEESSSC--
T ss_pred EeeecCCeEEEEECCCCCccccc--ccccccccc--c-eEE-----ecccCeEEE-EEEEcCCCCcceeeEEEEEecC--
Confidence 99999999999998875421100 000001110 0 011 578999999 9999999976542 45555542
Q ss_pred CCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEE---------EecCceEEEeccCCCCCeE
Q psy574 291 NPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVN---------VTGDGSLVLTDVTKEDSGE 358 (977)
Q Consensus 291 ~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~---------~~~~~sl~I~~v~~~d~G~ 358 (977)
|.+ .+.+..+..|+.+.|.|.+.+ .|.|.|+++|..+.....+. ....++|.|.++...|+|.
T Consensus 230 ---p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 304 (423)
T 3qs7_E 230 ---PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304 (423)
T ss_dssp ---CCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEE
T ss_pred ---Ccc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEE
Confidence 221 344677899999999999998 36899999998775432211 1223479999999999999
Q ss_pred EEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 359 Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
|+|.|.|. .+.++.|.|..++...+... ........+....+.+.........+.|..+..
T Consensus 305 Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~-~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~ 365 (423)
T 3qs7_E 305 YTCSSSKH---PSQSALVTIVEKGFINATNS-SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365 (423)
T ss_dssp EEEEETTE---EEEEEEEEEESSCEEEEC----CEECCCTTCCCCEEEEEEEESCCEEEEEETTE
T ss_pred EEEEEecC---CCceEEEEEEeCCcceEcCC-CccEEecCCCeEEEEEEEEEcCCCeEEEEECCE
Confidence 99999998 77788888886543211000 011122334445555555555556788876543
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=283.42 Aligned_cols=262 Identities=23% Similarity=0.377 Sum_probs=214.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEeecC---CCceEEEecCcEEEEcCCCCCCC-eEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQDSRKTDD-GRYQ 77 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~~~---~~~r~~~~~~g~L~I~~v~~~D~-G~Y~ 77 (977)
.+.|...+....+.+|+.++|.|.+ .+.| .+.|.|+|++..+... ...|+.+..+++|.|.+++.+|+ |.|+
T Consensus 103 ~p~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~ 181 (388)
T 2v5m_A 103 AQYYEADVNKEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181 (388)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBC-CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEE
T ss_pred ccccccCccceeeecCCcEEEEEEC-cCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEE
Confidence 4566777788899999999999998 4443 3789999999877432 24678888889999999999999 9999
Q ss_pred EEEEecCceeee---EeEEEEEEcC-----CeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-------
Q psy574 78 CVVKNVAGTRES---TDAVLRVLVK-----PYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP------- 141 (977)
Q Consensus 78 C~a~n~~g~~~s---~~~~l~V~~~-----P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~------- 141 (977)
|.+.|..+.... ....|.|..+ |.+.. ......+.+|+.+.|.|.+.|.|.+.|.|+|++..+.
T Consensus 182 C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~ 261 (388)
T 2v5m_A 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL 261 (388)
T ss_dssp EEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCC
T ss_pred EEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccc
Confidence 999997643221 1235666654 22211 2344578899999999999999999999999854332
Q ss_pred CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE
Q psy574 142 EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221 (977)
Q Consensus 142 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~ 221 (977)
..++. ..++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...|....+.+|+.++|.|.+.|.|.+.+.
T Consensus 262 ~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~ 340 (388)
T 2v5m_A 262 NDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340 (388)
T ss_dssp SSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEE
T ss_pred cCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEE
Confidence 12332 35679999999999999999999999999999999999999999888988899999999999999999999999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
|+++|..+.. +.+.|.|.++..+|+|.|+ |.|.|..|....++.|.|
T Consensus 341 W~~~g~~i~~----------------~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 341 WMKDGKAIGH----------------SESVLRIESVKKEDKGMYQ-CFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEETTEECSC----------------CSSEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEE
T ss_pred EEECCEECcc----------------CCCEEEEecCChhhCEEEE-EEEEcCCCcEEEEEEEEe
Confidence 9999987631 1238999999999999999 999999999999888876
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=289.09 Aligned_cols=337 Identities=15% Similarity=0.153 Sum_probs=238.1
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEee--CCC---ceEE
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ--TAN---GLTL 416 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~-~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~--~~~---sv~l 416 (977)
...+.|.++.+...|.|++.|.|..|.. ..+....+... ....+|++|.++.+... +.+ ++.|
T Consensus 222 ~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~-----------~~~~pp~~P~~l~~~~~~~~~~g~~sv~l 290 (680)
T 1zlg_A 222 DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSS-----------KDPSAPPAPANLRLANSTVNSDGSVTVTI 290 (680)
T ss_pred CCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcC-----------CCCCCCCCCCceEeeeeeecCCCceEEEE
Confidence 4468899999999999999999998832 21111222111 11146899999999888 778 9999
Q ss_pred EEEcCCCCCCcccceEEEEEeec-CCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCC
Q psy574 417 AWSRNNQIGSSSLLGYQVEMYSR-PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495 (977)
Q Consensus 417 sW~~p~~~~~~~i~~Y~I~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~ 495 (977)
+|.+|.. .++++.+|.|+|+.. +... ......|..........+++|.+|.|++.|.|+|+|.|..|.|.+|.
T Consensus 291 ~W~pP~~-~~g~i~~Y~V~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~ 364 (680)
T 1zlg_A 291 VWDLPEE-PDIPVHHYKVFWSWMVSSKS-----LVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364 (680)
T ss_pred EecCCCC-CCCceeEEEEEEEecccccc-----cCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCC
Confidence 9998876 568899999999832 1110 01122677766555668899999999999999999999999998877
Q ss_pred CCceEEee--ccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEE-----------
Q psy574 496 LSDEIVLR--GTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKL----------- 562 (977)
Q Consensus 496 ~s~~~~~~--~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~l----------- 562 (977)
....+.+. ...| . +.++++...+.++|.|
T Consensus 365 ~~~~v~~~T~~~~P-------------------------------------~-p~~l~~~~~s~tsi~lp~~~~~~~~~l 406 (680)
T 1zlg_A 365 AKVSLHFTSTHATN-------------------------------------N-KEQLVKTRKGGIQTQLPFQRRRPTRPL 406 (680)
T ss_pred CceeEEEECCCCCC-------------------------------------C-ccccccccccCccccccccccCCCccc
Confidence 64333331 1111 1 2456677777777766
Q ss_pred EEEec-CCCccceEEEEEEecCCCC--C----c------------eEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 563 TWEIL-NTDYIEGVYIYSRGLDPPA--S----V------------AMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 563 sW~~p-~~~~i~~Y~v~y~~~~~~~--~----~------------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+|++| ....+.+|+|.|+..+... . | ..... .....++++|.+|+|++.|.|+|+|.|..
T Consensus 407 ~W~~P~~~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~ 485 (680)
T 1zlg_A 407 EVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASS-GMTHENYIILQDLSFSCKYKVTVQPIRPK 485 (680)
T ss_pred cccCCcccCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeee-eeccCceEEecCCCCCCeEEEEEEEecCC
Confidence 99988 4445668888887765321 1 1 11111 12456789999999999999999999999
Q ss_pred eeCCCCCceEEeccC-----------------CCCC-----CCCce----eEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 624 VDGKPSNLRAVRTLE-----------------CEPS-----GVPQL----TDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 624 g~g~~s~~~~~~T~~-----------------~~P~-----~~P~~----v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
|.+. +....|.|.. ..|. ++|.+ +.+...+.+ |.|+|++|. ...||.|++|
T Consensus 486 G~s~-~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~-~~~ng~I~gY 562 (680)
T 1zlg_A 486 SHSK-AEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-GHFSWKMAK-ANLYQPMTGF 562 (680)
T ss_pred CCCC-ccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEeccCce-EEEEecCCC-CCCCCCceeE
Confidence 9664 2222222221 1122 57888 666666666 999999985 3459999999
Q ss_pred EEEEEecCCcc----eEE------EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 678 QIIVGGGNNSA----LIN------MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 678 ~v~~~~~~~~~----~~~------~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+..+... ... ..+.++.++++|.+|+|++.|.|+|+|+|.+|.|++ .++.++|....
T Consensus 563 ~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~ 633 (680)
T 1zlg_A 563 QVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELP 633 (680)
T ss_pred EEEEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCC
Confidence 99998653111 111 123456789999999999999999999999999998 78888887654
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=273.16 Aligned_cols=261 Identities=15% Similarity=0.194 Sum_probs=203.0
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+..+.+.+|+.++|.|....+.|.+.|.|+|||+.+.. ..|+.+..+ .+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~ 85 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS 85 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE
Confidence 34578999999999999876789999999999999953 346665543 3799999999999999999999887543
Q ss_pred eEeEEEEEEc------------CCeEEeCCC-ceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCC-CceEEecc---
Q psy574 89 STDAVLRVLV------------KPYIIRGPK-DTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPE-DRMSVLPS--- 150 (977)
Q Consensus 89 s~~~~l~V~~------------~P~~~~~p~-~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~-~~~~~~~~--- 150 (977)
.+.|.|.. +|.+...+. ...+.+|+++.|.|.+. +.|.+.+.|+|++..+.. .++.+..+
T Consensus 86 --s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~ 163 (312)
T 2y23_A 86 --SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163 (312)
T ss_dssp --EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTT
T ss_pred --EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCC
Confidence 45566653 666555443 77899999999999998 899999999999998865 44444432
Q ss_pred --ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE-------------------EeeCCeEEecCCCcEEeeCCeEEEE
Q psy574 151 --RSLQLSDVRLEDAGEYVCEAENAVGKISASATLT-------------------VQMAPIVRERPSDLRLEVGRDAVFL 209 (977)
Q Consensus 151 --~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~-------------------V~~~p~~~~~p~~~~v~~G~~v~L~ 209 (977)
..|.|.+++.+|+|.|+|.|.+..........+. ...+|.+.... ...+.+|+.++|.
T Consensus 164 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~ 242 (312)
T 2y23_A 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLK 242 (312)
T ss_dssp TEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEE
T ss_pred CEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEE
Confidence 2399999999999999999987554433333331 01235555333 3688999999999
Q ss_pred EEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 210 CGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 210 C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
|.+.+.|.+ .+.|++++..+.. ..++.+. ++...|.|.+++.+|+|.|+ |.|.|..|....++.|.|+
T Consensus 243 C~~~~~p~~~~v~W~~~g~~~~~-----~~~~~~~---~~~~~L~I~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 243 CKVANIKKETHIVWYKDEREISV-----DEKHDFK---DGICTLLITEFSKKDAGIYE-VILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEESCCSSCEEEEEETTEEEEE-----ECCC-------CEEEEEECSCSGGGCEEEE-EEEESTTCCEEEEEEECSC
T ss_pred EEEcCCCCCCEEEEeeCCEECCC-----CCcEEEE---CCEEEEEECcCCHHHCEEEE-EEEEcCCCceeeeeEEEec
Confidence 999999988 9999999988752 2333333 24569999999999999999 9999999999998888764
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=277.65 Aligned_cols=263 Identities=17% Similarity=0.207 Sum_probs=204.0
Q ss_pred cceEEeCCCcEEEEEECCCC---------CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEe
Q psy574 13 KSQRVAAGDTALLECGPPRG---------HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKN 82 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g---------~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n 82 (977)
..+.+.+|++++|.|.+ .+ +|.+.|.|+|+|..+.... .+ ..+++|.|.+++.+|+| .|+|.|.|
T Consensus 37 ~~v~v~eG~~v~L~C~~-~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~-~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n 111 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPP-IEDSLLSHRYNDKDNVVNWEKIGKTRRPLN-RR---VKNGDLWIANYTSNDSHRRYLCTVTT 111 (329)
T ss_dssp EEEEECTTSCEEECCHH-HHCTTTGGGSCCTTCEEEEEECSSSCEECS-TT---EETTEEEESSCCGGGGGCCEEEEEEC
T ss_pred ceEEEECCCeEEEEccC-CCCccccccccCCCCeeEEEECCCCccccC-ce---eecceEEEcCCChHhCCCcEEEEEEe
Confidence 56789999999999988 34 3678999999998875422 22 34789999999999999 99999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCC--CceEEeccceEEEccCc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~ 159 (977)
..|......+.+.+..+|.+...+....+.+|+++.|.|.+.|.| .+.+.|+|++..+.. .++.. .++.|.|.+++
T Consensus 112 ~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~-~~~~L~I~~v~ 190 (329)
T 3oq3_B 112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ-SGQNLIIHNPE 190 (329)
T ss_dssp TTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE-ETTEEEECSCC
T ss_pred CCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec-CCCEEEEeecC
Confidence 887655444444555566655444444567899999999999999 899999999998853 34444 37899999999
Q ss_pred cCCCeEEEEEEEeC--Cee----EEEEEEEEEeeCC----eEEecCCCcEEeeCCeEEEEEEEecCC---CC-eEEEEEc
Q psy574 160 LEDAGEYVCEAENA--VGK----ISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCGIEGSP---PP-STFWMLE 225 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~--~g~----~~~~~~L~V~~~p----~~~~~p~~~~v~~G~~v~L~C~~~g~p---~~-~i~W~~~ 225 (977)
.+|+|.|+|.|.|. .|. .+..+.|.|..+| .+. .|....+.+|+.++|.|.+.+.| .+ .+.|+++
T Consensus 191 ~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~ 269 (329)
T 3oq3_B 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269 (329)
T ss_dssp GGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECT
T ss_pred hhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEEC
Confidence 99999999999986 443 3445888998776 444 67778999999999999999998 77 8899999
Q ss_pred CeeeeecCCCccccEEE--EEccCCceEEEEeecccCCCC-eEEEEEEEcCCCceeEEEEEEEE
Q psy574 226 GNRSLIYPGDRVDNIQA--EITSDGMNLLKIQNVSRTAAP-LIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~--~~~~~g~s~L~I~~v~~~d~G-~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
|..+.... ...+.. .......+.|.|.+++.+|+| .|+ |.|.|..|.....+.|.|+
T Consensus 270 g~~i~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~-C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 270 SGWIIGLD---FGVYSILTSSGGITEATLYFENVTEEYIGNTYT-CRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp TSCBCCBC---SSEEEEEEEETTEEEEEEEESSCCGGGTTCEEE-EEEECSSCEEEEEEEEEEC
T ss_pred CeeeeccC---CceeeeecccCceeEeEEEEEeccHHHCCCcEE-EEEEecCCceEEEEEEEeC
Confidence 98753211 111111 110012358999999999999 999 9999999999888888763
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=261.23 Aligned_cols=239 Identities=18% Similarity=0.231 Sum_probs=198.8
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.|.+.|.++.+.+|+.++|.|.+ .+.|.+ .|.|+|||..+... ++.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~~---------~~~l~i~~~~~~d~G~Y~C~~~~~ 70 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQTS---------TPSYRITSASVNDSGEYRCQRGLS 70 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSCC---------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeecc---------CCeEEEecCCcccCeEEEEEEecC
Confidence 5889999999999999999999999 677777 99999999998422 567999999999999999999876
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.+ +..+.|.|..++... .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+..|.|.+++.+|
T Consensus 71 ~~---s~~~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~----~~~~~l~i~~~~~~d 142 (262)
T 3rjd_A 71 GR---SDPIQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF----HWNSNLTILKTNISH 142 (262)
T ss_dssp CC---CCCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGG
T ss_pred Cc---cccEEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc----CCCCeEEEEECChhh
Confidence 54 346788888766444 4556678899999999999 78889999999999887421 246789999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCC-Ce----EEEEEcCeeeeecCC
Q psy574 163 AGEYVCEAENAVGKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPP-PS----TFWMLEGNRSLIYPG 234 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~----i~W~~~g~~~~~~~~ 234 (977)
+|.|+|.|.|..+..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.|. +. +.|++++..+...
T Consensus 143 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-- 219 (262)
T 3rjd_A 143 NGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-- 219 (262)
T ss_dssp CEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--
T ss_pred CEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--
Confidence 9999999999998888888999984 45555555 667999999999999999886 53 6788988765311
Q ss_pred CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 235 ~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.+...|.|.++..+|+|.|+ |.|.|..|..
T Consensus 220 ------------~~~~~L~i~~v~~~d~G~Y~-C~a~n~~G~~ 249 (262)
T 3rjd_A 220 ------------NTSSEYQILTARREDSGLYW-CEAATEDGNV 249 (262)
T ss_dssp ------------ESCCEEEESSCCGGGCEEEE-EEEEETTSSC
T ss_pred ------------CCCceEEEEEechhhCeEEE-EEEEcccCce
Confidence 12348999999999999999 9999999975
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=271.74 Aligned_cols=268 Identities=21% Similarity=0.290 Sum_probs=209.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCC-----eEEEEeCCEEee-----------cCCCceEEEe--------cCcE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-----TLVWKKNGHPID-----------FENSKRLRLV--------DGTN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-----~v~W~k~g~~l~-----------~~~~~r~~~~--------~~g~ 62 (977)
.+...|.++.+..|++++|.|.+ .+.|.+ .|.|+|+|.... .....|+.+. .+++
T Consensus 2 Vvv~~P~~v~~~~G~~v~L~C~v-~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 80 (313)
T 4fqp_A 2 VVVQAPTQVPGFLGDSVTLPCYL-QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS 80 (313)
T ss_dssp CEEECCSEECCBTTSCEEECCEE-ECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCC
T ss_pred eEEcCCCEEEEecCCCEEEEEEE-ECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceE
Confidence 45568889999999999999998 554443 589999875321 1223444442 1357
Q ss_pred EEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP 141 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~ 141 (977)
|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..|+.+.+.|.+ .+.|.+.+.|++++..+.
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~ 160 (313)
T 4fqp_A 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160 (313)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred EEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccc
Confidence 9999999999999999987654444566778888889988887777788889999999987 578999999999988765
Q ss_pred CCceEEe-c------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecC-CCcEEeeCCeEEEEEE
Q psy574 142 EDRMSVL-P------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERP-SDLRLEVGRDAVFLCG 211 (977)
Q Consensus 142 ~~~~~~~-~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p-~~~~v~~G~~v~L~C~ 211 (977)
....... . ...|.|..+..+|.|.|+|.|.|..+. ....+.|.|..+|.+...+ ....+.+|+.++|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~ 240 (313)
T 4fqp_A 161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD 240 (313)
T ss_dssp EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEE
T ss_pred ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEE
Confidence 3221111 1 235899999999999999999997654 5667788888889886654 4446778899999999
Q ss_pred EecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 212 IEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 212 ~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
+.|+|.| .|.|+|+|..+.. . .. .. ++ .|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+.
T Consensus 241 ~~g~P~p~~v~W~~~~~~l~~-----~--~~-~~--~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 241 ARSNPEPTGYNWSTTMGPLPP-----F--AV-AQ--GA--QLLIRPVDKPINTTLI-CNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp EEEESCCCEEEEEETTBSCCT-----T--EE-EE--TT--EEEECCCSSCCEEEEE-EEEECSSCEEEEEEEEEEECC
T ss_pred ecCCCCCcEEEEEECCEECCC-----c--eE-Ee--CC--EEEECcCChhhCEEEE-EEEEeCCCcEEEEEEEEEEeC
Confidence 9999999 6999999987631 1 11 11 23 8999999999999999 999999999999999999984
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=264.95 Aligned_cols=270 Identities=21% Similarity=0.408 Sum_probs=217.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEecc---ceEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPS---RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.+...|.+..+.+|+.+.|.|.+.|.|. .+.|+| ++..+.. .++.+..+ ..|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4688888999999999999999999998875 899999 5666543 45555433 4899999999999999999999
Q ss_pred CCeeE-EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 173 AVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 173 ~~g~~-~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++.... ++ .
T Consensus 82 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~--~ 154 (291)
T 2wim_A 82 AKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI---SDNRFAMLA--NN--N 154 (291)
T ss_dssp SSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBC---CCSSEEECT--TS--C
T ss_pred ccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccccc---CCceEEEcc--CC--C
Confidence 88865 5678899999998888888889999999999999999999999999999776421 233444332 24 8
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCcee--EEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEEcc--CceEEE
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDL--ARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSVQW 325 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~~~--~p~i~W 325 (977)
|.|.+++.+|+|.|+ |.+.|..+... ....+.|.. +|.+...+. ...+..|+.+.|.|.+.+ .|.+.|
T Consensus 155 L~i~~v~~~d~G~Y~-C~~~n~~~~~~~~~~~~~~v~~-----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 228 (291)
T 2wim_A 155 LQILNINKSDEGIYR-CEGRVEARGEIDFRDIIVIVNV-----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 228 (291)
T ss_dssp EEETTCCGGGCEEEE-EEEEETTTTEEEEEEEEEEEEB-----CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEE
T ss_pred EEEEecchhhCEEEE-EEEEECCCCeeEEeeEEEEecc-----CCccccCcccccceecCCCeEEEEEEeecCCCCeEEE
Confidence 999999999999999 99999886543 445666666 455444443 445788999999999998 678999
Q ss_pred EECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 326 WRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 326 ~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+++|..+....++.+.. .++|.|.++...|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 229 ~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 99999998877776654 457999999999999999999999999999999998764
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-31 Score=305.88 Aligned_cols=348 Identities=14% Similarity=0.203 Sum_probs=233.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEEe----ec-----------CCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI----DF-----------ENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~l----~~-----------~~~~r~~~~~~-----g~L~ 64 (977)
..+|..+.+.+|++++|.|.+ .+. +.+.|.|+|+ +..+ .. ...+|+.+..+ ++|.
T Consensus 3 l~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 81 (434)
T 1igy_B 3 LQESGAELARPGASVKMSCKA-SGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIH 81 (434)
T ss_dssp EECCCCCEECTBCCEEECCEE-CSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEE
T ss_pred eECCCCeEecCCCCEEEEEEc-cCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEE
Confidence 346778899999999999999 554 3678999996 3221 10 12457777643 3799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
|.+++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++.
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~ 160 (434)
T 1igy_B 82 LSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 160 (434)
T ss_dssp ECSBCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred ECCCChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence 9999999999999999885432 23445778763 4555443333346899999999999876 776 999999987
Q ss_pred eCCC---------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee----------C--CeEEecCCC
Q psy574 139 AMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM----------A--PIVRERPSD 197 (977)
Q Consensus 139 ~l~~---------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~----------~--p~~~~~p~~ 197 (977)
.+.. +.+. ..+.|.|.++..+| |.|+|.|.|..+.......+.+.. + |.+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~ 237 (434)
T 1igy_B 161 SSGVHTFPAVLQSDLYT--LSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK 237 (434)
T ss_dssp CSSEEECCCEECSSCEE--EEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCC
T ss_pred CCCeEecCceecCCcEE--EEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCC
Confidence 5321 1111 23569999999889 999999999988744344443321 1 444333333
Q ss_pred cE--EeeCCeEEEEEEEecCC----CCeEEEEEcCeeeeecCCC-----ccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 198 LR--LEVGRDAVFLCGIEGSP----PPSTFWMLEGNRSLIYPGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 198 ~~--v~~G~~v~L~C~~~g~p----~~~i~W~~~g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.. +.+|+.++|.|.+.+.+ .+.|.|+|++..+...... ..+.+. ..+.|.|.+++.+|.|.|+
T Consensus 238 ~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~ 311 (434)
T 1igy_B 238 PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR------VVSALPIMHQDWLNGKEFK 311 (434)
T ss_dssp HHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCC------CCCCEECCHHHHHHTCCCB
T ss_pred hHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEE------EEEEEEECHHHccCCCcEE
Confidence 32 88999999999999884 3589999999765321100 011110 1247999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCCCcEE--E
Q psy574 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EG--SVQWWRGEREVGSGPRVN--V 340 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~~~~~--~ 340 (977)
|.|.|..|.......+.+.. ....+|.+...+.......|+.+.|.|.+.+ ++ .|.|+++|..+....... .
T Consensus 312 -C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 389 (434)
T 1igy_B 312 -CRVNSAAFPAPIEKTISKTK-GKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIM 389 (434)
T ss_dssp -CCBCCSSCSSCCCCCCCCCC-SCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCC
T ss_pred -EEEECCCCCCceeEEEeccC-CCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceecccee
Confidence 99999988653333332211 1112454433333333345778999999998 32 799999999874331111 1
Q ss_pred ecCc------eEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 341 TGDG------SLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 341 ~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
..++ .|.|......|.|.|+|.|.|....
T Consensus 390 ~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 390 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp CSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 2344 3556666666799999999997653
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=273.54 Aligned_cols=264 Identities=17% Similarity=0.267 Sum_probs=204.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE---------------eecCCCceEEEec----CcEEEEcCCCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP---------------IDFENSKRLRLVD----GTNLAIQDSRKTD 72 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~---------------l~~~~~~r~~~~~----~g~L~I~~v~~~D 72 (977)
|.++++.+|++++|.|.+..+.|.+.|.|+|++.. +......|+.+.. +++|.|.+++.+|
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD 85 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence 33688999999999999855566678999995422 2222345555542 3579999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeE--EeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe-
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYI--IRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL- 148 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~--~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~- 148 (977)
+|.|+|.|.|..+...+..+.+.+...|.+ ...+.......|+.+.|.|.+ .|.|.+.|.|+|++..+........
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~ 165 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN 165 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence 999999999875544556677787776644 445666677789999999986 7899999999999988754322221
Q ss_pred ----ccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCC-eE
Q psy574 149 ----PSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPP-ST 220 (977)
Q Consensus 149 ----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~-~i 220 (977)
....|.|..+..+|.|.|+|.|.|..+. .+..+.|.|..+|.+...+.. ..+..|+.++|.|.+.|.|.| .+
T Consensus 166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v 245 (308)
T 4fom_A 166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS 245 (308)
T ss_dssp SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence 2246999999999999999999998765 566778888888888766544 467788999999999999988 69
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|+|++..+.... . ..+...|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+
T Consensus 246 ~W~k~~~~~~~~~-----~------~~~~~~l~i~~v~~~d~G~Y~-C~A~N~~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 246 VWSRLDGQWPDGL-----L------ASDNTLHFVHPLTFNYSGVYI-CKVTNSLGQRSDQKVIYISD 300 (308)
T ss_dssp ECCBSSSCCCSSC-----B------CSTTEEECCSCCCSCCCSEEE-EEEEETTEEEEEEEECCEEC
T ss_pred EEEECCeECCCcE-----E------EcCCeEEEECCCChhhCEEEE-EEEEeCCCcEEEEEEEEEEc
Confidence 9999987653210 0 013346778999999999999 99999999999999999998
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=258.79 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=208.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|.+|.++.+...+.+++.|+|.++. +.+.+|.|+|+...... .|..........++++.+|.|+
T Consensus 19 ~~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~ 84 (290)
T 3r8q_A 19 PAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTG----------PMKEINLAPDSSSVVVSGLMVA 84 (290)
T ss_dssp -CCCCCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSS----------CCEEEEECTTCCEEEECSCCSS
T ss_pred CCCCCCCceEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCC----------ceEEEEcCCCccEEEeCCCCCC
Confidence 468899999999999999999999983 47899999998865433 6777666667889999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.|.++. ..+++... +.++.++++...
T Consensus 85 t~Y~~~V~a~~~~g~s~~s~--~~~~t~~~--------------------------------------~~~P~~l~~~~~ 124 (290)
T 3r8q_A 85 TKYEVSVYALKDTLTSRPAQ--GVVTTLEN--------------------------------------VSPPRRARVTDA 124 (290)
T ss_dssp CEEEEEEEEEETTEECCCEE--EEEECCCC--------------------------------------CCCCEEEEEEEE
T ss_pred CEEEEEEEEEeCCCCCCCcc--eeEecCCC--------------------------------------CCCCceeEEEEc
Confidence 99999999999999887662 22222111 112368899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++| ++.+.+|.|+|+..+....+ .. .......++.|.+|.|++.|.|+|+|.|..|.|.+.. +.+.
T Consensus 125 ~~~sv~l~W~~p-~~~~~~Y~v~~~~~~~~~~~-~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~ 199 (290)
T 3r8q_A 125 TETTITISWRTK-TETITGFQVDAVPANGQTPI-QR--TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDAS 199 (290)
T ss_dssp CSSCEEEEEECC-SCCCCEEEEEEEESSSCCCE-EE--EECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEEeCC-CCcccEEEEEEEECCCCcce-EE--ecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEE-EEec
Confidence 999999999998 45789999999987743322 22 2235778999999999999999999999999876543 4444
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceE-EEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALI-NMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
|. | .+|.++++...+.+++.|+|++|. |.+.+|.|+|+..+..... .....++.++++|.+|+|++.|.|
T Consensus 200 t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 270 (290)
T 3r8q_A 200 TA---I-DAPSNLRFLATTPNSLLVSWQPPR-----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTI 270 (290)
T ss_dssp CC---C-CCCEEEEEEEEETTEEEEEEECCS-----SCCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEE
T ss_pred CC---C-CCCCccEEEeeCCCEEEEEEeCCC-----CcccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEE
Confidence 43 3 377899999889999999999983 5789999999986533222 223446788999999999999999
Q ss_pred EEEEEcCCCcCCC
Q psy574 715 SLAATNRAGTGPY 727 (977)
Q Consensus 715 ~V~A~~~~G~g~~ 727 (977)
+|+|+|.+|.|.+
T Consensus 271 ~V~A~~~~g~s~p 283 (290)
T 3r8q_A 271 YVIALKNNQKSEP 283 (290)
T ss_dssp EEEEEETTEECCC
T ss_pred EEEEEeCCCcCCc
Confidence 9999999998763
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=275.05 Aligned_cols=276 Identities=18% Similarity=0.223 Sum_probs=218.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.|... .+..+.+|+++.|.|.+.+. |.+.|.|+|++..+... ++.+. ....|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 84 (317)
T 2y25_A 6 TGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 84 (317)
T ss_dssp SCCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred CCCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence 46777644 46889999999999999877 78999999999988743 33332 34689999999999999999999999
Q ss_pred eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec----------CCCCeEEEEEcCeeeeecCCCccccEEEEE
Q psy574 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG----------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g----------~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
|.....+.|.|..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+. ...++....
T Consensus 85 g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~-----~~~~~~~~~ 159 (317)
T 2y25_A 85 GKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-----YSDRVKTGV 159 (317)
T ss_dssp CEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCC-----CCSSEEEEE
T ss_pred CcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECC-----CCCCeEEec
Confidence 9888787777776665544444555667777777777766 7889999999998764 334555554
Q ss_pred ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC----------------CCCCCCCeEEeCCCceeecCC
Q psy574 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG----------------PDPNPPPVILFGPANQTLPLR 308 (977)
Q Consensus 245 ~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~----------------~~~~~pp~i~~~p~~~~v~~g 308 (977)
. .+...|.|.+++.+|+|.|+ |.|.|..|....+..|.|.. .....|+.+...|....+..|
T Consensus 160 ~-~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 237 (317)
T 2y25_A 160 T-GEQIWLQINEPTPNDKGKYV-MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237 (317)
T ss_dssp C-SSEEEEEEESCCGGGCEEEE-EEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred c-CCEEEEEECcCCcccCeeEE-EEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence 3 34467999999999999999 99999999888877776541 111223344445667889999
Q ss_pred CcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecC-c---eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD-G---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 309 ~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~-~---sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+.+.|.|.+.+ .|.+.|+++|..+....++.+... + .|.|.++...|+|.|+|.|.|..|..+.++.|.|..|
T Consensus 238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 99999999998 678999999999988877777654 4 7999999999999999999999999999999988743
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=263.41 Aligned_cols=265 Identities=20% Similarity=0.244 Sum_probs=208.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.+...|.++.+.+|++++|.|.+ .+ .|.|++++.... +.... .++.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~-~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 73 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVS-NG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELED 73 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEEC-SS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred CcEecCCCceEEECCCCCEEEEEEe-CC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence 4566677788999999999999998 44 499998764331 11111 2468999999999999999999987
Q ss_pred CceeeeEeEEEEEEcCCe-EEeCCCceEEeCCCeEEEEEEecccCceE-EEEEE-CCeeCC-CCceEEeccceEEEccCc
Q psy574 84 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKR-LGSAMP-EDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k-~~~~l~-~~~~~~~~~~~L~I~~v~ 159 (977)
.+. .+..+.|.|..+|. +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+. ..++.+..++.|.|.+++
T Consensus 74 ~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 152 (289)
T 3ejj_X 74 PMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAK 152 (289)
T ss_dssp -----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCC
T ss_pred CCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecc
Confidence 765 46778899988776 67778888999999999999998877665 99987 555554 346666678899999999
Q ss_pred cCCCeEEEEEEE-eCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecC
Q psy574 160 LEDAGEYVCEAE-NAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 160 ~~D~G~Y~C~a~-n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~ 233 (977)
.+|+|.|+|.|. +..+..+..+.|.|. .+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+....
T Consensus 153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~ 232 (289)
T 3ejj_X 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232 (289)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred cccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence 999999999999 455556778899998 6888988888888899999999999998 7899999999998763210
Q ss_pred CCc--cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 234 GDR--VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 234 ~~~--~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ...+. ..+.|.|.+++.+|+|.|+ |.|.|..|....++.|.+..
T Consensus 233 ~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 233 NSDFQDNYYK------KVRALSLNAVDFQDAGIYS-CVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp EEEECSSSEE------EEEEEEESSCCSSSCEEEE-EEEECSSCEEEEEEEEECC-
T ss_pred CcccccceEE------eeEEEEEEeecccCCEEEE-EEEEcCCCCccccEEEEEEe
Confidence 000 00111 1248999999999999999 99999999999999998876
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=275.33 Aligned_cols=273 Identities=15% Similarity=0.269 Sum_probs=206.2
Q ss_pred cccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEee--cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~--~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
....+.+.+|++++|.|.+ .+.| .+.|.|+|+|..+. .....|+... ++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 11 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 88 (315)
T 1itb_B 11 EKIILVSSANEIDVRPCPL-NPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCL 88 (315)
T ss_dssp CCCCCEEETTSCCCCBCCC-CSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred CceEEEEcCCCcEEEEeec-cCcCCCceEEEEeCCCcCccccccCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEE
Confidence 3446889999999999998 5555 78999999997543 2335566655 5689999999999999999999987764
Q ss_pred eeEeEEEEEE-cCCeEEeCC---CceEEeCCCeEEEEEEe------cccCceEEEEEECCeeCCCCce-EEeccceEEEc
Q psy574 88 ESTDAVLRVL-VKPYIIRGP---KDTTVSASSIIVFECSV------GGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLS 156 (977)
Q Consensus 88 ~s~~~~l~V~-~~P~~~~~p---~~~~v~~G~~v~l~C~v------~g~p~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~ 156 (977)
. ..+.+.|. .+|.+...+ ....+.+|+++.|.|.+ .|.|.+.+.|+|++..+..... ....++.|.|.
T Consensus 89 ~-~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~ 167 (315)
T 1itb_B 89 R-IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVM 167 (315)
T ss_dssp C-EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEES
T ss_pred E-EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEE
Confidence 3 23344433 345443333 23578899999999998 8899999999999999864322 23356799999
Q ss_pred cCccCCCeEEEEEEE-eCCeeE---EEEEEEEEe-----eCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 157 DVRLEDAGEYVCEAE-NAVGKI---SASATLTVQ-----MAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~-n~~g~~---~~~~~L~V~-----~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
+++.+|+|.|+|.|. |..|.. ...+.+.+. .+|.+...+.. ..+.+|+.++|.|.+.|.|.+.+.|+++|
T Consensus 168 ~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g 247 (315)
T 1itb_B 168 NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG 247 (315)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETT
T ss_pred eceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECC
Confidence 999999999999999 777764 445555554 56777665554 47889999999999999999999999999
Q ss_pred eeeeecCCCcccc-EEEEEcc-----CCceEEEEeecccCC-CCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 227 NRSLIYPGDRVDN-IQAEITS-----DGMNLLKIQNVSRTA-APLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~-----~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..+.......... +.+.... ...+.|.|.+++.+| +|.|+ |.|.|..|....++.|.|+.
T Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 248 SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT-CFAKNTHGIDAAYIQLIYPV 314 (315)
T ss_dssp EECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEE-EEEECTTCCEEEEEEEECCC
T ss_pred EECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceE-EEEecCCCceeEEEEEEecC
Confidence 8764321111111 1111100 012489999999999 99999 99999999999998888754
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=274.40 Aligned_cols=272 Identities=16% Similarity=0.250 Sum_probs=177.7
Q ss_pred ccceEEeCCCcEEEEEECCCCCCC-----------CeEEEEeCCEE----eecC---CCceEEEecCcEEEEcCCCCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPE-----------PTLVWKKNGHP----IDFE---NSKRLRLVDGTNLAIQDSRKTDD 73 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~-----------~~v~W~k~g~~----l~~~---~~~r~~~~~~g~L~I~~v~~~D~ 73 (977)
..++.+.+|++++|.|.+ .+.|. +.|.|+|++.. .... ...|+... ++.|.|.+++.+|+
T Consensus 14 ~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~D~ 91 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDT 91 (349)
T ss_dssp CCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE-TTEEEESSCCGGGC
T ss_pred eeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec-CCEEEEccCChhhC
Confidence 556889999999999998 66554 89999998842 1111 34455544 67899999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEE----eCCCceEEeCCCeEEEEEEe-----cccCceEEEEEECCeeCCCCc
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYII----RGPKDTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~----~~p~~~~v~~G~~v~l~C~v-----~g~p~~~i~W~k~~~~l~~~~ 144 (977)
|.|+|.|.|..+... ..+.|.|..+|... ..|....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+....
T Consensus 92 G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~ 170 (349)
T 4dep_C 92 GNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN 170 (349)
T ss_dssp EEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS
T ss_pred EEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc
Confidence 999999999877644 46788888766433 22446688999999999985 778999999999999986533
Q ss_pred eEEeccceEEEccCccCCCeEEEEEEEeCC-eeE---EEEEEEEEee------CCeEEecCCCc--EEeeCCeEEEEEEE
Q psy574 145 MSVLPSRSLQLSDVRLEDAGEYVCEAENAV-GKI---SASATLTVQM------APIVRERPSDL--RLEVGRDAVFLCGI 212 (977)
Q Consensus 145 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~~---~~~~~L~V~~------~p~~~~~p~~~--~v~~G~~v~L~C~~ 212 (977)
.....+..|.|.+++.+|+|.|+|.|.|.. |.. ++.+.|.|.. +|.+...+... .+.+|+.++|.|.+
T Consensus 171 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~ 250 (349)
T 4dep_C 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250 (349)
T ss_dssp SEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEE
T ss_pred ceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEE
Confidence 333355789999999999999999999976 443 6777788875 56665555433 78899999999999
Q ss_pred e----cCCCCeEEEEEcCeeeeecCCC-ccccEEEEEccC---CceEEEEeecccCCC-CeEEEEEEEcCCCceeEEEEE
Q psy574 213 E----GSPPPSTFWMLEGNRSLIYPGD-RVDNIQAEITSD---GMNLLKIQNVSRTAA-PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 213 ~----g~p~~~i~W~~~g~~~~~~~~~-~~~~~~~~~~~~---g~s~L~I~~v~~~d~-G~Y~~C~a~n~~g~~~~~~~l 283 (977)
. +.|.+.+.|+++|..+...... ............ ..+.|.|.++..+|. |.|+ |.|.|..|.....+.|
T Consensus 251 ~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~l 329 (349)
T 4dep_C 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV-CHARSAKGEVAKAAKV 329 (349)
T ss_dssp EECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CE-EEEECSSCEEEEECC-
T ss_pred EEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEE-EEEEcCCCcEEEEEEE
Confidence 8 5788999999999876431100 000000000001 123699999999999 9999 9999999999999888
Q ss_pred EEEC
Q psy574 284 TVSG 287 (977)
Q Consensus 284 ~V~~ 287 (977)
.|..
T Consensus 330 ~v~~ 333 (349)
T 4dep_C 330 KQKV 333 (349)
T ss_dssp ----
T ss_pred eeec
Confidence 8865
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=281.48 Aligned_cols=270 Identities=26% Similarity=0.414 Sum_probs=141.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
..|.++.+.+|++++|.|.+....|.+.|.|+|||..+.. ..|+.+. ++.|.|.+++.+|+|.|+|.+.|. |. .+
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~--~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~ 87 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVLVG-PQRLQVLNASHEDSGAYSCRQRLT-QR-VL 87 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCC--cccEEec-cceEEEeecccccCEEEEEEEEeC-Ce-EE
Confidence 3488899999999999999943447789999999998843 3455553 678999999999999999999988 54 44
Q ss_pred EeEEEEEEcC----------------------CeEEeC----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC
Q psy574 90 TDAVLRVLVK----------------------PYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED 143 (977)
Q Consensus 90 ~~~~l~V~~~----------------------P~~~~~----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~ 143 (977)
..+.|.|... |.+... +....+.+|+++.|.|.+.|.|.+.+.|+|++..+...
T Consensus 88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~ 167 (334)
T 1ry7_B 88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE 167 (334)
T ss_dssp -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTT
T ss_pred EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccc
Confidence 5667777643 333221 12357889999999999999999999999999887643
Q ss_pred ce----EE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC----CeEEe-cCCCcEEeeCCeEEEEEEEe
Q psy574 144 RM----SV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA----PIVRE-RPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 144 ~~----~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~----p~~~~-~p~~~~v~~G~~v~L~C~~~ 213 (977)
.. .. .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|... |.+.. .|....+.+|+.++|.|.+.
T Consensus 168 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~ 247 (334)
T 1ry7_B 168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247 (334)
T ss_dssp SSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB
T ss_pred ccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe
Confidence 21 11 14468999999999999999999999999888999999852 33332 35677899999999999999
Q ss_pred cCCCCeEEEEE----cCeeeeecCCCccccEEEEEc------cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 214 GSPPPSTFWML----EGNRSLIYPGDRVDNIQAEIT------SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 214 g~p~~~i~W~~----~g~~~~~~~~~~~~~~~~~~~------~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
+.|.+.+.|++ +|..+.... ...+.+... ....+.|.|.+++.+|+|.|+ |.|.|..|....++.|
T Consensus 248 g~p~p~v~W~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l 323 (334)
T 1ry7_B 248 SDAQPHIQWLKHVEVNGSKVGPDG---TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT-CLAGNSIGFSHHSAWL 323 (334)
T ss_dssp CSSCEEEEEEECCCGGGCSBCTTS---SBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEE-EEEEESSCCEEEEEEE
T ss_pred cCCCCeEEEEECCcCCCccccCCC---CeeEEEeecCccccccccccEEEEccCCHHHCEEEE-EEEeCCCCeEEEEEEE
Confidence 99999999999 665543211 111111111 011248999999999999999 9999999999999999
Q ss_pred EEECC
Q psy574 284 TVSGP 288 (977)
Q Consensus 284 ~V~~~ 288 (977)
.|...
T Consensus 324 ~V~~~ 328 (334)
T 1ry7_B 324 VVLPA 328 (334)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99874
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-29 Score=282.86 Aligned_cols=264 Identities=23% Similarity=0.360 Sum_probs=213.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE--EeecC---CCceEEEecCcEEEEcCCCCCCCe---EEEEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFE---NSKRLRLVDGTNLAIQDSRKTDDG---RYQCV 79 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~--~l~~~---~~~r~~~~~~g~L~I~~v~~~D~G---~Y~C~ 79 (977)
+.+.|.+..+.+|+.++|.|.+..+.|.+.|.|+|++. ..... ...++.+..+++|.|.+++.+|+| .|+|.
T Consensus 103 p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~ 182 (395)
T 1bih_A 103 SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182 (395)
T ss_dssp CCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEE
T ss_pred CCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEE
Confidence 34456678889999999999975788999999999862 11111 156788888899999999999999 99999
Q ss_pred EEecCceeeeEeEE--EEEEc----------CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---c
Q psy574 80 VKNVAGTRESTDAV--LRVLV----------KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---R 144 (977)
Q Consensus 80 a~n~~g~~~s~~~~--l~V~~----------~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~ 144 (977)
|.|..|........ +.+.. +|.+ .+.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+... +
T Consensus 183 a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 260 (395)
T 1bih_A 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR 260 (395)
T ss_dssp EECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSS
T ss_pred EEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCcee
Confidence 99988764432211 11111 2333 356778999999999999999999999999999988542 2
Q ss_pred eEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEE-EEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCe
Q psy574 145 MSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISA-SATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPS 219 (977)
Q Consensus 145 ~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~-~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~ 219 (977)
+... ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+...+.. ..+.+|+.++|.|.+.|.|.+.
T Consensus 261 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~ 340 (395)
T 1bih_A 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340 (395)
T ss_dssp EESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCC
T ss_pred EEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCe
Confidence 2221 2237999999999999999999999988554 899999999999998888 7899999999999999999999
Q ss_pred EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 220 i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+.|+++|..+. .+++.+.. + .|.|.++..+|+|.|+ |.|.|..|.....+.|.|
T Consensus 341 v~W~~~g~~~~------~~~~~~~~---~--~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 341 VVWSHNAKPLS------GGRATVTD---S--GLVIKGVKNGDKGYYG-CRATNEHGDKYFETLVQV 394 (395)
T ss_dssp CEEEETTEECC------SSSEEEET---T--EEEESSCCSTTCEEEE-EEEEETTEEEEEEEEEEE
T ss_pred eEEEECCEECC------CCceEEEC---C--EEEEeeCCcccCEEEE-EEEEccCCCceEEEEEEE
Confidence 99999998763 23555542 4 9999999999999999 999999999998888877
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=268.75 Aligned_cols=268 Identities=16% Similarity=0.248 Sum_probs=206.3
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC----CCCeEEEEeCC--E-------------EeecCCCceEEEe----cCcEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH----PEPTLVWKKNG--H-------------PIDFENSKRLRLV----DGTNL 63 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~----P~~~v~W~k~g--~-------------~l~~~~~~r~~~~----~~g~L 63 (977)
.+...|.++.+.+|++++|.|.+ .+. +.+.|.|+|++ . .+.....+|+.+. .+++|
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSF-ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp -----CEEEEEETTCCEEECCBC-SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred ceEEcCCcEEEEecCCEEEeeec-CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 44556778999999999999998 444 45689999954 1 2223345677765 34679
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEe--CCCceEEeCC---CeEEEEEE-ecccCceEEEEEECC
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR--GPKDTTVSAS---SIIVFECS-VGGDAVLTVHWKRLG 137 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~--~p~~~~v~~G---~~v~l~C~-v~g~p~~~i~W~k~~ 137 (977)
.|.+++.+|+|.|+|.+.+......+..+.|.|..+|.+.. .+....+.+| +.+.|.|. +.+.|.+.+.|+|++
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~ 174 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence 99999999999999985544333456778999999887643 5667788888 88999998 789999999999963
Q ss_pred eeCCCC------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC-CCcEEeeCCeEEEEE
Q psy574 138 SAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP-SDLRLEVGRDAVFLC 210 (977)
Q Consensus 138 ~~l~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p-~~~~v~~G~~v~L~C 210 (977)
...... .........|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+|.+...+ ....+.+|+.++|.|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C 254 (331)
T 3u83_A 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254 (331)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEE
T ss_pred CCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEE
Confidence 322111 1111123568889999999999999999999999999999999888877554 445688999999999
Q ss_pred EEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe-ecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 211 GIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ-NVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 211 ~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~-~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
.+.+.|.+. +.|++++..+.. . .... .+ .|.|. ++..+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 255 ~~~g~p~p~~i~W~~~~~~~~~-----~--~~~~---~~--~L~i~~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~~ 321 (331)
T 3u83_A 255 KADANPPATEYHWTTLNGSLPK-----G--VEAQ---NR--TLFFKGPINYSLAGTYI-CEATNPIGTRSGQVEVNITEA 321 (331)
T ss_dssp EEEEESCCCEEEEEETTBSCCT-----T--EEEE---TT--EEEECSCCCGGGCEEEE-EEEEETTEEEEEEEEECCBC-
T ss_pred eCcCCCCCCEEEEEECCCcccc-----c--ceec---Cc--EEEEeCCCccccCeEEE-EEEEeccccceEEEEEEEecc
Confidence 999999998 999999987631 1 1111 24 89999 99999999999 999999999999999998873
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=280.43 Aligned_cols=276 Identities=18% Similarity=0.255 Sum_probs=218.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCC-------CCCCCeEEEEeCCEEe--ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR-------GHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~-------g~P~~~v~W~k~g~~l--~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
.|.|...|.++.+.+|++++|.|.+ . +.|.+.|.|+|+|..+ ......|+.. .++.|.|.+++.+|+|.
T Consensus 18 ~p~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~ 95 (339)
T 3o4o_C 18 CRFRGRHYKREFRLEGEPVALRCPQ-VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-QDGALWLLPALQEDSGT 95 (339)
T ss_dssp CEEEEECSCCEEEETTBCCEEECTT-SCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-ETTEEEESSBCTTCCEE
T ss_pred hHhhCcCceEEEEECCccEEEEecc-ccccccccCCCCceEEEEECCCCcccCccccccEEe-eCCeEEECCCCcccCEE
Confidence 4778899999999999999999998 5 8899999999999884 3332556664 47899999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEE--eCCCceEEeCCCeEEEEEE-----ecccCceEEEEEECCeeCCCC--ceE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECS-----VGGDAVLTVHWKRLGSAMPED--RMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~--~~p~~~~v~~G~~v~l~C~-----v~g~p~~~i~W~k~~~~l~~~--~~~ 146 (977)
|+|.+.|..|. .+..+.|.|..+|... .......+.+|+.+.|.|. +.|.|.+.+.|+|++..+... ++.
T Consensus 96 Y~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~ 174 (339)
T 3o4o_C 96 YVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL 174 (339)
T ss_dssp EECCEEETTEE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE
T ss_pred EEEEEECCcce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE
Confidence 99999998875 4566788888765432 2233457899999999999 788899999999999988654 444
Q ss_pred Eecc-ceEEEccCccCCCeEEEEEEEeCCe----eEEEEEEEEEee-----CCeEEecCCCcEEeeCCeEEEEEEE---e
Q psy574 147 VLPS-RSLQLSDVRLEDAGEYVCEAENAVG----KISASATLTVQM-----APIVRERPSDLRLEVGRDAVFLCGI---E 213 (977)
Q Consensus 147 ~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~-----~p~~~~~p~~~~v~~G~~v~L~C~~---~ 213 (977)
+..+ +.|.|.+++.+|+|.|+|.|.|..| ..+..+.|.|.. +|.+...+....+.+|+.++|.|.+ .
T Consensus 175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~ 254 (339)
T 3o4o_C 175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT 254 (339)
T ss_dssp ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS
T ss_pred EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC
Confidence 4433 5899999999999999999999877 467788888874 5677777777789999999999999 8
Q ss_pred cCC-CCeEEEEEcCeeeeecCC----CccccEEEEEccCCc----eEEEEeecccCCC-CeEEEEEEEcCCCceeEEEEE
Q psy574 214 GSP-PPSTFWMLEGNRSLIYPG----DRVDNIQAEITSDGM----NLLKIQNVSRTAA-PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 214 g~p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~----s~L~I~~v~~~d~-G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|.| .+.+.|++++..+..... ....++.... +|. +.|.|.++..+|. |.|+ |.|.|..|.....+.+
T Consensus 255 g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~~ 331 (339)
T 3o4o_C 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE--NNENYIEVPLIFDPVTREDLHMDFK-CVVHNTLSFQTLRTTV 331 (339)
T ss_dssp SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCC--SSSCEEEECCEECSSCCCSCCCCCE-EEEEETTEEECCBCCC
T ss_pred CCCCCceEEEEECCeecccccccccceecceEEecc--cCceEEEEEEEEEEechhhcCccEE-EEEEeccCceEEEEEh
Confidence 999 889999999876532111 0112222222 221 2799999999997 9999 9999999998877766
Q ss_pred EEE
Q psy574 284 TVS 286 (977)
Q Consensus 284 ~V~ 286 (977)
.+.
T Consensus 332 ~~~ 334 (339)
T 3o4o_C 332 KEH 334 (339)
T ss_dssp CC-
T ss_pred hHh
Confidence 544
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=251.41 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=207.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|.+|.++.+...+.+++.|+|.++. +.+.+|.|+|+...... .|..........++.+.+|.|+
T Consensus 13 ~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~ 78 (283)
T 1tdq_A 13 PVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEG----------GKTTFRLQPPLSQYSVQALRPG 78 (283)
T ss_dssp CSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSC----------CCEEEEECTTCSEEEECSCCTT
T ss_pred cCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCC----------CcEEEEeCCCCCEEEecCCCCC
Confidence 468999999999999999999999986 46889999997654332 5555555667889999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+. ...+.+ + +.++.++++...
T Consensus 79 t~Y~~~V~a~~~~g~s~~~--~~~~~t----~------------------------------------p~~P~~l~~~~~ 116 (283)
T 1tdq_A 79 SRYEVSISAVRGTNESDAS--STQFTT----E------------------------------------IDAPKNLRVGSR 116 (283)
T ss_dssp CEEEEEEEEEETTEECCCE--EEEEEC----C------------------------------------CCCCEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCCe--eEEEEC----C------------------------------------CCCCCceEEEec
Confidence 9999999999988776432 111111 1 112367899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCc---cceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGE---ASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~---~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
+.++|.|+|++|. +.+.+|.|+|+..+. ..+....+. .+ ..++.|.+|.|++.|.|+|+|.|..|.|.+.. +
T Consensus 117 ~~~sv~l~W~~p~-~~i~~Y~v~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~ 191 (283)
T 1tdq_A 117 TATSLDLEWDNSE-AEAQEYKVVYSTLAG-EQYHEVLVP--KGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT-M 191 (283)
T ss_dssp CSSCEEEEEECCS-SCCSEEEEEEEETTC-CCCEEEEEE--CCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE-E
T ss_pred CCCeEEEEecCCC-CCccEEEEEEEeCCC-CcceEEECC--CCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE-E
Confidence 9999999999986 579999999998764 444343333 33 78999999999999999999999998775432 3
Q ss_pred EEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceE
Q psy574 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
.+.| . |. +|.++++...+.+++.|+|++| +|.|.+|.|+|+..+. ......+..+.++++|.+|+|++.|
T Consensus 192 ~~~t--~-~~-~P~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y 261 (283)
T 1tdq_A 192 NART--E-LD-SPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSG-ISSEVTVPRDRTSYTLTDLEPGAEY 261 (283)
T ss_dssp EEEC--C-CC-CCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEECSSS-CCEEEEEESSCSEEEECCCCTTCCE
T ss_pred EecC--C-CC-CCCccEEeEecCCEEEEEEeCC-----CCcccEEEEEEEcCCC-CeeEEEeCCCccEEEECCCCCCCEE
Confidence 3333 2 22 6789999998999999999987 4789999999988553 2344566778899999999999999
Q ss_pred EEEEEEEcCCCcCCCCC
Q psy574 713 SVSLAATNRAGTGPYSR 729 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~ 729 (977)
.|+|+|+|.+|.|+.+.
T Consensus 262 ~~~V~A~~~~g~s~~~~ 278 (283)
T 1tdq_A 262 IISITAERGRQQSLEST 278 (283)
T ss_dssp EEEEEEEETTEECCCEE
T ss_pred EEEEEEEcCCCCCccee
Confidence 99999999999888664
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-26 Score=268.62 Aligned_cols=347 Identities=18% Similarity=0.209 Sum_probs=224.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeC--CEE---e-e----------cCCCceEEEecC-----cEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKN--GHP---I-D----------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~--g~~---l-~----------~~~~~r~~~~~~-----g~L~ 64 (977)
.+|..+.+.+|++++|.|.+ .+.+. ..|.|+|+ |+. + . ....+|+.+..+ .+|.
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIV-SGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLN 83 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEE-cccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEE
Confidence 45788999999999999998 44332 67999985 321 1 0 112467776632 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCc----------e--eeeEeEEEEEEc----CCeEEe-CCCceEEeCCCeEEEEEEeccc-
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG----------T--RESTDAVLRVLV----KPYIIR-GPKDTTVSASSIIVFECSVGGD- 126 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g----------~--~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G~~v~l~C~v~g~- 126 (977)
|.+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+.. .+.......|+.++|.|.+.|.
T Consensus 84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~ 163 (512)
T 1zvo_C 84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYH 163 (512)
T ss_pred ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeee
Confidence 999999999999999987642 0 112345777763 454442 2322212357899999999776
Q ss_pred Cce-EEEEEECCeeCC--CCceEE------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEE-----------EEEEe
Q psy574 127 AVL-TVHWKRLGSAMP--EDRMSV------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA-----------TLTVQ 186 (977)
Q Consensus 127 p~~-~i~W~k~~~~l~--~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~-----------~L~V~ 186 (977)
|.+ .|+|++++.... ...... .....|.|.....+ .|.|+|.|.|..+.....+ .+.+.
T Consensus 164 P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~ 242 (512)
T 1zvo_C 164 PTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPT 242 (512)
T ss_pred cCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEe
Confidence 765 899999754321 000001 11235888888777 9999999999887654433 23333
Q ss_pred eC----------------------------------------------------CeEE-ecCCCcEEeeCCeEEEEEEEe
Q psy574 187 MA----------------------------------------------------PIVR-ERPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 187 ~~----------------------------------------------------p~~~-~~p~~~~v~~G~~v~L~C~~~ 213 (977)
.+ |.+. ..|....+.+|+.++|.|.+.
T Consensus 243 ~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~ 322 (512)
T 1zvo_C 243 AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVV 322 (512)
T ss_pred CCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEe
Confidence 22 3332 234444567899999999999
Q ss_pred cCCCC--eEEEEEcCeeeeecCC------CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 214 GSPPP--STFWMLEGNRSLIYPG------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 214 g~p~~--~i~W~~~g~~~~~~~~------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+..++ .|.|+++|..+..... ...+.|... +.|.|..+..+|.|.|+ |.|.|..+... ...+..
T Consensus 323 g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~------s~L~i~~~~~~d~g~y~-C~a~n~~~~~~-~~~~~~ 394 (512)
T 1zvo_C 323 GSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQH------SRLTLPRSLWNAGTSVT-CTLNHPSLPPQ-RLMALR 394 (512)
T ss_pred ceECCCeEEEEEECCEeccCceeccceecCCCCeEEEE------EEEEEchHHhcCCCeEE-EEEEeCCCCCC-ceeEEe
Confidence 87443 8999999987431000 011122221 47999999999999999 99999987654 333322
Q ss_pred EC-CCCCCCCeEE-eCCCceeecCCCcEE-EEEEEcc--Cc--eEEEEECCEEcCCCC----cEEEecCce-------EE
Q psy574 286 SG-PDPNPPPVIL-FGPANQTLPLRSEAR-LRCQVRG--EG--SVQWWRGEREVGSGP----RVNVTGDGS-------LV 347 (977)
Q Consensus 286 ~~-~~~~~pp~i~-~~p~~~~v~~g~~~~-L~C~~~~--~p--~i~W~~~g~~l~~~~----~~~~~~~~s-------l~ 347 (977)
.. .....+|.+. .++.. .|+.+. |.|.+.+ ++ .+.|++||..+.... ......+++ |.
T Consensus 395 ~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~ 470 (512)
T 1zvo_C 395 EPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLR 470 (512)
T ss_pred ecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEE
Confidence 11 1001244443 33332 788899 9999998 32 589999999886542 122233443 44
Q ss_pred EeccCCCCCeEEEEEEEcCCCce
Q psy574 348 LTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 348 I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
|......+.|.|+|.|.|.....
T Consensus 471 v~~~~~~~~g~YtC~v~h~~l~~ 493 (512)
T 1zvo_C 471 VPAPPSPQPATYTCVVSHEDSRT 493 (512)
T ss_pred ECchhcCCCCeEEEEEEecCCCC
Confidence 55555556999999999987654
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=258.01 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=207.7
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+|.+...+.+..+.+|++++|.|.+.| .+.|+|++..+ ......+..|.|.+++.+|+|.|+|.|.| |.
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~ 80 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL 80 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence 35688887888889999999999999987 89999999887 22333558999999999999999999999 44
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEEE-EcCeeeeecCCCccccEEEEEccCCceEEEE
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWM-LEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W~-~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I 254 (977)
...+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+. ...++.... .+ .|.|
T Consensus 81 -~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~-----~~~~~~~~~--~~--~L~i 149 (290)
T 2o26_X 81 -TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP-----TDLTFVPNP--KA--GITI 149 (290)
T ss_dssp -EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC-----TTCEEEEET--TT--EEEE
T ss_pred -cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC-----CCCceeeCC--CC--CEEE
Confidence 7888999998887777778889999999999999985 77 899995 5665542 233444332 24 8999
Q ss_pred eecccCCCC-eEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--Cce-EEEEECC
Q psy574 255 QNVSRTAAP-LIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGS-VQWWRGE 329 (977)
Q Consensus 255 ~~v~~~d~G-~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~-i~W~~~g 329 (977)
.+++.+|+| .|+ |.|.|..+... ..+.|.|... ...+|.+...+....+..|+.+.|.|.+.+ .|. +.|++++
T Consensus 150 ~~v~~~d~G~~Y~-C~a~n~~~~~~s~~~~l~V~~~-~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~ 227 (290)
T 2o26_X 150 KNVKRAYHRLCVR-CAAQRDGTWLHSDKFTLKVREA-IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMN 227 (290)
T ss_dssp ESCCGGGTTCEEE-EEEEETTEEEECCCEEEEEECC-CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEES
T ss_pred ecccHHHCCCEEE-EEEEECCceEEeEEEEEEEEeC-CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCC
Confidence 999999999 999 99999855533 3467777731 123788888888889999999999999999 555 9999998
Q ss_pred EEc----CCCCcE------EEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 330 REV----GSGPRV------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 330 ~~l----~~~~~~------~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
..+ ...... .....+.|.|.++...|+|.|+|.|.|..|..+..+.|.|.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 289 (290)
T 2o26_X 228 PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289 (290)
T ss_dssp SSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence 763 222221 1233457999999999999999999999999988888887643
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=282.06 Aligned_cols=308 Identities=13% Similarity=0.135 Sum_probs=225.1
Q ss_pred CCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCC-CCCeEEeeCCCceEEEEEcCCCCCCcccceEE
Q psy574 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP-TKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQ 433 (977)
Q Consensus 355 d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P-~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~ 433 (977)
..|.+.| +.|..|.........+. ..|.+| .++.+..++.+++.|+|.++.+.+...+. |.
T Consensus 134 c~g~~~C-c~n~cG~~C~~P~~~~~----------------~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~ 195 (680)
T 1zlg_A 134 CSGVKKC-CSNGCGHTCQVPKTLYK----------------GVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YV 195 (680)
T ss_pred CCCcccc-ccccccccccccceeee----------------cccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EE
Confidence 5677777 45666654332222222 568888 89999999999999999998654556667 99
Q ss_pred EEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeecccccccccc
Q psy574 434 VEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSE 513 (977)
Q Consensus 434 I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~ 513 (977)
|+|+...... ........|..+.. ....+++|.+|.|++.|.|+|+|+|..|.+.++..+..+++.....
T Consensus 196 V~~r~~~g~~---~~~~~~~~w~~v~~-~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~------ 265 (680)
T 1zlg_A 196 VQRRWNYGIH---PSEDDATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS------ 265 (680)
T ss_pred EEEEECCCCC---cCccccCceEEEEe-cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCC------
Confidence 9998753200 00001137887653 4567899999999999999999999999555555555555522201
Q ss_pred CCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe--CCC---eEEEEEEec--CCCccceEEEEEEec-C--
Q psy574 514 GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM--TST---SVKLTWEIL--NTDYIEGVYIYSRGL-D-- 583 (977)
Q Consensus 514 ~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~--~~t---sv~lsW~~p--~~~~i~~Y~v~y~~~-~-- 583 (977)
++.++.++++... +.+ +|.|+|++| .++.|.+|+|+|+.. +
T Consensus 266 -----------------------------pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~i~~Y~V~~~~~~~~~ 316 (680)
T 1zlg_A 266 -----------------------------APPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSK 316 (680)
T ss_pred -----------------------------CCCCCCceEeeeeeecCCCceEEEEEecCCCCCCCceeEEEEEEEeccccc
Confidence 1222357788877 788 999999988 678899999999932 1
Q ss_pred ---CCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCc---eEEeccCCCCCCCCceeEEEEecCcE
Q psy574 584 ---PPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL---RAVRTLECEPSGVPQLTDPVLLNATS 657 (977)
Q Consensus 584 ---~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~---~~~~T~~~~P~~~P~~v~~~~~~~~s 657 (977)
....|....+ ..+.++++|.+|.|++.|.|+|+|.|..|.|+++.. +.++|.+.+|. |.++.+...+.++
T Consensus 317 ~~~~~~~~~~~~v--~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~--p~~l~~~~~s~ts 392 (680)
T 1zlg_A 317 SLVPTKKKRRKTT--DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN--KEQLVKTRKGGIQ 392 (680)
T ss_pred ccCCccceEEEEE--cCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC--ccccccccccCcc
Confidence 1234554433 246689999999999999999999999999988876 88999999886 7789988888888
Q ss_pred EEE-----------EeeCCCCCCCCeeeeEEEEEEEecCCcc--------------------eEEEEecCCcCeEEecCC
Q psy574 658 VLL-----------KWKPPPVGTHNGVIRTYQIIVGGGNNSA--------------------LINMTVSASTPTLLLTNL 706 (977)
Q Consensus 658 v~v-----------~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~L 706 (977)
+.| +|.+|. ..+ .+.+|+|.|+..+... ..........++++|.+|
T Consensus 393 i~lp~~~~~~~~~l~W~~P~--~~~-~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 469 (680)
T 1zlg_A 393 TQLPFQRRRPTRPLEVGAPF--YQD-GQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDL 469 (680)
T ss_pred ccccccccCCCccccccCCc--ccC-CcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCC
Confidence 877 999984 333 4568999887643211 011123456788999999
Q ss_pred CCCceEEEEEEEEcCCCcCC
Q psy574 707 SAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 707 ~p~t~Y~~~V~A~~~~G~g~ 726 (977)
+|++.|.|+|+|+|.+|.|.
T Consensus 470 ~p~t~Y~~~V~A~n~~G~s~ 489 (680)
T 1zlg_A 470 SFSCKYKVTVQPIRPKSHSK 489 (680)
T ss_pred CCCCeEEEEEEEecCCCCCC
Confidence 99999999999999999776
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=262.87 Aligned_cols=264 Identities=19% Similarity=0.317 Sum_probs=186.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCCEEe----ec---CCCceEEEe--------cCcEEEEcCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPI----DF---ENSKRLRLV--------DGTNLAIQDSR 69 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~~l----~~---~~~~r~~~~--------~~g~L~I~~v~ 69 (977)
..|...|.++.+.+|++++|.|.+ .+. |.+.|.|+|++..+ .. ....|+.+. .+++|.|.+++
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~ 82 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTV-TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT 82 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEE-SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred eEEEcCCCceEEecCCcEEEEEEc-cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence 356777889999999999999999 555 88999999987532 11 112355542 24579999999
Q ss_pred CCCCeEEEEEEEecCce----eeeEeEEEEEEcCCe--EEeCCCceEEeCCCeEEEEEEecccCce--EEEEEECCeeCC
Q psy574 70 KTDDGRYQCVVKNVAGT----RESTDAVLRVLVKPY--IIRGPKDTTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMP 141 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P~--~~~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~ 141 (977)
.+|+|.|+|.|.|..+. ..+..+.|.|..+|. .+..| ...+.+|+.+.|.|.+.|.|.+ .+.|+|++..+.
T Consensus 83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~ 161 (327)
T 2wng_A 83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 161 (327)
T ss_dssp GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence 99999999999998653 123456888876653 23334 4678899999999999888765 899999999887
Q ss_pred CCceEEe---------ccceEEEccCccCCCeEEEEEEEeCCee---EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEE
Q psy574 142 EDRMSVL---------PSRSLQLSDVRLEDAGEYVCEAENAVGK---ISASATL--TVQMAPIVRERPSDLRLEVGRDAV 207 (977)
Q Consensus 142 ~~~~~~~---------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~ 207 (977)
....... ....|.|.....+|.|.|+|.|.|..+. ....+.+ .+..+|.+...+.. +.+|+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~ 239 (327)
T 2wng_A 162 DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVN 239 (327)
T ss_dssp CEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCE
T ss_pred ccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEE
Confidence 5433222 1235777777777889999999998764 3444554 44578887766554 77999999
Q ss_pred EEEEEecCC-CC-eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCceeE
Q psy574 208 FLCGIEGSP-PP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279 (977)
Q Consensus 208 L~C~~~g~p-~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~ 279 (977)
|.|.+.|.+ ++ .+.|+++|..+.... ...+....+|. +.|.|..+..+|.|.|+ |.|.|..+....
T Consensus 240 l~C~~~g~~p~~~~v~W~k~g~~l~~~~-----~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~~~~~s 311 (327)
T 2wng_A 240 VTCQVRKFYPQRLQLTWLENGNVSRTET-----ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLT-CQVEHDGQPAVS 311 (327)
T ss_dssp EEEEEEEEBSSCEEEEEEETTEEEEEEE-----CCSCEECTTSCEEEEEEEEC-------CCEEE-EEEEETTCCCEE
T ss_pred EEEEEccccCCCcEEEEEECCeEccCcc-----cCceEECCCCcEEEEEEEEEccccccCCCEEE-EEEEeCCCCCch
Confidence 999999854 44 799999998874321 11111121232 37899999999999999 999999986533
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-29 Score=274.53 Aligned_cols=271 Identities=24% Similarity=0.364 Sum_probs=139.2
Q ss_pred eCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
..|.+..+.+|+++.|.|.+.+. |.+.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|. |.....+.
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~ 91 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence 34778899999999999999776 67899999999988654322336789999999999999999999998 77777888
Q ss_pred EEEeeCC----------------------eEEec----CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 183 LTVQMAP----------------------IVRER----PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 183 L~V~~~p----------------------~~~~~----p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
|.|...+ .+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+.... .
T Consensus 92 l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~ 169 (334)
T 1ry7_B 92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH--R 169 (334)
T ss_dssp ---------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS--S
T ss_pred EEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc--c
Confidence 8887543 22211 123478899999999999999999999999998764211 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEE-eCCCceeecCCCcEEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL-FGPANQTLPLRSEARLRC 315 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~-~~p~~~~v~~g~~~~L~C 315 (977)
...+.. ..+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|...... +|.+. ..|....+..|+.+.|.|
T Consensus 170 ~~~~~~---~~~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~~~~~-~p~~~~~~~~~~~~~~G~~v~l~C 244 (334)
T 1ry7_B 170 IGGIKL---RHQQWSLVMESVVPSDRGNYT-CVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFHC 244 (334)
T ss_dssp TTCCCC---CTTTTEEEECSCCGGGCCCEE-EEEEETTEEEEEEEEEEEECCCCS-SCBCCTTCSCCEEEESSCCEEECC
T ss_pred ccceec---ccceEEEEECCCCcccCEEEE-EEEEeCCCCEEEEEEEEEecCCCC-CCceEecCCCceEEeCCCCEEEEE
Confidence 111111 123458999999999999999 999999999888889999874322 23333 345678899999999999
Q ss_pred EEcc--CceEEEEE----CCEEcCCCCc--EEEec----------CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 316 QVRG--EGSVQWWR----GEREVGSGPR--VNVTG----------DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 316 ~~~~--~p~i~W~~----~g~~l~~~~~--~~~~~----------~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+.+ .+.+.|++ +|..+....+ +.+.. ...|.|.++...|+|.|+|.|.|..|....++.|.
T Consensus 245 ~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 324 (334)
T 1ry7_B 245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324 (334)
T ss_dssp CCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEE
T ss_pred EEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEE
Confidence 9998 67899999 6766644322 11111 12799999999999999999999999999999999
Q ss_pred EECCC
Q psy574 378 FESPT 382 (977)
Q Consensus 378 v~~~~ 382 (977)
|...+
T Consensus 325 V~~~~ 329 (334)
T 1ry7_B 325 VLPAE 329 (334)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 98543
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=252.93 Aligned_cols=270 Identities=12% Similarity=0.152 Sum_probs=192.7
Q ss_pred CCCceeecCCCcEEEEEEEcc---------CceEEEEECCEEcCCCCcEEEec--CceEEEeccCCCCCeEEEEEEEcCC
Q psy574 299 GPANQTLPLRSEARLRCQVRG---------EGSVQWWRGEREVGSGPRVNVTG--DGSLVLTDVTKEDSGEYTCVVKSPH 367 (977)
Q Consensus 299 ~p~~~~v~~g~~~~L~C~~~~---------~p~i~W~~~g~~l~~~~~~~~~~--~~sl~I~~v~~~d~G~Y~C~a~n~~ 367 (977)
.|.+..+..|++++|.|.+.+ .+.|.|+++|..+... ++.+.. .++|.|.++... .|.|+|.|.+.
T Consensus 10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~~~~~~L~i~~~~~~-~g~Y~C~a~~~- 86 (303)
T 1i1r_A 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASL-NIQLTCNILTF- 86 (303)
T ss_dssp ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEETTEEEEEECSCCCS-EEEEEEEEEET-
T ss_pred ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeCCcEEEEEEcCcCCC-ceEEEEecccC-
Confidence 466788999999999999983 4789999999988644 333333 246999999987 49999999884
Q ss_pred Cce---EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC
Q psy574 368 GSA---SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444 (977)
Q Consensus 368 G~~---~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~ 444 (977)
|.. ...+.+.+. .+|++|.++.+...+.+++.|+|.++.+. + .+.+|.|+|+.....
T Consensus 87 g~~~~~~~~~~l~v~----------------~~P~~P~~l~~~~~~~~~v~l~W~~~~~~-~-~~~~Y~v~~~~~~~~-- 146 (303)
T 1i1r_A 87 GQLEQNVYGITIISG----------------LPPEKPKNLSCIVNEGKKMRCEWDGGRET-H-LETNFTLKSEWATHK-- 146 (303)
T ss_dssp TTEEEEEEEEEEEEE----------------CCCCCCEEEEEEEETTSCCEEEEECCSCC-S-SCCEEEEEEEETTEE--
T ss_pred CCcceEEEEEEEecc----------------CCCCCCeeeEEEECCCCcEEEEccCCCCC-C-CCcCEEEEEEecCCC--
Confidence 433 233445554 45899999999888888999999999873 3 457999998754211
Q ss_pred CCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCC
Q psy574 445 SPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFP 524 (977)
Q Consensus 445 ~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~ 524 (977)
.|.........
T Consensus 147 ---------~~~~~~~~~~~------------------------------------------------------------ 157 (303)
T 1i1r_A 147 ---------FADCKAKRDTP------------------------------------------------------------ 157 (303)
T ss_dssp ---------CCCEECCSSCT------------------------------------------------------------
T ss_pred ---------CccCCCcCCCc------------------------------------------------------------
Confidence 11111111122
Q ss_pred CCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEE
Q psy574 525 DEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLV 604 (977)
Q Consensus 525 ~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i 604 (977)
+++.|
T Consensus 158 ---------------------------------------------------------------------------~~~~i 162 (303)
T 1i1r_A 158 ---------------------------------------------------------------------------TSCTV 162 (303)
T ss_dssp ---------------------------------------------------------------------------TEEEC
T ss_pred ---------------------------------------------------------------------------eEEEE
Confidence 44555
Q ss_pred CCC-CCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEE
Q psy574 605 TGL-AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIV 681 (977)
Q Consensus 605 ~~L-~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~ 681 (977)
.+| .|++.|.|+|.|.|..|.+. +....+.+....++.||.++.+... +.+++.|+|++| ...+|.|++|+|+|
T Consensus 163 ~~L~~p~t~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~y 239 (303)
T 1i1r_A 163 DYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQY 239 (303)
T ss_dssp SSCCCTTSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECC--GGGGTSCEEEEEEE
T ss_pred CCcCcccccEEEEEEEEcCCCCcc-cCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCC--CCCCcccEEEEEEE
Confidence 666 56666666666666666553 2234444444445568899988754 668999999999 55678999999999
Q ss_pred EecCCcceEEEEe---cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceEEeecCC
Q psy574 682 GGGNNSALINMTV---SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPALLSLTSG 738 (977)
Q Consensus 682 ~~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~~~t~~~ 738 (977)
+..+...+..... ....++++|.+|.|++.|.|+|+|+|.+|.|++ |+++.++|.++
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~ 302 (303)
T 1i1r_A 240 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302 (303)
T ss_dssp EETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred EeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence 9865443433322 456789999999999999999999999998776 57788877653
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=262.38 Aligned_cols=287 Identities=11% Similarity=0.097 Sum_probs=174.3
Q ss_pred CCCCCCCCCeEEeeC-CCceEEEEEcCCCC--CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQT-ANGLTLAWSRNNQI--GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~-~~sv~lsW~~p~~~--~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L 472 (977)
..|.||.++.+.... .+++.|+|.++... .++.+..|.|+|+..... .|...... . ......+
T Consensus 30 v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~-----------~w~~~~~~--~-~~~~~~~ 95 (380)
T 3lb6_C 30 IKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSE-----------TWKTIITK--N-LHYKDGF 95 (380)
T ss_dssp -CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCS-----------SCEEEEES--S-SEEEEEC
T ss_pred ccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCC-----------cceEEEec--c-EEEEEee
Confidence 458999999998776 68899999998862 345689999999886532 79887643 2 2344566
Q ss_pred CCCCeEEEEEEEEcC----CCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEE
Q psy574 473 TVGLTYTFLVRALNS----HGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIE 548 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~----~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~ 548 (977)
..+..|.|+|+|.|. .|.|.+|+++..++. ..+++. ++.+++
T Consensus 96 ~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~--~~~eg~--------------------------------P~~~P~ 141 (380)
T 3lb6_C 96 DLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYW--ISPQGI--------------------------------PETXVQ 141 (380)
T ss_dssp CTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEEC--CCCCSC--------------------------------TTSSCE
T ss_pred cCCCceEEEEEeecCCcccCCccCccccchhhcc--cCCCCC--------------------------------CCCCCc
Confidence 779999999999976 788888877766653 111111 133458
Q ss_pred EEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-Ee-ecCccceEEEC--CCCCCcEEEEEEEEeecc
Q psy574 549 LTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VL-HAGEASGFLVT--GLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~-~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~ 623 (977)
++++...+.+++.++|+++ ..+...+|.|+|+..+.. .+..+. .. ..+....+.+. ++.+++.|.|+|.|.|..
T Consensus 142 nl~C~~~~~~~l~csW~p~~~~~~~~~Y~l~y~~~~~~-~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~ 220 (380)
T 3lb6_C 142 DMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLD-HALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSEN 220 (380)
T ss_dssp EEEEEEETTTEEEEEEECC------CCEEEEEECTTCS-SCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC---
T ss_pred EeEEEECCCcEEEEEEcCCCCCCCCccEEEEEEECCCC-ccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCC
Confidence 9999999999999999998 445678999999986642 222221 11 11223356666 568999999999999988
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCC-eeeeEEEEEEEecCCcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN-GVIRTYQIIVGGGNNSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~n-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 702 (977)
|.+. +..+.+.+.+.+++.||.++++...+++++.|+|++|. ..+ +.+.+|+|+|+..+.. +...... +++.
T Consensus 221 G~~~-s~~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~--~~~~~~~l~Yev~y~~~~~~-w~~~~~~---~~~~ 293 (380)
T 3lb6_C 221 KPIR-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPL--GPIPARCFDYEIEIREDDTT-LVTATVE---NETY 293 (380)
T ss_dssp --CC-CEEEEECGGGSCCCCCCEEEEEC-------CEEEECCS--SSCCSTTEEEEECC---------CCEES---SSCC
T ss_pred eeec-cccEEEcHHHcccCCCCceEEEEEcCCCeEEEEECCCC--CCCCcceEEEEEEEEeCCCC-ceEeccc---ceEE
Confidence 7764 34467888887767799999998777889999999994 333 5789999999985322 2222221 3567
Q ss_pred ecC-CCCCceEEEEEEEEcC-----CC-cCCCCCceEEeecCC
Q psy574 703 LTN-LSAGIRYSVSLAATNR-----AG-TGPYSRPALLSLTSG 738 (977)
Q Consensus 703 l~~-L~p~t~Y~~~V~A~~~-----~G-~g~~S~~~~~~t~~~ 738 (977)
|.+ |+|++.|.|+|||... .| .|.||+++.+.|.+.
T Consensus 294 l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~~~ 336 (380)
T 3lb6_C 294 TLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDL 336 (380)
T ss_dssp ------------CCEEEEECTTTCSSCCCCCCCCC--------
T ss_pred EeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCCCC
Confidence 888 9999999999999954 23 377899999888653
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=254.25 Aligned_cols=268 Identities=19% Similarity=0.286 Sum_probs=212.9
Q ss_pred CCCCCCCCeEEeeCCC-ceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTAN-GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~-sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
++.+|.++.+...+.+ ++.|+|.++.. +.+.+|.|+|+...... ..+..........++.+.+|.|+
T Consensus 2 P~~~P~~l~~~~~~~~~sv~l~W~~~~~---~~~~~Y~v~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~L~p~ 69 (375)
T 3t1w_A 2 PLSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQ---------GNSLEEVVHADQSSCTFDNLSPG 69 (375)
T ss_dssp CCCCCEEEEEEEETTTTEEEEEEECCSC---SSCCEEEEEEEETTCTT---------SCCEEEEEETTCCEEEECCCCTT
T ss_pred CCCCCCccEEEecCCCeEEEEEEeCCCC---CCeeeEEEEEEECCCCC---------CcceeEEcCCCccEEEEcCCcCC
Confidence 4789999999999999 99999999865 46899999998865432 12333334567789999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.++. ..+....| + +.++++...
T Consensus 70 t~Y~~~V~a~~~~g~s~~~~----~~~~~~~p--------------~------------------------p~~l~~~~~ 107 (375)
T 3t1w_A 70 LEYNVSVYTVKDDKESVPIS----DTIIPEVP--------------Q------------------------LTDLSFVDI 107 (375)
T ss_dssp CCEEEEEEEEETTEECCCEE----EEECCCCC--------------C------------------------CSCCEEECC
T ss_pred CEEEEEEEEEcCCCCCCcEE----eeEcCCCC--------------C------------------------CceEEEEec
Confidence 99999999999887665431 22211111 1 245788889
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|+++.++.+.+|.|+|+..+....+..... .....++.|.+|.|++.|.|+|+|.|..|.|.++. ..+.
T Consensus 108 ~~~si~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~ 184 (375)
T 3t1w_A 108 TDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQ 184 (375)
T ss_dssp CSSEEEEECCCCCCTTEEEEEEEEEESSSCCSCEEEEE--CTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEEECCCCCCceEEEEEEEECCCCCceeEEEc--CCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeee
Confidence 99999999999977889999999998775433333332 35778999999999999999999999999998777 4555
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
| .|+ +|.++.+...+.+++.|+|++|+ ++.+.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|
T Consensus 185 t---~~~-~p~~l~~~~~~~~si~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 256 (375)
T 3t1w_A 185 T---AVP-PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVV 256 (375)
T ss_dssp C---CCC-CCEEEEEESCCSSCEEEEEECCS----SCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEEECSCCTTCEEEE
T ss_pred c---CCC-CCceeEEEecccCEEEEEEcCCC----CCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEE
Confidence 5 333 77899998888999999999983 477999999999865 45556667777889999999999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy574 715 SLAATNRAGTGPYSR 729 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~ 729 (977)
+|+|.|..|.|.++.
T Consensus 257 ~V~A~~~~g~s~~~~ 271 (375)
T 3t1w_A 257 SVSSVYEQHESTPLR 271 (375)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEcCCCcCCcee
Confidence 999999999987664
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=252.31 Aligned_cols=267 Identities=19% Similarity=0.261 Sum_probs=210.5
Q ss_pred CCCCCCCCeEEeeCCC-ceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTAN-GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~-sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
+|.+|.++.+...+.+ ++.|+|.++.. +.+.+|.|+++...... ...|... ......++++.+|.|+
T Consensus 1 Pp~~P~~l~~~~~~~~~sv~l~W~~~~~---~~i~~Y~v~~~~~~~~~--------~~~~~~~-~~~~~~~~~i~~L~p~ 68 (368)
T 1fnf_A 1 PLSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQ--------GNSLEEV-VHADQSSCTFDNLSPG 68 (368)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCS--------SCCEEEE-ECTTCCEEECCCCCTT
T ss_pred CCCCCcceEEEecCCCcEEEEEEeCCCC---CCceEEEEEEEECCCCC--------CceeEEE-ecCCcCEEEECCCCCC
Confidence 4789999999988876 59999999863 56899999998765431 0134433 3456788999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.++. ..+.... .++.++++...
T Consensus 69 t~Y~~~V~a~~~~g~s~~~~----~~~~~~~--------------------------------------~~p~~l~~~~~ 106 (368)
T 1fnf_A 69 LEYNVSVYTVKDDKESVPIS----DTIIPAV--------------------------------------PPPTDLRFTNI 106 (368)
T ss_dssp SCEEEEEEEEETTEECCCEE----EEECCCC--------------------------------------CCCEEEEEESC
T ss_pred CEEEEEEEEEcCCCccCcee----eeecCCC--------------------------------------cCCceeEEEEc
Confidence 99999999999988775431 1221111 12367899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++|.++.+.+|.|+|+..+....|....+ .....++.|.+|.|++.|.|+|+|.|..|.+.+.. ....
T Consensus 107 ~~~si~l~W~~p~~~~~~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~ 183 (368)
T 1fnf_A 107 GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQK 183 (368)
T ss_dssp CSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEeeCCCCCCCcEEEEEEEECCCCCccEEEEc--CCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE-eeec
Confidence 99999999999977889999999998876556665544 35778999999999999999999999999875532 2222
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+ +..+|.++++...+.+++.|+|++|. |.+.+|.|+|+..+ ........+....++++|.+|+|++.|.|
T Consensus 184 ~----~~~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 254 (368)
T 1fnf_A 184 T----GLDSPTGIDFSDITANSFTVHWIAPR-----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVV 254 (368)
T ss_dssp C----CCCCCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEE
T ss_pred C----CCCCCCccEEEEccCCEEEEEEeCCC-----CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEE
Confidence 2 23477899998888999999999972 67999999998865 33445566777889999999999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy574 715 SLAATNRAGTGPYSR 729 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~ 729 (977)
+|+|+|..|.|+++.
T Consensus 255 ~V~A~n~~g~~~~~~ 269 (368)
T 1fnf_A 255 SIVALNGREESPLLI 269 (368)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEeCCccCCccc
Confidence 999999999988764
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=248.34 Aligned_cols=239 Identities=16% Similarity=0.235 Sum_probs=188.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEecCcEEEEcCC---CCCCCeE--EEEEEEecCcee
Q psy574 15 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS---RKTDDGR--YQCVVKNVAGTR 87 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v---~~~D~G~--Y~C~a~n~~g~~ 87 (977)
..+.+|+.++|.|.+..+.|.+ .|.|+|||+.+.. ++.. .++.|.|..+ +.+|+|. |+|.+.|..|..
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~-~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~ 87 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTY-GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 87 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEE-CSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEee-CCCeEEEEeecccccccCCcceEEEEEecCCCCc
Confidence 4789999999999993337876 9999999999842 3333 3456777666 7888884 999999988864
Q ss_pred eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEE
Q psy574 88 ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 88 ~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
+..+.|.|...|.....+.+..+.+|+.+.|.|.+. |.+.|.| ++..+.... ..+.|.|..+..+|.|.|+
T Consensus 88 -~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~ 158 (265)
T 2oz4_A 88 -ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGRSFS 158 (265)
T ss_dssp -EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----SEECCEEECCGGGTTEEEE
T ss_pred -EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----CcEEEEEccccccCCceEE
Confidence 467888998644322234566788999999999998 8899999 777774332 3356889999999999999
Q ss_pred EEEEeCC-eeEE---EEEEEEEeeCCeEEec--CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAV-GKIS---ASATLTVQMAPIVRER--PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~-g~~~---~~~~L~V~~~p~~~~~--p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|.|.. |... ..+.|.|..+|.+... |.+..+.+|+.++|.|.+.|.|.+.+.|++++..+. .
T Consensus 159 C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~-----~----- 228 (265)
T 2oz4_A 159 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-----P----- 228 (265)
T ss_dssp EEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC-----C-----
T ss_pred EEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC-----C-----
Confidence 9998644 5544 7788999988887654 456789999999999999999999999999997321 0
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.| .+ ..++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 229 -----~g--~~--~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 229 -----IG--ES--VTVTRDLEGTYL-CRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp -----TT--SC--EECCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred -----CC--cE--EEeehhhCeEEE-EEEECCCCcEEEEEEEEEec
Confidence 13 22 247889999999 99999999999999999875
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=245.87 Aligned_cols=266 Identities=19% Similarity=0.262 Sum_probs=205.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCce-----EEEEEECCeeCC--------------CCceEEe--------ccceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVL-----TVHWKRLGSAMP--------------EDRMSVL--------PSRSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~-----~i~W~k~~~~l~--------------~~~~~~~--------~~~~L~ 154 (977)
++..|.++.+..|++++|.|.+.+.+.+ .+.|+|++.... ..++.+. .+.+|.
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 4556778888999999999999776654 599999975421 1233332 235799
Q ss_pred EccCccCCCeEEEEEEE-eCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeec
Q psy574 155 LSDVRLEDAGEYVCEAE-NAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~ 232 (977)
|.+++.+|+|.|+|.+. +..+..+..+.|.|..+|.+...+....+..++.+.+.|.+. +.|.+.+.|++++..+...
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~ 162 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence 99999999999999986 455677888999999999988888888888999999999874 7899999999998765321
Q ss_pred C---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE--EEEEEECCCCCCCCeEE-eCCCceeec
Q psy574 233 P---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR--ASLTVSGPDPNPPPVIL-FGPANQTLP 306 (977)
Q Consensus 233 ~---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~--~~l~V~~~~~~~pp~i~-~~p~~~~v~ 306 (977)
. ....+.+.+. +.|.|..+..+|.|.|+ |.|.|..+..... +.|.|.. +|.+. ..+....+.
T Consensus 163 ~~~~~~~~~~~~~~------s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~~~l~V~~-----~P~v~~~~~~~~~~~ 230 (313)
T 4fqp_A 163 SQVPGFLSGTVTVT------SLWILVPSSQVDGKNVT-CKVEHESFEKPQLLTVNLTVYY-----PPEVSISGYDNNWYL 230 (313)
T ss_dssp EEEECSSTTCEEEE------EEEEECCCGGGTTCEEE-EEEECTTSSSCEEEEEECCBCE-----EEEEEEECCCSCEET
T ss_pred ceeeeecccccccc------eeeeecccccccCeeEE-EEEEccCcCccceeeeeccccc-----CCccccccccceeec
Confidence 1 0111122221 37899999999999999 9999988765444 4455544 56654 445556677
Q ss_pred CCCcEEEEEEEcc--Cc-eEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 307 LRSEARLRCQVRG--EG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 307 ~g~~~~L~C~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
.|+.++|.|.+.+ .| .|.|+++|..+.... ....++|.|.++...|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 231 ~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 231 GQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp TCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 8899999999999 45 599999999875432 3346789999999999999999999999999999999998653
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=256.46 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=204.2
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-.+|.|...|.++.+.+|++++|.|.+ .+. |.|++++... .++... ..+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 71 (292)
T 4dkd_C 2 GSIPVIEPSVPELVVKPGATVTLRCVG-NGS----VEWDGPPSPH-----WTLYSDGSSSILSTNNATFQNTGTYRCTEP 71 (292)
T ss_dssp --CCEEESCCSSCEECTTCCEEEEEEC-SSC----CCBCCCCCSS-----CEECCBTTEEEEEESSCCGGGCSCEEECCC
T ss_pred CCCceecCCCCeEEEcCCCcEEEEEcC-CCc----eEEccCCCCc-----eEEeccCceEEEEEcccccccCEEEEEEEc
Confidence 356889999999999999999999998 442 9999765321 111111 12489999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCe-EEeCCCceEEeCCCeEEEEEEecccCc--eEEEEEEC-CeeCCC-CceEEeccceEEEc
Q psy574 82 NVAGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAV--LTVHWKRL-GSAMPE-DRMSVLPSRSLQLS 156 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~--~~i~W~k~-~~~l~~-~~~~~~~~~~L~I~ 156 (977)
|..+.. +..+.|.|..+|. +...+.+..+.+|+.+.|.|.+.+ |. +.+.|+++ +..+.. .++....++.|.|.
T Consensus 72 n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (292)
T 4dkd_C 72 GDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIH 149 (292)
T ss_dssp C----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEET
T ss_pred cCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEEC
Confidence 887654 6778889988775 466778889999999999999987 44 78999998 444443 34444566779999
Q ss_pred cCccCCCeEEEEEEEeCCeeE-EEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKI-SASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.|.|..+.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|. ..+.|++++..+.
T Consensus 150 ~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~ 229 (292)
T 4dkd_C 150 RAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA 229 (292)
T ss_dssp TCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred CCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence 999999999999999887754 4578899986 899999998888889999999999998765 4688888887553
Q ss_pred ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
... ..++..... ...+.|.|.++..+|+|.|+ |.|.|..|....++.|.|...
T Consensus 230 ~~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 230 IPQ---QSDFHNNRY-QKVLTLNLDQVDFQHAGNYS-CVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp CCB---EEEEETTEE-EEEEEEEESSCCTTSCEEEE-EEEECSSCEEEEEEEECC---
T ss_pred cCc---cceecccee-eeEEEEEECccChhcCeEEE-EEEecCCCCceeEEEEEEeeC
Confidence 211 111110000 01248999999999999999 999999999999999988873
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=268.17 Aligned_cols=275 Identities=20% Similarity=0.251 Sum_probs=219.8
Q ss_pred EEEcCCeEEeCCCceEEeCCCeEEEEEEec-------ccCceEEEEEECCee--CCCC---ceEEeccceEEEccCccCC
Q psy574 95 RVLVKPYIIRGPKDTTVSASSIIVFECSVG-------GDAVLTVHWKRLGSA--MPED---RMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 95 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-------g~p~~~i~W~k~~~~--l~~~---~~~~~~~~~L~I~~v~~~D 162 (977)
.....|.+...|.+..+.+|+++.|.|.+. +.|.+.|.|+|++.. +... ++. ..+++|.|.+++.+|
T Consensus 14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D 92 (339)
T 3o4o_C 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQED 92 (339)
T ss_dssp ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTC
T ss_pred cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE-eeCCeEEECCCCccc
Confidence 344568899999999999999999999997 889999999999987 3332 332 467899999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeeCCeEE--ecCCCcEEeeCCeEEEEEE-----EecCCCCeEEEEEcCeeeeecCCC
Q psy574 163 AGEYVCEAENAVGKISASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCG-----IEGSPPPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~--~~p~~~~v~~G~~v~L~C~-----~~g~p~~~i~W~~~g~~~~~~~~~ 235 (977)
+|.|+|.+.|..|.....+.|.|..++... .......+.+|+.+.|.|. +.+.|.+.+.|++++..+..
T Consensus 93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~---- 168 (339)
T 3o4o_C 93 SGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK---- 168 (339)
T ss_dssp CEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT----
T ss_pred CEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC----
Confidence 999999999999988899999998765432 2223347889999999999 78899999999999987642
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCC----ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g----~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
...++.... +...|.|.+++.+|+|.|+ |.|.|..| .....+.|.|.......+|.+...+....+..|+.+
T Consensus 169 ~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v 244 (339)
T 3o4o_C 169 DNEKFLSVR---GTTHLLVHDVALEDAGYYR-CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244 (339)
T ss_dssp TCSSEEECT---TSSEEEESSCCGGGCEEEE-EEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCC
T ss_pred CCceeEEcC---CcceEEEcccCHhhCeEEE-EEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCE
Confidence 223444432 3348999999999999999 99999887 356678888887655567888888888889999999
Q ss_pred EEEEEE---cc---CceEEEEECCEEcCC---------CCcEEEecCc------eEEEeccCCCCC-eEEEEEEEcCCCc
Q psy574 312 RLRCQV---RG---EGSVQWWRGEREVGS---------GPRVNVTGDG------SLVLTDVTKEDS-GEYTCVVKSPHGS 369 (977)
Q Consensus 312 ~L~C~~---~~---~p~i~W~~~g~~l~~---------~~~~~~~~~~------sl~I~~v~~~d~-G~Y~C~a~n~~G~ 369 (977)
.|.|.+ .+ .+.+.|+++|..+.. ..++....++ +|.|.++...|. |.|+|.|.|..|.
T Consensus 245 ~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~ 324 (339)
T 3o4o_C 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF 324 (339)
T ss_dssp CCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEE
T ss_pred EEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCc
Confidence 999999 77 457999999986532 2334444455 799999999997 9999999999998
Q ss_pred eEEEEEEEE
Q psy574 370 ASWSASLRF 378 (977)
Q Consensus 370 ~~~s~~l~v 378 (977)
.+..+.+.+
T Consensus 325 ~~~~~~~~~ 333 (339)
T 3o4o_C 325 QTLRTTVKE 333 (339)
T ss_dssp ECCBCCCCC
T ss_pred eEEEEEhhH
Confidence 876665544
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=247.83 Aligned_cols=262 Identities=13% Similarity=0.196 Sum_probs=185.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
|.|...+.++.+.+|++++|.|.+ .+. |.|+|++..+. .++....+ +.|.|.+++.+|+|.|+|.|.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 71 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSG-SAP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEE-SSC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECC
T ss_pred CeecCCCCeEEEeCCCcEEEEEec-cce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEc
Confidence 456666777899999999999998 443 99999999882 34444433 479999999999999999999
Q ss_pred ecCceeeeEeEEEEEEc--CCe-EEeCCCc---eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 82 NVAGTRESTDAVLRVLV--KPY-IIRGPKD---TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~--~P~-~~~~p~~---~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|..|........+.|.. +.. +...... ..+.+|+++.|.|.+. .|.+.+.|++++....... .......+.
T Consensus 72 n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~-~~~~~~~~~- 148 (289)
T 3mjg_X 72 DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV-PYDHQRGFS- 148 (289)
T ss_dssp C------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC-CEETTTEEE-
T ss_pred ccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce-eecCCcCee-
Confidence 98875333333444443 222 1111212 6789999999999998 6778899999753332211 111112222
Q ss_pred ccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee--CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeec
Q psy574 156 SDVRLEDAGEYVCEAENAVGKI-SASATLTVQM--APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~--~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~ 232 (977)
...|+|.|+|.|.|..+.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++.....
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~- 224 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR- 224 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSC-
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCC-
Confidence 3579999999999877654 3446677764 77777777778899999999999999999999999987754311
Q ss_pred CCCccccEEEEEc---cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 233 PGDRVDNIQAEIT---SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 233 ~~~~~~~~~~~~~---~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.......... ....+.|.|.+++.+|+|.|+ |.|.|..|....++.|.|..
T Consensus 225 ---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 225 ---LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYT-CNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp ---CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEE-EEEEETTTTEEEEEEEEEEE
T ss_pred ---cccccccccCCcceEEEEEEEEcccChhhCcEEE-EEeecCCCCceeEEEEEEEE
Confidence 0111111100 112359999999999999999 99999999999999999987
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=251.86 Aligned_cols=262 Identities=15% Similarity=0.256 Sum_probs=200.0
Q ss_pred ceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
...+.+|+.+.|.|.. .+.|.+.|.|+|++..+. ..++.+..+ ..|.|.+++.+|+|.|+|.|.|..|... .+.
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~ 88 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL 88 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence 4578899999999998 467999999999999987 456655433 5899999999999999999999887543 566
Q ss_pred EEEee------------CCeEEecCC-CcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEEc-cC
Q psy574 183 LTVQM------------APIVRERPS-DLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT-SD 247 (977)
Q Consensus 183 L~V~~------------~p~~~~~p~-~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~-~~ 247 (977)
|.|.. +|.+...+. ...+.+|+.++|.|.+. +.|.+.+.|++++..+. ...++.+... ..
T Consensus 89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~-----~~~~~~~~~~~~~ 163 (312)
T 2y23_A 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-----EGPKYKMHIDRNT 163 (312)
T ss_dssp ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC-----SSSSCEEEEETTT
T ss_pred EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe-----eCCcEEEEEccCC
Confidence 77653 666555443 77899999999999998 89999999999998874 2345555443 24
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC----------------CCCCCCeEEeCCCceeecCCCcE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP----------------DPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~----------------~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
+...|.|.+++.+|+|.|+ |.|.+..... ...+.+... ....+|.+.... ...+..|+.+
T Consensus 164 ~~~~L~i~~~~~~d~G~Y~-C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~ 239 (312)
T 2y23_A 164 GIIEMFMEKLQDEDEGTYT-FQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNV 239 (312)
T ss_dssp TEEEEEESCCCGGGCEEEE-EEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEE
T ss_pred CEEEEEEccCCcccCEeEE-EEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEE
Confidence 5567999999999999999 9998654433 333333110 001135554333 3678899999
Q ss_pred EEEEEEcc--Cc-eEEEEECCEEcCCCCcEEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 312 RLRCQVRG--EG-SVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 312 ~L~C~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.|.|.+.+ .+ .+.|+++|..+....++.+... ..|.|.++...|+|.|+|.|.|..|....++.|.++
T Consensus 240 ~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 240 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 99999999 55 8999999998875555554433 579999999999999999999999999988888653
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=248.31 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=205.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEeccc----CceEEEEEECCee---------------C---CCCceEEe----ccceE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGD----AVLTVHWKRLGSA---------------M---PEDRMSVL----PSRSL 153 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~----p~~~i~W~k~~~~---------------l---~~~~~~~~----~~~~L 153 (977)
+.++..|.++.+.+|+++.|.|.+.+. +.+.+.|+|++.. + ..+|+.+. .+.+|
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 345566778899999999999999776 5678999996411 1 12455543 35789
Q ss_pred EEccCccCCCeEEEEE-EEeCCeeEEEEEEEEEeeCCeEEe--cCCCcEEeeC---CeEEEEEE-EecCCCCeEEEEEcC
Q psy574 154 QLSDVRLEDAGEYVCE-AENAVGKISASATLTVQMAPIVRE--RPSDLRLEVG---RDAVFLCG-IEGSPPPSTFWMLEG 226 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~-a~n~~g~~~~~~~L~V~~~p~~~~--~p~~~~v~~G---~~v~L~C~-~~g~p~~~i~W~~~g 226 (977)
.|.+++.+|+|.|+|. +.+..+.....+.|.|..+|.+.. .+....+.+| +.++|.|. +.+.|.+.+.|++++
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~ 174 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence 9999999999999998 567778888899999999887744 4566678888 88999997 889999999999964
Q ss_pred eeeee--cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEE-eCCCce
Q psy574 227 NRSLI--YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL-FGPANQ 303 (977)
Q Consensus 227 ~~~~~--~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~-~~p~~~ 303 (977)
..... ......+.+.+. +.|.|..+..+|+|.|+ |.|.|..|.....+.|.|.. +|.+. ..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~l~V~~-----~P~~~~~~~~~~ 242 (331)
T 3u83_A 175 KGEAEYQEIRNPNGTVTVI------SRYRLVPSREAHQQSLA-CIVNYHMDRFKESLTLNVQY-----EPEVTIEGFDGN 242 (331)
T ss_dssp CCEEEEEEEECTTSCEEEE------EEEEECCCGGGTTCEEE-EEEEETTEEEEEEEECCEEE-----EEEEEEECCCSC
T ss_pred CCccccceeECCCCcEEEE------EEEEEEeccccCCCEEE-EEEecCCCcceeeEEEEEec-----CCeEEEecCCCc
Confidence 32211 111112222222 37899999999999999 99999999888888888887 45554 455566
Q ss_pred eecCCCcEEEEEEEcc--Cce-EEEEECCEEcCCCCcEEEecCceEEEe-ccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 304 TLPLRSEARLRCQVRG--EGS-VQWWRGEREVGSGPRVNVTGDGSLVLT-DVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 304 ~v~~g~~~~L~C~~~~--~p~-i~W~~~g~~l~~~~~~~~~~~~sl~I~-~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.+..|+.+.|.|.+.+ .|. +.|++++..+.... ...+++|.|. ++...|.|.|+|.|.|..|..+.++.|.|.
T Consensus 243 ~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV---EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp CBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred eEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc---eecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 6889999999999998 566 99999999876542 2356789999 899999999999999999999999999887
Q ss_pred CC
Q psy574 380 SP 381 (977)
Q Consensus 380 ~~ 381 (977)
..
T Consensus 320 ~~ 321 (331)
T 3u83_A 320 EA 321 (331)
T ss_dssp C-
T ss_pred cc
Confidence 54
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=247.17 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=206.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++....... .......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 77 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD-PESPGSTLTTRNATFKNTGTYRCTELEDPMAG 77 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEEC-CCSSCCEEEESSCCGGGCEEEEEECCC-----
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEe-ccCCccEEEEeeeccccCEEEEEEEeccCCcc
Confidence 3566777778889999999999999976 499998865432100 01145789999999999999999999988888
Q ss_pred EEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 178 SASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 178 ~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
+..+.|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++.+.... ....++.+.. .+ .|.|.
T Consensus 78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~----~~~~~~~~~~--~~--~L~i~ 149 (289)
T 3ejj_X 78 STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV----LRKTVYFFSP--WR--GFIIR 149 (289)
T ss_dssp CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEEC----CTTCCEEEET--TT--EEEES
T ss_pred eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeec----CCCccEEECC--CC--CEEEe
Confidence 8899999998776 56677778999999999999999877765 99987544332 1234444432 24 89999
Q ss_pred ecccCCCCeEEEEEEE-cCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEE
Q psy574 256 NVSRTAAPLIILCLGV-NAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGERE 331 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~-n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~ 331 (977)
+++.+|+|.|+ |.|. +..+.....+.|.|.... ..+|.+...+....+..|+.+.|.|.+.+ .+.+.|++++..
T Consensus 150 ~v~~~d~G~Y~-C~a~~~~~~~~~~~~~l~V~~~~-~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~ 227 (289)
T 3ejj_X 150 KAKVLDSNTYV-CKTMVNGRESTSTGIWLKVNRVH-PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTK 227 (289)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEESSC-CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEE
T ss_pred ecccccCEEEE-EEEEeCCCccccccEEEEEEECC-CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEE
Confidence 99999999999 9999 555555667788887521 23778888888888889999999999987 568999999998
Q ss_pred cCCCCcEEE-----ecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 332 VGSGPRVNV-----TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 332 l~~~~~~~~-----~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
+........ ...+.|.|.++...|.|.|+|.|.|..|....++.|.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp CCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred eeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 865422221 2245799999999999999999999999999999998764
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=255.09 Aligned_cols=258 Identities=15% Similarity=0.198 Sum_probs=197.9
Q ss_pred CceEEeCCCeEEEEEEeccc---------CceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCe-EEEEEEEeCCe
Q psy574 107 KDTTVSASSIIVFECSVGGD---------AVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG 175 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~---------p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 175 (977)
.+..+.+|+++.|.|.+.+. |.+.|.|+|++..+.. .+. ..+++|.|.+++.+|+| .|+|.|.|..|
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 45578999999999999774 6689999999987653 222 45789999999999999 99999999887
Q ss_pred eEEEEEE-EEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEE
Q psy574 176 KISASAT-LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253 (977)
Q Consensus 176 ~~~~~~~-L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~ 253 (977)
....... +.+..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+|++..+.. ...++... .+ .|.
T Consensus 115 ~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~----~~~~~~~~---~~--~L~ 185 (329)
T 3oq3_B 115 DCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII----DGTKYSQS---GQ--NLI 185 (329)
T ss_dssp CEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC----SSSSEEEE---TT--EEE
T ss_pred ceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC----CCceEecC---CC--EEE
Confidence 6444433 3334555544444444567899999999999999 899999999987632 23344443 24 999
Q ss_pred EeecccCCCCeEEEEEEEcC--CCceeEE----EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C----c-
Q psy574 254 IQNVSRTAAPLIILCLGVNA--AGSDLAR----ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E----G- 321 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~--~g~~~~~----~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~----p- 321 (977)
|.+++.+|+|.|+ |.|.|. .|..... +.|.|...+....|.+ .|....+..|+.+.|.|.+.+ + +
T Consensus 186 I~~v~~~D~G~Y~-C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i 262 (329)
T 3oq3_B 186 IHNPELEDSGRYD-CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEPANITCTAVSTSLLVDDV 262 (329)
T ss_dssp ECSCCGGGCEEEE-EEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCC
T ss_pred EeecChhhCEEEE-EEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCCEEEEEEEEECCCCCCCc
Confidence 9999999999999 999987 6554333 6788877422212333 677788999999999999999 3 3
Q ss_pred eEEEEECCEEc-CCCCcEEEe-------cCceEEEeccCCCCCe-EEEEEEEcCCCceEEEEEEEE
Q psy574 322 SVQWWRGEREV-GSGPRVNVT-------GDGSLVLTDVTKEDSG-EYTCVVKSPHGSASWSASLRF 378 (977)
Q Consensus 322 ~i~W~~~g~~l-~~~~~~~~~-------~~~sl~I~~v~~~d~G-~Y~C~a~n~~G~~~~s~~l~v 378 (977)
.+.|+++|..+ ....+.... ..+.|.|.++...|.| .|+|.|.|..|....++.|.|
T Consensus 263 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 78999999874 333333222 3457999999999999 999999999999988888876
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=238.76 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=197.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|.+..+.+|+.+.|.|.+.+.|.+ .+.|+|++..+.. .+..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s- 73 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT------STPSYRITSASVNDSGEYRCQRGLSGRS- 73 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEESSSCCC-
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec------cCCeEEEecCCcccCeEEEEEEecCCcc-
Confidence 4788888999999999999999999888887 9999999998865 3578999999999999999999886543
Q ss_pred EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEee
Q psy574 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256 (977)
Q Consensus 178 ~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~ 256 (977)
..+.|.|..++. ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... . ....|.|.+
T Consensus 74 -~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----------~---~~~~l~i~~ 137 (262)
T 3rjd_A 74 -DPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----------H---WNSNLTILK 137 (262)
T ss_dssp -CCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------E---ECCCEEESS
T ss_pred -ccEEEEEeccce-EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----------C---CCCeEEEEE
Confidence 466777876654 445567788999999999999 77888899999999876321 1 123899999
Q ss_pred cccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C--c----eEEEEECC
Q psy574 257 VSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E--G----SVQWWRGE 329 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~--p----~i~W~~~g 329 (977)
++.+|+|.|+ |.|.|..+.....+.|.|... ..+|.+...+ ...+..|+.+.|.|.+.+ + + .+.|++++
T Consensus 138 ~~~~d~G~Y~-C~~~n~~~~~~~~~~l~V~~~--~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~ 213 (262)
T 3rjd_A 138 TNISHNGTYH-CSGMGKHRYTSAGISVTVKEL--FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS 213 (262)
T ss_dssp CCGGGCEEEE-EEEESSSEEEEECEEEEEECS--SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETT
T ss_pred CChhhCEEEE-EEEeCCCCccccceEEEeccC--CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCC
Confidence 9999999999 999999987778888888863 2256666665 667889999999999998 2 3 37899999
Q ss_pred EEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 330 REVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 330 ~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
..+.. ....+.|.|.++...|+|.|+|.|.|..|..
T Consensus 214 ~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 214 KTLRG-----RNTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp EEEEE-----EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEecc-----cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 87642 1345679999999999999999999999975
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=255.37 Aligned_cols=266 Identities=14% Similarity=0.177 Sum_probs=186.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|. ..+.+|++++|.|.+ .+. .+.+.|+|||..+... ......++.|.|.+++.+|+|.|+|.|.|.
T Consensus 23 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~~~-~~~~~W~k~g~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 96 (316)
T 3vh8_G 23 DKPFLSAWPS-AVVPRGGHVTLRCHY-RHR-FNNFMLYKEDRIHIPI---FHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96 (316)
T ss_dssp -CCEEEEESC-SEEETTSCEEEEEEB-TTB-CCSEEEEESSCSSSCH---HHHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred CCCEeeccCC-CccCCCCCEEEEEEc-cCC-CceEEEEeCCCcccee---ecCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence 3678888887 678999999999999 455 6789999999886321 111123678999999999999999999864
Q ss_pred Cc----eeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--E---eccc
Q psy574 84 AG----TRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--V---LPSR 151 (977)
Q Consensus 84 ~g----~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~---~~~~ 151 (977)
.+ ...+..+.|.|.. +|.+...|... +.+|++++|.|.+.+ +.+.+.|+|++..+...... . ....
T Consensus 97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~ 174 (316)
T 3vh8_G 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKA 174 (316)
T ss_dssp SSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEE
T ss_pred CCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceE
Confidence 32 2345667788864 45666666554 889999999999954 55689999999877542211 1 1346
Q ss_pred eEEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|. .+|.+...+.. .+.+|+.++|.|.+. .+.+.+.|+
T Consensus 175 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~ 252 (316)
T 3vh8_G 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLS 252 (316)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEE
T ss_pred EEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEE
Confidence 8999999999999999999998763 2556677776 35666666543 678999999999997 477899999
Q ss_pred EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc-----eeEEEEEEEEC
Q psy574 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS-----DLARASLTVSG 287 (977)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~-----~~~~~~l~V~~ 287 (977)
|+|..+... ..............|.|.+++ |+|.|+ |.|.|..+. .+....|.|.+
T Consensus 253 k~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~--D~G~Y~-C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 253 REGGAHERR-----LPAVRKVNRTFQADFPLGPAT--HGGTYR-CFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp ETTSSCCEE-----EECEECTTSCEEEEEECC-------CEEE-EEEEBTTBTTEECCCCCCEEC----
T ss_pred ECCCcCCCc-----eeceeccCCceeEEEEcCCcC--CCEEEE-EEeecCCCchhccCCCCcEEEEEeC
Confidence 999765321 000000010112489999999 999999 999997764 23445566554
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=297.37 Aligned_cols=303 Identities=17% Similarity=0.224 Sum_probs=223.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCC---CCCCCCcccEEEeceec----------
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS---PSGDTATATWVRVATNV---------- 462 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~---~~~~~~~~~w~~~~~~~---------- 462 (977)
.....|.++.+..++.+++.|+|.+|...+++.+.+|.|+|+........ -....+...|.......
T Consensus 467 ~C~~~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~ 546 (897)
T 2dtg_E 467 SCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQ 546 (897)
T ss_dssp CCSCCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSS
T ss_pred ccccceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccc
Confidence 45567889999999999999999999865667899999999765311000 00001223676544221
Q ss_pred CcCeEEEEccCCCCeEEEEEEE-EcCCCC----CCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhh
Q psy574 463 PSPILTVTNLTVGLTYTFLVRA-LNSHGL----SAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQ 537 (977)
Q Consensus 463 ~~~~~~i~~L~p~t~Y~~~V~a-~n~~G~----s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~ 537 (977)
...++++.+|+|++.|.|+|+| .|..|. +.+|.... +++ ++.+
T Consensus 547 ~~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~-~~T----~~~~--------------------------- 594 (897)
T 2dtg_E 547 NHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY-VQT----DATN--------------------------- 594 (897)
T ss_dssp SCCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBC-CBC----CCCC---------------------------
T ss_pred cccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEE-EEC----CCCC---------------------------
Confidence 2578999999999999999999 999987 44443322 222 1111
Q ss_pred cccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCC-----------------------------
Q psy574 538 HLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA----------------------------- 586 (977)
Q Consensus 538 ~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~----------------------------- 586 (977)
|.+|.++++...++++|.|+|++| .++.|.+|+|+|+....+.
T Consensus 595 ------Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~ 668 (897)
T 2dtg_E 595 ------PSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQ 668 (897)
T ss_dssp ------CCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC-------------
T ss_pred ------CcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEEEECCCCccceecccccCCCcCCccccceeeeccccc
Confidence 223478999999999999999999 6788999999998754310
Q ss_pred -----------------------------------CceEE-----EE-------------------------eecCccce
Q psy574 587 -----------------------------------SVAML-----TV-------------------------LHAGEASG 601 (977)
Q Consensus 587 -----------------------------------~~~~~-----~~-------------------------~~~~~~~~ 601 (977)
.|... .. ......++
T Consensus 669 ~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~ 748 (897)
T 2dtg_E 669 KHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKES 748 (897)
T ss_dssp -------------------------------------------------------------------CCSCSCEECSCSE
T ss_pred CcccccccccCCCccCCcCcccchhhhhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceE
Confidence 11100 00 01124578
Q ss_pred EEECCCCCCcEEEEEEEEeecceeCCC---CCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 602 FLVTGLAHYSRYEFFLVPFFGSVDGKP---SNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 602 ~~i~~L~p~t~Y~~~V~a~n~~g~g~~---s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
++|.+|+|++.|.|+|+|+|..|.+.. +..+.++|.+. .|+.+|.++++...+.++|.|+|++| ...||.|.+|
T Consensus 749 ~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P--~~~nG~I~~Y 826 (897)
T 2dtg_E 749 LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEP--KEPNGLIVLY 826 (897)
T ss_dssp EEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCCCCCCCCCCCCCCCCSSSSSCCCCCCCCC--CSCSSCEEEE
T ss_pred EEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEeccCccCCCCCCcceEEEeCCCCEEEEEECCC--CCCCCCEEEE
Confidence 999999999999999999999998764 56788888863 33457889988888889999999999 6789999999
Q ss_pred EEEEEecCCcceEE-E--EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 678 QIIVGGGNNSALIN-M--TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 678 ~v~~~~~~~~~~~~-~--~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+..+...... . ......++++|.+|+|+ +|.|+|+|+|.+|.|++|+++.|+|.+..
T Consensus 827 ~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p 890 (897)
T 2dtg_E 827 EVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYL 890 (897)
T ss_dssp CCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCCCCC
T ss_pred EEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCC
Confidence 99998854321111 1 11346788999999999 69999999999999999999999998765
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=254.40 Aligned_cols=266 Identities=14% Similarity=0.157 Sum_probs=205.0
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCC---------------CCceEEe------ccceEEEccCccCCCeEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVL------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---------------~~~~~~~------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+.+.+|+++.|.|.+.+.|.+.|.|+|++..+. ..|+.+. .+.+|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 467899999999999999999999999985321 1233332 2557999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|.|.|.. ..+.|.|.. +...| ...+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 84 C~~~n~~----~~~~l~V~~---~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~---------------- 139 (363)
T 1wio_A 84 CEVEDQK----EEVQLLVFG---LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------- 139 (363)
T ss_dssp EEETTEE----EEEEEEEEE---EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE----------------
T ss_pred EEEEECC----CcEEEEEEe---CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc----------------
Confidence 9998864 356677764 33333 34788999999999999999999999999865420
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-------C
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-------E 320 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-------~ 320 (977)
+...|.|.+++.+|+|.|+ |.|.|..+.....+.|.|... |.. +....+..|+.+.|.|.+.+ .
T Consensus 140 ~~~~L~i~~v~~~d~G~Y~-C~a~~~~~~~~~~~~l~v~~~-----p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~ 210 (363)
T 1wio_A 140 GGKTLSVSQLELQDSGTWT-CTVLQNQKKVEFKIDIVVLAF-----QKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGS 210 (363)
T ss_dssp ESSEEEECSBCGGGCEECE-EEEEETTEEEEECCEECEECC-----SCS---EEEEEEETBCCEEEECCCCCCCCSSCEE
T ss_pred cceEEEEeeCChhcCCEEE-EEEecCCCeEEEEEEEEEecC-----CCC---CCceEEecCCEEEEEEEEecccccCCCc
Confidence 2239999999999999999 999998777777777777752 221 24566888999999998876 4
Q ss_pred ceEEEEECCEEcCC--------CCcEEEe-----------c--CceEEEeccCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy574 321 GSVQWWRGEREVGS--------GPRVNVT-----------G--DGSLVLTDVTKEDSGEYTCVVKSP--HGSASWSASLR 377 (977)
Q Consensus 321 p~i~W~~~g~~l~~--------~~~~~~~-----------~--~~sl~I~~v~~~d~G~Y~C~a~n~--~G~~~~s~~l~ 377 (977)
|.+.|+++|..+.. ..++.+. . ..+|.|.++...|+|.|+|.|.|. .|.....+.|.
T Consensus 211 p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~ 290 (363)
T 1wio_A 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290 (363)
T ss_dssp EEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEE
T ss_pred eeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEE
Confidence 68999999988765 4455442 2 338999999999999999999999 99988888898
Q ss_pred EECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCC--ceEEEEEcCCC
Q psy574 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN--GLTLAWSRNNQ 423 (977)
Q Consensus 378 v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~--sv~lsW~~p~~ 423 (977)
|.. .++.+..+.|...... .+.+.|..+..
T Consensus 291 V~~----------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~ 322 (363)
T 1wio_A 291 VMR----------------ATQLQKNLTCEVWGPTSPKLMLSLKLENK 322 (363)
T ss_dssp EEE----------------ECCCSSSEEEEEESSCCTTCCEEEECSSS
T ss_pred EEE----------------ecCCCeeEEEEEccccCCCccEEEEeCCC
Confidence 872 2355666666655443 34588887654
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=243.95 Aligned_cols=281 Identities=15% Similarity=0.137 Sum_probs=197.0
Q ss_pred CCceeecCCCcEEEEEEEccC-------ceEEEEECCEEcCCCCcEEEecC----ceEEEeccCCCCCeEEEEEEEcCCC
Q psy574 300 PANQTLPLRSEARLRCQVRGE-------GSVQWWRGEREVGSGPRVNVTGD----GSLVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~~-------p~i~W~~~g~~l~~~~~~~~~~~----~sl~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
|.+..+..|++++|.|.+.+. +.|.|++||..+... +.....+ +.|+|.++...|+|.|+|.+.+..+
T Consensus 7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~ 85 (313)
T 2d9q_B 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL 85 (313)
T ss_dssp ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence 346778999999999999983 679999999977543 2211122 4699999999999999999976555
Q ss_pred ceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeC-CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCC
Q psy574 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT-ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447 (977)
Q Consensus 369 ~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~-~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~ 447 (977)
.....+.|.+. .+|++|.++.+.... .++++|+|.++.+ ++. ...|.|+|+..... |.
T Consensus 86 ~~~~~~~l~v~----------------~~P~~P~~l~c~~~~~~~~~~~~W~~~~~-~~~-~~~Y~l~~~~~~~~---~~ 144 (313)
T 2d9q_B 86 QILDQVELRAG----------------YPPAIPHNLSCLMNLTTSSLICQWEPGPE-THL-PTSFTLKSFKSRGN---CQ 144 (313)
T ss_dssp EEEEEEEEEEC----------------CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCTT---SC
T ss_pred eeEEEEEEccC----------------CCCCCCccceeeECCCCccEEEEecCCCC-CCC-ceeEEEEEEecCCC---cc
Confidence 44455666664 458899999888774 6899999999887 333 56799999865422 11
Q ss_pred CCCCcccEEEeceecCcCeEEEE--ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCC
Q psy574 448 GDTATATWVRVATNVPSPILTVT--NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPD 525 (977)
Q Consensus 448 ~~~~~~~w~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~ 525 (977)
.....|..+.......++.+. +|.+++.|.|+|.|.|..|.+.++. +.. .......|. |
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~----~~~-~~~~~~~p~---------p--- 205 (313)
T 2d9q_B 145 --TQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ----LCL-DPMDVVKLE---------P--- 205 (313)
T ss_dssp --SCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCC----EEE-CGGGGEECC---------C---
T ss_pred --cCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCcc----EEE-ehhheeccC---------c---
Confidence 011256555432333456665 5999999999999999999864322 112 111111122 2
Q ss_pred CCCcchHHHHhhcccccCCceEEEEEeeEe------CCCeEEEEEEec-C-CCccceEEEEEEecCCCCCceEEEEeecC
Q psy574 526 EGRGESLRRARQHLQEGGGSLIELTEVKPM------TSTSVKLTWEIL-N-TDYIEGVYIYSRGLDPPASVAMLTVLHAG 597 (977)
Q Consensus 526 ~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~------~~tsv~lsW~~p-~-~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~ 597 (977)
|.++++... .+++|.|+|++| . +..+.+|+|+|+.......|....... .
T Consensus 206 ---------------------P~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~-~ 263 (313)
T 2d9q_B 206 ---------------------PMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLP-L 263 (313)
T ss_dssp ---------------------CEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEEC-S
T ss_pred ---------------------CceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEccCCCCCCcEEccccc-C
Confidence 266777765 578999999998 3 344579999999433357888765433 4
Q ss_pred ccceEEECCCCCCcEEEEEEEEeecceeCC---CCCceEEeccCCCCCC
Q psy574 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGK---PSNLRAVRTLECEPSG 643 (977)
Q Consensus 598 ~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~---~s~~~~~~T~~~~P~~ 643 (977)
..+.+.|.+|+|++.|.|+|+|.|..|.|. +|..+.++|.+++|++
T Consensus 264 ~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~ 312 (313)
T 2d9q_B 264 EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312 (313)
T ss_dssp CEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred cceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence 567899999999999999999999987775 6678899999988863
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=256.40 Aligned_cols=264 Identities=18% Similarity=0.209 Sum_probs=172.3
Q ss_pred CCceEEeCCCeEEEEEEecccCc-----------eEEEEEECCee------CC---CCceEEeccceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAV-----------LTVHWKRLGSA------MP---EDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~-----------~~i~W~k~~~~------l~---~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
..++.+.+|+++.|.|.+.+.|. +.|.|+|++.. +. ........++.|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 46678999999999999987554 89999999842 21 111122356789999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeeCCeEEe----cCCCcEEeeCCeEEEEEEE-----ecCCCCeEEEEEcCeeeeecCCCc
Q psy574 166 YVCEAENAVGKISASATLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGI-----EGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 166 Y~C~a~n~~g~~~~~~~L~V~~~p~~~~----~p~~~~v~~G~~v~L~C~~-----~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
|+|.|.|..+.....+.|.|..++.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|+|++..+. .
T Consensus 94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~-----~ 168 (349)
T 4dep_C 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ-----N 168 (349)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC-----S
T ss_pred EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC-----C
Confidence 9999999999888899999987654322 2335578899999999985 778999999999998762 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC-Cce---eEEEEEEEECCCC-CCCCeEEeCCCce--eecCCC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA-GSD---LARASLTVSGPDP-NPPPVILFGPANQ--TLPLRS 309 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~-g~~---~~~~~l~V~~~~~-~~pp~i~~~p~~~--~v~~g~ 309 (977)
..++... + ..|.|.+++.+|+|.|+ |.|.|.. |.. .....|.|..... ..+|.+..++... .+..|+
T Consensus 169 ~~~~~~~----~-~~L~i~~v~~~d~G~Y~-C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~ 242 (349)
T 4dep_C 169 FNNVIPE----G-MNLSFLIALISNNGNYT-CVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGE 242 (349)
T ss_dssp CSSEEEE----T-TEEEEESCCGGGCEEEE-EEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------
T ss_pred ccceeec----C-CEEEEeeeeecCCcEEE-EEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCC
Confidence 1233222 1 38999999999999999 9999987 443 4555666665321 1256666555443 788999
Q ss_pred cEEEEEEEc----c--CceEEEEECCEEcCC-CCcEEEe------------cCceEEEeccCCCCC-eEEEEEEEcCCCc
Q psy574 310 EARLRCQVR----G--EGSVQWWRGEREVGS-GPRVNVT------------GDGSLVLTDVTKEDS-GEYTCVVKSPHGS 369 (977)
Q Consensus 310 ~~~L~C~~~----~--~p~i~W~~~g~~l~~-~~~~~~~------------~~~sl~I~~v~~~d~-G~Y~C~a~n~~G~ 369 (977)
.+.|.|.+. + .|.+.|+++|..+.. ..++.+. ...+|.|.++...|. |.|+|.|.|..|.
T Consensus 243 ~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~ 322 (349)
T 4dep_C 243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE 322 (349)
T ss_dssp --CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCE
T ss_pred cEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCc
Confidence 999999999 4 578999999988765 2222211 123499999999999 9999999999999
Q ss_pred eEEEEEEEEEC
Q psy574 370 ASWSASLRFES 380 (977)
Q Consensus 370 ~~~s~~l~v~~ 380 (977)
...++.|.|..
T Consensus 323 ~~~~~~l~v~~ 333 (349)
T 4dep_C 323 VAKAAKVKQKV 333 (349)
T ss_dssp EEEECC-----
T ss_pred EEEEEEEeeec
Confidence 99988888864
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=254.08 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=203.4
Q ss_pred CceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCC-----CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMP-----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
....+.+|+++.|.|.+.+.| .+.|.|+|++..+. ..++.. .++.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence 356889999999999998877 78999999986542 234433 45699999999999999999999998877666
Q ss_pred EEEEEe-eCCeEEecCC---CcEEeeCCeEEEEEEE------ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 181 ATLTVQ-MAPIVRERPS---DLRLEVGRDAVFLCGI------EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 181 ~~L~V~-~~p~~~~~p~---~~~v~~G~~v~L~C~~------~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
+.+.|. .+|.+...+. ...+..|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++... .+
T Consensus 92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~----~~~~~~~~---~~-- 162 (315)
T 1itb_B 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL----DNIHFSGV---KD-- 162 (315)
T ss_dssp CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC----CSSSEEEE---TT--
T ss_pred EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC----ccceEeec---Cc--
Confidence 666654 3444433222 3468899999999998 8899999999999988742 12233222 24
Q ss_pred EEEEeecccCCCCeEEEEEEE-cCCCce---eEEEEEEEECCCCCCCCeEEeCCCc-eeecCCCcEEEEEEEcc--CceE
Q psy574 251 LLKIQNVSRTAAPLIILCLGV-NAAGSD---LARASLTVSGPDPNPPPVILFGPAN-QTLPLRSEARLRCQVRG--EGSV 323 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~-n~~g~~---~~~~~l~V~~~~~~~pp~i~~~p~~-~~v~~g~~~~L~C~~~~--~p~i 323 (977)
.|.|.+++.+|+|.|+ |.|. |..|.. .....+.+.......+|.+...+.. ..+..|+.+.|.|.+.+ .|.+
T Consensus 163 ~L~i~~v~~~d~G~Y~-C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 163 RLIVMNVAEKHRGNYT-CHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp EEEESSCCGGGCEEEE-EEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred eEEEEeceehhCcEEE-EEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 9999999999999999 9999 788876 3344555554444457888776664 47899999999999999 6789
Q ss_pred EEEECCEEcCCCCcEEE-----e----------cCceEEEeccCCCC-CeEEEEEEEcCCCceEEEEEEEEE
Q psy574 324 QWWRGEREVGSGPRVNV-----T----------GDGSLVLTDVTKED-SGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 324 ~W~~~g~~l~~~~~~~~-----~----------~~~sl~I~~v~~~d-~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.|+++|..+....+... . ..+.|.|.++...| +|.|+|.|.|..|....++.|.|.
T Consensus 242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 99999999876542111 1 12379999999999 999999999999999998888774
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=224.42 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=164.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+.+|.++++.. +.++|.|+|++| +++.+.+|.|+|+.......|...........+.+.+ +|+|++.|.|+|+|.|
T Consensus 6 P~~P~~~~~~~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A~n 83 (205)
T 1cfb_A 6 PNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIAFN 83 (205)
T ss_dssp CCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEEEE
T ss_pred CCCCCCcEEEe-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEEEE
Confidence 44568899999 999999999999 6778999999998876567786554444456678888 9999999999999999
Q ss_pred cceeCCCC-CceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEec-CCc
Q psy574 622 GSVDGKPS-NLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVS-AST 698 (977)
Q Consensus 622 ~~g~g~~s-~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~-~~~ 698 (977)
..|.|.++ ..+.++|.+.+|+.+|.++++...+.++|.|+|++|...+.||.|.+|.|+|+..+ ...+....+. ...
T Consensus 84 ~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~ 163 (205)
T 1cfb_A 84 KIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163 (205)
T ss_dssp TTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTC
T ss_pred CCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecCCCc
Confidence 99999999 67999999999988999999998888999999999965588999999999999866 3324444443 367
Q ss_pred CeEEecCCCCCceEEEEEEEEcCCCcCCC-CCceEEeecC
Q psy574 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPY-SRPALLSLTS 737 (977)
Q Consensus 699 ~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~-S~~~~~~t~~ 737 (977)
++++|.+|+|++.|.|+|+|+|.+|.|++ |+++.++|.+
T Consensus 164 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e 203 (205)
T 1cfb_A 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203 (205)
T ss_dssp CEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSS
T ss_pred cEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCC
Confidence 89999999999999999999999999995 7888888765
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=235.96 Aligned_cols=236 Identities=18% Similarity=0.199 Sum_probs=185.5
Q ss_pred eEEeCCCeEEEEEEecc-cCce--EEEEEECCeeCCCCceEEeccceEEEccC---ccCCCeE--EEEEEEeCCeeEEEE
Q psy574 109 TTVSASSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDV---RLEDAGE--YVCEAENAVGKISAS 180 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g-~p~~--~i~W~k~~~~l~~~~~~~~~~~~L~I~~v---~~~D~G~--Y~C~a~n~~g~~~~~ 180 (977)
..+.+|++++|.|.+.| .|.+ .|.|+|++..+.. .....+..|.+..+ +.+|+|. |+|.|.|..+..+..
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~ 90 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence 37899999999999988 7777 9999999998865 22234556777666 7788884 999999999998899
Q ss_pred EEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccC
Q psy574 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260 (977)
Q Consensus 181 ~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~ 260 (977)
+.|.|...|.....+....+.+|+.++|.|.+. |.+.+.| +|..+.. . ...+.|.|..+..+
T Consensus 91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~-----~---------~~~~~l~i~~~~~~ 152 (265)
T 2oz4_A 91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP-----L---------GPRAQLLLKATPED 152 (265)
T ss_dssp EEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC-----C---------SSEECCEEECCGGG
T ss_pred EEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC-----C---------CCcEEEEEcccccc
Confidence 999998644433445677889999999999998 8899999 7765521 0 12247889999999
Q ss_pred CCCeEEEEEEEcCC-Ccee---EEEEEEEECCCCCCCCeEEe--CCCceeecCCCcEEEEEEEcc--CceEEEEECCEEc
Q psy574 261 AAPLIILCLGVNAA-GSDL---ARASLTVSGPDPNPPPVILF--GPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV 332 (977)
Q Consensus 261 d~G~Y~~C~a~n~~-g~~~---~~~~l~V~~~~~~~pp~i~~--~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l 332 (977)
|.|.|+ |.|.|.. |... ..+.|.|.. +|.+.. .|.+..+..|+.+.|.|.+.+ .|.+.|++++..+
T Consensus 153 ~~g~Y~-C~a~n~~~g~~~~~s~~~~l~V~~-----~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~ 226 (265)
T 2oz4_A 153 NGRSFS-CSATLEVAGQLIHKNQTRELRVLY-----GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226 (265)
T ss_dssp TTEEEE-EEEEEECSSSEEEEEEEEEEEEEE-----EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE
T ss_pred CCceEE-EEEEcCCCCCcccccccEEEEEEe-----CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc
Confidence 999999 9998654 6655 667788877 444333 356778899999999999998 6799999999732
Q ss_pred CCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 333 GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 333 ~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
. ..+.+. .+...|+|.|+|.|.|..|..+.++.|.|..
T Consensus 227 ~--------~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 227 L--------PIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp C--------CTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C--------CCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 2 234333 3777899999999999999999999998874
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=258.64 Aligned_cols=320 Identities=13% Similarity=0.050 Sum_probs=151.8
Q ss_pred EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCC-
Q psy574 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIG- 425 (977)
Q Consensus 347 ~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~- 425 (977)
+..++.+...+.++..|.| .+.+.++....+. +......+||. +.+... .+++.|+|. |....
T Consensus 68 t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~------------~~~~~~~~pP~-v~~~~~-~~si~v~w~-P~~~~g 131 (414)
T 3se4_A 68 SSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFT------------PFRKAQIGPPE-VHLEAE-DKAIVIHIS-PGTKDS 131 (414)
T ss_dssp CSSCCCTTSCEEEEEEEEE-TTEEEEEECCCBC------------HHHHCCCCCCE-EEEEEC-SSCEEEEEE-CSSSSC
T ss_pred CcccccCCCcEEEEEEEee-CCcCCCEecCcee------------ecccceeCCCe-EEEEEc-CCEEEEEEE-cCCCCC
Confidence 3345677788999999999 5544333211110 00112345664 665544 468999999 65322
Q ss_pred -----CcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcC--CCCCCCCCCCc
Q psy574 426 -----SSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS--HGLSAPSPLSD 498 (977)
Q Consensus 426 -----~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~--~G~s~~S~~s~ 498 (977)
++.+.+|.|.|...+... .+. . .....+++|.+|.|++.|.|+|+|.|. .|.|.+|+...
T Consensus 132 ~~~~~~~~~~~Y~v~y~~~~~~~----------~~~-~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~ 198 (414)
T 3se4_A 132 VMWALDGLSFTYSLVIWKNSSGV----------EER-I--ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 198 (414)
T ss_dssp TTTGGGGSSCEEEEEEEETTTCC----------EEE-E--EEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEE
T ss_pred ceeeeecCcEEEEEEEEECCCCc----------eEE-E--ecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccc
Confidence 246789999998865542 232 2 345678999999999999999999994 67777775533
Q ss_pred eEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEE
Q psy574 499 EIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIY 578 (977)
Q Consensus 499 ~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~ 578 (977)
+.+..+.+ ..++.++.+...+ +++.|+|++|.. ..+|.|+
T Consensus 199 -~~t~~~~~------------------------------------~~~P~~v~~~~~~-~~~~l~W~pp~~--~~~Y~v~ 238 (414)
T 3se4_A 199 -IKTTVENE------------------------------------LPPPENIEVSVQN-QNYVLKWDYTYA--NMTFQVQ 238 (414)
T ss_dssp -EECCSCCS------------------------------------SCCCEEEEEEEET-TEEEEEEECSSS--SCEEEEE
T ss_pred -cccccccc------------------------------------cCCCCccEEEEec-CCeEEEECCCCC--CeEEEEE
Confidence 23312211 1223678887776 679999999842 3499999
Q ss_pred EEec-------CCCCCceEEEEeecCccceEEEC-CCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEE
Q psy574 579 SRGL-------DPPASVAMLTVLHAGEASGFLVT-GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDP 650 (977)
Q Consensus 579 y~~~-------~~~~~~~~~~~~~~~~~~~~~i~-~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~ 650 (977)
|+.. +....|...........+.+.|+ +|.+++.|.|+|+|.|..|.|++|....|.|.++++.+||. +++
T Consensus 239 y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~-l~~ 317 (414)
T 3se4_A 239 WLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNI 317 (414)
T ss_dssp EEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-----------
T ss_pred EEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe-EEE
Confidence 9974 12356654322222345677886 69999999999999999999999999999999998888997 888
Q ss_pred EEecCcEEEEEeeCCCCCC----CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC----C
Q psy574 651 VLLNATSVLLKWKPPPVGT----HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR----A 722 (977)
Q Consensus 651 ~~~~~~sv~v~W~~p~~~~----~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~----~ 722 (977)
... .+++.|.|++|.... .+|.+.+|+|.|++.+...... +..+.++++|.+|+|++.|.|+|+|++. +
T Consensus 318 ~~~-~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~ 394 (414)
T 3se4_A 318 RSL-SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK--IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLN 394 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEC-CCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCceEE--EEecCCeEEeCCCCCCCeEEEEEEEEecccccC
Confidence 754 579999999994221 2357899999998854222211 2346788999999999999999999993 6
Q ss_pred CcCCCCCceEEeecCCC
Q psy574 723 GTGPYSRPALLSLTSGP 739 (977)
Q Consensus 723 G~g~~S~~~~~~t~~~~ 739 (977)
|.|++|.++.++|.+..
T Consensus 395 g~g~~S~~~~~~T~~~~ 411 (414)
T 3se4_A 395 KSSVFSDAVCEKTKPGN 411 (414)
T ss_dssp -----------------
T ss_pred CCCCCCCCEeEEeCCCC
Confidence 99999999999886543
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=244.37 Aligned_cols=262 Identities=18% Similarity=0.278 Sum_probs=194.1
Q ss_pred CceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCC------------------CCceEEe----ccceEEEccCccCCC
Q psy574 107 KDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMP------------------EDRMSVL----PSRSLQLSDVRLEDA 163 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~------------------~~~~~~~----~~~~L~I~~v~~~D~ 163 (977)
.++.+.+|++++|.|.+. +.+.+.|.|+|++.... .+|..+. .+.+|.|.+++.+|+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 367889999999999985 45566899999754321 1233322 345799999999999
Q ss_pred eEEEEEEEeC-CeeEEEEEEEEEeeCCeEE--ecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCc-cc
Q psy574 164 GEYVCEAENA-VGKISASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDR-VD 238 (977)
Q Consensus 164 G~Y~C~a~n~-~g~~~~~~~L~V~~~p~~~--~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~-~~ 238 (977)
|.|+|.|.|. .+..+..+.+.+..+|.+. ..+.......|+.+.|.|.+ .|.|.+.+.|++++..+....... ..
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~ 166 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE 166 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence 9999999986 5667788888888766543 34555567789999999976 689999999999987763211000 11
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE--EEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEE
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA--SLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRC 315 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~--~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C 315 (977)
... ..+.|.|..+..+|.|.|+ |.|.|..+...... .|.|.. +|.+.. ......+..|+.+.|.|
T Consensus 167 ~~~------~~s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~~~l~V~~-----~P~~~~~~~~~~~~~~g~~v~l~C 234 (308)
T 4fom_A 167 TAT------IISQYKLFPTRFARGRRIT-CVVKHPALEKDIRYSFILDIQY-----APEVSVTGYDGNWFVGRKGVNLKC 234 (308)
T ss_dssp CEE------EEEEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEECCCCE-----EEEECCBCCCSCEETTCCSCEEEC
T ss_pred ccc------ccccceEEeeeecCCccEE-EEEEccCCCCceEEeEEEEEec-----CCeeEEcccceeeeeccccEEEEE
Confidence 111 1237999999999999999 99999887765444 444444 455543 34455677889999999
Q ss_pred EEcc--Cc-eEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 316 QVRG--EG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 316 ~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
.+.+ .| .+.|++++..+..... ......+.|.++...|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 235 ~~~g~P~p~~v~W~k~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 235 NADANPPPFKSVWSRLDGQWPDGLL--ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp CEEEESCEEEEECCBSSSCCCSSCB--CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEecCCCCcEEEEEECCeECCCcEE--EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 9999 45 5999999987755422 1233346678999999999999999999999999999998664
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=237.35 Aligned_cols=264 Identities=19% Similarity=0.237 Sum_probs=197.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe--cc--ceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL--PS--RSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4788999999999999999999999999999999999999988643 44432 23 389999999999999999999
Q ss_pred eCCeeEEEEEEEEEeeCCeEEec-----CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 172 NAVGKISASATLTVQMAPIVRER-----PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 172 n~~g~~~~~~~L~V~~~p~~~~~-----p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
|..|..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~- 156 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-----NNGHYQVIVT- 156 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC-----SSSSCEEEEC-
T ss_pred cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECC-----CCCcEEEEEc-
Confidence 99999999999999987776433 356688899999999999999999999999987663 3345555433
Q ss_pred CCceEEEEee-cccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc
Q psy574 247 DGMNLLKIQN-VSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG 321 (977)
Q Consensus 247 ~g~s~L~I~~-v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p 321 (977)
.....|.|.+ +...|.|.|+ |.|.|..|.....+.|.|...+. +|... ......+..+.|.|.... .+
T Consensus 157 ~~~~~l~i~~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~P~--~p~~~----~~~~~~~~~v~l~w~~p~~~g~~~ 229 (305)
T 2nzi_A 157 RSFTSLVFPNGVERKDAGFYV-VCAKNRFGIDQKTVELDVADVPD--PPRGV----KVSDVSRDSVNLTWTEPASDGGSK 229 (305)
T ss_dssp SSEEEEEETTCCCSTTCEEEE-EEEEETTEEEEEEEEEEEEBCCC--CCEEE----EEESCCSSCEEEEEECCSCCSBSC
T ss_pred CCceEEEEecCCccCccEEEE-EEEEeCCCceeeEEEEEEecCCC--CCCCc----eeeeccCCEEEEEEcCCccCCCCc
Confidence 2345899999 9999999999 99999999999999999987432 22211 111134556666666421 22
Q ss_pred eEEEEECCEEcCCCC--cEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy574 322 SVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374 (977)
Q Consensus 322 ~i~W~~~g~~l~~~~--~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~ 374 (977)
.+.+........... .........+.|.++.+.+.|.|+|.|.|..|.+..+.
T Consensus 230 i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~ 284 (305)
T 2nzi_A 230 ITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284 (305)
T ss_dssp EEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred eeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence 222211111111111 11112256799999999999999999999999775443
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=244.27 Aligned_cols=263 Identities=16% Similarity=0.171 Sum_probs=184.2
Q ss_pred EEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEE
Q psy574 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
+...+..+|.+...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+..........+.|.|.+++.+|+|.|+|.|.
T Consensus 17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 94 (316)
T 3vh8_G 17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS 94 (316)
T ss_dssp -------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEE
Confidence 3445667899988887 678899999999999877 67899999998765422122256789999999999999999998
Q ss_pred eCC-----eeEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAV-----GKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~-----g~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.. +..+..+.|.|.. +|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+... ......
T Consensus 95 ~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~-----~~~~~~ 167 (316)
T 3vh8_G 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS-----RLVGQI 167 (316)
T ss_dssp CSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE-----EEECEE
T ss_pred cCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc-----eeeeee
Confidence 632 2345567777763 45666666554 88999999999995 456789999998765311 111111
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCce-----eEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEc
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-----LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-----~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~ 318 (977)
........|.|.+++.+|+|.|+ |.|.|..|.. +....|.|... ..+|.+...+.. .+..|+.++|.|.+.
T Consensus 168 ~~~~~~~~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~s~~s~~~~l~V~~~--~~~p~i~~~~~~-~v~~G~~v~L~C~~~ 243 (316)
T 3vh8_G 168 HDGVSKANFSIGPMMLALAGTYR-CYGSVTHTPYQLSAPSDPLDIVVTGP--YEKPSLSAQPGP-KVQAGESVTLSCSSR 243 (316)
T ss_dssp ETTEEEEEEEECSCCGGGCEEEE-EEEECTTCTTBCCCCCCCEEEEEECS--SCCCEEEEESCS-CCCTTSCCEEEEEES
T ss_pred cCCCceEEEEECCCChhhCceEE-EEEecCCCCccccCCCCCEEEEecCC--CCCCeEEeCCCC-eecCCCcEEEEEECC
Confidence 11112248999999999999999 9999998742 44556777652 235666665543 678999999999998
Q ss_pred c-CceEEEEECCEEcCCCCcEEEec----CceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 319 G-EGSVQWWRGEREVGSGPRVNVTG----DGSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 319 ~-~p~i~W~~~g~~l~~~~~~~~~~----~~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
. .+.+.|+++|..+.......... .+.|.|.++. |+|.|+|.|.|..+.
T Consensus 244 ~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~ 297 (316)
T 3vh8_G 244 SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP 297 (316)
T ss_dssp SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence 8 78999999998764321111111 1469999999 999999999998764
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=239.43 Aligned_cols=258 Identities=19% Similarity=0.292 Sum_probs=179.8
Q ss_pred eEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCC----------CCceEEe--------ccceEEEccCccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMP----------EDRMSVL--------PSRSLQLSDVRLE 161 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~----------~~~~~~~--------~~~~L~I~~v~~~ 161 (977)
.+...|.+..+.+|+++.|.|.+.+. |.+.|.|+|++.... ..++... ...+|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 46667888999999999999999887 888999999976532 1244432 3457999999999
Q ss_pred CCeEEEEEEEeCCee-----EEEEEEEEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecC
Q psy574 162 DAGEYVCEAENAVGK-----ISASATLTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYP 233 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~ 233 (977)
|+|.|+|.|.|..+. ....+.|.|..+|.. ........+.+|+.++|.|.+.+.|++ .+.|+++|..+....
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~ 164 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ 164 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence 999999999998653 224568888765432 122334678899999999999988766 899999998763211
Q ss_pred -----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce---eEEEEEEEECCCCCCCCeEEeCCCceee
Q psy574 234 -----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD---LARASLTVSGPDPNPPPVILFGPANQTL 305 (977)
Q Consensus 234 -----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~---~~~~~l~V~~~~~~~pp~i~~~p~~~~v 305 (977)
....+.+.+. +.|.|.....+|.|.|+ |.|.|..+.. ...+.+.+.. ..+|.+...+.. +
T Consensus 165 ~~~~~~~~~~~~~~~------s~L~i~~~~~d~~g~Y~-C~a~n~~~~~~~~~~~~~~~~~v---~~~P~i~~~~~~--~ 232 (327)
T 2wng_A 165 TNVDPVGESVSYSIH------STAKVVLTREDVHSQVI-CEVAHVTLQGDPLRGTANLSETI---RVPPTLEVTQQP--V 232 (327)
T ss_dssp EEEECSSCCSCEEEE------EEEEEECCTTGGGCEEE-EEEECTTSCSCCEEEEEEGGGTB---CBCCEEEEEEEC--C
T ss_pred cccccccCCCceEEE------EEEEEechhcCcCceEE-EEEeccccCCCcccceEEecccc---CCCCEEEEecCC--c
Confidence 0011122222 26888887777889999 9999998763 3333332221 226666554443 7
Q ss_pred cCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCC--CcEEEecCc------eEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 306 PLRSEARLRCQVRG--EG--SVQWWRGEREVGSG--PRVNVTGDG------SLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 306 ~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~--~~~~~~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
..|+.+.|.|.+.+ ++ .+.|++||..+... .++....++ .|.|..+...|.|.|+|.|.|..|..
T Consensus 233 ~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 233 RAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp SSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred CCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 79999999999998 33 79999999987532 223333343 37788888899999999999999865
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=242.27 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=202.9
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe---ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...+.+..+.+|+++.|.|.+.+. +.|++++.. +.... ..+.|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 74 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP 74 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC--
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC----ceEEeccCceEEEEEcccccccCEEEEEEEccCC
Confidence 57888888989999999999999999874 999976543 22222 23589999999999999999999988
Q ss_pred eeEEEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 175 GKISASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
+..+..+.|.|..+|. +...+....+.+|+.++|.|.+.+ |. +.+.|++++..... ...++.... .+ .
T Consensus 75 ~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~----~~~~~~~~~--~~--~ 145 (292)
T 4dkd_C 75 LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM----RHTNYSFSP--WH--G 145 (292)
T ss_dssp --CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC----SSCCEECCS--SS--C
T ss_pred CCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc----cCCcccccC--Cc--e
Confidence 8888899999998776 456677889999999999999987 44 78999998543321 222333222 23 5
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEE
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWR 327 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~ 327 (977)
|.|.+++.+|+|.|+ |.|.|..+... ..+.|.|.... ..+|.+...+....+..|+.+.|.|.+.+ .+.+.|++
T Consensus 146 L~i~~~~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~~~-~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~ 223 (292)
T 4dkd_C 146 FTIHRAKFIQSQDYQ-CSALMGGRKVMSISIRLKVQKVI-PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223 (292)
T ss_dssp CEETTCCGGGCSEEE-EEECSTTSCEECCCEEEEEECCC-CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCB
T ss_pred EEECCCCHHHCeEEE-EEEEeCCCceeEEEEEEEEeCCC-CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeC
Confidence 999999999999999 99998877553 46788887621 22677888888888889999999999998 34688888
Q ss_pred CCEEcCCCCcEEEe-----cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 328 GEREVGSGPRVNVT-----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 328 ~g~~l~~~~~~~~~-----~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
++..+......... ..++|.|.++...|+|.|+|.|.|..|..+.++.|.|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 224 NNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp SSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 88766544332222 2347999999999999999999999999999999988754
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=219.96 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=160.6
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecC------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILN------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
+.+|.++++...+.++|+|+|++|. ++.+.+|.|+|+..+.. .+..... ....+++.|.+|+|++.|.|+|
T Consensus 5 ~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V 81 (211)
T 3p4l_A 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA-NTKYKNA--NATTLSYLVTGLKPNTLYEFSV 81 (211)
T ss_dssp CCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC----CCCEEE--EESSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCC-cceEEEe--CCCceEEEecCcCCCCEEEEEE
Confidence 3456889999999999999999972 57889999999987642 2222222 2466899999999999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEE
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINM 692 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~ 692 (977)
+|.|..|.|.+|..+.++|.+.+|..+|.++++... +.++|.|+|++| ...||.|.+|.|+|+..+. ..+...
T Consensus 82 ~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~ 159 (211)
T 3p4l_A 82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWVIE 159 (211)
T ss_dssp EEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECC--TTCCSCCCEEEEEEESCTTSCGGGSEEE
T ss_pred EEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCC--CCCCCCEEEEEEEEEECCCCCCCceEEE
Confidence 999999999999999999999999889999999887 468999999998 6789999999999998652 233445
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+.++.++++|.+|+|++.|.|+|+|+|.+|.|++|+++.+.+....
T Consensus 160 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~~ 206 (211)
T 3p4l_A 160 PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAH 206 (211)
T ss_dssp EEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC---
T ss_pred EecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCcccc
Confidence 66778999999999999999999999999999999999999886543
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-26 Score=261.16 Aligned_cols=267 Identities=15% Similarity=0.212 Sum_probs=187.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEe--------cCcEEEEcCCCCCCCeEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRY 76 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y 76 (977)
|.+.+.+....+.+|+.++|.|.+..+.|.+ .|.|+|||+.+.........+. ..+.|.|.+++.+|+|.|
T Consensus 117 P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 196 (438)
T 1qgc_4 117 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 196 (438)
T ss_dssp CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEE
T ss_pred CEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeE
Confidence 4444433333344688999999984337777 9999999999853311111111 134799999999999999
Q ss_pred EEEEEecCceeeeEeEEEEEE--cCCeEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEEC--CeeCC---------
Q psy574 77 QCVVKNVAGTRESTDAVLRVL--VKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRL--GSAMP--------- 141 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~--~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~--~~~l~--------- 141 (977)
+|.|.|..+.. .+.+.+. .++.....|....+.+|++++|.|.+.|.| .+.+.|+|+ +..+.
T Consensus 197 ~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~ 273 (438)
T 1qgc_4 197 TCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGG 273 (438)
T ss_dssp EEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTS
T ss_pred EEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecC
Confidence 99999987653 2333443 223444456677899999999999999887 679999997 43221
Q ss_pred ---------CCceEEec-----cceEEEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEEe----eCCeEEecCCCc
Q psy574 142 ---------EDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQ----MAPIVRERPSDL 198 (977)
Q Consensus 142 ---------~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~----~~p~~~~~p~~~ 198 (977)
.+++.+.. ...|.|.+++.+|+|.|+|.|.|..+ .....+.|.|. .+|.+...+...
T Consensus 274 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~ 353 (438)
T 1qgc_4 274 TYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGS 353 (438)
T ss_dssp CCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCG
T ss_pred CceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCccc
Confidence 24555543 24899999999999999999998443 22344677776 456665555455
Q ss_pred EEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 199 RLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
.+.+|+.++|.|.+.|. |.+ .+.|+++|..+...... ..+.+.+. +.|.|.+++.+| |.|+ |.|.|.
T Consensus 354 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~ 425 (438)
T 1qgc_4 354 AAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS------SSVTVPSSTWPS-ETVT-CNVAHP 425 (438)
T ss_dssp GGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEE------EEEEEEEEHHHH-SCCE-EEEEEG
T ss_pred ccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEE------EEEEEehhhcCC-ceEE-EEEEeC
Confidence 56789999999999997 877 99999998765321000 00112211 379999999889 9999 999999
Q ss_pred CCceeEEEEE
Q psy574 274 AGSDLARASL 283 (977)
Q Consensus 274 ~g~~~~~~~l 283 (977)
.|.......|
T Consensus 426 ~g~~~~~~~i 435 (438)
T 1qgc_4 426 ASSTKVDKKI 435 (438)
T ss_dssp GGTEEEEEEC
T ss_pred CCCcceeeec
Confidence 9986655543
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=230.82 Aligned_cols=274 Identities=12% Similarity=0.095 Sum_probs=182.2
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEE--EccC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTV--TNLT 473 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i--~~L~ 473 (977)
..+|.++++...+ ..+.|+|.++.+ +.+.+. |.|+|+..+.. .|.... .......+.+ ..|.
T Consensus 4 l~~P~nv~~~~~n-~~~iL~W~pp~~-~~~~v~-Y~V~y~~~~~~-----------~W~~~~~c~~~~~~~c~lt~~~l~ 69 (306)
T 3s98_A 4 LKSPQKVEVDIID-DNFILRWNRSDE-SVGNVT-FSFDYQKTGMD-----------NWIKLSGCQNITSTKCNFSSLKLN 69 (306)
T ss_dssp ----CCCEEEEET-TEEEEECC---------CE-EEEEEEESSCS-----------SCEECTTCSSBSSSEEECCC---C
T ss_pred CCCCcEeEEEEEC-CeEEEEEcCCCC-CCCCeE-EEEEEEECCCC-----------CcEECCCccCCCCCEEEccccccC
Confidence 5679999988764 457899999886 445555 99999876433 687642 2344455554 4578
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.| .|.|.+|.... +.+....+ +. || . +.+.
T Consensus 70 ~~~~Y~~rV~A~n-~~~S~~s~~~~-f~~~~~~~---~~---------pP------------------------~-v~~~ 110 (306)
T 3s98_A 70 VYEEIKLRIRAEK-ENTSSWYEVDS-FTPFRKAQ---IG---------PP------------------------E-VHLE 110 (306)
T ss_dssp TTSCEEEEEEEEC-SSCEEEEECCC-BCHHHHCB---CC---------CC------------------------E-EEEE
T ss_pred CCCcEEEEEEEEe-CCcCCCEeeee-EechhhCc---cC---------CC------------------------e-EEEE
Confidence 9999999999999 77665543211 11111111 00 11 2 5555
Q ss_pred EeCCCeEEEEEEec-C-------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee--cc
Q psy574 554 PMTSTSVKLTWEIL-N-------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF--GS 623 (977)
Q Consensus 554 ~~~~tsv~lsW~~p-~-------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n--~~ 623 (977)
... ++|.|+|+|+ . ++.+.+|+|.|++.+....|... ...+.+.|.+|+|++.|.|+|+|.+ ..
T Consensus 111 ~~~-~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~~~-----~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~ 184 (306)
T 3s98_A 111 AED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE-----NIYSRHKIYKLSPETTYCLKVKAALLTSW 184 (306)
T ss_dssp ECS-SCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEEEE-----EECTEEEECSCCTTCEEEEEEEEEEGGGT
T ss_pred EcC-CEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEEEe-----cccceEEEccCCCCCeEEEEEEEEEccCC
Confidence 544 6899999966 3 35788999999998865555421 2357899999999999999999999 68
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEe--------cCCcceEEE--E
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG--------GNNSALINM--T 693 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~--------~~~~~~~~~--~ 693 (977)
|.|+.|..+.++|.++.|+.+|.++.+...+ +++.|+|++| .... +|.+.|.. .+...+... -
T Consensus 185 g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~~-~s~~l~W~~p--~~~~----~~~v~~~~gy~~~~~~~~~~~W~~~~~c 257 (306)
T 3s98_A 185 KIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYT--YANM----TFQVQWLHAFLKRNPGNHLYKWKQIPDC 257 (306)
T ss_dssp EECCCCCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECS--SSSC----EEEEEEEEGGGGSCC----CCCEECGGG
T ss_pred CCCCCCCcEeeEecCCCcCCCCceEEEEEec-CEEEEEeCCC--CCcE----EEEEEEehhhhhccccccccCceECCCc
Confidence 9999999999999999998899999987765 7899999997 3222 34444432 122233311 0
Q ss_pred ecCCcCeEEecCC-CCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 694 VSASTPTLLLTNL-SAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 694 ~~~~~~~~~l~~L-~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.....+.+.+.+| .+...|.|||+|.|..|.|.+|+.+.|.|..
T Consensus 258 ~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s~~~~~~~~~ 302 (306)
T 3s98_A 258 ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI 302 (306)
T ss_dssp TTBSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCCCCEEEEC--
T ss_pred eeCCCccccCchhhcccCCEEEEEEEccCCCccccccccccCccc
Confidence 1235677888874 4555999999999999999999999997754
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=239.30 Aligned_cols=257 Identities=16% Similarity=0.265 Sum_probs=177.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEEee---------------cCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPID---------------FENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~l~---------------~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+. |.+.|.|+|+ |..+. .....|+.+..+ ++|.|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKA-SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVEL 83 (344)
T ss_dssp EECCCEEECTTCCEEEEEEE-ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEeCCCcEEEEEEc-CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEE
Confidence 45778999999999999998 454 4688999996 43221 123467776532 47999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCee
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSA 139 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~ 139 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..
T Consensus 84 ~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~ 162 (344)
T 1za6_B 84 SSLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT 162 (344)
T ss_dssp CSCCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred CCCCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence 999999999999999985433 2344678887 34555544434456799999999999876 65 79999999876
Q ss_pred CCC----------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE------------------------E
Q psy574 140 MPE----------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT------------------------V 185 (977)
Q Consensus 140 l~~----------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~------------------------V 185 (977)
+.. +++. ....|.|.++..+| |.|+|.|.|..+.......+. +
T Consensus 163 ~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 239 (344)
T 1za6_B 163 SGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQ 239 (344)
T ss_dssp TTEEECCCEECTTSCEE--EEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------C
T ss_pred CceeECCCeECCCCCEE--EEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCC
Confidence 421 1111 22479999999888 999999999887533222221 2
Q ss_pred eeCCeEEecCCCcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeeccc
Q psy574 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSR 259 (977)
Q Consensus 186 ~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~ 259 (977)
..+|.+...+.......|..++|.|.+.|. | .+.+.|+|+|..+... .........+|. +.|.|.....
T Consensus 240 ~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~-----~~~~~~~~~~g~~~~~s~l~i~~~~~ 314 (344)
T 1za6_B 240 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY-----KTTPPVLDSDGSFFLYSKLTVDKSRW 314 (344)
T ss_dssp CBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSE-----EECCCEECTTSCEEEEEEEEECHHHH
T ss_pred CcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCc-----EecceEECCCCcEEEEEEEEEChHHc
Confidence 356766655443333356679999999985 4 3589999999876311 111111122232 3677777777
Q ss_pred CCCCeEEEEEEEcCCCce
Q psy574 260 TAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 260 ~d~G~Y~~C~a~n~~g~~ 277 (977)
+|.|.|+ |.|.|.....
T Consensus 315 ~~~g~Yt-C~a~~~~l~~ 331 (344)
T 1za6_B 315 QQGNVFS-CSVMHEALHN 331 (344)
T ss_dssp HTTCEEE-EEEECTTSTT
T ss_pred cCCCeEE-EEEEcCCCCC
Confidence 8899999 9999987643
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=222.74 Aligned_cols=281 Identities=14% Similarity=0.132 Sum_probs=198.6
Q ss_pred CeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 294 PVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 294 p~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
+.+..++..+.+..|++++|.|.+.+ .+.|.|++++..+...........++|.|.++...|+|.|+|. ..|..
T Consensus 7 ~~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~ 83 (325)
T 1n26_A 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRP 83 (325)
T ss_dssp CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSSSC
T ss_pred CccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCCEE
Confidence 34455555666689999999999886 4689999988765322222234467899999999999999999 36777
Q ss_pred EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEe-eCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCC
Q psy574 371 SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN-QTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449 (977)
Q Consensus 371 ~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~-~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~ 449 (977)
...+.|.|.. +|++|. +.+.. ....++.|+|.++.+ ++ ....|.|+|+......
T Consensus 84 ~~~~~L~V~~----------------pP~~P~-l~c~~~~~~~~~~c~W~~~~~-~~-~~~~y~l~~~~~~~~~------ 138 (325)
T 1n26_A 84 AGTVHLLVDV----------------PPEEPQ-LSCFRKSPLSNVVCEWGPRST-PS-LTTKAVLLVRKFQNSP------ 138 (325)
T ss_dssp SCEEEEEECC----------------CCCCCC-CEEEBSSTTSCEEEEECCSSC-CC-TTCEEEEEEEEESSSS------
T ss_pred eeeEEEEecc----------------CCCCCc-eeEEeecCCCcEEEEECCCCC-CC-CCceEEEEEEEccCCC------
Confidence 8888998874 467777 66653 346689999998766 22 4578888775431100
Q ss_pred CCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCc
Q psy574 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRG 529 (977)
Q Consensus 450 ~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g 529 (977)
...| ...|....
T Consensus 139 --~~~~-----------------------~~~c~~~~------------------------------------------- 150 (325)
T 1n26_A 139 --AEDF-----------------------QEPCQYSQ------------------------------------------- 150 (325)
T ss_dssp --CEEE-----------------------EEEEEEET-------------------------------------------
T ss_pred --CCcc-----------------------cccCCCCC-------------------------------------------
Confidence 0000 00000000
Q ss_pred chHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC-
Q psy574 530 ESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA- 608 (977)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~- 608 (977)
.....++.|..|.
T Consensus 151 ------------------------------------------------------------------~~~~~~c~i~~~~~ 164 (325)
T 1n26_A 151 ------------------------------------------------------------------ESQKFSCQLAVPEG 164 (325)
T ss_dssp ------------------------------------------------------------------TTTEEEEEECCCTT
T ss_pred ------------------------------------------------------------------CCCCEEEEECCCcc
Confidence 0112445666665
Q ss_pred CCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecC--cEEEEEeeCCCCCCCCeeeeEEEEEEEecCC
Q psy574 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNA--TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN 686 (977)
Q Consensus 609 p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~--~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~ 686 (977)
+++.|.|+|.|.|..|.+. +....+.+...++++||.++++...+. +++.|+|++|.....++.+++|+|+|+..+.
T Consensus 165 ~~~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~ 243 (325)
T 1n26_A 165 DSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS 243 (325)
T ss_dssp CCCEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC
T ss_pred cCcEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCC
Confidence 7788999999999888873 445667666666667999999887653 5899999999644467789999999998765
Q ss_pred cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceEEeecC
Q psy574 687 SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPALLSLTS 737 (977)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~~~t~~ 737 (977)
..+....+....++++|.+|+|++.|.|+|+|+|..|.|.+ |+++..++..
T Consensus 244 ~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~ 297 (325)
T 1n26_A 244 KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWT 297 (325)
T ss_dssp SCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCC
T ss_pred CCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCC
Confidence 45555555566789999999999999999999999887665 5666665533
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-23 Score=223.97 Aligned_cols=281 Identities=12% Similarity=0.113 Sum_probs=191.1
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
..||.++++...+..++.|+|.+|....++.+.+|.+.+.. .|... .....+.+.+|.++..
T Consensus 4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~---------------~~~~~---~~~~~~~~~~~~~~~~ 65 (314)
T 3bpo_C 4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD---------------KQDKK---IAPETRRSIEVPLNER 65 (314)
T ss_dssp CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC-----------------CCCE---EESSSEEEEECCCSSC
T ss_pred CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc---------------cCceE---eccccEEEEEEcCCCc
Confidence 37899999998889999999999876445677889987743 11111 1134456788999999
Q ss_pred EEEEEEEEc-CCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeC
Q psy574 478 YTFLVRALN-SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMT 556 (977)
Q Consensus 478 Y~~~V~a~n-~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~ 556 (977)
|.|+|+|.+ ..|.+.+|+....... .++.. ++.++.++++...+
T Consensus 66 y~~~V~a~~~~~~~g~~s~~~~~~~~---~~~~~--------------------------------pp~~P~~l~c~~~~ 110 (314)
T 3bpo_C 66 ICLQVGSQCSTNESEKPSILVEKCIS---PPEGD--------------------------------PESAVTELQCIWHN 110 (314)
T ss_dssp EEEEEEECC---------CCEEEEEC---CCCC---------------------------------CCSSCEEEEEEEET
T ss_pred EEEEEEEEecCCCCCCCCcCeeeeee---cCCCC--------------------------------CCCCCEeceEEECC
Confidence 999999964 5566666554332211 11110 13345889999999
Q ss_pred CCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-EeecCccceEEECCCC----CCcEEEEEEEEeecceeCCCCC
Q psy574 557 STSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VLHAGEASGFLVTGLA----HYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 557 ~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~----p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.+++.|+|+++ ..+.+.+|.|+|+..+. ..+..+. .........+.+..+. .++.|.|+|.|.|..|.+..+
T Consensus 111 ~~~~~c~W~~~~~~~~~~~Y~l~y~~~~~-~~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~- 188 (314)
T 3bpo_C 111 LSYMKCSWLPGRNTSPDTNYTLYYWHRSL-EKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS- 188 (314)
T ss_dssp TTEEEEEEECCC---CCCCEEEEEEESSC-SSCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-
T ss_pred CCeEEEEECCCCCCCCCccEEEEEEeCCC-CccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-
Confidence 99999999999 44568999999987653 3333321 1112345678887776 488999999999998887544
Q ss_pred ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe-------------cCC
Q psy574 631 LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV-------------SAS 697 (977)
Q Consensus 631 ~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~-------------~~~ 697 (977)
...+.+.+.+.+.||.++++. ...+++.|+|++|. ..++.+++|+|+|+..+...+....+ ...
T Consensus 189 ~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~--~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~ 265 (314)
T 3bpo_C 189 FNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVEN 265 (314)
T ss_dssp EEEECSSSSEECCCCEEEEEE-EETTEEEEEEECCT--TCCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSS
T ss_pred cEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCC--ccCCceEEEEEEEEECCCCcceEEecccccccccccccccCC
Confidence 466666665544599999987 67789999999994 45666789999999866444433222 245
Q ss_pred cCeEEecCCCCCceEEEEEEEEcC------CC-cCCCCCceEEeec
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNR------AG-TGPYSRPALLSLT 736 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~------~G-~g~~S~~~~~~t~ 736 (977)
.+++.|.+|+|++.|.|+|||.+. .| .|.||+++.+.+.
T Consensus 266 ~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~ 311 (314)
T 3bpo_C 266 TSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKK 311 (314)
T ss_dssp EEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESCC
T ss_pred ceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEeccc
Confidence 678999999999999999999995 56 4889999988544
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=211.86 Aligned_cols=177 Identities=25% Similarity=0.425 Sum_probs=153.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCC-CCCCCeEEEEeCCEEeecCCCceEEEe--c--------CcEEEEcCCCCCCC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNGHPIDFENSKRLRLV--D--------GTNLAIQDSRKTDD 73 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~g~~l~~~~~~r~~~~--~--------~g~L~I~~v~~~D~ 73 (977)
.+.|...|.++.+.+|++++|.|.+ . +.|.+.|.|+|||..+......++.+. . ++.|.|.+++.+|+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEE-EEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhheEEecCCcEEEeccc-ccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 4789999999999999999999999 5 889999999999999965433344433 3 35799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccce
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRS 152 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~ 152 (977)
|.|+|.+.|..+...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.+ .|.|+|++..+...... ..++.
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~~~ 159 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQRS 159 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCCEE
T ss_pred cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCCCe
Confidence 99999999988876677789999999999999999999999999999999999999 99999999988654322 45678
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEE-EEEEEEE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKIS-ASATLTV 185 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~L~V 185 (977)
|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9999997 89999999999999875 7888888
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=211.25 Aligned_cols=184 Identities=30% Similarity=0.560 Sum_probs=156.4
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--cC--cEEEEcCCCC-CCCeEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DG--TNLAIQDSRK-TDDGRYQ 77 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~~--g~L~I~~v~~-~D~G~Y~ 77 (977)
.-.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|||..+. ....|+.+. .+ ..|.|.+++. +|+|.|+
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECC-TTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECC-CCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence 346889999999999999999999999 789999999999999995 334455543 34 3799999999 9999999
Q ss_pred EEEEecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe
Q psy574 78 CVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL 148 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~ 148 (977)
|.+.|..|...+..+.|.|..+ |.+...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+.. .++ ..
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-~~ 160 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SL 160 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTE-EE
T ss_pred EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeE-Ec
Confidence 9999998875677789999865 7888888888999999999999999999999999999998864 333 33
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEE-EEEEEeeCC
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISAS-ATLTVQMAP 189 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~L~V~~~p 189 (977)
.++.|.|.++..+|+|.|+|.|.|..|..... +.|.|...+
T Consensus 161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 56799999999999999999999999987654 889988543
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=211.85 Aligned_cols=183 Identities=28% Similarity=0.468 Sum_probs=158.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-EEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ...|+.+..++ .|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKL-FDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCT-TCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CceeecCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccc-cCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 4677888888999999999999998 7888999999999999843 34577766554 6999999999999999999998
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D 162 (977)
.|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .++.+..++.|.|.++..+|
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 164 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKED 164 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGG
T ss_pred CCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhh
Confidence 88766677889999999999999899999999999999999999999999999998865 45566677899999999999
Q ss_pred CeEEEEEEEeCCeeE-EEEEEEEEeeCC
Q psy574 163 AGEYVCEAENAVGKI-SASATLTVQMAP 189 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~-~~~~~L~V~~~p 189 (977)
+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 165 ~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 165 AGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 999999999999986 456888888665
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=227.03 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=181.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEec----cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP----SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.+.....+..+.+|+++.|.|.+.|. |.|+|++..+.. +..... .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g 75 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence 334445556788999999999999874 999999988742 233322 25899999999999999999999887
Q ss_pred e---EEEEEEEEEeeCCeEEecCC-C---cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 176 K---ISASATLTVQMAPIVRERPS-D---LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 176 ~---~~~~~~L~V~~~p~~~~~p~-~---~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
. ....+.|.|..+........ . ..+.+|+.+.|.|.+. .|.+.+.|++++....+. ..+ ....+
T Consensus 76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~-----~~~---~~~~~ 146 (289)
T 3mjg_X 76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP-----VPY---DHQRG 146 (289)
T ss_dssp ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC-----CCE---ETTTE
T ss_pred CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc-----eee---cCCcC
Confidence 6 34555666654433222111 1 5688999999999998 778899999876332211 000 10011
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEE
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQW 325 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W 325 (977)
.+ ...|+|.|+ |.|.|..+.... ...|.|... .+|.+...+....+..|+.+.|.|.+.+ .+.+.|
T Consensus 147 --~~-----~~~d~G~Y~-C~a~n~~~~~~s~~~~l~v~~~---~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W 215 (289)
T 3mjg_X 147 --FS-----GIFEDRSYI-CKTTIGDREVDSDAYYVYRLQV---SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215 (289)
T ss_dssp --EE-----ECCCSSEEE-EEEEETTEEEECCCEEEEECCC---CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEE
T ss_pred --ee-----eeccCcEEE-EEEEeCCceeeeeeEEEEecCC---CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEE
Confidence 11 357999999 999987665433 345666543 3555566666678999999999999998 678999
Q ss_pred EECCEEcCCCC-cEEEe-------cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 326 WRGEREVGSGP-RVNVT-------GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 326 ~~~g~~l~~~~-~~~~~-------~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
++++....... ..... ..++|.|.++...|+|.|+|.|.|..|....++.|.|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp ECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred EcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 98876543321 11111 22579999999999999999999999999999999998543
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=238.46 Aligned_cols=264 Identities=15% Similarity=0.167 Sum_probs=173.1
Q ss_pred cccceecccceEEeCC--CcEEEEEECCCCCC-CCeEEEEeCCEEeecCCCceEEEecCc------EEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAG--DTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G--~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~~r~~~~~~g------~L~I~~v~~~D~G~ 75 (977)
.|.+.+.|.......| ++++|.|.+....| .+.|.|+|||+.+............+| .|.|.+++.+|+|.
T Consensus 7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~ 86 (323)
T 2wqr_A 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT 86 (323)
T ss_dssp CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence 4566665544444445 69999999933345 479999999999853321111111133 57888888889999
Q ss_pred EEEEEEecCceeeeEeEEEE---EEcCC-eEEeCCCceEEeCCCeEEEEEEeccc-Cce---EEEEEECCe-eCCCCceE
Q psy574 76 YQCVVKNVAGTRESTDAVLR---VLVKP-YIIRGPKDTTVSASSIIVFECSVGGD-AVL---TVHWKRLGS-AMPEDRMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~---V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~---~i~W~k~~~-~l~~~~~~ 146 (977)
|+|+|.|..+... ..+.+. +...| .+...|....+.+|++++|.|.+.|. |.+ .|.|+|+++ .+......
T Consensus 87 Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~ 165 (323)
T 2wqr_A 87 YTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRK 165 (323)
T ss_dssp EEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCE
T ss_pred EEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCC
Confidence 9999999866432 222110 11234 34555666678899999999999775 555 899999754 33221111
Q ss_pred --------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE----EeeCCeEEecCCCcEEeeCCeEEEEEEEec
Q psy574 147 --------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT----VQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214 (977)
Q Consensus 147 --------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~----V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g 214 (977)
+...+.|.|.+++.+|+|.|+|.|.|..+.......+. +..+|.+...+.......|+.++|.|.+.|
T Consensus 166 ~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g 245 (323)
T 2wqr_A 166 EEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245 (323)
T ss_dssp EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEE
T ss_pred CccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeee
Confidence 11234799999999999999999999864322222332 225676655433322223999999999988
Q ss_pred -CCCC-eEEEEEcCeeeeecCC-------CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 215 -SPPP-STFWMLEGNRSLIYPG-------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 215 -~p~~-~i~W~~~g~~~~~~~~-------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.+ .+.|+|+|..+..... ...+.+... +.|.|..++.+|.|.|+ |.|.|....
T Consensus 246 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~ 309 (323)
T 2wqr_A 246 FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF------SRLEVTRAEWEQKDEFI-CRAVHEAAS 309 (323)
T ss_dssp EBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEE------EEEEEEHHHHHHCCCEE-EEEECTTST
T ss_pred eeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEE------EEEEEChHHccCCCEEE-EEEEeCCCC
Confidence 4443 7999999987632100 001122221 38999999999999999 999999876
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=207.87 Aligned_cols=181 Identities=25% Similarity=0.443 Sum_probs=152.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++.|...|.++.+.+|++++|.|.+ .+.|.+.+.|+|++..+......|+.+..+++|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 4678899999999999999999999 788999999999999987667788888888999999999999999999999887
Q ss_pred -ceeeeEeEEEEEEcCCeEEeCCC--ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-ccceEEEccCc
Q psy574 85 -GTRESTDAVLRVLVKPYIIRGPK--DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVR 159 (977)
Q Consensus 85 -g~~~s~~~~l~V~~~P~~~~~p~--~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~ 159 (977)
+......+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++.+. .+..|.|.++.
T Consensus 81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~ 160 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII 160 (189)
T ss_dssp TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence 44445667888888888776655 457788999999999999999999999999988754 33333 35689999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 161 NSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 999999999999999998888888875
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=209.99 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=157.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCC-ccceEEEEEEecCCCCCceEEEEee--cCccceEEECCCCCCcEEEEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTD-YIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~-~i~~Y~v~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
+.+|.++++...+. ++.|+|++| .++ .+.+|.|+|+..+ ...|....... ....++++|.+|+|++.|.|+|+
T Consensus 9 P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 86 (209)
T 2vkw_A 9 PSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVG-EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA 86 (209)
T ss_dssp CCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESS-CCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEE
T ss_pred CcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCC-CCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEE
Confidence 44468899988888 689999999 344 5999999999876 46676554422 13456899999999999999999
Q ss_pred EeecceeCCCCCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCC
Q psy574 619 PFFGSVDGKPSNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~ 697 (977)
|.|..|.|.++..+.++|.+. +|. +|.++.+...+.++|.|+|++| ...+|.|.+|.|+|+..+........+.++
T Consensus 87 A~n~~G~~~~s~~~~~~T~~~~~P~-~P~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~ 163 (209)
T 2vkw_A 87 ALNGKGLGEISAASEFKTQPVREPS-APKLEGQMGEDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKPEIRLPSG 163 (209)
T ss_dssp EEETTEECCCCCCEEEECCCSCSCC-CCEEEEEECTTSSCEEEEEECC--CCTTSCCCEEEEEEEETTSCCCCCEEECTT
T ss_pred EEcCCcccCCcccccccccCCCCCC-CCcccccccccCCeEEEEEECc--ccCCCCCceEEEEEECCCCCCceeeecCCC
Confidence 999999999999999999887 565 7788888888899999999998 788999999999999843444444566777
Q ss_pred cCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.++++|.+|+|++.|.|+|+|+|.+|.|++|+++.+++..
T Consensus 164 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~ 203 (209)
T 2vkw_A 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAA 203 (209)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC--
T ss_pred ccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhhh
Confidence 8899999999999999999999999999999988887654
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=236.07 Aligned_cols=275 Identities=12% Similarity=0.100 Sum_probs=185.6
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcC--eEEEEccC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSP--ILTVTNLT 473 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~--~~~i~~L~ 473 (977)
..+|.++++...+ .++.|+|.++.+ .++.+. |.|+|+..... .|.... ...... .++..+|.
T Consensus 8 l~~P~nv~~~~~~-~~~~L~W~p~~~-~~~~i~-Y~V~y~~~~~~-----------~W~~~~~c~~~~~~~~~~t~~~l~ 73 (414)
T 3se4_A 8 LKSPQKVEVDIID-DNFILRWNRSDE-SVGNVT-FSFDYQKTGMD-----------NWIKLSGCQNITSTKCNFSSLKLN 73 (414)
T ss_dssp ---CCCCCEEEET-TEEEEC-----------CE-EEEEEEESSCC-----------CCEEEEEEEEESCSCEECCSSCCC
T ss_pred CCCCceeEEEEEC-CceEEEEcCCCC-CCCCeE-EEEEEEECCCC-----------CcEECcCccCCCCCEEECCccccc
Confidence 5678999988875 468999999987 455666 99999976433 686431 233333 44555789
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.| .|.|.++.... +....... ..|| . +.+.
T Consensus 74 ~~~~Y~~rV~A~n-~~~S~~s~~~~-~~~~~~~~------------~~pP------------------------~-v~~~ 114 (414)
T 3se4_A 74 VYEEIKLRIRAEK-ENTSSWYEVDS-FTPFRKAQ------------IGPP------------------------E-VHLE 114 (414)
T ss_dssp TTSCEEEEEEEEE-TTEEEEEECCC-BCHHHHCC------------CCCC------------------------E-EEEE
T ss_pred CCCcEEEEEEEee-CCcCCCEecCc-eeecccce------------eCCC------------------------e-EEEE
Confidence 9999999999999 44443322111 00000000 0011 1 4555
Q ss_pred EeCCCeEEEEEEec--CC-------CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec--
Q psy574 554 PMTSTSVKLTWEIL--NT-------DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG-- 622 (977)
Q Consensus 554 ~~~~tsv~lsW~~p--~~-------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~-- 622 (977)
... ++|.|+|+ | .+ +.+.+|+|.|++.+....+. +. ....++.|.+|.|++.|.|+|+|+|.
T Consensus 115 ~~~-~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~---~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~~ 187 (414)
T 3se4_A 115 AED-KAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEER---IE--NIYSRHKIYKLSPETTYCLKVKAALLTS 187 (414)
T ss_dssp ECS-SCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEE---EE--EECSEEEECCCCTTCEEEEEEEEECTTT
T ss_pred EcC-CEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEE---Ee--cCCcEEEEcCCCCCCeEEEEEEEEeccC
Confidence 544 58999999 6 32 35679999999987543332 11 34578999999999999999999994
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEec--------CCcceEEEE-
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG--------NNSALINMT- 693 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~--------~~~~~~~~~- 693 (977)
.|.|+.|..+.+.|.+++|..+|.++++...+ +++.|+|++|. + ..+|.|+|+.. +...+....
T Consensus 188 ~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~-----~-~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~ 260 (414)
T 3se4_A 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTY-----A-NMTFQVQWLHAFLKRNPGNHLYKWKQIPD 260 (414)
T ss_dssp CCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSS-----S-SCEEEEEEEESGGGSCCCC--CCCCBCST
T ss_pred CCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCC-----C-CeEEEEEEEehhccccccccccCceECCC
Confidence 68888898889999988888899999988765 67999999973 1 23999999863 112222111
Q ss_pred -ecCCcCeEEec-CCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 694 -VSASTPTLLLT-NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 694 -~~~~~~~~~l~-~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.....+.+.+. +|.+++.|.|+|+|+|..|.|++|+...|.+....
T Consensus 261 ~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~ 308 (414)
T 3se4_A 261 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 308 (414)
T ss_dssp TTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-
T ss_pred ccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhcc
Confidence 11235677776 69999999999999999999999999999877654
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-23 Score=205.12 Aligned_cols=176 Identities=24% Similarity=0.389 Sum_probs=147.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+......++.... .+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 4678899999999999999999999 67899999999999999544333333332 2579999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCcc
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~ 160 (977)
|..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++..+..... ....|.|.++
T Consensus 81 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~~~L~i~~~-- 155 (182)
T 1rhf_A 81 DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SPSVLNVTGV-- 155 (182)
T ss_dssp SCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SSEEEEECCC--
T ss_pred cCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---CceEEEEecc--
Confidence 987766777889999999999999999999999999999999999999 9999999998865432 6678999998
Q ss_pred CCCeEEEEEEEeCCeeEE-EEEEEEEe
Q psy574 161 EDAGEYVCEAENAVGKIS-ASATLTVQ 186 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~~~-~~~~L~V~ 186 (977)
+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 156 ~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 156 TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 599999999999999865 47777763
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=204.52 Aligned_cols=178 Identities=23% Similarity=0.443 Sum_probs=151.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEe-CCEEeecCCCceEEEe----cCcEEEEcCCCCCCCeEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k-~g~~l~~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~ 79 (977)
..|.+.|.++.+.+|++++|.|.+ .+.| .+.|.|+| ||+.+.. ...++.+. .++.|.|.+++.+|+|.|+|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEecCCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccC-CCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence 568889999999999999999999 5555 88999999 9998853 34466553 246799999999999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEc
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLS 156 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~ 156 (977)
+.+..+...+..+.|.|..+|.+...|....+.+|+++.|.|.+.|.|.+.+.|++++..+. ..++....++.|.|.
T Consensus 81 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~ 160 (191)
T 1epf_A 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160 (191)
T ss_dssp EEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEET
T ss_pred EEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEEC
Confidence 99998666677889999999999999999999999999999999999999999999999874 346666677899999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++..+|+|.|+|.|.|..+.......+.|
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999999998865444444433
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-23 Score=213.80 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=157.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++...+.++|.|+|++| ++.+.+|.|+|+..+... +...... ...+++.|.+|+|++.|.|+|+|+|..
T Consensus 6 ~~~P~~l~~~~~~~~si~l~W~~p-~g~i~~Y~v~~~~~~~~~-~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 81 (234)
T 3f7q_A 6 LGAPQNPNAKAAGSRKIHFNWLPP-SGKPMGYRVKYWIQGDSE-SEAHLLD--SKVPSVELTNLYPYCDYEMKVCAYGAQ 81 (234)
T ss_dssp CCCCEEEEEEECSSSCEEEEEECC-SSCCCEEEEEEEETTSCG-GGCEEEE--ESSSEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCcceEEEEcCCCEEEEEEECC-CCccceEEEEEEECCCCc-cceEEEc--CCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 445689999999999999999998 458999999999876432 2222222 467899999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-----ceEEE-EecCC
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-----ALINM-TVSAS 697 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-----~~~~~-~~~~~ 697 (977)
|.|++|..+.++|.+.+|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+.. ..... .....
T Consensus 82 G~g~~s~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T 3f7q_A 82 GEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 158 (234)
T ss_dssp EECCCCCCEEEECCCCCCC-CCCCCEEEECSSSCEEEECCCC--SCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCSCTT
T ss_pred CcCCCCCeEEEEcCCCCCC-CCCccEEEEecCCEEEEEEcCC--CCCCCceeEEEEEEEECCCCCCccCcceEEEecCCc
Confidence 9999999999999999997 5789999999999999999998 67889999999999975421 11222 22445
Q ss_pred cCeEEecCCCCCceEEEEEEEEcCCCcCCCCCc-eEEeecCCC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP-ALLSLTSGP 739 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~-~~~~t~~~~ 739 (977)
.++++|.+|+|++.|.|+|+|+|.+|.|++|.+ +.++|.+..
T Consensus 159 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~ 201 (234)
T 3f7q_A 159 NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKR 201 (234)
T ss_dssp CCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCC
T ss_pred ceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCC
Confidence 679999999999999999999999999999985 677776654
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=208.22 Aligned_cols=186 Identities=28% Similarity=0.455 Sum_probs=150.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--CcEEEEcCCC-CCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSR-KTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g~L~I~~v~-~~D~G~Y~C~a 80 (977)
..|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|+|..+.......+.... +..|.|.+++ .+|+|.|+|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 46889999999999999999999999 68899999999999999533222222221 2469999994 99999999999
Q ss_pred EecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC----CceEEec
Q psy574 81 KNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE----DRMSVLP 149 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~----~~~~~~~ 149 (977)
.|..|. .+..+.|.|..+ |.+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~ 162 (212)
T 2yd6_A 84 SNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR 162 (212)
T ss_dssp EETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred EcCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence 998887 456678888754 6788888888999999999999999999999999999998864 2444332
Q ss_pred ---cceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEEeeCCeE
Q psy574 150 ---SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIV 191 (977)
Q Consensus 150 ---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~~p~~ 191 (977)
...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..++.+
T Consensus 163 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~ 208 (212)
T 2yd6_A 163 SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208 (212)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence 3789999999999999999999999985 46688888877665
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=205.23 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=154.1
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--ceEEEec-CcEEEEcCCCCCCCeEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRLVD-GTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--~r~~~~~-~g~L~I~~v~~~D~G~Y~C 78 (977)
+--.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .++.... +..|.|.+++.+|+|.|+|
T Consensus 2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 2 TTQAPTFTQPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCCeEEccCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence 4456889999999999999999999999 7889999999999999865442 3333332 2379999999999999999
Q ss_pred EEEecCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccc---
Q psy574 79 VVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR--- 151 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~--- 151 (977)
.+.|..|... ..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+..++
T Consensus 81 ~~~n~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 159 (194)
T 2a38_A 81 KATNGSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159 (194)
T ss_dssp EEEETTEEEE-EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEE
T ss_pred EEEcCCceEe-EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEE
Confidence 9999887643 45678887 5778888888889999999999999999999999999999988653 44444333
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 160 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 79999999999999999999999998888888874
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=233.08 Aligned_cols=264 Identities=18% Similarity=0.265 Sum_probs=185.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 45567899999999999997764 5789999863 211 124666543 35899999
Q ss_pred CccCCCeEEEEEEEeCCee---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCee
Q psy574 158 VRLEDAGEYVCEAENAVGK---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNR 228 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~ 228 (977)
++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 165 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS 165 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence 9999999999999987543 22346788773 4555543333445899999999999885 776 9999999875
Q ss_pred eeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-------------CCCC
Q psy574 229 SLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-------------DPNP 292 (977)
Q Consensus 229 ~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-------------~~~~ 292 (977)
+...... ..+.+... +.|.|.+++.+| |.|+ |.|.|..+.......+.+.+. ....
T Consensus 166 ~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (444)
T 1igt_B 166 SGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG 237 (444)
T ss_dssp TTEEECCCEEETTEEEEE------EEEEECSTTTTT-SCCE-EEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCC
T ss_pred CCeEecCccccCCcEEEE------EEEEEchhhcCC-CeEE-EEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCC
Confidence 3111000 01222222 379999999999 9999 999999998755555543210 1112
Q ss_pred CCeE-EeCCCcee-ecCCCcEEEEEEEcc-C---c--eEEEEECCEEcCCCCc--EEEe------cCceEEEeccCCCCC
Q psy574 293 PPVI-LFGPANQT-LPLRSEARLRCQVRG-E---G--SVQWWRGEREVGSGPR--VNVT------GDGSLVLTDVTKEDS 356 (977)
Q Consensus 293 pp~i-~~~p~~~~-v~~g~~~~L~C~~~~-~---p--~i~W~~~g~~l~~~~~--~~~~------~~~sl~I~~v~~~d~ 356 (977)
+|.+ ..+|.... +..|+.+.|.|.+.+ . + .|.|++++..+..... .... ..++|.|.++...|.
T Consensus 238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~ 317 (444)
T 1igt_B 238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG 317 (444)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccC
Confidence 4554 55555444 689999999999998 4 3 7999999988754321 1111 234699999999999
Q ss_pred eEEEEEEEcCCCceEEEEEE
Q psy574 357 GEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 357 G~Y~C~a~n~~G~~~~s~~l 376 (977)
|.|+|.|.|..|.......+
T Consensus 318 G~Y~C~a~n~~~~~~~~~~v 337 (444)
T 1igt_B 318 KEFKCKVNNKDLPAPIERTI 337 (444)
T ss_dssp CEEEEEEECTTCSSCEEEEE
T ss_pred CcEEEEEEcCCCCCceEEEE
Confidence 99999999999876433333
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=205.66 Aligned_cols=177 Identities=11% Similarity=0.143 Sum_probs=137.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-Cc--EEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GT--NLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g--~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.|.. +..+.+.+|+.+.|.|.+..+.|.+.|.|+|||+.|......++.... ++ +|.|.+++.+|+|.|+|.|.
T Consensus 3 ~p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~ 81 (207)
T 3rbs_A 3 DPFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 81 (207)
T ss_dssp ---CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred CCeeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 344544 447899999999999999666899999999999999655555555533 23 59999999999999999999
Q ss_pred ecCceeeeEeEEEEEE---------------------cCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCee
Q psy574 82 NVAGTRESTDAVLRVL---------------------VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSA 139 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~---------------------~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~ 139 (977)
|... . ....+.+. .+|.|...+ +..+.+|+++.|.|.+.|. |.|.|.|+|++..
T Consensus 82 Ng~a--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~ 157 (207)
T 3rbs_A 82 DGKA--T-NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE 157 (207)
T ss_dssp ETTE--E-EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred CCCe--E-EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE
Confidence 9432 2 22232211 267777665 5788999999999999998 9999999999998
Q ss_pred CCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 140 MPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 140 l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+..+ ++... ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|++.
T Consensus 158 l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 158 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp ECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 8653 32221 22469999999999999999999999999999888753
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=202.35 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=151.1
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--cCc--EEEEcCCCCCCCeEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGT--NLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~~g--~L~I~~v~~~D~G~Y~C~ 79 (977)
..|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ...++.+. .++ .|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCC-CSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECcc-CCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 35889999999999999999999999 7899999999999999853 33455443 344 899999999999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeC-----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---cc
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRG-----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PS 150 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~-----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~ 150 (977)
+.|..|.. +..+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.+. ..
T Consensus 81 ~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 2j8h_A 81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159 (197)
T ss_dssp EEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSE
T ss_pred EEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCc
Confidence 99988764 56788888877765433 3456788999999999999999999999999988754 344443 34
Q ss_pred ceEEEcc-CccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 151 RSLQLSD-VRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 151 ~~L~I~~-v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 6899999 99999999999999999999999999885
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=197.03 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=154.0
Q ss_pred cCCeEEeCCCceEEeC-CCeEEEEEEecccCc--eEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSA-SSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~-G~~v~l~C~v~g~p~--~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...+ ...+.+ |+++.|.|.+.+.|. +.+.|+|++..+...+... .+..|.|.+++.+|+|.|+|.+.|.
T Consensus 2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-
Confidence 467776644 556666 999999999988876 8999999999987654433 6688999999999999999999999
Q ss_pred eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE--cCeeeeecCCCccccEEEEEccCCceEE
Q psy574 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML--EGNRSLIYPGDRVDNIQAEITSDGMNLL 252 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~--~g~~~~~~~~~~~~~~~~~~~~~g~s~L 252 (977)
+.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++ ++..+.. .....++.+... .+...|
T Consensus 79 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~--~~~~~~~~~~~~-~~~~~L 155 (190)
T 2wv3_A 79 SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI--SNSSGRFFIINK-ENYTEL 155 (190)
T ss_dssp TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEEC--CCTTSCEEEEEC-SSEEEE
T ss_pred CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeee--ecCCCeEEEecC-CCeeEE
Confidence 88899999999999999998888899999999999999999999999999 5655432 224566666653 334689
Q ss_pred EEeecc-cCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 253 KIQNVS-RTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 253 ~I~~v~-~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|.+++ .+|+|.|+ |.|.|..|.....+.|.|+.
T Consensus 156 ~i~~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 156 NIVNLQITEDPGEYE-CNATNSIGSASVSTVLRVRV 190 (190)
T ss_dssp EECSCCTTTSCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEeccccCCCEEEE-EEEEecCCcceeEEEEEEEC
Confidence 999999 79999999 99999999999998888863
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=206.15 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=151.4
Q ss_pred EEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEee----------cCccceEEECCCCCCcEEEEE
Q psy574 549 LTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLH----------AGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~----------~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
++++..++.++|.|+|++| .++.+.+|.|+|+..+....|....... .....++.+.+|+|++.|.|+
T Consensus 7 ~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 86 (214)
T 2ibg_A 7 PPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFR 86 (214)
T ss_dssp CCEEEEEETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEE
T ss_pred CCEeeEecCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEE
Confidence 4566778999999999999 5578999999999987656776543211 124578999999999999999
Q ss_pred EEEeecceeCCCCC-ceEEeccCC---CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEE
Q psy574 617 LVPFFGSVDGKPSN-LRAVRTLEC---EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALIN 691 (977)
Q Consensus 617 V~a~n~~g~g~~s~-~~~~~T~~~---~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~ 691 (977)
|+|.|..|.|..+. ...+.+... .|..+|.++++...+.++|.|+|++|. +..++.|.+|.|+|+..+. ..+..
T Consensus 87 V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~ 165 (214)
T 2ibg_A 87 ILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFK 165 (214)
T ss_dssp EEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETTCCSCCEE
T ss_pred EEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCC-ccCCCCcceEEEEEEECCCCcceEE
Confidence 99999998877665 444555444 234478899988888899999999996 5788999999999998653 44444
Q ss_pred EEec-CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 692 MTVS-ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 692 ~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
..+. ...++++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|..
T Consensus 166 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 212 (214)
T 2ibg_A 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212 (214)
T ss_dssp EEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred eeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence 4444 346899999999999999999999999999999999998864
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=199.47 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=158.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEEEccC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTVTNLT 473 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i~~L~ 473 (977)
..|++|.++.+.. +.+++.|+|.++.+ +++.+.+|.|+|+...... .|.... .......+.+ +|.
T Consensus 4 ~~P~~P~~~~~~~-~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~----------~w~~~~~~~~~~~~~~~~-~L~ 70 (205)
T 1cfb_A 4 DVPNAPKLTGITC-QADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPA----------SWDAAYEKVPNTDSSFVV-QMS 70 (205)
T ss_dssp CCCCCCEEEEEEE-CSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTT----------CCEEEEEEEETTCSEEEE-ECC
T ss_pred cCCCCCCCcEEEe-cCCEEEEEEECccc-CCCceEEEEEEEecCCCCC----------CceeeeeccCCCceEEEE-eCC
Confidence 5689999999999 99999999999965 6788999999997654322 675443 2345567777 999
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.|..|.|.+|..+..+++....|.. ++.++++.
T Consensus 71 p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~------------------------------------~P~~~~~~ 114 (205)
T 1cfb_A 71 PWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFK------------------------------------NPDNVVGQ 114 (205)
T ss_dssp SSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSC------------------------------------CCSCCEEE
T ss_pred CCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCC------------------------------------CCeeeEee
Confidence 999999999999999999988656666664433311 12457788
Q ss_pred EeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC-
Q psy574 554 PMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP- 628 (977)
Q Consensus 554 ~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~- 628 (977)
..+.++|.|+|++| .++.+.+|+|+|+..+....|....+.. ...+++.|.+|.|++.|.|+|+|+|..|.|++
T Consensus 115 ~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s 193 (205)
T 1cfb_A 115 GTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD-WRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193 (205)
T ss_dssp CSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECC-TTCCEEEECSCCSSCEEEEEEEEEETTEECSSC
T ss_pred cCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecC-CCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCC
Confidence 88999999999998 4678999999999988766687766543 46789999999999999999999999999995
Q ss_pred CCceEEeccCCC
Q psy574 629 SNLRAVRTLECE 640 (977)
Q Consensus 629 s~~~~~~T~~~~ 640 (977)
|..+.++|.|++
T Consensus 194 s~~v~~~T~e~v 205 (205)
T 1cfb_A 194 AEEVVGYSGEDR 205 (205)
T ss_dssp CCCEEEESSSCC
T ss_pred CCcEEEecCCCC
Confidence 788999998864
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=223.37 Aligned_cols=257 Identities=16% Similarity=0.275 Sum_probs=175.1
Q ss_pred eCCCceEEeCCCeEEEEEEeccc--CceEEEEEEC--CeeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRL--GSAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~--~~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+. +.+.|.|+|+ +..+ ..+|+.+.. ..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS 84 (344)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence 34556789999999999999876 3678999997 3322 134666543 2589999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.|.|..+.....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|++++..+.
T Consensus 85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 164 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG 164 (344)
T ss_dssp SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence 999999999999999966555566788887 35566554444456799999999999986 54 6999999986531
Q ss_pred ec--CC--CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-------------------
Q psy574 231 IY--PG--DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG------------------- 287 (977)
Q Consensus 231 ~~--~~--~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~------------------- 287 (977)
.. .. ...+++... +.|.|.+++.+| |.|+ |.|.|..+.......+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~-C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 236 (344)
T 1za6_B 165 VHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGS 236 (344)
T ss_dssp EEECCCEECTTSCEEEE------EEEEEETTHHHH-BCEE-EEEEEGGGTEEEEEEECCCCC------------------
T ss_pred eeECCCeECCCCCEEEE------EEEEEcHHHcCC-CcEE-EEEEeCCCCccceEeecccccccccccCCCCCCcccccc
Confidence 11 00 112333332 289999999888 9999 99999988654443332110
Q ss_pred CCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C--ceEEEEECCEEcCCC--CcEEEecCce------EEEeccCCC
Q psy574 288 PDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E--GSVQWWRGEREVGSG--PRVNVTGDGS------LVLTDVTKE 354 (977)
Q Consensus 288 ~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~--p~i~W~~~g~~l~~~--~~~~~~~~~s------l~I~~v~~~ 354 (977)
.....+|.+.. .+....+ .|..+.|.|.+.+ + +.|.|++||..+... .+.....+++ |.|......
T Consensus 237 ~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~ 315 (344)
T 1za6_B 237 GGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 315 (344)
T ss_dssp --CCBCCEEEEECCCGGGG-GSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHH
T ss_pred CCCCcCCEEEEeCCChHhc-cCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHcc
Confidence 01123555443 3333333 4666999999998 2 379999999877543 2222234443 445555555
Q ss_pred CCeEEEEEEEcCCCc
Q psy574 355 DSGEYTCVVKSPHGS 369 (977)
Q Consensus 355 d~G~Y~C~a~n~~G~ 369 (977)
|.|.|+|.|.|....
T Consensus 316 ~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 316 QGNVFSCSVMHEALH 330 (344)
T ss_dssp TTCEEEEEEECTTST
T ss_pred CCCeEEEEEEcCCCC
Confidence 799999999997654
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=197.05 Aligned_cols=174 Identities=21% Similarity=0.372 Sum_probs=144.2
Q ss_pred cccceecccceEEeC-CCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAA-GDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~-G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
+|.+.. +....+.+ |++++|.|.+ .+.|. +.|.|+|+|..+.... +. ..++.|.|.+++.+|+|.|+|.+.
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~--~~--~~~~~L~i~~~~~~d~G~Y~C~~~ 76 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATR--KN--ASNMEYRINKPRAEDSGEYHCVYH 76 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCC--BC--CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccc--eE--eccEEEEEecCCcccCEEEEEEEE
Confidence 345555 44566777 9999999998 66666 8999999999984332 11 146789999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE--CCeeC----CCCceEEecc---ce
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR--LGSAM----PEDRMSVLPS---RS 152 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k--~~~~l----~~~~~~~~~~---~~ 152 (977)
|. +. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+ ..+++.+..+ +.
T Consensus 77 n~-~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 154 (190)
T 2wv3_A 77 FV-SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154 (190)
T ss_dssp ET-TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred eC-Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence 98 54 457789999999999988988999999999999999999999999999 66665 3455555433 37
Q ss_pred EEEccCc-cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 153 LQLSDVR-LEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 153 L~I~~v~-~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus 155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 9999999 699999999999999999888888875
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=204.76 Aligned_cols=193 Identities=28% Similarity=0.499 Sum_probs=150.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC---ceEEEecCcEEEE-----cCCCCCCCe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS---KRLRLVDGTNLAI-----QDSRKTDDG 74 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~---~r~~~~~~g~L~I-----~~v~~~D~G 74 (977)
...|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .+.....++.+.+ .+++.+|+|
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence 346888999999999999999999999 7889999999999999853321 1233334555444 556899999
Q ss_pred EEEEEEEecCceeeeEeEEEEEEc-CCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEEeccc
Q psy574 75 RYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSVLPSR 151 (977)
Q Consensus 75 ~Y~C~a~n~~g~~~s~~~~l~V~~-~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~~~~~ 151 (977)
.|+|.+.|..|...+..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+... ......++
T Consensus 86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 165 (212)
T 2v9r_A 86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG 165 (212)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT
T ss_pred EEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC
Confidence 999999998887666677888875 4566667788899999999999999 89999999999999988643 23334678
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEE-EEEEEEeeCCeEEecCC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISA-SATLTVQMAPIVRERPS 196 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~-~~~L~V~~~p~~~~~p~ 196 (977)
.|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+...|.
T Consensus 166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P~ 211 (212)
T 2v9r_A 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAA 211 (212)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhcc
Confidence 9999999999999999999999998655 48999999998877664
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-21 Score=219.37 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=185.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCC-----cccceEEEEEeecCCCCCCCCCCCCcccEEEece-ecCcCeEEE
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGS-----SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT-NVPSPILTV 469 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~-----~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~i 469 (977)
..|.||.++.+.... ..+.|+|.+|..... ...+.|.|+|+... . .|..... ......+.+
T Consensus 107 v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~-----------~w~~~~~~~~~~~~~~~ 173 (419)
T 2gys_A 107 VQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-D-----------SWEDAAILLSNTSQATL 173 (419)
T ss_dssp BCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-S-----------CSTTCEEEEESSSEEEE
T ss_pred ccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-C-----------ChhheeeecccceEEEe
Confidence 679999999988776 699999999876321 35689999999875 2 4543332 223455666
Q ss_pred E--ccCCCCeEEEEEEEEcCC---CCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCC
Q psy574 470 T--NLTVGLTYTFLVRALNSH---GLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGG 544 (977)
Q Consensus 470 ~--~L~p~t~Y~~~V~a~n~~---G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~ 544 (977)
. +|.|++.|.|+|+|.|.. +.|.+|.+|..+.... .+ . .+
T Consensus 174 ~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t-~~-~---------------------------------~~ 218 (419)
T 2gys_A 174 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDS-QP-G---------------------------------DE 218 (419)
T ss_dssp CTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEEC-CC-C---------------------------------CT
T ss_pred chhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeec-cc-c---------------------------------cc
Confidence 6 899999999999999964 4588898888877622 11 1 11
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCC----CCceEE-EE-eec-------CccceEEECCCCCC
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPP----ASVAML-TV-LHA-------GEASGFLVTGLAHY 610 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~----~~~~~~-~~-~~~-------~~~~~~~i~~L~p~ 610 (977)
..+.++.+...+.++|.+.|+++ ......+|.|+|+..... ..|... .. ... .....+.+.+|.++
T Consensus 219 ~~p~~l~c~~~~~~~l~c~W~~~~~~~~~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~ 298 (419)
T 2gys_A 219 AQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATH 298 (419)
T ss_dssp TSCEEEEEEECSSSEEEEEEEEEHHHHTTCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTC
T ss_pred CCCceEEEEECCceEEEeEEECCCCCCCceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCcc
Confidence 22478999999999999999998 111125699999876421 122211 11 110 11236778899999
Q ss_pred cEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-c-
Q psy574 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-A- 688 (977)
Q Consensus 611 t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~- 688 (977)
+.|.|+|.|.++.+. +.+.+.+.++|| .+.+.. +.+++.|+|++|.....+ .+++|+|+|+..+.. .
T Consensus 299 ~~y~i~V~a~~~~~~--------~~~~~~v~p~PP-~l~v~~-~~~~l~l~W~~P~~~~~~-~~l~Yev~y~~~~~~w~~ 367 (419)
T 2gys_A 299 GQYIVSVQPRRAEKH--------IKSSVNIQMAPP-SLQVTK-DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTATWKD 367 (419)
T ss_dssp CEEEEEEEECCCCEE--------EEGGGSBCCCCC-EEEEC----CCCEEEEEC---------CEEEEEEEECSSSCSTT
T ss_pred CEEEEEEEEccCCcc--------ccceEEEEECCC-CeEEEE-eCCeEEEEECCCcccccc-cceEEEEEEEcCCCCcce
Confidence 999999999765442 222222234466 455554 468899999999532233 578999999986532 1
Q ss_pred eEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC-----cCCCCCceEEee
Q psy574 689 LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG-----TGPYSRPALLSL 735 (977)
Q Consensus 689 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G-----~g~~S~~~~~~t 735 (977)
.....+. +.+++.|.+|+|++.|.|+|||.+.+| .|.||+++.+.|
T Consensus 368 ~~~~~~~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~~~~~t 418 (419)
T 2gys_A 368 SKTETLQ-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT 418 (419)
T ss_dssp SCEEEEE-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCCEECCC
T ss_pred eeccccc-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCCeEeeC
Confidence 1122233 678999999999999999999999863 347888888865
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=224.49 Aligned_cols=246 Identities=17% Similarity=0.234 Sum_probs=165.5
Q ss_pred CeEEEEEEeccc-C-ceEEEEEECCeeCCCCceE---Eecc------ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 115 SIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---VLPS------RSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 115 ~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~~~---~~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+++.|.|.+.|. | .+.|.|+|+|..+..+... ...+ ..|.|.++..+|+|.|+|.|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 699999999875 4 5799999999988643211 1112 357788888889999999999988766554433
Q ss_pred EEe---eCCeE-EecCCCcEEeeCCeEEEEEEEecC-CCC---eEEEEEcCeeeeecCC-----CccccEEEEEccCCce
Q psy574 184 TVQ---MAPIV-RERPSDLRLEVGRDAVFLCGIEGS-PPP---STFWMLEGNRSLIYPG-----DRVDNIQAEITSDGMN 250 (977)
Q Consensus 184 ~V~---~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~-p~~---~i~W~~~g~~~~~~~~-----~~~~~~~~~~~~~g~s 250 (977)
.+. ..|.+ ...|....+.+|+.++|.|.+.+. |.+ .|.|++++........ ...+++. ..+
T Consensus 105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~------~~~ 178 (323)
T 2wqr_A 105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT------VTS 178 (323)
T ss_dssp CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE------EEE
T ss_pred CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE------EEE
Confidence 111 23433 445555678899999999999885 555 8999997643321100 0111222 123
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-CCCCCCeEEeCCCceeecCCCcEEEEEEEcc--C--ceEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEARLRCQVRG--E--GSVQW 325 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~--p~i~W 325 (977)
.|.|.+++.+|.|.|+ |.|.|..+.... .+.|... ....+|.+...+.......|+.++|.|.+.+ + +.|.|
T Consensus 179 ~L~I~~~~~~D~G~Y~-C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 255 (323)
T 2wqr_A 179 TLPVGTRDWIEGETYQ-CRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQW 255 (323)
T ss_dssp EEECCHHHHHTTCCEE-EEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred EEEECHHHccCCCCEE-EEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEE
Confidence 8999999999999999 999998754433 3333221 1122555443222222233999999999988 2 26999
Q ss_pred EECCEEcCCCCcE----EEecC------ceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 326 WRGEREVGSGPRV----NVTGD------GSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 326 ~~~g~~l~~~~~~----~~~~~------~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
+++|..+...... ....+ +.|.|..+...|.|.|+|.|.|..+.
T Consensus 256 ~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 256 LHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 9999988543111 11122 35889999888999999999998876
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=195.52 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=155.8
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEe---ccceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL---PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. ....|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 4678888899999999999999999999999999999999888653 33332 23589999999999999999999
Q ss_pred eCCeeEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 172 NAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 172 n~~g~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
|..+.....+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+... ++
T Consensus 84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~-~~ 157 (194)
T 2a38_A 84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ-----SSLDFQISQE-GD 157 (194)
T ss_dssp ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC-----CSSSEEEEEE-TT
T ss_pred cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC-----CCCcEEEEEc-CC
Confidence 999988888899998 67788888888899999999999999999999999999998763 3345555443 34
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 158 ~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 158 LYSLLIAEAYPEDSGTYS-VNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEEEECGGGCEEEE-EEEEETTEEEEEEEEEEEC
T ss_pred EEEEEECCCChhcCeEEE-EEEEeCCCceEEEEEEEEC
Confidence 468999999999999999 9999999998888888773
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=204.66 Aligned_cols=166 Identities=15% Similarity=0.152 Sum_probs=129.2
Q ss_pred cceEEeCCCcEEEEEEC--CCCCCCCeEEEEeCCEEee---------------cCCCceEEEec---CcEEEEcCCCCCC
Q psy574 13 KSQRVAAGDTALLECGP--PRGHPEPTLVWKKNGHPID---------------FENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~--~~g~P~~~v~W~k~g~~l~---------------~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+++++..|++++|.|.. ..+.|.+.|.|+|+|..+. .....++.+.. ...|.|.+++.+|
T Consensus 1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (203)
T 4fa8_A 1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 80 (203)
T ss_dssp -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence 35889999999999953 2688999999999874321 01122233221 2469999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-----CCceEE
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-----EDRMSV 147 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~-----~~~~~~ 147 (977)
+|.|+|.|.|..|.. +..+.|.|..||.+...+.+..+.+|+++.|.|.+.|.|.|.|.|+++++.+. ..++.+
T Consensus 81 ~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 81 DGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp CEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred CeEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 999999999988874 45689999999999888888899999999999999999999999999876553 345666
Q ss_pred eccceEEE---ccCccCCCeEEEEEEEeCCeeEEE
Q psy574 148 LPSRSLQL---SDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 148 ~~~~~L~I---~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
..+++|.| .++..+|+|.|+|.|.|..|..++
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 67776555 689999999999999999998765
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=198.02 Aligned_cols=187 Identities=27% Similarity=0.444 Sum_probs=156.4
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-----ccceEEEccC-ccCCCeEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSLQLSDV-RLEDAGEYVCEA 170 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-----~~~~L~I~~v-~~~D~G~Y~C~a 170 (977)
..+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+...+.... ....|.|.++ +.+|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 4678899999999999999999999999999999999999999987765543 2356999999 599999999999
Q ss_pred EeCCeeEEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 171 ENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
.|..|.....+.|.|..+ |.+...|....+.+|+.++|.|.+.|.|.+.+.|++++..+... ....++...
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~--~~~~~~~~~ 161 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS--NNNGRIKQL 161 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC--------CCEEEE
T ss_pred EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc--CCCceEEEE
Confidence 999999888999999854 67777888889999999999999999999999999999876432 123455544
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.. .+...|.|.+++.+|+|.|+ |.|.|..|... ..+.|.|..
T Consensus 162 ~~-~~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 162 RS-ESIGALQIEQSEESDQGKYE-CVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp EE-TTEEEEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred ec-CCeEEEEEcCCCcccCEEEE-EEEECCCCccccccccEEEEe
Confidence 32 23469999999999999999 99999999874 457788876
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=228.89 Aligned_cols=264 Identities=17% Similarity=0.257 Sum_probs=180.8
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ..+|+.+.. ..+|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 34567899999999999998775 6789999852 21 1 124665543 24799999
Q ss_pred CccCCCeEEEEEEEeCCe------------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CC-Ce
Q psy574 158 VRLEDAGEYVCEAENAVG------------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PS 219 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g------------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~ 219 (977)
++.+|+|.|+|.+.|..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |. +.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 165 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence 999999999999998765 233456777764 5666655555567899999999999987 64 79
Q ss_pred EEEEEcCeeeeecC----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCC------
Q psy574 220 TFWMLEGNRSLIYP----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD------ 289 (977)
Q Consensus 220 i~W~~~g~~~~~~~----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~------ 289 (977)
+.|++++..+.... ....+++... +.|.|.+++.+| |.|+ |.|.|..+.......+.+....
T Consensus 166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~-C~a~n~~~~~~~~~~v~~~~~~~~~~~~ 237 (457)
T 1hzh_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKKAEPKSCDKTHTCP 237 (457)
T ss_dssp EEETTTTBCTTEEEEEEEECTTSCEEEE------EEEEECSGGGGT-SCCE-EEEEEGGGTEEEEEECCCCCSCSSCSCC
T ss_pred EEEEeCCEeccceEcCceECCCCCEEEE------EEEEecccccCC-ceEE-EEEEeCCCCcceeEEecccCCCcccccC
Confidence 99999986431100 0011222221 379999999999 9999 9999988776555554443210
Q ss_pred ------CCCCCeE-EeCCCcee-ecCCCcEEEEEEEcc-Cc-----eEEEEECCEEcCCCCc--EEEecCceEEEecc--
Q psy574 290 ------PNPPPVI-LFGPANQT-LPLRSEARLRCQVRG-EG-----SVQWWRGEREVGSGPR--VNVTGDGSLVLTDV-- 351 (977)
Q Consensus 290 ------~~~pp~i-~~~p~~~~-v~~g~~~~L~C~~~~-~p-----~i~W~~~g~~l~~~~~--~~~~~~~sl~I~~v-- 351 (977)
...+|.+ ..+|.... +..|+.+.|.|.+.+ +| .|.|++++..+..... .....++.+.+...
T Consensus 238 ~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 317 (457)
T 1hzh_H 238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 317 (457)
T ss_dssp SCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEE
Confidence 0114554 55555443 678999999999999 33 8999999988754321 12234566665532
Q ss_pred -CCCC---CeEEEEEEEcCCCceEEEEEE
Q psy574 352 -TKED---SGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 352 -~~~d---~G~Y~C~a~n~~G~~~~s~~l 376 (977)
...| .|.|+|.|.|..+.......+
T Consensus 318 i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 318 VLHQDWLNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred ECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence 2445 999999999876655434333
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=203.52 Aligned_cols=182 Identities=30% Similarity=0.510 Sum_probs=151.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEE----EEcCCCCCCCeEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNL----AIQDSRKTDDGRY 76 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L----~I~~v~~~D~G~Y 76 (977)
...|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|||..+.... ..++.+. ++.+ .|.+++.+|+|.|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECT-TSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEec-CCceEEEEEeccCCcccCceE
Confidence 456889999999999999999999999 788999999999999986432 2344433 4444 6889999999999
Q ss_pred EEEEEecCceeeeEeEEEEEEc-CCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---------CCce
Q psy574 77 QCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---------EDRM 145 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~-~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---------~~~~ 145 (977)
+|.+.|..|...+..+.|.|.. +|.+...|....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ..++
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~ 164 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence 9999998887666667788775 5677777888899999999999999 899999999999998876 2455
Q ss_pred EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 146 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.+..++.|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 55677899999999999999999999999987766555554
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=196.59 Aligned_cols=180 Identities=19% Similarity=0.359 Sum_probs=150.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a 80 (977)
-.|.|...|.++.+.+|+.++|.|.+ .+.|.+.+.|+|++..+... .++.+..++ +|.|.+++.+|+|.|+|.+
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQS--RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCC--SSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCC--ccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 46788899999999999999999999 78899999999999999543 455555454 7999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeC---CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEecc---ceE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRG---PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL 153 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~---p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~---~~L 153 (977)
.|..|.. ...+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++.+... ..|
T Consensus 83 ~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L 161 (197)
T 3lcy_A 83 TNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL 161 (197)
T ss_dssp ECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred ECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEE
Confidence 9888764 45578888877766543 35567889999999999999999999999999988654 4444333 689
Q ss_pred EEccCcc-CCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 154 QLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 154 ~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.|.++.. +|+|.|+|.|.|..|..+..+.|.|..
T Consensus 162 ~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 162 VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 9999994 899999999999999999999988863
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=201.43 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=148.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.+.|.+.|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+... .++.|.|.+++.+|+|.|+|.+.|..
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~ 88 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNNF 88 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred CCEEEECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcCC
Confidence 3678889999999999999999999 88999999999999998432 25789999999999999999999988
Q ss_pred ceeeeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEec
Q psy574 85 GTRESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP 149 (977)
Q Consensus 85 g~~~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~ 149 (977)
|...+..+.|.|... |.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .
T Consensus 89 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----~ 163 (218)
T 3k0w_A 89 TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----T 163 (218)
T ss_dssp CCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----C
T ss_pred CCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----C
Confidence 866677788888865 67888888899999999999999999999999999999988754 3
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP 189 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p 189 (977)
...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 468999999999999999999998887 5667888887533
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=196.21 Aligned_cols=183 Identities=22% Similarity=0.297 Sum_probs=154.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe--ccc--eEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL--PSR--SLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~--~~~--~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+... ++.+. .++ .|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4788999999999999999999999999999999999999988643 44433 233 89999999999999999999
Q ss_pred eCCeeEEEEEEEEEeeCCeEEecC-----CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 172 NAVGKISASATLTVQMAPIVRERP-----SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 172 n~~g~~~~~~~L~V~~~p~~~~~p-----~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
|..|..+..+.|.|..+|.+...+ ....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~- 156 (197)
T 2j8h_A 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-----NNGHYQVIVT- 156 (197)
T ss_dssp ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC-----SSSSCEEEEC-
T ss_pred ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee-----cCCCEEEEEc-
Confidence 999999999999999877764432 34578889999999999999999999999998764 3345555443
Q ss_pred CCceEEEEee-cccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 247 DGMNLLKIQN-VSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 247 ~g~s~L~I~~-v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.+...|.|.+ +..+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 157 ~~~~~L~i~~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 157 RSFTSLVFPNGVERKDAGFYV-VCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp SSEEEEECTTCCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCceEEEEeCCCCcccCEeEE-EEEEeCCCcEeEEEEEEEeC
Confidence 2346999999 9999999999 99999999998888888863
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=197.69 Aligned_cols=181 Identities=28% Similarity=0.426 Sum_probs=146.6
Q ss_pred ccce-ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceE-EEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 6 EEFR-VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRL-RLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 6 ~~~~-~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~-~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+.|. ..+.++.+.+|+.++|.|.+..+.|. +.|.|+|++..+....+.+. ....+++|.|.+++.+|+|.|+|.+.+
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence 3444 45578999999999999993378888 99999999988854333343 444578899999999999999999999
Q ss_pred cCceeee--EeEEEEEE-------cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceE
Q psy574 83 VAGTRES--TDAVLRVL-------VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSL 153 (977)
Q Consensus 83 ~~g~~~s--~~~~l~V~-------~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L 153 (977)
..+.... ..+.+.+. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.........+..|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L 167 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVL 167 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEE
T ss_pred cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEE
Confidence 7654432 33444443 35666666668899999999999999999999999999999887654444567899
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 168 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 168 KIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 999999999999999999999999999999885
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=225.71 Aligned_cols=251 Identities=15% Similarity=0.216 Sum_probs=169.7
Q ss_pred eCCCcEEEEEECCCCCCC-C-eEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 18 AAGDTALLECGPPRGHPE-P-TLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~-~-~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+|+.++|.|.+....|. + .|.|+|++..+... .++++.+ .+.|.|..++.+|+|.|+|.|.|..+..
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 216 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS 216 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEE--EEEEEechhHcCCCceEEEEEEECCCCc
Confidence 689999999999433466 5 99999998643211 1122222 2358999999999999999999987643
Q ss_pred eeEeEEEEEE------------------cCCeE-EeCCCceEEeCCCeEEEEEEecccCc---eEEEEEECCeeCCCC--
Q psy574 88 ESTDAVLRVL------------------VKPYI-IRGPKDTTVSASSIIVFECSVGGDAV---LTVHWKRLGSAMPED-- 143 (977)
Q Consensus 88 ~s~~~~l~V~------------------~~P~~-~~~p~~~~v~~G~~v~l~C~v~g~p~---~~i~W~k~~~~l~~~-- 143 (977)
.+..+.|.|. .+|.+ ...|....+.+|+++.|.|.+.|.++ +.|.| ++..+...
T Consensus 217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~ 294 (475)
T 1iga_A 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQ 294 (475)
T ss_pred eeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccc
Confidence 3333443331 24544 44444445689999999999987644 69999 44333211
Q ss_pred -ce------EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE---EeeCCeEEecCCC-cEEeeCCeEEEEEEE
Q psy574 144 -RM------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT---VQMAPIVRERPSD-LRLEVGRDAVFLCGI 212 (977)
Q Consensus 144 -~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~---V~~~p~~~~~p~~-~~v~~G~~v~L~C~~ 212 (977)
.. .....+.|.|.++..+|+|.|+|.|.|..+.......|. +..+|.+...+.. ..+.+|+.++|.|.+
T Consensus 295 ~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~ 374 (475)
T 1iga_A 295 GPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA 374 (475)
T ss_pred cCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE
Confidence 00 011345799999999999999999999888754444553 3577877665544 357899999999999
Q ss_pred ecCCC--CeEEEEEcCeeeeecCCCccccEEEEEc---cCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 213 EGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEIT---SDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 213 ~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~---~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.++ +.|.|+|+|..+.... ......... .+|. +.|.|......|.|.|+ |.|.|....
T Consensus 375 ~g~~P~~~~v~W~k~g~~l~~~~---~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~Yt-C~a~n~~l~ 443 (475)
T 1iga_A 375 RGFSPKDVLVRWLQGSQELPREK---YLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFS-CMVGHEALP 443 (475)
T ss_pred eeeECCCCEEEEEECCEECCCCc---eeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEE-EEEEcCCCC
Confidence 98643 4899999998763210 000000111 1221 36888888888999999 999998654
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=196.31 Aligned_cols=181 Identities=29% Similarity=0.577 Sum_probs=155.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC--CCceEEe--cc--ceEEEccCcc-CCCeEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVL--PS--RSLQLSDVRL-EDAGEYVCEA 170 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~--~~~~~~~--~~--~~L~I~~v~~-~D~G~Y~C~a 170 (977)
.+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+. ..++.+. .+ ..|.|.+++. +|+|.|+|.+
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 57899999999999999999999999999999999999999885 4555553 22 5899999999 9999999999
Q ss_pred EeCCee-EEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEE
Q psy574 171 ENAVGK-ISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242 (977)
Q Consensus 171 ~n~~g~-~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~ 242 (977)
.|..|. .+..+.|.|..+ |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++..
T Consensus 85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~----~~~~~~~ 160 (212)
T 2yd1_A 85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM----SNPRYSL 160 (212)
T ss_dssp ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCT----TSTTEEE
T ss_pred EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEccc----CCCeEEc
Confidence 999988 788899999865 7788888888999999999999999999999999999987642 2334433
Q ss_pred EEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECC
Q psy574 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGP 288 (977)
Q Consensus 243 ~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~ 288 (977)
. ++ .|.|.+++.+|+|.|+ |.|.|..|..... +.|.|+..
T Consensus 161 ~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 161 K---DG--FLQIENSREEDQGKYE-CVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp E---TT--EEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-
T ss_pred c---CC--eEEEccCChhhCEEEE-EEeecCCCceeEEEEEEEEEec
Confidence 3 34 9999999999999999 9999999988765 79999873
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=192.25 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=150.7
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--C-CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEe
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--N-TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF 620 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~-~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 620 (977)
+.+|.++++...+.++|.|+|++| . +..+.+|.|+|+..+ ...|...... ...+++.+.+|.|++.|.|+|+|.
T Consensus 6 P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~a~ 82 (197)
T 3lpw_A 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKREST-RKAYSTVATN--CHKTSWKVDQLQEGCSYYFRVLAE 82 (197)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETT-CSSCEEEEEE--ECSSEEEECCCCTTCEEEEEEEEE
T ss_pred CCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECC-CCccEEeecC--CCccEEEEcCCCCCCEEEEEEEEE
Confidence 344578999999999999999998 3 335899999999876 4566655443 467899999999999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCC-eeeeEEEEEEEecCCcceEEEEecCCcC
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN-GVIRTYQIIVGGGNNSALINMTVSASTP 699 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~n-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~ 699 (977)
|..|.+.++....+.|...+|. +|.++++...+.+++.|+|++| ...+ +.+.+|.|+|+..+...+.. ......+
T Consensus 83 ~~~g~~~~s~~~~~~t~~~~p~-~p~~~~~~~~~~~~v~l~W~~p--~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~ 158 (197)
T 3lpw_A 83 NEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKP--EHDGGSRILGYIVEMQTKGSDKWAT-CATVKVT 158 (197)
T ss_dssp ETTEECCCEECSSCEESCCCCC-CCSCEEEEEECSSCEEEEECCC--SCCTTSCCCEEEEEEEETTCSCCEE-EEEESSS
T ss_pred cCccccCCCCCccceecCCCCC-CCcccEEEeccCCeEEEEecCC--CcCCCCcccEEEEEEEeCCCCceEE-eeccccc
Confidence 9999998887777778887776 8889999888999999999998 4444 48999999999865333322 2344688
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
++++.+|+|++.|.|+|+|.|.+|.|++|.+...
T Consensus 159 ~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~ 192 (197)
T 3lpw_A 159 EATITGLIQGEEYSFRVSAQNEKGISDPRQLSVP 192 (197)
T ss_dssp EEEECCCCTTCEEEEEEEEEETTEECCCEECSSC
T ss_pred EEEeCCcCCCCEEEEEEEEEeCCccCCCccCccc
Confidence 9999999999999999999999999998876533
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=198.57 Aligned_cols=169 Identities=19% Similarity=0.301 Sum_probs=138.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCe-EEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~-v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-+|.+.+.|.+..+.+|++++|.|.+ .+.|.+. |.|+|||..+... .+.|.|.+++.+|+|.|+|.+.|
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n 75 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQL 75 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETT
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCC
Confidence 46788899988999999999999999 6777665 9999999998432 27899999999999999999987
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCCceEEeccceEEEccCccC
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
. ..+..+.|.|..+|.+...+. ..+.+|++++|.|.+.+. |.+.|.|+|++..+.. ...+..|.|.+++.+
T Consensus 76 ~---~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i~~v~~~ 147 (204)
T 3sgj_C 76 S---TLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYIPKATLK 147 (204)
T ss_dssp S---BCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGG
T ss_pred C---cccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEECcCCcc
Confidence 4 335668899998888777665 778899999999999554 6789999999987632 224678999999999
Q ss_pred CCeEEEEEEEeC-CeeEEEEEEEEEeeCCe
Q psy574 162 DAGEYVCEAENA-VGKISASATLTVQMAPI 190 (977)
Q Consensus 162 D~G~Y~C~a~n~-~g~~~~~~~L~V~~~p~ 190 (977)
|+|.|+|.|.|. .+..+..+.|.|..+|.
T Consensus 148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 148 DSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred cCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 999999999994 44567788888886553
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=218.72 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=195.8
Q ss_pred CCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 293 pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
+..+...|.+..+..|++++|.|.+. .+.|.|+++|..+... ++ ....+.|+|.++...|.|.|.|.+.+ +....
T Consensus 203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~-~~~I~W~~ng~~i~~~-ri-~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~ 277 (488)
T 2q7n_A 203 NTETNVFPQDKVVLAGSNMTICCMSP-TKVLSGQIGNTLRPLI-HL-YGQTVAIHILNIPVSENSGTNIIFIT--DDDVY 277 (488)
T ss_dssp CSSCCEECTTCEEESSCCCEEEECCS-SCEEEEEETTEECCCE-EC-SSSCEEEECCSCCCCCSSCEEEEEEE--SSCEE
T ss_pred CCceEECCCCCEEcCCCCEEEEEECC-CCEEEEEECCEECchh-hc-cceEEEEEEeCCCcccCCcEEEEEEc--CCeEE
Confidence 34445567788899999999999999 6899999999887543 21 12335699999999988888887763 23344
Q ss_pred EEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCC--CCcccceEEEEEeecCCCCCCCCCCC
Q psy574 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQI--GSSSLLGYQVEMYSRPLPSSSPSGDT 450 (977)
Q Consensus 373 s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~--~~~~i~~Y~I~~~~~~~~~~~~~~~~ 450 (977)
.+.+.+. .+|++|.++.+...+..++.|+|.++.+. ++..+..|.|+|+..+...
T Consensus 278 ~~~l~v~----------------~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~------- 334 (488)
T 2q7n_A 278 GTVVFAG----------------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA------- 334 (488)
T ss_dssp EEEEEEE----------------CCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEE-------
T ss_pred EEEEEee----------------CCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCC-------
Confidence 6777776 45889999999988889999999998873 2356899999997543211
Q ss_pred CcccEEEecee-cCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCc
Q psy574 451 ATATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRG 529 (977)
Q Consensus 451 ~~~~w~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g 529 (977)
.|...... .....+.+..+...+.|.|+|.|.|..|.+. | .+.+ .......|
T Consensus 335 ---~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S----~~~~-~~~~~v~P------------------ 387 (488)
T 2q7n_A 335 ---VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S----AVVI-NVTERVAP------------------ 387 (488)
T ss_dssp ---EEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E----EEEC-CGGGTBCC------------------
T ss_pred ---CCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c----eEEE-EecCCCCC------------------
Confidence 33322211 2234455654444699999999999988742 2 1222 11111122
Q ss_pred chHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceE--EEC
Q psy574 530 ESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGF--LVT 605 (977)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~--~i~ 605 (977)
.+|.++++...+++++.|+|++| .++.+.+|.|+|+..+. ..|.............+ .|.
T Consensus 388 ---------------~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~~-~~w~~~~~~~~~~~~~~~v~l~ 451 (488)
T 2q7n_A 388 ---------------HDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANS-KKEVRNATIRGAEDSTYHVAVD 451 (488)
T ss_dssp ---------------CCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCTTS-CCEEEEEEEECCEEEEEEEEEC
T ss_pred ---------------CCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEECCC-CCceEEEEEecCCCcEEEEEeC
Confidence 23378899999999999999999 56778999999998763 45532211111123455 999
Q ss_pred CCCCCcEEEEEEEEeeccee---CCCCCceEEeccCCC
Q psy574 606 GLAHYSRYEFFLVPFFGSVD---GKPSNLRAVRTLECE 640 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~---g~~s~~~~~~T~~~~ 640 (977)
+|+|++.|.|+|+|.+ .|. |++|..+.++|.+++
T Consensus 452 ~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~a 488 (488)
T 2q7n_A 452 KLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEAT 488 (488)
T ss_dssp SCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCCC
T ss_pred CCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCCC
Confidence 9999999999999999 887 577888889888753
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=195.19 Aligned_cols=196 Identities=23% Similarity=0.306 Sum_probs=159.8
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEecee------------cCcC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN------------VPSP 465 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~------------~~~~ 465 (977)
+.||.++.+..++.+++.|+|.++.. .++.+.+|.|+|+...... .|...... ....
T Consensus 2 ~~pP~~~~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~~ 70 (214)
T 2ibg_A 2 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRK----------NWQTTNDNIPYGKPKWNSELGKSF 70 (214)
T ss_dssp CCCCCCCEEEEEETTEEEEEEEEECC-SSCCEEEEEEEEEESSSSC----------CCEECSCCEECCSSSCSSSSEEEE
T ss_pred CCCCCCCEeeEecCCEEEEEEECCCC-CCCCceEEEEEEEECCCCC----------cCcccccccCccccccccccCcce
Confidence 46788888899999999999999887 4578999999999865433 77766521 3456
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCc
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGS 545 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~ 545 (977)
.+++.+|.|++.|.|+|+|.|..|.+.+|..+..+.+....+... +.
T Consensus 71 ~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~---------------------------------~~ 117 (214)
T 2ibg_A 71 TASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP---------------------------------MP 117 (214)
T ss_dssp EEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCC---------------------------------CC
T ss_pred eEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCC---------------------------------CC
Confidence 788999999999999999999999998887777666633322111 22
Q ss_pred eEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
++.++++...+.++|.|+|++| .++.+.+|.|+|+..+....|....+.. ...++++|.+|+|++.|.|+|+|+|.
T Consensus 118 ~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~ 196 (214)
T 2ibg_A 118 VPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG-AHARSFKIAPLETATMYEFKLQSFSA 196 (214)
T ss_dssp CCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC-TTCCEEEECSCCTTCEEEEEEEEECS
T ss_pred CCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccC-CcceEEEeCCCCCCCEEEEEEEEEcC
Confidence 3467889999999999999998 5678999999999887556787766553 45689999999999999999999999
Q ss_pred ceeCCCCCceEEeccC
Q psy574 623 SVDGKPSNLRAVRTLE 638 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~ 638 (977)
.|.|++|..+.++|.+
T Consensus 197 ~G~g~~S~~~~~~T~~ 212 (214)
T 2ibg_A 197 ASASEFSALKQGRTQR 212 (214)
T ss_dssp SCBCCCCCCEEEECCC
T ss_pred CccCCCcceEeeEecC
Confidence 9999999999999975
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=194.46 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=144.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----------------cCCCceEEEecCcEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------------FENSKRLRLVDGTNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----------------~~~~~r~~~~~~g~L~I~~v~ 69 (977)
++.++|..+.+.+|++++|.|.. .+.|.+.|.|+|++.... ....+|+.+..+++|.|.+++
T Consensus 1 ~~~i~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~ 79 (208)
T 3r4d_A 1 EVTIEAVPPQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT 79 (208)
T ss_dssp CCEEEEESSEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCC
T ss_pred CccccCccceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccc
Confidence 36788888999999999999997 778889999999753221 123557778888899999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-Cce
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRM 145 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~ 145 (977)
.+|+|.|+|.+.+..+...+..+.|.|..+ |.+...+.. +.+|+.+.|.|.+.+.| +.|.|++++..+.. .++
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~ 156 (208)
T 3r4d_A 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERM 156 (208)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSE
T ss_pred ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCe
Confidence 999999999999986656667788888865 555555544 88999999999998876 79999999998865 345
Q ss_pred EEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeE
Q psy574 146 SVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIV 191 (977)
Q Consensus 146 ~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~ 191 (977)
.+. .+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..+|.+
T Consensus 157 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 157 TLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204 (208)
T ss_dssp EEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred EEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence 554 3478999999999999999999999997 456788888877764
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=190.40 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=144.2
Q ss_pred eEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 546 LIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+|.++++..++.++|.|+|++|.++.+.+|+|+|+..+....+....+ ....+++.|.+|.|++.|.|+|+|.|..|.
T Consensus 25 ~P~~l~~~~~~~~sv~lsW~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~ 102 (203)
T 2gee_A 25 QPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVYTVKNGGE 102 (203)
T ss_dssp CCEEEEEECCTTTCEEEEEECCSSSSCCEEEEEEEESSSSSCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEESSSCB
T ss_pred CCCccEEEecCCCEEEEEecCCCCCCccEEEEEEEECCCCCCceeEEc--CCCccEEEeCCCCCCCEEEEEEEEEeCCCc
Confidence 468899999999999999999977789999999998875433333332 257789999999999999999999998776
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~ 704 (977)
+. ...+.+...+| +|.++++...+.+++.|+|++|+ ++.|.+|.|+|+..+ ........+.+..++++|.
T Consensus 103 s~---~~~~~t~~~~p--~P~~l~~~~~~~~sv~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (203)
T 2gee_A 103 ST---PTTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 173 (203)
T ss_dssp CC---CEEEEEECCCC--CCEEEEEEEEETTEEEEEEECCS----SCCCSEEEEEEEETTCGGGCEEEEECTTCCEEEEC
T ss_pred cc---cEeeeecCCCc--CCCceEEEEcCCCEEEEEEcCCC----CCCccEEEEEEEECCCCCccEEEEcCCCcCEEEEC
Confidence 54 34566666666 78999999999999999999993 468999999999854 4445566778889999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCC
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSR 729 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~ 729 (977)
+|+|++.|.|+|+|+|.+|.|+++.
T Consensus 174 ~L~p~t~Y~~~V~A~~~~g~s~p~~ 198 (203)
T 2gee_A 174 NLLPGTEYVVSVSSVYEQHESTPLR 198 (203)
T ss_dssp SCCTTCEEEEEEEEEETTEECCCEE
T ss_pred CCCCCCEEEEEEEEecCCCcCCCee
Confidence 9999999999999999999887543
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=198.71 Aligned_cols=179 Identities=22% Similarity=0.389 Sum_probs=147.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe----------ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l----------~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
..|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+ ......|+.+. ++.|.|.+++.+|+|.
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGE 79 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeE
Confidence 457788899999999999999999 67899999999987653 22334567766 4899999999999999
Q ss_pred EEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEE-ecccCceEEEEEECCe-eCCCC---------
Q psy574 76 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS-VGGDAVLTVHWKRLGS-AMPED--------- 143 (977)
Q Consensus 76 Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~-v~g~p~~~i~W~k~~~-~l~~~--------- 143 (977)
|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|. +.|.|.+.+.|+|++. .+...
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~ 159 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence 99999998762 235678899999988777676778999999999999 6999999999999999 77642
Q ss_pred -ceEE-eccceEEEccCccCCCeEEEEEEEeCCeeE--EEEEEEEEe
Q psy574 144 -RMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTVQ 186 (977)
Q Consensus 144 -~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~L~V~ 186 (977)
++.. ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 2222 246789999999999999999999999976 456666665
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=200.03 Aligned_cols=180 Identities=24% Similarity=0.396 Sum_probs=143.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC----CCeEEEEe----------------CCEEeec---CCCceEEEec-----
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKK----------------NGHPIDF---ENSKRLRLVD----- 59 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k----------------~g~~l~~---~~~~r~~~~~----- 59 (977)
+...+..+.+.+|++++|.|.+ .+.| .+.|.|+| ++..+.. ...+|+.+..
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 81 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKS 81 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGG
T ss_pred eecCCceEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccC
Confidence 4556778999999999999998 5555 46999998 5555521 2245777754
Q ss_pred -CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECC
Q psy574 60 -GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLG 137 (977)
Q Consensus 60 -~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~ 137 (977)
+++|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.+.|.|+|++
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~ 160 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS 160 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred CcccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence 4679999999999999999999987754 56789999998887766666668899999999999 89999999999964
Q ss_pred e--eCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 138 S--AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 138 ~--~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
. .+.........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..||
T Consensus 161 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~ 214 (214)
T 3jz7_A 161 DSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214 (214)
T ss_dssp TTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred CCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence 3 333322222356799999999999999999999999999999999988554
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-23 Score=234.65 Aligned_cols=259 Identities=17% Similarity=0.286 Sum_probs=182.3
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEecc-----ceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~~L~I~ 156 (977)
..+....+.+|++++|.|.+.+.+ .+.|.|+|++ ..+ ..+|+.+..+ .+|.|.
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS 83 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence 456677899999999999998763 6789999973 211 1245555432 479999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.+.|..+.....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..+.
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9999999999999998654444556788863 4555443333445899999999999886 766 999999987531
Q ss_pred ecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC--------CCCCCCeEEeC
Q psy574 231 IYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP--------DPNPPPVILFG 299 (977)
Q Consensus 231 ~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~--------~~~~pp~i~~~ 299 (977)
..... ..+.+... +.|.|.+++.+| |.|+ |.|.|..+.......+.+... ....|..+..+
T Consensus 164 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~ 235 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLS------SSVTVPSSPRPS-ETVT-CNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFP 235 (434)
T ss_dssp EEECCCEECSSCEEEE------EEEEEETTTTTS-SCCE-EEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred eEecCceecCCcEEEE------EEEEEcchhcCC-CcEE-EEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence 11000 01233322 379999999889 9999 999999998655555544310 01114444555
Q ss_pred CCcee-ecCCCcEEEEEEEcc-Cc-----eEEEEECCEEcCCCCcE--EE------ecCceEEEeccCCCCCeEEEEEEE
Q psy574 300 PANQT-LPLRSEARLRCQVRG-EG-----SVQWWRGEREVGSGPRV--NV------TGDGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 300 p~~~~-v~~g~~~~L~C~~~~-~p-----~i~W~~~g~~l~~~~~~--~~------~~~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
|.... +..|+.+.|.|.+.+ .| .|.|++++..+...... .. ...+.|.|..+...|.|.|+|.|.
T Consensus 236 p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 315 (434)
T 1igy_B 236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN 315 (434)
T ss_dssp CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred CChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence 54443 889999999999999 32 79999999876432110 00 123469999999999999999999
Q ss_pred cCCCce
Q psy574 365 SPHGSA 370 (977)
Q Consensus 365 n~~G~~ 370 (977)
|..|..
T Consensus 316 n~~~~~ 321 (434)
T 1igy_B 316 SAAFPA 321 (434)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 998865
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-21 Score=197.04 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=150.5
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCC-CCCcEEEEEEEEe
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL-AHYSRYEFFLVPF 620 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~a~ 620 (977)
++.++.++++...+.++|.|+|+++ ..+...+|.|+|+..+. ..+... ......+++.|.+| .+++.|.|+|.|.
T Consensus 7 pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~~Y~v~~~~~~~-~~~~~~--~~~~~~~~~~i~~L~~~~t~Y~~~V~A~ 83 (215)
T 1bqu_A 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATH-KFADCK--AKRDTPTSCTVDYSTVYFVNIEVWVEAE 83 (215)
T ss_dssp CCCCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTE-ECCCEE--CCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred CCCCCEeeEeEECCCCcEEEEcCCCCCCCCCceEEEEEEEcCC-Cccccc--cccCCcceEEEcCCccccccEEEEEEEE
Confidence 3455689999999999999999999 44445899999987652 122221 22356689999999 9999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE---ec
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT---VS 695 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~---~~ 695 (977)
|..|.+. +....+.+....++.+|.++++... +.+++.|+|++| ...+|.|.+|+|+|+..+...+.... ..
T Consensus 84 n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~ 160 (215)
T 1bqu_A 84 NALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDASTWSQIPPEDTA 160 (215)
T ss_dssp ETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECC--GGGGTSCEEEEEEEEETTCSSCEECCGGGGC
T ss_pred ecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCC--CCCCcceEEEEEEEccCCCCCceEecccccc
Confidence 9999986 5567777766656669999998764 678999999999 55678999999999986533333332 15
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCC---CCCceEEeecCCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGP---YSRPALLSLTSGP 739 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~---~S~~~~~~t~~~~ 739 (977)
...++++|.+|+|++.|.|+|+|.|.+|.|. +|+++.++|.+..
T Consensus 161 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~ 207 (215)
T 1bqu_A 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 207 (215)
T ss_dssp SCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCH
T ss_pred CccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccC
Confidence 6778999999999999999999999999876 6678888887643
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=197.72 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=133.0
Q ss_pred cccceEEeCC--CcEEEEEECCCCCCCCeEEEEeC---CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 11 QPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN---GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 11 ~p~~~~v~~G--~~v~L~C~~~~g~P~~~v~W~k~---g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+|..+.+.+| ++++|.|.+ .+ |.+.|.|+|+ |..+.. ..++....++.|.|.+++.+|+|.|+|.|.|..+
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~~--~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~ 88 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPD--GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 88 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECCC--SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----
T ss_pred CceEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCccccC--CCcccccCCccEEEccCChhcCceEEEEEEECCe
Confidence 4678999999 999999998 44 7789999884 666632 3456666678899999999999999999998655
Q ss_pred eeeeEeEEEEEEc--CCeEEeCC-CceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCCce---E---------Ee
Q psy574 86 TRESTDAVLRVLV--KPYIIRGP-KDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM---S---------VL 148 (977)
Q Consensus 86 ~~~s~~~~l~V~~--~P~~~~~p-~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~~~---~---------~~ 148 (977)
...+..+.|.|.. +|.+...+ ....+.+|++++|.|.+.|.| .+.+.|++++..+..... . ..
T Consensus 89 ~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (213)
T 2x1w_L 89 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168 (213)
T ss_dssp CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE
T ss_pred eEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcccee
Confidence 5555557777754 34444444 444899999999999998854 457999999887543211 0 11
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
...+|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+|.+
T Consensus 169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 2346999999999999999999999999999999999988765
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=199.83 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=136.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEE-EecCc--EEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGT--NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~-~~~~g--~L~I~~v~~~D~G~Y~C~a 80 (977)
-+|.|...|. ..+.+|++|+|.|.+ .+ |.+.|.|+|||..+..... +.. ...++ .|.|.+++.+|+|.|+|.+
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEc-CC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 4678888887 589999999999998 44 6789999999987743221 111 22345 8999999999999999999
Q ss_pred EecCce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 81 KNVAGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 81 ~n~~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
.|..|. ..+..+.|.|.. +|.+...| +..+.+|++++|.|.+.+.|.+.+.|+|++..+.........++.|.|.
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~ 162 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG 162 (218)
T ss_dssp EETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECC
T ss_pred EcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEc
Confidence 997653 345667888875 56676666 5688999999999977777888999999998876533222356789999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCC
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQMAP 189 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p 189 (977)
+++.+|+|.|+|.|.|... ..+..+.|.|...+
T Consensus 163 ~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 163 PVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp SCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred cCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 9999999999999998532 23456777777543
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=189.35 Aligned_cols=184 Identities=23% Similarity=0.316 Sum_probs=155.1
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccc---eEEEccCccCCCeEEEEEEEe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR---SLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+|.+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.. .++.+..++ +|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence 4578888899999999999999999999999999999999988754 455554443 799999999999999999999
Q ss_pred CCeeEEEEEEEEEeeCCeEEec---CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 173 AVGKISASATLTVQMAPIVRER---PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 173 ~~g~~~~~~~L~V~~~p~~~~~---p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
..+.....+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... ...
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-----~~~~~~~~~~-~~~ 158 (197)
T 3lcy_A 85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ-----NSENITIENT-EHY 158 (197)
T ss_dssp SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-----CCSSEEEEEC-SSE
T ss_pred CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC-----CCCceEEEEc-CCE
Confidence 9999888999999987776543 344578899999999999999999999999998763 3445555543 233
Q ss_pred eEEEEeeccc-CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 250 NLLKIQNVSR-TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 250 s~L~I~~v~~-~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..|.|.++.. +|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 159 ~~L~i~~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 159 THLVMKNVQRKTHAGKYK-VQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEESSCCHHHHCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEccccchhhCceEE-EEEEcCcCceEEEEEEEEec
Confidence 6899999995 8999999 99999999999998888875
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=187.71 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=136.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCe-EEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~-v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.-+|.+.+.|..+.+.+|++++|.|.+ .+.|.+. +.|+|||..+.. .++.|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~~~ 74 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTN 74 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECS
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEccC---------CceEEEEeCCCcccCEEEEEEee
Confidence 346888999998899999999999999 6777665 889999998842 36789999999999999999998
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCCCCceEEeccceEEEccCcc
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~ 160 (977)
|..+ +..+.|.|..++.....+ ...+.+|+.+.|.|.+.+.+. +.+.|+|++..+.. ...+..|.|.+++.
T Consensus 75 n~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L~i~~v~~ 146 (175)
T 1fnl_A 75 LSTL---SDPVQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATL 146 (175)
T ss_dssp SSCC---CCCEEEEEECSSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCG
T ss_pred CCcc---cccEEEEEeCCCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEEEEcccCh
Confidence 7544 456788888766655554 467889999999999977654 59999999987732 22567899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEee
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQM 187 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~ 187 (977)
+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 147 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 147 KDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred hhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 9999999999997664 55677787764
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=201.63 Aligned_cols=221 Identities=15% Similarity=0.193 Sum_probs=156.8
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
.++++|.++.+..++.+++.|+|.++ ++.+.+|.|+|+...... ..+.. ......++++.+|.|+
T Consensus 4 ~p~~~P~~l~~~~~~~~si~l~W~~p----~g~i~~Y~v~~~~~~~~~---------~~~~~--~~~~~~~~~i~~L~p~ 68 (234)
T 3f7q_A 4 MDLGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSE---------SEAHL--LDSKVPSVELTNLYPY 68 (234)
T ss_dssp -CCCCCEEEEEEECSSSCEEEEEECC----SSCCCEEEEEEEETTSCG---------GGCEE--EEESSSEEEECSCCTT
T ss_pred CCCCCCcceEEEEcCCCEEEEEEECC----CCccceEEEEEEECCCCc---------cceEE--EcCCccEEEECCCCCC
Confidence 56899999999999999999999998 247899999998764431 02222 2356788999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.|.+|... .+++....| . + +.++++...
T Consensus 69 t~Y~~~V~A~n~~G~g~~s~~~-~~~T~~~~P----~---------~------------------------P~~l~~~~~ 110 (234)
T 3f7q_A 69 CDYEMKVCAYGAQGEGPYSSLV-SCRTHQEVP----S---------E------------------------PGRLAFNVV 110 (234)
T ss_dssp CEEEEEEEEEETTEECCCCCCE-EEECCCCCC----C---------C------------------------CCCCEEEEC
T ss_pred CEEEEEEEEEeCCCcCCCCCeE-EEEcCCCCC----C---------C------------------------CCccEEEEe
Confidence 9999999999999988776543 222312222 1 1 245788889
Q ss_pred CCCeEEEEEEec--CCCccceEEEEEEecCCCC----CceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCC
Q psy574 556 TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA----SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPS 629 (977)
Q Consensus 556 ~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s 629 (977)
+.++|.|+|++| .++.+.+|.|+|+..+... .|...... ....+++.|.+|+|++.|.|+|+|.|..|.|++|
T Consensus 111 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S 189 (234)
T 3f7q_A 111 SSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD-NPKNRMLLIENLRESQPYRYTVKARNGAGWGPER 189 (234)
T ss_dssp SSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCS-CTTCCEEEEECCCTTCCEEEEEEEEETTEECCCE
T ss_pred cCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCCccCcceEEEec-CCcceEEEeCCCCCCCeEEEEEEEECCCccCCCc
Confidence 999999999999 5678999999999876532 12222221 2456789999999999999999999999999998
Q ss_pred C-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEe
Q psy574 630 N-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG 683 (977)
Q Consensus 630 ~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~ 683 (977)
. .+.++|.+.+|..+|....+...+ ...+..+.+|.++++.
T Consensus 190 ~~~~~~~T~~~~P~~~P~~~~~~i~~-------------~~~g~~~~~~~~~~~~ 231 (234)
T 3f7q_A 190 EAIINLATQPKRPMSIPIIPDIPIVD-------------AQSGEDYDSFLMYSDD 231 (234)
T ss_dssp EEEECGGGSCCCCCCCCCCTTCCEEE-------------TTC-------------
T ss_pred CceeEeecCCCCCCCCccccceeeEE-------------cccCcchheeeeehhh
Confidence 7 588999999998888654332222 2334567788887654
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=194.87 Aligned_cols=176 Identities=12% Similarity=0.161 Sum_probs=141.3
Q ss_pred EEEEeeEeC--CCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMT--STSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~--~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.++++..++ +++|.|+|++|.++.+.+|.|+|+.......|....+ ..+..++.|.+|+|++.|.|+|+|.|..|.
T Consensus 4 ~~l~v~~v~~~~~si~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~ 81 (201)
T 2ha1_A 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI--PGHLNSYTIKGLKPGVVYEGQLISIQQYGH 81 (201)
T ss_dssp CEEECCSCSCCSSCEEEEEECCSSTTCCEEEEEEEETTCSSCCEEEEE--CTTCCEEEECSCCTTEEEEEEEEEECTTSC
T ss_pred eeEEEEecCCCCCEEEEEEeCCCCCCceEEEEEEEECCCCCceEEEec--CCCccEEEecCCCCCCEEEEEEEEEecccc
Confidence 578888877 9999999999977899999999998765566765544 356789999999999999999999999998
Q ss_pred CCCCCceEEeccCC-----------CCCCCC----ceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-Ccce
Q psy574 626 GKPSNLRAVRTLEC-----------EPSGVP----QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSAL 689 (977)
Q Consensus 626 g~~s~~~~~~T~~~-----------~P~~~P----~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~ 689 (977)
|..+ .+.++|.+. .|..+| .++++...+.++|.|+|++| ++.|.+|.|.|+..+ ....
T Consensus 82 ~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~~~~ 155 (201)
T 2ha1_A 82 QEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA-----SDTVSGFRVEYELSEEGDEP 155 (201)
T ss_dssp EEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS-----CTTEEEEEEEEEETTTCCCC
T ss_pred cCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC-----CCCccEEEEEEEECCCCCce
Confidence 8654 455555432 233333 46787788889999999988 358999999998754 3444
Q ss_pred EEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 690 INMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 690 ~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
....+.++.++++|.+|+|++.|.|+|+|+|.+|.|......
T Consensus 156 ~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~ 197 (201)
T 2ha1_A 156 QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197 (201)
T ss_dssp EEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEE
T ss_pred eEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeE
Confidence 556678889999999999999999999999999998765433
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=189.72 Aligned_cols=169 Identities=21% Similarity=0.341 Sum_probs=137.1
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-+|.|.+.|..+.+.+|++++|.|.+ .+.|.+ .+.|+|+|..+.. .++.|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~ 72 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQ 72 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCC
Confidence 36888999999999999999999999 666664 7999999998842 267899999999999999999987
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccC
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
..+ +..+.|.|..++.....+ ...+.+|+++.|.|.+ .+.|.+.+.|+|++..+.... .+..|.|.+++.+
T Consensus 73 ~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----~~~~L~i~~v~~~ 144 (176)
T 1f2q_A 73 VNE---SEPVYLEVFSDWLLLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVE 144 (176)
T ss_dssp SSC---CCCEEEEEECSSEEEEES-CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGG
T ss_pred ccc---cccEEEEEeCcceeecCC-cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----CCCeEEECCCCcc
Confidence 544 356788888655554444 4678899999999999 567788999999999885322 4678999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEEeeCCe
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTVQMAPI 190 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~ 190 (977)
|+|.|+|.|.|..+. .+..+.|.|..+|.
T Consensus 145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999999996544 56678999988775
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=193.07 Aligned_cols=181 Identities=25% Similarity=0.402 Sum_probs=154.1
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEec-cceEEEccCccCCCeEEEEEEEeC
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP-SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
..+|.+...+.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+.. +..|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 4567888888888999999999999999999999999999998763 4555553 356999999999999999999998
Q ss_pred Cee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEE
Q psy574 174 VGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252 (977)
Q Consensus 174 ~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L 252 (977)
.|. ....+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.... .+ .|
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~--~~--~L 155 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-----ENSRIAVLE--SG--SL 155 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC-----CCSSEEECT--TS--CE
T ss_pred CCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEcc-----CCCcEEEec--CC--cE
Confidence 877 667789999999999988888899999999999999999999999999998763 223443332 34 89
Q ss_pred EEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEEC
Q psy574 253 KIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSG 287 (977)
Q Consensus 253 ~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~ 287 (977)
.|.++..+|+|.|+ |.|.|..|.. +..+.|.|..
T Consensus 156 ~i~~~~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 156 RIHNVQKEDAGQYR-CVAKNSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp EESSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred EEecCChhhCEEEE-EEEEcCCCcEEEEEEEEEEEe
Confidence 99999999999999 9999999987 4457888876
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=197.24 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=118.6
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|.+.|.. .+.+|++++|.|.+ .+.|. .|.|+|||..+......+.....++.|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP 80 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence 46788888874 89999999999999 56665 99999999877422111111123567999999999999999999988
Q ss_pred Cceee-eEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--Ee----ccceE
Q psy574 84 AGTRE-STDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRSL 153 (977)
Q Consensus 84 ~g~~~-s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~~----~~~~L 153 (977)
.|... +..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.| +.+.|+|++..+...... .. ..+.|
T Consensus 81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L 158 (196)
T 2d3v_A 81 AGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALF 158 (196)
T ss_dssp TEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEE
T ss_pred CCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEE
Confidence 76433 5667888886 46665554 35789999999999999888 899999999887532211 21 12689
Q ss_pred EEccCccCCCeEEEEEEEeCCe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
.|.+++.+|+|.|+|.|.|..+
T Consensus 159 ~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 159 PVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp ECCCCBTTBCEEEEEEEEETTE
T ss_pred EeeecCcccCeeEEEEEEccCC
Confidence 9999999999999999999765
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=195.20 Aligned_cols=178 Identities=18% Similarity=0.258 Sum_probs=135.6
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+-+|.|...|.. .+.+|++++|.|.+ .+ |.+.+.|+|+|..+............++.|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 3p2t_A 3 LPKPTLWAEPGS-VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79 (196)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEccCCC-cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence 347888999987 89999999999998 55 6789999999988743211111112346899999999999999999999
Q ss_pred cCc-eeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-----EeccceE
Q psy574 83 VAG-TRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSRSL 153 (977)
Q Consensus 83 ~~g-~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-----~~~~~~L 153 (977)
..| ...+..+.|.|.. +|.+...+.. .+.+|++++|.|.+.+. .+.+.|+|++..+...... ....+.|
T Consensus 80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L 157 (196)
T 3p2t_A 80 PVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEF 157 (196)
T ss_dssp TTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEE
T ss_pred CCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEE
Confidence 887 3446677888863 4566655554 78899999999999874 4689999999877543322 1245789
Q ss_pred EEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEE
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG-----KISASATLTV 185 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V 185 (977)
.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 158 ~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 158 PMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp EECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred EeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 9999999999999999999875 2334455554
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=193.28 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=134.2
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+-+|.|...|.. .+.+|++|+|.|.+ .+ +.+.+.|+|+|..+......+.....++.|.|.+++.+|+|.|+|.+.|
T Consensus 2 l~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 2 LPKPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeecCC-cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 457889999987 89999999999998 44 3478999999998743211111112356899999999999999999988
Q ss_pred cCcee-eeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccC
Q psy574 83 VAGTR-ESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158 (977)
Q Consensus 83 ~~g~~-~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v 158 (977)
..+.. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|++..+.........++.|.|.++
T Consensus 79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v 156 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV 156 (188)
T ss_dssp TTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEEEEECSSEEEEEEEEC
T ss_pred CCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccccccCCCceeEEEECCC
Confidence 65432 35667888874 57776666 4578999999999998764 4689999999877542222224578999999
Q ss_pred ccCCCeEEEEEEEeCCe---eEEEEEEEEEe
Q psy574 159 RLEDAGEYVCEAENAVG---KISASATLTVQ 186 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~ 186 (977)
+.+|+|.|+|.|.|... ..+..+.|.|.
T Consensus 157 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 157 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp CGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 99999999999998642 23445666653
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=190.64 Aligned_cols=194 Identities=16% Similarity=0.082 Sum_probs=149.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCC---CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQ---IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~---~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L 472 (977)
.++.+|.++.+...+.+++.|+|.+|.. ..++.+.+|.|+|+..... .|..........++++.+|
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L 71 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA-----------NTKYKNANATTLSYLVTGL 71 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC--------------CCCEEEEESSSEEEECSC
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCC-----------cceEEEeCCCceEEEecCc
Confidence 4578999999999999999999998753 2357889999999875443 2222223566789999999
Q ss_pred CCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.|++.|.|+|+|.|..|.+.+|.... +.+....| +.++.++++
T Consensus 72 ~p~t~Y~~~V~A~n~~g~~~~S~~~~-~~t~~~~P------------------------------------~~~P~~~~~ 114 (211)
T 3p4l_A 72 KPNTLYEFSVMVTKGRRSSTWSMTAH-GTTFELVP------------------------------------TSPPKDVTV 114 (211)
T ss_dssp CTTCEEEEEEEEEETTEECCCCCCEE-EECCCCCC------------------------------------CSCCEEEEE
T ss_pred CCCCEEEEEEEEEcCCCCCccceeEe-eecccCCC------------------------------------CCCCcceEE
Confidence 99999999999999999887775422 23312222 123467888
Q ss_pred eEe--CCCeEEEEEEec--CCCccceEEEEEEecCCCC--CceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 553 KPM--TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA--SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 553 ~~~--~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
... +.++|.|+|++| .++.+.+|.|+|+..+... .|....+ ..+.++++|.+|.|++.|.|+|+|.|..|.|
T Consensus 115 ~~~~~s~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 192 (211)
T 3p4l_A 115 VSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV--VGNRLTHQIQELTLDTPYYFKIQARNSKGMG 192 (211)
T ss_dssp EEETTEEEEEEEEEECCTTCCSCCCEEEEEEESCTTSCGGGSEEEEE--ESSCSEEEECCCCTTCEEEEEEEEEETTEEC
T ss_pred EecCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCceEEEEe--cCCeeEEEEcCCCCCCEEEEEEEEEcCCccC
Confidence 887 478999999999 5678999999999876532 3443333 3578899999999999999999999999999
Q ss_pred CCCCceEEeccCC
Q psy574 627 KPSNLRAVRTLEC 639 (977)
Q Consensus 627 ~~s~~~~~~T~~~ 639 (977)
++|+.+.++|...
T Consensus 193 ~~S~~v~~~~~~~ 205 (211)
T 3p4l_A 193 PMSEAVQFRTPKA 205 (211)
T ss_dssp CCCCCEEEECC--
T ss_pred CCCCCEEccCccc
Confidence 9999999988764
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=188.91 Aligned_cols=170 Identities=17% Similarity=0.242 Sum_probs=134.0
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
....++.+.|.|.+....|.+.|.|+|||..+.... |+.+..+ ..|.|.+++.+|+|.|+|.+.|..|... ..+
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~ 89 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTV 89 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCS--SEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEE
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCC--eEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE-EEE
Confidence 345777888888884336789999999999996443 4444332 3499999999999999999999877644 445
Q ss_pred EEEEEc--------------------CC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEecc
Q psy574 93 VLRVLV--------------------KP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 150 (977)
Q Consensus 93 ~l~V~~--------------------~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~ 150 (977)
.|.|.. +| .+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+...
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~ 169 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEc
Confidence 555542 34 3444567789999999999999999999999999999988753 4444322
Q ss_pred ----ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 151 ----RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 151 ----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus 170 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 38999999999999999999999999999999988743
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-20 Score=186.79 Aligned_cols=174 Identities=20% Similarity=0.342 Sum_probs=147.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCC---ceEEe--c--------cceEEEccCccCCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPED---RMSVL--P--------SRSLQLSDVRLEDA 163 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~---~~~~~--~--------~~~L~I~~v~~~D~ 163 (977)
.+|.|...|.+..+.+|+++.|.|.+. |.|.+.+.|+|++..+... ++.+. . .+.|.|.+++.+|+
T Consensus 1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 368899999999999999999999998 9999999999999998765 22332 2 36899999999999
Q ss_pred eEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEE
Q psy574 164 GEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|+|.+.|..+... ..+.|.|..+|.+...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+..... .
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----~- 154 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-----H- 154 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTT-----S-
T ss_pred cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCC-----c-
Confidence 999999999888754 4489999999999999999999999999999999999999 9999999987642211 1
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEE
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTV 285 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V 285 (977)
. ....|.|.+++ |+|.|+ |.|.|..|... ..+.|.|
T Consensus 155 ---~--~~~~L~i~~~~--d~G~Y~-C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ---G--PQRSLHVPGLN--KTSSFS-CEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ---S--CCEEEEECCCS--SCEEEE-EEEEETTEEEECCCEEEEE
T ss_pred ---C--CCCeEEEcccc--cCceEE-EEEEcCCCceEEEEEEEEE
Confidence 1 23489999987 789999 99999999885 6788887
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=217.38 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=140.2
Q ss_pred EEEEeeEeCCCeEEEEEEec--CC-CccceEEEEEEecCC-CCCce-------EEEEeecCccceEEECCCCCCcEEEEE
Q psy574 548 ELTEVKPMTSTSVKLTWEIL--NT-DYIEGVYIYSRGLDP-PASVA-------MLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p--~~-~~i~~Y~v~y~~~~~-~~~~~-------~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
.++. ..++.++|.|+|++| .+ ..+.+|.|+|+..+. ...|. ..........++++|.+|.|++.|.|+
T Consensus 338 ~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~fr 416 (536)
T 3fl7_A 338 HYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFT 416 (536)
T ss_dssp SCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEE
T ss_pred cceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEE
Confidence 4453 468899999999999 33 379999999998542 11221 111112245789999999999999999
Q ss_pred EEEeeccee---CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE
Q psy574 617 LVPFFGSVD---GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693 (977)
Q Consensus 617 V~a~n~~g~---g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~ 693 (977)
|+|.|..|. ++.+..+.++|.+.+|+ .+.+...+.++|.|+|++| ...+|.|++|+|+|+..+.. .....
T Consensus 417 V~A~N~~G~~sps~~s~~v~v~T~~~~Ps----~~~~~~~s~tSV~LsW~pP--~~~ng~I~~Y~V~y~~~~~~-~~~~~ 489 (536)
T 3fl7_A 417 VEARNGVSGLVTSRSFRTASVSINQTEPP----KVRLEGRSTTSLSVSWSIP--PPQQSRVWKYEVTYRKKGDS-NSYNV 489 (536)
T ss_dssp EEEECTTGGGCSCCCEEEEEEECCSCCCC----EEEEEECCC-CCEEEEECC--TTTTTTCSEEEEEEEEC--C-CCCEE
T ss_pred EEEEecCCCCCCCCccceeEEeecccCCC----CCceeeccCCeEEEEEECC--cCCCCcccEEEEEEEECCCC-ceEEE
Confidence 999999987 44667788888876664 4444677889999999998 78899999999999986533 33445
Q ss_pred ecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 694 ~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
+....++++|.+|+|++.|.|+|+|+|.+|.|++|+++.++|.+.
T Consensus 490 v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~ 534 (536)
T 3fl7_A 490 RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534 (536)
T ss_dssp EEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred EcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence 567889999999999999999999999999999999999998654
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=187.44 Aligned_cols=180 Identities=19% Similarity=0.306 Sum_probs=147.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. ..++....+++|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 6788899999999999999999999999999999999988764 4567777788999999999999999999999864
Q ss_pred e--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 176 K--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 176 ~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.+.|.+.+.|+++|..+. ...++.... ....
T Consensus 82 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~-----~~~~~~~~~---~~~~ 153 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-----ENEKYILKG---SNTE 153 (189)
T ss_dssp TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECC-----CSSSEEEET---TTTE
T ss_pred CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECc-----CCCcEEEec---CCCE
Confidence 3 34667888888888776655 3466789999999999999999999999998763 233444432 2348
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|.++..+|+|.|+ |.|.|..|....++.|.|..
T Consensus 154 L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 154 LTVRNIINSDGGPYV-CRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp EEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred EEEcCCChhhCeeEE-EEEEeCCCceeEEEEEEEEe
Confidence 999999999999999 99999999999888888764
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-21 Score=193.26 Aligned_cols=168 Identities=14% Similarity=0.239 Sum_probs=130.4
Q ss_pred ceEEeCCCeEEEEEE---ecccCceEEEEEECCeeCCC------------------CceEEe---ccceEEEccCccCCC
Q psy574 108 DTTVSASSIIVFECS---VGGDAVLTVHWKRLGSAMPE------------------DRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~---v~g~p~~~i~W~k~~~~l~~------------------~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
++++..|++++|.|. +.+.|.+.|.|+|++..+.. .++.+. ....|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467899999999995 56789999999998754321 122221 235799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.|+|.|.|..|..+..+.|.|..||.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+.. +.....++.+.
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~-~~~~~~r~~~~ 160 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA-PTAANGGVMKE 160 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------------CCEEC
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecC-cccccceEEEe
Confidence 99999999999999999999999999999888888999999999999999999999999987765432 11223445444
Q ss_pred EccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeE
Q psy574 244 ITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279 (977)
Q Consensus 244 ~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~ 279 (977)
. +|. ..|.|.+++.+|+|.|+ |.|.|..|....
T Consensus 161 ~--~g~l~il~i~~v~~~D~G~Yt-C~A~N~~G~a~~ 194 (203)
T 4fa8_A 161 K--DGSLSVAVDLSLPKPWHLPVT-CVGKNDKEEAHG 194 (203)
T ss_dssp T--TSCEEEEEEEEECSSCCCCEE-EEEESSSCEEEE
T ss_pred C--CCCEEEEEECCCCHHHCEEEE-EEEEcCCCEEEE
Confidence 3 343 45667899999999999 999999997754
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=193.27 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=130.9
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|. ..+.+|++++|.|.+ .+.|. .+.|+|||..+......+.....++.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence 4678888887 589999999999999 66665 69999999887422111111234678999999999999999999998
Q ss_pred C-ce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--Ee----ccce
Q psy574 84 A-GT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRS 152 (977)
Q Consensus 84 ~-g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~~----~~~~ 152 (977)
. |. ..+..+.|.|.. +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|++..+...... .. ..+.
T Consensus 81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~ 158 (198)
T 1ugn_A 81 TAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAI 158 (198)
T ss_dssp TTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEE
T ss_pred CCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeE
Confidence 7 53 235668888886 45555544 4688999999999999887 6799999999887543222 11 2378
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQ 186 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~ 186 (977)
|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 159 L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 159 FSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred EEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999999999999999999998652 2445566553
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=192.34 Aligned_cols=185 Identities=28% Similarity=0.436 Sum_probs=145.0
Q ss_pred cccceecc----cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCc-e-EEEecCcEEEEcCCCCCCCeEEEE
Q psy574 5 REEFRVQP----KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-R-LRLVDGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~p----~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~-r-~~~~~~g~L~I~~v~~~D~G~Y~C 78 (977)
.|.|...| ....+.+|++++|.|.+ .+.|.+.|.|+|+|..+...... . .....++.|.|.+++.+|+|.|+|
T Consensus 15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (231)
T 3ojm_B 15 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93 (231)
T ss_dssp EEEESCGGGGCCSCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCccccccccCceeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence 45565555 78899999999999998 78899999999999998543221 1 222335689999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcC----CeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEE----CCeeCCCCce---E
Q psy574 79 VVKNVAGTRESTDAVLRVLVK----PYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRM---S 146 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~----P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----~~~~l~~~~~---~ 146 (977)
.+.|..|.. ...+.|.|..+ |.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..+.. .
T Consensus 94 ~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~ 172 (231)
T 3ojm_B 94 VVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK 172 (231)
T ss_dssp EEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred EEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence 999988764 45678888753 33332 3567789999999999999999999999999 7766643211 1
Q ss_pred E--------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 147 V--------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 147 ~--------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
. .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|..
T Consensus 173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence 1 12357999999999999999999999999999999999977654
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=190.40 Aligned_cols=178 Identities=17% Similarity=0.269 Sum_probs=133.0
Q ss_pred cceecccceEEe-CCCcEEEEEECCCCCCCCeEEEEeCC-EEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNG-HPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~-~G~~v~L~C~~~~g~P~~~v~W~k~g-~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++++.|.+..+. +|++++|.|.+ .|.|.+.|.|+|+. ..+ .++.... .++.|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~v~i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 76 (202)
T 1vca_A 2 KIETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76 (202)
T ss_dssp EEEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred eEEECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCc----cceEEEcCCccEEEECcCCHHHCEEEEEEEEEC
Confidence 467788776554 99999999999 78999999999843 222 1222222 3457999999999999999999998
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEECCeeCCCCceE--------Eeccce
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRLGSAMPEDRMS--------VLPSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~~~~l~~~~~~--------~~~~~~ 152 (977)
.|. .+..+.|.|..+|..........+.+|+.++|.|.+.|. |. +.|.|+|++..+...... ......
T Consensus 77 ~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (202)
T 1vca_A 77 SRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE 155 (202)
T ss_dssp TEE-EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEE
T ss_pred Cce-EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEE
Confidence 775 456789999987753322222678999999999999775 43 489999999876432110 112345
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-------EEEEEEEEEeeCCe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-------ISASATLTVQMAPI 190 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-------~~~~~~L~V~~~p~ 190 (977)
|.|..+..+|.|.|+|+|.|..+. .++.+.|.|..+|.
T Consensus 156 l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 156 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred EEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 778888899999999999998764 46788899988875
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-21 Score=190.38 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=127.6
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|.+.|.. .+.+|++++|.|.+ .+ |.+.+.|+|+|... ...++.|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 74 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSR---------YQDQAVLFIPAMKRSLAGRYRCSYQNG 74 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC-ST-TCSEEEEEETTTCC---------EESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeC-CC-CCCEEEEEECCccc---------cCcccEEEECcCChhhCceEEEEEEcC
Confidence 35777888875 89999999999998 55 77899999998761 234678999999999999999999998
Q ss_pred Cce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 84 AGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.|. ..+..+.|.|.. +|.+...| +..+.+|++++|.|.+.+.+ +.+.|+|++..+..........+.|.|.+++
T Consensus 75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~ 152 (184)
T 2gi7_A 75 SLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVT 152 (184)
T ss_dssp TEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEET
T ss_pred CCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCC
Confidence 764 335667888853 56676666 55778999999999987665 6999999998876533233356789999999
Q ss_pred cCCCeEEEEEEEeCCe
Q psy574 160 LEDAGEYVCEAENAVG 175 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g 175 (977)
.+|+|.|+|.|.|..+
T Consensus 153 ~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 153 AAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TCCSEEEEEEEECTTS
T ss_pred ccCCeEEEEEEEeCCC
Confidence 9999999999999754
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=184.20 Aligned_cols=193 Identities=11% Similarity=0.101 Sum_probs=150.3
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEE--CCCCCCcEEEEEEEEe
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLV--TGLAHYSRYEFFLVPF 620 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i--~~L~p~t~Y~~~V~a~ 620 (977)
+..|+++++...+.++|+|+|+++ ..+....|.|+|+..+ ...|..+.........++.+ .+|.+++.|.|+|.|.
T Consensus 4 P~~P~nl~c~~~~~~~~~c~W~p~~~~~~~~~Y~l~y~~~~-~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V~A~ 82 (210)
T 3n06_B 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREG-ETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNAT 82 (210)
T ss_dssp CCCCEEEEEEBSSSSCEEEEEECCSSSCCCSEEEEEEEETT-CCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEEEEE
T ss_pred CCCCeEeEEEeCCCCeEEEEECCCCCCCCCceEEEEEEECC-CCccccCCCCCCCCCeEEEeCCCCcccceeEEEEEEEE
Confidence 445689999999999999999998 4444689999999876 34565543222123345555 5699999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEec----CcEEEEEeeCCCCCC-CCe-eeeEEEEEEEecCCcceEEEEe
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN----ATSVLLKWKPPPVGT-HNG-VIRTYQIIVGGGNNSALINMTV 694 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~----~~sv~v~W~~p~~~~-~ng-~i~~Y~v~~~~~~~~~~~~~~~ 694 (977)
|..|.+ .+..+.+.+.+.++++||.++.+...+ .+++.|+|++|.... .+| .+.+|+|+|+..+...+... .
T Consensus 83 N~~G~~-~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~~~~-~ 160 (210)
T 3n06_B 83 NQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH-F 160 (210)
T ss_dssp ETTEEE-ECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSCEEE-E
T ss_pred cCCCCe-eCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCCEEE-e
Confidence 999988 456677888777777899999988754 579999999996433 235 57999999998653333322 3
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCc-CCCCCceEEeecCCC
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGT-GPYSRPALLSLTSGP 739 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~-g~~S~~~~~~t~~~~ 739 (977)
....+++.|.+|+|++.|.|+|+|.+..|. |.||+++.|+|++..
T Consensus 161 ~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~~ 206 (210)
T 3n06_B 161 AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDF 206 (210)
T ss_dssp EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECCTTC
T ss_pred ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECcCCC
Confidence 446789999999999999999999999997 999999999997654
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=200.65 Aligned_cols=260 Identities=20% Similarity=0.246 Sum_probs=174.1
Q ss_pred eCCCceEEeCCCeEEEEEEecccCc----eEEEEEECC--eeC-----------------CCCceEEec-----cceEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~----~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I 155 (977)
..|....+.+|++++|.|.+.+.+. ..+.|+|+. ..+ ..+|+.+.. +.+|.|
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL 84 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence 3466788999999999999976543 689999862 211 024555542 258999
Q ss_pred ccCccCCCeEEEEEEEeCCe-----------e--EEEEEEEEEee----CCeEEe-cCCCcEEeeCCeEEEEEEEecC-C
Q psy574 156 SDVRLEDAGEYVCEAENAVG-----------K--ISASATLTVQM----APIVRE-RPSDLRLEVGRDAVFLCGIEGS-P 216 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g-----------~--~~~~~~L~V~~----~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p 216 (977)
.+++.+|+|.|.|.+.+..+ . ....+.|.|.. +|.+.. .+.......|+.++|.|.+.+. |
T Consensus 85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P 164 (512)
T 1zvo_C 85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP 164 (512)
T ss_pred CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence 99999999999999988642 1 23456788873 444432 2222212346899999999886 6
Q ss_pred CC-eEEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE----------
Q psy574 217 PP-STFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA---------- 281 (977)
Q Consensus 217 ~~-~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~---------- 281 (977)
.+ .|.|++++........ ...+.+.+. +.|.|.....+ .|.|+ |.|.|..+.....+
T Consensus 165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~-~g~yt-C~v~n~~~~~~~~~~~~~~~~~~~ 236 (512)
T 1zvo_C 165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTS------SQLSTPLQQWR-QGEYK-CVVQHTASKSKKEIFRWPESPKAQ 236 (512)
T ss_pred CceEEEEEcCcccCceEecCceecCCCCEEEE------EEEEEcHHHcC-CceEE-EEEEeCCCCceEEEecCCCCCCcC
Confidence 65 8999997543211000 011222222 37889888777 99999 99999988765544
Q ss_pred -EEEEECCC-----------------------------------------------CCCCCe-EEeCCCceeecCCCcEE
Q psy574 282 -SLTVSGPD-----------------------------------------------PNPPPV-ILFGPANQTLPLRSEAR 312 (977)
Q Consensus 282 -~l~V~~~~-----------------------------------------------~~~pp~-i~~~p~~~~v~~g~~~~ 312 (977)
.+.+..++ ...+|. +..+|....+..|+.++
T Consensus 237 ~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~ 316 (512)
T 1zvo_C 237 ASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKAT 316 (512)
T ss_pred CEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceE
Confidence 23333211 011233 45566666677899999
Q ss_pred EEEEEcc-Cc---eEEEEECCEEcCCC---CcEEEecCc------eEEEeccCCCCCeEEEEEEEcCCCceE
Q psy574 313 LRCQVRG-EG---SVQWWRGEREVGSG---PRVNVTGDG------SLVLTDVTKEDSGEYTCVVKSPHGSAS 371 (977)
Q Consensus 313 L~C~~~~-~p---~i~W~~~g~~l~~~---~~~~~~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~~~ 371 (977)
|.|.+.+ .| .|.|+++|..+... .......++ .|.|......|.|.|+|.|.|..+...
T Consensus 317 L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 317 FTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ 388 (512)
T ss_pred EEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence 9999998 33 89999999986522 111212233 488888888899999999999887653
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=192.65 Aligned_cols=180 Identities=29% Similarity=0.446 Sum_probs=138.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ce-EEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KR-LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r-~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
+..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .. .....+++|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus 22 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~ 99 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-R 99 (241)
T ss_dssp CCEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred CcceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-E
Confidence 456899999999999999 7889999999999999854322 12 223345689999999999999999999987764 4
Q ss_pred EeEEEEEEc----CCeEE-eCCCceEEeCCCeEEEEEEecccCceEEEEEE----CCeeCCCCce--EE----------e
Q psy574 90 TDAVLRVLV----KPYII-RGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRM--SV----------L 148 (977)
Q Consensus 90 ~~~~l~V~~----~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----~~~~l~~~~~--~~----------~ 148 (977)
..+.|.|.. +|.+. ..+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..... .. .
T Consensus 100 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (241)
T 3grw_A 100 QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179 (241)
T ss_dssp EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence 557788875 23333 34677789999999999999999999999999 7777653211 11 1
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEe
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE 193 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~ 193 (977)
....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|....
T Consensus 180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE 224 (241)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence 245799999999999999999999999999999999998776543
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=184.46 Aligned_cols=180 Identities=22% Similarity=0.397 Sum_probs=149.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE-CCeeCCC--CceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR-LGSAMPE--DRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k-~~~~l~~--~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
++.+...|.+..+.+|+++.|.|.+.+.+ .+.+.|++ ++..+.. .++.+. ....|.|.+++.+|+|.|+|.+
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 45667778889999999999999998876 88999999 7777653 444443 3478999999999999999999
Q ss_pred EeCC-eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 171 ENAV-GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 171 ~n~~-g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
.|.. +..+..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ...++.... ++
T Consensus 82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~- 155 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLS--NN- 155 (191)
T ss_dssp EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGG---CCTTEEECT--TS-
T ss_pred EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeecc---CCceEEEec--CC-
Confidence 9998 5678889999999999999999999999999999999999999999999999876432 223444332 34
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.|.|.+++.+|+|.|+ |.|.|..+.......+.|.
T Consensus 156 -~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 156 -YLQIRGIKKTDEGTYR-CEGRILARGEINFKDIQVI 190 (191)
T ss_dssp -CEEETTCCGGGCEEEE-EEEEEGGGTEEEEEEEEEE
T ss_pred -eEEECCCChhhCEEEE-EEEEEecceeEEEEEEEEe
Confidence 8999999999999999 9999998776666665553
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=186.04 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=125.9
Q ss_pred cceEEeCCCcEEEEEEC-CCCCCCCeEEEEeCCEEee--------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 13 KSQRVAAGDTALLECGP-PRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~-~~g~P~~~v~W~k~g~~l~--------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
..+.+.+|++++|.|.. +.+.|.+.|.|+|++..|. ....+|+.+..+|+|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~ 83 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 83 (176)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence 35789999999999943 3336677999999997653 12356888888899999999999999999999999
Q ss_pred Ccee-eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTR-ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~-~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.|.. .+..+.|.|..++. .......+..+.|.|.+.|.|.+.|.|+|++..+..+ ..+.|.++..+|
T Consensus 84 ~g~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~-------~~~~i~~~~~~d 151 (176)
T 1hng_A 84 NGTRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNL 151 (176)
T ss_dssp TCCEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE-------SSSEEEEECSCC
T ss_pred CCCEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC-------CcEEEEEEEccC
Confidence 8875 45667888876421 1112233556999999999999999999999877532 225566888999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEE
Q psy574 163 AGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+|.|+|.|.|..|..++.+.|.+
T Consensus 152 ~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 152 RAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SSCEEEEEEETTEEEEEEECCCC
T ss_pred CeEEEEEEEecCCCceecccccC
Confidence 99999999999998877776654
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=185.87 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=148.7
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEecee----cCcCeEEEEc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN----VPSPILTVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~~i~~ 471 (977)
..|++|.++.+...+. ++.|+|.+|...++.++.+|.|+|+..... .|...... .....+++.+
T Consensus 7 ~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~ 74 (209)
T 2vkw_A 7 DTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEE-----------VWHSKWYDAKEASMEGIVTIVG 74 (209)
T ss_dssp CCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCC-----------CCEEEEEEHHHHHHHSEEEECC
T ss_pred CCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCC-----------CceEeEeeccCCCccceEEeCC
Confidence 6789999999988877 699999999765566699999999876543 67665432 3457899999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|.|++.|.|+|+|.|..|.|.+|..... ++... ..| .++.++.
T Consensus 75 L~p~t~Y~~~V~A~n~~G~~~~s~~~~~-~T~~~---~~P---------------------------------~~P~~~~ 117 (209)
T 2vkw_A 75 LKPETTYAVRLAALNGKGLGEISAASEF-KTQPV---REP---------------------------------SAPKLEG 117 (209)
T ss_dssp CCTTCEEEEEEEEEETTEECCCCCCEEE-ECCCS---CSC---------------------------------CCCEEEE
T ss_pred CCCCCeEEEEEEEEcCCcccCCcccccc-cccCC---CCC---------------------------------CCCcccc
Confidence 9999999999999999999988765443 22111 011 2235678
Q ss_pred eeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCC
Q psy574 552 VKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPS 629 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s 629 (977)
+...+.++|.|+|++| .++.+.+|.|+|+. . ...|...... ....+++.|.+|+|++.|.|+|+|.|..|.|++|
T Consensus 118 ~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~-~-~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S 194 (209)
T 2vkw_A 118 QMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRA-L-SSEWKPEIRL-PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194 (209)
T ss_dssp EECTTSSCEEEEEECCCCTTSCCCEEEEEEEE-T-TSCCCCCEEE-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred cccccCCeEEEEEECcccCCCCCceEEEEEEC-C-CCCCceeeec-CCCccEEEecCCCCCCEEEEEEEEEeCCccCCcc
Confidence 8889999999999999 67899999999998 3 3455543322 3567899999999999999999999999999999
Q ss_pred CceEEeccC
Q psy574 630 NLRAVRTLE 638 (977)
Q Consensus 630 ~~~~~~T~~ 638 (977)
..+.+++..
T Consensus 195 ~~~~~~~~~ 203 (209)
T 2vkw_A 195 HFVFRTAAA 203 (209)
T ss_dssp EEEEECC--
T ss_pred hhhhhhhhh
Confidence 877766543
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=213.38 Aligned_cols=230 Identities=16% Similarity=0.130 Sum_probs=163.3
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccce
Q psy574 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLG 431 (977)
Q Consensus 352 ~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~ 431 (977)
...+.|.|.|.+.|..+....... ......+|++|.++. ..++.+++.|+|.+|...++..+.+
T Consensus 303 ~s~~~Gs~~C~C~ng~~ra~~d~~---------------~~~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~ 366 (536)
T 3fl7_A 303 LPSPEGATSCECEEGFFRAPQDPA---------------SMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIV 366 (536)
T ss_dssp ECCCTTCSSCEECTTCBCCTTCCT---------------TSCCBCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCE
T ss_pred CCCCCCccEEEEeccccccCCCcc---------------ccccccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeE
Confidence 345789999999998886431110 011124789999995 5788999999999998866668999
Q ss_pred EEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeecccccccc
Q psy574 432 YQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511 (977)
Q Consensus 432 Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p 511 (977)
|.|+|+........|..+.....|..........+++|.+|.|++.|.|+|+|.|..|.+.+++.+..+.... .+ .
T Consensus 367 Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T-~~-~-- 442 (536)
T 3fl7_A 367 YSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI-NQ-T-- 442 (536)
T ss_dssp EEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEEC-CS-C--
T ss_pred EEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEee-cc-c--
Confidence 9999997644332233333333454444456788999999999999999999999888754444444444421 11 1
Q ss_pred ccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCce
Q psy574 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVA 589 (977)
Q Consensus 512 ~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~ 589 (977)
+| ..+.+...++++|.|+|++| .++.|.+|+|+|+..+....+.
T Consensus 443 ----------~P------------------------s~~~~~~~s~tSV~LsW~pP~~~ng~I~~Y~V~y~~~~~~~~~~ 488 (536)
T 3fl7_A 443 ----------EP------------------------PKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYN 488 (536)
T ss_dssp ----------CC------------------------CEEEEEECCC-CCEEEEECCTTTTTTCSEEEEEEEEC--CCCCE
T ss_pred ----------CC------------------------CCCceeeccCCeEEEEEECCcCCCCcccEEEEEEEECCCCceEE
Confidence 11 12344788899999999999 6788999999999887542222
Q ss_pred EEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCC
Q psy574 590 MLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLEC 639 (977)
Q Consensus 590 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~ 639 (977)
.. ....++++|.+|+|++.|.|+|+|.|..|.|++|..+.++|.++
T Consensus 489 ~v----~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~ 534 (536)
T 3fl7_A 489 VR----RTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534 (536)
T ss_dssp EE----EESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred EE----cCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence 22 24668999999999999999999999999999999999999753
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=197.05 Aligned_cols=199 Identities=16% Similarity=0.223 Sum_probs=126.5
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l 140 (977)
++.+|+|.|+|.|. |... ..+.+.+..++.+...|..+.+.+|++++|.|.+.+.| .+.|.|+|++ ..+
T Consensus 11 v~~~dsg~Y~C~a~---g~~~-~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~ 86 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSF-TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP 86 (254)
T ss_dssp -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred ecCCccEEEEEcCc---hhhh-hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence 78999999999998 3322 23445555577888888899999999999999998887 4899999853 211
Q ss_pred -------------CCCceEEec---cceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEE
Q psy574 141 -------------PEDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRL 200 (977)
Q Consensus 141 -------------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v 200 (977)
..+++.+.. ..+|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.. +|.+...+.....
T Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~ 166 (254)
T 2c1o_A 87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ 166 (254)
T ss_dssp EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH
T ss_pred eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh
Confidence 124555542 2389999999999999999999876532 2334677763 6777765555544
Q ss_pred eeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeec-C------CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 201 EVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIY-P------GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~-~------~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
..|+.++|.|.+.+. |. +.+.|+|+|..+... . ....+.+.. .+.|.|.++..+|+|.|+ |.|.
T Consensus 167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~------~~~L~i~~~~~~d~G~Y~-C~a~ 239 (254)
T 2c1o_A 167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYT-CEAT 239 (254)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEE------EEEEEEEHHHHHTCCEEE-EEEE
T ss_pred ccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEE------EEEEEeccccccCCCeEE-EEEE
Confidence 578899999999884 44 469999999876321 0 001122222 238999999999999999 9999
Q ss_pred cCCCce
Q psy574 272 NAAGSD 277 (977)
Q Consensus 272 n~~g~~ 277 (977)
|.....
T Consensus 240 n~~~~~ 245 (254)
T 2c1o_A 240 HKTSTS 245 (254)
T ss_dssp CTTCSS
T ss_pred cCCCCC
Confidence 987654
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-21 Score=196.59 Aligned_cols=178 Identities=22% Similarity=0.396 Sum_probs=144.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe----------ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l----------~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
..|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+ ......|+.+.. +.|.|.+++.+|+|.
T Consensus 5 ~~i~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 5 VTVHSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGT 82 (209)
T ss_dssp CEEECSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSE
T ss_pred EEEEcCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcE
Confidence 456778888999999999999999 67899999999987653 123345666664 889999999999999
Q ss_pred EEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCc---------
Q psy574 76 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR--------- 144 (977)
Q Consensus 76 Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~--------- 144 (977)
|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+....
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence 99999998652 2356678889999988877777789999999999997 899999999999998876422
Q ss_pred -eEEe-ccceEEEccCccCCCeEEEEEEEeCCeeE--EEEEEEEE
Q psy574 145 -MSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTV 185 (977)
Q Consensus 145 -~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~L~V 185 (977)
+.+. ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 1221 45789999999999999999999999876 33444444
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=197.38 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=134.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCC---CCCCeEEEEeCCEEee----------------------------cCCCceEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGHPID----------------------------FENSKRLR 56 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g---~P~~~v~W~k~g~~l~----------------------------~~~~~r~~ 56 (977)
+...+..+.+.+|++++|.|.+ .+ .|.+.|.|+|++.... ....+|+.
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 83 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS 83 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEE
T ss_pred EEcCCCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEE
Confidence 3455668999999999999988 44 7889999999874320 12345565
Q ss_pred Eec--CcEEEEcCCCCCCCeEEEEEEEecCcee----eeEeEEEEEEcC---CeEE-eCCCceEEeCCCeEEEEEEeccc
Q psy574 57 LVD--GTNLAIQDSRKTDDGRYQCVVKNVAGTR----ESTDAVLRVLVK---PYII-RGPKDTTVSASSIIVFECSVGGD 126 (977)
Q Consensus 57 ~~~--~g~L~I~~v~~~D~G~Y~C~a~n~~g~~----~s~~~~l~V~~~---P~~~-~~p~~~~v~~G~~v~l~C~v~g~ 126 (977)
+.. +.+|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+ |.+. ..+....+.+|+++.|.|.+.|.
T Consensus 84 ~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~ 163 (250)
T 2fbo_J 84 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC 163 (250)
T ss_dssp CSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESC
T ss_pred eccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCC
Confidence 554 3579999999999999999999877643 245678888864 3333 34556777889999999999999
Q ss_pred CceEEEEEECCeeCCCC-------------------------ceEEeccceEEEccCccCCCeEEEEEEEe---CCeeEE
Q psy574 127 AVLTVHWKRLGSAMPED-------------------------RMSVLPSRSLQLSDVRLEDAGEYVCEAEN---AVGKIS 178 (977)
Q Consensus 127 p~~~i~W~k~~~~l~~~-------------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~g~~~ 178 (977)
|.|.|.|+|++..+... +........|.|.+++.+|+|.|+|.|.| ..|...
T Consensus 164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~ 243 (250)
T 2fbo_J 164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243 (250)
T ss_dssp TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence 99999999998877541 12222447899999999999999999999 445566
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..+.|.|
T Consensus 244 ~~~~l~V 250 (250)
T 2fbo_J 244 SSTILKV 250 (250)
T ss_dssp EEEEEEC
T ss_pred eeEEEeC
Confidence 6666654
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=180.90 Aligned_cols=163 Identities=18% Similarity=0.333 Sum_probs=133.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++.+.+.|..+.+.+|++++|.|.+ .+.| .+.+.|+|||..+... .+.+.|.+++.+|+|.|+|.+.+.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~ 73 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQT 73 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTS
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCC
Confidence 5778889988999999999999999 5555 6799999999999432 345778899999999999999864
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
. .+..+.|.|..+|.+...+ ...+.+|+++.|.|.+ .+.|.+.+.|+|++..+.. ...+..|.|.+++.+|
T Consensus 74 ~---~s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~v~~~d 145 (170)
T 3ry4_A 74 S---LSDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----SHLDPTFSIPQANHSH 145 (170)
T ss_dssp B---CCCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----ESSCCEEEESSCCGGG
T ss_pred C---ceEeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----cCCCCeEEEEeccccC
Confidence 3 3456788998877666555 5678899999999999 5667799999999987642 1246789999999999
Q ss_pred CeEEEEEEEeCCee-EEEEEEEEE
Q psy574 163 AGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+|.|+|.|.|..|. .+..+.|.|
T Consensus 146 ~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 146 SGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEE
T ss_pred CEEEEEEEEeCcCccccccEEEEE
Confidence 99999999999986 455666665
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-19 Score=192.61 Aligned_cols=257 Identities=15% Similarity=0.206 Sum_probs=182.2
Q ss_pred EecCCCcEEeeCCeEEEEEEEec-------CCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCe
Q psy574 192 RERPSDLRLEVGRDAVFLCGIEG-------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264 (977)
Q Consensus 192 ~~~p~~~~v~~G~~v~L~C~~~g-------~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~ 264 (977)
.+.|.+..+..|++++|.|.+.+ .|.+.|.|+++|..+. ..++.+... ..+.|.|.+++..| |.
T Consensus 8 ~i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~------~~~~~~~~~--~~~~L~i~~~~~~~-g~ 78 (303)
T 1i1r_A 8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP------KEQYTIINR--TASSVTFTDIASLN-IQ 78 (303)
T ss_dssp EEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC------GGGCEEEET--TEEEEEECSCCCSE-EE
T ss_pred eEccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECC------hhheeeeCC--cEEEEEEcCcCCCc-eE
Confidence 35678889999999999999985 4788999999998762 234554432 34589999999885 99
Q ss_pred EEEEEEEcCCCcee---EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcC-CCCcE
Q psy574 265 IILCLGVNAAGSDL---ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVG-SGPRV 338 (977)
Q Consensus 265 Y~~C~a~n~~g~~~---~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~-~~~~~ 338 (977)
|+ |.|.+. |... ..+.|.+..+ | +....|.|.... ...+.|......-. ....+
T Consensus 79 Y~-C~a~~~-g~~~~~~~~~~l~v~~~-----P-------------~~P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v 138 (303)
T 1i1r_A 79 LT-CNILTF-GQLEQNVYGITIISGLP-----P-------------EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTL 138 (303)
T ss_dssp EE-EEEEET-TTEEEEEEEEEEEEECC-----C-------------CCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEE
T ss_pred EE-EecccC-CCcceEEEEEEEeccCC-----C-------------CCCeeeEEEECCCCcEEEEccCCCCCCCCcCEEE
Confidence 99 999874 4332 2344555442 1 223356666655 55667764322110 01111
Q ss_pred EEe--------------cCceEEEecc-CCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCC
Q psy574 339 NVT--------------GDGSLVLTDV-TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403 (977)
Q Consensus 339 ~~~--------------~~~sl~I~~v-~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~ 403 (977)
... ...++.|.++ .+...+.|+|.|.|..|.... ..+.+.. .....|.||.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~------------~~~~~p~pP~~ 205 (303)
T 1i1r_A 139 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDP------------VYKVKPNPPHN 205 (303)
T ss_dssp EEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEEC-CCEEECG------------GGGEECCCCEE
T ss_pred EEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCccc-CCEEECH------------HHeEecCCCcc
Confidence 110 1235888898 888999999999999997642 1122211 11146889998
Q ss_pred CeEEee--CCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece---ecCcCeEEEEccCCCCeE
Q psy574 404 PTLVNQ--TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT---NVPSPILTVTNLTVGLTY 478 (977)
Q Consensus 404 ~~v~~~--~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~i~~L~p~t~Y 478 (977)
+.+... +.+++.|+|.+|.. .++.+.+|.|+|+..... .|..+.. .....++.|.+|.|++.|
T Consensus 206 ~~v~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~y~~~~~~-----------~w~~~~~~~~~~~~~~~~l~~L~p~t~Y 273 (303)
T 1i1r_A 206 LSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAS-----------TWSQIPPEDTASTRSSFTVQDLKPFTEY 273 (303)
T ss_dssp EEEECCSSSSSCEEEEEECCGG-GGTSCEEEEEEEEETTCS-----------SCEECCGGGGCSCCSEEEECSCCTTCEE
T ss_pred eEEEEecCCCCEEEEEECCCCC-CCcccEEEEEEEEeCCCC-----------CceEEccccCCCceeEEEeCCCCCCCEE
Confidence 887654 66899999999887 456899999999987533 7877643 445678999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEe
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
.|+|+|.|..|.|.+|.++..+..
T Consensus 274 ~~rV~A~n~~G~G~~S~wS~~~~~ 297 (303)
T 1i1r_A 274 VFRIRCMKEDGKGYWSDWSEEASG 297 (303)
T ss_dssp EEEEEEEETTSCSCCCCCCCCEEE
T ss_pred EEEEEeccCCCCCCcCCCCCccce
Confidence 999999999999999999987776
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=179.19 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=135.9
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++..++.++|.|+|++|.+ .+.+|.|+|+..+ ..+.... ......++.|.+|+|++.|.|+|+|.|..
T Consensus 7 p~~P~~l~~~~~~~~sv~l~W~~p~~-~i~~Y~v~~~~~~--~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 81 (186)
T 1qr4_A 7 LDNPKDLEVSDPTETTLSLRWRRPVA-KFDRYRLTYVSPS--GKKNEME--IPVDSTSFILRGLDAGTEYTISLVAEKGR 81 (186)
T ss_dssp -CCCEEEEEESCCSSEEEEEEECCSS-CCSEEEEEEECTT--CCEEEEE--ECTTCSEEEEESCCSSCEEEEEEEEESSS
T ss_pred CcCCCceEEEecCCCEEEEEEeCCCC-CccEEEEEEEeCC--CCeeEEE--CCCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence 33458899999999999999999843 7899999999543 3333333 33567899999999999999999999976
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
+.+.+ ..+.+.|. | .+|.++++...+.++|.|+|++|. |.|.+|.|.|+..+........+.+..++++|
T Consensus 82 ~~s~~-~~~~~~t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i 151 (186)
T 1qr4_A 82 HKSKP-TTIKGSTV---V-GSPKGISFSDITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKL 151 (186)
T ss_dssp CBCCC-EEEEEECC---C-CCCSCEEEESCCSSCEEEEECCCS-----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEE
T ss_pred ccCCC-EEEEEECC---C-CCCCccEEEEeCCCEEEEEEECCC-----CcccEEEEEEEeCCCCCceEEEcCCCcCEEEE
Confidence 65543 33555554 3 367899998888999999999882 67999999998865445556677788899999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+|+|++.|.|+|+|.+..|.|.+.
T Consensus 152 ~~L~p~t~Y~~~V~A~~~~g~s~p~ 176 (186)
T 1qr4_A 152 VKLVPGVDYNVNIISVKGFEESEPI 176 (186)
T ss_dssp CSCCSSCEEEEEEEEEETTEECCCE
T ss_pred cCCCCCCEEEEEEEEEcCCCcCcCE
Confidence 9999999999999999988877643
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=195.65 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=130.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCC---CCCCCeEEEEeCCEEee----------------cCCCceEEEec-----C
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR---GHPEPTLVWKKNGHPID----------------FENSKRLRLVD-----G 60 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~g~~l~----------------~~~~~r~~~~~-----~ 60 (977)
.+.+.+.|..+.+.+|++++|.|.+ . +.|.+.|.|+|++.... .....|+.+.. +
T Consensus 5 ~~~v~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 83 (268)
T 3mj6_A 5 LPGLTVSSPQLRVHVGESVLMGCVV-QRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND 83 (268)
T ss_dssp -------CCEEEEETTCCEEECCBC-CCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTB
T ss_pred ccccccCCCceEEecCCcEEEEEEe-ecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCE
Confidence 3567788889999999999999998 4 67778999999653210 11125666532 3
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCcee-eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe---cccCceEEEEEEC
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRL 136 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v---~g~p~~~i~W~k~ 136 (977)
++|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|. ...|....+.+|++++|.|.+ .+.|.+.+.|+|+
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~-----~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~ 158 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL-----PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE-----CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe-----ccCCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence 689999999999999999999875443 3444556654 235667889999999999999 6779999999995
Q ss_pred CeeCCC-----------------------CceEE-----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE-ee
Q psy574 137 GSAMPE-----------------------DRMSV-----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV-QM 187 (977)
Q Consensus 137 ~~~l~~-----------------------~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V-~~ 187 (977)
+..... .+..+ ..+..|.|.+++.+|+|.|+|.|.|..|.....+.|.| ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 332111 12222 23578999999999999999999999999999999999 46
Q ss_pred CCeEEecCCCcEEeeCCeEE
Q psy574 188 APIVRERPSDLRLEVGRDAV 207 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~ 207 (977)
+|.+...|....+.+|+.+.
T Consensus 239 ~p~~~~~p~~~~~~~~q~~~ 258 (268)
T 3mj6_A 239 EFQRTISPTPPTDKGQQGIL 258 (268)
T ss_dssp --------------------
T ss_pred CCeeeeCCCCCCCCcceecc
Confidence 77787888888777777654
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=182.31 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=130.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE--ee----------cCCCceEEEec----Cc--EEEEcCCCCCCCeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--ID----------FENSKRLRLVD----GT--NLAIQDSRKTDDGR 75 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~--l~----------~~~~~r~~~~~----~g--~L~I~~v~~~D~G~ 75 (977)
.+.+.+|++++|.|.+ .+.|.+.|.|+|++.. +. .....|+.+.. ++ +|.|.+++.+|+|.
T Consensus 4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 5789999999999998 6889999999999863 21 11234555542 23 49999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|+|.+.|..+ .+.|.|.. +. .+....+.+|++++|.|.+.+.|.+.+.|++++..+ ......|.|
T Consensus 83 Y~C~~~~~~~-----~~~l~V~~---~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i 147 (184)
T 2ny1_B 83 YICEVEDQKE-----EVQLLVFG---LT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV 147 (184)
T ss_dssp EEEEETTEEE-----EEEEEEEE---EE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEE
T ss_pred EEEEEEcCCC-----cEEEEEEE---ec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEE
Confidence 9999987533 45677763 22 345568899999999999988999999999997655 236688999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCe
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPI 190 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~ 190 (977)
.+++.+|+|.|+|.|.|..+..+..+.|.|...|.
T Consensus 148 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred ecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 99999999999999999999999999999987664
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-20 Score=182.30 Aligned_cols=172 Identities=23% Similarity=0.359 Sum_probs=140.7
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEec-----cceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLP-----SRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.... ..+.. ...|.|.+++.+|+|.|+|.+.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 4677888889999999999999999999999999999999887643 22221 36899999999999999999999
Q ss_pred CCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 173 AVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 173 ~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
..+. .+..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+... . . ...
T Consensus 82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~----~-~--------~~~ 148 (182)
T 1rhf_A 82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP----A-P--------SPS 148 (182)
T ss_dssp CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS----E-E--------SSE
T ss_pred CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC----C-C--------Cce
Confidence 8765 557889999999999999999999999999999999999999 99999999876311 0 0 234
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVS 286 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~ 286 (977)
.|.|.++ +|+|.|+ |.|.|..|... ..+.|.|+
T Consensus 149 ~L~i~~~--~d~G~Y~-C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 149 VLNVTGV--TQSTMFS-CEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp EEEECCC--SSCEEEE-EEEEETTEEEECCCEEEEEC
T ss_pred EEEEecc--ccCeEEE-EEEECCCCCcccceEEEEeC
Confidence 8999988 5899999 99999999875 36677663
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=188.28 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=133.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCC-CceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPE-DRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~-~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
|.|.. +.+..+.+|+.+.|.|.+. +.|.+.|.|+||+..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|
T Consensus 4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 34433 3367889999999999995 579999999999999864 34444422 2699999999999999999999
Q ss_pred CCeeEEEEEEEEEe---------------------eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCCeEEEEEcCeeee
Q psy574 173 AVGKISASATLTVQ---------------------MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPPSTFWMLEGNRSL 230 (977)
Q Consensus 173 ~~g~~~~~~~L~V~---------------------~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~g~~~~ 230 (977)
. .....+.+.+. .+|.|...+ ...+.+|+.+.|.|.+.|. |.|.+.|+|+|..+.
T Consensus 83 g--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~ 159 (207)
T 3rbs_A 83 G--KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 159 (207)
T ss_dssp T--TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred C--CeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECC
Confidence 4 33344443321 267776655 4788999999999999998 999999999998874
Q ss_pred ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
. ..++. ...+..+|.|.++..+|+|.|+ |.|.|..|....++.|.++
T Consensus 160 ~-----~~~~~---~~~~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 160 V-----DEKHD---FKDGICTLLITEFSKKDAGIYE-VILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp C-----CCCCC---CSSEEEEEEETTCCGGGCEEEE-EEEEETTEEEEEEEEECCC
T ss_pred C-----CCceE---cCCCEEEEEECCCCcccCEEEE-EEEEcCCCEEEEEEEEecC
Confidence 2 12221 1134458999999999999999 9999999999888887653
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=185.01 Aligned_cols=192 Identities=13% Similarity=0.072 Sum_probs=142.9
Q ss_pred CceEEEEEeeEe-CCCeEEEEEEec-CCCccceEEEEEEecCCC-----CCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 544 GSLIELTEVKPM-TSTSVKLTWEIL-NTDYIEGVYIYSRGLDPP-----ASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 544 ~~~~~~l~~~~~-~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~-----~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
+.++.++.+... ..++|.|+|+++ .++....|.|+|+..... ..+..+..........+.+.+|.+++.|.|+
T Consensus 5 P~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~~~ 84 (215)
T 1cd9_B 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIW 84 (215)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEEEE
T ss_pred CCCCeeeeeecCCCcccEEEEecCCCCCCCceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceEEEEE
Confidence 445688998887 689999999998 444456899999976431 1122222111233456777899999999999
Q ss_pred EEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe------cCcEEEEEeeCCCCCCCCeeeeEEEEEEE-ecCCcce
Q psy574 617 LVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL------NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSAL 689 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~------~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~-~~~~~~~ 689 (977)
|.|.|..|.+ .|..+.+.+.+.++++||.++++... +.+++.|+|++|. ..+..+++|+|+|+ ..+...+
T Consensus 85 V~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~--~~~~~~l~Y~v~y~~~~~~~~w 161 (215)
T 1cd9_B 85 VQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGANW 161 (215)
T ss_dssp EEEEETTEEE-ECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSTTCCC
T ss_pred EEEECCCCCc-cCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCC--CCCeEEEEEEEEEccCCCCCCc
Confidence 9999999987 45667888877777789999988775 5788999999994 33444589999999 5443333
Q ss_pred EE-EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcC---CCCCceEEeecCC
Q psy574 690 IN-MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTG---PYSRPALLSLTSG 738 (977)
Q Consensus 690 ~~-~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g---~~S~~~~~~t~~~ 738 (977)
.. .......+.+.|.+|+|++.|.|+|+|++.+|.| .+|+++.++|.+.
T Consensus 162 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e~ 214 (215)
T 1cd9_B 162 TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214 (215)
T ss_dssp EEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC-
T ss_pred EEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCCC
Confidence 32 2334567889999999999999999999997765 6889999888653
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=186.86 Aligned_cols=188 Identities=30% Similarity=0.482 Sum_probs=145.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC------ceEEeccceEE-----EccCccCCCeEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQ-----LSDVRLEDAGEY 166 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~------~~~~~~~~~L~-----I~~v~~~D~G~Y 166 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... +.....++.+. |.+++.+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 4678888999999999999999999999999999999999887542 22233444444 455689999999
Q ss_pred EEEEEeCCeeE-EEEEEEEEee-CCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 167 VCEAENAVGKI-SASATLTVQM-APIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 167 ~C~a~n~~g~~-~~~~~L~V~~-~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
+|.+.|..|.. +..+.|.|.. ++.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+.. ...++...
T Consensus 88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~----~~~~~~~~ 163 (212)
T 2v9r_A 88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD----KDERITIR 163 (212)
T ss_dssp EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT----TSTTEEEE
T ss_pred EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC----CcceEEcc
Confidence 99999998874 5577888875 5556667778899999999999998 8999999999999987742 22334333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p 300 (977)
++ .|.|.+++.+|+|.|+ |.|.|..|.... .+.|.|.. +|.+...|
T Consensus 164 ---~~--~L~i~~~~~~d~G~Y~-C~a~N~~g~~~s~~~~l~V~~-----~P~~~~~P 210 (212)
T 2v9r_A 164 ---GG--KLMITYTRKSDAGKYV-CVGTNMVGERESEVAELTVLE-----RPSFVKAA 210 (212)
T ss_dssp ---TT--EEEESSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-------------
T ss_pred ---CC--eEEEeeCCHhhCeeEE-EEEecccCceecceEEEEEEe-----CchHhhhc
Confidence 24 8999999999999999 999999998655 47899988 66666554
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=180.35 Aligned_cols=184 Identities=23% Similarity=0.282 Sum_probs=149.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|++|.++.+...+.+++.|+|.++...++..+.+|.|+++..... .|..........++.+.+|.|+
T Consensus 4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~p~ 72 (197)
T 3lpw_A 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRK-----------AYSTVATNCHKTSWKVDQLQEG 72 (197)
T ss_dssp CSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCS-----------SCEEEEEEECSSEEEECCCCTT
T ss_pred CCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCC-----------ccEEeecCCCccEEEEcCCCCC
Confidence 57999999999999999999999999765666799999999876543 6877766778899999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+|......+. ...| .++.++++...
T Consensus 73 t~Y~~~V~a~~~~g~~~~s~~~~~~t~-~~~p-------------------------------------~~p~~~~~~~~ 114 (197)
T 3lpw_A 73 CSYYFRVLAENEYGIGLPAETAESVKA-SERP-------------------------------------LPPGKITLMDV 114 (197)
T ss_dssp CEEEEEEEEEETTEECCCEECSSCEES-CCCC-------------------------------------CCCSCEEEEEE
T ss_pred CEEEEEEEEEcCccccCCCCCccceec-CCCC-------------------------------------CCCcccEEEec
Confidence 999999999999999888766555544 1111 11245778889
Q ss_pred CCCeEEEEEEec--CC-CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 556 TSTSVKLTWEIL--NT-DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 556 ~~tsv~lsW~~p--~~-~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
+.+++.|+|++| .+ +.+.+|.|+|+..+. ..|..... ...+++.|.+|.|++.|.|+|+|.|..|.|++|...
T Consensus 115 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~---~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s 190 (197)
T 3lpw_A 115 TRNSVSLSWEKPEHDGGSRILGYIVEMQTKGS-DKWATCAT---VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLS 190 (197)
T ss_dssp CSSCEEEEECCCSCCTTSCCCEEEEEEEETTC-SCCEEEEE---ESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECS
T ss_pred cCCeEEEEecCCCcCCCCcccEEEEEEEeCCC-CceEEeec---ccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCc
Confidence 999999999998 33 489999999998763 45554332 356889999999999999999999999999877643
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-21 Score=211.17 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=147.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|++++..+.... .+.....+++|.|.+++.+|+| .|+|+|.|.
T Consensus 158 ~P~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~ 235 (347)
T 2ifg_A 158 VPTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATV-MKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235 (347)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEE-CCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred CCceeccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeeccc-ccceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence 5788889999999999999999999 889999999999987653211 1222334678999999999999 999999999
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-----------ccce
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----------PSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-----------~~~~ 152 (977)
.|.. +..+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.|.|+|++..+...+.... .+++
T Consensus 236 ~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (347)
T 2ifg_A 236 VGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310 (347)
T ss_dssp TEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEE
T ss_pred CCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceE
Confidence 8865 56678888888885 112346799999999999999999999999999876543321 2567
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+|
T Consensus 311 L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 9999999999999999999999999999999998765
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=178.93 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=130.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
..+.+|++++|.|.+ .+.|.+ .+.|+|||+.+...... .....|.|. +.+|+|.|+|.+.|. .+..+
T Consensus 8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~----~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~ 76 (184)
T 3b5h_A 8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTA 76 (184)
T ss_dssp EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCC----CSEEEEEEC--GGGCCEEEEEEEEST----TSCEE
T ss_pred EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeeccccc----CCcEEEEEe--chhhCeEEEEEEECC----cCcEE
Confidence 568999999999998 555655 99999999999543211 112356666 689999999999973 23567
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE---CCe-eCCC---CceEEecc---ceEEEccCc-c
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR---LGS-AMPE---DRMSVLPS---RSLQLSDVR-L 160 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k---~~~-~l~~---~~~~~~~~---~~L~I~~v~-~ 160 (977)
.|.|..+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+| ++. .+.. +++.+..+ ..|.|.+++ .
T Consensus 77 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 156 (184)
T 3b5h_A 77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156 (184)
T ss_dssp EEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred EEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence 89999999999999888999999999999999999 79999999 444 3432 45555433 489999999 8
Q ss_pred CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 161 EDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+|+|.|+|.|.|..|.....+.|.|.
T Consensus 157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99999999999999998888998886
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=185.46 Aligned_cols=170 Identities=21% Similarity=0.313 Sum_probs=145.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..+.+...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+... .+..|.|.+++.+|+|.|+|.+.|..+..
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 91 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFE 91 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence 4577888999999999999999999999999999999999988654 45789999999999999999999987753
Q ss_pred -EEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 178 -SASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 178 -~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
+..+.|.|... |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...
T Consensus 92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~--------- 162 (218)
T 3k0w_A 92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------- 162 (218)
T ss_dssp ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC---------
T ss_pred eeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC---------
Confidence 56688888755 67888888889999999999999999999999999999876321
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc-eeEEEEEEEECC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS-DLARASLTVSGP 288 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~~ 288 (977)
....|.|.++..+|+|.|+ |.|.|..|. .+..+.|.|...
T Consensus 163 ------~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 163 ------TKKLYMVPYVDLEHQGTYW-CHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp ------CSSEEEESSCCGGGCEEEE-EEEECSSCEEECCCEEEEECC-
T ss_pred ------CCCEEEEeecChhcCEEEE-EEEEcCCCCceeeeEEEEEeCC
Confidence 1238999999999999999 999998887 456677888763
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=187.96 Aligned_cols=175 Identities=14% Similarity=0.277 Sum_probs=135.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEe---cCcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLV---DGTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~---~~g~L~I~~v~~ 70 (977)
+.+...| .+.+.+|++++|.|.+ .+.|.+.|.|+|+ +.. +. .....|+.+. .+++|.|.+++.
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 79 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA 79 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence 4566777 8999999999999999 6889999999982 221 11 1123466643 235799999999
Q ss_pred CCCeEEEEEEEecCc--eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCC
Q psy574 71 TDDGRYQCVVKNVAG--TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPE 142 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g--~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~ 142 (977)
+|+|.|+|.|.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..+..
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ 159 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence 999999999999887 345566789998 77888877766666799999999999875 43 49999999998864
Q ss_pred Cc---------eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 143 DR---------MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 143 ~~---------~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+. ........|.|.++..+|.|.|+|.|.|..+.....+.
T Consensus 160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 160 GVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp TEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 21 11112356999999999999999999999877665543
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=184.03 Aligned_cols=183 Identities=22% Similarity=0.325 Sum_probs=145.9
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeC-------------CCCceEEeccceEEEccCccCCCeEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-------------PEDRMSVLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l-------------~~~~~~~~~~~~L~I~~v~~~D~G~Y 166 (977)
..+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+ ...++.. .+..|.|.+++.+|+|.|
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~~D~G~Y 80 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGEY 80 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCcccCeEE
Confidence 45667788889999999999999999899999999987653 1244444 348999999999999999
Q ss_pred EEEEEeCCe--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE-EecCCCCeEEEEEcCe-eeeecCCC----ccc
Q psy574 167 VCEAENAVG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGN-RSLIYPGD----RVD 238 (977)
Q Consensus 167 ~C~a~n~~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~-~~g~p~~~i~W~~~g~-~~~~~~~~----~~~ 238 (977)
+|.+.|..| ..+..+.|.|..+|.+...+....+.+|+.++|.|. +.+.|.+.+.|++++. .+...... ...
T Consensus 81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~ 160 (212)
T 1f97_A 81 TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 160 (212)
T ss_dssp EEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSS
T ss_pred EEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCc
Confidence 999999876 567889999999888777777788999999999999 7899999999999998 66432211 012
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce--eEEEEEEEEC
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD--LARASLTVSG 287 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~--~~~~~l~V~~ 287 (977)
++... .....|.|.+++.+|+|.|+ |.|.|..|.. +..+.|.|..
T Consensus 161 ~~~~~---~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 161 SFTID---PKSGDLIFDPVTAFDSGEYY-CQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CEEEC---TTTCCEEESSCCGGGCEEEE-EEEECSSSCCEECCCEEEEEES
T ss_pred eeEec---CCCceEEEEecChhhCcEEE-EEEccccCCccccceEEEEEEE
Confidence 23222 12348999999999999999 9999999988 4556777765
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=189.88 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=135.2
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|.. .+.+|++|+|.|.+ .+ +...+.|+|+|..+............++.|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 82 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG 82 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEee-CC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence 46788889987 89999999999998 33 45689999999887422111111123567999999999999999999876
Q ss_pred Cce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 84 AGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.+. ..+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|++..+.........+..|.|.+++
T Consensus 83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~ 160 (242)
T 1p6f_A 83 ELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVT 160 (242)
T ss_dssp TEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECC
T ss_pred CccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCc
Confidence 543 236677888874 67777666 4578999999999999765 45899999998765421112245789999999
Q ss_pred cCCCeEEEEEEEeCC---eeEEEEEEEEEee
Q psy574 160 LEDAGEYVCEAENAV---GKISASATLTVQM 187 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~---g~~~~~~~L~V~~ 187 (977)
.+|+|.|+|.+.|.. ...+..+.|.|..
T Consensus 161 ~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 161 TAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp GGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred cccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 999999999999864 2345678888884
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=186.58 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=147.8
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++...+.++|.|+|++| ++.+.+|.|+|+..+....|....+. .+.+++.|.+|.|++.|.|+|+|.|..
T Consensus 21 p~~P~~l~~~~~~~~sv~l~W~~p-~~~~~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 97 (290)
T 3r8q_A 21 IPAPTDLKFTQVTPTSLSAQWTPP-NVQLTGYRVRVTPKEKTGPMKEINLA--PDSSSVVVSGLMVATKYEVSVYALKDT 97 (290)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECC-SSCCCEEEEEEEESSSSSCCEEEEEC--TTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred CCCCCceEEEECCCCEEEEEEeCC-CCCeeEEEEEEEeCCCCCceEEEEcC--CCccEEEeCCCCCCCEEEEEEEEEeCC
Confidence 445689999999999999999998 45799999999998766667665543 577899999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|.++. ..++|.+.+ .+|.++++...+.+++.|+|++| +|.+.+|.|+|+..+........+....++++|
T Consensus 98 g~s~~s~-~~~~t~~~~--~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i 169 (290)
T 3r8q_A 98 LTSRPAQ-GVVTTLENV--SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPIQRTIKPDVRSYTI 169 (290)
T ss_dssp EECCCEE-EEEECCCCC--CCCEEEEEEEECSSCEEEEEECC-----SCCCCEEEEEEEESSSCCCEEEEECTTCSEEEE
T ss_pred CCCCCcc-eeEecCCCC--CCCceeEEEEcCCCeEEEEEeCC-----CCcccEEEEEEEECCCCcceEEecCCCccEEEE
Confidence 9998774 667776654 38899999998999999999997 468899999999866444555667788899999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+|.|++.|.|+|+|.|..|.|..+
T Consensus 170 ~~L~p~t~Y~~~V~A~n~~g~s~~~ 194 (290)
T 3r8q_A 170 TGLQPGTDYKIYLYTLNDNARSSPV 194 (290)
T ss_dssp CSCCTTCEEEEEEEEEETTEECCCE
T ss_pred CCCCCCCEEEEEEEEEeCCcccCCE
Confidence 9999999999999999999987653
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=174.72 Aligned_cols=178 Identities=17% Similarity=0.282 Sum_probs=140.7
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
..+| +|.++.+..++.+++.|+|.++.. +.+.+|.|+|+..+... .+..........++++.+|.|
T Consensus 21 ~~~P-~P~~l~~~~~~~~sv~lsW~~p~~---~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p 86 (203)
T 2gee_A 21 MEVP-QPTDLSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGI----------PIFEDFVDSSVGYYTVTGLEP 86 (203)
T ss_dssp SCCC-CCEEEEEECCTTTCEEEEEECCSS---SSCCEEEEEEEESSSSS----------CCEEEEEETTCCEEEECSCCT
T ss_pred ccCc-CCCccEEEecCCCEEEEEecCCCC---CCccEEEEEEEECCCCC----------CceeEEcCCCccEEEeCCCCC
Confidence 3567 789999999999999999999864 57899999998765442 334444456788999999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
++.|.|+|+|.|..|.|.++ .+.+....| ++.++++..
T Consensus 87 ~t~Y~~~V~a~~~~g~s~~~----~~~t~~~~p--------------------------------------~P~~l~~~~ 124 (203)
T 2gee_A 87 GIDYDISVYTVKNGGESTPT----TLTQQTAVP--------------------------------------PPTDLRFTN 124 (203)
T ss_dssp TCEEEEEEEEESSSCBCCCE----EEEEECCCC--------------------------------------CCEEEEEEE
T ss_pred CCEEEEEEEEEeCCCccccE----eeeecCCCc--------------------------------------CCCceEEEE
Confidence 99999999999988876543 222211111 246889999
Q ss_pred eCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCC
Q psy574 555 MTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 555 ~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.+.++|.|+|++|.++.+.+|.|+|+.......+....+ ....+++.|.+|+|++.|.|+|+|.|..|.|++..
T Consensus 125 ~~~~sv~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~ 198 (203)
T 2gee_A 125 IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 198 (203)
T ss_dssp EETTEEEEEEECCSSCCCSEEEEEEEETTCGGGCEEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred cCCCEEEEEEcCCCCCCccEEEEEEEECCCCCccEEEEc--CCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence 999999999999977789999999998765444543333 46788999999999999999999999999986554
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=180.92 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=139.7
Q ss_pred eCCCeEEEEEEeccc-CceEEEEEECCeeCCC-CceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 112 SASSIIVFECSVGGD-AVLTVHWKRLGSAMPE-DRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..++.+.|.|.+.+. |.+.|.|+|++..+.. .++.+..+ ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|.
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 467888999999774 6889999999998865 45544322 459999999999999999999998888888888765
Q ss_pred e--------------------CCe-EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 187 M--------------------API-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 187 ~--------------------~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
. .|. +...|....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~ 169 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-----QTDHCNLKFE 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC-----CCSSEEEEEE
T ss_pred eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc-----cCCCEEEEEc
Confidence 2 343 3444666789999999999999999999999999998874 3445666654
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.++.+.|.|.+++.+|.|.|+ |.|.|..|.....+.|.|..
T Consensus 170 ~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 170 AGRTAYFTINGVSTADSGKYG-LVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp TTTEEEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEcCcchHHCeEEE-EEEEcCCCcEEEEEEEEEEc
Confidence 445679999999999999999 99999999999888888875
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=184.19 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=129.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCCEEeec-------------CCCceEEEecC------cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNGHPIDF-------------ENSKRLRLVDG------TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g~~l~~-------------~~~~r~~~~~~------g~L~ 64 (977)
...+..+.+.+|++++|.|.+ .+.| ...|.|+|++..+.. ...+|..+..+ .+|.
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 83 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence 345667899999999999998 5555 348999998754421 11356666533 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCCCC
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMPED 143 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~~~ 143 (977)
|.+++.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+.+|+.+.|.|.+.|.|.+.|.|+++ +..+...
T Consensus 84 I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~ 161 (222)
T 3sbw_C 84 ITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK 161 (222)
T ss_dssp ESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE
T ss_pred EcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCc
Confidence 999999999999999998 443 4567889998776544333333678999999999999999999999999 5555432
Q ss_pred ceE-Ee--ccceEEE---ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 144 RMS-VL--PSRSLQL---SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 144 ~~~-~~--~~~~L~I---~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
... .. .++.+.+ ..+..+|.|.|+|.|.|..|.....+.|.|..+|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 215 (222)
T 3sbw_C 162 TTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215 (222)
T ss_dssp EEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred cceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence 211 11 2232222 245678999999999999999999999999876643
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=184.00 Aligned_cols=188 Identities=26% Similarity=0.401 Sum_probs=147.5
Q ss_pred EcCCeEEeCC----CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-----eEEeccceEEEccCccCCCeEEE
Q psy574 97 LVKPYIIRGP----KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 97 ~~~P~~~~~p----~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
..+|.|...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++..+.... ........|.|.+++.+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 3467776655 77889999999999999999999999999999875421 22224568999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeC----CeEEe-cCCCcEEeeCCeEEEEEEEecCCCCeEEEEE----cCeeeeecCCCccc
Q psy574 168 CEAENAVGKISASATLTVQMA----PIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPSTFWML----EGNRSLIYPGDRVD 238 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~----p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~----~g~~~~~~~~~~~~ 238 (977)
|.+.|..+.....+.|.|... |.+.. .+....+.+|+.++|.|.+.+.|.+.+.|++ +|..+.... ..
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~---~~ 169 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDG---LP 169 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTS---CB
T ss_pred EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCC---cc
Confidence 999999999888899999853 23322 3567789999999999999999999999999 666543211 11
Q ss_pred cEEEEEc----cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 239 NIQAEIT----SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 239 ~~~~~~~----~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
....... ......|.|.++..+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~~ 222 (231)
T 3ojm_B 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYI-CKVSNYIGQANQSAWLTVLPK 222 (231)
T ss_dssp CEEEEEECSTTCSCTTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC
T ss_pred eEeEecccccccCCccEEEEecCCHHHCeEEE-EEEEeccceEeeEEEEEEecC
Confidence 1111111 012247999999999999999 999999999999999999884
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=182.50 Aligned_cols=187 Identities=25% Similarity=0.400 Sum_probs=143.4
Q ss_pred cCCeEEeC----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-----eEEeccceEEEccCccCCCeEEEE
Q psy574 98 VKPYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 98 ~~P~~~~~----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+|.|... +....+.+|+++.|.|.+.|.|.+.+.|+|++..+.... .......+|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 45666544 346789999999999999999999999999998875321 222355789999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEee----CCeEE-ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE----cCeeeeecCCCcccc
Q psy574 169 EAENAVGKISASATLTVQM----APIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML----EGNRSLIYPGDRVDN 239 (977)
Q Consensus 169 ~a~n~~g~~~~~~~L~V~~----~p~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~----~g~~~~~~~~~~~~~ 239 (977)
.+.|..+.....+.|.|.. +|.+. ..+....+.+|+.++|.|.+.+.|.+.+.|++ ++..+.... ...
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~---~~~ 166 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG---TPY 166 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTT---CCC
T ss_pred EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCC---cee
Confidence 9999999988889999874 23333 34667788999999999999999999999999 666543211 111
Q ss_pred EEEEE-----ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 240 IQAEI-----TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 240 ~~~~~-----~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
..... ...+...|.|.++..+|+|.|+ |.|.|..|.....+.|.|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~~ 219 (241)
T 3grw_A 167 VTVLKSWISESVEADVRLRLANVSERDGGEYL-CRATNFIGVAEKAFWLSVHGP 219 (241)
T ss_dssp EEEEEEEECSBSEEEEEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEC---
T ss_pred eeeeeEeeeeecCCceEEEECcCCcccCcEEE-EEEecCcceEEEEEEEEecCC
Confidence 11110 0012358999999999999999 999999999999999999884
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=182.59 Aligned_cols=167 Identities=13% Similarity=0.221 Sum_probs=136.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+|.+...|.+..+.+|+++.|.|.+.+.|.+. +.|+|++..+... ...|.|.+++.+|+|.|+|.+.|. .
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------~~~L~i~~v~~~D~G~Y~C~a~n~--~ 77 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQLS--T 77 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------SSEEEESSCCGGGCEEEEEEETTS--B
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------ccEEEEecccccCCEEEEEEeCCC--c
Confidence 456777788878999999999999999888775 9999999988754 378999999999999999999874 4
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
.+..+.|.|..+|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|+++|..+... . ....|.|.
T Consensus 78 ~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----------~---~~~~L~i~ 142 (204)
T 3sgj_C 78 LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----------H---HNSDFYIP 142 (204)
T ss_dssp CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------E---ECCCEEES
T ss_pred ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----------c---CCceEEEC
Confidence 45677888988887766655 788899999999999665 56789999999875321 0 12389999
Q ss_pred ecccCCCCeEEEEEEEcC-CCceeEEEEEEEECC
Q psy574 256 NVSRTAAPLIILCLGVNA-AGSDLARASLTVSGP 288 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~-~g~~~~~~~l~V~~~ 288 (977)
+++.+|+|.|+ |.|.|. .+..+..+.|.|...
T Consensus 143 ~v~~~D~G~Y~-C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 143 KATLKDSGSYF-CRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-
T ss_pred cCCcccCEEEE-EEEEeCCCceecCcEEEEEeCc
Confidence 99999999999 999994 445566678888874
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=196.48 Aligned_cols=365 Identities=13% Similarity=0.059 Sum_probs=223.4
Q ss_pred cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEee-CCCceEEEEEc
Q psy574 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ-TANGLTLAWSR 420 (977)
Q Consensus 342 ~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~-~~~sv~lsW~~ 420 (977)
+...+.|..+.+.|. .++..- ..+. ...+.+.+.. .+.+|.+|.++.+... ....+.|+|..
T Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~-----------~~~~p~~p~~l~~~~~~~~~~l~~~W~~ 113 (488)
T 2q7n_A 51 ETTNVKIPALSPGDH-EVTINY--LNGF---QSKFTLNEKD-----------VSLIPETPEILDLSADFFTSSLLLKWND 113 (488)
T ss_dssp SSSEEEEECCCSSCE-EEEEEE--SSSC---EEEEEECSTT-----------CEECCCCCCEEECCEETTTTEEEEEECB
T ss_pred ccceeEcccCCCCcc-eEEEee--ccCc---eeEEEEecCc-----------cccCCCCCeeEEEEEecCCCeEEEEEeC
Confidence 445678888887773 555442 2222 3334443221 1246999999877655 46789999987
Q ss_pred CCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCc----CeEEEEccCC--CCeEEEEEEEEc----CC
Q psy574 421 NNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPS----PILTVTNLTV--GLTYTFLVRALN----SH 488 (977)
Q Consensus 421 p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~----~~~~i~~L~p--~t~Y~~~V~a~n----~~ 488 (977)
+... .......|.|++....... ..|.... ..... .+.....+.| .+.|.++||+.. -.
T Consensus 114 ~~~~~~~~~~~~~~i~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~ 184 (488)
T 2q7n_A 114 RGSALPHPSNATWEIKVLQNPRTE---------PVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFS 184 (488)
T ss_dssp CGGGSCSSEEEEEEEECCCSSSSC---------SCCCEECCEECSSSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCC
T ss_pred CCccccccCCeEEEEEEEEeccce---------EEEEEEEEEEecCCCceeEeeccCCCcccccceEEEEEEEecccccc
Confidence 7651 1222467998875432221 0122211 11222 2344444443 569999999996 45
Q ss_pred CCCCCCCCCceEEeeccc---cccccccCC----c-----------ce-ee-c----CCCC-CCC-cc-hHHHH------
Q psy574 489 GLSAPSPLSDEIVLRGTF---SEGIFSEGG----K-----------GI-FS-E----NFPD-EGR-GE-SLRRA------ 535 (977)
Q Consensus 489 G~s~~S~~s~~~~~~~~~---p~~~p~~~~----~-----------~~-~~-~----~P~~-~~~-g~-~~~~~------ 535 (977)
|.+.+|.+|......... ....|.... . .| |. + +..+ .+. +. -...+
T Consensus 185 ~~~~ws~Ws~~~~~~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~~~~I~W~~ng~~i~~~ri~~~~~~L~I~nl~~sd~g 264 (488)
T 2q7n_A 185 GYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS 264 (488)
T ss_dssp SCBCCCCCCCCEECCCCCCSSCCEECTTCEEESSCCCEEEECCSSCEEEEEETTEECCCEECSSSCEEEECCSCCCCCSS
T ss_pred CCCCCcCCCChhhcCCcCCCceEECCCCCEEcCCCCEEEEEECCCCEEEEEECCEECchhhccceEEEEEEeCCCcccCC
Confidence 666677777666552211 111222110 0 00 00 0 0000 000 00 00000
Q ss_pred -------------hhc-ccccCCceEEEEEeeEeCCCeEEEEEEec-CC----CccceEEEEEEecCCCCCceEEEEeec
Q psy574 536 -------------RQH-LQEGGGSLIELTEVKPMTSTSVKLTWEIL-NT----DYIEGVYIYSRGLDPPASVAMLTVLHA 596 (977)
Q Consensus 536 -------------~~~-l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~ 596 (977)
... ..+.++.++.++.+...+.++++|+|+++ .. ..+..|.|+|+..+....|...... .
T Consensus 265 ~y~~~C~~~~~i~~~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~-~ 343 (488)
T 2q7n_A 265 GTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGL-T 343 (488)
T ss_dssp CEEEEEEESSCEEEEEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCC-C
T ss_pred cEEEEEEcCCeEEEEEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCcccccc-C
Confidence 000 01134555778888888999999999998 22 3578999999876532222111110 1
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeE
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRT 676 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~ 676 (977)
+....+.+..+..++.|.|+|.|.|..|.++ + .+.+.+.+.+++.||.++++...+.+++.|+|++| ...+|.++.
T Consensus 344 ~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP--~~~~g~~l~ 419 (488)
T 2q7n_A 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP--GNFTKINLL 419 (488)
T ss_dssp SSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEE--EECSSSEEE
T ss_pred CceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCC--CCCCCcceE
Confidence 3345677765555699999999999999854 4 57777777777779999999888889999999999 455789999
Q ss_pred EEEEEEecCCcce-EEEEecC-CcCeE--EecCCCCCceEEEEEEEEcCCCc---CCCCCceEEeecCC
Q psy574 677 YQIIVGGGNNSAL-INMTVSA-STPTL--LLTNLSAGIRYSVSLAATNRAGT---GPYSRPALLSLTSG 738 (977)
Q Consensus 677 Y~v~~~~~~~~~~-~~~~~~~-~~~~~--~l~~L~p~t~Y~~~V~A~~~~G~---g~~S~~~~~~t~~~ 738 (977)
|+|+|+..+...+ ....+.. ..+.+ .|.+|+|++.|.|+|||.+ .|. |+||+++.++|.+.
T Consensus 420 YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~ 487 (488)
T 2q7n_A 420 CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA 487 (488)
T ss_dssp EEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred EEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence 9999998664333 2233322 23445 9999999999999999999 887 58999888888653
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=183.99 Aligned_cols=198 Identities=17% Similarity=0.078 Sum_probs=148.3
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc-CC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL-TV 474 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L-~p 474 (977)
.+|++|.++.+...+.+++.|+|.++...+ ...+|.|+|+..... .+.+........++++.+| .+
T Consensus 6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L~~~ 72 (215)
T 1bqu_A 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHK-----------FADCKAKRDTPTSCTVDYSTVY 72 (215)
T ss_dssp CCCCCCEEEEEEEETTSCCEEEEECCSCCS--SCCEEEEEEEETTEE-----------CCCEECCSSCTTEEECSSCCCT
T ss_pred CCCCCCEeeEeEECCCCcEEEEcCCCCCCC--CCceEEEEEEEcCCC-----------ccccccccCCcceEEEcCCccc
Confidence 568999999999988899999999998732 347999999865322 2222233455688999999 99
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
++.|.|+|+|.|..|.+..+. ..+.+ .....|. | +.++++..
T Consensus 73 ~t~Y~~~V~A~n~~G~~~s~~--~~~~~---~~~~~p~---------p------------------------P~~~~~~~ 114 (215)
T 1bqu_A 73 FVNIEVWVEAENALGKVTSDH--INFDP---VYKVKPN---------P------------------------PHNLSVIN 114 (215)
T ss_dssp TSCEEEEEEEEETTEEEECCC--EEECG---GGSEECC---------C------------------------CEEEEEEC
T ss_pred cccEEEEEEEEecccCccCCc--EEecc---cccCcCC---------C------------------------CCceEEEE
Confidence 999999999999999875221 11111 1101111 2 35677766
Q ss_pred e--CCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEe-ecCccceEEECCCCCCcEEEEEEEEeecceeCC--
Q psy574 555 M--TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVL-HAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK-- 627 (977)
Q Consensus 555 ~--~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~-- 627 (977)
. ++++|.|+|++| .++.+.+|.|+|+..+ ...|...... .....++++|.+|+|++.|.|+|+|.|..|.|.
T Consensus 115 ~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S 193 (215)
T 1bqu_A 115 SEELSSILKLTWTNPSIKSVIILKYNIQYRTKD-ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 193 (215)
T ss_dssp C--CCSCEEEEEECCGGGGTSCEEEEEEEEETT-CSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCC
T ss_pred ecCCCceEEEEEeCCCCCCcceEEEEEEEccCC-CCCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccC
Confidence 5 789999999998 5677999999999987 4567654321 135678999999999999999999999998866
Q ss_pred -CCCceEEeccCCCCCCCC
Q psy574 628 -PSNLRAVRTLECEPSGVP 645 (977)
Q Consensus 628 -~s~~~~~~T~~~~P~~~P 645 (977)
+|..+.++|.+++|..+|
T Consensus 194 ~~S~~~~~~T~~~~P~~~p 212 (215)
T 1bqu_A 194 DWSEEASGITYEDRPSKEP 212 (215)
T ss_dssp CCCCCEEEEECCCHHHHHH
T ss_pred CCCCcccccccccCCcCCC
Confidence 566788999999887655
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=182.75 Aligned_cols=185 Identities=25% Similarity=0.418 Sum_probs=146.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceE-EeccceE----EEccCccCCCeEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMS-VLPSRSL----QLSDVRLEDAGEYVCE 169 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~-~~~~~~L----~I~~v~~~D~G~Y~C~ 169 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... ... ...++.+ .|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 5788999999999999999999999999999999999999988653 222 2234444 6888999999999999
Q ss_pred EEeCCeeE-EEEEEEEEee-CCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCC---ccccEEEE
Q psy574 170 AENAVGKI-SASATLTVQM-APIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAE 243 (977)
Q Consensus 170 a~n~~g~~-~~~~~L~V~~-~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~ 243 (977)
+.|..|.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+...... ...++...
T Consensus 88 ~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~ 167 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167 (217)
T ss_dssp EEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE
T ss_pred EecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec
Confidence 99998875 3467777774 6667777888889999999999999 89999999999999877422110 12333333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
. .+ .|.|.++..+|+|.|+ |.|.|..|....+..+.+..
T Consensus 168 ~--~~--~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 168 D--GG--NLLISNVEPIDEGNYK-CIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp T--TT--EEEESSCCSTTCEEEE-EEEEETTEEEECCCEEEEEC
T ss_pred C--CC--cEEEeeCCHHHCeEEE-EEEEcccceeccccEEEEEE
Confidence 2 34 8999999999999999 99999999887665554444
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-18 Score=186.64 Aligned_cols=278 Identities=19% Similarity=0.180 Sum_probs=178.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCCCce-EEeccceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
+..++..+.+..|++++|.|.+.+.+ .+.|.|++++..+..... ....++.|.|.+++..|+|.|+|.+ .|...+
T Consensus 9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~ 85 (325)
T 1n26_A 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAG 85 (325)
T ss_dssp CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSC
T ss_pred cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEee
Confidence 33444444557999999999987654 789999999877643222 2235688999999999999999993 567777
Q ss_pred EEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecc
Q psy574 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258 (977)
Q Consensus 180 ~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~ 258 (977)
.+.|.|..+|.. | . |.|.+.+.. ...+.|....... ....| .|......
T Consensus 86 ~~~L~V~~pP~~---P----------~-l~c~~~~~~~~~~c~W~~~~~~~------~~~~y----------~l~~~~~~ 135 (325)
T 1n26_A 86 TVHLLVDVPPEE---P----------Q-LSCFRKSPLSNVVCEWGPRSTPS------LTTKA----------VLLVRKFQ 135 (325)
T ss_dssp EEEEEECCCCCC---C----------C-CEEEBSSTTSCEEEEECCSSCCC------TTCEE----------EEEEEEES
T ss_pred eEEEEeccCCCC---C----------c-eeEEeecCCCcEEEEECCCCCCC------CCceE----------EEEEEEcc
Confidence 899999876641 1 1 566644322 2345565322110 00111 11111000
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcE
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV 338 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~ 338 (977)
..+.+.+ ...|.... .
T Consensus 136 ~~~~~~~----------------------------------------------~~~c~~~~--------------~---- 151 (325)
T 1n26_A 136 NSPAEDF----------------------------------------------QEPCQYSQ--------------E---- 151 (325)
T ss_dssp SSSCEEE----------------------------------------------EEEEEEET--------------T----
T ss_pred CCCCCcc----------------------------------------------cccCCCCC--------------C----
Confidence 0000000 01111000 0
Q ss_pred EEecCceEEEeccC-CCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCC--CceE
Q psy574 339 NVTGDGSLVLTDVT-KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA--NGLT 415 (977)
Q Consensus 339 ~~~~~~sl~I~~v~-~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~--~sv~ 415 (977)
....++.|..+. ....+.|+|.|.|..|.... ..+.+.. .....|+||.++.+...+. +++.
T Consensus 152 --~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s-~~~~~~~------------~~~v~P~pP~~l~v~~~~~~~~sv~ 216 (325)
T 1n26_A 152 --SQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFS-KTQTFQG------------CGILQPDPPANITVTAVARNPRWLS 216 (325)
T ss_dssp --TTEEEEEECCCTTCCCEEEEEEEEEETTEEEEC-CCEEEET------------TTCBCCCCCEEEEEEECTTCTTCEE
T ss_pred --CCCEEEEECCCcccCcEEEEEEEEEcCCCCccc-CcEEEee------------ccccCCCCCcceEEEEecCCCCEEE
Confidence 001123344333 34667899999999997632 1222221 1125689999998887754 5899
Q ss_pred EEEEcCCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCC
Q psy574 416 LAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494 (977)
Q Consensus 416 lsW~~p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S 494 (977)
|+|.+|... .+..+.+|.|+|+..... .|..........+++|.+|.|++.|.|+|+|.|..|.|.+|
T Consensus 217 lsW~~p~~~~~~~~~~~Y~V~yr~~~~~-----------~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S 285 (325)
T 1n26_A 217 VTWQDPHSWNSSFYRLRFELRYRAERSK-----------TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWS 285 (325)
T ss_dssp EEEECCTTCCCSSSCEEEEEEEEETTCS-----------CCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCC
T ss_pred EEECCCCccCCCcEeEEEEEEEEeCCCC-----------CCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCc
Confidence 999998762 455679999999886543 78876655567889999999999999999999999999999
Q ss_pred CCCceEEe
Q psy574 495 PLSDEIVL 502 (977)
Q Consensus 495 ~~s~~~~~ 502 (977)
.++..+..
T Consensus 286 ~wS~~~~~ 293 (325)
T 1n26_A 286 EWSPEAMG 293 (325)
T ss_dssp CCCCCEEE
T ss_pred CCCCccce
Confidence 99998876
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=175.99 Aligned_cols=162 Identities=22% Similarity=0.357 Sum_probs=122.1
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee---cC----------C---CceEEEecCcEEEEcCCCCCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID---FE----------N---SKRLRLVDGTNLAIQDSRKTDD 73 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~---~~----------~---~~r~~~~~~g~L~I~~v~~~D~ 73 (977)
-.|..+.+.+|++|+|.|.+..+.+.+.|.|+|+|..+. .. . .+|+.+..+++|+|.+++.+|+
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT 82 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence 357789999999999999984345667999999987552 10 0 1377777788999999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCC---eEEeCCCceEEeCCC-eEEEEEEeccc-CceEEEEEECCeeCCCCceEEe
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSASS-IIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVL 148 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P---~~~~~p~~~~v~~G~-~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~ 148 (977)
|.|+|.+.+..+... ..+.|.|..++ .+...+ ..+..|. +++|.|.+.|. |.+.|.|+|++..+.
T Consensus 83 G~Y~C~~~~~~~~~~-~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~------- 152 (193)
T 2if7_A 83 GSYRAQISTKTSAKL-SSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS------- 152 (193)
T ss_dssp EEEEEEEECSSCEEE-EEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-------
T ss_pred ceEEEEEEecCCCeE-EEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-------
Confidence 999999999877643 47788888664 333333 2234465 89999999874 589999999987653
Q ss_pred ccceEEEccCccC-CCeEEEEEEEeCCeeEEEEE
Q psy574 149 PSRSLQLSDVRLE-DAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 149 ~~~~L~I~~v~~~-D~G~Y~C~a~n~~g~~~~~~ 181 (977)
.+..|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus 153 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 153 SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp SSSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence 3455777655554 89999999999999875543
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=184.61 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=128.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEe----------ecCCCceEEEecC---cEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----------DFENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l----------~~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+ ......|+.+..+ .+|.|.+++.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEeCCccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh
Confidence 35566889999999999999999 78888899999843 211 1122356666533 37999999999
Q ss_pred CCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-ce
Q psy574 72 DDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-RM 145 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~~ 145 (977)
|+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .+.|+|++..+... ..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 161 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 161 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence 999999999998775555556788875 677766554444558999999999977 5665 89999999988765 21
Q ss_pred EEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 146 SVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 146 ~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
... ....|.|.++..+|+|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 111 1238999999999999999999998654
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=188.31 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=139.0
Q ss_pred EEEEEeeEeC-CCeEEEEEEec-CCCccceEEEEEEecCCC-----CCceEEEEeecCccceEEEC--CCCCCcEEEEEE
Q psy574 547 IELTEVKPMT-STSVKLTWEIL-NTDYIEGVYIYSRGLDPP-----ASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFL 617 (977)
Q Consensus 547 ~~~l~~~~~~-~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~-----~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V 617 (977)
+.++.+.... .++++|+|+++ .++....|.|+|+..... ..|..... .....++.|. +|.+++.|.|+|
T Consensus 102 P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~Y~f~V 179 (313)
T 2d9q_B 102 PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVP--KDGQSHCSIPRKHLLLYQNMGIWV 179 (313)
T ss_dssp CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECC--CTTCSEEEEEGGGCCSSSCEEEEE
T ss_pred CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCC--CCCCcEEEECccccccceeEEEEE
Confidence 4788888884 78999999999 444456799999876532 12322221 1233556664 599999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe------cCcEEEEEeeCCCCCCCCeeeeEEEEEEE-ecCCcceE
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL------NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALI 690 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~------~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~-~~~~~~~~ 690 (977)
.|.|..|.+ .+..+.+.+.+.+++.||.++++... ..+++.|+|++|. ..++.+++|+|+|+ ..+...+.
T Consensus 180 ~A~N~~G~~-~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~--~~~~~~l~Y~v~y~~~~~~~~w~ 256 (313)
T 2d9q_B 180 QAENALGTS-MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLHINQKCELRHKPQRGEASWA 256 (313)
T ss_dssp EEEETTEEE-ECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSSCCCCE
T ss_pred EEECCCCCc-cCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCC--CCCceeEEEEEEEccCCCCCCcE
Confidence 999999987 45557788877776679999988765 4588999999984 33445689999999 54433333
Q ss_pred E-EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC---CCCceEEeecCCC
Q psy574 691 N-MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP---YSRPALLSLTSGP 739 (977)
Q Consensus 691 ~-~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~---~S~~~~~~t~~~~ 739 (977)
. .......+.+.|.+|+|++.|.|+|+|+|.+|.|. ||+++.++|.+..
T Consensus 257 ~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~ 309 (313)
T 2d9q_B 257 LVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERA 309 (313)
T ss_dssp EEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC--
T ss_pred EcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccC
Confidence 3 23345667899999999999999999999988875 7788888887654
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=190.02 Aligned_cols=215 Identities=17% Similarity=0.148 Sum_probs=132.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceE-EEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRL-RLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~-~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-+|.+...|. ..+.+|++|+|.|.+ . .+.+.|.|+|||+.+..... .+. ....++.|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~-~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWS-D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEE-S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEec-C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 3677888886 779999999999998 3 35678999999876532100 000 01124679999999999999999998
Q ss_pred ecC----ceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce-EEe----c
Q psy574 82 NVA----GTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVL----P 149 (977)
Q Consensus 82 n~~----g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~-~~~----~ 149 (977)
+.. ....+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|++..+..... ... .
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~ 160 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTF 160 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCC
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCce
Confidence 643 12346677888874 467766665 4688999999999997764 68999999987653221 111 2
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCCeEEec-CCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
+..|.|.+++ |+|.|+|.|.+... ..+..+.|.|..+|.+... |.......|..+.|.|.+ |.+.+.|.|.
T Consensus 161 ~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~ 237 (257)
T 1b6u_A 161 QADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDL 237 (257)
T ss_dssp BEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------------
T ss_pred eEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHh
Confidence 5689999998 99999999997532 2456788999988876522 223356679999999865 5666788887
Q ss_pred EcC
Q psy574 224 LEG 226 (977)
Q Consensus 224 ~~g 226 (977)
..+
T Consensus 238 ~~~ 240 (257)
T 1b6u_A 238 NLD 240 (257)
T ss_dssp ---
T ss_pred hhh
Confidence 654
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=175.94 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=128.7
Q ss_pred CCCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 105 GPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 105 ~p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.|.+. .+.+|+++.|.|.+.|.|.+.|.|+++.......+.... .+..|.|.+++.+|+|.|+|.|.|..+..+..+.
T Consensus 6 ~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 85 (202)
T 1vca_A 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ 85 (202)
T ss_dssp ESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence 34444 445999999999999999999999995322111222222 3457999999999999999999999998888999
Q ss_pred EEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCC---CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecc
Q psy574 183 LTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPP---PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258 (977)
Q Consensus 183 L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~---~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~ 258 (977)
|.|..+|.. ...+. ..+.+|+.++|.|.+.+.++ +.+.|+|++..+............... .....|.|..+.
T Consensus 86 l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~ 162 (202)
T 1vca_A 86 VEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE--TKSLEVTFTPVI 162 (202)
T ss_dssp EEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCE--EEEEEEEECCCG
T ss_pred EEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcce--EEEEEEEEEeee
Confidence 999977643 33333 67899999999999988643 378999999876422100000000000 122367888888
Q ss_pred cCCCCeEEEEEEEcCCCc-------eeEEEEEEEEC
Q psy574 259 RTAAPLIILCLGVNAAGS-------DLARASLTVSG 287 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~-------~~~~~~l~V~~ 287 (977)
.+|.|.|+ |.|.|..+. ...+..|.|..
T Consensus 163 ~d~~g~yt-C~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 163 EDIGKVLV-CRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp GGTTCEEE-EEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred ccCCCeEE-EEEEccccCCCCcceeEeeEEEEEEec
Confidence 88999999 999998875 34567888887
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=179.71 Aligned_cols=146 Identities=19% Similarity=0.319 Sum_probs=110.3
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcC-CCCCCCeEEEEEEEecCceeeeEeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD-SRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~-v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
-..+.+|++++|.|.+ .+ |. .|.|+|||..+... .+++|.|.+ ++.+|+|.|+|+|.|..|. .+..+
T Consensus 8 ~~v~~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~ 75 (186)
T 1jbj_A 8 YKVSISGTSVELTCPL-DS-DE-NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYL 75 (186)
T ss_dssp CEEEEETTEEEEECSS-CC-CT-TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEE
T ss_pred EEEEeCCcEEEEEEeC-CC-CC-ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEE
Confidence 3456889999999998 55 43 49999999999543 256899999 9999999999999998876 33333
Q ss_pred EEEEEc--CCeE----------------E--eCC--Cc---eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE
Q psy574 93 VLRVLV--KPYI----------------I--RGP--KD---TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV 147 (977)
Q Consensus 93 ~l~V~~--~P~~----------------~--~~p--~~---~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~ 147 (977)
.+.|.. +|.. . ..+ .. ..+.+|+++.|.|.+ |.+.|.|+|++..+.....
T Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-- 150 (186)
T 1jbj_A 76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-- 150 (186)
T ss_dssp CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC--
T ss_pred EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC--
Confidence 444332 1110 0 000 01 123499999999998 7889999999999874332
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 56789999999999999999999998765
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=180.77 Aligned_cols=166 Identities=18% Similarity=0.243 Sum_probs=125.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe----------ecCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI----------DFENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l----------~~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.. |..+.+.+|++++|.|.+ .+.|.+.|.|+|+ |..+ ......|+.+..+ .+|.|.+++.+|
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADD 81 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHH
Confidence 445 889999999999999999 7888889999984 2221 1122356666533 379999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-ceE
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-RMS 146 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~~~ 146 (977)
+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|++..+..+ ...
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 161 (210)
T 1lk3_L 82 TAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS 161 (210)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE
T ss_pred CeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc
Confidence 99999999988765444456788875 577666554444558999999999976 4554 89999999988765 111
Q ss_pred E--e--cc------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 147 V--L--PS------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 147 ~--~--~~------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
. . .+ ..|.|.++..+|+|.|+|.|.|...
T Consensus 162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 200 (210)
T 1lk3_L 162 VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS 200 (210)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence 1 1 12 2699999999999999999999765
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=180.26 Aligned_cols=174 Identities=20% Similarity=0.249 Sum_probs=138.0
Q ss_pred CCCceEEeCCCeEEEEEEecccC----ceEEEEEEC----------------CeeCC------CCceEEec------cce
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA----VLTVHWKRL----------------GSAMP------EDRMSVLP------SRS 152 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p----~~~i~W~k~----------------~~~l~------~~~~~~~~------~~~ 152 (977)
.+..+.+.+|+++.|.|.+.+.+ .+.+.|+|+ +..+. .+|..+.. +.+
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 34566889999999999998776 469999983 33333 34555543 568
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeee
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~ 231 (977)
|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++.....
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 999999999999999999999998899999999988877665555568899999999999 8999999999996543322
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ... . .....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 166 ~~~---~~~---~--~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 166 PTP---WLA---E--MTSPVISVKNASSEYSGTYS-CTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp CGG---GGG---G--TTSSEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEECCBC
T ss_pred Ccc---cee---c--cCCCEEEEecCCHHHCEEEE-EEEEcCCCcEEEEEEEEEeC
Confidence 110 000 0 11239999999999999999 99999999998888888874
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-19 Score=183.40 Aligned_cols=176 Identities=21% Similarity=0.344 Sum_probs=134.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEE-----ee------cCCCceEE----------EecCcEEEEcC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHP-----ID------FENSKRLR----------LVDGTNLAIQD 67 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~-----l~------~~~~~r~~----------~~~~g~L~I~~ 67 (977)
..|.++.+.+|++++|.|.+ .+.|. +.|.|+|++.. +. .....|+. +..++.|.|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~ 83 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE 83 (231)
T ss_dssp CCCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred cCCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence 36778999999999999998 67774 89999985433 11 00134555 67678899999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeE-EEEEEe-cccCceEEEEEECCeeCCC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSII-VFECSV-GGDAVLTVHWKRLGSAMPE 142 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v-~l~C~v-~g~p~~~i~W~k~~~~l~~ 142 (977)
++.+|+|.|+|.+.+..+...+..+.|.|..+ |.+...+....+.+|+.+ .|.|.+ .|.|.+.+.|+|++..+..
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~ 163 (231)
T 2pet_A 84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV 163 (231)
T ss_dssp CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence 99999999999999987334567788999876 456666777778899988 999999 8999999999999998865
Q ss_pred Cc-----eEEec------------cceEEEccCccCCCeEEEEEEEe-----CCee-EEEEEEEEEe
Q psy574 143 DR-----MSVLP------------SRSLQLSDVRLEDAGEYVCEAEN-----AVGK-ISASATLTVQ 186 (977)
Q Consensus 143 ~~-----~~~~~------------~~~L~I~~v~~~D~G~Y~C~a~n-----~~g~-~~~~~~L~V~ 186 (977)
.. +.+.. .+.|.|.....+|.|.|+|.|.| ..+. .+..+.|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence 43 33321 15688876667779999999999 4454 4455565553
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-20 Score=206.33 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=158.4
Q ss_pred CCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEec
Q psy574 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLP 149 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~ 149 (977)
|.|.|+|.+.+... .+.+.+-.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|++++..+... +.....
T Consensus 136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~ 210 (347)
T 2ifg_A 136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP 210 (347)
T ss_dssp GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSS
T ss_pred cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecc
Confidence 56899998766211 12223335788888888999999999999999999999999999998765421 112235
Q ss_pred cceEEEccCccCCCe-EEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee
Q psy574 150 SRSLQLSDVRLEDAG-EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~ 228 (977)
+++|.|.+++.+|+| .|+|.|.|..|..+..+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.|.|+++|..
T Consensus 211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~ 286 (347)
T 2ifg_A 211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286 (347)
T ss_dssp EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEE
T ss_pred cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEE
Confidence 678999999999999 999999999999888999999988886 112346899999999999999999999999987
Q ss_pred eeecCCCccccEEEEEcc------CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDRVDNIQAEITS------DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~------~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.. .......... ....+|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+
T Consensus 287 l~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 287 LNE-----TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT-LLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp CCC-----CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEECSCC
T ss_pred CCC-----CcceeeEEEeecCCCcccceEEEECCCCcccCceEE-EEEecCCCceeeEEEEEecC
Confidence 641 1122211110 11348999999999999999 99999999998888888776
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=175.71 Aligned_cols=174 Identities=19% Similarity=0.202 Sum_probs=138.7
Q ss_pred EEeCCCceEEeCCCeEEEEEE-ecccCc-eEEEEEECCeeCC---CCceEE-eccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 102 IIRGPKDTTVSASSIIVFECS-VGGDAV-LTVHWKRLGSAMP---EDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~-v~g~p~-~~i~W~k~~~~l~---~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+.+..+.+|+++.|.|. +.+.|. +.+.|+|++..+. ..+... ..+++|.|.+++.+|+|.|+|.+.|..+
T Consensus 11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 90 (201)
T 3s97_C 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI 90 (201)
T ss_dssp CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence 344567889999999999999 888898 9999999998773 233333 3567899999999999999999999765
Q ss_pred eEEE---EEEEEEe-------eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 176 KISA---SATLTVQ-------MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 176 ~~~~---~~~L~V~-------~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
.... .+.+.+. .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. .. .... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-----~~--~~~~-~ 162 (201)
T 3s97_C 91 TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP-----ST--AEIS-T 162 (201)
T ss_dssp TEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC-----TT--CEEE-T
T ss_pred CcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC-----Cc--eeec-C
Confidence 4332 3444443 45667777778899999999999999999999999999998653 11 1111 1
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
....|.|.++..+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 163 --~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 163 --SGAVLKIFNIQLEDEGIYE-CEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp --TTTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEE
T ss_pred --CCCEEEEccCChhhCEEEE-EEEEecCCceeeeEEEEEe
Confidence 2239999999999999999 9999999999999888886
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=172.77 Aligned_cols=166 Identities=13% Similarity=0.210 Sum_probs=133.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+|.+...|....+.+|++++|.|.+.+.|.+. +.|+|++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~- 78 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL- 78 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC-
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc-
Confidence 457778888888999999999999998887766 889999987754 457899999999999999999998554
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
+..+.|.|..++.+.. +....+.+|+.++|.|.+.+.+++ .+.|+|+|..+... . ....|.|.
T Consensus 79 -s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----------~---~~~~L~i~ 142 (175)
T 1fnl_A 79 -SDPVQLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----------H---HNSDFHIP 142 (175)
T ss_dssp -CCCEEEEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----------E---ECCCEEES
T ss_pred -cccEEEEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----------C---CCCEEEEc
Confidence 4567788876555444 345788999999999999987665 99999999876311 0 12389999
Q ss_pred ecccCCCCeEEEEEEEcCCCc-eeEEEEEEEEC
Q psy574 256 NVSRTAAPLIILCLGVNAAGS-DLARASLTVSG 287 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~ 287 (977)
+++.+|+|.|+ |.|.|..+. .+..+.|.|.+
T Consensus 143 ~v~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 143 KATLKDSGSYF-CRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred ccChhhCeEEE-EEEEcCCCCccCccEEEEEeC
Confidence 99999999999 999997654 44556777764
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=183.45 Aligned_cols=185 Identities=17% Similarity=0.258 Sum_probs=134.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEe---------------ecCCCceEEEecCc-----E
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDGT-----N 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l---------------~~~~~~r~~~~~~g-----~ 62 (977)
.+..+|.++.+.+|++|+|.|.+ .+.+ .+.|.|+|. +..+ ......|+.+..++ +
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 81 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTA-SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAY 81 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred eeEecCCCeeecCCCcEEEEEEe-eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEE
Confidence 45678889999999999999998 5643 679999992 2111 11123566665432 4
Q ss_pred EEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCCCeEEEEEEecccC
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSASSIIVFECSVGGDA 127 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G~~v~l~C~v~g~p 127 (977)
|.|.+++.+|+|.|+|.+.|..+......+.|.|.. +|.+...|....+.+|++++|.|.+.+.+
T Consensus 82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 161 (253)
T 3uzq_A 82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV 161 (253)
T ss_dssp EEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred EEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc
Confidence 999999999999999999986655444566788874 46777888889999999999999998888
Q ss_pred ce----EEEEEECC--eeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEE
Q psy574 128 VL----TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLT 184 (977)
Q Consensus 128 ~~----~i~W~k~~--~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~ 184 (977)
.+ .+.|+|++ ..+. .+++... ...+|.|.+++.+|+|.|+|.|.|..+. .....+|.
T Consensus 162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~ 241 (253)
T 3uzq_A 162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLE 241 (253)
T ss_dssp EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEE
T ss_pred ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEE
Confidence 76 89999952 2211 1344332 2346999999999999999999986543 34456788
Q ss_pred EeeCCeEE
Q psy574 185 VQMAPIVR 192 (977)
Q Consensus 185 V~~~p~~~ 192 (977)
|...+.+.
T Consensus 242 v~~~~~~~ 249 (253)
T 3uzq_A 242 IKRPLEHH 249 (253)
T ss_dssp ECCC----
T ss_pred EcCCCCCc
Confidence 87655543
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=176.04 Aligned_cols=169 Identities=16% Similarity=0.255 Sum_probs=124.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|. ..+.+|++++|.|.+.+.|. .+.|+|++..+... ......+..|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 4677777776 48899999999999988776 69999999877421 1112256789999999999999999999987
Q ss_pred -e--eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 175 -G--KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 175 -g--~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
| ..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+.. ...++........
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~----~~~~~~~~~~~~~ 155 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHP----QCLNSQPHARGSS 155 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC----------CEEEC------CC
T ss_pred CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCC----ccccccccCCCcc
Confidence 5 345678888886 45555544 3688999999999999988 789999999986531 1111111111112
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
...|.|.+++.+|+|.|+ |.|.|..+
T Consensus 156 ~~~L~i~~v~~~D~G~Y~-C~a~n~~~ 181 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYR-CYAYDSNS 181 (198)
T ss_dssp EEEEEECCCCTTSCEEEE-EEEECTTS
T ss_pred eeEEEecccCcccCeEEE-EEEEeCCC
Confidence 359999999999999999 99999876
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-18 Score=172.76 Aligned_cols=178 Identities=20% Similarity=0.330 Sum_probs=146.6
Q ss_pred CCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCC--CcEEEec---CceEEEeccCCCCCeEEEEEEE
Q psy574 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSG--PRVNVTG---DGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 292 ~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~--~~~~~~~---~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
.+|.| ..|.+..+..|+.+.|.|.+.+ .|.+.|+++|..+... .++.+.. .++|.|.++...|.|.|+|.|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 36677 5677788999999999999999 7799999999998765 4555543 4579999999999999999999
Q ss_pred cCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC
Q psy574 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444 (977)
Q Consensus 365 n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~ 444 (977)
|..|.....+.|.+. ..|.+|..+.+. ....++.|+|..|...++.++..|.|+++.....
T Consensus 97 n~~g~~~~~~~l~v~----------------~~P~~p~~~~~~-~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~-- 157 (215)
T 3mtr_A 97 NRIGQESLEFILVQA----------------DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE-- 157 (215)
T ss_dssp CSSCEEEEEEEEEEC----------------CCCCCCEEEEEE-EETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC--
T ss_pred ECCCceEEEEEEEEC----------------CCCCCCcceEEE-EecceEEEEEecCCccCCCceEEEEEEEEECCCC--
Confidence 999999888888886 346777776664 5567899999988876788999999999876544
Q ss_pred CCCCCCCcccEEEeceec----CcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 445 SPSGDTATATWVRVATNV----PSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 445 ~~~~~~~~~~w~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
.|....... ....++|.+|.+++.|.|+|+|.|..|.|.+|....
T Consensus 158 ---------~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~ 206 (215)
T 3mtr_A 158 ---------VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206 (215)
T ss_dssp ---------CCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEE
T ss_pred ---------cccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCccccee
Confidence 676654322 237899999999999999999999999999886554
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=177.55 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=126.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~ 69 (977)
+.. |..+.+.+|++++|.|.+ .+.| .+.|.|+|++ ..+. .....|+.+..+ .+|.|.+++
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 81 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ 81 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred EEC-CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence 445 889999999999999998 6666 4789999953 2221 122356665532 379999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED 143 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~ 143 (977)
.+|+|.|+|.+.|..+......+.|.|. .+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+|++..+..+
T Consensus 82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~ 161 (212)
T 1q0x_L 82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG 161 (212)
T ss_dssp GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence 9999999999999876544455677774 46777665544445679999999999875 443 89999999888654
Q ss_pred ceE----Eec------cceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 144 RMS----VLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 144 ~~~----~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
... ... ...|.|.++..+|+|.|+|.|.|........
T Consensus 162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 162 METTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence 211 111 2368999999999999999999987654444
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=176.69 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=131.5
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEee----------------cCCCceEEEec------CcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPID----------------FENSKRLRLVD------GTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~----------------~~~~~r~~~~~------~g~L~I 65 (977)
.|..+.+.+|++++|.|.+ .+.|.+ .|.|+|++..+. .....|+.+.. +++|.|
T Consensus 5 ~p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp CCSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred CCCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 4667999999999999999 666655 489999775432 11123444332 356999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~ 144 (977)
.+++.+|+|.|+|.+.+..+........+.+..++ .....+....+..|+.+.+.|.+.|.|.+.|.|+|++..+....
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~ 163 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence 99999999999999998776655555566665544 33444556677889999999999999999999999988775433
Q ss_pred eEEe-----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 145 MSVL-----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 145 ~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.... ..+.|.|.++..+|.|.|+|.|.|..|..+..+.+.|.
T Consensus 164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 2221 23479999999999999999999999876666666554
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=179.89 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=123.1
Q ss_pred ccee-ccc-ceEEeCCCcEEEEEECCCCCCC---CeEEEEeCCEE-----------ee----cCCCceEEEec------C
Q psy574 7 EFRV-QPK-SQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHP-----------ID----FENSKRLRLVD------G 60 (977)
Q Consensus 7 ~~~~-~p~-~~~v~~G~~v~L~C~~~~g~P~---~~v~W~k~g~~-----------l~----~~~~~r~~~~~------~ 60 (977)
+|.+ .|. .+.+.+|++|+|.|.+ .+.|. ..|.|+|++.. +. .....|+.... +
T Consensus 4 Qf~V~~P~~pV~v~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~ 82 (226)
T 4f80_A 4 QFSVLGPSGPILAMVGEDADLPCHL-FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK 82 (226)
T ss_dssp CCEEECCSSCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTE
T ss_pred eEEEECCCCCEEEEcCCcEEEEEEE-ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCe
Confidence 4555 344 4889999999999988 44443 37999987632 21 11233444432 2
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECCee
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSA 139 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~ 139 (977)
.+|.|.+++.+|+|.|+|.|.|..|... +.+.+..++.+...+....+.+|+.+.|.|.+.| .|.|.|.|+|+++.
T Consensus 83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~---~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~ 159 (226)
T 4f80_A 83 AALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE 159 (226)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEE---EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred EEEEEeeCchHHCeeEEEEEECCCcEEE---EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence 4799999999999999999999877533 3455555555555556668889999999999977 59999999997654
Q ss_pred -CCCCce--EEeccce---EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 140 -MPEDRM--SVLPSRS---LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 140 -l~~~~~--~~~~~~~---L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
++.... ....++. +.+.+++.+|+|.|+|.|.|..|..++.+.|.|..|
T Consensus 160 ~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 160 NIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp BCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 333222 2223332 345567889999999999999999889998888643
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=182.26 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=134.2
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~~-----g~L~ 64 (977)
..+|.++.+.+|++|+|.|.+ .+.| .+.|.|+|+ +..+. .....|+.+..+ .+|.
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ 82 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EECCCCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence 456778999999999999998 6664 679999994 32221 012357776532 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-----EEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-----TVHWKR 135 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-----~i~W~k 135 (977)
|.+++.+|+|.|+|.+.|..|. .....+.|.|..+|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|
T Consensus 83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k 162 (256)
T 1nqb_A 83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL 162 (256)
T ss_dssp ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence 9999999999999999988652 2234568889888888888888899999999999999888765 999999
Q ss_pred --CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEee
Q psy574 136 --LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQM 187 (977)
Q Consensus 136 --~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~ 187 (977)
++..+. ..++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|..
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 554331 2344443 2357999999999999999999985432 33455677763
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=175.90 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=128.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE---eccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+....... ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 46777777777 8899999999999988 678999999998876422111 245789999999999999999999998
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
|. .+..+.|.|.. +|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+... ........ ....
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~----~~~~~~~~-~~~~ 154 (196)
T 3p2t_A 82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLL----CLRSEHGA-QQHQ 154 (196)
T ss_dssp EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGG----SEEEEEEE-EEEE
T ss_pred cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccce----eecccccc-cCcc
Confidence 83 45667788863 4566655554 78899999999999874 5689999999765321 11111110 0122
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
..|.|.+++.+|+|.|+ |.|.|..+
T Consensus 155 ~~L~i~~v~~~d~G~Y~-C~a~n~~~ 179 (196)
T 3p2t_A 155 AEFPMSPVTSVHGGTYR-CFSSHGFS 179 (196)
T ss_dssp EEEEECSCCGGGCEEEE-EEEECGGG
T ss_pred eEEEeCCCcccCCCeEE-EEEEcCCC
Confidence 48999999999999999 99999876
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=178.47 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=139.8
Q ss_pred ceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 545 SLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
.+|.++++...+.+++.|+|++|. +.+.+|.|+|+.......|....+ .....++.|.+|.|++.|.|+|+|.|..|
T Consensus 16 ~~P~~l~~~~~~~~sv~l~W~~~~-~~~~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 92 (283)
T 1tdq_A 16 DGPTQILVRDVSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGGKTTFRL--QPPLSQYSVQALRPGSRYEVSISAVRGTN 92 (283)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCS-SCCSEEEEEEEESSSSCCCEEEEE--CTTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred CCCcEEEEEecCCCeEEEEEECCC-CceeEEEEEEEEecCCCCcEEEEe--CCCCCEEEecCCCCCCEEEEEEEEECCCC
Confidence 345789999999999999999997 678999999987765566644433 36788999999999999999999999998
Q ss_pred eCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCC---cCeE
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS---TPTL 701 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~ 701 (977)
.+.. ....+.|. | .+|.++++...+.+++.|+|++|. +.+.+|.|+|+..+........+..+ .+++
T Consensus 93 ~s~~-~~~~~~t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (283)
T 1tdq_A 93 ESDA-SSTQFTTE---I-DAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKT 162 (283)
T ss_dssp ECCC-EEEEEECC---C-CCCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEE
T ss_pred CCCC-eeEEEECC---C-CCCCceEEEecCCCeEEEEecCCC-----CCccEEEEEEEeCCCCcceEEECCCCCcccceE
Confidence 8753 33555553 3 477899999989999999999983 67999999998865444445566666 8899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPY 727 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~ 727 (977)
+|.+|+|++.|.|+|+|+|..|.|..
T Consensus 163 ~i~~L~p~t~Y~~~V~A~n~~g~s~~ 188 (283)
T 1tdq_A 163 TLTDLVPGTEYGVGISAVMNSKQSIP 188 (283)
T ss_dssp EECSCCTTCEEEEEEEEEETTEECCC
T ss_pred EEecCCCCCEEEEEEEEEeCCCCCcc
Confidence 99999999999999999999887653
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=178.34 Aligned_cols=166 Identities=17% Similarity=0.325 Sum_probs=124.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe-------------ecCCCceEEEec----CcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI-------------DFENSKRLRLVD----GTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l-------------~~~~~~r~~~~~----~g~L~I~~ 67 (977)
.+.+.|.++.+.+|++|+|.|.. +.|.+.|.|+|+ +..+ ......|+.+.. +.+|.|.+
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 79 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL 79 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred cceECccceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence 46678889999999999999993 678899999995 2211 011234666653 34799999
Q ss_pred CCCCCCeEEEEEEEecCce----eeeEeEEEEEEcCC------------eEEeCCCceEEeCCCeEEEEEEecccCceEE
Q psy574 68 SRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKP------------YIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P------------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i 131 (977)
++.+|+|.|+|.+.|..|. .....+.|.|...+ .+...|....+.+|++++|.|.+.+.|.+.+
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i 159 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF 159 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence 9999999999999987542 11234577887543 5666788889999999999999999999999
Q ss_pred EEEECCe--eC-------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeCC
Q psy574 132 HWKRLGS--AM-------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 132 ~W~k~~~--~l-------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.|+|++. .. ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999742 11 124444431 3589999999999999999999973
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=177.07 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=125.1
Q ss_pred ecccceEEeCCCcEEEEEECCCC------CCCCeEEEEeCCEE------ee---------cCCCceEEEec-----CcEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG------HPEPTLVWKKNGHP------ID---------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g------~P~~~v~W~k~g~~------l~---------~~~~~r~~~~~-----~g~L 63 (977)
..|..+.+.+|++|+|.|.+... .+.+.|.|+|++.. +. ....+|+.+.. +++|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL 84 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL 84 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence 34788999999999999998322 25789999998752 11 12346777754 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCceee---eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecc----cCceEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRE---STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGG----DAVLTVHW 133 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~---s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g----~p~~~i~W 133 (977)
.|.+++.+|+|.|+|.+.+..+... +..+.|.|..+ |.+.. +. .+.+|+.++|.|.+.| .|.+.+.|
T Consensus 85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W 161 (214)
T 2zg1_A 85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSW 161 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEE
Confidence 9999999999999999998764332 24678888864 44433 32 2679999999999976 48899999
Q ss_pred EECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEE
Q psy574 134 KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTV 185 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V 185 (977)
+|++..+...+. ...+.|.|..+..+|.|.|+|.|.|..+. .++.+.|.|
T Consensus 162 ~~~~~~~~~~~~--~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLDPET--TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSCSSC--CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCCCCc--eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 999876543322 35678999999999999999999997654 445555544
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=171.14 Aligned_cols=169 Identities=22% Similarity=0.365 Sum_probs=136.1
Q ss_pred eEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 109 TTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..+.+|++++|.|.+.+.|.+ .+.|+|++..+...... .....|.|. ..+|+|.|+|.|.|.. ...+.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~V~ 81 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQLH 81 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEEEC
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEEEe
Confidence 467899999999999887777 99999999887654321 123456666 6899999999999832 367789999
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEE---cCeeeeecCCCccccEEEEEccCCceEEEEeecc-cCC
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWML---EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS-RTA 261 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~---~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~-~~d 261 (977)
.+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++ ++..... ....+++.+... .+.+.|.|.+++ .+|
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~L~i~~v~~~~d 158 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM--NGSESRFFVSSS-QGRSELHIENLNMEAD 158 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC--TTGGGTEEEEEE-TTEEEEEECSCCTTTS
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEee--cCCCCEEEEEec-CCeeEEEEeecccccc
Confidence 999998888888899999999999999999 79999999 5555432 123467777654 345799999999 899
Q ss_pred CCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 262 APLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 262 ~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|.|+ |.|.|..|.....+.|.|..
T Consensus 159 ~G~Y~-C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 159 PGQYR-CNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp SEEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred CceEE-EEEEeCCCcceEEEEEEEec
Confidence 99999 99999999998888888864
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=175.12 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=122.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceEE-EecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLR-LVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~~-~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-+|.|...|. ..+.+|++++|.|.+ . .|.+.+.|+|||..+..... .+.. ...++.|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 3567788886 779999999999998 3 47789999999987632110 0111 1234679999999999999999998
Q ss_pred ecC----ceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc--eEEe---c
Q psy574 82 NVA----GTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVL---P 149 (977)
Q Consensus 82 n~~----g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~--~~~~---~ 149 (977)
+.. ....+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+.... .... .
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~ 161 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTF 161 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCce
Confidence 753 12335667888875 467766665 57899999999999976 467899999998775321 1111 2
Q ss_pred cceEEEccCccCCCeEEEEEEEeCC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+..|.|.+++ |+|.|+|.|.+..
T Consensus 162 ~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 162 QADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEEEEEEECC--SCEEEEEEEEETT
T ss_pred EEEEEeCCcC--CCeeEEEEEEcCC
Confidence 5689999998 9999999999764
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=180.14 Aligned_cols=222 Identities=17% Similarity=0.185 Sum_probs=161.3
Q ss_pred EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCC
Q psy574 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGS 426 (977)
Q Consensus 347 ~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~ 426 (977)
.+..+.+...+.|++.|.|..|.+..+. +.+... ....|.++.++.+.... +++.|+|.++..
T Consensus 64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~-~~~~~~------------~~~~~~p~~~~~~~~~~-~si~l~W~~p~~--- 126 (290)
T 3l5i_A 64 KLTVNLTNDRYLATLTVRNLVGKSDAAV-LTIPAC------------DFQATHPVMDLKAFPKD-NMLWVEWTTPRE--- 126 (290)
T ss_dssp EEEEEECSSCEEEEEEEEESSCBCCCEE-EEECCT------------TCCCCCCCEEEEEEEET-TEEEEEEECCSS---
T ss_pred EEEEEcCCceEEEEEEEEcCCCCCCCce-EEeecc------------cccCCCccceeEEEeCC-CeEEEEEeCCCC---
Confidence 4566777789999999999999775442 222211 01246666777776665 699999999864
Q ss_pred cccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccc
Q psy574 427 SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506 (977)
Q Consensus 427 ~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~ 506 (977)
.+.+|.|+|+...... .....|.... ......+.+.+|.|++.|.|+|+|.|..|.|.++ .....+....
T Consensus 127 -~i~~Y~v~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~--~~~~~t~~~~ 196 (290)
T 3l5i_A 127 -SVKKYILEWCVLSDKA------PCITDWQQED-GTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE--SIKAYLKQAP 196 (290)
T ss_dssp -CCCEEEEEEEEECSSS------CCCCEEEEEE-TTCSEEECCSCCCTTCEEEEEEEEEETTEECCCE--EEEEESSCCC
T ss_pred -CCCcEEEEEEECCCCC------CCCcCeEEcc-CCCcceEEecCcCCccEEEEEEEEEeCCcccccE--EEEeEccccC
Confidence 7899999998765432 0112576653 4455677889999999999999999999988642 1222221222
Q ss_pred cccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEec
Q psy574 507 SEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGL 582 (977)
Q Consensus 507 p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~ 582 (977)
| . .| ..+.+...+.++|.|+|+++ .++.|.+|+|+|+..
T Consensus 197 P----~---------~~------------------------p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~ 239 (290)
T 3l5i_A 197 P----S---------KG------------------------PTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 239 (290)
T ss_dssp C----S---------SC------------------------CCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEET
T ss_pred C----C---------CC------------------------CeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeC
Confidence 2 1 11 13667889999999999944 678899999999987
Q ss_pred CCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEecc
Q psy574 583 DPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637 (977)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~ 637 (977)
+. .+....+ ....++++|.+|.|++.|.|+|+|.|..| |+.|..+.|+|.
T Consensus 240 ~~--~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T~ 289 (290)
T 3l5i_A 240 IG--NETAVNV--DSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 289 (290)
T ss_dssp TS--CCEEEEE--ETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEECC
T ss_pred CC--CeEEEEe--CCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEeecC
Confidence 63 3433332 36788999999999999999999999999 888999999886
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=183.42 Aligned_cols=206 Identities=18% Similarity=0.243 Sum_probs=127.6
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-----CCeEEEEEcC--eeee
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-----PPSTFWMLEG--NRSL 230 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-----~~~i~W~~~g--~~~~ 230 (977)
++.+|+|.|+|.|. |.....+.+.+..++.+...|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+.
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~ 87 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK 87 (254)
T ss_dssp ------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence 78899999999998 444455566666678888888899999999999999999887 4899999854 2111
Q ss_pred --e-----cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCc
Q psy574 231 --I-----YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPAN 302 (977)
Q Consensus 231 --~-----~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~ 302 (977)
. .......++.+... .+...|.|.+++.+|+|.|+ |.|.|..+... ..+.|.|... ..+|.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~ 163 (254)
T 2c1o_A 88 RLIYLVSKLDSGDPDRFTGSGS-GTDFTLKISRVEAEDLGIYY-CVQGSHFPPTFGAGTKLELKRA--DAAPTVSIFPPS 163 (254)
T ss_dssp EEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEE-EEECSSSSCEEBCCEEEEECCC--CBCCEEEEECCC
T ss_pred EEEEeccccCCCccceEEEecC-CCEEEEEECcCCcccCEEEE-EEEEcCcceEecCCEEEEECCC--CCCCeeEeecCC
Confidence 0 11122467776652 35569999999999999999 99999866432 2345666542 224665543333
Q ss_pred eeecCCCcEEEEEEEcc--C--ceEEEEECCEEcCCC--CcEEE--------ecCceEEEeccCCCCCeEEEEEEEcCCC
Q psy574 303 QTLPLRSEARLRCQVRG--E--GSVQWWRGEREVGSG--PRVNV--------TGDGSLVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 303 ~~v~~g~~~~L~C~~~~--~--p~i~W~~~g~~l~~~--~~~~~--------~~~~sl~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
.....|+.++|.|.+.+ + +.+.|+++|..+... .+... ...+.|.|.++...|.|.|+|.|.|...
T Consensus 164 ~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 164 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 33446789999999988 3 359999999887554 11111 1124699999999999999999999876
Q ss_pred ce
Q psy574 369 SA 370 (977)
Q Consensus 369 ~~ 370 (977)
..
T Consensus 244 ~~ 245 (254)
T 2c1o_A 244 TS 245 (254)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=173.29 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=131.6
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++..+.. .+..|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 75 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE 75 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc
Confidence 457888888888899999999999999888775 6999999998874 467899999999999999999988654
Q ss_pred eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEE
Q psy574 176 KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 176 ~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I 254 (977)
+..+.|.|..++.+.. +....+.+|+.++|.|.+. +.|.+.+.|+++|..+.... ....|.|
T Consensus 76 --s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i 138 (176)
T 1f2q_A 76 --SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------------ENHNISI 138 (176)
T ss_dssp --CCCEEEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------------CSSEEEE
T ss_pred --cccEEEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------------CCCeEEE
Confidence 4556777775555443 3446888999999999994 66777999999998763211 1239999
Q ss_pred eecccCCCCeEEEEEEEcCCCc-eeEEEEEEEEC
Q psy574 255 QNVSRTAAPLIILCLGVNAAGS-DLARASLTVSG 287 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~ 287 (977)
.+++.+|+|.|+ |.|.|..+. .+..+.|.|..
T Consensus 139 ~~v~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 139 TNATVEDSGTYY-CTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp SSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred CCCCcccCEEEE-EEEEeCCcceEecCEEEEEec
Confidence 999999999999 999997443 44557888887
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=175.03 Aligned_cols=193 Identities=12% Similarity=0.150 Sum_probs=135.9
Q ss_pred CCCCCCeEEeeC--CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 399 GPPTKPTLVNQT--ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 399 ~~P~~~~v~~~~--~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
++|.++.+..++ .+++.|+|.+|. ++.+.+|.|+|+...... .|..........+++|.+|.|++
T Consensus 1 s~P~~l~v~~v~~~~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t 67 (201)
T 2ha1_A 1 SGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVG----------RWKEATIPGHLNSYTIKGLKPGV 67 (201)
T ss_dssp CCCCEEECCSCSCCSSCEEEEEECCS---STTCCEEEEEEEETTCSS----------CCEEEEECTTCCEEEECSCCTTE
T ss_pred CCceeEEEEecCCCCCEEEEEEeCCC---CCCceEEEEEEEECCCCC----------ceEEEecCCCccEEEecCCCCCC
Confidence 367788888877 899999999983 568999999998755432 67776666678899999999999
Q ss_pred eEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeC
Q psy574 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMT 556 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~ 556 (977)
.|.|+|+|.|..|.+.++ ...+++....+...... ... ...+| ++..+.++++...+
T Consensus 68 ~Y~~~V~a~n~~G~~~~~--~~~~~t~~~~~~~~~~~-~~~-~~~~~-------------------p~~~~~~l~~~~~~ 124 (201)
T 2ha1_A 68 VYEGQLISIQQYGHQEVT--RFDFTTTSTSTPVTSNT-VTG-ETTPF-------------------SPLVATSESVTEIT 124 (201)
T ss_dssp EEEEEEEEECTTSCEEEE--EEEEEECCCCCTTCSCC-CCC-SCCCC-------------------CCSCSCCSSCCCCC
T ss_pred EEEEEEEEEecccccCce--eEEEecCCCCCCccccc-ccC-CCCCC-------------------CCccCCceEEEecC
Confidence 999999999999988653 12222211111000000 000 00011 01112467888899
Q ss_pred CCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCC
Q psy574 557 STSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 557 ~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.++|.|+|++| .+.+.+|.|+|+............+ ....+++.|.+|+|++.|.|+|+|+|..|.|.+..
T Consensus 125 ~~sv~l~W~~p-~~~i~~Y~v~~~~~~~~~~~~~~~v--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s 195 (201)
T 2ha1_A 125 ASSFVVSWVSA-SDTVSGFRVEYELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLIL 195 (201)
T ss_dssp SCCEEEECCCS-CTTEEEEEEEEEETTTCCCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEE
T ss_pred CCeEEEEEeCC-CCCccEEEEEEEECCCCCceeEEEc--CCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEe
Confidence 99999999998 4479999999997643332222333 36788999999999999999999999999886544
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=183.86 Aligned_cols=181 Identities=15% Similarity=0.263 Sum_probs=131.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEeec-------CCCceEEEecCc---EEEEcCCC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPIDF-------ENSKRLRLVDGT---NLAIQDSR 69 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~~-------~~~~r~~~~~~g---~L~I~~v~ 69 (977)
...|...|.++.+.+|++|+|.|.+ .+.|.+.|.|+|++ +.+.. ....|+.+..++ +|.|.+++
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 90 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ 90 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence 3457778989999999999999999 77888999999954 22211 124577665433 79999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcCC--------------eEEeCCCceEEeCCCeEEEEEEecccC--ceEEEE
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP--------------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHW 133 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P--------------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W 133 (977)
.+|+|.|+|.+.|..+...+..+.|.|..+| .++..|....+.+|++++|.|.+.|.+ .+.+.|
T Consensus 91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W 170 (276)
T 3auv_A 91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW 170 (276)
T ss_dssp GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence 9999999999998765433444677777543 234456678899999999999998766 589999
Q ss_pred EECC--eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEeCC---ee--EEEEEEE
Q psy574 134 KRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAENAV---GK--ISASATL 183 (977)
Q Consensus 134 ~k~~--~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~---g~--~~~~~~L 183 (977)
+|++ ..+ ..+++.+..+ .+|.|.+++.+|+|.|+|.|.|.. +. .....+|
T Consensus 171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l 250 (276)
T 3auv_A 171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLV 250 (276)
T ss_dssp EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEE
T ss_pred EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEE
Confidence 9963 111 1345555432 379999999999999999999973 21 2234566
Q ss_pred EEe
Q psy574 184 TVQ 186 (977)
Q Consensus 184 ~V~ 186 (977)
.|.
T Consensus 251 ~V~ 253 (276)
T 3auv_A 251 TVS 253 (276)
T ss_dssp EEC
T ss_pred EEc
Confidence 665
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=180.67 Aligned_cols=179 Identities=23% Similarity=0.360 Sum_probs=127.3
Q ss_pred cceEEeCCCcEEEEEECCCCCCC-----CeEEEEeCCEEe-----------ecCCCceEEEec------CcEEEEcCCCC
Q psy574 13 KSQRVAAGDTALLECGPPRGHPE-----PTLVWKKNGHPI-----------DFENSKRLRLVD------GTNLAIQDSRK 70 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~-----~~v~W~k~g~~l-----------~~~~~~r~~~~~------~g~L~I~~v~~ 70 (977)
..+.+.+|++++|.|.+ .+.|. +.|.|+|++... .....+|+.+.. +++|.|.+++.
T Consensus 3 ~~v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~ 81 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV 81 (222)
T ss_dssp CCCCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred CCEEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence 45789999999999998 55543 789999987433 123345676654 56799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEEC-CeeCCCCc-
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRL-GSAMPEDR- 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~-~~~l~~~~- 144 (977)
+|+|.|+|.+.+... .+..+.|.|..+ |.+...+ ...+.+|+.+.|.|.+ .|.|.+.+.|+++ +..+....
T Consensus 82 ~D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~ 158 (222)
T 4i0k_A 82 TDEGSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT 158 (222)
T ss_dssp GGCSCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred ccCEEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence 999999999998632 344556777654 5555544 4477899999999999 8899999999995 44443321
Q ss_pred eEEe--ccc---eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC
Q psy574 145 MSVL--PSR---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP 195 (977)
Q Consensus 145 ~~~~--~~~---~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p 195 (977)
.... .++ .|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.....+
T Consensus 159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 214 (222)
T 4i0k_A 159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPE 214 (222)
T ss_dssp EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--------
T ss_pred eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCc
Confidence 1111 222 38899999999999999999999999999999999877654443
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=176.64 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=116.9
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE---EeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS---VLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+...... ...++.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 56778777764 8899999999999988776 99999999877532111 1245789999999999999999999987
Q ss_pred eeE--EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccE-EEEEccCC
Q psy574 175 GKI--SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI-QAEITSDG 248 (977)
Q Consensus 175 g~~--~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~-~~~~~~~g 248 (977)
|.. +..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+... ... ........
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~-----~~~~~~~~~~~~ 154 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSW-----TLDSQLTPSGQF 154 (196)
T ss_dssp EECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEE-----EEECEECTTSCE
T ss_pred CcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccc-----ccccccccCCCc
Confidence 743 4567888876 45665544 35788999999999999988 899999999765310 000 01000011
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
...|.|.+++.+|+|.|+ |.|.|..+
T Consensus 155 ~~~L~I~~v~~~D~G~Y~-C~a~n~~~ 180 (196)
T 2d3v_A 155 QALFPVGPVTPSHRWMLR-CYGSRRHI 180 (196)
T ss_dssp EEEEECCCCBTTBCEEEE-EEEEETTE
T ss_pred eeEEEeeecCcccCeeEE-EEEEccCC
Confidence 248999999999999999 99999765
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=167.94 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=121.3
Q ss_pred ccceEEeCCCcEEEEEEC-CCCCCCCeEEEEe--CCEEeec--------CCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGP-PRGHPEPTLVWKK--NGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~-~~g~P~~~v~W~k--~g~~l~~--------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+..+.+.+|++|+|.|.. +.+.|.+.|.|+| ++..|.. ..+.|+.+..+|+|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 456889999999999944 3345678999999 9887721 2356888888999999999999999999999
Q ss_pred EecCceee-eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 81 KNVAGTRE-STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 81 ~n~~g~~~-s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
.|..|... ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.|.|++++..+ .. ....|.+.
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-----~~~~i~~~ 151 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-----SQRVITHK 151 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-----ESSCEEEE
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-----CCcEEEEe
Confidence 99887654 35677888753 33222 3447999999998889999999999887 11 23345443
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
. ..+|+|.|+|.|.|..+..+....+
T Consensus 152 ~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 152 W-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp C-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred c-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 3 5789999999999999987666554
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=177.68 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=126.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCC---E-------------EeecCCCceEEEec---CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG---H-------------PIDFENSKRLRLVD---GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g---~-------------~l~~~~~~r~~~~~---~g~L~I 65 (977)
+.+...| .+.+.+|++++|.|.+ .+. |.+.|.|+|+. . ........|+.+.. +++|.|
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI 79 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence 4556667 8999999999999999 677 88999999931 1 11111234666543 346999
Q ss_pred cCCCCCCCeEEEEEEEecCc----eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
.+++.+|+|.|+|.+.+..| ......+.|.|. .+|.+...+....+..|+.++|.|.+.| .|.+ .|.|+|
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k 159 (218)
T 3s96_B 80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA 159 (218)
T ss_dssp SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE
Confidence 99999999999999998765 223445688888 5677766555555667899999999987 5666 899999
Q ss_pred CCeeCCCCceE---------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 136 LGSAMPEDRMS---------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 136 ~~~~l~~~~~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
++..+..+... ......|.|.....+|+|.|+|.|.|..+.....+
T Consensus 160 ~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 160 NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 99988642100 11123488888888899999999999987665543
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=179.28 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=130.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEec---CcEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVD---GTNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~---~g~L~I~~v~~~ 71 (977)
.+...| .+.+.+|++++|.|.+ . |.+.|.|+|+ +..+. .....|+.+.. +++|.|.+++.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~-~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 78 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTG-T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTD 78 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEEC-C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEE-C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChh
Confidence 455566 8999999999999999 4 8889999994 22211 01234665432 347999999999
Q ss_pred CCeEEEEEEEecCc-eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECCeeCCCCc
Q psy574 72 DDGRYQCVVKNVAG-TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 72 D~G~Y~C~a~n~~g-~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~ 144 (977)
|+|.|+|.+.|..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |.+.+.|+|++..+..+.
T Consensus 79 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 158 (211)
T 3tv3_L 79 DEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV 158 (211)
T ss_dssp GCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred HCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCc
Confidence 99999999999887 345566788888 67888777766666689999999999875 358999999999876421
Q ss_pred e----EEe------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 145 M----SVL------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 145 ~----~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
. ... ....|.|.++..+|.|.|+|.|.|..+...+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 159 ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp EECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred ccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 1 111 1246999999999999999999999877665543
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-19 Score=180.16 Aligned_cols=182 Identities=19% Similarity=0.313 Sum_probs=142.7
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeC-------------CCCceEEeccceEEEccCccCCCeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-------------PEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l-------------~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
++.+...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+ ...++... +..|.|.+++.+|+|.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGT 82 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcE
Confidence 455667788889999999999999999899999999987652 12344443 3889999999999999
Q ss_pred EEEEEEeCCe--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCc----cc
Q psy574 166 YVCEAENAVG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDR----VD 238 (977)
Q Consensus 166 Y~C~a~n~~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~----~~ 238 (977)
|+|.+.|..| ..+..+.|.|..+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....... ..
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence 9999999865 4566788899988888777777789999999999997 899999999999998764322110 01
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE--EEEEE
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR--ASLTV 285 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~--~~l~V 285 (977)
++... ...+.|.|.+++.+|+|.|+ |.|.|..|....+ +.|.|
T Consensus 163 ~~~~~---~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLN---PTTGELVFDPLSASDTGEYS-CEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCC---TTTCCEEESSCCGGGCCCEE-EEEECSSSCCEECCCBCCEE
T ss_pred ceEEc---CCcceEEEEeccccCCeEEE-EEEeCCcCcccccccEEEEE
Confidence 22211 12348999999999999999 9999999988433 34444
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=174.70 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=129.2
Q ss_pred CCCceEEeCC--CeEEEEEEecccCceEEEEEEC---CeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 105 GPKDTTVSAS--SIIVFECSVGGDAVLTVHWKRL---GSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 105 ~p~~~~v~~G--~~v~l~C~v~g~p~~~i~W~k~---~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
.|..+.+.+| +++.|.|.+.+ |.+.+.|+++ +..+..+ ++....+..|.|.+++.+|+|.|+|.|.|..+...
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence 3567789999 99999999976 7789999885 5555543 34444667899999999999999999998544433
Q ss_pred -EEEEEEEee--CCeEEecCCCc-EEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEE---ccCCc
Q psy574 179 -ASATLTVQM--APIVRERPSDL-RLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEI---TSDGM 249 (977)
Q Consensus 179 -~~~~L~V~~--~p~~~~~p~~~-~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~---~~~g~ 249 (977)
..+.|.|.. +|.+...+... .+.+|+.++|.|.+.+.|. +.+.|++++..+..... ...+..... .....
T Consensus 92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL-VNRDLKTQSGSEMKKFL 170 (213)
T ss_dssp CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE-EEEEECCCSSCSCEEEE
T ss_pred EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE-eccccccccCccceeee
Confidence 236777754 44555555554 8999999999999998653 57999999876421000 000000000 00112
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 171 ~~L~I~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYT-CAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp EEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEEECCCCcccCEEEE-EEEecCCCcEEEEEEEEEec
Confidence 48999999999999999 99999999999999999987
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=164.86 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|++|.++.+..++.+++.|+|.+|.. .+.+|.|+|+..+. .+..........++.+.+|.|+
T Consensus 5 t~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~~------------~~~~~~~~~~~~~~~i~~L~p~ 68 (186)
T 1qr4_A 5 TDLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSG------------KKNEMEIPVDSTSFILRGLDAG 68 (186)
T ss_dssp ---CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTC------------CEEEEEECTTCSEEEEESCCSS
T ss_pred CCCcCCCceEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCCC------------CeeEEECCCCCCEEEECCCCCC
Confidence 4589999999999999999999998843 67899999984321 4444444566789999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+. ...+.+ .+ . +| .++++...
T Consensus 69 t~Y~~~V~a~~~~~~s~~~--~~~~~t---~p----~---------~P------------------------~~l~~~~~ 106 (186)
T 1qr4_A 69 TEYTISLVAEKGRHKSKPT--TIKGST---VV----G---------SP------------------------KGISFSDI 106 (186)
T ss_dssp CEEEEEEEEESSSCBCCCE--EEEEEC---CC----C---------CC------------------------SCEEEESC
T ss_pred CEEEEEEEEEcCCccCCCE--EEEEEC---CC----C---------CC------------------------CccEEEEe
Confidence 9999999999976555431 111222 11 1 22 35788889
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++|. +.+.+|.|+|+..+. ..+....+. ....++.|.+|+|++.|.|+|+|.+..|.|.+.. ..++
T Consensus 107 ~~~sv~l~W~~p~-~~i~~Y~v~~~~~~~-~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~ 181 (186)
T 1qr4_A 107 TENSATVSWTPPR-SRVDSYRVSYVPITG-GTPNVVTVD--GSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILK 181 (186)
T ss_dssp CSSCEEEEECCCS-SCCSEEEEEEEETTC-CCCEEEEEE--TTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCEEEEEEECCC-CcccEEEEEEEeCCC-CCceEEEcC--CCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEE
Confidence 9999999999885 459999999998774 333333333 5778999999999999999999999999886533 5566
Q ss_pred ccC
Q psy574 636 TLE 638 (977)
Q Consensus 636 T~~ 638 (977)
|..
T Consensus 182 T~p 184 (186)
T 1qr4_A 182 TAL 184 (186)
T ss_dssp C--
T ss_pred ecC
Confidence 654
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=180.89 Aligned_cols=179 Identities=20% Similarity=0.300 Sum_probs=130.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CE---Eee-----------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PID-----------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l~-----------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+ +. .+. .....|+.+..+ .+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMN 83 (257)
T ss_dssp EEECCSEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEEC
Confidence 45667899999999999998 6664 689999995 22 110 112457776532 479999
Q ss_pred CCCCCCCeEEEEEEEecCc-------e-eeeEeEEEEEEcCC---------------eEEeCCCceEEeCCCeEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKNVAG-------T-RESTDAVLRVLVKP---------------YIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g-------~-~~s~~~~l~V~~~P---------------~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
+++.+|+|.|+|.|.|..| . .....+.|.|..+| .+...|....+.+|++++|.|.+
T Consensus 84 ~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~ 163 (257)
T 1f3r_B 84 SLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG 163 (257)
T ss_dssp SCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC
T ss_pred CCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE
Confidence 9999999999999998754 1 12244578887653 34445667788999999999999
Q ss_pred cccCceEEEEEE--CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 124 GGDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 124 ~g~p~~~i~W~k--~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
.+.|.+.+.|+| ++..+. ..++.+. ...+|.|.+++.+|+|.|+|.|.|........+.|.|
T Consensus 164 ~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V 243 (257)
T 1f3r_B 164 SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLEL 243 (257)
T ss_dssp SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECC
T ss_pred CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEE
Confidence 988888999999 554331 2455443 2347999999999999999999997522334456766
Q ss_pred eeCC
Q psy574 186 QMAP 189 (977)
Q Consensus 186 ~~~p 189 (977)
...+
T Consensus 244 ~~~~ 247 (257)
T 1f3r_B 244 KAAE 247 (257)
T ss_dssp SSSC
T ss_pred eCCC
Confidence 6444
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=176.43 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=123.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEee-------cCCCceEEEecC---cEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID-------FENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~-------~~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|+. +.+. .....|+.+... .+|.|.+++.
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ 83 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence 345667888999999999999999 78888999999953 1111 122356655433 2799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcC-------------------CeEEeCCCceEEeCCCeEEEEEEecccC--ce
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------------------PYIIRGPKDTTVSASSIIVFECSVGGDA--VL 129 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~-------------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~ 129 (977)
+|+|.|+|.+.|..+......+.|.|..+ +.+...|....+.+|++++|.|.+.+.+ .+
T Consensus 84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 163 (250)
T 3esu_F 84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS 163 (250)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence 99999999999876654445567777653 3445556778899999999999998766 78
Q ss_pred EEEEEEC--CeeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 130 TVHWKRL--GSAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 130 ~i~W~k~--~~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+.|+|+ +..+ ..+|+.+..+ .+|.|.+++.+|+|.|+|.+.+
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 9999997 3322 1145555432 2699999999999999999997
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=180.47 Aligned_cols=180 Identities=18% Similarity=0.271 Sum_probs=130.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE---e------------ecCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP---I------------DFENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~---l------------~~~~~~r~~~~~~-----g~L~ 64 (977)
..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|. +.. + ......|+.+..+ .+|.
T Consensus 6 v~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 84 (256)
T 3umt_A 6 LQQSGLELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLE 84 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred EEccCceEEcCCCCEEEEEEE-ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEE
Confidence 345667889999999999998 5655 679999983 221 1 0112356766643 2499
Q ss_pred EcCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEEc----------------CCeEEeCCCceEEeCCCeEEEEEEecc
Q psy574 65 IQDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVLV----------------KPYIIRGPKDTTVSASSIIVFECSVGG 125 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~~----------------~P~~~~~p~~~~v~~G~~v~l~C~v~g 125 (977)
|.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+...|....+.+|++++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 164 (256)
T 3umt_A 85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ 164 (256)
T ss_dssp ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence 99999999999999999872 11223456788875 677888888899999999999999998
Q ss_pred cCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 126 DAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 126 ~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
.+.+.+.|+|+. ..+ ..+++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|.
T Consensus 165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 888899999952 211 12444433 2246999999999999999999986543 3445778777
Q ss_pred eCC
Q psy574 187 MAP 189 (977)
Q Consensus 187 ~~p 189 (977)
.++
T Consensus 245 ~~~ 247 (256)
T 3umt_A 245 RAA 247 (256)
T ss_dssp ---
T ss_pred CCC
Confidence 544
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=174.12 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=128.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC---E--Eee-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG---H--PID-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g---~--~l~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ . .+. .....|+.+.. +.+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES 80 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence 456677889999999999999999 67789999999832 1 111 11245666553 34799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEE---EcCCeEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCCc-
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDR- 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V---~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~~- 144 (977)
+|+|.|+|.|.|..+......+.|.| ..+|.+...+....+..|+.++|.|.+.|.+ .+.+.|+|++..+..+.
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 160 (213)
T 3r06_A 81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVL 160 (213)
T ss_dssp GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred ccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceE
Confidence 99999999999876555555677888 5678887777666677899999999997754 35899999999886532
Q ss_pred eEE--e--c------cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MSV--L--P------SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~~--~--~------~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
... . . ...|.|.....+|.|.|+|.|.|...
T Consensus 161 ~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~ 201 (213)
T 3r06_A 161 QSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS 201 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred eccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence 111 1 1 13688888888999999999999763
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=168.38 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=120.9
Q ss_pred eEEeCCCeEEEEEEec--ccCceEEEEEECCeeC-----------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 109 TTVSASSIIVFECSVG--GDAVLTVHWKRLGSAM-----------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~--g~p~~~i~W~k~~~~l-----------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.+.+|++++|.|... +.+.+.|.|+|++..+ ..+++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 4678999999999542 2567899999998643 24677777788899999999999999999999988
Q ss_pred eE--EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEE
Q psy574 176 KI--SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253 (977)
Q Consensus 176 ~~--~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~ 253 (977)
.. +..+.|.|..++. .......+..++|.|.+.+.|.+.+.|+++|..+... . .+.
T Consensus 86 ~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~---------------~--~~~ 143 (176)
T 1hng_A 86 TRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------------R--QKT 143 (176)
T ss_dssp CEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE---------------S--SSE
T ss_pred CEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC---------------C--cEE
Confidence 75 6778888876432 1112234556999999999999999999999876421 1 245
Q ss_pred EeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
|.++..+|+|.|+ |.|.|..|.....+.|.+
T Consensus 144 i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 144 MSYQWTNLRAPFK-CKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EEEECSCCSSCEE-EEEEETTEEEEEEECCCC
T ss_pred EEEEEccCCeEEE-EEEEecCCCceecccccC
Confidence 6678899999999 999999998887766544
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=175.63 Aligned_cols=176 Identities=18% Similarity=0.287 Sum_probs=128.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEe---------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPI---------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l---------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ ..+ ......|+.+..+ .+|.|
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 85 (247)
T 2ghw_B 7 VQSGGGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM 85 (247)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EecCCEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence 45667999999999999998 6666 6789999842 111 1123457776542 47999
Q ss_pred cCCCCCCCeEEEEEEEecCcee-eeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEecccCce
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVGGDAVL 129 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~ 129 (977)
.+++.+|+|.|+|.|.|..+.. ....+.|.|..+ +.+...|....+.+|++++|.|.+.+.|.+
T Consensus 86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 165 (247)
T 2ghw_B 86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS 165 (247)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT
T ss_pred CcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc
Confidence 9999999999999999873321 234457888753 345666778889999999999999998888
Q ss_pred EEEEEE--CCeeC-------------CCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 130 TVHWKR--LGSAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 130 ~i~W~k--~~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
.+.|+| ++..+ ...++.+. ...+|.|.+++.+|+|.|+|.|.|.... ......|.|.
T Consensus 166 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 166 NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999999 45433 12345443 2346999999999999999999986433 3344566665
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-18 Score=170.64 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=121.0
Q ss_pred ceEEeCCCcEEEEEECCC---CCCCCeEEEEeCCEEeecC----------CCceEEE--ecCcEEEEcCCCCCCCeEEEE
Q psy574 14 SQRVAAGDTALLECGPPR---GHPEPTLVWKKNGHPIDFE----------NSKRLRL--VDGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~g~~l~~~----------~~~r~~~--~~~g~L~I~~v~~~D~G~Y~C 78 (977)
.+.+.+|++++|.|.+.. +.|.+.+.|+|++..+... ..+|..+ ..+++|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 578999999999998832 3467899999999887311 1234443 235689999999999999999
Q ss_pred EEEecCceee----eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe--
Q psy574 79 VVKNVAGTRE----STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL-- 148 (977)
Q Consensus 79 ~a~n~~g~~~----s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~-- 148 (977)
.|.|..|... ...+.|.|..+ |.+... ....|+.+.|.|.+ .|.|.|.|.|+|++..+........
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~ 158 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD 158 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence 9999765433 34567777765 333221 12458899999999 5999999999999998875433332
Q ss_pred cc-ceE---EEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 149 PS-RSL---QLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 149 ~~-~~L---~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
.+ +.+ .+..+..+|.|.|+|.|.|..+..++.+.+
T Consensus 159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 22 222 234556789999999999999887766554
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=177.13 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=125.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC----CCeEEEEeCC--E---Eee-------cCCCceEEEecC---cEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG--H---PID-------FENSKRLRLVDG---TNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k~g--~---~l~-------~~~~~r~~~~~~---g~L~I~~ 67 (977)
.|...|.++.+.+|++|+|.|.+ .+.| .+.|.|+|++ . .+. .....|+.+..+ .+|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP 81 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ceEeeCCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence 46778889999999999999999 6777 7899999952 2 111 112456766543 2799999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG-- 137 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~-- 137 (977)
++.+|+|.|+|.+.|..+...+..+.|.|..++ .+...|....+.+|++++|.|.+.|.| .+.+.|+|+.
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g 161 (240)
T 1moe_A 82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPE 161 (240)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCC
Confidence 999999999999998865444455788887643 355567788899999999999998876 4589999962
Q ss_pred eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 138 SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 138 ~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+ ...++.+..+ .+|.|.+++.+|+|.|+|.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 221 1235554422 4799999999999999999984
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=170.61 Aligned_cols=170 Identities=12% Similarity=0.178 Sum_probs=133.2
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeC--------------------CCCceEEeccceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l--------------------~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
+....+.+|+++.|.|.+.+.+.+.+.|+|++... ..++..+..+++|.|.+++.+|+|.
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~ 85 (208)
T 3r4d_A 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV 85 (208)
T ss_dssp EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence 34467899999999999888888999999975422 1345556667899999999999999
Q ss_pred EEEEEEeCC-eeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 166 YVCEAENAV-GKISASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 166 Y~C~a~n~~-g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|+|.+.+.. +.....+.|.|..+ |.+...+.. +.+|+.++|.|.+.+.| +.+.|++++..+. ...++.
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~-----~~~~~~ 157 (208)
T 3r4d_A 86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ-----LTERMT 157 (208)
T ss_dssp EEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC-----CCSSEE
T ss_pred EEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC-----CCCCeE
Confidence 999999985 56778888999855 455544444 88999999999999876 7999999998763 234555
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
+... ...|.|.++..+|+|.|+ |.|.|..|... ..+.|.|..
T Consensus 158 ~~~~---~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 158 LSQN---NSILRIDPIKREDAGEYQ-CEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp EETT---TTEEEESSCCGGGCEEEE-EEEECTTCCEECCCEEECCC-
T ss_pred EcCC---CCEEEEeccCHHhCeEEE-EEEecCCCcccCCceeeeEEe
Confidence 4432 248999999999999999 99999999864 345666555
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=169.76 Aligned_cols=159 Identities=17% Similarity=0.187 Sum_probs=124.7
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++.. ....++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 77 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW 77 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence 356777777764 8899999999999987 7789999999876 2236788999999999999999999998764
Q ss_pred --EEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 177 --ISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 177 --~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
.+..+.|.|. .+|.+...| ...+.+|+.++|.|.+.+.+ +.+.|+|+|..+.. ..+... ....
T Consensus 78 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~-----~~~~~~-----~~~~ 145 (184)
T 2gi7_A 78 SLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPY-----KNPERW-----YRAS 145 (184)
T ss_dssp BCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTS-----CCCCEE-----EEES
T ss_pred cCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcc-----eecCCC-----ceEE
Confidence 3456778875 356676666 55778999999999987654 69999999976532 111111 1238
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCc
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
|.|.+++.+|+|.|+ |.|.|..+.
T Consensus 146 L~i~~v~~~D~G~Y~-C~a~n~~~~ 169 (184)
T 2gi7_A 146 FPIITVTAAHSGTYR-CYSFSSRDP 169 (184)
T ss_dssp SSEEEETTCCSEEEE-EEEECTTST
T ss_pred EEEccCCccCCeEEE-EEEEeCCCC
Confidence 999999999999999 999998653
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=171.73 Aligned_cols=174 Identities=19% Similarity=0.248 Sum_probs=131.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~ 161 (977)
|.+...| ...+.+|++++|.|.+.+.|.+.+.|+|. +... ..+++.+. .+.+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 3455566 78999999999999999999999999993 2211 22355432 3457999999999
Q ss_pred CCeEEEEEEEeCCe---eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeec
Q psy574 162 DAGEYVCEAENAVG---KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIY 232 (977)
Q Consensus 162 D~G~Y~C~a~n~~g---~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~ 232 (977)
|+|.|+|.|.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|..+...
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG 160 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence 99999999999887 45667889998 78888887777766699999999999885 33 499999999876421
Q ss_pred CCC-----ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 233 PGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 233 ~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
... ..+.+... +.|.|..++.+|.|.|+ |.|.|..+....++
T Consensus 161 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 161 VKTTQPSKSDSKYMAT------SYLTMTADAWKSRNTFI-CKVTHGGNTVEKSL 207 (213)
T ss_dssp EEECCCEEETTEEEEE------EEEEEESHHHHSCSCEE-EEEEETTEEEEEEE
T ss_pred cccCCcCccCCcEEEE------EEEEEeHHHcCCCCEEE-EEEEECCccEEeee
Confidence 000 11122221 37999999999999999 99999986655443
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=175.92 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=126.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-------cCCCceEEEe---cCcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLV---DGTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-------~~~~~r~~~~---~~g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ . .+. .....|+.+. .+++|.|.+++.
T Consensus 25 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 25 IQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceEEeCCCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 345666888999999999999999 67788999999842 1 111 1224566655 345799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecc-cC-ceEEEEEECCeeCCCCce
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGG-DA-VLTVHWKRLGSAMPEDRM 145 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p-~~~i~W~k~~~~l~~~~~ 145 (977)
+|+|.|+|.+.+..+......+.|.|. .+|.+...+....+.+|+.++|.|.+.| .| .+.|.|+|++..+..+..
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~ 183 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 183 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence 999999999988765444455677774 5667766555555567999999999977 45 589999999998865321
Q ss_pred E-----------EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 146 S-----------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 146 ~-----------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
. ......|.|..+..+|.|.|+|.|.|....
T Consensus 184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 1 111245889999999999999999998653
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=175.81 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=122.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
..+.+.|.++.+.+|++|+|.|.+ .+.|.+.|.|+|+. . .+. .....|+.+.. +.+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence 356788999999999999999999 78888999999953 1 111 11245676653 24799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcCCe-------------EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPY-------------IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKR 135 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~-------------~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k 135 (977)
+|+|.|+|.+.|..+...+..+.|.|..+|. ++..+....+.+|++++|.|.+.+.+ .+.+.|+|
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 9999999999987554334456788876553 34444456799999999999998875 57899999
Q ss_pred CC--eeC-----------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 136 LG--SAM-----------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 136 ~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+. ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 53 221 134555432 248999999999999999999873
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=164.84 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=129.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|....+.+|+++.|.|.+.+.| .+.+.|+|++..+... ...+.|.+++.+|+|.|+|.+.|.. .
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~--~ 75 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTS--L 75 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSB--C
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCC--c
Confidence 45666777778899999999999998876 6789999999988753 4567788999999999999998754 3
Q ss_pred EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEee
Q psy574 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256 (977)
Q Consensus 178 ~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~ 256 (977)
+..+.|.|..++.+... ....+.+|+.++|.|.+ .+.|.+.+.|+++|..+.... ....|.|.+
T Consensus 76 s~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~ 140 (170)
T 3ry4_A 76 SDPVHLTVLFEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------------LDPTFSIPQ 140 (170)
T ss_dssp CCCEEEEEECCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------------SCCEEEESS
T ss_pred eEeEEEEEECCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------------CCCeEEEEe
Confidence 45677888877755544 45678899999999999 456668999999998764211 123899999
Q ss_pred cccCCCCeEEEEEEEcCCCc-eeEEEEEEE
Q psy574 257 VSRTAAPLIILCLGVNAAGS-DLARASLTV 285 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V 285 (977)
++.+|+|.|+ |.|.|..|. .+..+.|.|
T Consensus 141 v~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 141 ANHSHSGDYH-CTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp CCGGGCEEEE-EEEEETTEEEECCCEEEEE
T ss_pred ccccCCEEEE-EEEEeCcCccccccEEEEE
Confidence 9999999999 999999886 334445554
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.75 E-value=7.6e-18 Score=173.58 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=121.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
+.. |.++.+.+|++++|.|.+..+.+ .+.|.|+|++ ..+. .....|+.+..+ .+|.|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 82 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG 82 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc
Confidence 344 88899999999999999524443 5799999953 2211 112356666532 37999999999
Q ss_pred CCeEEEEEEEecCc-eeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-c
Q psy574 72 DDGRYQCVVKNVAG-TRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-R 144 (977)
Q Consensus 72 D~G~Y~C~a~n~~g-~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~ 144 (977)
|+|.|+|.|.|..+ ......+.|.|. .+|.+...+.......|+.++|.|.+.| .|.+ .|.|+|++..+..+ .
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 162 (216)
T 2xzc_L 83 DEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 162 (216)
T ss_dssp GCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred cCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCee
Confidence 99999999999876 223344567776 4566665443333346999999999987 5554 89999999988765 1
Q ss_pred eEE--e--cc------ceEEEccCccCCCeEEEEEEEeCCee
Q psy574 145 MSV--L--PS------RSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 145 ~~~--~--~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
... . .+ ..|.|..+..+|+|.|+|.|.|....
T Consensus 163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 163 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred EecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 111 1 11 26899999999999999999997643
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=177.46 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=125.8
Q ss_pred EeCCCceEEeCCCeEEEEEEecc---cCceEEEEEECCeeC-------------------------------CCCceEEe
Q psy574 103 IRGPKDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAM-------------------------------PEDRMSVL 148 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g---~p~~~i~W~k~~~~l-------------------------------~~~~~~~~ 148 (977)
...+.++.+.+|++++|.|.+.+ .|.+.|.|+|++... ..+|..+.
T Consensus 6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 85 (250)
T 2fbo_J 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA 85 (250)
T ss_dssp ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence 34455778999999999999987 788999999987543 12233332
Q ss_pred c--cceEEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEeeC---CeEEec-CCCcEEeeCCeEEEEEEEecCCC
Q psy574 149 P--SRSLQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQMA---PIVRER-PSDLRLEVGRDAVFLCGIEGSPP 217 (977)
Q Consensus 149 ~--~~~L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~---p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~ 217 (977)
. +.+|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+ |.+... +....+.+|+.++|.|.+.+.|.
T Consensus 86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~ 165 (250)
T 2fbo_J 86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN 165 (250)
T ss_dssp CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT
T ss_pred cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC
Confidence 2 358999999999999999999997663 366888998864 344333 44457778999999999999999
Q ss_pred CeEEEEEcCeeeeecCCCc-------------------cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 218 PSTFWMLEGNRSLIYPGDR-------------------VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 218 ~~i~W~~~g~~~~~~~~~~-------------------~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|.+.|++++..+....... ..+.... +...|.|.+++.+|+|.|+ |.|.|..|..
T Consensus 166 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~ 239 (250)
T 2fbo_J 166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS----GARNLVIRAAKITDAGRVW-CELATGQGEL 239 (250)
T ss_dssp CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE----TTTEEEECSCCGGGCEEEE-EEEESSSSGG
T ss_pred CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC----CccEEEEecCCcccCEEEE-EEecCCcccc
Confidence 9999999987663211100 0111111 2249999999999999999 9999966543
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=163.88 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEee------------cCCCceEEE-ecCcEEEEcCCCCCCCeEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPID------------FENSKRLRL-VDGTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~------------~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~ 77 (977)
...+.+.+|++|+|.|.+....+.+.|.|+|+ +..+. ....+|+.+ ..+++|.|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 45689999999999998733345789999994 43321 112268888 56789999999999999999
Q ss_pred EEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 78 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
|.+.+.. .....+.|.|..++. .......++.++|.|.+ .| |.+.|.|+|++..+. ...+.+|.+.
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~~~~l~~~ 152 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLRQKTMSYQ 152 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EESSSEEEEE
T ss_pred EEEEcCC--eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCCCCEEEEE
Confidence 9998765 445677888876421 11122345779999999 66 999999999998875 1245567763
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
. .+|+|.|+|.|.|..+...+...+
T Consensus 153 ~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 153 W--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp C--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred E--hhcCccEEEEEecCcCccccceeE
Confidence 3 789999999999999876655443
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=165.65 Aligned_cols=162 Identities=17% Similarity=0.216 Sum_probs=123.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+. .+.+.|+|++..+... ......+..|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 80 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence 35777777766 89999999999999754 4689999999876421 1111245789999999999999999999876
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
+. .+..+.|.|.. +|.+...| ...+.+|+.++|.|.+.+. .+.+.|+|+|..+.. ... .. ...
T Consensus 81 ~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~-------~~~-~~--~~~ 148 (188)
T 1oll_A 81 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-------QRG-YG--KVQ 148 (188)
T ss_dssp EECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE-------EEE-EC--SSE
T ss_pred CCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc-------ccc-CC--Cce
Confidence 53 34567788874 56666656 4678999999999998764 568999999976532 011 11 233
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|.|.+++.+|+|.|+ |.|.|..
T Consensus 149 ~~L~I~~v~~~d~G~Y~-C~a~n~~ 172 (188)
T 1oll_A 149 AEFPLGPVTTAHRGTYR-CFGSYNN 172 (188)
T ss_dssp EEEEEEECCGGGCEEEE-EECEEET
T ss_pred eEEEECCCCcCCCcEEE-EEEEcCC
Confidence 59999999999999999 9999865
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=174.35 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=111.7
Q ss_pred EeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.+|++++|.|.+ |.+.|.|+|||..+... ...+++|.|.+++.+|+|.|+|.+.+.. +..+.|.|
T Consensus 15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v 80 (204)
T 1sy6_A 15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYY 80 (204)
T ss_dssp CCSSSEEEEEECS----CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEE
T ss_pred ecCCCeEEEEEcC----CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEE
Confidence 3689999999987 78899999999998432 1246789999999999999999975432 23345555
Q ss_pred E---------------------------c----CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--
Q psy574 97 L---------------------------V----KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-- 143 (977)
Q Consensus 97 ~---------------------------~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-- 143 (977)
. . ++.+...| .....+|++++|.|. |.|.+.|.|+|++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~ 157 (204)
T 1sy6_A 81 RMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDED 157 (204)
T ss_dssp EC------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTT
T ss_pred EEeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccC
Confidence 4 0 22222223 223348999999998 7888999999999887542
Q ss_pred -ceEEeccceEEEccC-ccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 144 -RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 144 -~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+.....++.|.|.++ +.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 158 ~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 158 DKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp CTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 222235789999999 999999999999999886 345555554
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=176.83 Aligned_cols=177 Identities=19% Similarity=0.329 Sum_probs=130.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L 63 (977)
+..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+. .....|+.+.. +++|
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 107 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYL 107 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence 4567889999999999999998 5664 6899999953 2110 11235776653 2579
Q ss_pred EEcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEec
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
.|.+++.+|+|.|+|.+.|..|. .....+.|.|..+ +.+...|....+.+|++++|.|.+.
T Consensus 108 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~ 187 (282)
T 1qok_A 108 QLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSAS 187 (282)
T ss_dssp EECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEES
T ss_pred EECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEec
Confidence 99999999999999999988651 1223457888764 3456667788899999999999999
Q ss_pred ccCceEEEEEE--CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 125 GDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 125 g~p~~~i~W~k--~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+.+ +.+.|+| ++..+. ..++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|
T Consensus 188 ~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 188 SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence 888 8999999 554431 2455443 2347999999999999999999875432 334566776
Q ss_pred e
Q psy574 186 Q 186 (977)
Q Consensus 186 ~ 186 (977)
.
T Consensus 267 ~ 267 (282)
T 1qok_A 267 K 267 (282)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=172.99 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=121.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--EE---ee-------cCCCceEEEecC---cEEEEc
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HP---ID-------FENSKRLRLVDG---TNLAIQ 66 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~~---l~-------~~~~~r~~~~~~---g~L~I~ 66 (977)
.+...|.++.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. +. .....|+.+..+ .+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEecCCeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 46678889999999999999999 6666 6899999842 21 11 112456666532 379999
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC-------------eEEeCCCceEEeCCCeEEEEEEecccC--ceEE
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-------------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTV 131 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P-------------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i 131 (977)
+++.+|+|.|+|.+.|..+...+..+.|.|..++ .++..+....+.+|++++|.|.+.+.+ .+.+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 161 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM 161 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence 9999999999999998765433445678887642 234444455799999999999998764 5689
Q ss_pred EEEECC--eeC------------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 132 HWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 132 ~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.|+|++ ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999963 111 134555532 248999999999999999999985
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=185.49 Aligned_cols=326 Identities=14% Similarity=0.090 Sum_probs=208.8
Q ss_pred CCCCCCCCCeEEeeCC-CceEEEEEcCCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eec--CcCeEE--
Q psy574 396 TYPGPPTKPTLVNQTA-NGLTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNV--PSPILT-- 468 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~-~sv~lsW~~p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~--~~~~~~-- 468 (977)
..|.+|..+.+..... .++.|+|...... .......|.|+..+.... +..|.... ..+ ....+.
T Consensus 83 ~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~i~i~r~~~~---------~~v~~~~~~~~~~~~~~~~~w~ 153 (483)
T 3e0g_A 83 LIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESM---------ELVKLVTHQTTLNGKDTLHHWS 153 (483)
T ss_dssp ECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEEEEEEESSSSC---------EEEEEEEEEECGGGCCEEEEEE
T ss_pred eccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEEEEEEEEcCCc---------cEEEEEEEEEEecCCCceEEEE
Confidence 5688888888776665 7899999987552 223457799988765433 12443322 222 222222
Q ss_pred -EEcc-CCCCeEEEEEEEE-c---CCCCCCCCCCCceEEeecccc---ccccccCC---------------c--------
Q psy574 469 -VTNL-TVGLTYTFLVRAL-N---SHGLSAPSPLSDEIVLRGTFS---EGIFSEGG---------------K-------- 516 (977)
Q Consensus 469 -i~~L-~p~t~Y~~~V~a~-n---~~G~s~~S~~s~~~~~~~~~p---~~~p~~~~---------------~-------- 516 (977)
-++| .+.+.|.++||+. | -.|.+.+|.++......+... -..|..+. +
T Consensus 154 w~s~~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~~~~~ifP~~~vv~~GS~vt~~Ci~~~~~~~~~l~~ 233 (483)
T 3e0g_A 154 WASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGH 233 (483)
T ss_dssp EECSSCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCCCCSSCCEESCSEEEETTCCEEEEECCSSCEEEEESSS
T ss_pred ecCCCCCCCCccEEEEEEEecccccCCCCCCcCCCChhhccccCCCCcEEeccCCEEeCCCCEEEEEEeCccccceecCc
Confidence 2233 4688999999998 3 356555666664444422111 11122100 0
Q ss_pred ----ceeec----------CCCCCCCcchHH------HHhhcc-cccCCceEEEEEeeEeCCCeEEEEEEec-CCC----
Q psy574 517 ----GIFSE----------NFPDEGRGESLR------RARQHL-QEGGGSLIELTEVKPMTSTSVKLTWEIL-NTD---- 570 (977)
Q Consensus 517 ----~~~~~----------~P~~~~~g~~~~------~~~~~l-~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~---- 570 (977)
.+.+. -+.....|.... .....+ .+.++.+|+++.+...+.++++++|+++ ..+
T Consensus 234 ~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~~~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~ 313 (483)
T 3e0g_A 234 TNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGP 313 (483)
T ss_dssp CCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESSCEEEEEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGG
T ss_pred ccceeEEecCCEEEEEEeCCCCccCccceEEEecCCcccceEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCC
Confidence 00000 000000111000 000111 1145556899999999999999999998 222
Q ss_pred ccceEEEEEEecCCCCCceEEEEee--cCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCcee
Q psy574 571 YIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLT 648 (977)
Q Consensus 571 ~i~~Y~v~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v 648 (977)
..+.|.|+|+..+. ........ .+....+.|.+|.+++.|.|+|.|.|..|.+. +. ..+...+.+++.||.++
T Consensus 314 ~~t~YtL~y~~~g~---~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~-~~~~~~~~VkP~PP~nl 388 (483)
T 3e0g_A 314 RATSYTLVESFSGK---YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST-ILVNITEKVYPHTPTSF 388 (483)
T ss_dssp GCCEEEEEETTTCC---EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE-EEECGGGGBCCCCCEEE
T ss_pred CCeeEEEEEEECCC---CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc-eEEEeccccCCCCCeee
Confidence 27899999986532 11111110 12456789999999999999999999998875 33 56666666666799999
Q ss_pred EEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEecC---CcCeEEecCCCCCceEEEEEEEEcCCCc
Q psy574 649 DPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVSA---STPTLLLTNLSAGIRYSVSLAATNRAGT 724 (977)
Q Consensus 649 ~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~~---~~~~~~l~~L~p~t~Y~~~V~A~~~~G~ 724 (977)
++...+++++.|+|++| ...++.+..|+|+|+..+.. .+....+.+ ...++.|.+|+|++.|.|+|||. ..|.
T Consensus 389 ~v~~~~stsl~LsW~~P--~~~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~ 465 (483)
T 3e0g_A 389 KVKDINSTAVKLSWHLP--GNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETF 465 (483)
T ss_dssp EECCSSSSSCCEEEECC--SCCTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSC
T ss_pred EEEEecCCeEEEEECCC--CCCCCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCC
Confidence 99877889999999999 55677889999999986633 233333332 23467899999999999999999 6776
Q ss_pred ---CCCCCceEEeecCC
Q psy574 725 ---GPYSRPALLSLTSG 738 (977)
Q Consensus 725 ---g~~S~~~~~~t~~~ 738 (977)
|+||+++.|+|.++
T Consensus 466 g~WSeWS~~~~f~T~E~ 482 (483)
T 3e0g_A 466 WKWSKWSNKKQHLTTEA 482 (483)
T ss_dssp CCCCCCCCCCCCCCCCC
T ss_pred CCcCCCCCceeeECCCC
Confidence 78999999988654
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=176.26 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=130.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee------------ecCCCceEEEecC-----
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI------------DFENSKRLRLVDG----- 60 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~----- 60 (977)
.+.|...|..+.+.+|++|+|.|.+ .+ .|.+.|.|+|.. . .+ .....+|+.+..+
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQA-SGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred ceEEEEecCCceecCCCeEEEEEEe-ecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 4677888999999999999999998 44 367899999732 1 11 1122357777632
Q ss_pred cEEEEcCCCCCCCeEEEEEEEec-----------CceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCC
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNV-----------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSAS 114 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~-----------~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G 114 (977)
.+|.|.+++.+|+|.|.|.+.+. ........+.|.|.. +|.+...|....+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 25999999999999999999986 122233456788876 4567778888999999
Q ss_pred CeEEEEEEecccCc-eEEEEEEC--CeeC-------------CCCceEEec---cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 115 SIIVFECSVGGDAV-LTVHWKRL--GSAM-------------PEDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 115 ~~v~l~C~v~g~p~-~~i~W~k~--~~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
++++|.|.+.+.+. +.+.|+|. +..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|...
T Consensus 165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 99999999988776 89999984 2221 124444432 24699999999999999999998543
Q ss_pred e-EEEEEEEEE
Q psy574 176 K-ISASATLTV 185 (977)
Q Consensus 176 ~-~~~~~~L~V 185 (977)
. ......|.|
T Consensus 245 ~~~g~gt~l~V 255 (256)
T 3juy_B 245 YTFGQGTKLER 255 (256)
T ss_dssp CEECCCEEEEE
T ss_pred ceEcCCEEEEE
Confidence 2 223344544
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=167.60 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=121.6
Q ss_pred CCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCC------------------CCceEEe------ccceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMP------------------EDRMSVL------PSRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~------------------~~~~~~~------~~~~L~I~~v 158 (977)
+..+.+.+|++++|.|.+.+.+.+ .|.|+|++.... ..|.... .+.+|.|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 345788999999999999765543 799999764211 1233332 2357999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecCCCcc
Q psy574 159 RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+.+|+|.|+|.|.|..+.....+.+.+. +.+...+....+.+|+.+.|.|.+.+ .|.|.|.|++++..+.. .
T Consensus 91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~-----~ 163 (226)
T 4f80_A 91 TASDSGKYLCYFQDGDFYEKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP-----T 163 (226)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC-----C
T ss_pred chHHCeeEEEEEECCCcEEEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC-----C
Confidence 9999999999999998877665555544 33333344567889999999999988 59999999997654431 1
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........+|. ..+.+..++.+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 164 ~~~~~~~~~~g~~~v~s~l~v~~~d~G~Yt-C~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 164 VEAPVVADGVGLYAVAASVIMRGSSGEGVS-CTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp EECCCEECTTSCEEEEEEEEECC----CEE-EEEEETTTTEEEEEEECCCT
T ss_pred CceEEEECCCCcEEEEEEEEechhcCcEEE-EEEEeCCCCeEEEEEEEECC
Confidence 111122222343 34455678889999999 99999999999998888865
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=174.84 Aligned_cols=179 Identities=16% Similarity=0.258 Sum_probs=130.4
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee--------cCCCceEEEe-----cCcEEEEcC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID--------FENSKRLRLV-----DGTNLAIQD 67 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~--------~~~~~r~~~~-----~~g~L~I~~ 67 (977)
..+...|..+.+.+|++|+|.|.+ .+.|.+.|.|+|.. . .+. .....|+.+. .+.+|.|.+
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 82 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS 82 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred cEEEecCceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence 456778889999999999999999 67799999999832 1 111 0123455552 134699999
Q ss_pred CCCCCCeEEEEEEEecCce---eeeEeEEEEEEc--------------------CCeEEeCCCceEEeCCCeEEEEEEec
Q psy574 68 SRKTDDGRYQCVVKNVAGT---RESTDAVLRVLV--------------------KPYIIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~---~~s~~~~l~V~~--------------------~P~~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
++.+|+|.|+|.+.|..+. .....+.|.|.. +|.+...|....+.+|++++|.|.+.
T Consensus 83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 162 (256)
T 3tf7_C 83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQT 162 (256)
T ss_dssp CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEEC
T ss_pred CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcC
Confidence 9999999999999987541 123345777775 56788889888999999999999998
Q ss_pred ccCceEEEEEECCe--eC----------------CCCceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEE--EE
Q psy574 125 GDAVLTVHWKRLGS--AM----------------PEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKIS--AS 180 (977)
Q Consensus 125 g~p~~~i~W~k~~~--~l----------------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~ 180 (977)
+. .+.+.|+|... .+ ..+++... ...+|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~g 241 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEG 241 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCC
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCC
Confidence 76 67899999431 10 01233332 234799999999999999999999876532 23
Q ss_pred EEEEEe
Q psy574 181 ATLTVQ 186 (977)
Q Consensus 181 ~~L~V~ 186 (977)
.+|.|.
T Consensus 242 t~l~v~ 247 (256)
T 3tf7_C 242 SKLTVL 247 (256)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 455555
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=169.49 Aligned_cols=175 Identities=17% Similarity=0.266 Sum_probs=128.2
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
+...|..+.+.+|+++.|.|.+.+.|.+.|.|+|++. .+ ..+++.+.. ..+|.|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 4455778889999999999999999888999998642 11 124555542 34899999999999
Q ss_pred eEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec-C---
Q psy574 164 GEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY-P--- 233 (977)
Q Consensus 164 G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~-~--- 233 (977)
|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+... .
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 163 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW 163 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence 99999999987653 3345777774 777777555555558999999999987 5655 89999999876421 0
Q ss_pred ---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 234 ---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 234 ---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
....+.+.. .+.|.|.++..+|.|.|+ |.|.|..........+
T Consensus 164 ~~~~~~~~~~~~------~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 164 TDQDSKDSTYSM------SSTLTLTKDEYERHNSYT-CEATHKTSTSPIVKSF 209 (213)
T ss_dssp CCCCTTTCCEEE------EEEEEEEHHHHHHCCEEE-EEEECTTCSSCEEEEE
T ss_pred CCccCCCCCEEE------EEEEEEeccccCCCCEEE-EEEEEccCCCceEEEe
Confidence 001112221 138999999999999999 9999987765444333
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=173.51 Aligned_cols=172 Identities=16% Similarity=0.241 Sum_probs=121.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ....+|+.+.. +++|.|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI 83 (219)
T ss_dssp EECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred eCCCCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence 46778999999999999998 5554 689999996 43321 11245777653 358999
Q ss_pred cCCCCCCCeEEEEEEEecCce---eeeEeEEEEEEcC----CeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT---RESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~---~~s~~~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~ 136 (977)
.+++.+|+|.|+|.+.+..+. .....+.|.|... |.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 163 (219)
T 1c1e_H 84 NNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 163 (219)
T ss_dssp CSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeC
Confidence 999999999999999987631 2224567888753 55554443445678999999999988 8988 9999999
Q ss_pred CeeCCC---CceE----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 137 GSAMPE---DRMS----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 137 ~~~l~~---~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+..+.. .... ....+.|.|.... .|.|.|+|.|.|..+.......|
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 164 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp TBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEEC
T ss_pred CcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEec
Confidence 876531 1100 0112468884444 46699999999988765444443
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=171.99 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=131.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE---eccc--eEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSR--SLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~---~~~~--~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.+...|. ..+.+|++++|.|.+.+ +.+.|.|+|++..+....... .... .|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 4678887776 58899999999999976 678999999987664221111 1345 899999999999999999999
Q ss_pred CCee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 173 AVGK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 173 ~~g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
..+. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.+.+.+.|+|+|..+.. .. . .. .
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~------~~-~-~~--~ 154 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP------QH-Q-SG--E 154 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC------SE-E-EC--S
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc------cc-c-CC--C
Confidence 7653 34557788874 55666555 56889999999999777778889999999976531 11 1 11 1
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCC-----ceeEEEEEEEEC
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLARASLTVSG 287 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-----~~~~~~~l~V~~ 287 (977)
....|.|.+++.+|+|.|+ |.|.|... ..+..+.|.|.+
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYR-CYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp SSEEEECCSCCGGGCEEEE-EEEECTTSTTEECCCCCCEEEEEC-
T ss_pred ccCEEEEccCCcccCEEEE-EEEEcCCCCCcCCCCCCcEEEEEec
Confidence 2349999999999999999 99998643 233456677766
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-17 Score=166.20 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=126.1
Q ss_pred CCCceEEeCCCeEEEEEEecccCc-----eEEEEEECCeeC---------C-------CCceEEecc------ceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAV-----LTVHWKRLGSAM---------P-------EDRMSVLPS------RSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~-----~~i~W~k~~~~l---------~-------~~~~~~~~~------~~L~I~~ 157 (977)
++..+.+.+|+++.|.|.+.+.|. ..+.|+|++..+ . .++..+..+ .+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 455668899999999999977663 489999975221 1 234444422 4899999
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
++.+|+|.|+|.+.| .+.....+.|.|..++..........+.+|+.++|.|.+.|.|.+.+.|++++..... ..
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~----~~ 161 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS----GK 161 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC----CE
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec----Cc
Confidence 999999999999999 5667778899998766543222223567899999999999999999999999433321 11
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........++. ....+..+...|.|.|+ |.|.|..|.....+.|.|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~-C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 162 TTTTNSKREEKLFNVTSTLRINTTTNEIFY-CTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp EEEEECC----CEEEEEEEEEECCTTCEEE-EEEEETTTTEEEEEEEECCC
T ss_pred cceEEEcCCCCCEEEEEEEEEeccCCcEEE-EEEEeCccceeeEEEEEecC
Confidence 111111111221 12223345678999999 99999999999999999886
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=162.27 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=115.3
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEe-cCcEEEEcCCCCCCCeEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+..+.+.+|++|+|.|.+ . .|.+.|.|+|++..+.. ...+|+.+. .+++|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 79 (171)
T 1ccz_A 2 SQQIYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79 (171)
T ss_dssp EEEEEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred ccEEEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEE
Confidence 346889999999999988 4 48899999999875521 123466664 5789999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCC---eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc
Q psy574 81 KNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P---~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~ 157 (977)
.|..| +..+.|.|..++ .+..... ...|.|.+.+.|.+.|.|+|++..++.. ....|.+.
T Consensus 80 ~n~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~l~~~- 142 (171)
T 1ccz_A 80 PNITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ- 142 (171)
T ss_dssp TTCCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSEEEEE-
T ss_pred eCCCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCC-----cceEEEEe-
Confidence 88777 466788888653 2222111 1379999998899999999999887532 22334444
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
...|+|.|+|.|.|..+..++.+.|.
T Consensus 143 -~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 143 -WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp -CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred -ccCCCceEEEEEEcccCcccceeEEe
Confidence 36789999999999999877665543
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=174.18 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=117.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-------cCCCceEEEecC---cEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-------FENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-------~~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
...+|..+.+.+|++|+|.|.+ .+. |.+.|.|+|++ . .+. .....|+.+..+ .+|.|.+++.
T Consensus 5 ~v~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (256)
T 3ux9_B 5 VLTQPPSVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQS 83 (256)
T ss_dssp CCBCCSEEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred eEecCCcEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCCh
Confidence 3445667999999999999999 555 78899999842 1 111 112356666543 2699999999
Q ss_pred CCCeEEEEEEEecCce--eeeEeEEEEEEcCCe--------------------EEeCCCceEEeCCCeEEEEEEecccC-
Q psy574 71 TDDGRYQCVVKNVAGT--RESTDAVLRVLVKPY--------------------IIRGPKDTTVSASSIIVFECSVGGDA- 127 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~~P~--------------------~~~~p~~~~v~~G~~v~l~C~v~g~p- 127 (977)
+|+|.|+|.+.+..+. .....+.|.|..++. .+..+....+.+|++++|.|.+.+.+
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~ 163 (256)
T 3ux9_B 84 EDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTF 163 (256)
T ss_dssp GGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCG
T ss_pred hhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcc
Confidence 9999999999986532 223456788876542 23334455689999999999998766
Q ss_pred -ceEEEEEECC--eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEeCC
Q psy574 128 -VLTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 128 -~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+.+.|+|++ ..+ ..+|+.+..+ .+|.|.+++.+|+|.|+|.|.|..
T Consensus 164 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 164 SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred cccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 7899999973 211 1125554422 359999999999999999999863
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-18 Score=178.02 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=124.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--EE---e-------ecCCCceEEEecCc---EEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HP---I-------DFENSKRLRLVDGT---NLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~~---l-------~~~~~~r~~~~~~g---~L~I 65 (977)
..+...|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. + ......|+.+..++ +|.|
T Consensus 35 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 35 VLMTQTPLSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred cEEEeCCceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 345566888999999999999999 6666 6899999954 11 1 11224567665433 7999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAM 140 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l 140 (977)
.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|++..+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999987654334445777764 566666444444557999999999987 4543 79999999987
Q ss_pred CCC-ceEE----ecc------ceEEEccCccCCCeEEEEEEEeCCee
Q psy574 141 PED-RMSV----LPS------RSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 141 ~~~-~~~~----~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+ .... ..+ ..|.|.++..+|+|.|+|.|.|....
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 654 1111 122 35999999999999999999997643
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=171.43 Aligned_cols=171 Identities=15% Similarity=0.237 Sum_probs=123.6
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e-ec-------------CCCceEEEec---C--cEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I-DF-------------ENSKRLRLVD---G--TNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l-~~-------------~~~~r~~~~~---~--g~L 63 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ .. + .. ...+|+.+.. . .+|
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 83 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVA-SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYL 83 (220)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred eccCCEEEcCCCeEEEEEEE-cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEE
Confidence 45778999999999999998 5555 6899999953 21 1 11 0135777653 2 379
Q ss_pred EEcCCCCCCCeEEEEEEEecCcee--eeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTR--ESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKR 135 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~--~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k 135 (977)
.|.+++.+|+|.|+|.+.+..+.. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++
T Consensus 84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 163 (220)
T 1pz5_B 84 QMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY 163 (220)
T ss_dssp EECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred EEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEec
Confidence 999999999999999999875432 1244678876 34665554444456789999999999887 888 999999
Q ss_pred CCeeCC---CCc----eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 136 LGSAMP---EDR----MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 136 ~~~~l~---~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
++..+. ... ......+.|.|.++..+| |.|+|.|.|..+..++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 164 GALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp GTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 886411 111 111234679999998866 9999999999987665544
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=164.13 Aligned_cols=156 Identities=16% Similarity=0.235 Sum_probs=125.4
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---------------CCceEEec------cceEEEccCccCCCeEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVLP------SRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---------------~~~~~~~~------~~~L~I~~v~~~D~G~Y 166 (977)
.+.+.+|++++|.|.+.+.|.+.+.|+|++..+. ..++.... ..+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 4578899999999999989999999999986311 12333321 34599999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
+|.+.|..+ .+.|.|.. +. .+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 84 ~C~~~~~~~----~~~l~V~~---~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--------------- 140 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFG---LT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------------- 140 (184)
T ss_dssp EEEETTEEE----EEEEEEEE---EE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE---------------
T ss_pred EEEEEcCCC----cEEEEEEE---ec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc---------------
Confidence 999987654 45666663 22 24556889999999999999999999999998865411
Q ss_pred CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 247 ~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
....|.|.+++.+|+|.|+ |.|.|..+.....+.|.|.+.
T Consensus 141 -~~~~L~i~~v~~~d~G~Y~-C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 141 -GGKTLSVSQLELQDSGTWT-CTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp -ESSEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC
T ss_pred -CceEEEEecCCcCCCeEEE-EEEEECCceEEEEEEEEEEec
Confidence 1239999999999999999 999999999999999999884
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=175.23 Aligned_cols=202 Identities=21% Similarity=0.248 Sum_probs=129.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEec---ccCceEEEEEECCeeCCC-------------------CceEEe-----ccce
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVG---GDAVLTVHWKRLGSAMPE-------------------DRMSVL-----PSRS 152 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~---g~p~~~i~W~k~~~~l~~-------------------~~~~~~-----~~~~ 152 (977)
+.+...+....+.+|+++.|.|.+. +.+.+.|.|+|++..... ++..+. .+.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4556667788999999999999997 788899999997654321 333332 2378
Q ss_pred EEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE---ecCCCCeEEEEEcCe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEGN 227 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~---~g~p~~~i~W~~~g~ 227 (977)
|.|.+++.+|+|.|+|.+.|..+. ....+.|.|. ...|....+.+|+.++|.|.+ .+.|.+.+.|++++.
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~-----~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~ 160 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL-----PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG 160 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE-----CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe-----ccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence 999999999999999999987654 4555666664 124556789999999999999 667899999999532
Q ss_pred eee-----------------ecCCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCC
Q psy574 228 RSL-----------------IYPGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289 (977)
Q Consensus 228 ~~~-----------------~~~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~ 289 (977)
... ........++.+... ..+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~~- 238 (268)
T 3mj6_A 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT-CSIYVGKLESRKTIVLHVVQD- 238 (268)
T ss_dssp TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC-
T ss_pred CCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEE-EEEEcCCceEEEEEEEEEEcC-
Confidence 210 000011112222110 012358999999999999999 999999998888899998653
Q ss_pred CCCCCeEEeCCCceeecCCCcE
Q psy574 290 PNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 290 ~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
+|.+...|.+.++..|+.+
T Consensus 239 ---~p~~~~~p~~~~~~~~q~~ 257 (268)
T 3mj6_A 239 ---EFQRTISPTPPTDKGQQGI 257 (268)
T ss_dssp ----------------------
T ss_pred ---CCeeeeCCCCCCCCcceec
Confidence 5666677777776666543
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=170.35 Aligned_cols=176 Identities=21% Similarity=0.292 Sum_probs=130.5
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEeec--------------CCCceEEEe----------cCcEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDF--------------ENSKRLRLV----------DGTNL 63 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~~--------------~~~~r~~~~----------~~g~L 63 (977)
.|.++.+..|++|+|.|.+ .+.|.+ .|.|+|++..+.. ....|..+. .+++|
T Consensus 7 vp~~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL 85 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL 85 (225)
T ss_dssp CCSEEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred eCCEEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence 3667999999999999998 566655 4899997644310 112233222 23579
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE 142 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~ 142 (977)
.|.+++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|.+.+.|++++..+..
T Consensus 86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~ 165 (225)
T 4fmk_A 86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAK 165 (225)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEE
T ss_pred EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccC
Confidence 999999999999999999988877767777888888877777766677778888888776 6788899999999766533
Q ss_pred CceEEe-c------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEee
Q psy574 143 DRMSVL-P------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQM 187 (977)
Q Consensus 143 ~~~~~~-~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~ 187 (977)
...... . .+.|.|.++..+|+|.|+|.|.|..+. .+..+.|.|+.
T Consensus 166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence 222111 1 246999999999999999999998775 45566666653
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=171.82 Aligned_cols=169 Identities=17% Similarity=0.277 Sum_probs=128.9
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCC--------------CCceE----------EeccceEEEcc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMP--------------EDRMS----------VLPSRSLQLSD 157 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~--------------~~~~~----------~~~~~~L~I~~ 157 (977)
+..|.+..+.+|+++.|.|.+.+.+. +.+.|+|++.... ..+.. +..++.|.|.+
T Consensus 4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~ 83 (231)
T 2pet_A 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE 83 (231)
T ss_dssp CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence 34577889999999999999998885 8999998765422 22333 55567799999
Q ss_pred CccCCCeEEEEEEEeCC-eeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeE-EEEEEE-ecCCCCeEEEEEcCeeeee
Q psy574 158 VRLEDAGEYVCEAENAV-GKISASATLTVQMA---PIVRERPSDLRLEVGRDA-VFLCGI-EGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~-g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v-~L~C~~-~g~p~~~i~W~~~g~~~~~ 231 (977)
++.+|+|.|+|.+.+.. +..+..+.|.|..+ |.+...+....+.+|+.+ +|.|.+ .+.|.+.+.|++++..+..
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~ 163 (231)
T 2pet_A 84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV 163 (231)
T ss_dssp CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence 99999999999999987 77888999999976 455666666778899988 999999 8999999999999987753
Q ss_pred cCCCccccEEEEE----ccCC----ceEEEEeecccCCCCeEEEEEEEcC
Q psy574 232 YPGDRVDNIQAEI----TSDG----MNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 232 ~~~~~~~~~~~~~----~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
... ...++.+.. ...| .+.|.|.....+|.|.|+ |.|.|.
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~-C~a~n~ 211 (231)
T 2pet_A 164 PVE-MNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFH-CAAHYS 211 (231)
T ss_dssp CSS-CCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEE-EEEEEE
T ss_pred ccc-cccceeecceeEecCCCeEEEEEEEEEecchhhCCceEE-EEEEcC
Confidence 221 112333322 1111 146888866666799999 999995
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=161.34 Aligned_cols=180 Identities=12% Similarity=0.100 Sum_probs=136.6
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|+++++...+.. ..|+|++| .++.+ .|.|+|+.. ..|...... ...+.+.|++|.+++.|.|+|+|.+..+
T Consensus 5 P~nv~~~s~n~~-~iL~W~pp~~~~~~v-~Y~V~y~~~---~~w~~~c~~--~~~~~c~lt~l~~~~~Y~~rV~A~~~~~ 77 (201)
T 3lqm_A 5 PENVRMNSVNFK-NILQWESPAFAKGQL-TFTAQYLSY---RIFQDKCMQ--TTLTECDFSSLSKYGDHTLRVRAEFADE 77 (201)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSSSCC-EEEEEEEET---TEEEEEEEE--ESSSEEECTTSCSSSCEEEEEEEEETTE
T ss_pred CcccEEEEECCc-eEEEECCCCCCCCCe-EEEEEEEEC---CCcccCcCc--cCCCEEECCCCccCCCEEEEEEEecCCC
Confidence 378988888765 57999999 34444 599999986 367654333 3568999999999999999999999999
Q ss_pred eCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCe---------eeeEEEEEEEecCCcceEEEEec
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG---------VIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng---------~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
.|.++.. .|........+|| .+++.. ..++|.|.|.+|.. ..+| .+..|+|.|++++..... .+.
T Consensus 78 ~S~~s~~-~f~~~~~t~~~PP-~v~~~~-~~~si~v~w~~P~~-~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~--~~~ 151 (201)
T 3lqm_A 78 HSDWVQI-TFSPVDDTIIGPP-GMQVEV-LADCLHMRFLAPKI-ENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QIT 151 (201)
T ss_dssp ECCCEEE-EECHHHHSBCCCC-EEEEEE-ETTEEEEEEECCEE-ECSSCEEEHHHHCTTCEEEEEEEETTCCCCE--EEC
T ss_pred cCcceee-eeeecccCeeCCC-EEEEEE-eCCEEEEEEcCCCc-cCCCcccCHHHhCCceEEEEEEEECCCCcEE--EEE
Confidence 8888763 4533222223466 678754 46899999999942 2224 378999999885533222 344
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~~ 739 (977)
...+.++|.+|+|++.|.|+|+|++. .|.|.+|+++.++|....
T Consensus 152 ~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~~ 197 (201)
T 3lqm_A 152 PQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDE 197 (201)
T ss_dssp CSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCGG
T ss_pred ecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCCC
Confidence 67789999999999999999999997 789999999999987643
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=170.80 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=123.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e---ec---------CCCceEEEec-----CcEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I---DF---------ENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l---~~---------~~~~r~~~~~-----~g~L~ 64 (977)
..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. + .. ...+|+.+.. +.+|.
T Consensus 4 l~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (227)
T 1mju_H 4 LQQPGAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ 82 (227)
T ss_dssp EECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EcCCCCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEE
Confidence 346778999999999999998 5655 6789999853 22 1 00 1135777653 35799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
|.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 162 (227)
T 1mju_H 83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL 162 (227)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence 9999999999999999986432223445788874 3555443323356789999999999875 776 999999987
Q ss_pred eCCC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 139 AMPE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 139 ~l~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
.+.. ... .......|.|..+..+| |.|+|.|.|..+.......+.+..+|.-
T Consensus 163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~ 221 (227)
T 1mju_H 163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIK 221 (227)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC---
T ss_pred cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCC
Confidence 6521 111 11123579999998888 9999999998776666666666666543
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=166.05 Aligned_cols=169 Identities=18% Similarity=0.273 Sum_probs=123.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
+.. |....+.+|++++|.|.+.+.|.+.|.|+|++ ..+ ..+++.+.. ...|.|.+++.+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT 82 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence 344 78889999999999999999888899999953 221 124555442 24899999999999
Q ss_pred eEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec-----
Q psy574 164 GEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY----- 232 (977)
Q Consensus 164 G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~----- 232 (977)
|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+..|+.++|.|.+.| .|.+ .+.|+|+|..+...
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 162 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSV 162 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEE
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEcc
Confidence 99999999977643 2345677764 677776555544558999999999987 4544 89999999876321
Q ss_pred --CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 233 --PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 233 --~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.....+.+... +.|.|..++.+|+|.|+ |.|.|......
T Consensus 163 ~~~~~~~~~~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~ 203 (210)
T 1lk3_L 163 TDQDSKDSTYSMS------STLSLTKADYESHNLYT-CEVVHKTSSSP 203 (210)
T ss_dssp CCCCTTTCCEEEE------EEEEEEHHHHHTCCEEE-EEEECTTCSSC
T ss_pred CCccCCCCCEEEE------EEEEEChHHhccCCcEE-EEEEecCCCCe
Confidence 00011122222 38999999999999999 99999876543
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-17 Score=170.79 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=127.8
Q ss_pred eecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee-----------ecCCCceEEEecCc-----EEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI-----------DFENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l-----------~~~~~~r~~~~~~g-----~L~I 65 (977)
..+|.++.+.+|++|+|.|.+ .+ .|.+.|.|+|.. . .+ ......|+.+..++ +|.|
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSV-TGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEE-EESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCeEEcCCCcEEEEEEE-EcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 446778899999999999998 44 357899999832 1 11 01234577766432 6999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEEcC--------------CeEEeCCCceEEeCCCeEEEEEEecccCc
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVLVK--------------PYIIRGPKDTTVSASSIIVFECSVGGDAV 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~~~--------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~ 128 (977)
.+++.+|+|.|+|.+.|.. ....+..+.|.|..+ |.+...|....+.+|++++|.|.+.+.+.
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 170 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS 170 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence 9999999999999999862 112234567888764 66777788889999999999999988877
Q ss_pred e-EEEEEEC--CeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeC
Q psy574 129 L-TVHWKRL--GSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMA 188 (977)
Q Consensus 129 ~-~i~W~k~--~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~ 188 (977)
+ .+.|+|+ +..+. .+++... ...+|.|.+++.+|+|.|+|.|.+.... .....+|.|...
T Consensus 171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~ 250 (257)
T 3gkz_A 171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRA 250 (257)
T ss_dssp GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence 7 8999994 22221 1344333 2246999999999999999999875432 233456666633
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-18 Score=175.83 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=123.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.. |..+.+.+|++++|.|.+ .+.|.+.|.|+|+ |..+. .....|+.+..+ .+|.|.+++.+|
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 80 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPED 80 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGG
T ss_pred eEC-CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCccc
Confidence 444 888999999999999998 7788788999984 33321 111356665532 379999999999
Q ss_pred CeEEEEEEEecC-c-eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCc
Q psy574 73 DGRYQCVVKNVA-G-TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR 144 (977)
Q Consensus 73 ~G~Y~C~a~n~~-g-~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~ 144 (977)
+|.|+|.+.|.. + ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..+..+.
T Consensus 81 ~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~ 160 (212)
T 1nfd_E 81 EAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGV 160 (212)
T ss_dssp CSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSC
T ss_pred CEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCe
Confidence 999999999732 2 122334567774 45777665555556789999999999876 54 7999999998875432
Q ss_pred eE---------EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 145 MS---------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 145 ~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.. ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp BCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred ecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 10 111256999999999999999999998754
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=166.12 Aligned_cols=177 Identities=19% Similarity=0.236 Sum_probs=128.4
Q ss_pred eCCCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCCC-------------------CceEEe------ccceEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPE-------------------DRMSVL------PSRSLQL 155 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~~-------------------~~~~~~------~~~~L~I 155 (977)
..|..+.+.+|++++|.|.+.+.|.+ .|.|+|++..+.. +++... .+.+|.|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 45677889999999999999887654 5899998765432 111111 2357999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.+++.+|+|.|+|.+.+..+. ......+.+..++. ....+....+..|+.+.|.|.+.+.|.|.|.|++++..+....
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~ 163 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence 999999999999999886554 44445555554443 3344555677889999999999999999999999987764211
Q ss_pred CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+.........+.|.|.++..+|.|.|+ |.|.|..|.....+.+.|.
T Consensus 164 -----~~~~~~~~~~~s~L~i~~~~~~d~g~Yt-C~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 -----SFKHSRSAAVTSEFHLVPSRSMNGQPLT-CVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp -----EEECSSSEEEEEEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEECC
T ss_pred -----eEecCCcEEEEEEEEEeeCCHHhCeEEE-EEEEeCCCCeEEEEEEEEE
Confidence 1111000011248999999999999999 9999999988776665554
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=180.26 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=131.8
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEEC--CCCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~ 622 (977)
|+++++...+ .++.|+|++| .++.+. |.|+|+..+ ...|...........+.+.|+ +|.|++.|.|+|+|.|
T Consensus 7 P~nv~~~~~n-~~~iL~W~pp~~~~~~v~-Y~V~y~~~~-~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~n- 82 (306)
T 3s98_A 7 PQKVEVDIID-DNFILRWNRSDESVGNVT-FSFDYQKTG-MDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK- 82 (306)
T ss_dssp -CCCEEEEET-TEEEEECC--------CE-EEEEEEESS-CSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEEC-
T ss_pred CcEeEEEEEC-CeEEEEEcCCCCCCCCeE-EEEEEEECC-CCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEEe-
Confidence 3678888775 4578999999 345565 999999875 467865433322344566665 4689999999999999
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCC-----CCeeeeEEEEEEEecCCcceEEEEecCC
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGT-----HNGVIRTYQIIVGGGNNSALINMTVSAS 697 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~-----~ng~i~~Y~v~~~~~~~~~~~~~~~~~~ 697 (977)
.|.|+++....|.+.+.++.+||. +.+...+ ++|.|+|+||. .. .+|.+.+|+|.|++.+...... +...
T Consensus 83 ~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~-~si~v~w~P~~-~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~--~~~~ 157 (306)
T 3s98_A 83 ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAED-KAIVIHISPGT-KDSVMWALDGLSFTYSLVIWKNSSGVEER--IENI 157 (306)
T ss_dssp SSCEEEEECCCBCHHHHCBCCCCE-EEEEECS-SCEEEEEECC----CCCC-----CCEEEEEEEETTTCCCEE--EEEE
T ss_pred CCcCCCEeeeeEechhhCccCCCe-EEEEEcC-CEEEEEEECCC-CCCcceeccCCcEEEEEEEEECCCCCeEE--Eecc
Confidence 888877777788888777777885 8877644 68999999553 21 2688999999999866332222 2335
Q ss_pred cCeEEecCCCCCceEEEEEEEEc--CCCcCCCCCceEEeecCCC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATN--RAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~--~~G~g~~S~~~~~~t~~~~ 739 (977)
.+.++|.+|+|++.|.|+|+|+| .+|.|++|+++.++|....
T Consensus 158 ~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~ 201 (306)
T 3s98_A 158 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVEN 201 (306)
T ss_dssp CTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCC
T ss_pred cceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCC
Confidence 68999999999999999999999 7899999999999886543
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-17 Score=172.07 Aligned_cols=168 Identities=15% Similarity=0.264 Sum_probs=123.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC------CCeEEEEeC--CEE---ee-------cCCCceEEEec---CcEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP------EPTLVWKKN--GHP---ID-------FENSKRLRLVD---GTNL 63 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P------~~~v~W~k~--g~~---l~-------~~~~~r~~~~~---~g~L 63 (977)
.+.+...|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+ |.. +- .....|+.+.. ..+|
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L 83 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL 83 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence 3567778999999999999999998 6666 678999994 321 11 11245776653 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC------------------e-EEeCCCceEEeCCCeEEEEEEec
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------------------Y-IIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P------------------~-~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
.|.+++.+|+|.|+|.+.+..+......+.|.|..+| . .+..+....+.+|++++|.|.+.
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~ 163 (264)
T 2gjj_A 84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS 163 (264)
T ss_dssp EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence 9999999999999999998755333445678887653 1 22333445789999999999998
Q ss_pred ccCc--eEEEEEECC--ee---CC---------------CCceEEe-----ccceEEEccCccCCCeEEEEEEEeC
Q psy574 125 GDAV--LTVHWKRLG--SA---MP---------------EDRMSVL-----PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 125 g~p~--~~i~W~k~~--~~---l~---------------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+.+. +.+.|+|+. .. +. .+++.+. ...+|.|.+++.+|+|.|+|.+.|.
T Consensus 164 ~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 164 GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 7764 799999973 21 10 2344443 2358999999999999999999985
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=170.55 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=123.0
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---ee--------------cCCCceEEEec-----CcEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID--------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l~--------------~~~~~r~~~~~-----~g~L 63 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ .. +. ....+|+.+.. +++|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 83 (222)
T 1q9r_B 5 VESGGGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYL 83 (222)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred ecCCceeEcCCCEEEEEEEe-cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEE
Confidence 45778899999999999998 5544 6789999842 21 10 11235777653 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHW 133 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W 133 (977)
.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|
T Consensus 84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 163 (222)
T 1q9r_B 84 QMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 163 (222)
T ss_dssp EECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred EECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEE
Confidence 99999999999999999986541 122345777764 4555544433346789999999999885 888 9999
Q ss_pred EECCeeCCCCceE-------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 134 KRLGSAMPEDRMS-------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 134 ~k~~~~l~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
++++..+...... ......|.|.++..+| |.|+|.|.|..+.......|
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 164 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp GGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 9998776431111 1122468999999999 99999999998865444333
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-17 Score=165.84 Aligned_cols=173 Identities=16% Similarity=0.280 Sum_probs=126.1
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECC--eeC-----------------CCCceEEe---ccceEEEc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLG--SAM-----------------PEDRMSVL---PSRSLQLS 156 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~--~~l-----------------~~~~~~~~---~~~~L~I~ 156 (977)
|.+...| ...+.+|++++|.|.+.+. |.+.+.|+|.. ... ..+|+.+. .+.+|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 3455566 8889999999999999888 89999999942 100 11344433 24579999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEc
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLE 225 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~ 225 (977)
+++.+|+|.|+|.+.|..| .....+.|.|. .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+++
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~ 160 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN 160 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence 9999999999999998775 34456788888 5677777666666677899999999988 5666 8999999
Q ss_pred CeeeeecCCC-----ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 226 GNRSLIYPGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 226 g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|..+...... ..+.+.+. +.|.|.....+|.|.|+ |.|.|..+.....
T Consensus 161 g~~l~~~~~~~~~~~~~~~~~~~------s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~ 213 (218)
T 3s96_B 161 GTPITQGVDTSNPTKEGNKFMAS------SFLHLTSDQWRSHNSFT-CQVTHEGDTVEKS 213 (218)
T ss_dssp TEEC--------------CEEEE------EEEEEEHHHHHTCSCEE-EEEEETTEEEEEE
T ss_pred CEECcCceecCcccccCCcEEEE------EEEEEeHHHccCCCeEE-EEEEeCCCccccc
Confidence 9876421100 01222222 26889999999999999 9999998755443
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=173.15 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=128.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---ee------------cCCCceEEEec-----CcEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l~------------~~~~~r~~~~~-----~g~L 63 (977)
...+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+. .. +. .....|+.+.. +.+|
T Consensus 25 ~v~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 103 (291)
T 2gki_A 25 QLQQSGPELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYM 103 (291)
T ss_dssp EEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEE
T ss_pred EEEcCCcEEecCCCCEEEEEec-cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEE
Confidence 3456778999999999999998 5665 5789999952 11 10 11134665542 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecC-c--e-eeeEeEEEEEEc----------------CCeEEeCCCceEEeCCCeEEEEEEe
Q psy574 64 AIQDSRKTDDGRYQCVVKNVA-G--T-RESTDAVLRVLV----------------KPYIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~-g--~-~~s~~~~l~V~~----------------~P~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
.|.+++.+|+|.|+|.+.+.. | . .....+.|.|.. ++.+...|....+.+|++++|.|.+
T Consensus 104 ~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 183 (291)
T 2gki_A 104 ELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS 183 (291)
T ss_dssp EECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE
T ss_pred EECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc
Confidence 999999999999999999874 2 1 112345778776 3445666778889999999999999
Q ss_pred cccCce------EEEEEECC--eeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EE
Q psy574 124 GGDAVL------TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-IS 178 (977)
Q Consensus 124 ~g~p~~------~i~W~k~~--~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~ 178 (977)
.+.+.+ .+.|+|+. ..+. .+++... ...+|.|.+++.+|+|.|+|.|.|.... ..
T Consensus 184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg 263 (291)
T 2gki_A 184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFG 263 (291)
T ss_dssp SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEc
Confidence 888776 89999973 2110 2355443 2247999999999999999999986542 22
Q ss_pred EEEEEEEeeCCe
Q psy574 179 ASATLTVQMAPI 190 (977)
Q Consensus 179 ~~~~L~V~~~p~ 190 (977)
....|.|...+.
T Consensus 264 ~gt~l~v~~~~~ 275 (291)
T 2gki_A 264 SGTKLEIKHHHH 275 (291)
T ss_dssp CCEEEEEECC--
T ss_pred CCEEEEEEeeEc
Confidence 345666665444
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=151.91 Aligned_cols=121 Identities=28% Similarity=0.319 Sum_probs=107.3
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
+|+|+|..|.|+.|..+.++|.+++|+.+|.++++...+.++|.|+|++|.....+|.|.+|+|+|+..+..... ..+.
T Consensus 3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~-~~~~ 81 (124)
T 2ed9_A 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEM-ETLE 81 (124)
T ss_dssp SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCE-EEEC
T ss_pred eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcce-EEec
Confidence 478999999999999999999999999899999999999999999999996444899999999999986533332 2367
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
...++++|.+|+|++.|.|+|+|+|.+|.|++|+++.++|.+
T Consensus 82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~e 123 (124)
T 2ed9_A 82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123 (124)
T ss_dssp SSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCC
T ss_pred CCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence 788999999999999999999999999999999999998865
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=171.69 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=118.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCe-----EEEEeCCEEee------c---------CCCceEEE----ecCcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPT-----LVWKKNGHPID------F---------ENSKRLRL----VDGTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~-----v~W~k~g~~l~------~---------~~~~r~~~----~~~g~L~I 65 (977)
..|..+.+.+|++++|.|.+ .+.|.+. |.|+|++.... . ....++.. ..+.+|.|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 86 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRL 86 (248)
T ss_dssp STTSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEE
T ss_pred eCCCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEe
Confidence 35667899999999999998 6666654 99999632210 0 00111110 01235999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED 143 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~ 143 (977)
.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+.. .+..|+.+.|.|.+.| .|.+ .|.|+|++..+...
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~ 164 (248)
T 3pv7_A 87 PGIQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHP 164 (248)
T ss_dssp SSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSC
T ss_pred CCCCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCc
Confidence 999999999999999998765 446789999999988776653 4556788889999988 7888 99999999755422
Q ss_pred c----------eEE------eccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEE
Q psy574 144 R----------MSV------LPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTV 185 (977)
Q Consensus 144 ~----------~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V 185 (977)
. ... .....|.|.....+|.|.|+|.|.|..+. ....+.|.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 165 IEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp EEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0 111 11246888889999999999999998875 667777777
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=161.05 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCCCCCCCCeEEee-CCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece--ecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT--NVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~-~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~i~~L 472 (977)
.+|++|.++.+... ..+++.|+|.++.+ ++. ...|.|+|+..... |.. ....|..+.. ....+.+.+.+|
T Consensus 3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~-~~~-~~~Y~l~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~L 75 (215)
T 1cd9_B 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPE-THL-PTSFILKSFRSRAD---CQY--QGDTIPDCVAKKRQNNCSIPRKNL 75 (215)
T ss_dssp CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCGG---GCS--CCCEEEEEECCTTCCEEEEEGGGC
T ss_pred CCCCCCeeeeeecCCCcccEEEEecCCCC-CCC-ceeEEEEEEecCCc---ccc--cccccccCCCCCCCcEEEECCccc
Confidence 46899999998877 67899999999876 333 46799999864321 110 1123444332 223456677899
Q ss_pred CCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.+++.|.|+|.|.|..|.+... .+.+. ......|. | |.++.+
T Consensus 76 ~~~~~Y~~~V~A~N~~G~~~s~----~~~~~-~~~~v~p~---------p------------------------P~~~~~ 117 (215)
T 1cd9_B 76 LLYQYMAIWVQAENMLGSSESP----KLCLD-PMDVVKLE---------P------------------------PMLQAL 117 (215)
T ss_dssp CTTSCEEEEEEEEETTEEEECC----CEEEC-GGGGBCCC---------C------------------------CEEEEC
T ss_pred ccceEEEEEEEEECCCCCccCc----cEEEc-hHHceEeC---------C------------------------CcEEEE
Confidence 9999999999999998875322 22221 11101122 2 356777
Q ss_pred eEe------CCCeEEEEEEec-CCCc-cceEEEEEE-ecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 553 KPM------TSTSVKLTWEIL-NTDY-IEGVYIYSR-GLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 553 ~~~------~~tsv~lsW~~p-~~~~-i~~Y~v~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
... +.++|.|+|++| .++. +.+|.|+|+ ..+ ...|....... ...+.+.|.+|+|++.|.|+|+|.+..
T Consensus 118 ~~~~~~~~~~~~~~~l~W~~p~~~~~~~l~Y~v~y~~~~~-~~~w~~~~~~~-~~~~~~~l~~L~p~t~Y~~~Vra~~~~ 195 (215)
T 1cd9_B 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLK-GANWTLVFHLP-SSKDQFELCGLHQAPVYTLQMRCIRSS 195 (215)
T ss_dssp CC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESST-TCCCEEEEEEE-SCEEEEEECCCCSCSCEEEEEEEEESS
T ss_pred EEeccccCCCCCeEEEEEeCCCCCCeEEEEEEEEEccCCC-CCCcEEEeccc-CcceEEEEcCCCCCCEEEEEEEeeECC
Confidence 776 688999999999 3333 479999999 554 56787654333 456789999999999999999999987
Q ss_pred eeC---CCCCceEEeccCCC
Q psy574 624 VDG---KPSNLRAVRTLECE 640 (977)
Q Consensus 624 g~g---~~s~~~~~~T~~~~ 640 (977)
|.| .+|..+.++|.+++
T Consensus 196 g~G~wS~wS~~~~~~T~e~a 215 (215)
T 1cd9_B 196 LPGFWSPWSPGLQLRPTMKA 215 (215)
T ss_dssp SCCCCCCCCCCEEECCCC--
T ss_pred CCCCCcCCCCccceecCCCC
Confidence 765 56778899998753
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=160.34 Aligned_cols=190 Identities=13% Similarity=0.004 Sum_probs=138.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece--ecCcCeE--EEEc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT--NVPSPIL--TVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~--~i~~ 471 (977)
.+|++|.++.+...+..++.|+|.++.+ .+ ....|.|+|+..... .|..+.. ......+ .+.+
T Consensus 2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~-~~-~~~~Y~l~y~~~~~~-----------~~~~c~~~~~~~~~~c~~~~~~ 68 (210)
T 3n06_B 2 LPPGKPEIFKCRSPNKETFTCWWRPGTD-GG-LPTNYSLTYHREGET-----------LMHECPDYITGGPNSCHFGKQY 68 (210)
T ss_dssp CCCCCCEEEEEEBSSSSCEEEEEECCSS-SC-CCSEEEEEEEETTCC-----------CCEECSCSSTTCTTEEEECGGG
T ss_pred CCCCCCeEeEEEeCCCCeEEEEECCCCC-CC-CCceEEEEEEECCCC-----------ccccCCCCCCCCCeEEEeCCCC
Confidence 4689999999999999999999999886 33 357999999875432 5665531 1122334 4567
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|.+++.|.|+|+|.|..|.+.++. +.... .....| .++.++.
T Consensus 69 l~~~~~Y~~~V~A~N~~G~~~s~~----~~~~~-~~~v~p---------------------------------~pP~~l~ 110 (210)
T 3n06_B 69 TSMWRTYIMMVNATNQMGSSFSDE----LYVDV-TYIVQP---------------------------------DPPLELA 110 (210)
T ss_dssp CCSSSCEEEEEEEEETTEEEECCC----EEECG-GGCBCC---------------------------------CCCEEEE
T ss_pred cccceeEEEEEEEEcCCCCeeCCc----EEEch-hheEec---------------------------------CCCceEE
Confidence 999999999999999999874321 12211 110111 2236777
Q ss_pred eeEeC----CCeEEEEEEecC--C---C-ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 552 VKPMT----STSVKLTWEILN--T---D-YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 552 ~~~~~----~tsv~lsW~~p~--~---~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+...+ .+++.|+|++|. . + .+.+|.|+|+..+. ..|.... ....+++.|.+|+|++.|.|+|+|.+
T Consensus 111 ~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~-~~~~~~~---~~~~~~~~l~~L~p~t~Y~v~Vra~~ 186 (210)
T 3n06_B 111 VEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIHF---AGQQTEFKILSLHPGQKYLVQVRCKP 186 (210)
T ss_dssp EEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTC-SSCEEEE---EETCSEEEECCCCTTCEEEEEEEEEE
T ss_pred EEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCC-CCCEEEe---ccCceEEEEeccCCCCEEEEEEEEec
Confidence 77654 689999999992 1 2 36899999998774 5676532 24567999999999999999999999
Q ss_pred ccee-CCCCCceEEeccCCC
Q psy574 622 GSVD-GKPSNLRAVRTLECE 640 (977)
Q Consensus 622 ~~g~-g~~s~~~~~~T~~~~ 640 (977)
..|. |.+|..+.++|.++.
T Consensus 187 ~~g~wS~wS~~~~~~Tp~~~ 206 (210)
T 3n06_B 187 DHGYWSAWSPATFIQIPSDF 206 (210)
T ss_dssp SSSCCCCCCCCEEEECCTTC
T ss_pred CCCcccCCCCceeEECcCCC
Confidence 8886 889999999998764
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=174.97 Aligned_cols=171 Identities=17% Similarity=0.247 Sum_probs=121.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCC-CCCC-eEEEEeCC--EEe---e-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG-HPEP-TLVWKKNG--HPI---D-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g-~P~~-~v~W~k~g--~~l---~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+.. |..+.+.+|++++|.|.+ .+ .+.+ .|.|+|++ ..+ . .....|+.+.. +.+|.|.+++.
T Consensus 23 v~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 100 (234)
T 2j6e_L 23 LTQ-PPSASGTPGQRVTISCSG-SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRS 100 (234)
T ss_dssp CBC-CSCCCBCTTCEEEEEEEC-CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCS
T ss_pred EeC-CCcEEeeCCCcEEEEEEe-cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCH
Confidence 344 888999999999999998 44 3444 79999963 221 0 11235666553 34799999999
Q ss_pred CCCeEEEEEEEecCc--eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCC
Q psy574 71 TDDGRYQCVVKNVAG--TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPE 142 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g--~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~ 142 (977)
+|+|.|+|.+.|..+ ......+.|.|. .+|.+...+....+.+|++++|.|.+.|. |. +.|.|+|++..+..
T Consensus 101 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~ 180 (234)
T 2j6e_L 101 EDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKA 180 (234)
T ss_dssp TTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCS
T ss_pred HHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCC
Confidence 999999999999877 223334566773 34555544433334568999999999875 44 48999999998865
Q ss_pred CceEE----------eccceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 143 DRMSV----------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 143 ~~~~~----------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
+.... .....|.|.++..+|+|.|+|.|.|.....++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 181 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp SEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred CccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 42110 112468999999999999999999987654433
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=172.27 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=119.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--E---Eee-------cCCCceEEEec---CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~---~l~-------~~~~~r~~~~~---~g~L~I 65 (977)
..+...|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ . .+. .....|+.+.. +.+|.|
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred ceEEeeCCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 456677888999999999999998 5665 5899999853 2 121 11245776653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCe-----------------------EEeCCCceEEeCCCeEEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY-----------------------IIRGPKDTTVSASSIIVFECS 122 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~-----------------------~~~~p~~~~v~~G~~v~l~C~ 122 (977)
.+++.+|+|.|+|.+.|..+......+.|.|..++. .+..|....+.+|++++|.|.
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 174 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV 174 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence 999999999999999987543333445677764321 233455678999999999999
Q ss_pred ecccCc--eEEEEEECC--eeC--------------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 123 VGGDAV--LTVHWKRLG--SAM--------------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 123 v~g~p~--~~i~W~k~~--~~l--------------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+.+.+. +.+.|+|+. ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.+.+.
T Consensus 175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 987653 789999862 211 134555542 257999999999999999999875
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=175.22 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=112.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeC-CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKN-GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~-g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+++.|.++.|.+|++++|.|.. .. +.+ .+.|... ++......+. ....|.|.+++.+ |.|+|.+.. .|
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~-~c-~~p~~~~~~t~l~~~~~~~~g~-----~~~~~~l~~v~~~--~~y~C~~~~-~~ 71 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCST-SC-DQPKLLGIETPLPKKELLLPGN-----NRKVYELSNVQED--SQPMCYSNC-PD 71 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEE-CC-SSCSEEEEECSSCCCCCCCSCS-----SEEEEEEESCCSC--CCCEEEEEC-SS
T ss_pred eEEeCCccEEcCCCeEEEEEeC-CC-CCCccceEEecCCCcccccCCC-----ceEEEEEEecccC--CeEEEEEEc-CC
Confidence 5788999999999999999998 33 333 4888631 1111000000 0124788888853 469999964 44
Q ss_pred eeeeEeEEEEEEcCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce--EEEEEECCeeCCCCceEE-eccceEEEccCcc
Q psy574 86 TRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRL 160 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~--~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~ 160 (977)
......+.|.|+.+|... ..+....+.+|+.++|.|.+.| .|.. .|+|+|++..+....... ....+|.+.....
T Consensus 72 ~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~ 151 (291)
T 1mq8_A 72 GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD 151 (291)
T ss_dssp CEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSS
T ss_pred ccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeec
Confidence 556677789999887533 3344456889999999999965 4543 699999998775321000 0123566666667
Q ss_pred CCCeEEEEEEEeCCe--------eEEEEEEEEEeeCCeEEec-CCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCee
Q psy574 161 EDAGEYVCEAENAVG--------KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNR 228 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g--------~~~~~~~L~V~~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~ 228 (977)
+|.+.|+|+|.|..+ ..++...|.|+.+|..... .....+.+|+.++|.|.+.|++++ .+.|+++|..
T Consensus 152 D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~ 231 (291)
T 1mq8_A 152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (291)
T ss_dssp CSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------------------
T ss_pred cCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEe
Confidence 777799999998644 2456678999877533111 112368899999999999998665 5889999887
Q ss_pred eeecCCCccccEEEEEccCCceEEEEeec---cc--CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNV---SR--TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~s~L~I~~v---~~--~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.... ... ++ .+.+... .+ ++.+.|+ |.|.+..........|.|..
T Consensus 232 l~~~~-------~~~---g~--~~~~~~~~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 232 LNPTV-------TYG---ND--SFSAKASVSVTAEDEGTQRLT-CAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCcee-------eec---CC--eEEEEEecceeEcCCCCEEEE-EEEEeCCcceEEEEEEEEEc
Confidence 63210 000 11 3333332 23 3467777 88887555555666677765
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=158.27 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=117.8
Q ss_pred CCCceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCC----C---------------CceEEeccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMP----E---------------DRMSVLPSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~----~---------------~~~~~~~~~~L~I~~v~~~D~G 164 (977)
.|..+.+.+|++++|.|.+.+ .+.+.|.|+|++..+. . +|..+..+++|.|.+++.+|+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 466778999999999999965 5567999999875431 0 2445556788999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeeCCe---EEecCCCcEEeeCC-eEEEEEEEecC-CCCeEEEEEcCeeeeecCCCcccc
Q psy574 165 EYVCEAENAVGKISASATLTVQMAPI---VRERPSDLRLEVGR-DAVFLCGIEGS-PPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 165 ~Y~C~a~n~~g~~~~~~~L~V~~~p~---~~~~p~~~~v~~G~-~v~L~C~~~g~-p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|+|.+.+..+.....+.|.|..++. +...+ .....|. .++|.|.+.+. |.+.+.|+++|..+..
T Consensus 84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------- 153 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------- 153 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence 99999999988777788999986543 33322 2334565 89999999985 5789999999875420
Q ss_pred EEEEEccCCceEEEEeecccC-CCCeEEEEEEEcCCCceeEE
Q psy574 240 IQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.+ .|.|.....+ |.|.|+ |.|.|..|..+..
T Consensus 154 -------~~--~l~i~~~~~~~d~G~Y~-C~a~N~~g~~s~~ 185 (193)
T 2if7_A 154 -------QP--NLTVSWDPRISSEQDYT-CIAENAVSNLSFS 185 (193)
T ss_dssp -------SS--EEEEEECTTTCSCCEEE-EEEEETTEEEEEE
T ss_pred -------CC--eEEEEeccCcCCCCcEE-EEEECCCCccccc
Confidence 12 5777655554 899999 9999999987543
|
| >4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=173.94 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=109.7
Q ss_pred CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCce
Q psy574 568 NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQL 647 (977)
Q Consensus 568 ~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~ 647 (977)
.+..|++|.|+++.... ..+. +......+++.+.+|.|++.|.|+|+|+|..|.|++|....+.|.+..|+.+|..
T Consensus 18 ~~~~Vt~Y~~~~~~~~~-~~~~---~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~ 93 (232)
T 4go6_B 18 TNVMVTHYFLPPDDAVP-SDDD---LGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCA 93 (232)
T ss_dssp SEEEECEEECCCC----------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEE
T ss_pred CCEEEEEEEEEeeCCCC-CcEE---EEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCee
Confidence 34457788887755331 2222 2222456789999999999999999999999999999989988887777767765
Q ss_pred eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcce------------EEEEecCCcCe---------EEecCC
Q psy574 648 TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSAL------------INMTVSASTPT---------LLLTNL 706 (977)
Q Consensus 648 v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~------------~~~~~~~~~~~---------~~l~~L 706 (977)
+. ...+.++|.|+|.+| ...+|.|++|.|+|+..+.... ......+.... ..+.+|
T Consensus 94 ~~-~~~~~~sv~l~W~~P--~~~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 170 (232)
T 4go6_B 94 IK-ISKSPDGAHLTWEPP--SVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDY 170 (232)
T ss_dssp EE-EEEETTEEEEEEECC--SCCSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEE
T ss_pred eE-EecCCCEEEEEEeCC--CCCCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecC
Confidence 54 455788999999999 7778999999999987531110 00111111222 234579
Q ss_pred CCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 707 SAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 707 ~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.+++.|.|+|+|+|.+|.|++|+...+....
T Consensus 171 ~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~ 201 (232)
T 4go6_B 171 TTKPAIIFRIAARNEKGYGPATQVRWLQETS 201 (232)
T ss_dssp SSSEEEEEEEEEECSSCBCCCEEEEEECC--
T ss_pred ccCCceEEEEEEECCCcCCCCcccEEeccCC
Confidence 9999999999999999999999866665544
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=166.60 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=122.0
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceE-----EEEEECCeeCCC----------------CceEEe------ccceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLT-----VHWKRLGSAMPE----------------DRMSVL------PSRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~-----i~W~k~~~~l~~----------------~~~~~~------~~~~L~I~ 156 (977)
..|..+.+.+|++++|.|.+.|.|.+. |.|+|++..... .+..+. .+.+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 345667899999999999998887765 999997543221 011110 23459999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecC-
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYP- 233 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~- 233 (977)
+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.. .+..|..++|.|.+.+ .|.+ .+.|+++|..+....
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 99999999999999999888888999999999998877663 4556778889999998 7888 999999996432100
Q ss_pred -CCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCcee--EEEEEEE
Q psy574 234 -GDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDL--ARASLTV 285 (977)
Q Consensus 234 -~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~~l~V 285 (977)
.............++. +.|.|.....+|.|.|+ |.|.|..+... ..+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Yt-C~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQ-CVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEE-EEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEE-EEEECCCCCCCcEEEEEEEE
Confidence 0000001111111221 37888999999999999 99999988744 4455555
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=166.22 Aligned_cols=174 Identities=22% Similarity=0.353 Sum_probs=128.1
Q ss_pred CceEEeCCCeEEEEEEecccCc-----eEEEEEECCeeC--------------CCCceEEec------cceEEEccCccC
Q psy574 107 KDTTVSASSIIVFECSVGGDAV-----LTVHWKRLGSAM--------------PEDRMSVLP------SRSLQLSDVRLE 161 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~-----~~i~W~k~~~~l--------------~~~~~~~~~------~~~L~I~~v~~~ 161 (977)
..+.+.+|++++|.|.+.+.|. +.+.|++++... ..++..+.. +.+|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 3456889999999999987654 789999987543 234444433 578999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
|+|.|+|.+.+. +..+..+.|.|..+ |.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++++.... ...
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~----~~~ 156 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL----TGN 156 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC----CSE
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccC----CCC
Confidence 999999999986 34456667777754 5555444 4477899999999999 889999999999443321 111
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........++. +.|.|.++..+|.|.|+ |.|.|..|.....+.|.|.+
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~ 206 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYS-CLVRNPVLQQDAHGSVTITG 206 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEE-EEEEETTTTEEEEEEEECCC
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEE-EEEECCCCCCceEEEEEEeC
Confidence 222233332333 45899999999999999 99999999999999999987
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=147.74 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=99.6
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEE-EecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--ceEEEEecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPV-LLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--ALINMTVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~-~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~ 700 (977)
|.|++|..+.++|.+++|+.+|.++++. ..++++|.|+|++|+....||.|++|+|+|+..+.. ......+..+.++
T Consensus 1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 2dbj_A 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSR 80 (124)
T ss_dssp CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEEEESTTSC
T ss_pred CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEEeCCCcce
Confidence 5688999999999999999999999998 577899999999998778999999999999753311 2222234567889
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|.|++.|.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 81 ~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~~~~ 119 (124)
T 2dbj_A 81 ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHS 119 (124)
T ss_dssp EEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECCCSC
T ss_pred EEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCC
Confidence 999999999999999999999999999999999998765
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=164.76 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=127.6
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+...| ...+.+|++++|.|.+. +.+.+.|+|+ +..+ ..+++... .+.+|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 80 (211)
T 3tv3_L 4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE 80 (211)
T ss_dssp CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence 44455 78899999999999998 8889999994 2221 22455433 345799999999999
Q ss_pred eEEEEEEEeCCe--eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC--CCCeEEEEEcCeeeeecC--
Q psy574 164 GEYVCEAENAVG--KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYP-- 233 (977)
Q Consensus 164 G~Y~C~a~n~~g--~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~--p~~~i~W~~~g~~~~~~~-- 233 (977)
|.|+|.+.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. +.+.+.|+++|..+....
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 160 (211)
T 3tv3_L 81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET 160 (211)
T ss_dssp EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc
Confidence 999999999887 35566788888 67888887776666689999999999885 357899999998763200
Q ss_pred ----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 234 ----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 234 ----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
....+.+... +.|.|..+..+|.|.|+ |.|.|..+....++
T Consensus 161 ~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Y~-C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 161 TTPSKQSNNKYAAS------SYLSLTPEQWKSHRSYS-CQVTHEGSTVEKTV 205 (211)
T ss_dssp CCCEECTTSSEEEE------EEEEECHHHHHHSSCEE-EEEEETTEEEEEEE
T ss_pred CCceECCCCCEEEE------EEEEEcHHHhCCCCeEE-EEEEECCCCEEeec
Confidence 0011222222 37999999999999999 99999886554443
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=152.00 Aligned_cols=244 Identities=16% Similarity=0.316 Sum_probs=171.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+.+.|....+..|+.++|+|.+..|.| ...|+|+|||..+.. ..+.|.|..++..|+|.|+|++.+.
T Consensus 4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTDa 74 (304)
T 3shs_A 4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDT 74 (304)
T ss_dssp EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEEC
Confidence 4567899999999999999999867777 558999999998831 2457999999999999999999998
Q ss_pred CceeeeEeEEEEEEcC--CeE-EeCCCceEEeCCCeEEEEEEe--c-ccC-----ceEEEEEECCeeCCCCceEEeccce
Q psy574 84 AGTRESTDAVLRVLVK--PYI-IRGPKDTTVSASSIIVFECSV--G-GDA-----VLTVHWKRLGSAMPEDRMSVLPSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~--P~~-~~~p~~~~v~~G~~v~l~C~v--~-g~p-----~~~i~W~k~~~~l~~~~~~~~~~~~ 152 (977)
.|...... .+.|..+ +.+ ...|....+..|..+.|.+.+ . |.| ..+++|+|++..+.. ...
T Consensus 75 ~Gcs~tSs-~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-------Aq~ 146 (304)
T 3shs_A 75 DTMTSVES-EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------TQD 146 (304)
T ss_dssp TTCCEEEC-CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-------SSE
T ss_pred CCCeeeee-eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-------ccc
Confidence 87654322 3333332 233 234666677788999999988 4 344 469999999987643 346
Q ss_pred EEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe--------cCCCCe--E
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE--------GSPPPS--T 220 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~--------g~p~~~--i 220 (977)
|++...+..++|.|+|.+.|..+. .++.+.+.+...+.-........+..|+.+.|...+. |.|... +
T Consensus 147 lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (304)
T 3shs_A 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226 (304)
T ss_dssp EEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEE
T ss_pred cceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEE
Confidence 788889999999999999998763 5666677666544444445566888999999987662 223323 4
Q ss_pred EEEEcC--ee--eeecC--CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 221 FWMLEG--NR--SLIYP--GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 221 ~W~~~g--~~--~~~~~--~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
.|+... .. .++.. +..-.-|.+.. +| .|.-.....+|...|. |+|.-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~ 279 (304)
T 3shs_A 227 NWYLQREGQLSPTLIGSEVGEALEGFSITP--DG--HLFKESATYDDTAKFW-CVAKL 279 (304)
T ss_dssp EEEEECTTCCSCEEEESSSEECGGGEEECT--TS--CEEESSCCGGGCEEEE-EEEEE
T ss_pred EEEEeecCccCchhhhhhhhhhhccceeCC--Cc--ceeecccccccchhee-eHHHH
Confidence 587543 21 11111 11122333333 46 6777778889999999 98753
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=166.22 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=118.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee--------------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID--------------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~--------------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ....+|+.+..+ .+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 83 (210)
T 3d9a_H 5 QESGPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLN 83 (210)
T ss_dssp EEESCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEEC
Confidence 45778899999999999998 5554 488999985 32211 012457776532 389999
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeC
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAM 140 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l 140 (977)
+++.+|+|.|+|.+.|.. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++..+
T Consensus 84 ~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~ 161 (210)
T 3d9a_H 84 SVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 161 (210)
T ss_dssp SCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence 999999999999998753 112335677763 4665554434457889999999999876 888 99999998764
Q ss_pred CC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 141 PE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 141 ~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
.. ... .......|.|.++..+| |.|+|.|.|..+...
T Consensus 162 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp TEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred ceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 21 111 11123569999998877 999999999987643
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-18 Score=178.26 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=102.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEe---e-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI---D-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l---~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+ . .....|+.+.. +.+|.|.+++.
T Consensus 24 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 24 TTVTQSPASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCEEEECSBC-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred eeEEEcCCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 345556888999999999999998 67777889999853 211 0 11123444332 23799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC-c
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED-R 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~-~ 144 (977)
+|+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|++++|.|.+.|. |.+ .|.|+|++..+..+ .
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999987654333344567764 5766664444444579999999999874 443 79999999887654 1
Q ss_pred eEE----------eccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MSV----------LPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~~----------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
... .....|.|..+..+|+|.|+|.|.|...
T Consensus 183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 111 0123688999999999999999999753
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=166.20 Aligned_cols=144 Identities=15% Similarity=0.296 Sum_probs=109.9
Q ss_pred EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc-CccCCCeEEEEEEEeCCeeEEEEEEEEEee-
Q psy574 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD-VRLEDAGEYVCEAENAVGKISASATLTVQM- 187 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~- 187 (977)
...+|+++.|.|.+.+ +. .|.|+|++..+... .+++|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~ 82 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSA 82 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecc
Confidence 4578999999999987 43 49999999988754 456899999 999999999999999988755555555542
Q ss_pred -CCeEE------------------ecCC--C---cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 188 -APIVR------------------ERPS--D---LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 188 -~p~~~------------------~~p~--~---~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
++... ..+. . ..+.+|+.++|.|.+ |.+.|.|+|+|..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~---------- 149 (186)
T 1jbj_A 83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN---------- 149 (186)
T ss_dssp CCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS----------
T ss_pred cccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC----------
Confidence 22100 0000 1 123499999999988 789999999998864211
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.....|.|.++..+|+|.|+ |.|.|..|..
T Consensus 150 ---~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~ 179 (186)
T 1jbj_A 150 ---ATKNTWNLGNNAKDPRGTYQ-CQGAKETSNP 179 (186)
T ss_dssp ---CCSSCCEEEETTSCCEEEEE-EEESSCEEEE
T ss_pred ---CCcceEEECCCCcCcCEEEE-EEEEcCcCCc
Confidence 02238999999999999999 9999998865
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=170.07 Aligned_cols=167 Identities=17% Similarity=0.274 Sum_probs=112.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-cC-----------CC-ceEEEe----cCcE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-FE-----------NS-KRLRLV----DGTN 62 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-~~-----------~~-~r~~~~----~~g~ 62 (977)
.+.+.+.|.++.+.+|++|+|.|.+ .+.|.+.|.|+|. +. .+. .. .. .++... .+.+
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR 80 (259)
T ss_dssp ---------CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred ccccccCCceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence 4678888999999999999999999 7778889999982 11 110 00 01 122111 2346
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc-----------------CCeEEeCCCceEEeCCCeEEEEEEe
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV-----------------KPYIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~-----------------~P~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
|.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. .|.+...|....+.+|++++|.|.+
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 999999999999999999987652 234456788876 3567778888999999999999998
Q ss_pred ccc-CceEEEEEECCe--eC-------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEe
Q psy574 124 GGD-AVLTVHWKRLGS--AM-------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 124 ~g~-p~~~i~W~k~~~--~l-------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+. +.+.+.|+|++. .+ ..+++.+.. ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 764 788999999542 11 023444432 24699999999999999999985
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=162.39 Aligned_cols=167 Identities=16% Similarity=0.270 Sum_probs=120.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee------------cCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~------------~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. . .+. ....+|+.+..+ .+|.|
T Consensus 5 ~q~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (220)
T 2fbj_H 5 LESGGGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM 83 (220)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred ecCCCeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEE
Confidence 45677999999999999998 5554 5789999842 2 121 112467777643 37999
Q ss_pred cCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~ 136 (977)
.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+ ...+.+|+.++|.|.+.|. |. +.|.|+++
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~ 162 (220)
T 2fbj_H 84 SKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKS 162 (220)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCC
T ss_pred CCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecC
Confidence 999999999999999987543 123346788874 45555444 3446789999999999776 76 79999999
Q ss_pred CeeCCC--CceEEec------cceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 137 GSAMPE--DRMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 137 ~~~l~~--~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
+..+.. ....... ...|.|.....+|.|.|+|.|.|..+...
T Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 163 GKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 876521 1111111 23589999999999999999999987643
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=208.63 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=171.6
Q ss_pred ceEEEeccCCCCCeEEEEEE-EcCCCc----eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 344 GSLVLTDVTKEDSGEYTCVV-KSPHGS----ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 344 ~sl~I~~v~~~d~G~Y~C~a-~n~~G~----~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
.++.|.++.+...|.|+..| .|..|. +..+..+.+.. ....|++|.++.+...+.+++.|+|
T Consensus 549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T-------------~~~~Ps~P~~l~~~~~s~tsI~LsW 615 (897)
T 2dtg_E 549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT-------------DATNPSVPLDPISVSNSSSQIILKW 615 (897)
T ss_dssp CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBC-------------CCCCCCCCEEEEEEECSSSCEEEEE
T ss_pred cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEEC-------------CCCCCcCCcceEEEeCCCCEEEEEE
Confidence 56889999999999999999 888886 23333232222 1256889999999999999999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCC-----CCCCCC--------------------------------------------
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPS-----SSPSGD-------------------------------------------- 449 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~-----~~~~~~-------------------------------------------- 449 (977)
.+|.. .++.+.+|.|+|+...... ..|...
T Consensus 616 ~pP~~-~nG~I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~ 694 (897)
T 2dtg_E 616 KPPSD-PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 694 (897)
T ss_dssp ECCCC-SSSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC---------------------------------------
T ss_pred eCCCC-CCCCeeEEEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhh
Confidence 99966 5667999999987643310 000000
Q ss_pred -----CCcccEEEe--------------------------------ceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCC
Q psy574 450 -----TATATWVRV--------------------------------ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA 492 (977)
Q Consensus 450 -----~~~~~w~~~--------------------------------~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 492 (977)
.....|... .......++++.+|.|++.|.|+|+|.|..|.+.
T Consensus 695 ~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~ 774 (897)
T 2dtg_E 695 ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEE 774 (897)
T ss_dssp -----------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSC
T ss_pred hhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCC
Confidence 000122210 0011347899999999999999999999999877
Q ss_pred CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCC
Q psy574 493 PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTD 570 (977)
Q Consensus 493 ~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~ 570 (977)
+...+..+.........+ +.+|.++++...+.++|.|+|++| .++
T Consensus 775 ~~s~s~~v~~~T~~~~~~---------------------------------p~~P~~l~~~~~~~~sv~LsW~~P~~~nG 821 (897)
T 2dtg_E 775 RCSVAAYVSARTMPEAKA---------------------------------DDIVGPVTHEIFENNVVHLMWQEPKEPNG 821 (897)
T ss_dssp CBCCCCCEEEECCCCCCC---------------------------------CCCCCCCCCCSSSSSCCCCCCCCCCSCSS
T ss_pred CCCCCceeEEeccCccCC---------------------------------CCCCcceEEEeCCCCEEEEEECCCCCCCC
Confidence 522233333311111111 122245677888999999999999 677
Q ss_pred ccceEEEEEEecCCCCCceEEEE--eecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCC
Q psy574 571 YIEGVYIYSRGLDPPASVAMLTV--LHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641 (977)
Q Consensus 571 ~i~~Y~v~y~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P 641 (977)
.|.+|.|+|+..+. .+....+ ......+.++|.+|.|+ .|.|+|+|.|..|.|++|..+.++|.+.++
T Consensus 822 ~I~~Y~V~y~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p~ 891 (897)
T 2dtg_E 822 LIVLYEVSYRRYGD--EELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891 (897)
T ss_dssp CEEEECCCCBSSSB--CCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCCCCC-
T ss_pred CEEEEEEEEEECCC--cceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCCC
Confidence 89999999998774 2211111 11246678999999999 699999999999999999999999987543
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=163.09 Aligned_cols=181 Identities=18% Similarity=0.270 Sum_probs=134.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a 80 (977)
..|.| ..|.++.+.+|+.++|.|.+ .|.|.+.|.|+|||..+......++.+.. ++.|.|.+++.+|+|.|+|.|
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 35666 57778999999999999999 88999999999999999665556666653 467999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe----cccCce--EEEEEECCeeCCCCce-EEe---cc
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV----GGDAVL--TVHWKRLGSAMPEDRM-SVL---PS 150 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v----~g~p~~--~i~W~k~~~~l~~~~~-~~~---~~ 150 (977)
.|..|.. +..+.|.|..+|.....+. ....+..+.|.|.. .+.|.. .+.|++++...-.... ... .+
T Consensus 96 ~n~~g~~-~~~~~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~ 172 (215)
T 3mtr_A 96 VNRIGQE-SLEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 172 (215)
T ss_dssp ECSSCEE-EEEEEEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred EECCCce-EEEEEEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence 9999875 4567888877665332221 12457789999974 233444 4788888754221110 111 12
Q ss_pred ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
..|.|.++...|.|.|+|.|.|..|....+..+.|..+|
T Consensus 173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp TEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred ccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 789999999999999999999999976666666665444
|
| >1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=166.58 Aligned_cols=188 Identities=11% Similarity=0.132 Sum_probs=132.4
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec-CCCcc--ceEEEEEEecCCC---CCceEEEEee--cCccceEEECCCCCCcEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL-NTDYI--EGVYIYSRGLDPP---ASVAMLTVLH--AGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i--~~Y~v~y~~~~~~---~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~ 615 (977)
+..|+++.+...+.++++++|+++ .++.. ..|.|.|+..+.. ..+..+.... ......+...+|.+++.|.|
T Consensus 30 P~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~Y~~ 109 (236)
T 1axi_B 30 SGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCI 109 (236)
T ss_dssp --CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSEEEE
T ss_pred CCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccceEEE
Confidence 445678989988999999999987 32322 5899999876532 2233322111 12334566678999999999
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEE--EecC----cEEEEEeeCCCCC-CCCe-eeeEEEEEEEecCCc
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV--LLNA----TSVLLKWKPPPVG-THNG-VIRTYQIIVGGGNNS 687 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~--~~~~----~sv~v~W~~p~~~-~~ng-~i~~Y~v~~~~~~~~ 687 (977)
+|.| | .+ .+....+.....+.+.||.++.+. ..+. ..+.|+|++|... ..+| .++.|+|+|+..+..
T Consensus 110 ~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~~~ 184 (236)
T 1axi_B 110 KLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET 184 (236)
T ss_dssp EEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS
T ss_pred EEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECCCC
Confidence 9999 7 33 334456666666666799999644 3222 3599999999533 4477 789999999987643
Q ss_pred ceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC--cCCCCCceEEeecC
Q psy574 688 ALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG--TGPYSRPALLSLTS 737 (977)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G--~g~~S~~~~~~t~~ 737 (977)
.+.... ....+++.|.+|+||+.|.|+|||.+.+| .|.||+++.|+|+.
T Consensus 185 ~w~~~~-~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p~ 235 (236)
T 1axi_B 185 KWKMMD-PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ 235 (236)
T ss_dssp SCEECC-CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred ceEEEe-ccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECCC
Confidence 333222 23568999999999999999999999999 89999999998764
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=164.44 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=125.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee----------------CCCCceEEec----cceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA----------------MPEDRMSVLP----SRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~----------------l~~~~~~~~~----~~~L~I~~v~ 159 (977)
+...|..+.+.+|++++|.|. .+.|.+.|.|+|+. .. ...+++.+.. ..+|.|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455677889999999999999 67888999999962 11 1134555542 3579999999
Q ss_pred cCCCeEEEEEEEeCCee-----EEEEEEEEEeeCC------------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEE
Q psy574 160 LEDAGEYVCEAENAVGK-----ISASATLTVQMAP------------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~p------------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W 222 (977)
.+|+|.|+|.|.|..+. ....+.|.|...+ .+...|....+.+|++++|.|.+.+.|.+.+.|
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W 161 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW 161 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence 99999999999987542 1234577887543 556667888899999999999999999999999
Q ss_pred EEcCe----eeeec-C----CCccccEEEEE-ccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 223 MLEGN----RSLIY-P----GDRVDNIQAEI-TSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 223 ~~~g~----~~~~~-~----~~~~~~~~~~~-~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+|++. ..... . .....++.+.. ...+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~n~~ 222 (238)
T 2p1y_A 162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF-CAAIDTN 222 (238)
T ss_dssp EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEE-EEEEETT
T ss_pred EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEE-EEEeeCC
Confidence 99742 11110 0 01245666653 2234469999999999999999 9999974
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=146.03 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=96.9
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|++|..+.++|.+++|+.+|.++++.. +.++|.|+|++|+....||.|++|+|+|+..+.... ..+..+.+.+.+
T Consensus 1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~--~~~~~~~~~~~~ 77 (117)
T 1wj3_A 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV--QVLNTNKTSAEL 77 (117)
T ss_dssp CCCCCCCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC--EEEEESSSEEEE
T ss_pred CcCCCCCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC--eEEeCCCcEEEE
Confidence 56889999999999999999999999877 888999999999877899999999999998653222 233345678888
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
. |.+++.|.|+|+|+|.+|.|++|+++.++|.+..
T Consensus 78 ~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~~~v 112 (117)
T 1wj3_A 78 V-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS 112 (117)
T ss_dssp E-CCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCC
T ss_pred E-CCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCC
Confidence 8 9999999999999999999999999999998755
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=160.58 Aligned_cols=172 Identities=16% Similarity=0.238 Sum_probs=128.4
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~~ 161 (977)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.+. .. ..+++.+. .+.+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 445666788899999999999999988899999998421 11 12455544 3348999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEE---eeCCeEEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeec---
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIY--- 232 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V---~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~--- 232 (977)
|+|.|+|.|.|..+. ....+.|.| ..+|.+...+....+..|+.++|.|.+.+.++ +.+.|+++|..+...
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 999999999987543 345567887 57788887777777778999999999988654 389999999876421
Q ss_pred ----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 233 ----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 233 ----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.....+.+.+. +.|.|.....+|.|.|+ |.|.|......
T Consensus 162 ~~~~~~~~~g~~~~~------s~l~i~~~~~~d~g~Yt-C~v~n~~~~~~ 204 (213)
T 3r06_A 162 SVTDQDSKDSTYSLS------STLSLTKADYERHNLYT-CEVTHKTSTAA 204 (213)
T ss_dssp EECCCCTTTCCEEEE------EEEEEEHHHHHTCCEEE-EEEEETTCSSC
T ss_pred ccCceeCCCCcEEEE------EEEEeCHHHhccCCeEE-EEEEecccCcc
Confidence 00112223222 37889999999999999 99999875543
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=164.28 Aligned_cols=179 Identities=18% Similarity=0.302 Sum_probs=129.9
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--e------------------CCCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--A------------------MPEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~------------------l~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.|.| .+.|.|+|+.. . ...+|+.+.. ..+|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 3457899999999999998876 67899999531 1 1124665543 247999999
Q ss_pred ccCCCeEEEEEEEeCCee--EEEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE
Q psy574 159 RLEDAGEYVCEAENAVGK--ISASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~ 221 (977)
+.+|+|.|+|.|.|..+. ....+.|.|..+ +.+...+....+.+|++++|.|.+.+.+.+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 999999999999998432 334567888753 345556777789999999999999999989999
Q ss_pred EEE--cCeeee--ec-----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEE
Q psy574 222 WML--EGNRSL--IY-----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVS 286 (977)
Q Consensus 222 W~~--~g~~~~--~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~ 286 (977)
|+| ++..+. .. ......++..... ....+|.|.+++.+|+|.|+ |.|.|...... ..+.|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGS-GTDFTLTISRLEPEDFAVYY-CQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECS-SSEEEEEECSCCGGGCEEEE-EEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecC-CCeEEEEECcCCHHHCEEEE-EEEccCCCceEcCCEEEEEC
Confidence 999 454321 10 0112456665432 34468999999999999999 99998654332 33466665
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=160.07 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=120.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.+ .+.|.|+|+. . .+. ....+|+.+.. +.+|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (223)
T 1dee_B 5 VESGGGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQM 83 (223)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred EcCCCEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEE
Confidence 45678999999999999998 5544 4789999843 2 120 11246777653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCc----e-eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----T-RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWK 134 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----~-~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~ 134 (977)
.+++.+|+|.|.|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 163 (223)
T 1dee_B 84 NSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWK 163 (223)
T ss_dssp CSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred CCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeE
Confidence 99999999999999998653 1 122345788873 4555432222345789999999999876 776 99999
Q ss_pred E-CCeeCCCC--------ceEEeccceEEEccCcc--CCCeEEEEEEEeCCeeEEEE
Q psy574 135 R-LGSAMPED--------RMSVLPSRSLQLSDVRL--EDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 135 k-~~~~l~~~--------~~~~~~~~~L~I~~v~~--~D~G~Y~C~a~n~~g~~~~~ 180 (977)
+ ++..+... .........|.|..... +|.|.|+|.|.|..+.....
T Consensus 164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 9 88877540 00111234688887776 88999999999998765443
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=166.83 Aligned_cols=169 Identities=14% Similarity=0.223 Sum_probs=123.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe----------------CCEEeec-CCCceEEEec----CcEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK----------------NGHPIDF-ENSKRLRLVD----GTNLAI 65 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k----------------~g~~l~~-~~~~r~~~~~----~g~L~I 65 (977)
.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+| ++..+.. ....|+.+.. +.+|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence 46778888999999999999998 677899999999 3333321 1225777653 237999
Q ss_pred cCCCCCCCeEEEEEEEecCc---eeeeEeEEEEEEc------CCeEE-eCCCceEEeCCCeEEEEEEecccCce--EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYII-RGPKDTTVSASSIIVFECSVGGDAVL--TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g---~~~s~~~~l~V~~------~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W 133 (977)
.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+. ..|....+.+|+.++|.|.+.|.+++ .+.|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999987543 1223445777774 45543 45555567779999999999886544 8999
Q ss_pred EECCeeCCCCceEEe---------cc------ceEEEccCccCC-CeEEEEEEEeCCee
Q psy574 134 KRLGSAMPEDRMSVL---------PS------RSLQLSDVRLED-AGEYVCEAENAVGK 176 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~---------~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g~ 176 (977)
+|++..+........ .+ ..|.|.....+| .|.|+|.|.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 999988865322110 12 348888888888 99999999997543
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-17 Score=169.24 Aligned_cols=216 Identities=13% Similarity=0.140 Sum_probs=127.8
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-----EeccceEEEccCccCCCeEEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ...+..|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 35677777775 67899999999999974 46789999998765321100 1135689999999999999999998
Q ss_pred eCCe-----eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAVG-----KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~g-----~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
+... ..+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+..... +. ..
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~----~~-~~ 155 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFS----AG-PK 155 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCB----CB-CC
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccc----cc-cc
Confidence 6431 235667788874 456666665 4688999999999998764 68999999976642110 00 00
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCC-----ceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEE
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQV 317 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-----~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~ 317 (977)
........|.|.+++ |+|.|+ |.|.+... ..+....|.|.+ +|.+.. .|.......|..+.|.|.+
T Consensus 156 ~~~~~~~~l~I~~v~--D~G~Y~-C~a~~~~~p~~~s~~S~pl~L~V~g-----~p~~~~p~~~~~~~~~g~~~~l~~~~ 227 (257)
T 1b6u_A 156 VNGTFQADFPLGPAT--HGGTYR-CFGSFRDSPYEWSNSSDPLLVSVTG-----NPSNSWPSPTEPSSETGNPRHLHAAA 227 (257)
T ss_dssp SSSCCBEEEEEEECC--SCEEEE-EEEECSSCTTBBCCCCCCEEECCBC-----CC------------------------
T ss_pred cCCceeEEEEecccc--cCEEEE-EEEEcCCCCcccccCCCCEEEEEec-----cCCCCCCCCcccCccCCCeEEEEEEE
Confidence 000013489999998 999999 99997643 224456777777 333332 2223345678889999887
Q ss_pred cc-CceEEEEECC
Q psy574 318 RG-EGSVQWWRGE 329 (977)
Q Consensus 318 ~~-~p~i~W~~~g 329 (977)
-. ...|.|...+
T Consensus 228 ~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 228 EQKLISEEDLNLD 240 (257)
T ss_dssp -------------
T ss_pred cchHHHHHHhhhh
Confidence 77 6678886543
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=164.44 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=135.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ..+|+.+.. ..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 346677899999999999998775 6799999952 211 124665543 2489999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-----eEEEEE--
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-----STFWML-- 224 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-----~i~W~~-- 224 (977)
+++.+|+|.|+|.+.|..| .....+.|.|..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~ 164 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK 164 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence 9999999999999999855 2334578889888888888888899999999999999998875 999999
Q ss_pred cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEEC
Q psy574 225 EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSG 287 (977)
Q Consensus 225 ~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~ 287 (977)
++..+. ... .....++..... .....|.|.+++.+|+|.|+ |.|.|..... ...+.|.|..
T Consensus 165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 165 PGQSPKLLIYKVSNRFSGVPDRFSGSGS-GTDFTLKISRVEAEDLGVYY-CFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp TTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEECC
T ss_pred CCCCcEEEEEEeCCCCCccCCcEEEEcc-CCEEEEEECCCChHHCEEEE-EEEccCCceEECCCEEEEEEC
Confidence 554331 110 112356665432 34468999999999999999 9999864432 2335677764
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=159.25 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=120.4
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----E-EeccceEEEccCccCCCeEEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----S-VLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~-~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+..... . ...++.|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 45677777775 67899999999999974 6789999999886642111 0 0135789999999999999999998
Q ss_pred eCCe-----eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAVG-----KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~g-----~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|... ..+..+.|.|.. +|.+...|. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+... ......
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----~~~~~~ 156 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-----LPAGPK 156 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-----EECEEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcc-----cccccc
Confidence 7531 234567788874 466766665 57899999999999986 56789999999765321 111111
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
........|.|.+++ |+|.|+ |.|.+..
T Consensus 157 ~~~~~~~~L~i~~v~--d~G~Y~-C~a~~~~ 184 (201)
T 1nkr_A 157 VNGTFQADFPLGPAT--HGGTYR-CFGSFHD 184 (201)
T ss_dssp ETTEEEEEEEEEECC--SCEEEE-EEEEETT
T ss_pred cCCceEEEEEeCCcC--CCeeEE-EEEEcCC
Confidence 110013489999998 999999 9998753
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=164.60 Aligned_cols=172 Identities=14% Similarity=0.260 Sum_probs=125.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCee---------------CCCCceEEec---cceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVLP---SRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------------l~~~~~~~~~---~~~L~I~~v~~~ 161 (977)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+... ...+++.... +.+|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 3456667788899999999999999999999999996310 0124444332 237999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEEeeC-------------------CeEEecCCCcEEeeCCeEEEEEEEecCC--CCe
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTVQMA-------------------PIVRERPSDLRLEVGRDAVFLCGIEGSP--PPS 219 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V~~~-------------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~ 219 (977)
|+|.|+|.+.|..+. ......|.|..+ +.+...+....+.+|++++|.|.+.+.+ .+.
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 164 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW 164 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence 999999999987654 334456777653 3344556777899999999999998877 789
Q ss_pred EEEEEc--Ceeeeec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 220 TFWMLE--GNRSLIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 220 i~W~~~--g~~~~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
+.|+|+ +..+... ......|+.+.... ....+|.|.+++.+|+|.|. |.|.+
T Consensus 165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~ 231 (250)
T 3esu_F 165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYF-CARSG 231 (250)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEEC
T ss_pred EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEE-EEEec
Confidence 999998 4332111 11123677776542 34468999999999999999 99997
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-16 Score=160.04 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=122.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~ 160 (977)
+.. |....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ..+|+.... ..+|.|.+++.
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT 82 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence 445 7788999999999999998877 4789999963 221 124555432 24899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecC
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYP 233 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~ 233 (977)
+|+|.|+|.+.|..+. ....+.|.|. .+|.+...+....+..|+.++|.|.+.+.+++ .+.|+++|..+...
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~- 161 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG- 161 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT-
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC-
Confidence 9999999999998764 2344567774 56777766655555679999999999885443 89999999876321
Q ss_pred CCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 234 GDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..........+|. +.|.|..+..+|.|.|+ |.|.|.....
T Consensus 162 ---~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~-C~a~n~~~~~ 205 (212)
T 1q0x_L 162 ---METTQPSKQSNNKYMASSYLTLTARAWERHSSYS-CQVTHEGHSS 205 (212)
T ss_dssp ---EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEE-EEEEETTEEE
T ss_pred ---eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEE-EEEEeCCcce
Confidence 0000011111221 37999999999999999 9999987653
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=160.91 Aligned_cols=171 Identities=16% Similarity=0.248 Sum_probs=120.8
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ ..+|+.+.. +.+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN 84 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence 345677899999999999998765 6899999973 322 124555542 3589999
Q ss_pred cCccCCCeEEEEEEEeCCe----eEEEEEEEEEeeC----CeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 157 DVRLEDAGEYVCEAENAVG----KISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~~----p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
+++.+|+|.|+|.+.|..+ .....+.|.|... |.+...+....+.+|+.++|.|.+.+ .|.| .|.|++++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999999762 2234567888753 66655444445678999999999998 8988 99999998
Q ss_pred eeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 227 NRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 227 ~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
..+...... ..+.+... +.|.|.... .|.|.|+ |.|.|..+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~-~d~g~Y~-C~a~n~~~~~~~~~~ 215 (219)
T 1c1e_H 165 LSSGVHTFPAVLQSDLYTLS------SSVTVPSSP-RPSETVT-CNVAHPASSTKVDKK 215 (219)
T ss_dssp BCTTEEECCCEESSSCEEEE------EEEEEESSS-TTTSCCE-EEEEEGGGTEEEEEE
T ss_pred cccceEecCCcccCCeEEEE------EEEEEeccc-CCCCEEE-EEEEeCCCCccEEEe
Confidence 753211000 01222222 378885444 4669999 999999887654443
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-16 Score=158.96 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=120.4
Q ss_pred CCceEEeCCCeEEEEEEe-cccC-ceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSV-GGDA-VLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v-~g~p-~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D~G~ 165 (977)
|....+.+|++++|.|.+ .+.+ .+.|.|+|++. .+ ..+++.... ..+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 677889999999999995 4443 57899999642 11 124555442 3489999999999999
Q ss_pred EEEEEEeCCe--eEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec------
Q psy574 166 YVCEAENAVG--KISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY------ 232 (977)
Q Consensus 166 Y~C~a~n~~g--~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~------ 232 (977)
|+|.|.|..+ .....+.|.|. .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+|+|..+...
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 9999999876 23344567776 4677766544443447999999999988 4554 89999999875321
Q ss_pred -CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 233 -PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 233 -~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
.....+.+... +.|.|..+..+|+|.|+ |.|.|.........
T Consensus 167 ~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~ 209 (216)
T 2xzc_L 167 EQDSKDSTYSLS------STLTLSKADYEKHKVYA-CEVTHQGLSSPVTK 209 (216)
T ss_dssp CCCTTTCCEEEE------EEEEEEHHHHTTCCEEE-EEEECTTCSSCEEE
T ss_pred cccCCCCCEEEE------EEEEECHHHhCCCCcEE-EEEEcCCCCCceEE
Confidence 00011122222 38999999999999999 99999876554333
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=164.71 Aligned_cols=185 Identities=20% Similarity=0.284 Sum_probs=133.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC--------------CCCceEEe-----ccceEEEccCc
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM--------------PEDRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l--------------~~~~~~~~-----~~~~L~I~~v~ 159 (977)
.+...|....+.+|++++|.|.+.+.|.+.+.|+|.. ... ..+++.+. ...+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 4566778889999999999999988899999999942 110 12344442 23579999999
Q ss_pred cCCCeEEEEEEEeCCe----eEEEEEEEEEee--------------------CCeEEecCCCcEEeeCCeEEEEEEEecC
Q psy574 160 LEDAGEYVCEAENAVG----KISASATLTVQM--------------------APIVRERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~--------------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+|+|.|+|.+.|..+ .....+.|.|.. +|.+...|....+.+|++++|.|.+.+.
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 164 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS 164 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence 9999999999998754 233456777775 5677778888899999999999999877
Q ss_pred CCCeEEEEEcCe--e--eeec--------CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee--EEE
Q psy574 216 PPPSTFWMLEGN--R--SLIY--------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL--ARA 281 (977)
Q Consensus 216 p~~~i~W~~~g~--~--~~~~--------~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~ 281 (977)
.+.+.|+|... . .... ......++.+.........|.|.+++.+|+|.|+ |.|.|..|... .-.
T Consensus 165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~~g~~~fG~gt 242 (256)
T 3tf7_C 165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYF-CASSDAPGQLYFGEGS 242 (256)
T ss_dssp -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEE-EEEEEETTEEEECCCE
T ss_pred -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEE-EEecCCCCccEECCCe
Confidence 67999998531 1 1110 0011345555543334468999999999999999 99999877542 224
Q ss_pred EEEEEC
Q psy574 282 SLTVSG 287 (977)
Q Consensus 282 ~l~V~~ 287 (977)
.|.|+.
T Consensus 243 ~l~v~~ 248 (256)
T 3tf7_C 243 KLTVLE 248 (256)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666665
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=163.59 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=117.5
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. ....+|+.+.. +++|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (225)
T 1op3_H 5 VESGGGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM 83 (225)
T ss_dssp EEECCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEE
Confidence 45778999999999999998 5555 6789999842 2110 11246777653 357999
Q ss_pred cCCCCCCCeEEEEEEEecCc-----e--eeeEeEEEEEEc----CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cce-EE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG-----T--RESTDAVLRVLV----KPYIIR-GPKDTTVSASSIIVFECSVGGD-AVL-TV 131 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g-----~--~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~~-~i 131 (977)
.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+.. .|.. .+.+|+.++|.|.+.|. |.+ .|
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v 162 (225)
T 1op3_H 84 HKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTV 162 (225)
T ss_dssp CSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred CCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEE
Confidence 99999999999999998754 2 122346788875 355443 3433 35789999999999876 776 99
Q ss_pred EEEECCeeCCCC--ceEEe------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 132 HWKRLGSAMPED--RMSVL------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 132 ~W~k~~~~l~~~--~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.|+|++..+... ..... ....|.|.++..+| |.|+|.|.|..+.
T Consensus 163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 999998764210 00111 12368999998888 9999999997654
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=170.08 Aligned_cols=177 Identities=14% Similarity=0.279 Sum_probs=124.3
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--EEe---------------ecCCCceEEEecC-----cE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--HPI---------------DFENSKRLRLVDG-----TN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~~l---------------~~~~~~r~~~~~~-----g~ 62 (977)
.+.. |..+.+.+|++|+|.|.+ .+. +.+.+.|+|.. ..+ ......|+.+..+ .+
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTS-SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY 80 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEE-CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEe-eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence 3455 888999999999999998 443 66889999832 110 1112346666633 27
Q ss_pred EEEcCCCCCCCeEEEEEEEec--------CceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCCCeEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVKNV--------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSASSIIVF 119 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~--------~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G~~v~l 119 (977)
|.|.+++.+|+|.|+|.+.+. ........+.|.|.. ++.+...|. ..+.+|++++|
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L 159 (280)
T 3fku_X 81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATL 159 (280)
T ss_dssp EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEE
T ss_pred EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEE
Confidence 999999999999999999886 112223345777776 555666666 89999999999
Q ss_pred EEEecc-cC-ceEEEEEECC--eeCC-------------CCceEEec---cceEEEccCccCCCeEEEEEEEeCC--ee-
Q psy574 120 ECSVGG-DA-VLTVHWKRLG--SAMP-------------EDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAV--GK- 176 (977)
Q Consensus 120 ~C~v~g-~p-~~~i~W~k~~--~~l~-------------~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~--g~- 176 (977)
.|.+.+ .+ .+.+.|+|.. ..+. .+|+.... ...|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~ 239 (280)
T 3fku_X 160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVV 239 (280)
T ss_dssp EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEE
T ss_pred EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceE
Confidence 999977 43 4789999842 2111 23444432 2359999999999999999999876 21
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
....+.|.|.
T Consensus 240 ~g~~t~l~V~ 249 (280)
T 3fku_X 240 FGGGTKLTVL 249 (280)
T ss_dssp EBCCCEEEEC
T ss_pred ECCCEEEEEC
Confidence 3344566665
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-16 Score=162.62 Aligned_cols=180 Identities=16% Similarity=0.280 Sum_probs=131.9
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEecc-----ceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLPS-----RSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~~-----~~L~I~~v 158 (977)
+....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+..+ .+|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 3456789999999999998765 6789999842 11 1 1245555432 34999999
Q ss_pred ccCCCeEEEEEEEeC----CeeEEEEEEEEEee----------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 159 RLEDAGEYVCEAENA----VGKISASATLTVQM----------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~~----------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
+.+|+|.|+|.+.|. .+.....+.|.|.. +|.+...|....+.+|++++|.|.+.+.+.+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 168 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS 168 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence 999999999999987 34445567888874 6777778888899999999999999999888
Q ss_pred eEEEEEcC--eee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 219 STFWMLEG--NRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 219 ~i~W~~~g--~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.+.|+|+. ... .+.. .....|+..... .+...|+|.+++.+|+|.|+ |.|.|...... ..+.|.|+.
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS-GSDYSLTISSLESEDFVDYY-CLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEECSCCGGGCSEEE-EEECSSSSCEECCCEEEEEC-
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC-CCEEEEEECCCChhHCEEEE-EEEeeCCCcEECCCEEEEEEC
Confidence 99999952 221 1110 112356666543 34468999999999999999 99998654432 346777776
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=166.60 Aligned_cols=181 Identities=19% Similarity=0.261 Sum_probs=128.9
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ..+|+.+.. ..+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (257)
T 1f3r_B 6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL 85 (257)
T ss_dssp EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence 34456789999999999998875 6889999962 211 134666543 248999999
Q ss_pred ccCCCeEEEEEEEeCCe-------e--EEEEEEEEEeeCC---------------eEEecCCCcEEeeCCeEEEEEEEec
Q psy574 159 RLEDAGEYVCEAENAVG-------K--ISASATLTVQMAP---------------IVRERPSDLRLEVGRDAVFLCGIEG 214 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-------~--~~~~~~L~V~~~p---------------~~~~~p~~~~v~~G~~v~L~C~~~g 214 (977)
+.+|+|.|+|.|.|..| . ....+.|.|..++ .+...|....+.+|++++|.|.+.+
T Consensus 86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 165 (257)
T 1f3r_B 86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ 165 (257)
T ss_dssp CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence 99999999999999853 1 2245678887643 2334466677899999999999999
Q ss_pred CCCCeEEEEE--cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 215 SPPPSTFWML--EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 215 ~p~~~i~W~~--~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
.+.+.+.|+| +|..+. ... .....++..... .+...|.|.+++.+|+|.|+ |.|.|........+.|.|
T Consensus 166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~g~gt~l~V 243 (257)
T 1f3r_B 166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-GTDYTLTISSLQPEDVATYF-CYQYNNGYTFGAGTKLEL 243 (257)
T ss_dssp CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-BTEEEEEECSCCGGGCSEEE-EEEESSSEEECCCCEECC
T ss_pred cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC-CCEEEEEECCCChhhCEEEE-EEEeCCCCeECCCEEEEE
Confidence 9888999999 454321 111 111356665532 34568999999999999999 999997511122345666
Q ss_pred EC
Q psy574 286 SG 287 (977)
Q Consensus 286 ~~ 287 (977)
+.
T Consensus 244 ~~ 245 (257)
T 1f3r_B 244 KA 245 (257)
T ss_dssp SS
T ss_pred eC
Confidence 55
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=165.42 Aligned_cols=185 Identities=15% Similarity=0.259 Sum_probs=134.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEEC--CeeC------------------CCCceEEecc-----ceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRL--GSAM------------------PEDRMSVLPS-----RSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~--~~~l------------------~~~~~~~~~~-----~~L~ 154 (977)
++..|.+..+.+|++++|.|.+.+.+ .+.+.|+|. +..+ ..+|+.+..+ .+|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 34556778899999999999998743 678999993 1111 1245555432 2499
Q ss_pred EccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee---------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 155 LSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM---------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
|.+++.+|+|.|+|.+.|..+.. ...+.|.|.. ++.+...|....+.+|++++|.|.+.+.+.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999999865543 3566777774 4667777888899999999999999998876
Q ss_pred ----eEEEEEcC--eee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEE
Q psy574 219 ----STFWMLEG--NRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLT 284 (977)
Q Consensus 219 ----~i~W~~~g--~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~ 284 (977)
.+.|+|++ ... .... .....++..... .+...|.|.+++.+|+|.|. |.|.|..+... .-+.|.
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~n~~~~~fg~gt~l~ 241 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGS-RTDFTLTINPVEADDVATYF-CQRSNEVPWTFGGGTKLE 241 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCCBCCCEEEE
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCC-CCEEEEEECCCCHHHCEEEE-EEEccCCCcEECCCEEEE
Confidence 89999953 221 1110 112356665442 34568999999999999999 99999765443 345788
Q ss_pred EECC
Q psy574 285 VSGP 288 (977)
Q Consensus 285 V~~~ 288 (977)
|...
T Consensus 242 v~~~ 245 (253)
T 3uzq_A 242 IKRP 245 (253)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8773
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-16 Score=160.58 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=130.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--c-eEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--R-MSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+ +...+.|+|++..+... + .....+..|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 83 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 83 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence 46777777766 8899999999999865 45689999999765310 0 011245689999999999999999998865
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
+. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. .. .. ....
T Consensus 84 ~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~-------~~--~~-~~~~ 151 (242)
T 1p6f_A 84 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-------QR--GY-GKVQ 151 (242)
T ss_dssp EECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE-------EE--EE-CSSE
T ss_pred ccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc-------cc--cC-CCce
Confidence 43 34567788874 56666666 4578999999999998764 458999999976532 11 11 1233
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCC---CceeEEEEEEEECC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAA---GSDLARASLTVSGP 288 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~---g~~~~~~~l~V~~~ 288 (977)
..|.|.+++.+|+|.|+ |.|.|.. ...+....|.|.+.
T Consensus 152 ~~l~I~~v~~~d~G~Y~-C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 152 AEFPLGPVTTAHRGTYR-CFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEEEECCGGGCEEEE-EEEEEETTEECCCCCCEEEEEEC-
T ss_pred EEEEeCCCccccCEEEE-EEEECCCCcccCCCCCEEEEEecc
Confidence 59999999999999999 9999874 23345677888773
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-16 Score=160.99 Aligned_cols=177 Identities=15% Similarity=0.218 Sum_probs=129.4
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
.+.+...|....+.+|++++|.|.+.+.+.+.+.|+|++. .. ..+++... .+.+|.|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 3455666778899999999999999888889999999431 10 12455544 346799999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEE---eeCCeEEecCCCcEEeeCCeEEEEEEEec-CC-CCeEEEEEcCeeeeec--
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGIEG-SP-PPSTFWMLEGNRSLIY-- 232 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V---~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p-~~~i~W~~~g~~~~~~-- 232 (977)
+|+|.|+|.+.+..+. ....+.|.| ..+|.+...+....+.+|+.++|.|.+.+ .| .+.+.|+++|..+...
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~ 183 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 183 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence 9999999999887653 334456666 35677776666666667999999999988 44 5799999999876421
Q ss_pred -----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 233 -----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 233 -----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
.....+.+.+. +.|.|.....+|.|.|+ |.|.|..........
T Consensus 184 ~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~ 231 (237)
T 3sob_L 184 ESVTEQDSKDSTYSLS------STLTLSKADYEKHKVYA-CEVTHQGLSSPVTKS 231 (237)
T ss_dssp EEECCCCTTTCCEEEE------EEEEEEHHHHTTCCEEE-EEEECTTCSSCEEEE
T ss_pred ecccccccCCCcEEEE------EEEEEcHHHccCCCcEE-EEEeeCCCCCceeee
Confidence 00112223322 37999999999999999 999999765544433
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=151.93 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=116.4
Q ss_pred cceecccc--eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKS--QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~--~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.++|.+ +.+..|++++|+|.+ +.|.| .|.|++.+..+ ++..+.. ++.|.|.+++.+|+|.|.|.|.
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 79 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRL--ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGS 79 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEE
Confidence 45565554 599999999999998 66666 99999955444 2333333 4579999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc----eEEEEEECCeeCCCCce---EE------
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV----LTVHWKRLGSAMPEDRM---SV------ 147 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~----~~i~W~k~~~~l~~~~~---~~------ 147 (977)
|..+. ....+.|+|+.+|........ .+.+|+.+ |.|.+.|. |. ++|.|+|++..|..... .+
T Consensus 80 n~~~~-~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~ 156 (210)
T 1gsm_A 80 CGGRT-FQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE 156 (210)
T ss_dssp ETTEE-EEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred eCCCc-eEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence 98765 557789999999976553222 67788888 99999775 63 58999999999865432 11
Q ss_pred e---cc------ceEEEccCccCCCeEEEEEEEeCC
Q psy574 148 L---PS------RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 148 ~---~~------~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
. .+ .+|.+.....+|.+.|+|+|.+..
T Consensus 157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L 192 (210)
T 1gsm_A 157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL 192 (210)
T ss_dssp CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence 0 11 223344666677799999999754
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=157.31 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=119.2
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-------CceEEEEEECCee------C------------CCCceEEec-----cce
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-------AVLTVHWKRLGSA------M------------PEDRMSVLP-----SRS 152 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-------p~~~i~W~k~~~~------l------------~~~~~~~~~-----~~~ 152 (977)
+..|..+.+.+|++++|.|.+.+. +.+.+.|+|++.. + ..+|+.+.. +.+
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 456778899999999999999654 5789999998652 1 124555543 347
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-E---EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecC----CCCeEE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-I---SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGS----PPPSTF 221 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-~---~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~----p~~~i~ 221 (977)
|.|.+++.+|+|.|+|.+.+..+. . ...+.|.|..+ |.+.. +. .+.+|+.++|.|.+.+. |.+.+.
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~ 160 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS 160 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence 999999999999999999987633 2 24678888863 44433 22 36789999999999764 788999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
|++++..... .+. ...+.|.|..+..+|.|.|+ |.|.|..+....++.+.
T Consensus 161 W~~~~~~~~~------~~~------~~~~~L~i~~~~~~~~g~Y~-C~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 161 WTGNALSPLD------PET------TRSSELTLTPRPEDHGTNLT-CQMKRQGAQVTTERTVQ 210 (214)
T ss_dssp EESSTTSSSC------SSC------CCSSEEEECCCTTCCSCEEE-EEEECC----CCEEEEE
T ss_pred EeCCCCccCC------CCc------eeEEEEEEecccHHcCcEEE-EEEEeCCCCcceEEEEE
Confidence 9999865321 110 12348999999999999999 99999876544444443
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=164.57 Aligned_cols=188 Identities=13% Similarity=0.188 Sum_probs=133.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe-----eC----------CCCceEEecc---ceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS-----AM----------PEDRMSVLPS---RSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~-----~l----------~~~~~~~~~~---~~L~I~~v~~ 160 (977)
.+.+...|....+.+|++++|.|.+.+.|.+.|.|+|++. .+ ...|+.+..+ .+|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3456667888899999999999999988889999999642 11 1245555422 3899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEeeCC--------------eEEecCCCcEEeeCCeEEEEEEEecCC--CCeEEEE
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQMAP--------------IVRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFWM 223 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p--------------~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~ 223 (977)
+|+|.|+|.+.|..+. ....+.|.|..+| .+...|....+.+|++++|.|.+.+.+ .+.+.|+
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 171 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV 171 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence 9999999999987554 3344677777543 233456677899999999999999876 4899999
Q ss_pred EcC--eee--eec----------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC---Cc--eeEEEEE
Q psy574 224 LEG--NRS--LIY----------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA---GS--DLARASL 283 (977)
Q Consensus 224 ~~g--~~~--~~~----------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~---g~--~~~~~~l 283 (977)
|++ ... ... ......++.+.... .+...|.|.+++.+|+|.|+ |.|.|.. +. ....+.|
T Consensus 172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~~~~~~~~~fg~gt~l 250 (276)
T 3auv_A 172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYY-CARFVFFLPYAMDYWGQGTLV 250 (276)
T ss_dssp EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEECSSTTCSCCCBCCCEEE
T ss_pred EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEE-EEEEcCcCCcCceEECCCEEE
Confidence 974 211 110 11234577776532 24468999999999999999 9999973 22 1233567
Q ss_pred EEEC
Q psy574 284 TVSG 287 (977)
Q Consensus 284 ~V~~ 287 (977)
.|..
T Consensus 251 ~V~~ 254 (276)
T 3auv_A 251 TVSS 254 (276)
T ss_dssp EEC-
T ss_pred EEcc
Confidence 7654
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=161.40 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=121.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--------------CCEEeecC-C-CceEEEecC----cEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--------------NGHPIDFE-N-SKRLRLVDG----TNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--------------~g~~l~~~-~-~~r~~~~~~----g~L~I 65 (977)
..+...|..+.+.+|++++|.|. .+.|.+.|.|+| ++..+... . ..|+.+..+ .+|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 80 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNCD--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI 80 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEEE--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred cceEeCCceEEecCCCCEEEEEE--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence 56778898999999999999994 477889999998 33333211 1 167777643 37999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEE------cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce-EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVL------VKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL-TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~------~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W 133 (977)
.+++.+|+|.|+|.+.+.. .......+.|.|. .+|.+. ..|....+.+|+.++|.|.+.| .|.+ .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 9999999999999998532 2223344577777 355443 4555556677999999999987 4544 8999
Q ss_pred EECCeeCCCCceEEe---------cc------ceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 134 KRLGSAMPEDRMSVL---------PS------RSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~---------~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|+|..+........ .+ ..|.|.....+| .|.|+|.|.|...
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l 218 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence 999988865322110 12 348888888888 9999999998653
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=166.73 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=119.6
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-----
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM----- 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l----- 140 (977)
.+++|.+.|.|.+.+..|..... ....+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.. ...
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~-------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~ 74 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGG-------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN 74 (270)
T ss_dssp --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred chhhhHHHHHHHHhccCCccccc-------cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence 45789999999999876643211 2234556677788999999999999865 67899999932 110
Q ss_pred -------CC----C-ceEEec----cceEEEccCccCCCeEEEEEEEeCC----eeEEEEEEEEEee------CCeEEe-
Q psy574 141 -------PE----D-RMSVLP----SRSLQLSDVRLEDAGEYVCEAENAV----GKISASATLTVQM------APIVRE- 193 (977)
Q Consensus 141 -------~~----~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~----g~~~~~~~L~V~~------~p~~~~- 193 (977)
.. + |+.+.. +.+|.|.+++.+|+|.|+|.+.+.. ......+.|.|.. +|.+..
T Consensus 75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~ 154 (270)
T 3qib_D 75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF 154 (270)
T ss_dssp EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence 00 0 444432 4589999999999999999999632 2333456777775 565544
Q ss_pred cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecCC-----------CccccEEEEEccCCceEEEEeecccC
Q psy574 194 RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRT 260 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~ 260 (977)
.+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..... ...+.+.+. +.|.|.....+
T Consensus 155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~ 228 (270)
T 3qib_D 155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQ 228 (270)
T ss_dssp ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEE------EEEEEEHHHHH
T ss_pred CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEE------EEEEEcHHHhc
Confidence 344445667999999999988 6666 8999999987632100 012333333 27889988888
Q ss_pred C-CCeEEEEEEEcCCCce
Q psy574 261 A-APLIILCLGVNAAGSD 277 (977)
Q Consensus 261 d-~G~Y~~C~a~n~~g~~ 277 (977)
| .|.|+ |.|.|.....
T Consensus 229 d~~g~Yt-C~v~~~~l~~ 245 (270)
T 3qib_D 229 NPRNHFR-CQVQFYGLSE 245 (270)
T ss_dssp STTCEEE-EEEEECCBCT
T ss_pred cCCCeEE-EEEEecCCCC
Confidence 8 99999 9999886543
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=161.77 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=124.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECCe--eC-------------CCCceEEec---cceEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQL 155 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I 155 (977)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.|.|+|++. .+ ..+|+.+.. +.+|.|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 34556667788899999999999998887 68999999642 11 124555542 238999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRS 229 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~ 229 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+|+|..+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999987653 22345677763 5777665555545589999999999884 443 79999999876
Q ss_pred eec-------CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 230 LIY-------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
... .....+.+... +.|.|..++.+|+|.|+ |.|.|.....
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~ 241 (252)
T 3bkj_L 194 QNGVLNSWTDQDSKDSTYSMS------STLTLTKDEYERHNSYT-CEATHKTSTS 241 (252)
T ss_dssp CSSEEEEECCCCTTTCCEEEE------EEEEEEHHHHHHCCEEE-EEEECTTCSS
T ss_pred CCCeeeecCcccCCCCCEEEE------EEEEEcchhccCCCeEE-EEEEeCCCCC
Confidence 321 00011122221 37999999999999999 9999987654
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=154.85 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=117.9
Q ss_pred ceEEeCCCeEEEEEEec----ccCceEEEEEECCeeCC-------------CCceEE--eccceEEEccCccCCCeEEEE
Q psy574 108 DTTVSASSIIVFECSVG----GDAVLTVHWKRLGSAMP-------------EDRMSV--LPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~----g~p~~~i~W~k~~~~l~-------------~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+.+.+|+++.|.|.+. +.|.+.+.|++++..+. .+|..+ ..+.+|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45788999999999994 45778999999988762 123332 245789999999999999999
Q ss_pred EEEeCCeeE-----EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 169 EAENAVGKI-----SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 169 ~a~n~~g~~-----~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|.|..|.. ...+.|.|..+ |.+.... ...|+.++|.|.+. |.|.|.|.|+++|..+.. ...
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~----~~~- 153 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNA----INT- 153 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECC----SEE-
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEecc----CCCCCeEEEEEecCCccCCCEEEEEECCEECcc----ccc-
Confidence 999976532 46778888765 4333221 13588999999995 999999999999987641 111
Q ss_pred EEEEEccC-Cc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 240 IQAEITSD-GM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 240 ~~~~~~~~-g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
......+ +. ....+..+..+|.|.|+ |.|.|..|..+....
T Consensus 154 -~~~~~~~~~~~~~~~~~~v~~~d~g~Y~-C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 154 -TVSQDPETELYAVSSKLDFNMTTNHSFM-CLIKYGHLRVNQTFN 196 (201)
T ss_dssp -EEEECTTTCCEEEEEEEEEETTSCEEEE-EEEEETTCCEEEEEE
T ss_pred -eEEecCCCcEEEEEEEEEEEecCCCEEE-EEEecCcceeeeEEe
Confidence 2222212 32 12234556678999999 999999998766544
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=160.08 Aligned_cols=175 Identities=19% Similarity=0.299 Sum_probs=130.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecc--cCceEEEEEECC--eeC------------------CCCceEEecc-----c
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVLPS-----R 151 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~ 151 (977)
+|.+...+....+.+|++++|.|.+.+ .+.+.+.|+|.. ..+ ..+|+.+..+ .
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 466777888999999999999999977 367889999842 111 1245655422 3
Q ss_pred eEEEccCccCCCeEEEEEEEeC------------CeeEEEEEEEEEee---------------CCeEEecCCCcEEeeCC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENA------------VGKISASATLTVQM---------------APIVRERPSDLRLEVGR 204 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~------------~g~~~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~ 204 (977)
+|.|.+++.+|+|.|.|.+.|. .+.....+.|.|.. ++.+...|....+.+|+
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 6999999999999999999986 33345567788875 45677778888999999
Q ss_pred eEEEEEEEecCCC-CeEEEEEc--Ceee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 205 DAVFLCGIEGSPP-PSTFWMLE--GNRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 205 ~v~L~C~~~g~p~-~~i~W~~~--g~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+++|.|.+.+.+. +.+.|+|. +... .... .....++.+... .....|.|.+++.+|+|.|. |.|.|..
T Consensus 166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~~~~ 243 (256)
T 3juy_B 166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS-GTDFTLTITRVEPEDFALYY-CQVYGAS 243 (256)
T ss_dssp CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEE-EEECCSS
T ss_pred CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc-CCEEEEEECCCCHhHCEEEE-EEEeeCC
Confidence 9999999998876 89999984 2221 1111 112356666543 34468999999999999999 9998864
Q ss_pred C
Q psy574 275 G 275 (977)
Q Consensus 275 g 275 (977)
.
T Consensus 244 ~ 244 (256)
T 3juy_B 244 S 244 (256)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=158.81 Aligned_cols=168 Identities=14% Similarity=0.206 Sum_probs=120.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--------------CCEEee-cCCCceEEEec----CcEEEEc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--------------NGHPID-FENSKRLRLVD----GTNLAIQ 66 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--------------~g~~l~-~~~~~r~~~~~----~g~L~I~ 66 (977)
..+...|..+.+.+|++|+|.|.+ .+ |.+.|.|+| ++.... .....|+.+.. +.+|.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 80 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS 80 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred cccccCcceeeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence 456778888999999999999998 44 778999999 222221 12235776654 3479999
Q ss_pred CCCCCCCeEEEEEEEec--CceeeeEeEEEEEE------cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 67 DSRKTDDGRYQCVVKNV--AGTRESTDAVLRVL------VKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~--~g~~~s~~~~l~V~------~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
+++.+|+|.|+|.+.+. ........+.|.|. .+|.+. ..+....+.+|+.++|.|.+.| .|.+ .+.|+|
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 160 (240)
T 3q5y_A 81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 160 (240)
T ss_dssp SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence 99999999999999832 22223344577776 345544 3455556677999999999987 5655 799999
Q ss_pred CCeeCCCCceE-----Eecc------ceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 136 LGSAMPEDRMS-----VLPS------RSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 136 ~~~~l~~~~~~-----~~~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
++..+...... ...+ ..|.|..+..+| .|.|+|.|.|...
T Consensus 161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL 212 (240)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence 99988653221 1122 348899998888 6799999998754
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=159.94 Aligned_cols=167 Identities=15% Similarity=0.206 Sum_probs=117.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeC--CEE---e-e----------cCCCceEEEec-----CcEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKN--GHP---I-D----------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~--g~~---l-~----------~~~~~r~~~~~-----~g~L~ 64 (977)
.+|..+.+.+|++|+|.|.+ .+.|. +.|.|+|+ |.. + . ....+|+.+.. +++|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (228)
T 3bae_H 5 KESGPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMK 83 (228)
T ss_dssp EEECCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEE
T ss_pred eCCCceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEE
Confidence 35778999999999999999 66664 88999984 221 1 1 11246777653 25799
Q ss_pred EcCCCCCCCeEEEEEEEecCc------e--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-E
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG------T--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-T 130 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g------~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~ 130 (977)
|.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~ 163 (228)
T 3bae_H 84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT 163 (228)
T ss_dssp ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence 999999999999999998764 1 122346788873 4655544333446789999999999875 777 9
Q ss_pred EEEEECCeeCCCCc-e------EEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 131 VHWKRLGSAMPEDR-M------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 131 i~W~k~~~~l~~~~-~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
|.|++++..+.... . .......|.|.++..+| |.|+|.|.|..+...
T Consensus 164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~ 217 (228)
T 3bae_H 164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK 217 (228)
T ss_dssp EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence 99999987642110 0 11123568999988866 999999999887643
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=140.79 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=98.8
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTL 701 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~ 701 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|. . |.|++|+|+|+..+ ........+.++.+++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~--~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 76 (119)
T 2ee2_A 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL--E--KIVESYQIRYWAAHDKEEAANRVQVTSQEYSA 76 (119)
T ss_dssp CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCS--C--TTCCEEEEEEEESSSCGGGCEEEEEETTCSEE
T ss_pred CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCC--C--CccceEEEEEEECCCcccCcEEEEcCCCEeEE
Confidence 5788899999999999999899999999999999999999994 3 88999999998864 2233455666778899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 77 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 114 (119)
T 2ee2_A 77 RLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAS 114 (119)
T ss_dssp EECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECCCCC
T ss_pred EECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCCCC
Confidence 99999999999999999999999999999999998765
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-16 Score=164.17 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=120.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE------------ee-cCCC-ceEEEec----CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP------------ID-FENS-KRLRLVD----GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~------------l~-~~~~-~r~~~~~----~g~L~I 65 (977)
+.+...|..+.+.+|++++|.|.+ . .+.+.|.|+| .+.. .. .... +|+.+.. +++|.|
T Consensus 27 ~~v~~~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 27 AGVSQTPSNKVTEKGKYVELRCDP-I-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp SSCBCCCSEEEEETTCCEEEEEBC-B-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred ceeEeCCCEEEecCCCCEEEEEEe-C-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 456677888999999999999998 3 5778999999 2221 11 1111 6777765 457999
Q ss_pred cCCCCCCCeEEEEEEEecC-ceeeeEeEEEEEEc------CCeEE-eCCCceEEeCCCeEEEEEEecccCce--EEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA-GTRESTDAVLRVLV------KPYII-RGPKDTTVSASSIIVFECSVGGDAVL--TVHWKR 135 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~-g~~~s~~~~l~V~~------~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k 135 (977)
.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+. ..+....+.+|+.++|.|.+.|.+++ .+.|+|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 9999999999999999742 22223445677775 55543 34555566779999999999875443 899999
Q ss_pred CCeeCCCCceE---------------EeccceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 136 LGSAMPEDRMS---------------VLPSRSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 136 ~~~~l~~~~~~---------------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|..+..+... ..-...|.|.....+| .|.|+|.|.|...
T Consensus 185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l 240 (268)
T 3pl6_D 185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL 240 (268)
T ss_dssp SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence 99887543211 1112457777777777 9999999998754
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=159.98 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=126.4
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccC----ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDA----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v 158 (977)
.+...|....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ...|+.+.. ..+|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 345567788999999999999998887 7899999963 211 123555432 237999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEc--Ce
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLE--GN 227 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~--g~ 227 (977)
+.+|+|.|+|.|.|..+. ....+.|.|..++ .+...+....+.+|++++|.|.+.+.|. +.+.|+|+ +.
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~ 162 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ 162 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence 999999999999998654 4455678887543 3455677888999999999999998874 58999996 32
Q ss_pred eee----ec--------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 228 RSL----IY--------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 228 ~~~----~~--------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
... .. ......++.+.... .+...|.|.+++.+|+|.|+ |.|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~~ 219 (240)
T 1moe_A 163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYY-CAPFG 219 (240)
T ss_dssp CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEECS
T ss_pred CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEE-EEEEe
Confidence 211 00 01123567666432 34468999999999999999 99985
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=159.32 Aligned_cols=183 Identities=19% Similarity=0.308 Sum_probs=130.0
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--ee---C--------------CCCceEEecc-----ceEEEc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SA---M--------------PEDRMSVLPS-----RSLQLS 156 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~---l--------------~~~~~~~~~~-----~~L~I~ 156 (977)
+..|....+.+|++++|.|.+.+. +.+.+.|+|.. .. + ..+|+.+..+ .+|.|.
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 91 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK 91 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence 344566779999999999999874 47899999942 11 1 1245555432 269999
Q ss_pred cCccCCCeEEEEEEEeC----CeeEEEEEEEEEeeC--------------CeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 157 DVRLEDAGEYVCEAENA----VGKISASATLTVQMA--------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~~~--------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
+++.+|+|.|+|.|.|. .......+.|.|..+ +.+...|....+.+|++++|.|.+.+.+.+
T Consensus 92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 171 (257)
T 3gkz_A 92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS 171 (257)
T ss_dssp SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence 99999999999999986 223445667888765 566667777899999999999999998877
Q ss_pred -eEEEEEc--Ceeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 219 -STFWMLE--GNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 219 -~i~W~~~--g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.+.|+|+ +.... ... .....++..... .+...|.|.+++.+|+|.|. |.|.+...... .-..|.|..
T Consensus 172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGS-GTSYSLTISSMEAEDAASYF-CHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEECC
T ss_pred eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecC-CCEEEEEECCCChHHCEEEE-EEEccCCceEEcCCEEEEEEe
Confidence 8999985 22211 110 111356665542 34468999999999999999 99987654332 234677765
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=146.88 Aligned_cols=121 Identities=25% Similarity=0.249 Sum_probs=106.2
Q ss_pred EEEEeecceeCCCCC-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC--cceEEE
Q psy574 616 FLVPFFGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN--SALINM 692 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~--~~~~~~ 692 (977)
.|+|+|..|.|++|. .+.++|.+++|. +|.++++...+.+++.|+|++| ...+|.|++|+|+|+..+. ......
T Consensus 2 sV~A~n~~G~g~~S~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~ 78 (130)
T 1wfo_A 2 SSGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITHRLNTTTANTATVE 78 (130)
T ss_dssp CCCCCCCCCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCC--SCCCSCCCEEEEEEEESSCCCSCCCEE
T ss_pred eeEEEecccCCCCCCCcEEEEcCCCCCC-CCCceEEEecCCCEEEEEEcCC--CCCCCceEEEEEEEEECCCCCceEEEE
Confidence 377899999999997 589999999996 8899999999999999999998 6789999999999998652 233334
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+..+.++++|.+|+|++.|.|+|+|+|.+|.|++|..+.++|....
T Consensus 79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 125 (130)
T 1wfo_A 79 VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125 (130)
T ss_dssp EECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSCC
T ss_pred EeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCCC
Confidence 66788999999999999999999999999999999999999887655
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=158.19 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=116.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee-----------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID-----------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~-----------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+. . .+- ....+|+.+..+ .+|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (232)
T 1dn0_B 5 QQWGAGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS 83 (232)
T ss_dssp EEECCCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCEEEeCCCcEEEEEEE-ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEEC
Confidence 45778899999999999998 4543 5789999842 2 110 112467776531 279999
Q ss_pred CCCCCCCeEEEEEEEecCc--e---eeeEeEEEEEEc----CCeEEe-CCCceEEeCC-CeEEEEEEeccc-Cce-EEEE
Q psy574 67 DSRKTDDGRYQCVVKNVAG--T---RESTDAVLRVLV----KPYIIR-GPKDTTVSAS-SIIVFECSVGGD-AVL-TVHW 133 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g--~---~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G-~~v~l~C~v~g~-p~~-~i~W 133 (977)
+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+.. .|. ..+.+| +.++|.|.+.|. |.+ .|.|
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W 162 (232)
T 1dn0_B 84 SVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSW 162 (232)
T ss_dssp SCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred CCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence 9999999999999984221 1 122345788875 354443 233 235578 999999999775 776 9999
Q ss_pred EE-CCeeCCCC----c----eEEeccceEEEccCcc--CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 134 KR-LGSAMPED----R----MSVLPSRSLQLSDVRL--EDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 134 ~k-~~~~l~~~----~----~~~~~~~~L~I~~v~~--~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
++ ++..+... . ........|.|..... +|.|.|+|.|.|..+.......+.|.
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 99 88776430 0 0111235688988887 88999999999998876555554443
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=154.41 Aligned_cols=173 Identities=18% Similarity=0.277 Sum_probs=124.4
Q ss_pred CCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCC-----------------CCceEEe----------ccceEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMP-----------------EDRMSVL----------PSRSLQL 155 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~-----------------~~~~~~~----------~~~~L~I 155 (977)
|.++.+..|++++|.|.+.+.+.+ .|.|+|++..+. ..+.... .+.+|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 445678899999999999876654 489999865431 1122211 3467999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.+++.+|+|.|+|.|.|..+. ......+.+..+|.+...+.......+..+.+.|.+ .+.|++.+.|++++..+....
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~ 167 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT 167 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence 999999999999999987665 445566777778877777777777788888887766 567888999999886553211
Q ss_pred ---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 234 ---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 234 ---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
....+.+.+. +.|.|.++..+|+|.|+ |.|.|..+.....+.+.+
T Consensus 168 ~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Yt-C~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 168 QEPGIQAGTVTII------SRYSLVPVGRADGVKVT-CRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEECSSTTCEEEE------EEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEEC
T ss_pred ceEEecCCCEEEE------EEEEEeeCCHHHCCEEE-EEEEcCCCCeEEEEEEEE
Confidence 1111222221 37999999999999999 999999887655544433
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-17 Score=167.77 Aligned_cols=168 Identities=14% Similarity=0.201 Sum_probs=115.5
Q ss_pred cccceecccceE--EeCCCcEEEEEECCCCC---C-CCeEEEEeCCEEeecCC--------CceEEEecCcEEEEcCCCC
Q psy574 5 REEFRVQPKSQR--VAAGDTALLECGPPRGH---P-EPTLVWKKNGHPIDFEN--------SKRLRLVDGTNLAIQDSRK 70 (977)
Q Consensus 5 ~~~~~~~p~~~~--v~~G~~v~L~C~~~~g~---P-~~~v~W~k~g~~l~~~~--------~~r~~~~~~g~L~I~~v~~ 70 (977)
.|.+.+.|.... +.+|++++|.|.+ .+. | .+.|.|+|++..+.... ++++. ..+.|.|.+++.
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~ 85 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVV-VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR--VVSTLPIQHQDW 85 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEE-EEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE--EEEEEECCHHHH
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEE-cCCccCCCceEEEEEECCccccCcccccccccCCCeEE--EEEEEEEcHHHc
Confidence 455666666655 8999999999999 454 4 37999999998874211 11222 135799999999
Q ss_pred CCCeEEEEEEEecCcee-eeEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC--
Q psy574 71 TDDGRYQCVVKNVAGTR-ESTDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-- 143 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~-~s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-- 143 (977)
+|+|.|+|.|.|..+.. ....+.+ .+..+|.+...+......+|+.++|.|.+.| .|.+ .|.|+|++..+...
T Consensus 86 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 165 (218)
T 2rgs_A 86 MSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD 165 (218)
T ss_dssp HTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE
T ss_pred CCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee
Confidence 99999999999986643 1222222 4456777765554433346999999999988 5765 99999999887532
Q ss_pred -ceEEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 144 -RMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 144 -~~~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.....+++ |.|.....+|.|.|+|.|.|...
T Consensus 166 ~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 166 TAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred cccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence 111123443 44444445569999999999764
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-15 Score=168.15 Aligned_cols=263 Identities=15% Similarity=0.139 Sum_probs=176.2
Q ss_pred CCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEE-Ee-cCceEEEeccCCC--CCeEEEEEEEcCCCceEEEE
Q psy574 299 GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVN-VT-GDGSLVLTDVTKE--DSGEYTCVVKSPHGSASWSA 374 (977)
Q Consensus 299 ~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~-~~-~~~sl~I~~v~~~--d~G~Y~C~a~n~~G~~~~s~ 374 (977)
.|.+..+..|+++++.|..... ......++.. .... +. ....++|.++... ...+|.|.... ....+
T Consensus 204 fP~~~vv~~GS~vt~~Ci~~~~-~~~~~l~~~~----~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~----~~~g~ 274 (483)
T 3e0g_A 204 FPQDKVILVGSDITFCCVSQEK-VLSALIGHTN----CPLIHLDGENVAIKIRNISVSASSGTNVVFTTED----NIFGT 274 (483)
T ss_dssp ESCSEEEETTCCEEEEECCSSC-EEEEESSSCC----BCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS----CEEEE
T ss_pred eccCCEEeCCCCEEEEEEeCcc-ccceecCccc----ceeEEecCCEEEEEEeCCCCccCccceEEEecCC----cccce
Confidence 3566778999999999988752 1222222211 1111 11 1234777777653 33469998532 34455
Q ss_pred EEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCC--CcccceEEEEEeecCCCCCCCCCCCCc
Q psy574 375 SLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIG--SSSLLGYQVEMYSRPLPSSSPSGDTAT 452 (977)
Q Consensus 375 ~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~--~~~i~~Y~I~~~~~~~~~~~~~~~~~~ 452 (977)
.+.+. .+|++|.++.+......++.++|.++.+.+ +...+.|.|.|+....
T Consensus 275 ~l~vg----------------~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~----------- 327 (483)
T 3e0g_A 275 VIFAG----------------YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK----------- 327 (483)
T ss_dssp EEEEE----------------CCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCC-----------
T ss_pred EEECc----------------CCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCC-----------
Confidence 67666 448899999998888889999999987732 3348999999874321
Q ss_pred ccEEEece----ecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCC
Q psy574 453 ATWVRVAT----NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGR 528 (977)
Q Consensus 453 ~~w~~~~~----~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~ 528 (977)
...... ......+.+..|.+.+.|.|+|.|.|..|.+. |. ..+. ......|
T Consensus 328 --~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~----~~~~-~~~~VkP----------------- 382 (483)
T 3e0g_A 328 --YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST----ILVN-ITEKVYP----------------- 382 (483)
T ss_dssp --EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE----EEEC-GGGGBCC-----------------
T ss_pred --CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc----eEEE-eccccCC-----------------
Confidence 111111 12344678999999999999999999988765 21 1221 1111122
Q ss_pred cchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEee-cCccceEEEC
Q psy574 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLH-AGEASGFLVT 605 (977)
Q Consensus 529 g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~-~~~~~~~~i~ 605 (977)
.+|.++++...+++++.|+|++| .+..+..|+|+|+..+....|....+.. .....++.|.
T Consensus 383 ----------------~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~ 446 (483)
T 3e0g_A 383 ----------------HTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALD 446 (483)
T ss_dssp ----------------CCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCC
T ss_pred ----------------CCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEe
Confidence 23377888888899999999999 3456789999999987544554332221 1223468999
Q ss_pred CCCCCcEEEEEEEEeeccee---CCCCCceEEeccCC
Q psy574 606 GLAHYSRYEFFLVPFFGSVD---GKPSNLRAVRTLEC 639 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~---g~~s~~~~~~T~~~ 639 (977)
+|+|++.|.|+|+|. ..|. |++|..+.++|.|+
T Consensus 447 ~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E~ 482 (483)
T 3e0g_A 447 KLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTEA 482 (483)
T ss_dssp SCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCCC
T ss_pred ccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCCC
Confidence 999999999999999 6665 67778888999875
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=136.14 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=82.0
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
.+|+++|.++.+...++++|.|+|++|+.+..||.|++|+|.|+..+. .......+.++.++++|.+|+|++.|.|+
T Consensus 2 ~~P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~ 81 (102)
T 3n1f_C 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIK 81 (102)
T ss_dssp --CCSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEE
T ss_pred CCCCCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEE
Confidence 368889999999999999999999999766799999999999998652 24556677778889999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeec
Q psy574 716 LAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~ 736 (977)
|+|+|.+|.|++|.++.++|.
T Consensus 82 V~A~n~~G~G~~S~~~~~~T~ 102 (102)
T 3n1f_C 82 MQCFNEGGESEFSNVMICETK 102 (102)
T ss_dssp EEEEETTEECCCCCCEEEECC
T ss_pred EEEECCCcCCCCCCCEEeecC
Confidence 999999999999999998873
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-15 Score=146.73 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=120.7
Q ss_pred eEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.+..|++++|.|.+ +.|.| .|+|++.+..+ ++... .....|.|.+++.+|+|.|.|.|.|..+...+.+.|+|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 588999999999999 88877 99999976555 33332 24578999999999999999999999998889999999
Q ss_pred eeCCeEEe-cCCCcEEeeCCeEEEEEEEecC-CC----CeEEEEEcCeeeeecCC--------------CccccEEEEEc
Q psy574 186 QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGS-PP----PSTFWMLEGNRSLIYPG--------------DRVDNIQAEIT 245 (977)
Q Consensus 186 ~~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p~----~~i~W~~~g~~~~~~~~--------------~~~~~~~~~~~ 245 (977)
..+|.... .+. ...+|+.+ |.|.+.+. |. ++|.|+|++.++..... .....|++.
T Consensus 94 ~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt-- 168 (210)
T 1gsm_A 94 YAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT-- 168 (210)
T ss_dssp EBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE--
T ss_pred EecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE--
Confidence 99886554 332 66678888 99999885 64 48999999988631100 001122222
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
++|.+.....+|.+.|+ |.|.+..........
T Consensus 169 ----s~~~~~~~~~D~~~~~t-C~a~~~L~~~~~~~~ 200 (210)
T 1gsm_A 169 ----ERWRLPPLGTPVPPALY-CQATMRLPGLELSHR 200 (210)
T ss_dssp ----EEEECCCCCSSCCSEEE-EEEEEEETTEEEEEE
T ss_pred ----EEEeecCCcccCCceEE-EEEEeeCCCCccccc
Confidence 25666677777789999 999998765544443
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=157.16 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=119.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++ ... ..+|+.+.. +.+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 35667899999999999998765 4789999863 211 135666542 238999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeec
Q psy574 159 RLEDAGEYVCEAENAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIY 232 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~ 232 (977)
+.+|+|.|+|.+.|.. .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+...
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 164 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH 164 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence 9999999999999863 22233567776 35666655544567899999999999986 888 99999998753211
Q ss_pred CCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 233 PGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 233 ~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.... .+.+.. .+.|.|..+..+| |.|+ |.|.|..|.....
T Consensus 165 ~~~~~~~~~~~~~------~s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 165 TFPAVLQSDLYTL------SSSVTVPSSTWPS-ETVT-CNVAHPASSTKVD 207 (210)
T ss_dssp ECCCEEETTEEEE------EEEEEEEGGGTTT-SCCE-EEEEEGGGTEEEE
T ss_pred EcCCccCCCcEEE------EEEEEEcHHHcCC-CcEE-EEEEeCCCCcccc
Confidence 0000 012222 2379999998877 9999 9999998876443
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=157.77 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=77.6
Q ss_pred cEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCC-CCe-eeeEEEEEEEecCCc
Q psy574 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGT-HNG-VIRTYQIIVGGGNNS 687 (977)
Q Consensus 611 t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~-~ng-~i~~Y~v~~~~~~~~ 687 (977)
..|.|+|.|.|..|.. +....|.....+.+.||.+|++... ....+.|+|++|.... +.+ ..+.|+|+|+..+..
T Consensus 184 ~~y~~~V~A~n~lg~~--s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~ 261 (306)
T 3d85_D 184 LPIEVMVDAVHKLKYE--QYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKR 261 (306)
T ss_dssp SCEEEEEEEEETTEEE--EEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC---
T ss_pred EEEEEEEEEEccCCcc--ccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCC
Confidence 4799999999988754 2234454433343459999999874 3378999999995222 122 558999999986632
Q ss_pred ceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceE
Q psy574 688 ALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732 (977)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~ 732 (977)
.+... .....+++.| .+++.|.|+|||.+..|.|.||+-..
T Consensus 262 ~~~~~-~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~ 302 (306)
T 3d85_D 262 EKKDR-VFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS 302 (306)
T ss_dssp ---CE-EEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred ccEEE-eeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence 22222 3345577776 46999999999999999999997654
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-16 Score=160.21 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCCeEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~ 167 (977)
|....+.+|++++|.|.+.+.|.+.|.|+|++ ..+ ..+++.+. ...+|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 77889999999999999988888889999953 222 13455554 2348999999999999999
Q ss_pred EEEEeC-Cee--EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCC---
Q psy574 168 CEAENA-VGK--ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGD--- 235 (977)
Q Consensus 168 C~a~n~-~g~--~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~--- 235 (977)
|.|.|. .+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|+++|..+......
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 165 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP 165 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence 999973 222 2334567774 56777766655566789999999999887 54 799999999876422100
Q ss_pred ---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 236 ---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 236 ---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..+ +... +.|.|.++..+|+|.|+ |.|.|..+..
T Consensus 166 ~~~~~~-~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~ 202 (212)
T 1nfd_E 166 SKQGQN-YMTS------SYLSLTADQWKSHNRVS-CQVTHEGETV 202 (212)
T ss_dssp BCSSSC-EEEE------EBCCEEHHHHHTCSCEE-EEEECTTTTC
T ss_pred eecCCC-ceEE------EEEEEchhhcCCCCeEE-EEEEeCCceE
Confidence 011 2222 37999999999999999 9999987753
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=159.21 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=120.5
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C-----------------CCCceEEec-----cceEEEc
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M-----------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l-----------------~~~~~~~~~-----~~~L~I~ 156 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ..+|+.+.. +.+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4566889999999999998765 6789999953 11 0 124555543 3489999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEc
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLE 225 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~ 225 (977)
+++.+|+|.|+|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|+++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 166 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 166 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence 9999999999999998654 222345777763 4666555444456789999999999985 888 9999999
Q ss_pred CeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 226 GNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 226 g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|..+...... ..+.+.+ .+.|.|.+++..| |.|+ |.|.|..|.......|
T Consensus 167 g~~~~~~~~~~~~~~~~~~~------~s~L~i~~~~~~d-g~y~-C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 167 SLSSGVHTFPAVLQSDLYTL------SSSVTVPSSTWPS-ETVT-CNVAHPASSTKVDKKI 219 (222)
T ss_dssp TBCTTEEEEEEEEETTEEEE------EEEEEEETTTTTT-SCCE-EEEEEGGGTEEEEEEC
T ss_pred CeEcceEeccccccCCcEEE------EEEEEECchhcCC-CeEE-EEEEccCCCCcEEEec
Confidence 8754210000 0111211 1379999999899 9999 9999998876554433
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=156.93 Aligned_cols=172 Identities=15% Similarity=0.217 Sum_probs=123.4
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLED 162 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D 162 (977)
.+...|....+.+|++++|.|.+.+.|.+.+.|+|+.. .. ..+|+.+.. ..+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 35566778899999999999999988889999999631 11 134555432 3479999999999
Q ss_pred CeEEEEEEEeCCee-EEEEEEEEEeeCCe-------------EEecCCCcEEeeCCeEEEEEEEecCC--CCeEEEEEcC
Q psy574 163 AGEYVCEAENAVGK-ISASATLTVQMAPI-------------VRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFWMLEG 226 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-------------~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~~g 226 (977)
+|.|+|.+.|..+. ....+.|.|..+|. ....+....+.+|++++|.|.+.+.+ .+.+.|+|++
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~ 162 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF 162 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence 99999999987543 23456788876552 33444456799999999999999876 4789999963
Q ss_pred --eeee--ec---CC------CccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 227 --NRSL--IY---PG------DRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 227 --~~~~--~~---~~------~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
..+. .. .+ ....++.+.... .....|.|.+++.+|+|.|. |.|.|.
T Consensus 163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~~~ 222 (242)
T 2znx_A 163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY-CANXDG 222 (242)
T ss_dssp TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEE-EEETTS
T ss_pred CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEE-EeccCC
Confidence 2221 10 00 124567766431 23469999999999999999 999874
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=156.52 Aligned_cols=169 Identities=20% Similarity=0.298 Sum_probs=121.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C-----------------CCCceEEec-----cceEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M-----------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l-----------------~~~~~~~~~-----~~~L~I 155 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++ .. + ..+|+.+.. +.+|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35667899999999999998765 6899999963 11 1 024665542 238999
Q ss_pred ccCccCCCeEEEEEEEeCCee---EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK---ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
.+++.+|+|.|+|.+.+..+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 165 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA 165 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence 999999999999999987532 1245677776 35666655544456789999999999987 888 99999988
Q ss_pred eeee--ecCCC-ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 227 NRSL--IYPGD-RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 227 ~~~~--~~~~~-~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
.... ..+.. ..+.+... +.|.|.++..+| |.|+ |.|.|..|.....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 166 LSSGVRTVSSVLQSGFYSLS------SLVTVPSSTWPS-QTVI-CNVAHPASKVDLIK 215 (220)
T ss_dssp CCTTEEECCCEEETTEEEEE------EEEEECGGGTTT-SCCE-EEEEEGGGTEEEEE
T ss_pred cccceEEcCCcccCCeEEEE------EEEEEcchhcCC-ceEE-EEEEECCccEeeee
Confidence 6410 00100 01233322 389999998866 9999 99999999765543
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-15 Score=153.73 Aligned_cols=162 Identities=19% Similarity=0.350 Sum_probs=116.3
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE---e--------------ecCCCceEEEecCc-----EE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I--------------DFENSKRLRLVDGT-----NL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~---l--------------~~~~~~r~~~~~~g-----~L 63 (977)
.+|..+.+.+|++|+|.|.+ .+. +.+.|.|+|. +.. + .....+|+.+..++ +|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (221)
T 3m8o_H 5 VESGGGLVQPGGSLKLSCAA-SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFL 83 (221)
T ss_dssp EEESCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEE
T ss_pred EccCCEEEcCCCCEEEEEEc-ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEE
Confidence 45777999999999999998 443 3678999973 211 1 01123677776433 59
Q ss_pred EEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEE----cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCc--eEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVL----VKPYII-RGPKDTTVSASSIIVFECSVGG-DAV--LTVHWK 134 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~----~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~--~~i~W~ 134 (977)
.|.+++.+|+|.|.|.+.+... ......+.|.|. .+|.+. ..+... .+|+.++|.|.+.| .|. +.+.|+
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 84 QMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWS 161 (221)
T ss_dssp EECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred EECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence 9999999999999999988641 222344567775 345554 334333 78999999999987 675 589999
Q ss_pred ECCeeCC-----------CCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 135 RLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 135 k~~~~l~-----------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+++..+. .+.+. ....|.|..+..+|.|.|+|.|.|..+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 162 ESGQGVTARNFPPSQDASGDLYT--TSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp CCSTTCEEEECCCEECSSSSCEE--EEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred ECCEECceEEcCceeeCCCCcEE--EEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 9987762 11121 2246999999999999999999998754
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=148.60 Aligned_cols=153 Identities=12% Similarity=0.200 Sum_probs=117.7
Q ss_pred CCceEEeCCCeEEEEEEe--cccCceEEEEEE--CCeeC-----------CCCceEEeccceEEEccCccCCCeEEEEEE
Q psy574 106 PKDTTVSASSIIVFECSV--GGDAVLTVHWKR--LGSAM-----------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v--~g~p~~~i~W~k--~~~~l-----------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
+..+...+|++++|.|.. .+.+.+.|.|+| ++..+ ..+|+.+..+++|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 345577899999999954 235678999999 87765 356888888899999999999999999999
Q ss_pred EeCCeeE--EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 171 ENAVGKI--SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 171 ~n~~g~~--~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
.|..|.. ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.+.|+++|..+. . .
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-----~-------~- 144 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLK-----L-------S- 144 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEE-----E-------E-
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECC-----C-------C-
Confidence 9988764 45677888753 33332 34479999999999999999999997651 0 0
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
.. .|.+.. ...|+|.|+ |.|.|..+.......+.
T Consensus 145 -~~--~i~~~~-~~~d~G~Y~-C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 145 -QR--VITHKW-TTSLSAKFK-CTAGNKVSKESSVEPVS 178 (182)
T ss_dssp -SS--CEEEEC-CSCEEEEEE-EEEECSSCEEEEEEEEE
T ss_pred -Cc--EEEEec-ccCCCcEEE-EEEEeCCCCcEEcceec
Confidence 11 344433 478999999 99999999887776653
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-16 Score=160.16 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=119.1
Q ss_pred cCCeEEeCCCceE--EeCCCeEEEEEEeccc---C-ceEEEEEECCeeCCCCce---------EEeccceEEEccCccCC
Q psy574 98 VKPYIIRGPKDTT--VSASSIIVFECSVGGD---A-VLTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLED 162 (977)
Q Consensus 98 ~~P~~~~~p~~~~--v~~G~~v~l~C~v~g~---p-~~~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D 162 (977)
.+|.+...|.... +.+|++++|.|.+.|. | .+.|.|+|++..+..... .+.....|.|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 3455544444443 7899999999999876 3 389999999987654321 11123579999999999
Q ss_pred CeEEEEEEEeCCeeE--EEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecCCCc
Q psy574 163 AGEYVCEAENAVGKI--SASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~--~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~~~~ 236 (977)
+|.|+|.|.|..+.. .+.+.+ .+..+|.+...+......+|+.++|.|.+.| .|.+ .|.|+++|..+..
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~----- 162 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN----- 162 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC-----
T ss_pred CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccC-----
Confidence 999999999987643 333332 4557888776655543346999999999998 5665 9999999987531
Q ss_pred cccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 237 VDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 237 ~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..........+|. +.|.|.....+|.|.|+ |.|.|.....
T Consensus 163 ~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~Yt-C~a~n~~l~~ 206 (218)
T 2rgs_A 163 YKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFS-CNVRHEGLKN 206 (218)
T ss_dssp EEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEE-EEEECTTSGG
T ss_pred ceecccEECCCCCEEEEEEEEECHHHcCCCCeEE-EEEEcCCCCC
Confidence 1111111122232 25666666666799999 9999987643
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=155.58 Aligned_cols=177 Identities=16% Similarity=0.246 Sum_probs=120.7
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I 155 (977)
+..|....+.+|++++|.|.+.+.+ .+.+.|+|++ .. + ..+|+.+.. +.+|.|
T Consensus 4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (227)
T 1mju_H 4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL 83 (227)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence 3456677899999999999998776 6789999964 21 1 024665542 358999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNR 228 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~ 228 (977)
.+++.+|+|.|.|.+.+..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 163 (227)
T 1mju_H 84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS 163 (227)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCc
Confidence 999999999999999986432 22446788874 4555544333456789999999999985 766 9999999875
Q ss_pred eeecCCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+....... .+.+... +.|.|..++.+| |.|+ |.|.|..+.......+.+..
T Consensus 164 ~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 164 SGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp TTEEECCCEEETTEEEEE------EEEEECTTTTTT-SCCE-EEEEEGGGTEEEEEECCCCC
T ss_pred CCcEECCceecCCeEEEE------EEEEEchhhcCC-CeEE-EEEEECCCCcceEEEeCCCC
Confidence 32110000 0222222 389999998888 9999 99999887766666665555
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=160.49 Aligned_cols=182 Identities=18% Similarity=0.303 Sum_probs=130.9
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--eC------------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--AM------------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~l------------------~~~~~~~~~-----~~~L~I 155 (977)
...|....+.+|++++|.|.+.+.+ .+.+.|+|++. .+ ..+|+.+.. ..+|.|
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 109 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL 109 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence 3456678899999999999998774 57899999641 11 124555542 257999
Q ss_pred ccCccCCCeEEEEEEEeCCe---e--EEEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecC
Q psy574 156 SDVRLEDAGEYVCEAENAVG---K--ISASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g---~--~~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+++.+|+|.|+|.+.|..| . ....+.|.|..+ +.+...|....+.+|++++|.|.+.+.
T Consensus 110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 189 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS 189 (282)
T ss_dssp CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence 99999999999999999865 1 224567888754 345556777789999999999999998
Q ss_pred CCCeEEEEE--cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEE
Q psy574 216 PPPSTFWML--EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTV 285 (977)
Q Consensus 216 p~~~i~W~~--~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V 285 (977)
+ +.+.|+| ++..+. ... .....++..... .+...|+|.+++.+|+|.|+ |.|.|..... ...+.|.|
T Consensus 190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS-GTSYSLTISRMEAEDAATYY-CQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEE
T ss_pred C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC-CCEEEEEEccCChhHCEEEE-EEEeeCCCceEeCCEEEEE
Confidence 8 8999999 454331 110 012356666532 34568999999999999999 9998864322 23456777
Q ss_pred EC
Q psy574 286 SG 287 (977)
Q Consensus 286 ~~ 287 (977)
..
T Consensus 267 ~~ 268 (282)
T 1qok_A 267 KR 268 (282)
T ss_dssp C-
T ss_pred ec
Confidence 65
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-16 Score=161.92 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=119.7
Q ss_pred ecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+ .+...+.|+|.. . .+ .....+|+.+..+ .+|.|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (253)
T 3liz_H 5 VESGGGLVQPGGSLKLSCAA-SGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQM 83 (253)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEE
T ss_pred EcCCCEEECCCCcEEEEEEe-eCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEE
Confidence 45778999999999999998 44 345789999832 1 11 0112357766543 24999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~ 136 (977)
.+++.+|+|.|.|.+.+.. .......+.|.|. .+|.+...+....+..|+.++|.|.+.| .|.+ .+.|+++
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 163 (253)
T 3liz_H 84 SSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 163 (253)
T ss_dssp CSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeC
Confidence 9999999999999998752 1112334577776 4566664444456678999999999977 6766 8999999
Q ss_pred CeeCCC---C----ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 137 GSAMPE---D----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 137 ~~~l~~---~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+..+.. . ...+...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 164 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp TBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 874310 0 0112223679999999999 99999999998876666666554
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=160.74 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=113.7
Q ss_pred eecccceE-EeCCCcEEEEEECCCCCC----CCeEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCCCCeE
Q psy574 9 RVQPKSQR-VAAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 9 ~~~p~~~~-v~~G~~v~L~C~~~~g~P----~~~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
...|.... +.+|++++|.|.+ .+.| ...|.|+|++..+... ..+++. ..+.|.|.+++.+|+|.
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~ 82 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVV-VDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR--SVSELPIMHQDWLNGKE 82 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEE-EEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE--EEEEEECCHHHHHTTCC
T ss_pred EeCcChhhhhccCCceEEEEEE-eCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE--EEEEEEEehhHcCCCCE
Confidence 33455444 8999999999999 5553 3589999999877321 112222 13579999999999999
Q ss_pred EEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCc---eEE
Q psy574 76 YQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR---MSV 147 (977)
Q Consensus 76 Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~---~~~ 147 (977)
|+|.|.|..+... ...+.+ .+..+|.+...+......+|+.+.|.|.+.|. |. +.|.|+|++..+.... ...
T Consensus 83 Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 162 (207)
T 2vol_A 83 FKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM 162 (207)
T ss_dssp EEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE
T ss_pred EEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE
Confidence 9999999876421 223333 45567877655544334469999999999874 55 4899999999875421 122
Q ss_pred eccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 148 LPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 148 ~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
..+++ |.|.....+|.|.|+|.|.|...
T Consensus 163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 23443 55555556789999999999754
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=156.39 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=122.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDV 158 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v 158 (977)
+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ ..+|+.+.. ..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 45567788999999999999998887 6899999953 111 134555432 247999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC-------------eEEecCCCcEEeeCCeEEEEEEEecCC--CCeEEE
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAP-------------IVRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFW 222 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p-------------~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W 222 (977)
+.+|+|.|+|.+.|..+. ....+.|.|..++ .....+....+.+|++++|.|.+.+.+ .+.+.|
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W 163 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW 163 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence 999999999999987553 3344678887542 233444556799999999999999875 568999
Q ss_pred EEcC--eee--ee--cC--------CCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 223 MLEG--NRS--LI--YP--------GDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 223 ~~~g--~~~--~~--~~--------~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+|++ ... +. .. ....+|+.+... ..+...|.|.+++.+|+|.|. |.|.|.
T Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~ 228 (247)
T 1svz_A 164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYF-CVRDRH 228 (247)
T ss_dssp EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEEEG
T ss_pred EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEE-EEEecc
Confidence 9974 211 11 00 012456766542 234469999999999999999 999985
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-16 Score=157.74 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=118.4
Q ss_pred EEeCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCce---------EEeccceEEEccCccCCCeEEE
Q psy574 102 IIRGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 102 ~~~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
++..|.... +.+|++++|.|.+.|.+ ...|.|+|++..+..... .+.....|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 84 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK 84 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence 445565554 88999999999998774 348999999977653211 1112357999999999999999
Q ss_pred EEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|.|..+. .++.+.+ .+..+|.+...+.......|+.++|.|.+.|. |. ..|.|+++|..+... ....
T Consensus 85 C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-----~~~~ 159 (207)
T 2vol_A 85 CRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENY-----KNTQ 159 (207)
T ss_dssp EEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE-----EECC
T ss_pred EEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCc-----ccCC
Confidence 999998775 3344444 45678888766655444469999999999985 44 389999999865211 1111
Q ss_pred EEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 242 AEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 242 ~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.....+|. +.|.|.....+|.|.|+ |.|.|....
T Consensus 160 ~~~~~~g~~~~~s~l~i~~~~~~~~g~yt-C~a~n~~l~ 197 (207)
T 2vol_A 160 PIMDTDGSYFVYSKLNVQKSNWEAGNTFT-CSVLHEGLH 197 (207)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHSSCCEEE-EEEECTTSG
T ss_pred ceECCCCCEEEEEEEEECHHHcCCCCEEE-EEEECCCCC
Confidence 11122332 25677777777899999 999998754
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=157.78 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=118.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-----------cC-CCceEEEec-----Cc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-----------FE-NSKRLRLVD-----GT 61 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-----------~~-~~~r~~~~~-----~g 61 (977)
+.+...|..+.+.+|++|+|.|.+ .+. +.+.|.|+|+. . .+- .. ..+|+.+.. +.
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 80 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTS 80 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred CccCcCCceEEecCCCcEEEEEEe-CCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEE
Confidence 346777889999999999999998 443 66899999842 2 111 01 356777653 34
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-----e-eeeEeEEEEEEcC-------CeEEe-CCCceEEeCCCeEEEEEEeccc-
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-----T-RESTDAVLRVLVK-------PYIIR-GPKDTTVSASSIIVFECSVGGD- 126 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-----~-~~s~~~~l~V~~~-------P~~~~-~p~~~~v~~G~~v~l~C~v~g~- 126 (977)
+|.|.+++.+|+|.|.|.+.+... . .....+.|.|..+ |.... .|....+.+|+.++|.|.+.|.
T Consensus 81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~ 160 (242)
T 1hxm_B 81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFF 160 (242)
T ss_dssp EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEES
T ss_pred EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEE
Confidence 799999999999999999988631 1 1223467888753 32222 2444456679999999999876
Q ss_pred Cc-eEEEEEECCe-eCCCCc---eEEe-----ccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 127 AV-LTVHWKRLGS-AMPEDR---MSVL-----PSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 127 p~-~~i~W~k~~~-~l~~~~---~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
|. +.|.|++++. .+.... .... ....|.|.++.. | |.|+|.|.|..+..
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~ 219 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN 219 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence 64 7999999987 554321 1111 124688887775 5 99999999987753
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=160.97 Aligned_cols=171 Identities=13% Similarity=0.236 Sum_probs=121.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EE---ee------------cCCCceEEEec----CcEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID------------FENSKRLRLVD----GTNL 63 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~---l~------------~~~~~r~~~~~----~g~L 63 (977)
...+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ .. +. .....|+.+.. +.+|
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL 102 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 102 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence 3566778889999999999999999 67788999999963 11 10 01246777763 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCc-----eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-e
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAG-----TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-L 129 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g-----~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~ 129 (977)
.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 182 (279)
T 2wbj_D 103 TVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV 182 (279)
T ss_dssp EESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred EEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCc
Confidence 9999999999999999998421 1112335677764 455543 2444445579999999999876 54 7
Q ss_pred EEEEEECCeeCCCCceEE---------ecc------ceEEEccCccCC-CeEEEEEEEeCCee
Q psy574 130 TVHWKRLGSAMPEDRMSV---------LPS------RSLQLSDVRLED-AGEYVCEAENAVGK 176 (977)
Q Consensus 130 ~i~W~k~~~~l~~~~~~~---------~~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g~ 176 (977)
.|.|+|++..+..+.... ..+ ..|.|.....+| .|.|+|.|.|....
T Consensus 183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 999999998886542211 022 237777777654 77899999997643
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-16 Score=156.92 Aligned_cols=155 Identities=12% Similarity=0.194 Sum_probs=109.0
Q ss_pred EeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee---
Q psy574 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM--- 187 (977)
Q Consensus 111 v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~--- 187 (977)
+.+|++++|.|.+ |.+.|.|+|++..+... ...+++|.|.+++.+|+|.|+|.+.+... ..+.|.|..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~~~ 85 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMGSA 85 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC---
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEecc
Confidence 3589999999998 77899999999887532 12457899999999999999999755321 224444430
Q ss_pred ----------------------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 188 ----------------------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 188 ----------------------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
++.+...| .....+|++++|.|. +.|.+.+.|++++..+.... ....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~--~~~~ 160 (204)
T 1sy6_A 86 DDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDE--DDKN 160 (204)
T ss_dssp ---------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCT--TCTT
T ss_pred ccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCcc--CCce
Confidence 12222222 223339999999998 78999999999998764321 1111
Q ss_pred EEEEEccCCceEEEEeec-ccCCCCeEEEEEEEcCCCce-eEEEEEEE
Q psy574 240 IQAEITSDGMNLLKIQNV-SRTAAPLIILCLGVNAAGSD-LARASLTV 285 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v-~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V 285 (977)
+.. . .+ .|.|.++ +.+|+|.|+ |.|.|..|.. +....|.+
T Consensus 161 ~~~-~--~~--~L~I~~v~~~~D~G~Y~-C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 161 IGS-D--ED--HLSLKEFSELEQSGYYV-CYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EEE-E--TT--EEEETTCCHHHHCEEEE-EEETTSCGGGSSCEEEEEE
T ss_pred Eec-C--CC--EEEEeeCCccccCEEEE-EEeccCCCCceeEEEEEEE
Confidence 221 1 34 9999999 999999999 9999999963 44455544
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=140.47 Aligned_cols=116 Identities=27% Similarity=0.380 Sum_probs=100.5
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc--eEEE-EecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA--LINM-TVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--~~~~-~~~~~~~~ 700 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|+....+|.|.+|+|+|+..+... .... .+....++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2edx_A 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS 80 (134)
T ss_dssp CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSE
T ss_pred CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccE
Confidence 57889999999999999998999999999899999999999976678999999999998865221 1111 23577899
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 81 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 119 (134)
T 2edx_A 81 WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119 (134)
T ss_dssp EEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECCCCS
T ss_pred EEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecCCCC
Confidence 999999999999999999999999999999999998765
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=160.80 Aligned_cols=168 Identities=18% Similarity=0.281 Sum_probs=118.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---e-ecCC---------Cc-eEEEec----CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---I-DFEN---------SK-RLRLVD----GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l-~~~~---------~~-r~~~~~----~g~L~I 65 (977)
..+...|..+.+.+|++++|.|.+ .+ +.+.|.|+| .+.. + .... .. |+.+.. +.+|.|
T Consensus 28 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 105 (270)
T 3qib_D 28 MKVIQTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI 105 (270)
T ss_dssp CCCEEECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred eeEEeCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence 456777888999999999999998 43 778999998 2211 1 0000 11 666653 457999
Q ss_pred cCCCCCCCeEEEEEEEecCc---eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEecc-cCce-EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGG-DAVL-TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g---~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W 133 (977)
.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .+....+.+|+.++|.|.+.| .|.+ .+.|
T Consensus 106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 185 (270)
T 3qib_D 106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 185 (270)
T ss_dssp SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEE
Confidence 99999999999999986421 1223445778875 555443 344445567999999999987 6656 8999
Q ss_pred EECCeeCCCCceEE---------------eccceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 134 KRLGSAMPEDRMSV---------------LPSRSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 134 ~k~~~~l~~~~~~~---------------~~~~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|+|..+..+.... .-...|.|.....+| .|.|+|.|.|...
T Consensus 186 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l 243 (270)
T 3qib_D 186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 243 (270)
T ss_dssp EETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence 99998886532111 112457788887777 9999999998754
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=159.46 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee----c-----------CCCceEEEec-----CcE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID----F-----------ENSKRLRLVD-----GTN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~----~-----------~~~~r~~~~~-----~g~ 62 (977)
....+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. . ...+|+.+.. +.+
T Consensus 8 ~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 86 (261)
T 2xqy_G 8 VQLQQPGAELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVY 86 (261)
T ss_dssp CEEECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred eeEECCCCEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEE
Confidence 34456888999999999999998 5555 6789999863 2211 0 1135777653 247
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWK 134 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~ 134 (977)
|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+
T Consensus 87 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~ 166 (261)
T 2xqy_G 87 IQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN 166 (261)
T ss_dssp EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred EEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence 999999999999999999986431 122345788874 4555443323346789999999999774 766 99999
Q ss_pred ECCeeCCC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 135 RLGSAMPE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 135 k~~~~l~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+++..+.. ... .......|.|..+..+| |.|+|.|.|....
T Consensus 167 k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 167 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp GGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 99876531 111 11123579999988888 9999999997654
|
| >4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=148.09 Aligned_cols=183 Identities=12% Similarity=0.050 Sum_probs=139.8
Q ss_pred EEEEEeeEeCCCeEEEEEEecC-CCccceEEEEEEe----cCCCCCceEEEEeecCccceEEECC-CCCCcEEEEEEEEe
Q psy574 547 IELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSRG----LDPPASVAMLTVLHAGEASGFLVTG-LAHYSRYEFFLVPF 620 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~-~~~i~~Y~v~y~~----~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~t~Y~~~V~a~ 620 (977)
|.++++...+-. ..|+|+++. ......|.|+|+. ......|...........+.+.|++ |..+..|.++|+|.
T Consensus 10 P~nv~~~s~n~~-~iL~W~p~~~~~~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~~RVrA~ 88 (206)
T 4doh_B 10 PQQLSVLSTNMK-HLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRAT 88 (206)
T ss_dssp CCCCEEEEETTE-EEEECCCCCCSSSCCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEEEEEEEE
T ss_pred CCeeEEEEeCCE-EEEEECCCCCCCCCEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEEEEEEEE
Confidence 367888888877 799999993 3345789999995 2235789886666556778999995 87899999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceE-EEEecCCcC
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALI-NMTVSASTP 699 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~-~~~~~~~~~ 699 (977)
+..+.+.++....|.+....-.+||. +.+. ....+|.|.|.+| +.+..|+|.|++.+..... ...+....+
T Consensus 89 ~~~~~S~w~~~~~f~~~~~t~i~PP~-v~v~-~~~~~i~V~~~~p------~~~l~Y~v~y~~~~~~~~~~~~~~~~~~~ 160 (206)
T 4doh_B 89 LGSQTSAWSILKHPFNRQSTILTRPG-MEIT-KDGFHLVIELEDL------GPQFEFLVAYWRREPGAEEHVKMVRSGGI 160 (206)
T ss_dssp ETTEECCCEECSSCBCGGGCBCCCCC-EEEE-EETTEEEEEECCC------CTTCEEEEEEEESSSSCCCEEEEECCSSS
T ss_pred cCCCccCccccccccchhhcccCCCe-EEEE-eCCCEEEEEecCC------CCcEEEEEEEEEcCCCceeEEeEEccCCe
Confidence 99999888776666554333334664 6666 4678999999987 5678999999987633322 233455568
Q ss_pred eEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCC
Q psy574 700 TLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSG 738 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~ 738 (977)
.++|.+|+|++.|.|+|+|++. .|.|.+|.+..+.|...
T Consensus 161 ~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~~~ 201 (206)
T 4doh_B 161 PVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGE 201 (206)
T ss_dssp EEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC---
T ss_pred EEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEccch
Confidence 8999999999999999999986 48999999999988643
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=162.94 Aligned_cols=171 Identities=13% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
.+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++. .+ ..+++... .+.+|.|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 3455666778889999999999999888878899999642 11 02233322 223799999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCC-CC-eEEEEEcCeeeeec--
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSP-PP-STFWMLEGNRSLIY-- 232 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~-~i~W~~~g~~~~~~-- 232 (977)
+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.+ .+ .+.|+|+|..+...
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999987653 22334566664 67777655555455799999999998854 43 79999999765321
Q ss_pred -----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 233 -----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 233 -----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.....+.+... +.|.|..++.+|.|.|+ |.|.|....
T Consensus 183 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~ 224 (233)
T 3bqu_C 183 NSWTDQDSKDSTYSMS------STLTLTKDEYERHNSYT-CEATHKTST 224 (233)
T ss_dssp EEECCCCTTTCCEEEE------EEEEEEHHHHHTCCCEE-EEEEEC---
T ss_pred EecCCccCCCCCEEEE------EEEEECHHHhCCCCCEE-EEEEeCCCC
Confidence 00011222222 37999999999999999 999997543
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=144.01 Aligned_cols=115 Identities=29% Similarity=0.392 Sum_probs=100.3
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc-eEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~ 702 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|..+..||.|.+|+|+|+..+... .....+.++.++++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T 1x5h_A 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL 80 (132)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEE
T ss_pred CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEE
Confidence 57889999999999999998999999998899999999999964448999999999998865222 22233667889999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++.++|...
T Consensus 81 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~ 116 (132)
T 1x5h_A 81 IEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES 116 (132)
T ss_dssp EECCCSSCEEEEECEEEETTEEEEECCCEEEECCSS
T ss_pred eCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCcc
Confidence 999999999999999999999999999999999775
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=157.72 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=123.5
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE----------------CCeeCCC----CceEEec----cceEEEc
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----------------LGSAMPE----DRMSVLP----SRSLQLS 156 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----------------~~~~l~~----~~~~~~~----~~~L~I~ 156 (977)
.+...|..+.+.+|++++|.|.+.+.+.+.|.|+| ++..... +|+.+.. +.+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 35566778899999999999999988999999999 2222211 4555442 3479999
Q ss_pred cCccCCCeEEEEEEEeCCe----eEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecCCCC--eEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVG----KISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGSPPP--STFWM 223 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~ 223 (977)
+++.+|+|.|+|.+.+..+ .....+.|.|.. +|.+.. .+....+.+|+.++|.|.+.+.+++ .+.|+
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 162 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 162 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence 9999999999999987643 233456777763 555543 4555567779999999999987655 89999
Q ss_pred EcCeeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCcee
Q psy574 224 LEGNRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSDL 278 (977)
Q Consensus 224 ~~g~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~ 278 (977)
++|..+...... ..+.+.+. +.|.|...+.+| .|.|+ |.|.|......
T Consensus 163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~~g~Yt-C~v~~~~~~~~ 222 (246)
T 4dzb_B 163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 222 (246)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEE------EEEEECHHHhccCCCeEE-EEEEecCCCCc
Confidence 999876321000 12233332 268999998888 99999 99999866543
|
| >3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=146.13 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=181.1
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLT 473 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~ 473 (977)
.....||.++.+...+...+.|+|++|.. ....-...|.++++..... .|..... ......+|.
T Consensus 9 ~~~~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~-----------~w~~~~t----~~~~~~~L~ 73 (317)
T 3qt2_A 9 KISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKED-----------DYETRIT----ESKAVTILH 73 (317)
T ss_dssp CCCCCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCE-----------EEEESSS----EEEEECCCT
T ss_pred ccccCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCc-----------ccEeecc----ccccccccC
Confidence 35678999999998888899999999654 2223357899998776543 7886542 233466676
Q ss_pred CCCeEEEEEEEEcCCCCCC-CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 474 VGLTYTFLVRALNSHGLSA-PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~-~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.+ |.++|++.+..|.+. +|.++....- .+ | |. ++..+.+|.+
T Consensus 74 ~~--~~~rVrt~~~~~~s~~~S~w~~~~~~---~~---------------~-----G~------------p~~~p~nlsC 116 (317)
T 3qt2_A 74 MG--FSASVRTILQNDHSLLASSWASAELH---AP---------------P-----GS------------PGTSIVNLTC 116 (317)
T ss_dssp TC--EEEEEEEEEECSSCEEECCCEEEEEC---CC---------------S-----CB------------GGGSCEEEEE
T ss_pred CC--eEEEEEEEECCCCCcccccccccccc---CC---------------C-----CC------------CCCcceeeEE
Confidence 54 999999977655433 5666543322 11 1 11 2334688998
Q ss_pred eEeC-----------CCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEE-eecC--ccceEEECCCC----CCcEE
Q psy574 553 KPMT-----------STSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTV-LHAG--EASGFLVTGLA----HYSRY 613 (977)
Q Consensus 553 ~~~~-----------~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~-~~~~--~~~~~~i~~L~----p~t~Y 613 (977)
..-+ ...++++|++. .....+.|.++|+..+ .+..+.. .... ....+.+.... .+..|
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~CtW~pG~~~~~~t~Y~L~y~~~~---~~~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~ 193 (317)
T 3qt2_A 117 TTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGS---WTEECQEYSMDTLGRNIACWFPRTFILSKGRDWL 193 (317)
T ss_dssp EEEEEECSCSSSCCEEEEEEEEEECCTTCCTTCEEEEEEEETT---EEEECCCEEECTTSCEEEEEESSCSCCTTCCSEE
T ss_pred EEccccccccccccccceEEEEeeCCCCCCCCeeEEEEEEeCC---CCeeCCccccCCCcceeEEEeCCccccccCcEEE
Confidence 8777 58999999997 3344568999998754 2333221 1112 23477777653 46789
Q ss_pred EEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE
Q psy574 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693 (977)
Q Consensus 614 ~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~ 693 (977)
.|.|.+.+..+.- .+....+.....+-+.||.++++... .+.+.|+|++|... ....-+.|+|+|+..+........
T Consensus 194 ~i~V~gss~~~~i-~s~~~~~~l~~iVkp~PP~nL~v~~~-~~~l~v~W~~P~~~-~~~~~L~Yevryr~~~~~~~~~~~ 270 (317)
T 3qt2_A 194 AVLVNGSSKHSAI-RPFDQLFALHAIDQINPPLNVTAEIE-GTRMSIQWEKPVSA-FPIHCFDYEVKIHNTRNGYLQIEK 270 (317)
T ss_dssp EEEEEEECTTSCB-CCEEEEEEHHHHBCCCCCEEEEEEEE-TTEEEEEEECCSSS-SCGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCccc-cccceEEEHHHcCcCCCCceeEEEEe-CCcEEEEECCCCcc-cccCceEEEEEEEeCCCCcceEEE
Confidence 9999865433221 12224455555555569999998854 57999999998532 223457899999985533233333
Q ss_pred ecCCcCeEEecCCCCCceEEEEEEEEcCC-----C-cCCCCCceEE
Q psy574 694 VSASTPTLLLTNLSAGIRYSVSLAATNRA-----G-TGPYSRPALL 733 (977)
Q Consensus 694 ~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~-----G-~g~~S~~~~~ 733 (977)
+ ..+++.+ +|.|++.|.|+|||.... | .|.||+++.+
T Consensus 271 ~--~~~~~~l-~l~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~ 313 (317)
T 3qt2_A 271 L--MTNAFIS-IIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYV 313 (317)
T ss_dssp E--SSSEEEE-ECCTTCCEEEEEEEEECTTTSSCCCCCCCCCCEEE
T ss_pred E--eeeEEEe-ecCCCCEEEEEEEEeecCCCCCCCCcCCCCCCEEE
Confidence 3 3466666 499999999999999542 3 4678888876
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-15 Score=155.71 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=120.3
Q ss_pred eCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
..|....+.+|++++|.|.+.+. +.+.+.|+|+. ... ..+++.... ..+|.|.+++.+|+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 34556789999999999999876 78899999953 111 123554432 23799999999999
Q ss_pred eEEEEEEEeCCe---eEEEEEEEEEeeCCe--------------------EEecCCCcEEeeCCeEEEEEEEecCC--CC
Q psy574 164 GEYVCEAENAVG---KISASATLTVQMAPI--------------------VRERPSDLRLEVGRDAVFLCGIEGSP--PP 218 (977)
Q Consensus 164 G~Y~C~a~n~~g---~~~~~~~L~V~~~p~--------------------~~~~p~~~~v~~G~~v~L~C~~~g~p--~~ 218 (977)
|.|+|.+.+..+ .....+.|.|..++. ....+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 999999998653 233556788876541 23334455689999999999999877 67
Q ss_pred eEEEEEc--Ceeee----ec--------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 219 STFWMLE--GNRSL----IY--------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 219 ~i~W~~~--g~~~~----~~--------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.+.|+|+ +..+. .. .....+|+.+.... .+...|+|.+++.+|+|.|. |.|.|..
T Consensus 167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~~~ 236 (256)
T 3ux9_B 167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY-CARYIDF 236 (256)
T ss_dssp EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEEEETT
T ss_pred EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEE-EEEEcCC
Confidence 9999997 32221 11 01123477766542 23467999999999999999 9999864
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=148.22 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-------------CCceEEe-ccceEEEccCccCCCeEEEEEEEeC
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~-------------~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+.+.+|++|+|.|.+.+ |.+.|.|+|++..+. .+|..+. .+++|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 457889999999999854 888999999986431 1344443 5689999999999999999999988
Q ss_pred CeeEEEEEEEEEeeCC---eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 174 VGKISASATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 174 ~g~~~~~~~L~V~~~p---~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
.+ ...+.|.|..++ .+..... ..+|.|.+.+.|.+.+.|++++..+... ...
T Consensus 83 ~~--~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~---------------~~~ 137 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSL---------------RQK 137 (171)
T ss_dssp CS--CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEE---------------SSS
T ss_pred CC--cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCC---------------cce
Confidence 77 677888888653 3332221 1379999999999999999999876411 111
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
.|.+. ...|.|.|+ |.|.|..+.....+.|
T Consensus 138 ~l~~~--~~~~~g~Y~-C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 138 TMSYQ--WTNLRAPFK-CKAVNRVSQESEMEVV 167 (171)
T ss_dssp EEEEE--CSCCSSCEE-EEEEETTEEEEEEECC
T ss_pred EEEEe--ccCCCceEE-EEEEcccCcccceeEE
Confidence 34443 377899999 9999999987766554
|
| >1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=153.12 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=132.9
Q ss_pred EEEEEeeEeCCCeEEEEEEec-C-CCccceEEEEEEecCCCCCceEEEEe-----ecCccceEEE--CCCCCCcEEEEEE
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-N-TDYIEGVYIYSRGLDPPASVAMLTVL-----HAGEASGFLV--TGLAHYSRYEFFL 617 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~-~~~i~~Y~v~y~~~~~~~~~~~~~~~-----~~~~~~~~~i--~~L~p~t~Y~~~V 617 (977)
+.++.+...+...+.++|+++ . +....+|.|.|+..+ ..|..+... .......+.| .++..++.|.|+|
T Consensus 24 P~nl~C~~~~~~~l~C~W~~~~~~~~~~~~y~l~y~~~~--~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~V 101 (227)
T 1eer_B 24 PEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLED--EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRV 101 (227)
T ss_dssp TTSCEEEBSSSSCCEEEEEESCCSSCCTTSEEEEEEETT--SCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEEE
T ss_pred CcCCeEECCCCCEEEEEecCCCCCCCCCccEEEEEEcCC--CCceeccceeccCCCCCceEEEEeCCCcceeeEEEEEEE
Confidence 357889998999999999999 3 336789999998764 234433211 1112233444 4788999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEec-CcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEec
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN-ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVS 695 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~-~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~ 695 (977)
.|.+..+ .....+.+.+.+++.||.++++...+ .+++.|+|++|.....++ ++.|+|+|+..+.. ......+.
T Consensus 102 ~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~-~l~Yev~y~~~~~~~w~~~~~~~ 176 (227)
T 1eer_B 102 TAASGAP----RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTS-HIRYEVDVSAGQGAGSVQRVEIL 176 (227)
T ss_dssp EETTSCE----EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGG-GEEEEEEEECCSSSCCCCEEEEC
T ss_pred EecCCCc----cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCccccc-ceEEEEEEEcCCCCCcEEEEEEe
Confidence 9975333 22345667776666799999998764 789999999996333334 88999999986533 32223445
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcC----CCc-CCCCCceEEeecCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNR----AGT-GPYSRPALLSLTSG 738 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~----~G~-g~~S~~~~~~t~~~ 738 (977)
...+++.|.+|+|++.|.|+|||.+. .|. |.||+++.+.|+..
T Consensus 177 ~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~~d 224 (227)
T 1eer_B 177 EGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSD 224 (227)
T ss_dssp TTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC---
T ss_pred cCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECccc
Confidence 67889999999999999999999975 243 99999999998543
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.96 Aligned_cols=173 Identities=12% Similarity=0.202 Sum_probs=124.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC------ceEEEEEECC--eeC-------------CCCceEEec---cceEEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA------VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQL 155 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p------~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I 155 (977)
+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 4566677888999999999999998877 6889999952 211 134555542 348999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------------------eE-EecCCCcEEeeCCeEEEEEEEecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------------------IV-RERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------------------~~-~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+++.+|+|.|.|.+.+..+. ....+.|.|..+| .+ ...+....+.+|++++|.|.+.+.
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~ 165 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY 165 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence 999999999999999987543 2344678887653 22 223444578999999999999988
Q ss_pred CC--CeEEEEEcC--ee--eeec--CC--------CccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 216 PP--PSTFWMLEG--NR--SLIY--PG--------DRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 216 p~--~~i~W~~~g--~~--~~~~--~~--------~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+. +.+.|+|+. .. ++.. .. ...+++.+... ..+...|.|.+++.+|+|.|. |.+.|.
T Consensus 166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~ 239 (264)
T 2gjj_A 166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYY-CVRSGN 239 (264)
T ss_dssp CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEEECS
T ss_pred ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEE-EEEecC
Confidence 64 799999974 22 1110 10 11346665532 234469999999999999999 999995
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=158.39 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=115.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC------C------------CCceEEe-----ccceE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM------P------------EDRMSVL-----PSRSL 153 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l------~------------~~~~~~~-----~~~~L 153 (977)
+|.+...|....+.+|++++|.|.+.+.+.+.+.|+|.. ... . .++.... .+.+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 356667788889999999999999988888899999932 111 0 0011111 23469
Q ss_pred EEccCccCCCeEEEEEEEeCCe---eEEEEEEEEEee-----------------CCeEEecCCCcEEeeCCeEEEEEEEe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG---KISASATLTVQM-----------------APIVRERPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~-----------------~p~~~~~p~~~~v~~G~~v~L~C~~~ 213 (977)
.|.+++.+|+|.|+|.+.|..+ .....+.|.|.. .+.+...|....+.+|++++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999998765 344557788875 35667778888999999999999998
Q ss_pred cC-CCCeEEEEEcCe--ee--eec-----CCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 214 GS-PPPSTFWMLEGN--RS--LIY-----PGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 214 g~-p~~~i~W~~~g~--~~--~~~-----~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+. +.+.+.|+|++. .. ... .....+++.+... ..+...|+|.+++.+|+|.|. |.+.+.
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~~ 231 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYF-CALGES 231 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEE-EEEESC
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEE-EEEeCc
Confidence 75 788999999642 11 100 0112355655431 123357999999999999999 999753
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=139.78 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=96.4
Q ss_pred CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--------ceEEEEecCCcCe
Q psy574 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--------ALINMTVSASTPT 700 (977)
Q Consensus 629 s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--------~~~~~~~~~~~~~ 700 (977)
|..+.++|.+++|+.+|.++++...++++|.|+|++|+....||.|++|+|+|+..+.. ......+.++.++
T Consensus 2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1uen_A 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTH 81 (125)
T ss_dssp CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSE
T ss_pred CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccE
Confidence 45688999999998899999999999999999999996556789999999999875421 1234556778899
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 82 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 120 (125)
T 1uen_A 82 GMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120 (125)
T ss_dssp EEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCC
T ss_pred EEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECCCCC
Confidence 999999999999999999999999999999999998765
|
| >4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=147.01 Aligned_cols=187 Identities=11% Similarity=0.010 Sum_probs=143.3
Q ss_pred EEEEEeeEeCCCeEEEEEEecC--CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC--CCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEILN--TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA--HYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~--~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~~~V~a~n~ 622 (977)
|+++++...+-..+ |+|+++. +.....|.|+|+..+ ...|...........+.+.|+++. ++..|.++|+|...
T Consensus 12 P~nv~~~s~n~~~i-L~W~p~~~~~~~~~~Y~Vqy~~~~-~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~A~~g 89 (221)
T 4doh_R 12 PANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYG-QKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIWG 89 (221)
T ss_dssp CEEEEEEEETTEEE-EEEECCCCSSCCCCEEEEEEEETT-SCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEEEESS
T ss_pred CceeEEEEECCcEE-EEEcCCCCCCCCCeEEEEEEEECC-CCCceecccccCCCCCEEeCCCccccCCCCEEEEEEEEcC
Confidence 47999999888775 9999983 356889999999765 467876544444567889999975 56789999999998
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCC--CCCee---------eeEEEEEEEecCCcceEE
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVG--THNGV---------IRTYQIIVGGGNNSALIN 691 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~--~~ng~---------i~~Y~v~~~~~~~~~~~~ 691 (977)
.+.+.++....|.+......+||. +.+.. .+++|.|.|.+|... ..+|. ...|+|.|++++......
T Consensus 90 ~~~S~w~~~~~F~p~~~t~igPP~-v~v~~-~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~~~~~~ 167 (221)
T 4doh_R 90 TKCSKWAESGRFYPFLETQIGPPE-VALTT-DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWS 167 (221)
T ss_dssp SCBCCCEECCCBCHHHHCBCCCCE-EEEEC-CSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTTTEEEE
T ss_pred CcccCCEecCceechhhCccCCCE-EEEEE-CCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCCCcEEE
Confidence 888888777777766555566885 88774 668999999998532 12341 468999999865333222
Q ss_pred EEecCCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCCC
Q psy574 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 692 ~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~~ 739 (977)
.. .....+.|.+|+|++.|.|+|+|++. .|.|.+|.++.++|.+..
T Consensus 168 ~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d~ 215 (221)
T 4doh_R 168 QC--VTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQ 215 (221)
T ss_dssp EE--ECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC-
T ss_pred Ee--ecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCCc
Confidence 22 24578999999999999999999985 799999999999987654
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-15 Score=151.29 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=112.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e-e----------cCCCceEEEec-----CcEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I-D----------FENSKRLRLVD-----GTNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l-~----------~~~~~r~~~~~-----~g~L~I~ 66 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. .. + . ....+|+.+.. +.+|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (215)
T 1c5d_H 5 LESGPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEES
T ss_pred EcCCCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEEC
Confidence 35778999999999999998 5543 5789999852 21 1 0 01246777653 2379999
Q ss_pred CCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 67 DSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++.
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 163 (215)
T 1c5d_H 84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGAL 163 (215)
T ss_dssp SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTT
T ss_pred CCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCc
Confidence 99999999999999886422 122346788873 4555543323345789999999999876 877 999999987
Q ss_pred eCCCCce-EEeccceEE----EccCccCCCeEEEEEEEeCCeeE
Q psy574 139 AMPEDRM-SVLPSRSLQ----LSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 139 ~l~~~~~-~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+..... ....++.+. +.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 164 SSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp CCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred cCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence 5432110 011112211 22444456 99999999988764
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=139.19 Aligned_cols=237 Identities=18% Similarity=0.204 Sum_probs=165.6
Q ss_pred eEEeCCCceEEeCCCeEEEEEEe-cccC---ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 101 YIIRGPKDTTVSASSIIVFECSV-GGDA---VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v-~g~p---~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+...|....+..|+.++|.|.+ .|.| ...++|+||+..+.. ....|.|..+...|+|.|+|.+.+..|.
T Consensus 4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG------aT~tLti~s~t~sdSG~YqCvVTDa~Gc 77 (304)
T 3shs_A 4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN------NTATLTVADATSENAGSYKVTVQDTDTM 77 (304)
T ss_dssp EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC------CcceEEeeeccccCCeEEEEEEEECCCC
Confidence 34455777788999999999998 5566 568999999988764 3457999999999999999999998887
Q ss_pred EEEEEEEEEeeC--CeEEe-cCCCcEEeeCCeEEEEEEE--ec-CC-----CCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 177 ISASATLTVQMA--PIVRE-RPSDLRLEVGRDAVFLCGI--EG-SP-----PPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 177 ~~~~~~L~V~~~--p~~~~-~p~~~~v~~G~~v~L~C~~--~g-~p-----~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
...+..+.|... +.+.. .|....+..|..+.|.+.+ .| .+ ..++.|+|++..+.
T Consensus 78 s~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is--------------- 142 (304)
T 3shs_A 78 TSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------------- 142 (304)
T ss_dssp CEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE---------------
T ss_pred eeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc---------------
Confidence 544444444432 23322 3555566678899999987 43 44 45899999997652
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc------
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG------ 319 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~------ 319 (977)
+...|++......++|.|. |.+.|..+..-.++.+.|.... .++-..-.....+..|+.+.|.-.+..
T Consensus 143 --gAq~lT~sS~TateaG~Yt-V~VTn~~~~c~~s~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (304)
T 3shs_A 143 --TTQDITIQEFTADKNGVYT-VKVWGESEDSAASASTKIMLAT---MNVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216 (304)
T ss_dssp --SSSEEEECSCCGGGCEEEE-EEEESSSGGGCEEEEEEEEECE---EEEEECCCSEEEEETTSCEEECCEEEEECCSCC
T ss_pred --CccccceeeEEecCCeEEE-EEEEcCCCCcccccceEEEEEc---cccchhheEeehhhcCcEEEEEEEEeeccccCC
Confidence 3337888888899999999 9999998755444433333210 112122233456778888888666553
Q ss_pred --Cc----eEEEEEC--CEEc----CC-----CCcEEEecCceEEEeccCCCCCeEEEEEEE
Q psy574 320 --EG----SVQWWRG--EREV----GS-----GPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 320 --~p----~i~W~~~--g~~l----~~-----~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
.| .+.|+.. |... .. -..+.+.+++.|.-......|...|.|.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278 (304)
T ss_dssp TTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred CCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence 22 4668643 3211 11 156778889999888899999999999986
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=157.59 Aligned_cols=255 Identities=16% Similarity=0.202 Sum_probs=110.4
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
..|.+..|.+|+++.|.|.+.-.....+.|.-. ++... ... .....|.|.++..+ |.|+|.+.......++.+
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g---~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v 78 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG---NNRKVYELSNVQED--SQPMCYSNCPDGQSTAKT 78 (291)
T ss_dssp EECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSC---SSEEEEEEESCCSC--CCCEEEEECSSCEEEEEC
T ss_pred EeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCC---CceEEEEEEecccC--CeEEEEEEcCCccEEEEE
Confidence 346677899999999999996333334888642 11111 110 02235788888843 469999976544677888
Q ss_pred EEEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeec
Q psy574 182 TLTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV 257 (977)
Q Consensus 182 ~L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v 257 (977)
.|.|..+|.. .+.+....+.+|+.++|.|.+.+..+. +|.|+|++..+...... . .....+|.+...
T Consensus 79 ~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--~-------~~~~~~l~~~~~ 149 (291)
T 1mq8_A 79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--G-------EPAEVTTTVLVR 149 (291)
T ss_dssp EEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--B-------TTEEEEEECCCS
T ss_pred EEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--C-------CCceEEEEeeee
Confidence 9999977753 333444568899999999999875443 58999999776422100 0 012236777766
Q ss_pred ccCCCCeEEEEEEEcCCCc--------eeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-Cc----eEE
Q psy574 258 SRTAAPLIILCLGVNAAGS--------DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EG----SVQ 324 (977)
Q Consensus 258 ~~~d~G~Y~~C~a~n~~g~--------~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~p----~i~ 324 (977)
..+|.+.|+ |+|.|..+. .+....|.|...+.. .+.+. .| ..+..|+.++|.|.+.+ .| .++
T Consensus 150 ~~D~g~~~~-C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~-~~~~~-~p--~~l~eG~~v~l~C~~~g~~P~~~~~v~ 224 (291)
T 1mq8_A 150 RDHHGANFS-CRTELDLRPQGLELFENTSAPYQLQTFVLPAT-PPQLV-SP--RVLEVDTQGTVVCSLDGLFPVSEAQVH 224 (291)
T ss_dssp SSCSSCEEE-EEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred eccCCceEE-EEEEecCCccCCccccccccceEEEEEecCCC-Cceec-CC--cCccCCCeEEEEEEcCCCCCCcccEEE
Confidence 667777999 999987652 234456777763111 11221 12 25778999999999999 33 599
Q ss_pred EEECCEEcCCCCcEEEecCceEEEecc---CCC--CCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 325 WWRGEREVGSGPRVNVTGDGSLVLTDV---TKE--DSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 325 W~~~g~~l~~~~~~~~~~~~sl~I~~v---~~~--d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
|+++|..+.... . .....+.+... ... +.+.|+|.|.+.....+....|.|..
T Consensus 225 w~~~g~~l~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 225 LALGDQRLNPTV--T-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp -------------------------------------------------------------
T ss_pred EEECCEecCcee--e-ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 999999876431 1 12223333333 233 35677788887544455566666654
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-16 Score=160.02 Aligned_cols=175 Identities=20% Similarity=0.245 Sum_probs=121.4
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC-ce-EEEEEECC--eeC-------------CCCceEEe---ccceEEEccCc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA-VL-TVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVR 159 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~-~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~ 159 (977)
+.+.. |....+.+|++++|.|.+.+.+ .+ .|.|+|++ ..+ ..+++... .+.+|.|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33444 7788899999999999997754 34 69999973 221 12455543 23489999999
Q ss_pred cCCCeEEEEEEEeCCe---eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeee
Q psy574 160 LEDAGEYVCEAENAVG---KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSL 230 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g---~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~ 230 (977)
.+|+|.|+|.+.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+.+++ .+.|+|+|..+.
T Consensus 100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 179 (234)
T 2j6e_L 100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK 179 (234)
T ss_dssp STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence 9999999999999877 23345677774 45555554444444468899999999886443 899999998763
Q ss_pred ecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 231 IYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.. ..........++ .+.|.|..+..+|.|.|+ |.|.|..+....+
T Consensus 180 ~~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 180 AG----VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYS-CQVTHEGSTVEKT 228 (234)
T ss_dssp SS----EEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEE-EEEEBTTBCCCEE
T ss_pred CC----ccccCceECCCCCEEEEEEEEECHHHcCCCCeEE-EEEEeCCCceEEe
Confidence 11 000000001111 247999999999999999 9999988764443
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=148.93 Aligned_cols=169 Identities=16% Similarity=0.243 Sum_probs=119.0
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567899999999999997765 4789999953 11 1 124665543 248999999
Q ss_pred ccCCCeEEEEEEEeCCe------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEE-c
Q psy574 159 RLEDAGEYVCEAENAVG------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWML-E 225 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~-~ 225 (977)
+.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++ +
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN 166 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence 99999999999998652 122446788873 4555533223345789999999999886 776 999999 8
Q ss_pred Ceeeee---cCC-CccccEEEEEccCCceEEEEeeccc--CCCCeEEEEEEEcCCCceeEEE
Q psy574 226 GNRSLI---YPG-DRVDNIQAEITSDGMNLLKIQNVSR--TAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 226 g~~~~~---~~~-~~~~~~~~~~~~~g~s~L~I~~v~~--~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
|..+.. ... ...+.+.+. +.|.|..... +|.|.|+ |.|.|..+......
T Consensus 167 g~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~~d~g~y~-C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 167 NSDISSTRGFPSVLRGGKYAAT------SQVLLPSKDVAQGTNEHVV-CKVQHPNGNKEKDV 221 (223)
T ss_dssp SCBCSCEEECCCEEETTEEEEE------EEEEEECTTTTSTTCCEEE-EEEECTTCCEEEEE
T ss_pred CCccceeEECCccccCCeEEEE------EEEEEcHHHhccCCCCEEE-EEEEeCCCCCcccc
Confidence 876531 000 011233332 3788888876 7899999 99999988765443
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=149.65 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=119.6
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4567899999999999998765 5789999863 11 1 124666553 248999999
Q ss_pred ccCCCeEEEEEEEeCCee---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CC--CeEEEEEcCee
Q psy574 159 RLEDAGEYVCEAENAVGK---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PP--PSTFWMLEGNR 228 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~--~~i~W~~~g~~ 228 (977)
+.+|+|.|.|.+.+..+. ....+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+. |. +.+.|++++..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~ 165 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD 165 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence 999999999999987543 22346788873 45665554 4456789999999999886 65 68999999876
Q ss_pred eeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 229 SLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 229 ~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
+..... ...+.+.+. +.|.|......|.|.|+ |.|.|..+...
T Consensus 166 ~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~yt-C~v~n~~~~~~ 212 (220)
T 2fbj_H 166 ITTVNFPPALASGGRYTMS------NQLTLPAVECPEGESVK-CSVQHDSNPVQ 212 (220)
T ss_dssp CEEEECCCEECSSSCEEEE------EEEEECGGGSCTTCEEE-EEEEETTSCCE
T ss_pred cceEecCceECCCCCEEEE------EEEEECHHHcCCCCeEE-EEEEcCCCceE
Confidence 421100 011223322 26899999999999999 99999988754
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=156.89 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=128.5
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 35577899999999999998766 5789999963 111 024444432 35799999
Q ss_pred CccCCCeEEEEEEEeCC-e--e--EEEEEEEEEee----------------CCeEEecCCCcEEeeCCeEEEEEEEecCC
Q psy574 158 VRLEDAGEYVCEAENAV-G--K--ISASATLTVQM----------------APIVRERPSDLRLEVGRDAVFLCGIEGSP 216 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~-g--~--~~~~~~L~V~~----------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p 216 (977)
++.+|+|.|+|.+.|.. | . ....+.|.|.. ++.+...|....+.+|++++|.|.+.+.+
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999999874 1 1 22345788776 33455557777899999999999999887
Q ss_pred CC------eEEEEEcC--ee--eeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EE
Q psy574 217 PP------STFWMLEG--NR--SLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-AR 280 (977)
Q Consensus 217 ~~------~i~W~~~g--~~--~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~ 280 (977)
.+ .+.|+|+. .. ...... ....++..... .....|.|.+++.+|+|.|+ |.|.|...... .-
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~g 265 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS-GTDFTLTISSVQAEDLAVYY-CKQSYYHMYTFGSG 265 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEEEETTEEEECCC
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec-CCEEEEEECCCCHHHCEEEE-EEEccCCceEEcCC
Confidence 75 89999973 21 111110 11456766542 34468999999999999999 99998654332 23
Q ss_pred EEEEEEC
Q psy574 281 ASLTVSG 287 (977)
Q Consensus 281 ~~l~V~~ 287 (977)
..|.|+.
T Consensus 266 t~l~v~~ 272 (291)
T 2gki_A 266 TKLEIKH 272 (291)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 4677776
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.4e-15 Score=152.17 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=116.2
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4567889999999999998766 6789999863 211 124666543 358999999
Q ss_pred ccCCCeEEEEEEEeCCe-----e---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEE
Q psy574 159 RLEDAGEYVCEAENAVG-----K---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWML 224 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-----~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~ 224 (977)
+.+|+|.|+|.+.+..+ . ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 166 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS 166 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence 99999999999998754 1 22356788874 3555443222235689999999999886 766 999999
Q ss_pred cCeeeeec--CC--CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 225 EGNRSLIY--PG--DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 225 ~g~~~~~~--~~--~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
++..+... .. ...+.+... +.|.|..+..+| |.|+ |.|.|..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~ 215 (225)
T 1op3_H 167 GALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNT 215 (225)
T ss_dssp TSCCTTCEECCCEECTTSCEEEE------EEEEEEGGGTTC-CCCC-EEEEEGGGTE
T ss_pred CCCcCCeEecCceeCCCCCEEEE------EEEEEechhcCC-CcEE-EEEEcCCCCc
Confidence 98652110 00 012233222 379999998888 9999 9999976654
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=157.75 Aligned_cols=165 Identities=15% Similarity=0.260 Sum_probs=101.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.+ .+.|.|+|+. ..+. ....+|+.+.. +.+|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (257)
T 3bn9_D 5 VQSGGGLVKPGGSLRLSCAA-SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM 83 (257)
T ss_dssp EEECCEEECTTCEEEEEEEE-ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EccCCEEEcCCCcEEEEEEe-ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEE
Confidence 45678899999999999998 5554 5789999843 2110 11245777653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCc----------e--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----------T--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----------~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~ 128 (977)
.+++.+|+|.|.|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~ 163 (257)
T 3bn9_D 84 SSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 163 (257)
T ss_dssp ESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSS
T ss_pred CCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECC
Confidence 99999999999999998754 1 112345788874 4655543333346789999999999875 77
Q ss_pred e-EEEEEECCeeCCCC--ceEEec------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 129 L-TVHWKRLGSAMPED--RMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 129 ~-~i~W~k~~~~l~~~--~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+ .|.|+|++..+... ...... ...|.|.++..+| |.|+|.|.|....
T Consensus 164 pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 164 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp CCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred CcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 7 99999998764311 001111 2357788887778 9999999996543
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-15 Score=155.04 Aligned_cols=174 Identities=16% Similarity=0.253 Sum_probs=120.6
Q ss_pred CCCceEEeCCCeEEEEEEecc--cCceEEEEEECCe--e---C---------------CCCceEEecc-----ceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGS--A---M---------------PEDRMSVLPS-----RSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~--~---l---------------~~~~~~~~~~-----~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+ .+...+.|+|... . + ..+|+.+..+ .+|.|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 345678999999999999976 3456899998521 1 1 1245555432 3499999
Q ss_pred CccCCCeEEEEEEEeC----CeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCe
Q psy574 158 VRLEDAGEYVCEAENA----VGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGN 227 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~ 227 (977)
++.+|+|.|.|.+.+. .......+.|.|. .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999999876 2333445678776 5666665555556778999999999988 6666 899999986
Q ss_pred eeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 228 RSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 228 ~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+...... ..+.+.+. +.|.|...+.+| |.|+ |.|.|..+.......|.+.
T Consensus 166 ~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d-g~yt-C~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 166 SSGVHTFPAVLQSDLYTLS------SSVTVPSSTWPS-ETVT-CNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp CTTEEECCCEEETTEEEEE------EEEEEETTSTTT-SCCE-EEEEEGGGTEEEEEECCCC
T ss_pred ecceEeCCccccCCeEEEE------EEEEEcHHHCCC-ceEE-EEEEECCCCcceEEEecCc
Confidence 32110000 01334333 389999999999 9999 9999999887777777665
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=132.91 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=89.6
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
..+.+|+.+|.++++...+.++|.|+|++|+....||.|++|.|+|+..+. .......+.+..++++|.+|+|++.|
T Consensus 3 s~~~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 82 (114)
T 1x4y_A 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSY 82 (114)
T ss_dssp SSCCSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEE
T ss_pred CcccCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEE
Confidence 346788889999999999999999999999656789999999999987542 23333456677889999999999999
Q ss_pred EEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 713 SVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 83 ~~~V~A~n~~G~g~~S~~v~~~T~~~~ 109 (114)
T 1x4y_A 83 DIKMQCFNEGGESEFSNVMICETKARS 109 (114)
T ss_dssp EEEEEEECTTCCCCCCCCEEEECCCCC
T ss_pred EEEEEEEcCCccCCCcCCEEEEeCCCC
Confidence 999999999999999999999998765
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=152.63 Aligned_cols=168 Identities=20% Similarity=0.289 Sum_probs=116.0
Q ss_pred CCceEEeCCCeEEEEEEecccCc----eEEEEEECC--eeC-----------------CCCceEEec-----cceEEEcc
Q psy574 106 PKDTTVSASSIIVFECSVGGDAV----LTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~----~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~ 157 (977)
|....+.+|++++|.|.+.+.|. +.+.|+|+. ..+ ..+|+.+.. +.+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 56678999999999999988764 889999853 211 124555542 26899999
Q ss_pred CccCCCeEEEEEEEeCCe------e---EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEE
Q psy574 158 VRLEDAGEYVCEAENAVG------K---ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFW 222 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g------~---~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W 222 (977)
++.+|+|.|.|.+.+..| . ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W 166 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 166 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence 999999999999998754 1 1234788887 35666554434456789999999999886 777 9999
Q ss_pred EEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 223 MLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 223 ~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
++++..+...... ..+.+.. .+.|.|..+..+| |.|+ |.|.|..+......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~------~s~L~i~~~~~d~-g~Yt-C~~~n~~~~~~~~~ 220 (228)
T 3bae_H 167 NSGSLSSGVHTFPAVLQSDLYTL------SSSVTVTSSTWPS-ESIT-CNVAHPASSTKVDK 220 (228)
T ss_dssp GGGTCCTTEEEEEEEEETTEEEE------EEEEEEETTTTTT-SCCE-EEEEEGGGTEEEEE
T ss_pred eeCCcccCceEcCceeCCCcEEE------EEEEEEEhhhcCC-CcEE-EEEEECCCCCCEEE
Confidence 9998643110000 0012222 2379999988866 9999 99999988765443
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=132.67 Aligned_cols=102 Identities=23% Similarity=0.331 Sum_probs=88.1
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|+ +|.++++...+.++|.|+|++| ...||.|.+|+|+|+..+........+....++++|.+|+|++.|.|
T Consensus 2 tT~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 78 (108)
T 2djs_A 2 SSGSSGPS-TVPIMHQVSATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVV 78 (108)
T ss_dssp CSCCCCCC-CCSCCEEEEECSSEEEEECCCC--SCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEE
T ss_pred ccCCCCCC-CCcceEEEecCCCEEEEEECCC--CCCCCeEEEEEEEEEECCCCCcceeEEecCccEEEEcCCCCCCEEEE
Confidence 57788887 7789999999999999999999 77899999999999886533322334456789999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+|.+|.|++|.++.++|.+..
T Consensus 79 ~V~A~n~~G~g~~S~~~~~~T~~~~ 103 (108)
T 2djs_A 79 QVRARTVAGYGKFSGKMCFQTLTDS 103 (108)
T ss_dssp EEEEEESSCEEEECCCEEEECCCSS
T ss_pred EEEEEeCCEECCCCCCEEEEeCCCC
Confidence 9999999999999999999998765
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=154.21 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=123.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC-------------CCCceEEec---cceEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQ 154 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~ 154 (977)
..+.+...|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 93 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK 93 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence 345666778888899999999999998776 4889999863 211 134555542 34799
Q ss_pred EccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCe-----------------------EEecCCCcEEeeCCeEEEEE
Q psy574 155 LSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPI-----------------------VRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-----------------------~~~~p~~~~v~~G~~v~L~C 210 (977)
|.+++.+|+|.|+|.+.|..+. ....+.|.|..++. ....+....+.+|++++|.|
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C 173 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC 173 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence 9999999999999999987543 23345677764321 23345567899999999999
Q ss_pred EEecCCC--CeEEEEEcC--eee--eec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEE
Q psy574 211 GIEGSPP--PSTFWMLEG--NRS--LIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 211 ~~~g~p~--~~i~W~~~g--~~~--~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
.+.+.+. +.+.|+|+. ... +.. .....+++.+.... .+...|.|.+++.+|+|.|. |.+.
T Consensus 174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~ 252 (268)
T 1x9q_A 174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYY-CTGA 252 (268)
T ss_dssp EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEE
T ss_pred EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE-EEEc
Confidence 9998764 789999863 222 110 11234677776532 23468999999999999999 9998
Q ss_pred cC
Q psy574 272 NA 273 (977)
Q Consensus 272 n~ 273 (977)
+.
T Consensus 253 ~~ 254 (268)
T 1x9q_A 253 SY 254 (268)
T ss_dssp ET
T ss_pred cC
Confidence 74
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-15 Score=152.68 Aligned_cols=165 Identities=15% Similarity=0.247 Sum_probs=114.4
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EE---ee----------cCCCceEEEec----CcEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID----------FENSKRLRLVD----GTNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~---l~----------~~~~~r~~~~~----~g~L~I~~v 68 (977)
+...|..+.+.+|++|+|.|.+ . .+.+.|.|+|++ .. +. ....+|+.+.. +.+|.|.++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 79 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELA 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSC
T ss_pred cccCCCeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecC
Confidence 4567889999999999999998 3 457899999953 11 10 01245666643 247999999
Q ss_pred CCCCCeEEEEEEEecCc----eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEE
Q psy574 69 RKTDDGRYQCVVKNVAG----TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-LTVHWKR 135 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~~g----~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k 135 (977)
+.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +.|.|+|
T Consensus 80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999998642 1112335677764 455543 4555566789999999999875 65 4999999
Q ss_pred CCeeCCCCce-----EEeccce------EEEccCccCC-CeEEEEEEEeCC
Q psy574 136 LGSAMPEDRM-----SVLPSRS------LQLSDVRLED-AGEYVCEAENAV 174 (977)
Q Consensus 136 ~~~~l~~~~~-----~~~~~~~------L~I~~v~~~D-~G~Y~C~a~n~~ 174 (977)
++..+..+.. ....+++ |.|......| .|.|+|.|.|..
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~ 210 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG 210 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence 9988765321 1123343 3333333334 688999999974
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-15 Score=138.50 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=97.3
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--ceEEEEecCCcCeE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--ALINMTVSASTPTL 701 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~ 701 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+.. ...........+++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T 2dlh_A 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEP--EEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQIT 78 (121)
T ss_dssp CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECC--SCCCSCEEEEEEECCSCTTSCTTTSCCCCCSSCSEE
T ss_pred CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCC--CCCCCcEeEEEEEEEeCCCCCccccEEEecCCceEE
Confidence 578899999999999999889999999888999999999998 77899999999999875411 11111123467899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|+++.++|....
T Consensus 79 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 116 (121)
T 2dlh_A 79 TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGS 116 (121)
T ss_dssp CCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCC
T ss_pred EecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCC
Confidence 99999999999999999999999999999999997655
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=132.83 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=86.2
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+|.+++|+ +|.++++...+.++|.|+|++| ...||.|++|+|+|+..+ ........+....++++|.+|+|++.|.
T Consensus 2 tT~~~~P~-~p~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 78 (109)
T 2e7h_A 2 SSGSSGPP-AVSDIRVTRSSPSSLSLAWAVP--RAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYL 78 (109)
T ss_dssp CSSCCSSC-CCCCCEEEEEETTEEEEECCCC--CCSSSCCCEEEEEEEETTCCSTTTSEEEEESSSEEEEESCCTTSCEE
T ss_pred CCCCCCCC-CCCccEEEecCCCEEEEEeCCC--CCCCCcEeEEEEEEEECCCCCCceeEEEccCCCEEEECCCCCCCeEE
Confidence 57888887 6789999999999999999999 688999999999998864 2222122334567899999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|+|.+|.|++|.++.++|....
T Consensus 79 ~~V~A~n~~G~g~~S~~~~~~T~~~~ 104 (109)
T 2e7h_A 79 VQVRARSEAGYGPFGQEHHSQTQLDS 104 (109)
T ss_dssp EEEEEECSSCBCCCCSCEECCCCCCS
T ss_pred EEEEEEeCCccCCCCCCEEEEcCCCC
Confidence 99999999999999999999887755
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=131.17 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=90.3
Q ss_pred eccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCCCC
Q psy574 635 RTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLSAG 709 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~ 709 (977)
+|.+++|+.+|.++++... +.++|.|+|++| ...+|.|++|+|+|+..+ ...+....+....++++|.+|+|+
T Consensus 2 ~T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 79 (114)
T 2ede_A 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPP--LEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLD 79 (114)
T ss_dssp CCCCCCCCSCCEEEEEEECSSCSSCEEEEEECC--SSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSS
T ss_pred CCCCCCCCCCCcceEEEEccCCCCEEEEEECCC--CCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCC
Confidence 4788899889999999987 778999999999 778899999999998854 233445666788999999999999
Q ss_pred ceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 710 IRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 80 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 109 (114)
T 2ede_A 80 TMYYFRIQARNSKGVGPLSDPILFRTLKVS 109 (114)
T ss_dssp CEEEEEEEEECSSCBCCCCCCEEEECCCSS
T ss_pred CEEEEEEEEEeCCcCcCCcccEEEEecCCC
Confidence 999999999999999999999999997755
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=141.35 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=112.0
Q ss_pred CceEEeCCCeEEEEEEecc-cCceEEEEEEC-CeeC-------------CC--CceEE-eccceEEEccCccCCCeEEEE
Q psy574 107 KDTTVSASSIIVFECSVGG-DAVLTVHWKRL-GSAM-------------PE--DRMSV-LPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~-~~~l-------------~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C 168 (977)
..+.+.+|++++|.|.+.+ .+.+.|.|+|. +..+ .. +|+.+ ..+++|.|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 4568899999999999854 34689999994 3211 11 56666 467889999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 169 EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 169 ~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
.+.+.. .....+.|.|..++. .......+..++|.|.+ .+ |.+.+.|++++..+. ..
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~------------~~--- 144 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR------------SL--- 144 (180)
T ss_dssp EEESSS-EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE------------EE---
T ss_pred EEEcCC-eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc------------CC---
Confidence 998876 667788899985421 11122245679999999 55 899999999998753 01
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
...+|.+.. .+|+|.|+ |.|.|..+.....+.
T Consensus 145 ~~~~l~~~~--~~d~g~Y~-C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 145 RQKTMSYQW--TNLRAPFK-CKAVNRVSQESEMEV 176 (180)
T ss_dssp SSSEEEEEC--SCCSSCEE-EEEEETTEEEEEEEC
T ss_pred CCCEEEEEE--hhcCccEE-EEEecCcCcccccee
Confidence 112666633 78999999 999999987765543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=153.87 Aligned_cols=166 Identities=15% Similarity=0.198 Sum_probs=115.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---eec----------CCCc-eEEEecCcE--EEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---IDF----------ENSK-RLRLVDGTN--LAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~~----------~~~~-r~~~~~~g~--L~I~~v~ 69 (977)
+...|..+.+.+|++|+|.|.+ .+.+.+.|.|+|. +.. +.. ...+ |+.+..++. |.|.+++
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~ 82 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN 82 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEES
T ss_pred EEeCCCeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCC
Confidence 4556888999999999999998 6778899999982 111 100 0112 777765544 9999999
Q ss_pred CCCCeEEEEEEEecCc-----eeeeEeEEEEEE------cCCeEEeC-CCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 70 KTDDGRYQCVVKNVAG-----TRESTDAVLRVL------VKPYIIRG-PKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g-----~~~s~~~~l~V~------~~P~~~~~-p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
.+|+|.|+|.+.+..+ ......+.|.|. .+|.+... +....+..|+.++|.|.+.| .|.+ .+.|+|
T Consensus 83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 9999999999986543 112233467776 34444332 33333445789999999987 5666 899999
Q ss_pred CCeeCCCCceE---------------EeccceEEEccCccCC-CeEEEEEEEeCC
Q psy574 136 LGSAMPEDRMS---------------VLPSRSLQLSDVRLED-AGEYVCEAENAV 174 (977)
Q Consensus 136 ~~~~l~~~~~~---------------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~~ 174 (977)
++..+...... +.....|.|.....+| .|.|+|.|.|..
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 99887653221 1112367787777777 779999999864
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=134.26 Aligned_cols=109 Identities=25% Similarity=0.365 Sum_probs=93.8
Q ss_pred cceeCCCCCceEEeccCC------CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 622 GSVDGKPSNLRAVRTLEC------EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~~------~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
..|.|++|..+.++|.++ +|+ +|.++++...+ ++|.|+|++| ...||.|++|.|+|+. +........+.
T Consensus 3 ~~G~g~~S~~~~~~T~~~~~~~~~~P~-~P~~l~~~~~~-~sv~l~W~~P--~~~~g~i~~Y~v~y~~-~~~~~~~~~~~ 77 (126)
T 1x5i_A 3 SGSSGPATDWLSAETFESDLDETRVPE-VPSSLHVRPLV-TSIVVSWTPP--ENQNIVVRGYAIGYGI-GSPHAQTIKVD 77 (126)
T ss_dssp SCCCCCCCCCCCSCCCCTTSBCSSCCC-SCSEEEEEEET-TEEEEEEECC--SCTTBCCCEEEEEECS-SCGGGEEEECC
T ss_pred CCccCCCCCCEEeECccccCccCCCCC-CCCeeEEEecC-CEEEEEEcCC--CCCCCCEeEEEEEEEc-CCCCceEEEeC
Confidence 478899999999999998 887 89999999886 9999999999 6779999999999985 33344455677
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEee
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSL 735 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t 735 (977)
.+.++++|.+|+|++.|.|+|+|+|.+|.|++|.....++
T Consensus 78 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T~ 117 (126)
T 1x5i_A 78 YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR 117 (126)
T ss_dssp TTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCCEECC
T ss_pred CCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeEEecc
Confidence 8889999999999999999999999999999997544433
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=156.05 Aligned_cols=169 Identities=14% Similarity=0.197 Sum_probs=106.3
Q ss_pred ccceecccceEE--eCCCcEEEEEECCCCCC----CCeEEEEeCCEEeecCCCceEEEecCcEEEEcC---CCCC---CC
Q psy574 6 EEFRVQPKSQRV--AAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD---SRKT---DD 73 (977)
Q Consensus 6 ~~~~~~p~~~~v--~~G~~v~L~C~~~~g~P----~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~---v~~~---D~ 73 (977)
|.+.+.|....+ .+|++++|.|.+ .|.| ...|.|+|+|..+......+.....+|.|.|.. +... |+
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~-~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~ 80 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEE-EEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CeEEEeCcChHHheecCCceEEEEEE-ecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCC
Confidence 344555545444 799999999999 4543 359999999988743211112223355555432 3344 49
Q ss_pred eEEEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCC---ce
Q psy574 74 GRYQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPED---RM 145 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~---~~ 145 (977)
|.|+|.|.|..+... ...+.+ .+..+|.+...+.......|..++|.|.+.|. |. +.|.|+|+|..+... +.
T Consensus 81 g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~ 160 (207)
T 1l6x_A 81 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP 160 (207)
T ss_dssp CCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC
T ss_pred ceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCc
Confidence 999999999876531 222222 34456766544433222356679999999884 54 499999999887532 12
Q ss_pred EEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 146 SVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 146 ~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+++ |.|.....+|.|.|+|.|.|...
T Consensus 161 ~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 161 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred eECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 2233443 44444445679999999999753
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=132.95 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=94.4
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~ 704 (977)
+..+..+.++|.+.+|. +|.++++...+.++|.|+|++|. .+.+|.|.+|+|+|+..+ ........+....+.++|.
T Consensus 3 sgss~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~-~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (120)
T 1x5f_A 3 SGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ 80 (120)
T ss_dssp CCCCSSCCCCCCCCCCC-CCEEEEEEEECSSCEEEEEECCS-SCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEEC
T ss_pred CCCCCCEEecCCCCCCC-CCCCcEEEecCCCEEEEEECCCC-CCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeC
Confidence 34556677889988886 88999999999999999999983 388899999999999865 3333334445678999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 81 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 115 (120)
T 1x5f_A 81 NLMPATVYIFRVMAQNKHGSGESSAPLRVETQPES 115 (120)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEECCCEEEECCCCC
T ss_pred CCCCCCEEEEEEEEECCCccCCCCCCEEEEeCCCC
Confidence 99999999999999999999999999999997654
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=153.91 Aligned_cols=171 Identities=16% Similarity=0.255 Sum_probs=123.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-----------------CCCceEEec----cceEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-----------------PEDRMSVLP----SRSLQL 155 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-----------------~~~~~~~~~----~~~L~I 155 (977)
.+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|. +... ..+|+.+.. +.+|.|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34566778888999999999999986 57789999993 2211 115666653 567999
Q ss_pred ccCccCCCeEEEEEEEeC--CeeEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecCCCC--eEEEEE
Q psy574 156 SDVRLEDAGEYVCEAENA--VGKISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGSPPP--STFWML 224 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~--~g~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~ 224 (977)
.+++.+|+|.|+|.+.+. .........|.|.. +|.+.. .+....+.+|+.++|.|.+.+.+++ .+.|++
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 999999999999999973 33444556777774 565544 4555566779999999999986554 899999
Q ss_pred cCeeeeecC-----------CCccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 225 EGNRSLIYP-----------GDRVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 225 ~g~~~~~~~-----------~~~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
+|..+.... ....+.+.+. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~l~i~~~~~~d~~g~Yt-C~v~~~~l~~ 242 (268)
T 3pl6_D 185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSE 242 (268)
T ss_dssp SSSEECTTEEECSSCEESSTTCTTCCEEEE------EEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred CCEECCCCeEeccccccccccCCCCcEEEE------EEEEEcHHHhccCCCEEE-EEEEcCCCCC
Confidence 998763210 0012334333 278888888887 99999 9999986543
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-15 Score=149.43 Aligned_cols=184 Identities=8% Similarity=-0.012 Sum_probs=119.5
Q ss_pred EEEEEeeEeCCCeEEEEEEecCC--CccceEEEEEEecCCCCCceEEEEeecCccceEEECC--CCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEILNT--DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG--LAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~--~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~n~ 622 (977)
+.++++...+...+ |+|+++.. +....|.|+|+..+ ...|...........+.+.|++ |.++..|.++|+|.+.
T Consensus 11 P~nv~~~s~n~~~i-L~W~p~~~~~~~~~~Y~Vqy~~~~-~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~A~~~ 88 (211)
T 3g9v_A 11 PQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYG-QRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASA 88 (211)
T ss_dssp CEEEEEEEETTEEE-EEEECCCC---CCCEEEEEEEETT-CSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEEEEET
T ss_pred CceeEEEEEcCceE-EEECCCCCCCCCCeEEEEEEEECC-CCceEECccCCCCCCCEECCCCcccccCccEEEEEEEECC
Confidence 47999988888776 99999933 33788999999876 4788865444434567888875 5789999999999999
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCC--CCCee--------eeEEEEEEEecCCcceEEE
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVG--THNGV--------IRTYQIIVGGGNNSALINM 692 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~--~~ng~--------i~~Y~v~~~~~~~~~~~~~ 692 (977)
.+.+.++....|.+..+...+||. +.+...+ ++|.|.|++|... ..||. ...|+|.|++.+.... ..
T Consensus 89 ~~~S~ws~~~~f~~~~~t~i~PP~-v~v~~~~-~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~~-~~ 165 (211)
T 3g9v_A 89 GSYSEWSMTPRFTPWWETKIDPPV-MNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE-QK 165 (211)
T ss_dssp TEECCCEECCCBCHHHHCBCCCCE-EECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------C-EE
T ss_pred CCcCCCEecCcccccccCccCCCE-EEEEEcC-CEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCccE-EE
Confidence 999988877777775444456774 8877654 5899999999521 14553 4789999988543222 22
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEee
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSL 735 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t 735 (977)
.+....+.++|.+|+|++.|.|+|+|+.. ...|.+|.+.++++
T Consensus 166 ~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~~C~~~ 210 (211)
T 3g9v_A 166 VYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210 (211)
T ss_dssp EEEESSCCCC----------CEEEEEEETTTTEECCCCCC-----
T ss_pred EEecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCCEeECC
Confidence 33456788999999999999999999964 45688998887654
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-15 Score=134.77 Aligned_cols=105 Identities=25% Similarity=0.303 Sum_probs=92.9
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 702 (977)
|.|++|..+.++|.+++|+ +|.++++...+.++|.|+|++| ...||.|.+|+|+|+..+ ........+....++++
T Consensus 1 G~g~~S~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 1wfn_A 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 77 (119)
T ss_dssp CCCCCSCCCSCCSSCCSCC-CCSCCEEESCCSSEEEEECCCC--TTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEE
T ss_pred CCCCCCCCEEEECCCCCCC-CCCceEEEECCCCEEEEEEcCC--CCCCCcEEEEEEEEEECCCCCceEEEEeCCCceEEE
Confidence 5688999999999999997 6789999998999999999999 678999999999999865 33334456677889999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++
T Consensus 78 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~ 106 (119)
T 1wfn_A 78 VTGLTALTTYTIEVAAMTSKGQGQVSAST 106 (119)
T ss_dssp EESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred EcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence 99999999999999999999999999987
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=155.45 Aligned_cols=182 Identities=16% Similarity=0.295 Sum_probs=126.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--eC------------------CCCceEEecc-----ceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--AM------------------PEDRMSVLPS-----RSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~l------------------~~~~~~~~~~-----~~L~ 154 (977)
+.. |....+.+|++++|.|.+.+. +.+.+.|+|... .. ..+|+.+..+ .+|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 444 778899999999999999765 567899998531 11 0135555422 3799
Q ss_pred EccCccCCCeEEEEEEEeC---------CeeEEEEEEEEEee---------------CCeEEecCCCcEEeeCCeEEEEE
Q psy574 155 LSDVRLEDAGEYVCEAENA---------VGKISASATLTVQM---------------APIVRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~---------~g~~~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~~v~L~C 210 (977)
|.+++.+|+|.|+|.+.+. .......+.|.|.. ++.+...|. ..+.+|++++|.|
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C 161 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC 161 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence 9999999999999999986 12234456777766 445555555 8899999999999
Q ss_pred EEec-CC-CCeEEEEEcC--eeee--ec-----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc---
Q psy574 211 GIEG-SP-PPSTFWMLEG--NRSL--IY-----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS--- 276 (977)
Q Consensus 211 ~~~g-~p-~~~i~W~~~g--~~~~--~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~--- 276 (977)
.+.+ .+ .+.+.|+|.. .... .. .....+|+..... .+...|+|.+++.+|+|.|. |.+.|..+.
T Consensus 162 ~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~~~~~~~~~ 239 (280)
T 3fku_X 162 TGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS-GNTASLTITGLQPEDEADYY-CSTWDSSLSAVV 239 (280)
T ss_dssp ECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE-TTEEEEEECSCCGGGCSEEE-EEEEETTTTEEE
T ss_pred EecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCCHHHCEEEE-EEEecCCCCceE
Confidence 9987 43 3789999843 2211 10 0112356776653 34568999999999999999 999987632
Q ss_pred eeEEEEEEEEC
Q psy574 277 DLARASLTVSG 287 (977)
Q Consensus 277 ~~~~~~l~V~~ 287 (977)
....+.|.|..
T Consensus 240 ~g~~t~l~V~~ 250 (280)
T 3fku_X 240 FGGGTKLTVLG 250 (280)
T ss_dssp EBCCCEEEEC-
T ss_pred ECCCEEEEECC
Confidence 22334667765
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=148.55 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=121.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--eeC------------------CCCceEEec-----cceE
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSL 153 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L 153 (977)
.+...|..+.+.+|++++|.|.+.+. +.+.+.|+|+. ..+ ..+|+.+.. +.+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 45667888899999999999999775 66789999953 211 235665542 3579
Q ss_pred EEccCccCCCeEEEEEEEeCC------e-eEEEEEEEEEee-------CCeEEec-CCCcEEeeCCeEEEEEEEecC-CC
Q psy574 154 QLSDVRLEDAGEYVCEAENAV------G-KISASATLTVQM-------APIVRER-PSDLRLEVGRDAVFLCGIEGS-PP 217 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~------g-~~~~~~~L~V~~-------~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~ 217 (977)
.|.+++.+|+|.|.|.+.+.. . .....+.|.|.. +|.+.+. |....+.+|+.++|.|.+.+. |.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~ 162 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD 162 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence 999999999999999999853 1 122356788875 3433322 444456679999999999886 54
Q ss_pred -CeEEEEEcCe-eeeecC-C---CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 218 -PSTFWMLEGN-RSLIYP-G---DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 218 -~~i~W~~~g~-~~~~~~-~---~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+.+.|++++. .+.... . ...+.+... +.|.|..++. | |.|+ |.|.|..+.......+.+
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~-~-g~y~-C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF------SWLTVPEKSL-D-KEHR-CIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CEEEEEEESSSCCCCCCEECCCEECSSSEEEE------EEEEECTGGG-G-SCEE-EEEEETTSGGGSCEEEEE
T ss_pred CeEEEEEcCCCEeecCccccceecCCCcEEEE------EEEEEccccC-C-CEEE-EEEEeCCCCCCceeEeec
Confidence 6899999987 442100 0 011222222 3788887775 5 9999 999999987655555544
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=134.27 Aligned_cols=112 Identities=29% Similarity=0.409 Sum_probs=94.1
Q ss_pred CCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-c----eEEEEecCCcCeEE
Q psy574 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-A----LINMTVSASTPTLL 702 (977)
Q Consensus 628 ~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~----~~~~~~~~~~~~~~ 702 (977)
.|..+.++|.+++|+.+|.++++...+.++|.|+|++|..+..||.|.+|+|+|+..+.. . .......++.++++
T Consensus 2 sS~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T 1va9_A 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYT 81 (122)
T ss_dssp CCCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEE
Confidence 456788999999998899999999999999999999996445899999999999886521 1 11222345568999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 82 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 118 (122)
T 1va9_A 82 LDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESG 118 (122)
T ss_dssp EESCCSSCCEEEEEEEEETTEECCCCCCEECCCCSSC
T ss_pred eCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeCCCC
Confidence 9999999999999999999999999999999887655
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=157.38 Aligned_cols=165 Identities=14% Similarity=0.231 Sum_probs=113.9
Q ss_pred cccce-ecccceEEeCCCcEEEEEECCCC-CCC-C-eEEEEeCCEEe-ecCCCceEEEecC------cEEEEcCCCCCCC
Q psy574 5 REEFR-VQPKSQRVAAGDTALLECGPPRG-HPE-P-TLVWKKNGHPI-DFENSKRLRLVDG------TNLAIQDSRKTDD 73 (977)
Q Consensus 5 ~~~~~-~~p~~~~v~~G~~v~L~C~~~~g-~P~-~-~v~W~k~g~~l-~~~~~~r~~~~~~------g~L~I~~v~~~D~ 73 (977)
.|.+. ..|..+.+.+|++++|.|.+ .+ .|. + .|.|+|||+.+ .... .......+ ..|.|.+++.+|+
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~-~g~~P~~p~~v~W~~~g~~~~~~~~-~~~~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLV-VNLPSDSSLSVTWTREKSGNLRPDP-MVLQEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEE-EEESCCTTCEEEEECSSSSCCCCCC-CEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEeCcChhhcccCCceEEEEEE-eCccCCCCeEEEEEcCCeecccccc-ccceECCCCcEEEEEEEEecchhccCC
Confidence 34443 56777778999999999999 55 574 4 99999999877 3211 11112222 3699999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE------cCCeEEe-CCCceEEeCCCeEEEEEEeccc-C-ceEEEEEECCeeCCCCc
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL------VKPYIIR-GPKDTTVSASSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~------~~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~ 144 (977)
|.|+|.|.|..+. ..+.+.|. .+|.+.. .+.... ..+..++|.|.+.|. | .+.|.|+|+|..+..+.
T Consensus 90 g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 165 (231)
T 2w59_A 90 ERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATE 165 (231)
T ss_dssp CCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGG
T ss_pred CEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcc
Confidence 9999999987653 22344443 3565543 333222 335679999999885 4 37999999999886543
Q ss_pred eE-----Ee--------cc-------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MS-----VL--------PS-------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~-----~~--------~~-------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+. .. .+ ..|.|.....+|.|.|+|.|.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l 216 (231)
T 2w59_A 166 FVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL 216 (231)
T ss_dssp CEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence 11 11 22 3477888888889999999999764
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=150.98 Aligned_cols=169 Identities=14% Similarity=0.236 Sum_probs=117.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eeec----------CCCceEEEec----CcEEEEc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF----------ENSKRLRLVD----GTNLAIQ 66 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~~----------~~~~r~~~~~----~g~L~I~ 66 (977)
..+.+.|..+.+.+|++++|.|.+ . .+.+.|.|+|+. . .+.. ...+|+.+.. +.+|.|.
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~ 81 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVT 81 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEEC
T ss_pred ccceEcCCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEEC
Confidence 456778889999999999999998 3 457899999852 1 1110 1246777753 3579999
Q ss_pred CCCCCCCeEEEEEEEecCc--eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEE
Q psy574 67 DSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-LTVHWKR 135 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g--~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k 135 (977)
+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +.|.|+|
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 161 (252)
T 1oga_E 82 SAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 161 (252)
T ss_dssp SCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred cCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE
Confidence 9999999999999998521 1112234677763 565544 3544455679999999999875 65 5999999
Q ss_pred CCeeCCCCceEE---------eccc------eEEEccCccC-CCeEEEEEEEeCCee
Q psy574 136 LGSAMPEDRMSV---------LPSR------SLQLSDVRLE-DAGEYVCEAENAVGK 176 (977)
Q Consensus 136 ~~~~l~~~~~~~---------~~~~------~L~I~~v~~~-D~G~Y~C~a~n~~g~ 176 (977)
++..+..+.... ..++ .|.|...... |.|.|+|.+.|....
T Consensus 162 ~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 162 NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp TTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 998876532211 1222 3777666654 678999999997643
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-14 Score=149.10 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=116.5
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I 155 (977)
+..|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|
T Consensus 10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 89 (261)
T 2xqy_G 10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL 89 (261)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence 3446677899999999999998766 6789999973 211 024565543 358999
Q ss_pred ccCccCCCeEEEEEEEeCCe---eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 156 SDVRLEDAGEYVCEAENAVG---KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
.+++.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g 169 (261)
T 2xqy_G 90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 169 (261)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence 99999999999999998643 122346788874 4555543333356789999999999875 766 99999998
Q ss_pred eeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 227 NRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 227 ~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..+...... ..+.+... +.|.|..+..+| |.|+ |.|.|.....
T Consensus 170 ~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Yt-C~v~n~~~~~ 215 (261)
T 2xqy_G 170 LSSGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASST 215 (261)
T ss_dssp CCTTEEECCCEEETTEEEEE------EEEEEETTTTTT-SCCE-EEEEEGGGTE
T ss_pred CcCceEecCceecCCcEEEE------EEEEEeccccCC-CEEE-EEEEECCCCc
Confidence 754211000 00222222 389999988888 9999 9999976553
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=148.99 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--------------CeeC-----CCCceEEec----cceEEEc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------------GSAM-----PEDRMSVLP----SRSLQLS 156 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--------------~~~l-----~~~~~~~~~----~~~L~I~ 156 (977)
+.+...|..+.+.+|++++|.| ..+.+.+.+.|+|. +... ..+|+.+.. +.+|.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 3456677888999999999999 66678889999992 2111 115666553 2389999
Q ss_pred cCccCCCeEEEEEEEeC----CeeEEEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEE
Q psy574 157 DVRLEDAGEYVCEAENA----VGKISASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWM 223 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~ 223 (977)
+++.+|+|.|+|.+.+. .......+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 99999999999999953 2234455677776 3565543 445556677999999999988 4445 89999
Q ss_pred EcCeeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 224 LEGNRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 224 ~~g~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
++|..+...... ..+.+.+. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~~g~yt-C~v~~~~l~~ 220 (245)
T 4ei6_B 162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGLSE 220 (245)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEE------EEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEE------EEEEEcHHHhccCCCeEE-EEEEECCCCC
Confidence 999876421000 12233333 268999998888 99999 9999876543
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=172.39 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=123.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
...+.+.+|++++|.|.+..+.|.+.|.|+|++..+.. ....|..+..+++|.|.+++.+|+|.|+|++.
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence 34578999999999998866789999999998763211 11456777778899999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeE-EeCCCceEEeCCCeE-EEEEEecc-cCceEEEEEECCeeCCC--CceEEe----c---
Q psy574 82 NVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSII-VFECSVGG-DAVLTVHWKRLGSAMPE--DRMSVL----P--- 149 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~-~~~p~~~~v~~G~~v-~l~C~v~g-~p~~~i~W~k~~~~l~~--~~~~~~----~--- 149 (977)
|..+......+.|.|..+|.. ...+....+.+|+.. .|.|.+.+ .|.+.|+|++++..+.. .+..+. .
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~ 532 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE 532 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence 998876567789999875432 122223335566554 66999977 69999999999998864 232221 1
Q ss_pred ------cceEEEccCc-cCCCeEEEEEEEeCCe
Q psy574 150 ------SRSLQLSDVR-LEDAGEYVCEAENAVG 175 (977)
Q Consensus 150 ------~~~L~I~~v~-~~D~G~Y~C~a~n~~g 175 (977)
..+|.|.++. .++.|.|+|.|.|...
T Consensus 533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred CceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence 1469999998 5558999999999864
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-14 Score=145.88 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=116.2
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C--------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M--------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l--------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34566889999999999997764 5789999963 21 1 125666542 238999999
Q ss_pred ccCCCeEEEEEEEeCC--e----eEEEEEEEEEee----CCeEEe-cCCCcEEeeC-CeEEEEEEEecC-CCC-eEEEEE
Q psy574 159 RLEDAGEYVCEAENAV--G----KISASATLTVQM----APIVRE-RPSDLRLEVG-RDAVFLCGIEGS-PPP-STFWML 224 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~--g----~~~~~~~L~V~~----~p~~~~-~p~~~~v~~G-~~v~L~C~~~g~-p~~-~i~W~~ 224 (977)
+.+|+|.|.|.+.+.. + .....+.|.|.. +|.+.. .|.. .+..| +.++|.|.+.+. |.+ .+.|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~ 164 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKY 164 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence 9999999999998421 1 223446788874 354443 3332 34578 999999999885 776 999999
Q ss_pred -cCeeeeec---CC-CccccEEEEEccCCceEEEEeeccc--CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 225 -EGNRSLIY---PG-DRVDNIQAEITSDGMNLLKIQNVSR--TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 225 -~g~~~~~~---~~-~~~~~~~~~~~~~g~s~L~I~~v~~--~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+|..+... .. ...+.+... +.|.|..... +|.|.|+ |.|.|..+.......+.|..
T Consensus 165 ~~g~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~~d~g~yt-C~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 165 KNNSDISSTRGFPSVLRGGKYAAT------SQVLLPSKDVMAGTDEHVV-CKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTSCEECCEEECCCEEETTEEEEE------EEEEECTTCC---CCCEEE-EEEECTTCCEEEEEECCC--
T ss_pred CCCCceeeEEECCccccCCcEEEE------EEEEEcHHHhcccCCCeEE-EEEEeCCCCcceeEecCCCC
Confidence 88765320 00 001233322 3789988887 8899999 99999998876666665544
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=131.69 Aligned_cols=105 Identities=24% Similarity=0.305 Sum_probs=90.0
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCce
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~ 711 (977)
+.++|.+++|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+........+....++++|.+|+|++.
T Consensus 2 v~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 78 (111)
T 1x5l_A 2 SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTR 78 (111)
T ss_dssp CCCCCSCCCCC-CCCCEECSCBCSSCEEEEECCC--SCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCE
T ss_pred ceEEcCCCCCC-CCceEEEEEcCCCEEEEEECCC--CCCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCE
Confidence 56789999997 6789998888899999999999 67799999999999986522223334456789999999999999
Q ss_pred EEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 712 YSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 712 Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.|+|+|+|.+|.|++|.++.++|....
T Consensus 79 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 106 (111)
T 1x5l_A 79 YVFQVRARTSAGCGRFSQAMEVETGKPS 106 (111)
T ss_dssp EEECEEEEETTEECCCCCCEEEECCCTT
T ss_pred EEEEEEEEeCCcCCCCcccEEEEcCCCC
Confidence 9999999999999999999999998765
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-15 Score=158.22 Aligned_cols=167 Identities=14% Similarity=0.195 Sum_probs=111.8
Q ss_pred ccceecccceE--EeCCCcEEEEEECCCCC---CCC-eEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCC
Q psy574 6 EEFRVQPKSQR--VAAGDTALLECGPPRGH---PEP-TLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKT 71 (977)
Q Consensus 6 ~~~~~~p~~~~--v~~G~~v~L~C~~~~g~---P~~-~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~ 71 (977)
|.+.+.|.... +.+|++++|.|.+ .+. |.+ .|.|+|++..+... ..+++. ..+.|.|.+++.+
T Consensus 16 P~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~s~L~I~~~~~~ 92 (239)
T 1i1c_A 16 SSVFIFPPKTKDVLGGGLTPKVTCVV-VDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR--SVSELPIVERDWL 92 (239)
T ss_dssp -CEEEECCCHHHHTTSSSCCEEEEEE-EEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE--EEEEEECCHHHHH
T ss_pred CEEEEECCChHHhcccCCcEEEEEEE-ecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE--EEEEEEEEhhHcc
Confidence 34444444444 7899999999999 454 766 99999998766311 111221 1347999999999
Q ss_pred CCeEEEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCc-eEEEEEECCeeCCCC---
Q psy574 72 DDGRYQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAV-LTVHWKRLGSAMPED--- 143 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~-~~i~W~k~~~~l~~~--- 143 (977)
|+|.|+|.+.|..+... ...+.+ .+..+|.+...+.......|+.++|.|.+.| .|. ..|.|+|+|..+...
T Consensus 93 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 172 (239)
T 1i1c_A 93 NGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT 172 (239)
T ss_dssp TTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred CCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence 99999999999876432 122222 3456777665554433346889999999987 454 489999999988542
Q ss_pred ceEEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 144 RMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 144 ~~~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.....+++ |.|.....+|.|.|+|.|.|...
T Consensus 173 ~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 173 PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 112234444 33444444579999999999763
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.6e-13 Score=145.60 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=141.7
Q ss_pred eEEEeccCCCCCeEEEEEEEc-CCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 345 SLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 345 sl~I~~v~~~d~G~Y~C~a~n-~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
...+..+.+.+.+.++..|.+ ..|....+..+..... .....+|.+|.++.+...+.+++.++|.++..
T Consensus 54 ~~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~----------~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~ 123 (314)
T 3bpo_C 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCIS----------PPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123 (314)
T ss_dssp SEEEEECCCSSCEEEEEEECC---------CCEEEEEC----------CCCC-CCSSCEEEEEEEETTTEEEEEEECCC-
T ss_pred cEEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeee----------cCCCCCCCCCEeceEEECCCCeEEEEECCCCC
Confidence 455666777778888888743 3333222222221100 01125678899999998889999999999876
Q ss_pred CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec---eecCcCeEEEEccC----CCCeEEEEEEEEcCCCCCCCCCC
Q psy574 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA---TNVPSPILTVTNLT----VGLTYTFLVRALNSHGLSAPSPL 496 (977)
Q Consensus 424 ~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~----p~t~Y~~~V~a~n~~G~s~~S~~ 496 (977)
. +.+.+|.|.|...... .|..+. .......+.+..+. .++.|.|+|.|.|..|.+..+.
T Consensus 124 ~--~~~~~Y~l~y~~~~~~-----------~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~- 189 (314)
T 3bpo_C 124 T--SPDTNYTLYYWHRSLE-----------KIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSF- 189 (314)
T ss_dssp ----CCCCEEEEEEESSCS-----------SCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCEE-
T ss_pred C--CCCccEEEEEEeCCCC-----------ccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceeccc-
Confidence 2 4578999999765322 232221 11223456666665 4789999999999988775432
Q ss_pred CceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecC--CCccce
Q psy574 497 SDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN--TDYIEG 574 (977)
Q Consensus 497 s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~--~~~i~~ 574 (977)
..+ .......|+ || .++++. ...+++.|+|++|. ...+.+
T Consensus 190 ---~~~-~~~~~v~P~---------pP------------------------~~l~~~-~~~~~l~lsW~~P~~~~~~~l~ 231 (314)
T 3bpo_C 190 ---NIV-PLTSRVKPD---------PP------------------------HIKNLS-FHNDDLYVQWENPQNFISRCLF 231 (314)
T ss_dssp ---EEE-CSSSSEECC---------CC------------------------EEEEEE-EETTEEEEEEECCTTCCGGGEE
T ss_pred ---EEE-ehhheEeeC---------CC------------------------CEEEEE-EcCCcEEEEEeCCCccCCceEE
Confidence 222 111111222 33 677887 77889999999993 445689
Q ss_pred EEEEEEecCCCCCceEEEEe-----------ecCccceEEECCCCCCcEEEEEEEEeec------ce-eCCCCCceEEec
Q psy574 575 VYIYSRGLDPPASVAMLTVL-----------HAGEASGFLVTGLAHYSRYEFFLVPFFG------SV-DGKPSNLRAVRT 636 (977)
Q Consensus 575 Y~v~y~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~L~p~t~Y~~~V~a~n~------~g-~g~~s~~~~~~T 636 (977)
|.|+|+..+ ...|....+. .....+.+.|.+|+|++.|.|+|+|.+. .| .|.+|..+.+.+
T Consensus 232 Yev~y~~~~-~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~ 310 (314)
T 3bpo_C 232 YEVEVNNSQ-TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGK 310 (314)
T ss_dssp EEEEEEC---CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESC
T ss_pred EEEEEEECC-CCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEecc
Confidence 999999876 4567644331 1135678999999999999999999985 34 366777777754
Q ss_pred c
Q psy574 637 L 637 (977)
Q Consensus 637 ~ 637 (977)
.
T Consensus 311 ~ 311 (314)
T 3bpo_C 311 K 311 (314)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=139.35 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=118.6
Q ss_pred EEEEeeEe-CCCeEEEEEEec-CCCccc-eEEEEEEecCC-CC--------CceEEEEeecCccceEEECCCCCCcEEEE
Q psy574 548 ELTEVKPM-TSTSVKLTWEIL-NTDYIE-GVYIYSRGLDP-PA--------SVAMLTVLHAGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 548 ~~l~~~~~-~~tsv~lsW~~p-~~~~i~-~Y~v~y~~~~~-~~--------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 615 (977)
.+|.+..- ....++++|++. .....+ .|.+.|+..+. .. ...............+.|..|..++.|.|
T Consensus 5 ~nlsC~~~~~~~~~~C~W~~g~~~~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~Y~~ 84 (206)
T 3v6o_A 5 INISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTM 84 (206)
T ss_dssp CCCEEEECTTSSCEEEEECCCC--------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSCEEE
T ss_pred EEEEEEECCCCcEEEEEecCCCcCCcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcccEEE
Confidence 46777777 568999999998 333334 68998876542 00 01111112223456889999999999999
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEE
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMT 693 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~ 693 (977)
+|.|.|..|.+. |..+.+.+...+.+.||.++++... +.+++.|+|++|. ..+ .++.|+|+|+..+ ...+....
T Consensus 85 ~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~--~~~-~~l~yev~y~~~~~~~~w~~~~ 160 (206)
T 3v6o_A 85 WIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPV--FPE-NNLQFQIRYGLSGKEVQWKMYE 160 (206)
T ss_dssp EEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC-----------CEEEEEEEEESSSSCCCEEEE
T ss_pred EEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCC--CCC-CcEEEEEEEEECCCCCceEEEe
Confidence 999999988764 6667887777776679999998765 5789999999984 333 4689999999865 23343333
Q ss_pred e-cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceE
Q psy574 694 V-SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPAL 732 (977)
Q Consensus 694 ~-~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~ 732 (977)
. ......+.|.+|+|++.|.|+|||.+..|.|.| |+++.
T Consensus 161 ~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~~~~ 203 (206)
T 3v6o_A 161 VYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY 203 (206)
T ss_dssp ECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred cccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCcceE
Confidence 3 223357899999999999999999998777654 55544
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=139.83 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=132.7
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeE
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y 478 (977)
.+|.++.+...+. ...|+|.+|... ++. ..|.|+|+.. . .|.........+.+.|.+|.+++.|
T Consensus 3 p~P~nv~~~s~n~-~~iL~W~pp~~~-~~~-v~Y~V~y~~~--~-----------~w~~~c~~~~~~~c~lt~l~~~~~Y 66 (201)
T 3lqm_A 3 PPPENVRMNSVNF-KNILQWESPAFA-KGQ-LTFTAQYLSY--R-----------IFQDKCMQTTLTECDFSSLSKYGDH 66 (201)
T ss_dssp CCCEEEEEEEETT-EEEEEEECCCCS-SSC-CEEEEEEEET--T-----------EEEEEEEEESSSEEECTTSCSSSCE
T ss_pred CCCcccEEEEECC-ceEEEECCCCCC-CCC-eEEEEEEEEC--C-----------CcccCcCccCCCEEECCCCccCCCE
Confidence 4688888876665 467999999873 333 4699999875 1 7887666778899999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCC
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTST 558 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~t 558 (977)
.|+|+|.|..|.|.++. . ..... .+..+. || .+++. ...+
T Consensus 67 ~~rV~A~~~~~~S~~s~---~-~f~~~-~~t~~~---------PP-------------------------~v~~~-~~~~ 106 (201)
T 3lqm_A 67 TLRVRAEFADEHSDWVQ---I-TFSPV-DDTIIG---------PP-------------------------GMQVE-VLAD 106 (201)
T ss_dssp EEEEEEEETTEECCCEE---E-EECHH-HHSBCC---------CC-------------------------EEEEE-EETT
T ss_pred EEEEEEecCCCcCccee---e-eeeec-ccCeeC---------CC-------------------------EEEEE-EeCC
Confidence 99999999877776653 1 11000 000011 11 25554 4468
Q ss_pred eEEEEEEec--C-CC---------ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec--ce
Q psy574 559 SVKLTWEIL--N-TD---------YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG--SV 624 (977)
Q Consensus 559 sv~lsW~~p--~-~~---------~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~--~g 624 (977)
+|.|+|.+| . ++ .+..|+|.|++.+....+. +. .....+.|.+|+|++.|.|+|+|.+. .+
T Consensus 107 si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~~---~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~ 181 (201)
T 3lqm_A 107 CLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ---IT--PQYDFEVLRNLEPWTTYCVQVRGFLPDRNK 181 (201)
T ss_dssp EEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCCEE---EC--CSSSEEEECSCCTTCEEEEEEEEEETTTTE
T ss_pred EEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcEEE---EE--ecCceEEEecCCCCCcEEEEEEEEeccCCC
Confidence 999999999 2 23 3789999999876543321 21 45578999999999999999999997 68
Q ss_pred eCCCCCceEEeccCCC
Q psy574 625 DGKPSNLRAVRTLECE 640 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~ 640 (977)
.|.+|..+.++|..+.
T Consensus 182 ~g~~S~~~c~~T~~~~ 197 (201)
T 3lqm_A 182 AGEWSEPVCEQTTHDE 197 (201)
T ss_dssp ECCCCCCEEEECCCGG
T ss_pred CCCcCCCEeEEeCCCC
Confidence 8999999999987654
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=127.30 Aligned_cols=92 Identities=32% Similarity=0.520 Sum_probs=80.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEec---cceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+|.|...|.++.+.+|+++.|.|.+.|.|.+.|.|+|++..+.. .++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 91 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence 478899999999999999999999999999999999999999875 4455442 247999999999999999999999
Q ss_pred CeeEEEEEEEEEeeCC
Q psy574 174 VGKISASATLTVQMAP 189 (977)
Q Consensus 174 ~g~~~~~~~L~V~~~p 189 (977)
.|..+..+.|.|..+|
T Consensus 92 ~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 92 AGEAYAAAAVTVLEPP 107 (107)
T ss_dssp TEEEEEEEEEEEEC--
T ss_pred CCEEEEEEEEEEEcCC
Confidence 9999999999998765
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=130.89 Aligned_cols=112 Identities=26% Similarity=0.390 Sum_probs=96.5
Q ss_pred CcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCC---CCCceEEEEeecCccceEE
Q psy574 528 RGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDP---PASVAMLTVLHAGEASGFL 603 (977)
Q Consensus 528 ~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~---~~~~~~~~~~~~~~~~~~~ 603 (977)
.|.+..+.+.+|. +..++++.+..+++++|.|+|+++ .++.|.+|+|.|++.+. ...|....+.. ....+++
T Consensus 3 ~g~~~~~~~~~l~---~~~v~l~~~~a~sstsi~vsW~~~~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~-~~~~~~~ 78 (120)
T 1ujt_A 3 SGSSGRQVQKELG---DVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKV-PTERSAV 78 (120)
T ss_dssp CCCCCSTHHHHHH---HCCEEECCCCCCBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCC-TTCCEEE
T ss_pred Cccccchheeeec---ccEEEeeccEEccCceEEEEEccCCCCCcEeeEEEEEEECCCCCCCCccEEEEecC-CCcCEEE
Confidence 4677777777773 457889999999999999999987 77899999999999874 35777655543 5678999
Q ss_pred ECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCC-CCC
Q psy574 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECE-PSG 643 (977)
Q Consensus 604 i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~-P~~ 643 (977)
|.+|+|+|.|.|+|+|+|..|.|++|..+.++|.+++ |+.
T Consensus 79 l~~L~p~T~Y~~~V~A~n~~G~Gp~S~~v~~~T~e~v~Ps~ 119 (120)
T 1ujt_A 79 LVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSS 119 (120)
T ss_dssp EESCCSSEEEEEEEEEESSSCCCCCCCCEEEEECSSCCCCC
T ss_pred ECCCCCCCEEEEEEEEECCCccCCCCCCEEEECCCCCCCCC
Confidence 9999999999999999999999999999999999999 863
|
| >4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=150.65 Aligned_cols=168 Identities=14% Similarity=0.006 Sum_probs=98.9
Q ss_pred CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeec
Q psy574 425 GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504 (977)
Q Consensus 425 ~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~ 504 (977)
.+..+.+|.|++..... .|.........+++++.+|.|++.|.|+|+|.|..|.|.+|......+. .
T Consensus 18 ~~~~Vt~Y~~~~~~~~~------------~~~~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~-~ 84 (232)
T 4go6_B 18 TNVMVTHYFLPPDDAVP------------SDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTC-L 84 (232)
T ss_dssp SEEEECEEECCCC------------------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECC-C
T ss_pred CCEEEEEEEEEeeCCCC------------CcEEEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeec-C
Confidence 35567788887643221 3333434455678999999999999999999999999988765443322 1
Q ss_pred cccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEec
Q psy574 505 TFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGL 582 (977)
Q Consensus 505 ~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~ 582 (977)
..+ | .++. +.....+.++|.|+|++| +++.|.+|+|+|+..
T Consensus 85 ~~~---~---------------------------------~~~~-~~~~~~~~~sv~l~W~~P~~~~G~i~~Y~v~~~~~ 127 (232)
T 4go6_B 85 PGF---P---------------------------------GAPC-AIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQ 127 (232)
T ss_dssp TTS---C---------------------------------CCCE-EEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEC
T ss_pred CCC---C---------------------------------CCCe-eeEEecCCCEEEEEEeCCCCCCCceeeEEEEEEEC
Confidence 111 1 1112 233456789999999999 677999999999877
Q ss_pred CCCCC------------ceEEEEee------cCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCC
Q psy574 583 DPPAS------------VAMLTVLH------AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642 (977)
Q Consensus 583 ~~~~~------------~~~~~~~~------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~ 642 (977)
+.... |....... ......+.+.+|.+++.|.|+|+|.|..|.|+.|+...+.+....|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~~~p~ 205 (232)
T 4go6_B 128 SSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSS 205 (232)
T ss_dssp -------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEEEEEECC------
T ss_pred CCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCcccEEeccCCCCCC
Confidence 64211 11111110 01112234567999999999999999999999988666666555544
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=129.27 Aligned_cols=112 Identities=22% Similarity=0.351 Sum_probs=95.2
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~ 702 (977)
|.|.+|..+.++|...+|. +|.++++...+.++|.|+|++| .+.++.|.+|.|+|+..+. ..+... .....+.++
T Consensus 1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~ 76 (118)
T 1x3d_A 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKGNGEFCQC-YMGSQKQFK 76 (118)
T ss_dssp CCCCCCCCCCCCCCCSCCC-CCCCCEEEEEETTEEEEECCCC--CCCSSCEEEEEEEECTTTSSSCCEEE-EEESCSEEE
T ss_pred CCCCCCcCEEEEcCCCCCc-CCCCcEEeccCCCEEEEEECCC--CCCCCcceEEEEEEecCCCCCCeEEe-eccCCcEEE
Confidence 5677889999999999986 7889999999999999999999 5668899999999987553 333332 334568999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.+|+|++.|.|+|+|+|.+|.|.+|.++.+.|....
T Consensus 77 v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~ 113 (118)
T 1x3d_A 77 ITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113 (118)
T ss_dssp EESCCTTCEEEEECCEEESSCBCCCCCCEEEECSCCC
T ss_pred eCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCCCC
Confidence 9999999999999999999999999999999887654
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=148.69 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=114.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-c---------C-CCceEEEecC-----cEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-F---------E-NSKRLRLVDG-----TNL 63 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-~---------~-~~~r~~~~~~-----g~L 63 (977)
.+...|..+.+.+|++|+|.|.+ .+. +.+.|.|+|.. . .+- . . ..+|+.+..+ .+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (230)
T 1ypz_F 3 KLEQPEISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSIL 81 (230)
T ss_dssp SEECSCSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEE
T ss_pred cccccCCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEE
Confidence 35667888999999999999998 443 56789999842 1 110 0 1 3568877632 279
Q ss_pred EEcCCCCCCCeEEEEEEEec--Cc-eeeeEeEEEEEEc---------CCeE-EeCCCceEEeCCCeEEEEEEeccc-Cc-
Q psy574 64 AIQDSRKTDDGRYQCVVKNV--AG-TRESTDAVLRVLV---------KPYI-IRGPKDTTVSASSIIVFECSVGGD-AV- 128 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~--~g-~~~s~~~~l~V~~---------~P~~-~~~p~~~~v~~G~~v~l~C~v~g~-p~- 128 (977)
.|.+++.+|+|.|.|.+.+. .. ......+.|.|.. +|.. +..|....+.+|+.++|.|.+.|. |.
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~ 161 (230)
T 1ypz_F 82 TIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDV 161 (230)
T ss_dssp EECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred EECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCC
Confidence 99999999999999999874 11 1122345788862 2321 222444455679999999999875 75
Q ss_pred eEEEEEE-CCeeCCCCc---eE-----EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 129 LTVHWKR-LGSAMPEDR---MS-----VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 129 ~~i~W~k-~~~~l~~~~---~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+.|.|++ ++..+.... .. ......|.|..... | |.|+|.|.|....
T Consensus 162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 5999999 776664321 11 11124688888775 5 9999999997653
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=141.52 Aligned_cols=164 Identities=19% Similarity=0.295 Sum_probs=115.9
Q ss_pred CCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--eC--------------------CCCceEEecc-----ceEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--AM--------------------PEDRMSVLPS-----RSLQL 155 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~l--------------------~~~~~~~~~~-----~~L~I 155 (977)
.|....+.+|++++|.|.+.+. +.+.+.|+|... .. ..+|+.+..+ .+|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 3456778999999999999764 367899998531 10 1245555433 26999
Q ss_pred ccCccCCCeEEEEEEEeCC--eeEEEEEEEEEe----eCCeEE-ecCCCcEEeeCCeEEEEEEEec-CCC-C-eEEEEEc
Q psy574 156 SDVRLEDAGEYVCEAENAV--GKISASATLTVQ----MAPIVR-ERPSDLRLEVGRDAVFLCGIEG-SPP-P-STFWMLE 225 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~--g~~~~~~~L~V~----~~p~~~-~~p~~~~v~~G~~v~L~C~~~g-~p~-~-~i~W~~~ 225 (977)
.+++.+|+|.|.|.+.+.. ......+.|.|. .+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|+++
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~ 163 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES 163 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence 9999999999999999863 223344567775 345554 334443 78999999999988 665 3 8999999
Q ss_pred CeeeeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 226 GNRSLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 226 g~~~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|..+..... ...+++.+. +.|.|..++..|.|.|+ |.|.|..+..
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~yt-C~v~~~~~~~ 213 (221)
T 3m8o_H 164 GQGVTARNFPPSQDASGDLYTTS------SQLTLPATQCLAGKSVT-CHVKHYTNPS 213 (221)
T ss_dssp STTCEEEECCCEECSSSSCEEEE------EEEEEEGGGSCTTCEEE-EEEEETTSCC
T ss_pred CEECceEEcCceeeCCCCcEEEE------EEEEECHHHcCCCCeEE-EEEEECCCCc
Confidence 876532110 122334333 27999999999999999 9999987654
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=151.37 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=116.0
Q ss_pred EEeCCCceE-EeCCCeEEEEEEeccc---Cce-EEEEEECCeeCCCCce---------EEeccceEEEccCccCCCeEEE
Q psy574 102 IIRGPKDTT-VSASSIIVFECSVGGD---AVL-TVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 102 ~~~~p~~~~-v~~G~~v~l~C~v~g~---p~~-~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
+...|.... +.+|++++|.|.+.|. |.+ .|.|+|++..+..... .......|.|.+++.+|+|.|+
T Consensus 19 ~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~ 98 (239)
T 1i1c_A 19 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFK 98 (239)
T ss_dssp EEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred EEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEE
Confidence 344444444 7899999999999876 765 8999999876643210 1112347999999999999999
Q ss_pred EEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.+.|..+. ....+.+ .+..+|.+...+.......|+.++|.|.+.|. |. ..|.|+|+|..+.. .....
T Consensus 99 C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~-----~~~~~ 173 (239)
T 1i1c_A 99 CKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN-----YKNTP 173 (239)
T ss_dssp EEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS-----EEECC
T ss_pred EEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCC-----ceecC
Confidence 999998775 2333333 44577887766655433458899999999884 44 38999999987531 11111
Q ss_pred EEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 242 AEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 242 ~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.....+|. +.|.|......|.|.|+ |.|.|.....
T Consensus 174 ~~~~~dgt~~~~s~l~v~~~~~~~~g~Yt-C~v~n~~l~~ 212 (239)
T 1i1c_A 174 PTMDTDGSYFLYSKLNVKKETWQQGNTFT-CSVLHEGLEN 212 (239)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHHTTCCEE-EEEECTTSGG
T ss_pred ceECCCCCEEEEEEEEEChhhcCCCCEEE-EEEECCCCCC
Confidence 11122332 24566666566899999 9999987653
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-14 Score=146.16 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=117.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--------------eeC----CCCceEEec----cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--------------SAM----PEDRMSVLP----SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--------------~~l----~~~~~~~~~----~~~L~I~~v 158 (977)
.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.. ... ..+|+.+.. +.+|.|.++
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence 3455677889999999999999976 77899999931 111 124555543 347999999
Q ss_pred ccCCCeEEEEEEEeC---CeeEEEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 159 RLEDAGEYVCEAENA---VGKISASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~---~g~~~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
+.+|+|.|+|.+.+. .......+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g 162 (240)
T 3q5y_A 83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 162 (240)
T ss_dssp CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence 999999999999832 1223445567776 4565554 344556677999999999988 5656 78999999
Q ss_pred eeeeecCCCccccEEEEEccCCc----eEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
..+..... ........ .++. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 163 ~~l~~~~~-~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~g~Yt-C~v~~~~~~~ 214 (240)
T 3q5y_A 163 KEVHSGVS-TDPQAYKE--SNYSYSLSSRLRVSATFWHNPRNHFR-CQVQFHGLSE 214 (240)
T ss_dssp EEECTTEE-ECSSCEEE--ETTEEEEEEEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred EECcCcEe-cCCceeeC--CCCCEEEEEEEEECHHHhccCCCEEE-EEEEcCCCCC
Confidence 87632100 00000111 1232 259999999998 67999 9999876543
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=150.66 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=115.4
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCce---
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRM--- 145 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~~--- 145 (977)
|.|.|..++..+. -.....+..++.++..|.... +..|+.++|.|.+.|.. ...|+|+|+|..+.....
T Consensus 1 ~~~~~~~~~~~~~---c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~ 77 (240)
T 4acp_A 1 GTKSCDKTHTCPP---CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 77 (240)
T ss_dssp -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred CceeeeeeecCCC---CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence 7899999886552 122222334445566666665 66799999999998753 348999999988753211
Q ss_pred ------EEeccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEec-
Q psy574 146 ------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEG- 214 (977)
Q Consensus 146 ------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g- 214 (977)
.+.....|.|.....+|.|.|+|.|.+..+. ....+.+ .+..+|.+.+.+.......|+.++|.|.+.+
T Consensus 78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf 157 (240)
T 4acp_A 78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF 157 (240)
T ss_dssp EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence 0111246788777788899999999998763 3444432 2346788777666554445999999999998
Q ss_pred CCCC-eEEEEEcCeeeeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 215 SPPP-STFWMLEGNRSLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 215 ~p~~-~i~W~~~g~~~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
+|.+ .+.|+++|..+..... ...+.|++. +.|.|...+..|.|.|+ |.+.+..-.
T Consensus 158 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~------s~L~v~~~~~~~~~~yt-C~V~h~~l~ 218 (240)
T 4acp_A 158 YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY------SKLTVDKSRWQQGNVFS-CSVMHEALH 218 (240)
T ss_dssp BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE------EEEEEEHHHHHTTCCEE-EEEECTTSG
T ss_pred eCCCcEEEEEECCEECCCcCccCceECCCCCEEEE------EEEEEChHHhCCCCEEE-EEEEECCCC
Confidence 4554 7999999987521100 112223222 36777777777899999 999998643
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=128.15 Aligned_cols=92 Identities=33% Similarity=0.556 Sum_probs=77.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||+.|... .|+.+..+ .+|.|.+++.+|+|.|+|+|.
T Consensus 13 pP~f~~~p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 89 (107)
T 3knb_B 13 PPCFLRFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAAS--ERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCC--SSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccce--eeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence 4789999999999999999999999 89999999999999999543 45555433 369999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCC
Q psy574 82 NVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P 100 (977)
|..|... ..+.|.|..+|
T Consensus 90 N~~G~~~-~~~~l~V~~pP 107 (107)
T 3knb_B 90 NAAGEAY-AAAAVTVLEPP 107 (107)
T ss_dssp ETTEEEE-EEEEEEEEC--
T ss_pred ECCCEEE-EEEEEEEEcCC
Confidence 9999754 56889998765
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=126.09 Aligned_cols=92 Identities=23% Similarity=0.457 Sum_probs=80.3
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a 80 (977)
..|.|...|.++.+.+|++++|.|.+ .|.|.|.|.|+|||+.|......|+.+... .+|.|.+++.+|+|.|+|.|
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 46889999999999999999999999 899999999999999997666667776643 36999999999999999999
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
.|..|.. +..+.|.|+
T Consensus 83 ~N~~G~~-~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSD-SATVNIHIR 98 (100)
T ss_dssp EETTEEE-EEEEEEEEE
T ss_pred EECCCEE-EEEEEEEEE
Confidence 9999974 466788876
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-14 Score=127.86 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=88.5
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEEecCCCCCc
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLLLTNLSAGI 710 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t 710 (977)
..+.|.+++|. +|.++++...+.++|.|+|++| ...+|.|.+|.|+|+..+. ............+.++|.+|+|++
T Consensus 9 ~~~~~~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 85 (119)
T 2ed7_A 9 PAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEA 85 (119)
T ss_dssp SSCCCSSSSCC-CCSCCEEEEECSSCEEEECCCC--SCCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSS
T ss_pred ccCCCCCCCCc-CCcceEEEecCCCEEEEEEeCC--CCCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCC
Confidence 44567788885 8899999999999999999999 5678999999999988653 333333345678999999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.|.|+|+|+|.+|.|++|+++.++|....
T Consensus 86 ~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 114 (119)
T 2ed7_A 86 MYTFRVVAYNEWGPGESSQPIKVATQPES 114 (119)
T ss_dssp EEEECCEEEESSCBCSCCCCEEEECCCCS
T ss_pred EEEEEEEEEcCCccCCCcCCEEEEeCCCC
Confidence 99999999999999999999999887654
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=145.45 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=107.4
Q ss_pred eCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCc---eEEeccceEEEc------cCccCCCeEEEEE
Q psy574 104 RGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDR---MSVLPSRSLQLS------DVRLEDAGEYVCE 169 (977)
Q Consensus 104 ~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~---~~~~~~~~L~I~------~v~~~D~G~Y~C~ 169 (977)
..|.... +.+|++++|.|.+.|.+ ...|.|+|++..+.... .....++.|.+. ....+|+|.|+|.
T Consensus 7 ~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~ 86 (207)
T 1l6x_A 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 86 (207)
T ss_dssp ECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred eCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEE
Confidence 3443333 37999999999998765 34999999998765431 122234455443 3334459999999
Q ss_pred EEeCCeeE--EEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEE
Q psy574 170 AENAVGKI--SASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 170 a~n~~g~~--~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.|..+.. .+.+.+ .+..+|.+...+.......|..++|.|.+.|. |. +.|.|+++|..+... ......
T Consensus 87 a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~-----~~~~~~ 161 (207)
T 1l6x_A 87 VSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY-----KTTPPV 161 (207)
T ss_dssp EECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE-----EECCCE
T ss_pred EEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCc-----cccCce
Confidence 99987753 333332 34567777665544333356679999999985 44 389999999876311 111111
Q ss_pred EccCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 244 ITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 244 ~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
...+|. +.|.|......|.|.|+ |.|.|....
T Consensus 162 ~~~~gt~~~~s~l~i~~~~~~~~g~Yt-C~a~n~~l~ 197 (207)
T 1l6x_A 162 LDSDGSFFLYSKLTVDKSRWQQGNVFS-CSVMHEALH 197 (207)
T ss_dssp ECTTSCEEEEEEEEEEHHHHHTTCCEE-EEEECTTSG
T ss_pred ECCCCCEEEEEEEEECHHHcCCCCEEE-EEEEcCCcC
Confidence 122332 25666666667899999 999998654
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=149.61 Aligned_cols=246 Identities=16% Similarity=0.136 Sum_probs=146.2
Q ss_pred EEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 199 RLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.+..|++++|.|.+.. +. .|.|+++|..... . .++ +|.|.+++..|+|.|+ |.+ .+...
T Consensus 17 ~~~~G~~v~l~C~~~~-~~-~i~W~~~~~~~~~------------~-~~~--~L~i~~~~~~d~G~Yt-C~~---~~~~~ 75 (306)
T 3d85_D 17 PDAPGEMVVLTCDTPE-ED-GITWTLDQSSEVL------------G-SGK--TLTIQVKEFGDAGQYT-CHK---GGEVL 75 (306)
T ss_dssp SSCCCEEEEEECSSSC-CS-SCEEEETTCCCCC------------E-ESS--EEEEEECSGGGCEEEE-EEE---TTEEE
T ss_pred cCccCCcEEEECCCCC-CC-cCEEEECCccccC------------C-CCC--EEEEEecCcCCCceEE-Eee---CCccc
Confidence 4558999999998873 22 8999999875321 0 134 9999999999999999 998 46666
Q ss_pred EEEEEEEECCCCCC-CCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcC-C---------CCcEEEe---
Q psy574 279 ARASLTVSGPDPNP-PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVG-S---------GPRVNVT--- 341 (977)
Q Consensus 279 ~~~~l~V~~~~~~~-pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~-~---------~~~~~~~--- 341 (977)
..+.|.|....... +..|...+.+ .. +...|.|.+.. .....|..++.... . .......
T Consensus 76 ~~~~l~v~~~~~~~~~t~i~~~~~~---pp-~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~~ 151 (306)
T 3d85_D 76 SHSLLLLHKKEDGIWSTDILKDQKE---PK-NKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAA 151 (306)
T ss_dssp EEEEEEEEEEETTEECCCSSCCCC-------CCCCCEEEBSSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEECCC
T ss_pred ceEEEEEEeccCCcceeeeecccCC---CC-CCCcceEEcCCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECCCC
Confidence 66666665310000 0001000000 00 12356676665 23456766553100 0 0000000
Q ss_pred --cCceEEEeccC-----------------CCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCC
Q psy574 342 --GDGSLVLTDVT-----------------KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402 (977)
Q Consensus 342 --~~~sl~I~~v~-----------------~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~ 402 (977)
....++|.+.. ....+.++|.|.|..|..+....+.+.. .+.|.||.
T Consensus 152 ~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~--------------iVkPdPP~ 217 (306)
T 3d85_D 152 TLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRD--------------IIKPDPPK 217 (306)
T ss_dssp EEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHH--------------HBCCCCCE
T ss_pred CCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehh--------------cEecCCCc
Confidence 00112222111 1246778999999999765554443321 15689999
Q ss_pred CCeEEeeCC-CceEEEEEcCCCCCCcc----cceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 403 KPTLVNQTA-NGLTLAWSRNNQIGSSS----LLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 403 ~~~v~~~~~-~sv~lsW~~p~~~~~~~----i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
++.+..... ..+.|+|.+|.. .+.+ ...|+|+|+..+.. .|... .....+++.| .+++.
T Consensus 218 ~l~~~~~~~~~~l~vsW~~P~~-~~~p~~~~~L~Y~vryr~~~~~-----------~~~~~-~~~~~ts~~l---~~~~~ 281 (306)
T 3d85_D 218 NLQLKPLKNSRQVEVSWEYPDT-WSTPHSYFSLTFCVQVQGKSKR-----------EKKDR-VFTDKTSATV---ICRKN 281 (306)
T ss_dssp EEEEEEC----CEEEEEECCTT-SCSCTTTSCEEEEEEEECC-----------------CE-EEESSSEEEE---CCCSS
T ss_pred eEEEEEecCCCcEEEEEcCCCC-CcCCCceeeEEEEEEEEECCCC-----------ccEEE-eeccccEEEE---eCCCe
Confidence 999887544 789999999875 2332 37999999876543 34433 3345566665 46999
Q ss_pred EEEEEEEEcCCCCCCCCCCCce
Q psy574 478 YTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
|.|+|||.|..|.|.+|.+|..
T Consensus 282 Y~vqVRa~~~~~~G~WSeWS~~ 303 (306)
T 3d85_D 282 ASISVRAQDRYYSSSWSEWASV 303 (306)
T ss_dssp CEEEEEEEESSSCCCCCCCEEE
T ss_pred EEEEEEeccCCCCCCCCCCCCC
Confidence 9999999999999999988764
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=130.17 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=89.6
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeee----EEEEEEEecCCcceEEEEecCCcCeE
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR----TYQIIVGGGNNSALINMTVSASTPTL 701 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~----~Y~v~~~~~~~~~~~~~~~~~~~~~~ 701 (977)
+..|....+.+.+..|+.+|.+|++...++++|.|+|++| ...++.|. +|+|+|+..+........+....+++
T Consensus 3 ~~~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p--~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~ 80 (123)
T 2edd_A 3 SGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADN--SVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSY 80 (123)
T ss_dssp SCCSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEECS--SSCSSCCCSCCCCEEEEEEETTCTTCCCCCEEESSSEE
T ss_pred CccCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEecCC--CCCcccccCcCceEEEEEEECCCCCccEEEEeCCceEE
Confidence 3456667777887888889999999999999999999988 45555554 99999988531111112233458999
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|.++.++|.+.
T Consensus 81 ~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~~~ 117 (123)
T 2edd_A 81 TATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117 (123)
T ss_dssp EEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECCCS
T ss_pred EecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEccCC
Confidence 9999999999999999999999999999999999876
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=147.22 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=116.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC----CCeEEEEeCC-----EEe---e--------------cCCCceEEEecC---
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG-----HPI---D--------------FENSKRLRLVDG--- 60 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k~g-----~~l---~--------------~~~~~r~~~~~~--- 60 (977)
.+|..+.+.+|++|+|.|.+ .+.+ ...+.|+|.. +.+ . ....+|+.+..+
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 83 (239)
T 3tv3_H 5 QESGPTLVEASETLSLTCAV-SGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPK 83 (239)
T ss_dssp EEESCSEECTTSCEEEEEEE-ESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGG
T ss_pred ecCCCEEEcCCCCEEEEEEE-cCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCC
Confidence 35778999999999999998 4444 4589999832 111 1 112467776543
Q ss_pred --cEEEEcCCCCCCCeEEEEEEEecCc------------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEE
Q psy574 61 --TNLAIQDSRKTDDGRYQCVVKNVAG------------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECS 122 (977)
Q Consensus 61 --g~L~I~~v~~~D~G~Y~C~a~n~~g------------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~ 122 (977)
.+|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+...+....+..|+.++|.|.
T Consensus 84 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~ 163 (239)
T 3tv3_H 84 NLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 163 (239)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEE
T ss_pred CEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEE
Confidence 2599999999999999999986531 011233466664 3466664444455667999999999
Q ss_pred ecc-cCce-EEEEEECCeeCCCC--------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 123 VGG-DAVL-TVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 123 v~g-~p~~-~i~W~k~~~~l~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.+ .|.+ .+.|++++..+... .........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 164 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 164 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 977 4544 58999998654210 1111122468899988888 9999999998766555555443
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=148.84 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=120.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC------------------CCCceEEec----cceEEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM------------------PEDRMSVLP----SRSLQL 155 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l------------------~~~~~~~~~----~~~L~I 155 (977)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. ..+|+.+.. +.+|.|
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 445666778899999999999999888889999999641 10 124555543 247999
Q ss_pred ccCccCCCeEEEEEEEeCCe------eEEEEEEEEEee------CCeEEec-CCCcEEeeCCeEEEEEEEecC-CC-CeE
Q psy574 156 SDVRLEDAGEYVCEAENAVG------KISASATLTVQM------APIVRER-PSDLRLEVGRDAVFLCGIEGS-PP-PST 220 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g------~~~~~~~L~V~~------~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~-~~i 220 (977)
.+++.+|+|.|+|.+.|..+ .....+.|.|.. +|.+... +....+.+|+.++|.|.+.+. |. +.|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 184 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 184 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence 99999999999999999421 122345677764 5655543 444455679999999999986 43 599
Q ss_pred EEEEcCeeeeecCC-----------CccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCcee
Q psy574 221 FWMLEGNRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSDL 278 (977)
Q Consensus 221 ~W~~~g~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~ 278 (977)
.|+++|..+..... ...+.+.+. +.|.|......| .|.|+ |.|.|......
T Consensus 185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~~~~Yt-C~v~n~~~~~~ 247 (279)
T 2wbj_D 185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 247 (279)
T ss_dssp EEEETTEECCTTEEECSSCEESSTTSTTCCEEEE------EEEECCSTTTTCTTCEEE-EEEEECCBCTT
T ss_pred EEEECCEECCCCcccccccccccccCCCCcEEEE------EEEEEChHHhccCCCEEE-EEEEeCCCCCC
Confidence 99999987532100 012223222 268888877765 67899 99999866543
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-14 Score=128.08 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=91.7
Q ss_pred CCCCCceEEeccC--CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 626 GKPSNLRAVRTLE--CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 626 g~~s~~~~~~T~~--~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|+.|..+.++|.. .+|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+...+.. +....++++|
T Consensus 1 G~~S~~~~~~T~~~~~~P~-~P~~l~~~~~~~~si~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~i 75 (116)
T 1x5g_A 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYMEKGTDKEQD--VDVSSHSYTI 75 (116)
T ss_dssp CCCCCCCCCSSCCCSSCCC-CCSSCEEEEEETTEEEEECCCC--SCCSSCCSEEEEEEEETTCCCCCC--EEECSSEEEE
T ss_pred CCCccCeEEEcCCCCCCCc-CCCccEEEecCCCEEEEEEeCC--CCCCCcccEEEEEEEECCCCccEE--EecCCceEEE
Confidence 4678888899953 5665 8899999999999999999999 568899999999999865332222 2346789999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 76 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 111 (116)
T 1x5g_A 76 NGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111 (116)
T ss_dssp CSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCCSS
T ss_pred cCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCCCC
Confidence 999999999999999999999999999999987754
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-14 Score=149.75 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=113.7
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-Cc-e-EEEEEECCeeC-CCCceE--Eec------cceEEEccCccCCCeEEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-AV-L-TVHWKRLGSAM-PEDRMS--VLP------SRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-p~-~-~i~W~k~~~~l-~~~~~~--~~~------~~~L~I~~v~~~D~G~Y~C~a 170 (977)
+..|....+.+|++++|.|.+.|. |. + .|.|++++..+ ...... ... ...|.|.++..+|+|.|+|.|
T Consensus 17 ~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~ 96 (231)
T 2w59_A 17 AIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV 96 (231)
T ss_dssp EECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred EeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence 456777778899999999999874 63 4 99999998877 322111 112 236999999999999999999
Q ss_pred EeCCeeEEEEEEEEE----eeCCeEEecCCCcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCCC---------
Q psy574 171 ENAVGKISASATLTV----QMAPIVRERPSDLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPGD--------- 235 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V----~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~~--------- 235 (977)
.|..+.......+.+ ..+|.+.+.+.......+..++|.|.+.|. | .+.|.|+|+|..+......
T Consensus 97 ~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 176 (231)
T 2w59_A 97 QHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEER 176 (231)
T ss_dssp ECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCT
T ss_pred EcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcc
Confidence 998754222222322 145666544322211235679999999985 4 3689999999876421100
Q ss_pred ------cc-ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 236 ------RV-DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 236 ------~~-~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.. +.|.+. +.|.|......|.|.|+ |.|.|.....
T Consensus 177 ~~~~~~~d~gt~~~~------s~L~i~~~~~~~~g~Yt-C~v~n~~l~~ 218 (231)
T 2w59_A 177 TANGAGGDGDTFFVY------SKMSVETAKWNGGTVFA-CMAVHEALPM 218 (231)
T ss_dssp TSCC---CCCCEEEE------EEEEEEHHHHHTTCCEE-EEEECTTSTT
T ss_pred cccccCCCCCeEEEE------EEEEEeHHHcCCCCcEE-EEEEcCCCCC
Confidence 01 122222 37889988889999999 9999987643
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=142.62 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=111.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-----cCCCceEEEecC------cEEEEcCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-----FENSKRLRLVDG------TNLAIQDSRK 70 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-----~~~~~r~~~~~~------g~L~I~~v~~ 70 (977)
.+...|..+.+.+|++|+|.|.+ .+.+ +.|.|+|+. . .+- ....+|+.+..+ .+|.|.+++.
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~-~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNF-TTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEE-SSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred ccEECCCeEEEccCCcEEEEEEE-eCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 45677888999999999999998 3433 489999842 2 221 112457776643 4799999999
Q ss_pred CCCeEEEEEEEecCc---------e-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCe
Q psy574 71 TDDGRYQCVVKNVAG---------T-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGS 138 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g---------~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~ 138 (977)
+|+|.|.|.+.+..+ . .....+.|.|...+.....| .+.+..+ .+.|.|.+.|. |. +.|.|+++ .
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~ 157 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K 157 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence 999999999988642 1 11234578887532222222 2222222 37999999764 54 79999999 6
Q ss_pred eCCCCc--eEEeccceEEEccCcc-CCCeEEEEEEEeCCeeE
Q psy574 139 AMPEDR--MSVLPSRSLQLSDVRL-EDAGEYVCEAENAVGKI 177 (977)
Q Consensus 139 ~l~~~~--~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~ 177 (977)
.+.... .....++.+.+..... +|.|.|+|.+.|..+..
T Consensus 158 ~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 158 KIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred cccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence 664322 2223567777766554 67899999999987653
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=147.77 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=111.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeE--EEEeCC-----EEe--------------ecCCCceEEEecCc-----
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTL--VWKKNG-----HPI--------------DFENSKRLRLVDGT----- 61 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v--~W~k~g-----~~l--------------~~~~~~r~~~~~~g----- 61 (977)
.+|..+.+.+|++|+|.|.+ .+. +...+ .|+|.. +.+ .....+|+.+..+.
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 83 (232)
T 3qhz_H 5 RESGPALVKPTQTLTLTCSF-SGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQV 83 (232)
T ss_dssp EEECCSEECTTSCEEEEEEE-ESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEE
T ss_pred EcCCCEEECCCCcEEEEEEE-eCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEE
Confidence 35667899999999999998 332 22344 999832 111 01123577776432
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-C-c
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-A-V 128 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p-~ 128 (977)
+|.|.+++.+|+|.|.|.+.+..+ ......+.|.|. .+|.+...+....+..|+.++|.|.+.+. | .
T Consensus 84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~ 163 (232)
T 3qhz_H 84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 163 (232)
T ss_dssp EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence 599999999999999999987531 112334567775 45666644444456679999999999764 4 3
Q ss_pred eEEEEEECCeeCCCC--------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 129 LTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 129 ~~i~W~k~~~~l~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
..+.|++++..+... .........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 468899998643210 0011122468899998889 9999999998876655555543
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=146.94 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=114.9
Q ss_pred eecccceEEeCCCcEEEEEECCC-CCCCCeEEEEeC--CE---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKN--GH---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~--g~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
..+|..+.+.+|++|+|.|.+.. ..+...+.|+|. +. .+ .....+|+.+..+ .+|.|
T Consensus 3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 82 (248)
T 3u2s_H 3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM 82 (248)
T ss_dssp EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence 45788899999999999999832 134568999983 21 11 0122467777543 25999
Q ss_pred cCCCCCCCeEEEEEEEecC---------------------ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA---------------------GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFE 120 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---------------------g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~ 120 (977)
.+++.+|+|.|.|.+.+.. .......+.|.|. .+|.+...+....+..|+.++|.
T Consensus 83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~ 162 (248)
T 3u2s_H 83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALG 162 (248)
T ss_dssp CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEE
T ss_pred CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEE
Confidence 9999999999999998742 1112234567776 34566544444455679999999
Q ss_pred EEecc-cC-ceEEEEEECCeeCCC--------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 121 CSVGG-DA-VLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 121 C~v~g-~p-~~~i~W~k~~~~l~~--------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|.+.+ .| ...+.|++++..+.. ..........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 99976 45 467999999864321 01111122468888888888 9999999998766554444443
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=127.31 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=92.6
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEE-EecCcEEEEEeeCCCCCCC-CeeeeEEEEEEEecCC-cceEEEEecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPV-LLNATSVLLKWKPPPVGTH-NGVIRTYQIIVGGGNN-SALINMTVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~-~~~~~sv~v~W~~p~~~~~-ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~ 700 (977)
|.|++|..+.++|..++|. +|.++.+. ..+.++|.|+|++| ... +..|.+|.|+|+..+. ..+... ..+..+.
T Consensus 1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~~sv~l~W~~p--~~~gg~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~ 76 (120)
T 2crm_A 1 GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPP--KDNGGATINKYVVEMAEGSNGNKWEMI-YSGATRE 76 (120)
T ss_dssp CCCTTCSCCSCCSCCCCCC-CCCCCEEEEEEETTEEEEECCCC--TTCCSSCCCEEEEEEEESSSSCCCEEE-ECSSCSE
T ss_pred CCCCCcCCEEEEeCCCCCC-CCCCCEEeeccCCCEEEEEECCC--CcCCCCeeeEEEEEEccCCCCcCCEEE-EeccccE
Confidence 5688999999999999986 67777776 77889999999998 444 4579999999988653 334333 3467889
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|+.+.++|....
T Consensus 77 ~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~ 115 (120)
T 2crm_A 77 HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVS 115 (120)
T ss_dssp EEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCCCS
T ss_pred EEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCCCC
Confidence 999999999999999999999999999999988887654
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-14 Score=143.08 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=111.5
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccCc
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDVR 159 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v~ 159 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5667899999999999998764 5789999863 211 124555542 2489999999
Q ss_pred cCCCeEEEEEEEeCCe---eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeee
Q psy574 160 LEDAGEYVCEAENAVG---KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSL 230 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~ 230 (977)
.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 166 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD 166 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence 9999999999998642 122346788873 4555544433445789999999999886 777 999999986532
Q ss_pred ecCCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 231 IYPGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
...... .+.+.+. +.|. ....+| |.|+ |.|.|..+.....
T Consensus 167 ~~~~~~~~~~g~~~~~------s~L~--~~~~~~-g~yt-C~v~n~~~~~~~~ 209 (215)
T 1c5d_H 167 VHTFPAVLQSGLYTLT------SSVT--SSTWPS-QTVT-CNVAHPASSTKVD 209 (215)
T ss_dssp CCBCCCEEETTEEEEE------EEEE--ESSTTT-SCCE-EEEEEGGGTEEEE
T ss_pred eEecCcccCCCCEEEE------EEEe--cccCCC-CeEE-EEEEeCCCCccEE
Confidence 110000 0112211 1333 444356 9999 9999998876443
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=126.54 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=80.9
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCee-eeEEEEEEEecCCcceE-E-EE--ecCCcCeEEecCCCCCc
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-IRTYQIIVGGGNNSALI-N-MT--VSASTPTLLLTNLSAGI 710 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~-i~~Y~v~~~~~~~~~~~-~-~~--~~~~~~~~~l~~L~p~t 710 (977)
+.+++|+. |.++.+...+.+ +.|+|++| ...||. |.+|.|+|+..+...+. . .. ..+..++++|.+|+|++
T Consensus 2 ~~~~~P~~-P~~~~~~~~~~~-v~l~W~~P--~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 77 (105)
T 2haz_A 2 SHMDTPSS-PSIDQVEPYSST-AQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET 77 (105)
T ss_dssp CCCCCCCC-CEEEEEEECSSC-EEEEEECC--SCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTC
T ss_pred CCCCCCcC-CCCCEEEEcCCc-EEEEEcCC--cccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCC
Confidence 35678875 899999888877 99999999 788888 99999999986533221 1 12 22357899999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.|.|+|+|+|.+|.|++|+++.|+|.+
T Consensus 78 ~Y~~rV~A~n~~G~g~~S~~~~~~T~p 104 (105)
T 2haz_A 78 TYAVRLAALNGKGLGEISAASEFKTQP 104 (105)
T ss_dssp EEEEEEEEEETTEECCCCCCEEEECCC
T ss_pred EEEEEEEEEcCCccCCCcCCEeeEEec
Confidence 999999999999999999999998854
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=142.98 Aligned_cols=173 Identities=13% Similarity=0.240 Sum_probs=116.2
Q ss_pred cccceEEeCCCcEEEEEECCC-CCCCCeEEEEeCC--E---Ee------------ecCCCceEEEecCc-----EEEEcC
Q psy574 11 QPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNG--H---PI------------DFENSKRLRLVDGT-----NLAIQD 67 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~g-----~L~I~~ 67 (977)
+|..+.+.+|++|+|.|.+.. ..+...+.|+|.. . .+ .....+|+.+..++ +|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (230)
T 3n9g_H 6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS 85 (230)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 455799999999999999832 1345689999731 1 11 01123577765433 499999
Q ss_pred CCCCCCeEEEEEEEecCc-------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-C-ceEEEEE
Q psy574 68 SRKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-A-VLTVHWK 134 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g-------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p-~~~i~W~ 134 (977)
++.+|+|.|.|.+.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.+. | .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 999999999999987531 112234567775 34555543444445789999999999764 4 457999
Q ss_pred ECCeeCCCCc----eEEec------cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 135 RLGSAMPEDR----MSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 135 k~~~~l~~~~----~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
++..+.... ..... ...|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 655443211 11111 2479999999999 99999999988766555555554
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=147.91 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=101.4
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--eC------------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--AM------------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~l------------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|... .+ ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4566889999999999998765 67899999631 11 124555542 247999999
Q ss_pred ccCCCeEEEEEEEeCCe-------------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-e
Q psy574 159 RLEDAGEYVCEAENAVG-------------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-S 219 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-------------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~ 219 (977)
+.+|+|.|.|.+.+..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~ 166 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 166 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCE
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcE
Confidence 99999999999998754 122345788874 4655543333346789999999999885 777 9
Q ss_pred EEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 220 TFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 220 i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
+.|++++..+..... ...+.+... +.|.|..+...| |.|+ |.|.|......
T Consensus 167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~------s~L~I~~~~~~~-g~Yt-C~v~n~~~~~~ 221 (257)
T 3bn9_D 167 VSWNSGALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTK 221 (257)
T ss_dssp EEETTTTCCSSCEECCCEECTTSCEEEE------EECCCC--------CEE-EEEEEGGGTEE
T ss_pred EEEeeCCCcCCcEecCCeEcCCCCEEEE------EEEEEcccccCC-CeEE-EEEEecCCCcC
Confidence 999999875311100 112233322 368888888778 9999 99999765443
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-14 Score=127.93 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=93.5
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|+.|..+.++|.+++|. +|.++++...+.++|.|+|++|. . +.|.+|+|+|+..+........ ....+.++|
T Consensus 1 G~g~~S~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~--~--~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~i 74 (115)
T 1x5z_A 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR--S--DTIANYELVYKDGEHGEEQRIT-IEPGTSYRL 74 (115)
T ss_dssp CCCCCCCCCCCCCCSCCCC-CCEEEEEECSSSSEEEEEEECCS--C--CCCCEEEECBEESSSCCCBCCE-ECSSSEEEE
T ss_pred CCCCCCCCEEEECCCCCCC-CCccCEeeeCCCCEEEEEEcCCC--C--CCccEEEEEEEeCCCCCceEEe-cCCCcEEEE
Confidence 5688899999999999997 88999999989999999999993 3 4899999999886533222222 345799999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 75 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 110 (115)
T 1x5z_A 75 QGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS 110 (115)
T ss_dssp ECCCTTCEEEECEEEECSSCEEEECCCEEEECCCCC
T ss_pred CCCCCCCeEEEEEEEECCCcccCCCcCEEEecCCCC
Confidence 999999999999999999999999999999988765
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=128.69 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=90.1
Q ss_pred eEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
++.++++...+.++|.|+|++| .++.|.+|+|+|+..+................++++|.+|+|++.|.|+|+|+|
T Consensus 21 ~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 100 (134)
T 2edx_A 21 PPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHT 100 (134)
T ss_dssp CSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEE
T ss_pred CCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence 3478999999999999999998 467899999999988753221111112236778999999999999999999999
Q ss_pred cceeCCCCCceEEeccCCCCCCCCceeEEEEec
Q psy574 622 GSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN 654 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~ 654 (977)
..|.|++|..+.++|.+++|+.+|.++++...+
T Consensus 101 ~~G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~s 133 (134)
T 2edx_A 101 DVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133 (134)
T ss_dssp TTBCCCCCCCEEEECCCCSSCCCCCCCCCCCCC
T ss_pred CCCcCCCCCCEEeecCCCCCCCCCceeEEEEcc
Confidence 999999999999999999998899999876554
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=121.92 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=84.8
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
+.+++|. +|.++++...+.++|.|+|++| ...+|.|++|+|+|+..+...+..... ..++++|.+|+|++.|.|+
T Consensus 3 s~~~~P~-~P~~l~~~~~~~~si~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~ 77 (106)
T 2ed8_A 3 SGSSGPG-PVENLQAVSTSPTSILITWEPP--AYANGPVQGYRLFCTEVSTGKEQNIEV--DGLSYKLEGLKKFTEYSLR 77 (106)
T ss_dssp CCCCCCC-CCEEEEEECSSTTEEEEEEECC--SSCSSCCCEEEEEEEETTTCCEEEEEE--CSSCEEEESCCTTCEEEEE
T ss_pred CCCCCCc-CCceeEEEecCCCEEEEEECCC--CCCCCCeeEEEEEEEECCCCceEEEeC--CccEEEECCCCCCCEEEEE
Confidence 4567887 8899999999999999999999 577899999999998865443333333 4789999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeecCCC
Q psy574 716 LAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|.+|.|++|.++.++|.+..
T Consensus 78 V~A~n~~G~g~~S~~~~~~T~~~~ 101 (106)
T 2ed8_A 78 FLAYNRYGPGVSTDDITVVTLSDS 101 (106)
T ss_dssp EEEECSSCEEEECCCEEEECCCCC
T ss_pred EEEEeCCccCCCcCCEEEEcCCCC
Confidence 999999999999999999997655
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=149.39 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=167.6
Q ss_pred CCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCC--CCCCCCCCCcccEEEec---eecCcCeEEEEccCC
Q psy574 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLP--SSSPSGDTATATWVRVA---TNVPSPILTVTNLTV 474 (977)
Q Consensus 400 ~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~--~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~p 474 (977)
+|.++.|.......+++.|.++.. ......|.+.|+..... ...|... ....|.... -....+.+....+.-
T Consensus 5 ~~~~l~C~~~~~~~~~C~W~~~~~--~~~~~~~~l~y~~~~~~~~~~~C~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~ 81 (419)
T 2gys_A 5 PLQTLRCYNDYTSHITCRWADTQD--AQRLVNVTLIRRVNEDLLEPVSCDLS-DDMPWSACPHPRCVPRRCVIPCQSFVV 81 (419)
T ss_dssp HHHHCEEEECSSSEEEEEEEEEHH--HHTTCCEEEEEEEETTEEEECCEEEC-SCCTTSCCCSSSEEEEEEEEECSCCCT
T ss_pred cCCCceEEeCCCEEEEEEeeCCcC--CCCcccEEEEeecCCcCCccceeccc-cCcccccCCCCCccccEeEeCCcceee
Confidence 356778887777899999998765 22235688877642211 0000000 000111110 001233344455666
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
...|.|+|+|.|..|.. ..+.. .....|. | |.+|++..
T Consensus 82 ~~~~~~~v~~~~~~~~~------~~~~~---~~~v~p~---------p------------------------P~~l~v~~ 119 (419)
T 2gys_A 82 TDVDYFSFQPDRPLGTR------LTVTL---TQHVQPP---------E------------------------PRDLQIST 119 (419)
T ss_dssp TCEEEEEEEESSCCCEE------EEEEG---GGSBCCC---------C------------------------CEEEEEEE
T ss_pred ecccEEEEeCCcccccc------ceEcH---HHcccCC---------C------------------------CCceEEEe
Confidence 77999999997755531 11111 1111111 2 36788887
Q ss_pred eCCCeEEEEEEecCC--------CccceEEEEEEecCCCCCceEEEEeecCccceEEEC--CCCCCcEEEEEEEEeecc-
Q psy574 555 MTSTSVKLTWEILNT--------DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFLVPFFGS- 623 (977)
Q Consensus 555 ~~~tsv~lsW~~p~~--------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~- 623 (977)
.+ +.+.|+|++|.. .....|.|+|+..+ ..|....... .....+.+. +|.|++.|+|+|+|.+..
T Consensus 120 ~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~--~~w~~~~~~~-~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g 195 (419)
T 2gys_A 120 DQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ--DSWEDAAILL-SNTSQATLGPEHLMPSSTYVARVRTRLAPG 195 (419)
T ss_dssp ET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT--SCSTTCEEEE-ESSSEEEECTTTCCTTCEEEEEEEEEECTT
T ss_pred cC-CeEEEEECCCccccccchhccCceEEEEEEccCC--CChhheeeec-ccceEEEechhhcCCCCeEEEEEEEecCCC
Confidence 76 699999999922 23568999999886 5665443321 234556666 999999999999999964
Q ss_pred --eeCC---CCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-c-----ceEE-
Q psy574 624 --VDGK---PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-S-----ALIN- 691 (977)
Q Consensus 624 --g~g~---~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~-----~~~~- 691 (977)
+.|. +|..+.+.|.++.|. +|.++.+...+.+++.+.|+++ ....+. .+|.|+|+.... . ....
T Consensus 196 ~~~~G~wS~WS~~~~~~t~~~~~~-~p~~l~c~~~~~~~l~c~W~~~--~~~~~~-~~y~l~y~~~~~~g~~~~~~~~~C 271 (419)
T 2gys_A 196 SRLSGRPSKWSPEVCWDSQPGDEA-QPQNLECFFDGAAVLSCSWEVR--KEVASS-VSFGLFYKPSPDAGSAVLLREEEC 271 (419)
T ss_dssp SSCCBCCCCCCCCEEEECCCCCTT-SCEEEEEEECSSSEEEEEEEEE--HHHHTT-CCEEEEEECC-----CCCCCCEEC
T ss_pred CCCCcccCCCCCceeeeccccccC-CCceEEEEECCceEEEeEEECC--CCCCCc-eeEEEEEEecCccccccCcccccC
Confidence 3344 567789999998864 8899999988889999999986 221221 459999986421 1 1111
Q ss_pred --EEec-C------CcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 692 --MTVS-A------STPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 692 --~~~~-~------~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
.... . ....+.+.+|.+.+.|.|+|.|.+..|
T Consensus 272 ~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~ 312 (419)
T 2gys_A 272 SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEK 312 (419)
T ss_dssp CCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCE
T ss_pred CCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCc
Confidence 1111 1 123567888999999999999975443
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=162.38 Aligned_cols=166 Identities=22% Similarity=0.294 Sum_probs=123.5
Q ss_pred CceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC-------------CCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 107 KDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP-------------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~-------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+..+.+|++++|.|.+ .+.|.+.|.|+|++..+. .++..+..+++|.|.+++.+|+|.|+|.+.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 45678999999999999 788999999999876321 2356666778999999999999999999999
Q ss_pred CCeeE-EEEEEEEEeeCCe-EEecCCCcEEeeCCeE-EEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEEE----EE
Q psy574 173 AVGKI-SASATLTVQMAPI-VRERPSDLRLEVGRDA-VFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQA----EI 244 (977)
Q Consensus 173 ~~g~~-~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v-~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~~----~~ 244 (977)
..+.. ...+.|.|..+|. ..+.+....+.+|... .|.|.+.+ .|.+.|.|+++|..+... ..++.+ ..
T Consensus 454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~----~~~~~~~~~~~~ 529 (581)
T 3o3u_N 454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN----EKGVSVKEQTRR 529 (581)
T ss_dssp TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT----STTEEEEEEEEE
T ss_pred CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC----CCeEEEEeeeEE
Confidence 98876 7889999986442 2333344446666555 66999988 699999999999877431 122211 11
Q ss_pred c-cCC----ceEEEEeecc-cCCCCeEEEEEEEcCCCce
Q psy574 245 T-SDG----MNLLKIQNVS-RTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 245 ~-~~g----~s~L~I~~v~-~~d~G~Y~~C~a~n~~g~~ 277 (977)
. ..| .++|.|..++ .++.|.|+ |.|.|..+..
T Consensus 530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~-C~~~n~~~~~ 567 (581)
T 3o3u_N 530 HPETGLFTLQSELMVTPARGGDPRPTFS-CSFSPGLPRH 567 (581)
T ss_dssp CTTTCCEEEEEEEEECCCTTSCSCCCEE-EEEECSSCSS
T ss_pred cCCCceEEEEEEEEEEeccccCCCceEE-EEEeccCCCC
Confidence 1 122 2579999998 44588999 9999986543
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=126.38 Aligned_cols=101 Identities=24% Similarity=0.398 Sum_probs=86.5
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|+.+|.++++...+.++|.|+|++|+....+|.|.+|+|+|+..+... ...+....++++|.+|+|++.|.|
T Consensus 2 ~t~e~~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~ 79 (103)
T 2edy_A 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ--ELQNITTDTRFTLTGLKPDTTYDI 79 (103)
T ss_dssp TTTCCCCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCC--EEEEEESSSCCEECSCCTTCCEEE
T ss_pred CCCCCCCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCc--cEEEcCCcceEEEcCCCCCCEEEE
Confidence 467888888999999988889999999999976678899999999998865432 233455788999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
+|+|+|.+|.|++|+++.++|.+
T Consensus 80 ~V~A~n~~G~g~~S~~~~~~T~p 102 (103)
T 2edy_A 80 KVRAWTSKGSGPLSPSIQSRTMP 102 (103)
T ss_dssp ECCEECSSCBCCCCCCCCCCCCC
T ss_pred EEEEECCCCCCCCCCCEEEEecc
Confidence 99999999999999999887753
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=124.30 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCee----eeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV----IRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~----i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+..|+.+|.+|++...++++|.|+|.+|. ..++. +.+|+|+|+...........+..+.++++|.+|+|+|.|.
T Consensus 5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~--~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~gL~P~T~Y~ 82 (113)
T 1x5j_A 5 SSGPMMPPVGVQASILSHDTIRITWADNS--LPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYE 82 (113)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEECTT--SCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEEC
T ss_pred cCCCCCCCcceEEEEecCCEEEEEecCCC--CccccccCcCceEEEEEEECCCCCeEEEEEecCcCEEEeCCCCCCcEEE
Confidence 45677799999999999999999999994 33444 4599999987432223334455678899999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
|+|+|+|.+|.|++|.++.++|.+.
T Consensus 83 f~V~A~~~~G~g~~S~~v~~~T~~~ 107 (113)
T 1x5j_A 83 FSVMVTKGRRSSTWSMTAHGTTFEL 107 (113)
T ss_dssp CEEEEECSSCBCCCCCCCCEECCCS
T ss_pred EEEEEecCCccCCCcccEEeeccCC
Confidence 9999999999999999999999876
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=144.12 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=114.8
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC----------------CCC-ceEEeccce--EEEccCccC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM----------------PED-RMSVLPSRS--LQLSDVRLE 161 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l----------------~~~-~~~~~~~~~--L~I~~v~~~ 161 (977)
...|....+.+|++++|.|.+.+.+.+.+.|+|.. ... ..+ |+.+..+.. |.|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 34567788999999999999988888999999831 110 011 454443322 999999999
Q ss_pred CCeEEEEEEEeCCe------eEEEEEEEEEe------eCCeEEec-CCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 162 DAGEYVCEAENAVG------KISASATLTVQ------MAPIVRER-PSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 162 D~G~Y~C~a~n~~g------~~~~~~~L~V~------~~p~~~~~-p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
|+|.|+|.+.+..+ .....+.|.|. .+|.+... +....+..|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 164 (253)
T 3to4_D 85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (253)
T ss_dssp SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence 99999999986543 23344567775 45555443 33334446789999999988 6666 89999999
Q ss_pred eeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCC
Q psy574 227 NRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAG 275 (977)
Q Consensus 227 ~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g 275 (977)
..+...... ..+.+.+. +.|.|.....+| .|.|+ |.|.|...
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~~~~yt-C~v~h~~l 218 (253)
T 3to4_D 165 KEVHSGVSTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGL 218 (253)
T ss_dssp EEECTTEEECSSCEESSTTCTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCB
T ss_pred EECCCceecccccccccccCCCCCEEEE------EEEEECHHHhccCCCEEE-EEEEeCCC
Confidence 876321100 12333333 278888888887 77999 99998754
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.4e-13 Score=119.38 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=78.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEec---cceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP---SRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.||.|...|.++.+.+|+++.|.|.+.|.|.|.|.|+|++..+... ++.+.. ..+|.|.+++.+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 3678888899999999999999999999999999999999998643 455442 2479999999999999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy574 172 NAVGKISASATLTVQ 186 (977)
Q Consensus 172 n~~g~~~~~~~L~V~ 186 (977)
|..|..+..+.|.|.
T Consensus 84 N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 84 NEFGSDSATVNIHIR 98 (100)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEE
Confidence 999999999999986
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=126.01 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=86.3
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe-cCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV-SASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~l~ 704 (977)
+..+..+.++|.+++|. +|.++++...+.++|.|+|++|. .. |.|++|+|+|+..+...+....+ ....+.++|.
T Consensus 3 s~~~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~--~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 78 (118)
T 2yrz_A 3 SGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR--CE-RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVE 78 (118)
T ss_dssp CCCCSCCTTSSSCSCCC-CCCCCEECCCBTTEEEEECCCCC--CS-SCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEE
T ss_pred CCCCCcceeecCCCCCC-CCCceEEEeCCCCEEEEEeCCCC--CC-CCccEEEEEEEECCCCceEEEEcCCCCcCEEEeC
Confidence 44556678899999997 78899998889999999999984 33 79999999999865433444433 4678999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCCc-eEEee
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSRP-ALLSL 735 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~~-~~~~t 735 (977)
+|+|++.|.|+|+|+|.+|.|++|+. +.+.+
T Consensus 79 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t 110 (118)
T 2yrz_A 79 DLLPNHSYVFRVRAQSQEGWGREREGVITIES 110 (118)
T ss_dssp SCCTTCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred CCCCCCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence 99999999999999999999999984 44433
|
| >1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=139.16 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=121.6
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcc-cceEEEEEeecCCCCCCCCCCCCcccEEEece----ecCcCeEEEE
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSS-LLGYQVEMYSRPLPSSSPSGDTATATWVRVAT----NVPSPILTVT 470 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~-i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~----~~~~~~~~i~ 470 (977)
.+|++|.++.+......+++++|.++.. ++.+ ...|.+.|....... ....|..+.. ....+.+...
T Consensus 28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~-~~~~~~~~y~l~Y~~~~~~~-------~~~~~~~C~~~~~~~~~~C~~~~~ 99 (236)
T 1axi_B 28 NSSGEPKFTKCRSPERETFSCHWTDEVH-HGTKNEGPIQLFYTRRNTQE-------WTQEWKECPDYVSAGENSCYFNSS 99 (236)
T ss_dssp ----CCCEEEEEBSSSSCEEEEECCC---------CSCEEEEEECC-------------CCEECSCSSTTCTTEEEECGG
T ss_pred CCCCCCcCCeEEeCCCCEEEEEecCCCC-CCCCCCceEEEEEEeCCCCc-------CCCceeeCCCCCCCCCEEEEECCc
Confidence 4689999998888888999999997554 4433 368888887543220 0012333321 2234556677
Q ss_pred ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEE
Q psy574 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELT 550 (977)
Q Consensus 471 ~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l 550 (977)
+|.+++.|.|+|.| | .+.+. ...+ .......|+ | |.++
T Consensus 100 ~l~~~~~Y~~~V~a-N-~~~s~------~~~~-~~~~~v~p~---------p------------------------P~~l 137 (236)
T 1axi_B 100 FTSIAIPYCIKLTS-N-GGTVD------EKCF-SVDEIVQPD---------P------------------------PIAL 137 (236)
T ss_dssp GCCSSSEEEEEEEE-T-TEEEE------EEEE-EGGGGBCCC---------C------------------------CEEE
T ss_pred CCcccceEEEEEEE-C-CccCC------CeEe-ecccccccC---------C------------------------Cccc
Confidence 89999999999999 8 22221 1111 011111122 2 2566
Q ss_pred E--eeEeCC----CeEEEEEEecC-----CC-ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 551 E--VKPMTS----TSVKLTWEILN-----TD-YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 551 ~--~~~~~~----tsv~lsW~~p~-----~~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
. +...+. ..|.|+|++|. ++ .+..|.|+|+..+ ...|..... ...+++.|.+|+|++.|.|+|+
T Consensus 138 ~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~-~~~w~~~~~---~~~~~~~l~~L~p~t~Y~vqVR 213 (236)
T 1axi_B 138 NWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN-ETKWKMMDP---ILTTSVPVYSLKVDKEYEVRVR 213 (236)
T ss_dssp EEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT-CSSCEECCC---BSSSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECC-CCceEEEec---cCCCEEEEeccCCCCEEEEEEE
Confidence 4 444433 35999999993 23 5789999999987 467765432 3468899999999999999999
Q ss_pred Eeecce--eCCCCCceEEeccC
Q psy574 619 PFFGSV--DGKPSNLRAVRTLE 638 (977)
Q Consensus 619 a~n~~g--~g~~s~~~~~~T~~ 638 (977)
|.+..| .|.+|..+.++|.+
T Consensus 214 a~~~~gg~ws~WS~~~~~~~p~ 235 (236)
T 1axi_B 214 SKQRNSGNYGEFSEVLYVTLPQ 235 (236)
T ss_dssp EEETTSSCCCCCCCCEEECCCC
T ss_pred EEECCCCCcCCCCCCEEEECCC
Confidence 999888 88999999998875
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=120.31 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=80.5
Q ss_pred EeccCCCCCCCCceeEEEEecCcEEEEEe--eCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCce
Q psy574 634 VRTLECEPSGVPQLTDPVLLNATSVLLKW--KPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711 (977)
Q Consensus 634 ~~T~~~~P~~~P~~v~~~~~~~~sv~v~W--~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~ 711 (977)
..|.+++|+ +|.++++...+.++|.|+| .+| ...||. .+|+|+|+... ... ...+. .+.++|.+|+|++.
T Consensus 3 ~~T~~~~P~-~p~~l~~~~~~~~sv~l~W~~~~P--~~~ng~-~~Y~v~y~~~~-~~~-~~~~~--~~~~~i~~L~p~t~ 74 (107)
T 1x5a_A 3 SGSSGAESL-SGLSLKLVKKEPRQLELTWAGSRP--RNPGGN-LSYELHVLNQD-EEW-HQMVL--EPRVLLTKLQPDTT 74 (107)
T ss_dssp CTTTTCCCC-CSCCCCEEEEETTEEEEECCCCCS--SCCSSC-CEEEEEEECSS-CEE-EEEES--SSEEEEESCCSSCE
T ss_pred ccCCCCCCC-CCCceEEEecCCCEEEEEECCCCC--CCCCCc-eEEEEEEEeCC-CCc-eEEEe--cceEEECCCCCCCE
Confidence 357888887 6679999999999999999 777 778999 99999998852 111 12222 23399999999999
Q ss_pred EEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 712 YSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 712 Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 75 Y~f~V~A~~~~G~g~~S~~~~~~T~~~~ 102 (107)
T 1x5a_A 75 YIVRVRTLTPLGPGPFSPDHEFRTSPPS 102 (107)
T ss_dssp EEEEEEEECSSSCCCCCCCEEEECCCCS
T ss_pred EEEEEEEECCCccCCCCCCEEEEECCCC
Confidence 9999999999999999999999987654
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=140.27 Aligned_cols=170 Identities=18% Similarity=0.245 Sum_probs=113.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--e---C-------------CCCceEEec----cceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--A---M-------------PEDRMSVLP----SRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~---l-------------~~~~~~~~~----~~~L~I~~v~ 159 (977)
+...|..+.+.+|++++|.|.+. .+.+.+.|+|++. . + ..+|+.+.. +.+|.|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34567788999999999999995 4578999999641 1 0 134555542 3589999999
Q ss_pred cCCCeEEEEEEEeCCe-----eEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEc
Q psy574 160 LEDAGEYVCEAENAVG-----KISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLE 225 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~ 225 (977)
.+|+|.|+|.+.+..+ .....+.|.|.. +|.+.. .|....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 9999999999998631 122345677764 565554 3555567789999999999986 655 8999999
Q ss_pred CeeeeecCCCccccEEEEEccCCc----eEEEEeecccCC-CCeEEEEEEEcCCCc
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA-APLIILCLGVNAAGS 276 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d-~G~Y~~C~a~n~~g~ 276 (977)
|..+.... .... ......++. +.|.|......| .|.|+ |.|.|....
T Consensus 161 g~~~~~~~--~~~~-~~~~~~~g~~~~~s~L~i~~~~~~d~~~~yt-C~v~~~~l~ 212 (238)
T 1bec_A 161 GKEVHSGV--STDP-QAYKESNYSYCLSSRLRVSATFWHNPRNHFR-CQVQFHGLS 212 (238)
T ss_dssp TEEECTTE--EECS-SCEEEETTEEEEEEEECCCHHHHTCTTCEEE-EEEEECCCC
T ss_pred CEECCCce--eccc-ceEeCCCCCEEEEEEEEEcHHHhccCCCeEE-EEEEcCCCC
Confidence 98763210 0000 001111232 245555555444 67899 999997543
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=140.07 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=117.6
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--e---C-------------CCCceEEec----cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--A---M-------------PEDRMSVLP----SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~---l-------------~~~~~~~~~----~~~L~I~~v 158 (977)
.+...|..+.+.+|++++|.|.+. .+.+.+.|+|+.. . + ..+|+.+.. +.+|.|.++
T Consensus 5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence 455667888999999999999995 4578999999631 1 0 134665542 358999999
Q ss_pred ccCCCeEEEEEEEeCC---eeEEEEEEEEEe------eCCeEEec-CCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 159 RLEDAGEYVCEAENAV---GKISASATLTVQ------MAPIVRER-PSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~---g~~~~~~~L~V~------~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
+.+|+|.|.|.+.+.. ......+.|.|. .+|.+... |....+.+|+.++|.|.+.+. |.+ .+.|+++|
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 9999999999999861 122233457775 35666553 444456689999999999985 654 89999999
Q ss_pred eeeeecCC-----------CccccEEEEEccCCceEEEEeecccC-CCCeEEEEEEEcCCCcee
Q psy574 227 NRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 227 ~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~~ 278 (977)
..+..... ...+.+.+. +.|.|...... |.|.|+ |.+.|......
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~------s~L~i~~~~~~d~~~~yt-C~v~~~~l~~~ 220 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 220 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCBCTT
T ss_pred EECCCCcccccccccccccCCCCCEEEE------EEEEECHHHhccCCCEEE-EEEEcCCCCCC
Confidence 87632100 011223222 26888877664 577899 99999865443
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=120.43 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=82.5
Q ss_pred ccCCCCCCCCceeEEEE--ecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 636 TLECEPSGVPQLTDPVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~--~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+.+++|+ +|.++++.. .+.++|.|+|++| ...+|.|++|+|+|+..+...+... ....+.++|.+|+|++.|.
T Consensus 3 s~~~~P~-~P~~l~~~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~ 77 (108)
T 2dm4_A 3 SGSSGPD-APRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEYSRSGSKMWASQ--RAASNFTEIKNLLVNTLYT 77 (108)
T ss_dssp CCCCCTT-SCEEEEEECCTTCSSCEEEEEECC--SCCSSCEEEEEEEEEETTCSCCEEE--EESSSEEEECSCCSSCEEE
T ss_pred CCCCCCc-CCcCeEEEEeccCCCEEEEEEcCC--CCCCCcEEEEEEEEEECCCCCeEEe--cCCccEEEeCCCCCCCEEE
Confidence 3456776 889998876 5788999999999 6889999999999998654333333 3356799999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|+|.+|.|++|+++.++|....
T Consensus 78 ~~V~A~n~~G~g~~S~~~~~~T~~~~ 103 (108)
T 2dm4_A 78 VRVAAVTSRGIGNWSDSKSITTIKGS 103 (108)
T ss_dssp EEEEEEESSCEEEECCCEEEECCSCS
T ss_pred EEEEEECCCceeCCCCCEEEECCCCC
Confidence 99999999999999999999986544
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=118.64 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=81.7
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a 80 (977)
..+|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+......++....++ .|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 3 MGPPRFIQVPENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp CEEEECCCCCCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCeEEeCCCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 457889999999999999999999999 7899999999999999966555566666565 7999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcC
Q psy574 81 KNVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~ 99 (977)
.|..|. .+..+.|.|..+
T Consensus 82 ~n~~g~-~~~~~~l~V~~~ 99 (100)
T 2kdg_A 82 KNRAGE-ATFTVQLDVLAK 99 (100)
T ss_dssp EETTEE-EEEEEEEEEECC
T ss_pred EcCCCe-EEEEEEEEEEec
Confidence 999987 456778888754
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=120.56 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=83.7
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|..|+ +.+...+.++|.|+|++| ...+|.|.+|.|+|+..+...+....+....++++|.+|+|++.|.|
T Consensus 2 ~T~~~~P~~p~--~~v~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 77 (107)
T 2dn7_A 2 SSGSSGPGRPT--MMISTTAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIF 77 (107)
T ss_dssp TTCCCCCCCCE--EEEEECSTTEEEEEEECC--SSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEE
T ss_pred CCCCCCCCCCc--EeEEecCCCEEEEEECCC--CCCCCceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEE
Confidence 57888998554 666667889999999998 67889999999999986655555567778889999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+|.+|.|++|. ..+.|....
T Consensus 78 ~V~A~n~~G~g~~s~-~~~~T~~~~ 101 (107)
T 2dn7_A 78 RLAAKNRAGLGEEFE-KEIRTPEDL 101 (107)
T ss_dssp EEEEEETTEEEEEEE-EEEECCCCC
T ss_pred EEEEEcCCcccCCee-eEEeCCCCC
Confidence 999999999999998 556665443
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=117.28 Aligned_cols=89 Identities=22% Similarity=0.391 Sum_probs=78.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.+|++...++++|.|+|++| ...||.|.+|+|.|+..+ ........+.++.++++|.+|+|++.|.|+|+|+|.
T Consensus 9 ~~P~~l~v~~~t~~Sv~lsW~~p--~~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~~ 86 (103)
T 3t04_D 9 SVPTKLEVVDATPTSLKISWDAY--YSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDT 86 (103)
T ss_dssp CCCCSCEEEEEETTEEEEECTTT--TTTSCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEESC
T ss_pred CCCceeEEEecCCCEEEEEccCC--CCCCCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeC
Confidence 48899999999999999999999 567899999999999864 334556677888999999999999999999999999
Q ss_pred --CCcCCCCCceEEe
Q psy574 722 --AGTGPYSRPALLS 734 (977)
Q Consensus 722 --~G~g~~S~~~~~~ 734 (977)
+|.|+ |.|+.+.
T Consensus 87 ~~~G~~~-S~p~~~~ 100 (103)
T 3t04_D 87 FFPGYEP-NSPISIN 100 (103)
T ss_dssp CCTTCCC-SCCEEEE
T ss_pred CCCCCCC-CCCEEEe
Confidence 99999 9998764
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-12 Score=143.51 Aligned_cols=179 Identities=11% Similarity=0.033 Sum_probs=120.8
Q ss_pred EEEEeeEeC-CCeEEEEEEecCC-----CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 548 ELTEVKPMT-STSVKLTWEILNT-----DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 548 ~~l~~~~~~-~tsv~lsW~~p~~-----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
.++++.... .+++.|+|+++.. +.+..|+|+|+..+ ...|+..... .. ....++..++.|+|+|+|.|
T Consensus 36 ~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~-~~~w~~~~~~---~~--~~~~~~~l~~~y~~rV~a~~ 109 (380)
T 3lb6_C 36 QDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG-SETWKTIITK---NL--HYKDGFDLNKGIEAXIHTLL 109 (380)
T ss_dssp EEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETT-CSSCEEEEES---SS--EEEEECCTTSCEEEEEEEEC
T ss_pred CceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCC-CCcceEEEec---cE--EEEEeecCCCceEEEEEeec
Confidence 789988776 7999999999932 45789999999987 5678877654 12 23345555999999999996
Q ss_pred c----ceeCCCCCc---eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc---ceEE
Q psy574 622 G----SVDGKPSNL---RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS---ALIN 691 (977)
Q Consensus 622 ~----~g~g~~s~~---~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~---~~~~ 691 (977)
. .|.|.+|.. +...+.++.|+.+|++++....+.+++.++|+++. . .+...+|.|+|+..+.. ....
T Consensus 110 ~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~--~-~~~~~~Y~l~y~~~~~~~~~~C~~ 186 (380)
T 3lb6_C 110 PWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI--G-VLLDTNYNLFYWYEGLDHALQCVD 186 (380)
T ss_dssp CHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC---------CCEEEEEECTTCSSCEECSE
T ss_pred CCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCC--C-CCCCccEEEEEEECCCCccccCCC
Confidence 5 566665543 33445778888899999999999999999999974 2 25678999999875421 1111
Q ss_pred EE-ecCCcCeEEec--CCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 692 MT-VSASTPTLLLT--NLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 692 ~~-~~~~~~~~~l~--~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
.. ..+...++.+. ++.+.+.|.|+|+|.|..|.+.. ..+.|.+.
T Consensus 187 ~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s-~~~~~~~~ 233 (380)
T 3lb6_C 187 YIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRS-SYFTFQLQ 233 (380)
T ss_dssp EEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCC-EEEEECGG
T ss_pred ccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeecc-ccEEEcHH
Confidence 11 22333456665 56888999999999998887653 33455443
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=121.49 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=79.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc-eEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.++++.. ..+++.|+|++| .+.++.|++|.|+|+..+..+ ..+..+..+.+++++.+|.+++.|.|||.|+|.
T Consensus 9 ~pP~~l~v~~-~~~sv~L~W~pP--~~~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~n~ 85 (108)
T 1v5j_A 9 SPPRGLVAVR-TPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAG 85 (108)
T ss_dssp CCCEEEEEEE-CSSSEEEEEECC--SCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEET
T ss_pred CCCcceEEEE-eCCEEEEEECCC--CCCCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEEcC
Confidence 6999999876 567899999999 568899999999999843322 223345678999999999999999999999999
Q ss_pred CCcCCCCCceEEeecCCC
Q psy574 722 AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 722 ~G~g~~S~~~~~~t~~~~ 739 (977)
+|.|.+|+++.+.|....
T Consensus 86 ~G~s~pS~~~~v~T~~~~ 103 (108)
T 1v5j_A 86 SFVSDPSNTANVSTSGLS 103 (108)
T ss_dssp TEEEEECSCCCCCCSSCS
T ss_pred CCCcCCCCCEEEEeCCcc
Confidence 999999999999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 977 | ||||
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-18 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 9e-11 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-10 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 8e-07 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 3e-18 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 1e-13 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 5e-10 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 9e-08 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-17 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 1e-14 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-13 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-08 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 7e-17 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-12 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 3e-12 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 5e-07 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-16 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-11 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-11 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-06 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-16 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 4e-11 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-10 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 7e-06 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-15 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 5e-11 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-06 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 5e-15 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-13 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 5e-12 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-04 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 9e-15 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-11 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-11 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-08 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-14 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-12 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-08 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 1e-05 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-14 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-11 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 8e-11 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 3e-07 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 7e-14 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 4e-06 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 2e-13 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 6e-10 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 3e-08 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 0.004 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 3e-13 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 7e-09 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 3e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 5e-13 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 5e-09 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 8e-07 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 2e-05 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 6e-13 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 2e-05 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 0.001 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 7e-13 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 1e-07 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-12 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 8e-11 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 5e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 3e-05 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 2e-12 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 2e-12 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-10 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 2e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 2e-12 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 3e-10 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 3e-08 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 7e-06 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 3e-12 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 1e-04 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 3e-12 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 2e-04 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 4e-12 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 1e-11 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 5e-11 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 5e-04 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 8e-12 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 9e-08 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 4e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 8e-05 | |
| d1wisa1 | 111 | b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) | 1e-11 | |
| d1wisa1 | 111 | b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) | 3e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 1e-11 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-11 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-09 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-06 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-11 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-11 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 9e-08 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-04 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 1e-11 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 7e-05 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 7e-04 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 4e-11 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 9e-10 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 4e-09 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 6e-11 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 8e-11 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-05 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 7e-11 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 4e-09 | |
| d1bpva_ | 104 | b.1.2.1 (A:) Type I titin module {Human (Homo sapi | 9e-11 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 1e-10 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 8e-08 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 4e-04 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 7e-09 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-08 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 2e-10 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 3e-06 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 0.001 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 3e-10 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 4e-08 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 6e-08 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 5e-07 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 3e-10 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 3e-08 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 0.001 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 7e-10 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 2e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 7e-10 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-09 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 0.001 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 8e-10 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 7e-08 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 8e-10 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 8e-09 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 5e-05 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 6e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 9e-10 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-08 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-09 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-09 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 9e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-04 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 2e-09 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 4e-09 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-07 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-06 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 2e-09 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 6e-07 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 5e-06 | |
| d1iarb2 | 101 | b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch | 2e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-09 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 9e-08 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-06 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 1e-07 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 3e-09 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 1e-08 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 4e-09 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 2e-05 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 6e-09 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 9e-09 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 8e-06 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 7e-09 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 5e-08 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 1e-06 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 4e-04 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 7e-09 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 7e-07 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 7e-09 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 4e-05 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 9e-09 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 0.002 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 1e-08 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 6e-07 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-08 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-07 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-04 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 1e-08 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 2e-05 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 1e-08 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 8e-06 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 2e-08 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 9e-05 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 5e-04 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 3e-08 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 1e-07 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 0.001 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 4e-08 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 7e-07 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 5e-08 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 1e-06 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 6e-08 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 7e-08 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 6e-06 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 2e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 9e-08 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 4e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 3e-04 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 1e-07 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 4e-07 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 0.002 | |
| d1ueya_ | 127 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 1e-07 | |
| d1ueya_ | 127 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 2e-05 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 1e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 4e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-06 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 1e-05 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 1e-07 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 2e-06 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 1e-07 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 4e-05 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 0.001 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 2e-07 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 1e-06 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 2e-07 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 5e-07 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 2e-06 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 2e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 6e-06 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 8e-05 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 2e-07 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 2e-07 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 0.004 | |
| d1f2qa1 | 82 | b.1.1.4 (A:4-85) IgE high affinity receptor alpha | 2e-07 | |
| d1f2qa1 | 82 | b.1.1.4 (A:4-85) IgE high affinity receptor alpha | 0.002 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 3e-07 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 5e-06 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 1e-05 | |
| d1ujta_ | 120 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 3e-07 | |
| d1ujta_ | 120 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 1e-06 | |
| d1qg3a2 | 103 | b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum | 4e-07 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 5e-07 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 3e-05 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 6e-07 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 4e-05 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 6e-07 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 9e-07 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 8e-05 | |
| d1k85a_ | 88 | b.1.2.1 (A:) Fibronectin type III domain from chit | 1e-06 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 1e-06 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 8e-05 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 3e-04 | |
| d2b5ib2 | 104 | b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch | 1e-06 | |
| d1fnla2 | 89 | b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C | 1e-06 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 1e-06 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 3e-05 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 8e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 2e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 3e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 5e-06 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 2e-06 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 8e-04 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 2e-06 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 0.002 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 0.002 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 2e-06 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 0.002 | |
| d1fnha2 | 90 | b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu | 2e-06 | |
| d2b5ic1 | 95 | b.1.2.1 (C:130-224) Cytokine receptor common gamma | 3e-06 | |
| d2cuia1 | 101 | b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) | 3e-06 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 3e-06 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 2e-04 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 0.002 | |
| d1fnha1 | 90 | b.1.2.1 (A:3-92) Fibronectin, different Fn3 module | 3e-06 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 4e-06 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 1e-05 | |
| d1n26a3 | 104 | b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c | 4e-06 | |
| d1n26a3 | 104 | b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c | 1e-05 | |
| d1tena_ | 90 | b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId | 5e-06 | |
| d2cuma1 | 93 | b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) | 5e-06 | |
| d1fyhb1 | 98 | b.1.2.1 (B:12-109) Interferon-gamma receptor alpha | 8e-06 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 8e-06 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 1e-05 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 5e-04 | |
| d2dtge1 | 102 | b.1.2.1 (E:808-909) Insulin receptor {Human (Homo | 8e-06 | |
| d2dtge1 | 102 | b.1.2.1 (E:808-909) Insulin receptor {Human (Homo | 0.004 | |
| d1fnha3 | 89 | b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod | 8e-06 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 9e-06 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 9e-06 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 2e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 5e-05 | |
| d1tdqa3 | 86 | b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic | 9e-06 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 1e-05 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 9e-05 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 0.003 | |
| d2cspa1 | 117 | b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho | 1e-05 | |
| d1wfta_ | 123 | b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus | 1e-05 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 1e-05 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 7e-04 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 1e-05 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 1e-05 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 0.003 | |
| d1cfba1 | 100 | b.1.2.1 (A:610-709) Neuroglian, two amino proximal | 1e-05 | |
| d1cfba1 | 100 | b.1.2.1 (A:610-709) Neuroglian, two amino proximal | 4e-05 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 2e-05 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 4e-05 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 0.002 | |
| d2dtge3 | 125 | b.1.2.1 (E:468-592) Insulin receptor {Human (Homo | 2e-05 | |
| d1bqua2 | 115 | b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki | 3e-05 | |
| d1bqua1 | 95 | b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine- | 3e-05 | |
| d2ibga1 | 95 | b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit | 4e-05 | |
| d2ibga1 | 95 | b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit | 0.001 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 4e-05 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 2e-04 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 0.001 | |
| d2vkwa2 | 93 | b.1.2.1 (A:601-693) Neural cell adhesion molecule | 5e-05 | |
| d2d9qb2 | 105 | b.1.2.1 (B:204-308) Granulocyte colony-stimulating | 5e-05 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 5e-05 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 0.003 | |
| d2fcba1 | 85 | b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3 | 6e-05 | |
| d2fcba1 | 85 | b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3 | 8e-04 | |
| d1uvqa1 | 99 | b.1.1.2 (A:85-183) Class II MHC alpha chain, C-ter | 6e-05 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 6e-05 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 9e-05 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 0.002 | |
| d2cuha1 | 102 | b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) | 8e-05 | |
| d1wfua_ | 120 | b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat | 1e-04 | |
| d1f6fb2 | 103 | b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu | 1e-04 | |
| d1uc6a_ | 109 | b.1.2.1 (A:) Ciliary neurotrophic factor receptor | 2e-04 | |
| d1qr4a1 | 87 | b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) | 2e-04 | |
| d1eaja_ | 124 | b.1.1.1 (A:) Coxsackie virus and adenovirus recept | 2e-04 | |
| d1eaja_ | 124 | b.1.1.1 (A:) Coxsackie virus and adenovirus recept | 0.003 | |
| d1wj3a_ | 117 | b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s | 3e-04 | |
| d2gysa4 | 100 | b.1.2.1 (A:317-416) Common beta-chain in the GM-CS | 3e-04 | |
| d2haza1 | 101 | b.1.2.1 (A:489-589) Neural cell adhesion molecule | 3e-04 | |
| d1ogae2 | 127 | b.1.1.2 (E:119-245) T-cell antigen receptor {Human | 4e-04 | |
| d2nxyb2 | 84 | b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H | 8e-04 | |
| d2nxyb2 | 84 | b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H | 0.003 | |
| d2fnba_ | 95 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 0.001 | |
| d1k5nb_ | 100 | b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi | 0.001 | |
| d1kcvh2 | 101 | b.1.1.2 (H:117-217) Immunoglobulin heavy chain gam | 0.001 | |
| d1axib2 | 106 | b.1.2.1 (B:131-236) Growth hormone receptor {Human | 0.001 | |
| d1vcaa2 | 90 | b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 | 0.001 | |
| d1ucta1 | 99 | b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD8 | 0.002 | |
| d1ow0a2 | 108 | b.1.1.2 (A:343-450) Immunoglobulin heavy chain alp | 0.002 | |
| d1neua_ | 119 | b.1.1.1 (A:) Myelin membrane adhesion molecule P0 | 0.002 | |
| d1neua_ | 119 | b.1.1.1 (A:) Myelin membrane adhesion molecule P0 | 0.003 | |
| d1tdqa1 | 93 | b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) | 0.003 | |
| d3d48r2 | 104 | b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom | 0.003 |
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 79.5 bits (195), Expect = 1e-18
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
+P + DT S + + C G V W R G + + L+ S +
Sbjct: 1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKL 60
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ 186
LED+G Y C AEN G + ASA LTVQ
Sbjct: 61 VLEDSGMYQCVAENKHGTVYASAELTVQ 88
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 57.2 bits (137), Expect = 9e-11
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
++ G C G P P + W ++G P+ S+ V G L
Sbjct: 3 DWLDVITDTEADIGSDLRWSC-VASGKPRPAVRWLRDGQPL---ASQNRIEVSGGELRFS 58
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D G YQCV +N GT ++ A L V
Sbjct: 59 KLVLEDSGMYQCVAENKHGTVYAS-AELTV 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 56.8 bits (136), Expect = 1e-10
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQ-WWRGEREVGSGPRVNVTGDGSLVLTDVT 352
P L + + S+ R C G+ W + + + G L + +
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFES 380
EDSG Y CV ++ HG+ SA L ++
Sbjct: 62 LEDSGMYQCVAENKHGTVYASAELTVQA 89
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.0 bits (108), Expect = 8e-07
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + +D ++G D + C G P P+ W+ D
Sbjct: 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL----------RDGQPLASQNRIEVS 51
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
L+ + + + C+ N G+ A A LTV
Sbjct: 52 GGELRFSKLVLEDS-GMYQCVAENKHGTVYASAELTV 87
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 78.8 bits (193), Expect = 3e-18
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMS 146
A + VKPY + D V S F+C V G V W + + + E
Sbjct: 1 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ SL +S+V +D +Y C+A N++G+ + +A L V+
Sbjct: 61 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 65.7 bits (159), Expect = 1e-13
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVT----GD 343
P+ P + + S AR C+V G V W++ + V + G+
Sbjct: 5 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
SL +++V +D +YTC + G A+ +A L E+
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 55.3 bits (132), Expect = 5e-10
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI- 65
F V G A +C G+P+P ++W K+ +P+ ++ + N ++
Sbjct: 10 YFTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 68
Query: 66 -QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ DD +Y C N G T A L V
Sbjct: 69 ISEVCGDDDAKYTCKAVNSLGEATCT-AELLV 99
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 48.7 bits (115), Expect = 9e-08
Identities = 25/105 (23%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
A + P + D+ + G A F C +EG P P W + P +
Sbjct: 1 AEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-----DNPVKESRHF 55
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
Q + +G L I V C VN+ G A L V
Sbjct: 56 QIDYDEEGNCSLTISEVCGDDDAKYT-CKAVNSLGEATCTAELLV 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (186), Expect = 2e-17
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQL 155
P II+ P+D V A + V G +T W + + E + L +
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R E G Y EN +G A LTV P
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (166), Expect = 1e-14
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGTNLAI 65
+ P+ Q+V AG++ L G T W K I ++ +G+ L I
Sbjct: 2 QIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+R+ G Y +V+N G+R++ L V+ KP
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKP 94
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (156), Expect = 3e-13
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLVL 348
P I+ P +Q + L +V G + W + +++ + V L +
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
+E G YT +V++ GS +L +P
Sbjct: 61 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 2e-08
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + + P D ++ G + G+ P + WM + +V+N +
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK--- 57
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
L I + L N GS A+ +LTV P+PP
Sbjct: 58 ---LTILAARQEHCGCYT-LLVENKLGSRQAQVNLTVVDK-PDPP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 74.5 bits (182), Expect = 7e-17
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MSVLPSRSLQ 154
+P I P T V F C V + V W + + + L
Sbjct: 1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 60
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++ V+ +D GEY A+N+ G L V
Sbjct: 61 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.8 bits (149), Expect = 2e-12
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLVL 348
P + P + A C+V V W + +RE+ + +G L +
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
V +D GEYT K+ +G+ L + P
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.4 bits (148), Expect = 3e-12
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAI 65
F V+P V G +A C P + W K+ + R L I
Sbjct: 3 RFIVKPYGTEVGEGQSANFYC-RVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ D G Y KN GT+E L V
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEI-VFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (110), Expect = 5e-07
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 10/106 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P +P + G+ A F C + S PP W + +
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG--- 58
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
L I V N+ G+ L V+ + P
Sbjct: 59 ---LTINRVKGDDK-GEYTVRAKNSYGTKEEIVFLNVT---RHSEP 97
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 73.6 bits (180), Expect = 1e-16
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 100 PYIIRGPKD-TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
P + P+ V + C V G V W + R +V L + V
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-TDSGLVIKGV 61
Query: 159 RLEDAGEYVCEAENAVGKISASATLTV 185
+ D G Y C A N G + V
Sbjct: 62 KNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 59.4 bits (143), Expect = 1e-11
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 7 EFRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
++ +P+ V G + C G P P +VW N P+ V + L I
Sbjct: 4 KYEQKPEKVIVVKQGQDVTIPC-KVTGLPAPNVVWSHNAKPLSGGR----ATVTDSGLVI 58
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + D G Y C N G + +++V
Sbjct: 59 KGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 57.8 bits (139), Expect = 4e-11
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 293 PPVILFGPANQ-TLPLRSEARLRCQVRGEGSVQ-WWRGEREVGSGPRVNVTGDGSLVLTD 350
P P + + + C+V G + W + SG R VT D LV+
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT-DSGLVIKG 60
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLR 377
V D G Y C + HG + ++
Sbjct: 61 VKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 188 APIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
AP ++P + ++ G+D C + G P P+ W + T
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS----------HNAKPLSGGRATV 51
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
L I+ V C N G + V+
Sbjct: 52 TDSG-LVIKGVKNGDKGYYG-CRATNEHGDKYFETLVQVN 89
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 73.4 bits (179), Expect = 2e-16
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS----VLPSRSLQLSD 157
I+ P+ TV F C G+ V TV W R G + + ++S
Sbjct: 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQ 186
V+ D G Y EN+ GK A TLT+Q
Sbjct: 62 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 58.3 bits (140), Expect = 4e-11
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P+S V G++A C G P PT+ W + G + ++ +
Sbjct: 2 ILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60
Query: 68 S-RKTDDGRYQCVVKNVAGTRESTDAVLRV 96
S + +D+G Y VV+N G +E+ L +
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAE-FTLTI 89
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 55.6 bits (133), Expect = 3e-10
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWRGEREVGSGPRVNVTGDGSLVLTD 350
IL P + T+ AR C GE ++ + + ++
Sbjct: 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLR 377
V D G Y+ VV++ G +L
Sbjct: 62 VQASDEGNYSVVVENSEGKQEAEFTLT 88
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 43.3 bits (101), Expect = 7e-06
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252
+P + + G A F C +G P P+ W+ +G +V + + T + ++
Sbjct: 4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 63
Query: 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + + N+ G A +LT+
Sbjct: 64 ASDEGNYS-------VVVENSEGKQEAEFTLTI 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 69.8 bits (170), Expect = 3e-15
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 100 PYII-RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
P I + P DT ++ EC G+ V + W++L + +S L + +V
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS--SEPLLHIQNV 62
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ 186
ED G Y CEAEN G+ + + +
Sbjct: 63 DFEDEGTYECEAENIKGRDTYQGRIIIH 90
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 57.9 bits (139), Expect = 5e-11
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P + PA+ L C G Q + GS ++ + L + +V
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK-WRKLDGSQTSKWLSSEPLLHIQNV 62
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFES 380
ED G Y C ++ G ++ + +
Sbjct: 63 DFEDEGTYECEAENIKGRDTYQGRIIIHA 91
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 50.6 bits (120), Expect = 2e-08
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P G LEC G+P P + W+K + L IQ+
Sbjct: 12 PADTYALTGQMVTLEC-FAFGNPVPQIKWRKLDGSQTSKWLSSEP-----LLHIQNVDFE 65
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRV 96
D+G Y+C +N+ G + +
Sbjct: 66 DEGTYECEAENIKGRDTYQ-GRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 44.0 bits (103), Expect = 3e-06
Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 186 QMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
Q AP I + P+D G+ C G+P P W
Sbjct: 2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------------ 49
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
LL IQNV C N G D + + +
Sbjct: 50 WLSSEPLLHIQNVDFEDE-GTYECEAENIKGRDTYQGRIII 89
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 69.4 bits (169), Expect = 5e-15
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQ 66
+++ + V A +T C P G+P PT+ W KNG E+ V + L ++
Sbjct: 9 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+D G Y CVV+N G+ T L V+
Sbjct: 68 SVVPSDKGNYTCVVENEYGSINHT-YHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 65.6 bits (159), Expect = 1e-13
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPK----DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPS 150
PY K V A++ + F C GG+ + T+ W + G ++
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
SL + V D G Y C EN G I+ + L V
Sbjct: 62 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 61.0 bits (147), Expect = 5e-12
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 300 PANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNV----TGDGSLVLTDVTK 353
+P + + RC G +++W + +E R+ SL++ V
Sbjct: 12 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71
Query: 354 EDSGEYTCVVKSPHGSASWSASLR 377
D G YTCVV++ +GS + + L
Sbjct: 72 SDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 38.6 bits (89), Expect = 3e-04
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 6/94 (6%)
Query: 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
+ + F C G+P P+ W+ N R+ + +
Sbjct: 9 KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVR---NQHWS 63
Query: 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
L +++V + C+ N GS L V
Sbjct: 64 LIMESVVPSDK-GNYTCVVENEYGSINHTYHLDV 96
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 68.7 bits (167), Expect = 9e-15
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSL 153
P I + TV S F V G W + G + L
Sbjct: 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ DV ED+ + +A N G+ S+ A L VQ
Sbjct: 64 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 96
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + +SQ V G A G P+P W KNG I+ + + +
Sbjct: 6 KIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 64
Query: 67 --DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D D N+AG S A L V K
Sbjct: 65 IRDVTGEDSASIMVKAINIAGETSSH-AFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-11
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGS----L 346
P I +QT+ S+A R +V G+ +W++ ++ R+ L
Sbjct: 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V+ DVT EDS + G S A L ++
Sbjct: 64 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 49.1 bits (116), Expect = 6e-08
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + ER + G DA F + G P P W N I DR+ E
Sbjct: 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWY--KNGVKIERSDRIYWYWPEDNVC 61
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287
+ I++V+ + I+ +N AG + A L V
Sbjct: 62 ELV---IRDVTGEDSASIM-VKAINIAGETSSHAFLLVQA 97
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.6 bits (164), Expect = 2e-14
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C PT++WK G + + R ++ L I+
Sbjct: 4 FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+KTD+G Y+C + +A E ++V+V
Sbjct: 63 IKKTDEGTYRCEGRILARG-EINFKDIQVIV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.1 bits (147), Expect = 4e-12
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQL 155
K P V C V T+ WK G + R VL + LQ+
Sbjct: 1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTV 185
++ D G Y CE + V
Sbjct: 61 RGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.5 bits (117), Expect = 4e-08
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQWWR----GEREVGSGPRVNVTGDGSLVLT 349
+ P Q +A + C V + + R V + L +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ K D G Y C + ++
Sbjct: 62 GIKKTDEGTYRCEGRILARGEINFKDIQ 89
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ + P+ + G DAV +C + S PP+ W +G D +
Sbjct: 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG-------RDVILKKDVRFIVLS 54
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
N L+I+ + +T C G A ++ + V
Sbjct: 55 NNYLQIRGIKKT-DEGTYRCEGRILARGEINFKDIQVI 91
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 67.3 bits (163), Expect = 4e-14
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 99 KPYIIRG-PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-------------- 143
+P + G P + + + F C V DA + W +
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63
Query: 144 ---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ L + +V EDAGEY C A N++G SA LTV
Sbjct: 64 AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
Query: 293 PPVILFG-PANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGS--------------- 334
P++ G PAN + + + C+V + +QW + + GS
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63
Query: 335 -GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
G L + +VT ED+GEYTC+ + G + SA L
Sbjct: 64 AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 57.7 bits (138), Expect = 8e-11
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--------------NSKRLRL 57
P + G C +P + W K+ +
Sbjct: 12 PANASTVVGGDVEFVC-KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTD 70
Query: 58 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ L I++ D G Y C+ N G + A L VL
Sbjct: 71 KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS-AWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 47.7 bits (112), Expect = 3e-07
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--NRSLIYPGDR-----VDNIQA 242
+ P++ VG D F+C + P W+ N S P +
Sbjct: 7 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGV 66
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
T + +L I+NV+ A CL N+ G A LTV
Sbjct: 67 NTTDKEIEVLYIRNVTFEDA-GEYTCLAGNSIGISFHSAWLTV 108
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.1 bits (160), Expect = 7e-14
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P T+ + T TL W ++IG+ + GY VE P+
Sbjct: 2 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE------- 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V TV +L G F V +N G S P+ L + +R
Sbjct: 55 ---PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.1 bits (103), Expect = 4e-06
Identities = 17/91 (18%), Positives = 28/91 (30%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P+ PQ + T+ LKW+PP G+ G+ +
Sbjct: 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+ +L G R + N AG +
Sbjct: 61 FTVKDLPTGARILFRVVGVNIAGRSEPATLL 91
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (157), Expect = 2e-13
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----LPSRSLQLS 156
+ + +DTT + EC V D +K +P + L +
Sbjct: 3 VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQM 187
DA EY SA L+V +
Sbjct: 63 GATKADAAEYSVMTTGGQS----SAKLSVDL 89
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 6e-10
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LA 64
Q + G+ LEC + + W KNG I R R+ L
Sbjct: 3 VTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 60
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
I+ + K D Y + + A L V +K
Sbjct: 61 IEGATKADAAEYSVMTTGGQSS-----AKLSVDLK 90
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVT-----GDGSLVLT 349
+ + T L C+V + +V+W++ E+ GP+ L++
Sbjct: 3 VTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62
Query: 350 DVTKEDSGEYTCVVKSPHGSAS 371
TK D+ EY+ + SA
Sbjct: 63 GATKADAAEYSVMTTGGQSSAK 84
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.004
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
+V ++ D G C + ++ N I PG +
Sbjct: 2 MVTKQLEDTTAYCGERVELECEVSEDDANVKWFK---NGEEIIPGPKSRYRI--RVEGKK 56
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
++L I+ ++ A + S A L+V
Sbjct: 57 HILIIEGATKADA-AEYSVMTTGGQSS----AKLSV 87
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (156), Expect = 3e-13
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-----IVGGGNNSA 688
+ T E P G P + + S+ + WK P NGVIR YQI G +
Sbjct: 1 ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYS 60
Query: 689 LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ M + + L NL +Y V + A NRAGTGP S
Sbjct: 61 IVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 102
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 7e-09
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSR-NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
GPP TL T+ + + W ++ + + GYQ+ G + V
Sbjct: 9 DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS------PGSNGQYSIV 62
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ S + T+ NL Y +V+A N G S
Sbjct: 63 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 101
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV------YIYSRGLDPPASVAMLTVLHAGEASGFLV 604
++P+TS S+++TW+ + GV +++ + G++ + +
Sbjct: 16 TLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 75
Query: 605 TGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
L +++Y + F + G S+ TLE
Sbjct: 76 DNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 63.8 bits (154), Expect = 5e-13
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS----VLPSRSL 153
+KP I+ + + A E G T W S + S+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ D+G Y + +N +G+ A + VQ
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (124), Expect = 5e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTN 62
L+ + + ++ AG T LE G P+PT + T+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+ +++ D G Y+ VKN G E+ V+V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAI---FEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (108), Expect = 8e-07
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P + ++++ G G+P P+ W + + + + P VD + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + + + N G D A + V
Sbjct: 61 FFPSAKRADSGNYK-------LKVKNELGEDEAIFEVIV 92
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 5/92 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGE-----GSVQWWRGEREVGSGPRVNVTGDGSLV 347
P IL + L G G + S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
+ DSG Y VK+ G + +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 6e-13
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
VRTL PS PQ + N+ S+++ W+PP T NG I Y+I + + + T
Sbjct: 4 VRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTET 63
Query: 694 VSASTPT-LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + T L+ L G Y+ +AA GTGP +
Sbjct: 64 LVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW 101
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 9/98 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P +L + + + + W + + Y + S + + T
Sbjct: 12 SAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQ-- 69
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ L G Y F V AL +G +
Sbjct: 70 -------LSQLIEGLDRGTEYNFRVAALTINGTGPATD 100
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.001
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLA 608
++ S S+ + W+ G + AS +G L+ GL
Sbjct: 19 SLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLD 78
Query: 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP--SGVPQL 647
+ Y F + + G ++ + T E + + VP++
Sbjct: 79 RGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEV 119
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.6 bits (154), Expect = 7e-13
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P +PT+ + + + W G + ++VE
Sbjct: 11 PEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYK--------KLKKVGDWILAT 61
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
A + +T L G++Y F VRALN G S PS S V+ G
Sbjct: 62 SAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (115), Expect = 1e-07
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTP 699
P P + TSV + W P G + + + L + S
Sbjct: 10 PPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 69
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738
++ +T L GI Y + A N G S P+ + SG
Sbjct: 70 SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 108
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 62.8 bits (151), Expect = 1e-12
Identities = 20/89 (22%), Positives = 32/89 (35%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ QP + +LEC WKK+G +++ D +L
Sbjct: 5 LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLR 64
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ +D+G YQC + AG S R
Sbjct: 65 PQASDEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 57.4 bits (137), Expect = 8e-11
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG----SAMPEDRMSVLPSRSLQ 154
P + P + ++ V EC + G+ + + + + SL
Sbjct: 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ D G Y C AE G S S ++ +
Sbjct: 62 FLRPQASDEGHYQCFAETPAGVAS-SRVISFR 92
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 49.3 bits (116), Expect = 5e-08
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR---VNVTGDGSLV 347
PV+ PA + L C + G +G W+ + + + +GSLV
Sbjct: 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377
D G Y C ++P G A S S R
Sbjct: 62 FLRPQASDEGHYQCFAETPAGVASSRVISFR 92
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P+++++P+++ V C IEG+ + + +S + + E +
Sbjct: 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-- 59
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
L + C AG +R
Sbjct: 60 ----LVFLRPQASDE-GHYQCFAETPAGVASSRV 88
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.2 bits (150), Expect = 2e-12
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 98 VKPYIIRGPK--DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS------VLP 149
V P + + T + + C G T+ W + G + +
Sbjct: 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61
Query: 150 SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S L + +V D EYVC AEN G+ AS L V
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.2 bits (150), Expect = 2e-12
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID---FENSKRLRLVDGTNL 63
+ R + G + L C G PEPT+ W K+G PI+ ++ K + D + L
Sbjct: 7 QARQSIVNATANLGQSVTLVC-DADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSEL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
I++ K D+ Y C+ +N AG ++++ L+V K
Sbjct: 66 TIRNVDKNDEAEYVCIAENKAGEQDAS-IHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.0 bits (134), Expect = 3e-10
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 9/96 (9%)
Query: 291 NPPPVILFGPA--NQTLPLRSEARLRCQVRGEGSVQ-------WWRGEREVGSGPRVNVT 341
N PP + + N T L L C G E +
Sbjct: 1 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
L + +V K D EY C+ ++ G S L+
Sbjct: 61 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
R+ + +G+ +C +G P P+ W +G D +I ++ +S+
Sbjct: 7 QARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE-- 64
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
L I+NV + + C+ N AG A L V
Sbjct: 65 --LTIRNVDKNDEAEYV-CIAENKAGEQDASIHLKV 97
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (150), Expect = 2e-12
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPED------------ 143
+ P+D V+ I F V G ++L V W +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 144 -RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
R S + L ++D + G Y CE ++ LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 3e-10
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGE-----GSVQWWRGERE------------VGS 334
P + + P + + + +V G V+W++G+ S
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
R + L +TD +G Y C V + + +L
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 3e-08
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFENSKRLRLVDGT--- 61
F ++P+ V G + G P + W K + + +
Sbjct: 7 FVMRPQDGEVTVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65
Query: 62 -------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I D++ G Y+C V S L V
Sbjct: 66 ASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN-FNLTV 106
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 7e-06
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 7/104 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ RP D + VG F + G+ PP W L + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 245 ---TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + L I + C D + +LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFT-GGYRCEVSTKDKFDCSNFNLTV 106
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 61.6 bits (148), Expect = 3e-12
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSL-LGYQVEMYSRPLPSSSPSGDTATATWVRV 458
PPT P + + + L W G + Q M + + + +
Sbjct: 2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ S +VT+L TY F + A+ S+ + S S + L+
Sbjct: 62 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPP--VGTHNGVIRTYQIIVGGGNN---------SAL 689
P P +T L+ SV+L+W P Y+++ N
Sbjct: 2 PPTPPNVTR---LSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 58
Query: 690 INMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + T +T+L Y + A S
Sbjct: 59 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 3e-12
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
+ S PGPP+KP + + T N +TL+W + + +
Sbjct: 11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFS-----------QSVS 59
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+W VA +V + + TV L Y F+VRA+N GLS PSP+SD +
Sbjct: 60 NSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR 108
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P PQ+TD + SV L W+P + + II + + TV+ T
Sbjct: 18 PPSKPQVTD---VTKNSVTLSWQPGT---PGTLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 701 L--LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L Y + A N G S + T P
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 61.1 bits (147), Expect = 4e-12
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 8 FRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F QP G + L C R +P T WK NG + R RLV G +
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 95
+ D G YQCV N GT S +A LR
Sbjct: 66 SNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 59.5 bits (143), Expect = 1e-11
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 293 PPVILFGPANQTLPLRSE---ARLRCQVRGEGSVQWWR----GEREVGSGPRVNVTGDGS 345
PV PA+ P S L C+ R + E ++G R +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLRF 378
++ V +D+G Y CV + G+ S ASLRF
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 58.0 bits (139), Expect = 5e-11
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 99 KPYIIRGPKDTTV---SASSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPSRS 152
P P T SA + C + T WK G+ + P+ R ++
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKI-SASATL 183
+ + V+ +DAG Y C A NA G + S A+L
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASL 95
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 188 APIVRERPSDLRLEVG---RDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
P+ E+P+ G C +PP + W + G + P R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSR-------Y 56
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASL 283
+L+ V A C+ NA G+ ++R ASL
Sbjct: 57 RLVAGDLVISNPVKAKDA-GSYQCVATNARGTVVSREASL 95
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (146), Expect = 8e-12
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
TLTV PI+ G C I +PPP L ++
Sbjct: 1 TLTVNGPPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59
Query: 242 AEITSDG-MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
T +G ++ L I N+ R I C N+ GSD L G + + P
Sbjct: 60 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 9e-08
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 13/109 (11%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-----------MPE 142
L V P II + +C + +
Sbjct: 2 LTVNG-PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60
Query: 143 DRMSVLPSRSLQLSDVRLE-DAGEYVCEAENAVGKISASATLTVQMAPI 190
+L +S++ Y C A N+ G + L Q + +
Sbjct: 61 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----- 62
++Q G+ ++C P + W + ++ S R + +
Sbjct: 9 IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 68
Query: 63 --LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
L I + R Y C N G+ +R+ + + GP
Sbjct: 69 STLTISNIVRADFQTIYNCTAWNSFGSDTEI---IRLKEQGSEMSGP 112
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 8e-05
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 19/116 (16%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC------------QVRGEGSVQWWRGE 329
+LTV N PP+I Q + +++C E ++
Sbjct: 1 TLTV-----NGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 54
Query: 330 REVGSGPRVNVTGDGSLVLTDVTKE-DSGEYTCVVKSPHGSASWSASLRFESPTNP 384
R +L ++++ + Y C + GS + L+ +
Sbjct: 55 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P PGPPT + N +TL + + + +
Sbjct: 7 PPELPGPPTNLGISNIGPRSVTLQFRPGYDGKT------SISRWLVEAQVGVVGEGEEWL 60
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+++ + + V +L Y+F +R +N G S PS S +I
Sbjct: 61 LIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 107
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695
+ E G P + SV L+++P G + + VG +
Sbjct: 5 GVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 64
Query: 696 ASTP----TLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S ++ + +L+ YS + N GT P S+P
Sbjct: 65 LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 103
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.6 bits (143), Expect = 1e-11
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160
+ + +V + + F C+ T+ W RL + R + + L + +V+
Sbjct: 5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA-MDFNGILTIRNVQP 63
Query: 161 EDAGEYVCEAENAVGKISASATLTVQ 186
DAG YVC N +ATL VQ
Sbjct: 64 SDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.2 bits (142), Expect = 2e-11
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ +SQ V G C P TLVW + + + L I++
Sbjct: 5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNGILTIRN 60
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ +D G Y C N+ + T A L V
Sbjct: 61 VQPSDAGTYVCTGSNMFAMDQGT-ATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.7 bits (125), Expect = 3e-09
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVR-GEGSVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
P V + +Q++ ++ C + + G P + +G L + +
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 60
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFE 379
V D+G Y C + +A+L +
Sbjct: 61 VQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ E + G D F+C + P T + + D
Sbjct: 3 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------DF 52
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+L I+NV + +C G N D A+L V
Sbjct: 53 NGILTIRNVQP-SDAGTYVCTGSNMFAMDQGTATLHV 88
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 1e-11
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM------SVLPSRSLQLSDVR 159
P TVS + CSV G + W + G+ + L L V
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62
Query: 160 LEDAGEYVCEAENAVGK-ISASATLTVQ 186
DAG Y C+ E+ IS LTV+
Sbjct: 63 RSDAGRYWCQVEDGGETEISQPVWLTVE 90
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 1e-11
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA---IQD 67
P V+ G L C G EP + W K+G + + + + + + ++
Sbjct: 2 APVKLTVSQGQPVKLNC-SVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 60
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
++D GRY C V++ T S L V
Sbjct: 61 VERSDAGRYWCQVEDGGETEISQPVWLTV 89
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 9e-08
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQWWR-------GEREVGSGPRVNVTGDGSLVLTDVT 352
P T+ +L C V G + P G L L V
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62
Query: 353 KEDSGEYTCVVKSPHGSA-SWSASLRFE 379
+ D+G Y C V+ + S L E
Sbjct: 63 RSDAGRYWCQVEDGGETEISQPVWLTVE 90
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 2e-04
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254
P L + G+ C +EG P W+ + + + L +
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWV----KDGAVVQNLDQLYIPVSEQHWIGFLSL 58
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSG 287
++V R+ A C + +++++ LTV G
Sbjct: 59 KSVERSDAGRYW-CQVEDGGETEISQPVWLTVEG 91
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (143), Expect = 1e-11
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P P L L+L WS+ + S + Y +EM + + +
Sbjct: 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEME-----------EETSGYGFK 49
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ TV NL Y F V A NS G S PS
Sbjct: 50 PKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSE 87
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 7e-05
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P LT T + L+W P T + +Y + + +
Sbjct: 3 MPASPVLTK---AGITWLSLQWSKPSG-TPSDEGISYILEMEEETSGYGFKPKYDGEDLA 58
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ NL +Y + A N G S
Sbjct: 59 YTVKNLRRSTKYKFKVIAYNSEGKSNPSEV 88
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 14/88 (15%), Positives = 29/88 (32%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ T + L W + + Y ++ S + GE + V L
Sbjct: 8 VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRS 67
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
++Y+F ++ + PS + T
Sbjct: 68 TKYKFKVIAYNSEGKSNPSEVVEFTTCP 95
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 4e-11
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--------IDFENSKRLRLV 58
G+ A+L C G P W K+G F NS +
Sbjct: 4 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 63
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93
L +D G Y C +N GT +++AV
Sbjct: 64 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 9e-10
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-----------RM 145
V P ++ + + V CS G W + G MP + +
Sbjct: 1 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ L + D GEY CEA N G S + ++
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 4e-09
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVT-------- 341
PP + + + A L C + W++ + + P+
Sbjct: 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61
Query: 342 --GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
G LV ++ D+GEY+C ++ +G+ S ++R E
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 3/100 (3%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P +G AV C +GSPP W +G P + +
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62
Query: 248 GMN-LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
L +S + C N G+ + ++ +
Sbjct: 63 PTTGELVFDPLSASDT-GEYSCEARNGYGTPMTSNAVRME 101
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 6e-11
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-------LGSAMPEDRMSVLPSRS 152
P+ +R ++ V+A F+CS G V + S S
Sbjct: 3 PHFLR-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 61
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
+ + DAG+Y C G S A L V+
Sbjct: 62 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 8e-11
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLAI 65
++ ++ V AG A +C G G + K +++ + +
Sbjct: 6 LRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNV 64
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
++ K D G+Y+C+++ G S A L V
Sbjct: 65 VNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 300 PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREV------GSGPRVNVTGDGSLVLTDV 351
N + A +C G + W +V + S + +
Sbjct: 8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 67
Query: 352 TKEDSGEYTCVVKSPHGSA-SWSASL 376
TK D+G+Y C++++ G S A L
Sbjct: 68 TKRDAGKYRCMIRTEGGVGISNYAEL 93
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 7e-11
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
PS V + TSV L W+ P NG+I Y+I + T+ A T
Sbjct: 4 PSQVVVIR-QERAGQTSVSLLWQEPEQP--NGIILEYEIKYYEKDKEMQSYSTLKAVTTR 60
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ L G RY + A AG G +S+
Sbjct: 61 ATVSGLKPGTRYVFQVRARTSAGCGRFSQA 90
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 4e-09
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P ++L W Q +L Y+++ Y +
Sbjct: 4 PSQVVVIRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKE-----------MQSY 51
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ TV+ L G Y F VRA S G S
Sbjct: 52 STLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQ 89
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 9e-11
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PP KP +N T + +TL W++ G + Y VE P
Sbjct: 3 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGR----------WLKA 52
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR 503
+N+ TV+ LT Y F V A N+ G +S PS SD I R
Sbjct: 53 NFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 1e-10
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F V+PK V L C T+VW + I +
Sbjct: 4 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV--------LNV 55
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ T + C N+ G S A + +
Sbjct: 56 TGVTQSTMFSCEAHNLKGLASSRTATVHL 84
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 8e-08
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
P+ PKD V ++ C G +T+ W R + + L+
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVT 56
Query: 159 RLEDAGEYVCEAENAVGK-ISASATLTVQ 186
+ + + CEA N G S +AT+ +Q
Sbjct: 57 GVTQSTMFSCEAHNLKGLASSRTATVHLQ 85
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK 353
P P + +P + +L C+ G R ++ VL
Sbjct: 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR---GTTKIGGPAPSPSVLNVTGV 58
Query: 354 EDSGEYTCVVKSPHGSA-SWSASLR 377
S ++C + G A S +A++
Sbjct: 59 TQSTMFSCEAHNLKGLASSRTATVH 83
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.9 bits (136), Expect = 2e-10
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA--- 64
V G+ A+L C G P W K+G + ++K+ R ++
Sbjct: 5 KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 64
Query: 65 ------IQDSRKTDDGRYQCVVKNVAGTRESTDAV 93
D G Y C +N GT ++A
Sbjct: 65 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 99
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 13/102 (12%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSR----- 151
V P ++V+ + V CS G W + G +M +
Sbjct: 1 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 152 -------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L V D+GEY C+A+N G S +
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.4 bits (119), Expect = 3e-08
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVT-------- 341
PP ++ + + A L C W++ + +
Sbjct: 2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61
Query: 342 ---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
G L+ VT DSGEY C ++ +G+A S + +
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 56.4 bits (135), Expect = 2e-10
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAV---LTVHWKRLGSAMPEDRMSVLPSRSL 153
L++ + + V FE + V + + L ++ + + L
Sbjct: 1 LIE--VEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + +L GE +A NA ++A L V+
Sbjct: 59 ILHNCQLGMTGEVSFQAANA----KSAANLKVK 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 44.4 bits (104), Expect = 3e-06
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAI 65
E V G+TA E P+ WK G P+ + + L +
Sbjct: 3 EVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILIL 60
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + G N A L+V
Sbjct: 61 HNCQLGMTGEVSFQAANAKSA-----ANLKV 86
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV----NVTGDGSLVLTDVTKED 355
+ + A ++ W+ + + + L+L +
Sbjct: 8 LYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGM 67
Query: 356 SGEYTCVVKSPHGSAS 371
+GE + + +A+
Sbjct: 68 TGEVSFQAANAKSAAN 83
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 3e-10
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 103 IRGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPE-------------DRMS 146
I P+ TV I F V + +L T+ W + +R S
Sbjct: 4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 63
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ + +Q+ + AG Y CE S S L V +
Sbjct: 64 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 4e-08
Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 13/105 (12%)
Query: 8 FRVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVW--------KKNGHPIDFENSKRL 55
F +P+ V G+ P K H E +R
Sbjct: 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62
Query: 56 RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
V + I ++ G Y+C V + L V
Sbjct: 63 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 106
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 6e-08
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 21/112 (18%)
Query: 296 ILF--GPANQTLPLRSEARLRCQV-----------------RGEGSVQWWRGEREVGSGP 336
ILF P T+ + + +V + + + + + +
Sbjct: 1 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 60
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP--TNPNI 386
R + + + +G Y C V S S L T PNI
Sbjct: 61 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 5e-07
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 7/109 (6%)
Query: 193 ERPSDLRLEVGRDAVFLCGIEGSPPPST------FWMLEGNRSLIYPGDRVDNIQAEITS 246
E+P ++VG D F+ ++ S ++ +
Sbjct: 5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSR 64
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
++I A C D L V P +
Sbjct: 65 VYTFEMQIIKAKDNFA-GNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA 688
S+ + + E P P ++N+T + W P P+ + G ++ Y+I +S+
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 689 LINM--------TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
N T S +L L Y++++ N G GP S + + G
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 741 P 741
P
Sbjct: 122 P 122
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 3e-08
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 2/98 (2%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P + + + W L Y + SS + +
Sbjct: 15 MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + L YT VR +N G SP
Sbjct: 75 FQGSKTH--GMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.001
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV---------YIYSRGLDPPASVAMLTVLHAGEASG 601
V + ST ++ W+ + I G S + + G +
Sbjct: 22 RVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTH 81
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
++ GL +S Y + G +G S R T E
Sbjct: 82 GMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (132), Expect = 7e-10
Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 10/102 (9%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P P + + L W L Y V
Sbjct: 7 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKE----------GIAR 56
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V ++ +T+ NL Y F V A N HG S
Sbjct: 57 ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 98
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 2e-07
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 622 GSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV 681
G + P ++ A + + L W+ P H +
Sbjct: 8 GPLPSAPRDVVASLV-----------------STRFIKLTWRTPASDPHGDNLTYSVFYT 50
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
G + T + + NL Y + A N+ G+G S P L + + PE
Sbjct: 51 KEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAP--LRVETQPE 107
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 7e-10
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 12 PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPID--------FENSKRLRLVDGT 61
P S ++ C P G P P+L W NG ++ F V
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
L + ++G Y + N G ++ + + P+
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNPFEF 104
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 2e-09
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 119 FECSVGGDAVLTVHWKRLGSAMPEDRM-----------SVLPSRSLQLSDVRLEDAGEYV 167
SV G ++ W GS + E + L+L+ + G Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 168 CEAENAVGKISASATLTVQMAP 189
A N G+ SAS P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 2e-07
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 300 PANQTLPLRSEARLRC---QVRG--EGSVQWWRGEREVGSGPRV----------NVTGDG 344
PA+ L E C V G S++W + + G
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
L L T ++G YT + +P G AS S F P F PE
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN--P---FEFNPE 107
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.001
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 195 PSDLRLEVGRDAVFLC---GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
P+ ++L + C ++G P PS W+ G+ + ++ +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 252 -LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
L++ + L N G A P
Sbjct: 64 CLRLNQPTHVNN-GNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 8e-10
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S P P P + N+T N LTL W + S + + +E +
Sbjct: 7 LSCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWD-----------EGKGN 54
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+T L+ + F + A N +G S S
Sbjct: 55 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 98
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 7e-08
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 634 VRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN 691
TL CEP P++ + S+ L+WK P I+ + + G +
Sbjct: 4 FTTLSCEPDIPNPPRIAN---RTKNSLTLQWKAPSDN--GSKIQNFVLEWDEGKGNGEFC 58
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738
S +T LS + L+A N GT +S L TSG
Sbjct: 59 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY-TSG 104
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 54.5 bits (130), Expect = 8e-10
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG---HPIDFENSKRLRLVDGTNLAIQDS 68
K AGD ++ C +P + KNG + + R G L + +
Sbjct: 10 SKDMMAKAGDVTMIYC-MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 68
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
D+G Y C V N G + L V+
Sbjct: 69 LPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 51.8 bits (123), Expect = 8e-09
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP------SRSLQLSDVR 159
KD A + + C G + + ++ + G + + + + L
Sbjct: 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 69
Query: 160 LEDAGEYVCEAENAVGKI-SASATLTV 185
ED G Y CE +N VGK S LTV
Sbjct: 70 PEDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 8/94 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT-----GDG 344
PV + + + C G +++ ++V P +T
Sbjct: 2 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377
L+ ED G YTC V + G S L
Sbjct: 62 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 95
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 40.7 bits (94), Expect = 6e-05
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P+ + D+ + G + C +P + ++ ++
Sbjct: 4 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF----KNGKDVNGNPEDRITRHNRTS 59
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTV 285
L + + C N G LTV
Sbjct: 60 GKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 9e-10
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDGSL 346
P + P P+ + LRCQV G + +V RGE+E+ P V + +
Sbjct: 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT 62
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ +++C + +P
Sbjct: 63 TVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAP 97
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 2e-08
Identities = 10/91 (10%), Positives = 19/91 (20%), Gaps = 1/91 (1%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
E + P G L C G P L + + + +
Sbjct: 5 ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTV 64
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
R ++ C + +
Sbjct: 65 LVRRDHHGAQFSCRTELDLRPQGLE-LFENT 94
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-07
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 4/100 (4%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAMPEDRMSVLPSRS- 152
+ P + + C V G A LTV R + + P+
Sbjct: 2 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+ R ++ C E + ++
Sbjct: 62 TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQ 101
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 1e-09
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 33/115 (28%)
Query: 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------------ 151
R P V A + + + + GD TV W++ + + P
Sbjct: 14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73
Query: 152 ---------------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ ED G Y +N VG+ + T+ V
Sbjct: 74 DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 4e-09
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------------------- 48
P + V AG+ L+ P G P PT++W+K +
Sbjct: 16 PDTIVVVAGNKLRLDV-PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 74
Query: 49 ----FENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
E R+R+ D + ++ + K D+G Y VKN G + ++V+
Sbjct: 75 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN-LTVKVI 129
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 9e-08
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 274 AGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVG 333
AG+ R + +SG DP P + A + G+ + +
Sbjct: 23 AGNK-LRLDVPISG-DPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE 80
Query: 334 SGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ RV V + KED G YT VK+P G + +++
Sbjct: 81 TEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 13/120 (10%), Positives = 28/120 (23%), Gaps = 24/120 (20%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE----- 243
P + + G I G P P+ W + P + +
Sbjct: 10 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 69
Query: 244 ------------------ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
T+ ++ ++ + + N G D ++ V
Sbjct: 70 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDE-GVYTVTVKNPVGEDQVNLTVKV 128
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 2e-09
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQD 67
R + +A + + C + T+ W K+ + R+ L
Sbjct: 6 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVP 65
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
++ D G Y CVV+N + + +
Sbjct: 66 AKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENE 97
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 4e-09
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 106 PKDTTVSASSIIVFECSV-GGDAVLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVRL 160
SA+ I V C + + T+ W + + + L ++
Sbjct: 9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68
Query: 161 EDAGEYVCEAENAVGKISASATLTVQ 186
ED+G Y C N+ + +
Sbjct: 69 EDSGHYYCVVRNSSYCLRIKISAKFV 94
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 3e-07
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVT---GDGS 345
+IL AN+ C + +G++ W++ + +
Sbjct: 7 EEKIILVSSANEI------DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 60
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
L EDSG Y CVV++ S +
Sbjct: 61 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 92
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-06
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 6/102 (5%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
RE L V C + + T + + ++ I
Sbjct: 5 EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK---- 60
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
L + C+ N++ + S +PN
Sbjct: 61 -LWFVPAKVEDSG-HYYCVVRNSSYCLRIKISAKFVENEPNL 100
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 99 KPYIIRG--PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156
P + P + T +S C G+ + + + G+
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE---------SV 52
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
V + G Y+C A + G+++ T+ V
Sbjct: 53 TVTRDLEGTYLCRARSTQGEVTREVTVNVL 82
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 6e-07
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 292 PPPVILFG-PANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P + P N T P S+ CQ G ++ +
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK----------DGTFPLPIGES 51
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
VT++ G Y C +S G + ++ SP
Sbjct: 52 VTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 84
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 5e-06
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 14/87 (16%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P + C G+P P L K+G +
Sbjct: 11 PGNWTWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPIGE------------SVTVTRD 57
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLV 98
+G Y C ++ G + + + VL
Sbjct: 58 LEGTYLCRARSTQGE-VTREVTVNVLS 83
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P T+ ++ L L WS + + D A
Sbjct: 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSEN------DPADFRIYN 55
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
V PS + + L G++Y VRA + S S
Sbjct: 56 VTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 98
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------- 151
P + ++ + C +T + + +
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 152 ---SLQLSDVRLED-AGEYVCEAENAVGKISASATLTV 185
L + ++ +E G+Y C ++ G A TL V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 9e-08
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG---------EGSVQWWRGEREVGSGPRVNVTGD 343
PP + +++ + A L C+ GS R V+
Sbjct: 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61
Query: 344 G---SLVLTDVTKED-SGEYTCVVKSPHGSASWSASLR 377
L + ++ E G+Y C S GS +LR
Sbjct: 62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 3e-07
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P V+ S + G A+ +C E PP + + + S + ++S
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 249 -MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ L I+N++ A P C G ++ GSD A +L V
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 2e-06
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---D 59
+ S+ + G+TA+L C PP + + + R +
Sbjct: 4 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 63
Query: 60 GTNLAIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRV 96
+ L I++ D G+Y+C + G+ ++ LRV
Sbjct: 64 RSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 100
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-09
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 11/94 (11%)
Query: 99 KPYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRS 152
+ + VS I + V W + G + + R+
Sbjct: 5 STAFQKKLEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRT 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L +S L D Y C S L V+
Sbjct: 64 LTISQCSLADDAAYQCVVGGE----KCSTELFVK 93
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 1e-07
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 69
+ +V+ G L + + W KNG I SK + G L I
Sbjct: 13 EPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCS 70
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
DD YQCVV E L V
Sbjct: 71 LADDAAYQCVVGG-----EKCSTELFV 92
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 3e-04
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGE-GSVQW-WRGEREVGSGPRVNVTGDG---SL 346
+ + RL ++ V+W G+ SG + G +L
Sbjct: 5 STAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSAS 371
++ + D Y CVV S
Sbjct: 65 TISQCSLADDAAYQCVVGGEKCSTE 89
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 3e-09
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 303 QTLPLRSEARLRCQV----RGEGS----VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKE 354
Q LP+ + L C + E + +QW++ + + L++ +V ++
Sbjct: 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 68
Query: 355 DSGEYTCVVKSPHGSASWSASLRFE 379
G YTC + + + E
Sbjct: 69 HRGNYTCHASYTYLGKQYPITRVIE 93
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 1e-08
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 1/98 (1%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDV 158
+ + P + + + + W + + + L + +V
Sbjct: 6 IFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV 65
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196
+ G Y C A T ++ + +P+
Sbjct: 66 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-09
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 398 PGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PG P KP++ + ++ + W G +++ Y VEM
Sbjct: 11 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG-----------NKW 59
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + L G Y V ++ G SA S
Sbjct: 60 EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSE 98
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
T +P + + +++ S + W PP I Y + + G+N M
Sbjct: 3 EFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKD-NGGATINKYVVEMAEGSNGNKWEM 61
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S +T L L+ G Y + + + G S
Sbjct: 62 IYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES 99
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 6e-09
Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
V T P + TS+LL W PP T Y+
Sbjct: 4 VITQTGVPGQPLNFK-AEPESETSILLSWTPPRSDTIANYELVYK-----DGEHGEEQRI 57
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ L L Y LAA + G G +
Sbjct: 58 TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE 94
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 9e-09
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PG P ++ + L+W+ S ++ Y++ +
Sbjct: 11 PGQPLNFKAEPESETSILLSWTPPR---SDTIANYELVYK------------DGEHGEEQ 55
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
T P + L Y F + A + GL A +
Sbjct: 56 RITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 93
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 8e-06
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ +P + TS+ L+W +D I + + + + + + GL
Sbjct: 18 KAEPESETSILLSWTPPRSDTIANYELVYK----DGEHGEEQRITIEPGTSYRLQGLKPN 73
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
S Y F L G + + RT++
Sbjct: 74 SLYYFRLAARSPQGLGASTAEISARTMQ 101
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENS------KRLRLVDG 60
+ + + AGD LEC P + P + W K + K + +
Sbjct: 6 YIKRQSEHSILAGDPFELEC-PVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISF 64
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL-VK 99
L + D+G Y+C + ES L V VK
Sbjct: 65 FILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 5e-08
Identities = 22/98 (22%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS------ 152
I+ + ++ A EC V V W +L S
Sbjct: 4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63
Query: 153 ---LQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
L V D G Y C A I S S TL V
Sbjct: 64 FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ +R S+ + G C ++ + N + + E +
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVS 286
+L + V C + + +L V+
Sbjct: 63 SFFILHFEPVLPNDNG-SYRCSANFQSNLIESHSTTLYVT 101
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREV--------GSGPRVNVT 341
+ + + ++ L C V+ V W + S
Sbjct: 3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI 62
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASL 376
L V D+G Y C S S +L
Sbjct: 63 SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 98
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 7e-09
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 625 DGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG 683
DG PS+ RTL+ P + + TSV L W+PP + +
Sbjct: 4 DGSPSHPPILERTLDDVPGPPMGIL-FPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNT 62
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ ++ S T L Y + A R G G +
Sbjct: 63 TTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 109
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 7e-07
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
SP++P I R + PGPP + L W ++ R
Sbjct: 6 SPSHPPI-LERTLDDV--PGPPMGILFPEVRTTSVRLIWQPPAAPNGII---LAYQITHR 59
Query: 440 PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+++ T + T T L Y F + A G +
Sbjct: 60 LNTTTAN-------TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAE 108
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 52.3 bits (124), Expect = 7e-09
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNL 63
+EF + + ++ G + C PP +P + W N P R + NL
Sbjct: 4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL 63
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTREST 90
I + +D G Y C + +
Sbjct: 64 YIAKTEASDLGNYSCFATSHIDFITKS 90
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR----MSVLPSRS 152
++ + ++ ++F CS L+ W + +
Sbjct: 3 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISAS-----ATLTV 185
L ++ D G Y C A + + I+ S + L++
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 100
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.4 bits (122), Expect = 9e-09
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
G P + + T N T++W+ S + Y T V
Sbjct: 2 GSPKGISFSDITENSATVSWTPPRSRVDSYRVSYVPITGG---------------TPNVV 46
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
+ + L G+ Y + ++ S P
Sbjct: 47 TVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 81
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 36.0 bits (82), Expect = 0.002
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ S + W P + +Y++ +TV S L L G+ Y
Sbjct: 12 ITENSATVSWTP-----PRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDY 66
Query: 713 SVSLAATNRAGTGP 726
+V++ +
Sbjct: 67 NVNIISVKGFEESE 80
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 1e-08
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-GGGNNSALINM 692
VRT E P V L+ + TS+ + W+ P NG++ Y+I + +
Sbjct: 4 VRTHEDVPGPVGHLS-FSEILDTSLKVSWQEPG--EKNGILTGYRISWEEYNRTNTRVTH 60
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ T +T L+A Y++ +AA G G S +++SG P
Sbjct: 61 YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS---TISSGVPP 106
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 6e-07
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGP + L ++W + L GY++ T T V
Sbjct: 11 PGPVGHLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEY----------NRTNTRVT 59
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ VT LT TYT V A+ S G S
Sbjct: 60 HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA 97
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 1e-08
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 11/102 (10%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--------RMSV 147
V P ++ + I E V G+ T+HW G + E +
Sbjct: 2 VYYPPRVVSLEEPELRLEHCI---EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 58
Query: 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ L + + G Y A+N +G + + P
Sbjct: 59 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 12 PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLA 64
P+ + + L C RG+P PTL W NG P+ + + L
Sbjct: 6 PRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
++G Y + KN GT T L +P+ +
Sbjct: 66 FNKPTHYNNGNYTLIAKNPLGTANQT-INGHFLKEPFPV 103
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 7/110 (6%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
TV P V E+ + + G+PPP+ W+ N + + +
Sbjct: 1 TVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLH--NGQPLRESKIIHVEYYQ 55
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
L + + N G+ + P P
Sbjct: 56 EGEISEGCLLFNKPTHYNN-GNYTLIAKNPLGTANQTINGHFLKE-PFPV 103
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.2 bits (121), Expect = 1e-08
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 62
+ + P ++ G++ C + + W N +R+ +V D +
Sbjct: 2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 61
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I ++ D G Y+CVV GT+ +++
Sbjct: 62 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 106 PKDTTVSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRMSVLP----SRSLQLSD 157
P +S F C V GDA + + + R+SV+ S +L + +
Sbjct: 7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 66
Query: 158 VRLEDAGEYVCEAENAVGKIS-ASATLTV 185
++DAG Y C G S A+ + +
Sbjct: 67 ANIDDAGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 1e-08
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 398 PGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P P P + L W++ G+S L+ Y +EM S + A T
Sbjct: 11 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEM----------SENNAPWTV 59
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502
+ + + + +TV L +Y F + A+N G S ++ + L
Sbjct: 60 LLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 8e-06
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
VR L P V ++ L W P G N + Y + + N + +
Sbjct: 7 VRQLPHAPEHPVATLSTV--ERRAINLTWTKPFDG--NSPLIRYILEMSENNAPWTVLLA 62
Query: 694 VSASTPT-LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T + + L Y L A N G G +S+
Sbjct: 63 SVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 100
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.2 bits (119), Expect = 2e-08
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + ++TA L L W + + Y + +
Sbjct: 3 APKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQY------------HEVLVPK 50
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
P+ T+T+L G Y + A+ + S P+ ++
Sbjct: 51 GIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMN 88
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 9e-05
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
V T+TS+ L W+ + + + L +L G + +T L
Sbjct: 8 RVGSRTATSLDLEWDN-SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPG 66
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAV 634
+ Y + S P+ + A
Sbjct: 67 TEYGVGISAVMNSKQSIPATMNAR 90
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 5e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
ATS+ L+W Y + G ++ T LT+L G Y
Sbjct: 13 TATSLDLEWDNSE-AEAQEYKVVYST-LAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYG 70
Query: 714 VSLAATNRAGTGPYS 728
V ++A + +
Sbjct: 71 VGISAVMNSKQSIPA 85
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 3e-08
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGP + +T+ W G+ + Y++ + T
Sbjct: 11 PGPAPNLRAYAASPTSITVTWETPVS-GNGEIQNYKLYYM-----------EKGTDKEQD 58
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V + S T+ L Y+F V A N HG +P
Sbjct: 59 VDVSSHS--YTINGLKKYTEYSFRVVAYNKHGPGVSTP 94
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 1e-07
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P P L + TS+ + W+ P + NG I+ Y++ V S+ +
Sbjct: 11 PGPAPNLR-AYAASPTSITVTWETPV--SGNGEIQNYKLYYM--EKGTDKEQDVDVSSHS 65
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ L YS + A N+ G G +
Sbjct: 66 YTINGLKKYTEYSFRVVAYNKHGPGVSTPD 95
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.001
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTD--YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
+ TS+ +TWE + I+ +Y + H+ + + GL
Sbjct: 18 RAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS-----YTINGLK 72
Query: 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
Y+ Y F +V + G + AVRTL
Sbjct: 73 KYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 102
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 4e-08
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 634 VRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTY---QIIVGGGNNSA 688
T E P+ P+ V ++++ W+PP NG I Y
Sbjct: 4 GTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPS--EANGKITGYIIYYSTDVNAEIHD 61
Query: 689 LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ V + T + L+ Y + A N G GP S
Sbjct: 62 WVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEA 103
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 398 PGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PP T+V + + W ++ + + GY + + W
Sbjct: 12 TSPPKDVTVVSKEGKPKTIIVNWQPPSE-ANGKITGYIIYYS--------TDVNAEIHDW 62
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V + LT+ Y F ++A NS G+ S
Sbjct: 63 VIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE 102
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 5e-08
Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 398 PGPPTKPTLV-NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PGP P L A + L W G S + Y VEM
Sbjct: 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEM------------SPIEKDEP 49
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
R TV++L G TY+F +RA N G S D G
Sbjct: 50 REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 97
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 1e-06
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P P+L A + L+W PP G + + S
Sbjct: 4 PCLPPRLQGRP--KAKEIQLRWGPP--LVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE 59
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+++L G YS L A N+ G GP+S
Sbjct: 60 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 6e-08
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 98 VKPYIIRGPK-DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155
VKP + P+ V+ + C + D +V W+ S L +
Sbjct: 1 VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG-LDTSLGAVQSDTGRSVLTV 59
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ L AG VC + L V
Sbjct: 60 RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (119), Expect = 7e-08
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
KP + A + L WS + + + V S +G +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD---GKYK 74
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+T+ +L + Y V+A + PS
Sbjct: 75 SVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 6e-06
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 628 PSNLRAVRTLECEPSGV--PQLTDPVLLNATSVLLKWKPPP-------VGTHNGVIRTYQ 678
S + E S + P +D + A +V+L W PP + + Y+
Sbjct: 5 SSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWSPPSSLINGETDESSVPELYGYE 61
Query: 679 IIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++ + L +L + Y + A + G S
Sbjct: 62 VLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 10/110 (9%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV--------YIYSRGLDPPASVAMLTVLHAGEASGF 602
+ + +V LTW ++ Y Y + ++ GE +
Sbjct: 25 VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNI 84
Query: 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS--GVPQLTDP 650
+ L Y + + S+ G PS TL CEP P+++ P
Sbjct: 85 TLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGP 134
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.9 bits (115), Expect = 9e-08
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM------------S 146
K + D V + I C+ G + V WK + +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
S + S V +D GEY C G+ ++ +
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 11/98 (11%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------ENSKRLRLVDG 60
+V ++ L C G P + WK
Sbjct: 6 TAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS 64
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVL 97
+ + + D+G Y C+V G ++ L VL
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQW-------------WRGEREVGSGPRVNV 340
+ ++ +P +L C G S + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ + VT++D+GEYTC+V G S+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.5 bits (115), Expect = 1e-07
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 323 VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
++ R + + +G L + ++T++DSG Y V S +G+ + +L
Sbjct: 39 AEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALD 93
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 4e-07
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 141 PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+L + L++ ++ +D+G Y + G + L ++
Sbjct: 50 KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 95
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 14 SQRV--AAGDTALLEC-GPPRGHPEPTLVWKKNGHPIDFEN--------SKRLRLVDGTN 62
S V A G L + W++ + S ++ +
Sbjct: 2 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 61
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVL 97
L I++ + D G Y V + GTR A+ LR+L
Sbjct: 62 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL 97
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 1e-07
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP L +Q + L+W+ + S + W
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDA----------MHKPGLWHH 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ NL+ + Y+F V A+NS G S PS S++ +
Sbjct: 67 QTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL 110
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 22/99 (22%), Positives = 29/99 (29%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLL 702
P + SV L W P + + T + T T
Sbjct: 18 NPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTA 77
Query: 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
NLS + YS + A N G S + LT EP
Sbjct: 78 QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
P + + + C P +G+P+P L W NG ++ ++ +
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L + + ++G Y + KN G E + P I
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWPGI 102
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 4e-07
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDAGEYV 167
+V G+ + W G+ + E LQL + + G+Y
Sbjct: 19 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78
Query: 168 CEAENAVGKISASATLTVQMAP 189
A+N GK + P
Sbjct: 79 LIAKNEYGKDEKQISAHFMGWP 100
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 3e-06
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 5/104 (4%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
V AP + S ++G+P P+ W L I
Sbjct: 1 VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWF-YNGAILNESKYICTKIHVTN 56
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
++ L++ N + + N G D + S G
Sbjct: 57 HTEYHGCLQLDNPTHMNN-GDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR--------VNVTG 342
P I F + + + V+G + ++QW+ + +
Sbjct: 4 APTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G L L + T ++G+YT + K+ +G S F P I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW--PGI 102
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 1e-07
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
+ LL+W PP G + Y++ + + + +T L G Y
Sbjct: 12 AMNTALLQWHPPK--ELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYI 69
Query: 714 VSLAATNRAGTGPYSRP 730
LAA NRAG G
Sbjct: 70 FRLAAKNRAGLGEEFEK 86
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PG PT + N L W ++ LLGY+++ A
Sbjct: 1 PGRPT-MMISTTAMNTALLQWHPPKELPGE-LLGYRLQYC-----------RADEARPNT 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ TVT L G TY F + A N GL
Sbjct: 48 IDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF 84
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM---TVSAS 697
P P +T +N T+++LKW P +N I + I ++ + V
Sbjct: 1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++L Y + + N G +S
Sbjct: 61 RYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 9/99 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSR-NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P + L W ++ + G+ + + +
Sbjct: 2 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTD--------SDNDSDYK 53
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ ++++L +Y ++ N G S S
Sbjct: 54 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN 92
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 0.001
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDY----IEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+T + T++ L W + I G YIY R D + G+
Sbjct: 6 YITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHS 65
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
++ L + Y+ + F + + SN+ T
Sbjct: 66 ISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P V+ T +TL+W + Q L +
Sbjct: 1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEH------------NEFNS 48
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + L G+ Y VRA G S
Sbjct: 49 SMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSG 86
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-06
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
PS VP + V S+ L W P NG+I Y+I ++ + + T T
Sbjct: 1 PSTVPIMH-QVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEHNEFNSSMARSQTNT 57
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ L G+ Y V + A AG G +S
Sbjct: 58 ARIDGLRPGMVYVVQVRARTVAGYGKFSGK 87
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 2e-07
Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 2/80 (2%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V GD+ L C T+ W G L ++
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP--SRWAGMGRRLLLR 65
Query: 67 DSRKTDDGRYQCVVKNVAGT 86
+ D G Y C
Sbjct: 66 SVQLHDSGNYSCYRAGRPAG 85
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 5e-07
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHW-KRLGSAMPEDRMSVLPSRSLQLS 156
P T + C + TVHW R +A R L L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLR 65
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
V+L D+G Y C + L V
Sbjct: 66 SVQLHDSGNYSCYRAGRPA---GTVHLLVD 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 20/90 (22%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSL 346
P P T L C +V W + GS P L
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L V DSG Y+C G + + L
Sbjct: 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHL 89
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 2e-07
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 99 KPYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------ 151
+P I+ +T V S I C+V G +WK GS + ED +
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60
Query: 152 ----------SLQLSDVRLEDAG-EYVCEAENAVGKISASATLTVQ 186
L +S++ + C A+N G +A L
Sbjct: 61 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 106
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-06
Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 16/102 (15%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-------- 62
++ V G L C G WK NG ID ++
Sbjct: 8 ANETMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRS 66
Query: 63 -----LAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLV 98
L I + + C KN G + L V
Sbjct: 67 TLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY-IQLIYPV 107
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 8e-05
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN------RSLIYPGDRVDNIQA 242
IV + +++G +C + G +W G+ L V+N
Sbjct: 3 VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 62
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ S + +L I + C N G D A L
Sbjct: 63 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGT 61
+ + G L+C P +P+P + WKK D +
Sbjct: 7 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 66
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ +D +Y C KN A E +
Sbjct: 67 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 101
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + + + +AW S + Y + A
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIH--------------ELFPA 49
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + L G YT V AL+ S P
Sbjct: 50 PDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPL 84
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.004
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
++ S+ + W+ P + TY G + T L L G Y
Sbjct: 13 VDVDSIKIAWESPQG-QVSRYRVTYSSPEDGIHELF---PAPDGEEDTAELQGLRPGSEY 68
Query: 713 SVSLAATNRAGTGP 726
+VS+ A +
Sbjct: 69 TVSVVALHDDMESQ 82
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 2e-07
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
KP + P + + C+ ++ +S + SL + +
Sbjct: 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKW-----FHNGSLSEETNSSLNIVNA 55
Query: 159 RLEDAGEYVCEAENAVGKISASATLTV 185
+ ED+GEY C+ + S L V
Sbjct: 56 KFEDSGEYKCQHQQVNE--SEPVYLEV 80
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.002
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK 353
P + P + L C V + ++ + SL + +
Sbjct: 2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN----GSLSEETNSSLNIVNAKF 57
Query: 354 EDSGEYTCVVKSPHGSAS 371
EDSGEY C + + S
Sbjct: 58 EDSGEYKCQHQQVNESEP 75
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 3e-07
Identities = 17/90 (18%), Positives = 24/90 (26%), Gaps = 2/90 (2%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+VQ + V GD LL C G W K L
Sbjct: 4 TLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + C +N G E + + V
Sbjct: 63 VTSDLNRKNVTCWAENDVGRAEVS-VQVNV 91
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 5e-06
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P ++ + + ++VG D + C +EG W+ +
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWI--------LTELEQSATVMKSGGLP 54
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
L + NV+ + C N G + VS
Sbjct: 55 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---AMPEDRMSVLPSRSLQLS 156
P + + +V ++ C V G + W A + +
Sbjct: 3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTV 185
+ C AEN VG+ S + V
Sbjct: 63 VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 3e-07
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPAS 587
G S R+ ++ L G L+ L +T T+V++TW + +I+G + R +
Sbjct: 4 GSSGRQVQKEL---GDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 60
Query: 588 VAMLTVLH--AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP 645
+ L ++ L YE + P+F G S + VRT E SG
Sbjct: 61 TSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTT--EESGPS 118
Query: 646 Q 646
Sbjct: 119 S 119
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 1e-06
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 635 RTLECEPSGVP-QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-----GGGNNSA 688
R ++ E V +L +PV+L T+V + W I+ Y+++ +S
Sbjct: 8 RQVQKELGDVLVRLHNPVVLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSW 64
Query: 689 LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + +L NL G+ Y + + G S + T P
Sbjct: 65 QNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGP 117
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 4e-07
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + ++ L+W+ + Y +
Sbjct: 3 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEIT------AYEVCYGLVNDDNRPIGPMKKV 56
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ N + +L + NL Y + V+A N G
Sbjct: 57 LVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPER 93
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 46.5 bits (109), Expect = 5e-07
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q G+T +L C + P + + +NG F S I +
Sbjct: 5 LQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFS-------IPQAN 57
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ G Y C S + V
Sbjct: 58 HSHSGDYHCTGNIGYTLYSSKPVTITV 84
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161
+++ P +I++ S ++ V + + + + + +
Sbjct: 4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQ----NGKSKKFSRSDPNFSIPQANHS 59
Query: 162 DAGEYVCEAENAVG-KISASATLTVQ 186
+G+Y C S T+TVQ
Sbjct: 60 HSGDYHCTGNIGYTLYSSKPVTITVQ 85
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-07
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q ++ V G L C R +++ K+G + + N++I ++
Sbjct: 5 LQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------NISITNAT 57
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
D G Y C K ES + V+ P
Sbjct: 58 VEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161
+++ + + + + V V + + G A+ + ++ +++ +E
Sbjct: 4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN----HNISITNATVE 59
Query: 162 DAGEYVCEAENAVG-KISASATLTVQMAP 189
D+G Y C + S +TV AP
Sbjct: 60 DSGTYYCTGKVWQLDYESEPLNITVIKAP 88
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 6e-07
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 106 PKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
+ +CS + A + ++ + ++ ++L + ++ D+G
Sbjct: 4 YRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 63
Query: 165 EYVCEAENAVGKISASATLTV 185
Y C +E V + +
Sbjct: 64 VYQCLSEERVKNKTVFQVVAK 84
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 9e-07
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+ + G TA L+C + K + + S + L+ NL I +
Sbjct: 1 KGSYRQHFFKHGGTAELKCSQKSNLARV---FWKFQNGVLKAESPKYGLMGRKNLLIFNL 57
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ D G YQC+ + + V+ V
Sbjct: 58 SEGDSGVYQCLSEERVKNKTVF-QVVAKHV 86
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 8e-05
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 302 NQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNV--TGDGSLVLTDVTKEDSGEY 359
A L+C + + +W+ + V G +L++ ++++ DSG Y
Sbjct: 6 QHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVY 65
Query: 360 TCVVKSPHGSASWSASL 376
C+ + + + +
Sbjct: 66 QCLSEERVKNKTVFQVV 82
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Score = 45.6 bits (107), Expect = 1e-06
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PT QT + +TL+W+ + + GY V
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYN------------------GTA 43
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+AT V T++ L +YTF V+A ++ G S S+ + ++
Sbjct: 44 LATTVTGTTATISGLAADTSYTFTVKAKDAAGN--VSAASNAVSVK 87
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 1e-06
Identities = 10/100 (10%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWRGEREVGSGPRVNVTGDG-- 344
PP ++ + + + C+V + +RG +
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 345 ---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ T ++ ++C+ S + + +P
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAP 100
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 8e-05
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV--WKKNGHPIDFENSKRLRLVDGTN- 62
+ + + VA G + +EC P P +L + + +E +
Sbjct: 3 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRE-------STDAVLRV 96
R+ + C+ +R S +L +
Sbjct: 63 ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEI 105
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 10/101 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGG---DAVLTVHWKRLG------SAMPEDRMSVLPS 150
+I + T V+ EC V LT+ R + +
Sbjct: 3 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 62
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191
+ + R + + C A + + AP +
Sbjct: 63 ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS-APKM 102
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 9/107 (8%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P +V+ + ++W + P
Sbjct: 3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSP--------GHTWEEAPL 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR 503
+ + + LT Y F VR G + SP S + R
Sbjct: 55 LTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 45.3 bits (106), Expect = 1e-06
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q D L C + + + +NG + + I +
Sbjct: 7 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKAT 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D G Y C + S + +
Sbjct: 60 LKDSGSYFCRGLVGSKNVSSETVNITI 86
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 20/191 (10%), Positives = 42/191 (21%), Gaps = 23/191 (12%)
Query: 551 EVKPMTSTSVKLTWE--ILNTDYIEG--VYIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
+S+ + L W+ I V+ + D +
Sbjct: 10 ISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKG----------L 59
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDP------VLLNATSVLL 660
+ + + P Q+ +
Sbjct: 60 KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHN 119
Query: 661 KWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720
P + R+ + GNN + +L+++ L Y + L A N
Sbjct: 120 VVFVP---RPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACN 176
Query: 721 RAGTGPYSRPA 731
+ A
Sbjct: 177 QDTPEERCSVA 187
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 10/129 (7%), Positives = 23/129 (17%), Gaps = 17/129 (13%)
Query: 379 ESPTNPNIGFFRAPEPSTY----PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQV 434
+ + + + + L LG
Sbjct: 78 HNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVG 137
Query: 435 EMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ V L ++ L Y ++A N
Sbjct: 138 NAGNNE-------------EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERC 184
Query: 495 PLSDEIVLR 503
++ + R
Sbjct: 185 SVAAYVSAR 193
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 21/246 (8%), Positives = 50/246 (20%), Gaps = 50/246 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
T P P P V+ +++ + L W + ++ Y V + S
Sbjct: 1 TNPSVPLDPISVSNSSSQIILKWKPPSDPN-GNITHYLVFWERQAEDSELFE-------- 51
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
T++ + +S + +
Sbjct: 52 --------LDYCLKGLKLPSRTWSPPFESEDSQKHNQSEY-----------EDSAGECCS 92
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
E S + + +
Sbjct: 93 CPKTDSQILKELEESS--------------------FRKTFEDYLHNVVFVPRPSRKRRS 132
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
+ + +++GL H++ Y L + ++ A
Sbjct: 133 LGDVG--NAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV 190
Query: 636 TLECEP 641
+ P
Sbjct: 191 SARTMP 196
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196
+L++ +VR D G Y C + + A+ L V+ P P
Sbjct: 82 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPG 125
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.4 bits (106), Expect = 3e-06
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 27/125 (21%)
Query: 7 EFRVQPKSQRVAA--GDTALLEC--GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN 62
+FRV + A GD A L C P + + W ++ + + D
Sbjct: 2 QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQ 61
Query: 63 ---------------------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
L IQ+ R +D+G Y C ++ + E+ L+V P+
Sbjct: 62 APEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA-VELKVED-PF 119
Query: 102 IIRGP 106
P
Sbjct: 120 YWINP 124
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 5e-06
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
G +L + +V D G YTC + + L+ E P
Sbjct: 79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
LV + L L W+ + L Y++ + ++
Sbjct: 3 SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ---------------DEE 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V P + +T L TY VR L G SP
Sbjct: 48 WHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSP 85
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 8e-04
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
+ L W G + ++ + + LLT L Y
Sbjct: 15 EPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRV-----LLTKLQPDTTYI 69
Query: 714 VSLAATNRAGTGPYSRP 730
V + G GP+S
Sbjct: 70 VRVRTLTPLGPGPFSPD 86
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156
L K + P+ +V + +C + + + S +
Sbjct: 3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQW-----FHNESLISSQASSYFID 57
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTV 185
+ D+GEY C+ + S L V
Sbjct: 58 AATVNDSGEYRCQTNLSTL--SDPVQLEV 84
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.002
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P V+ P ++ + L+CQ + + + S +
Sbjct: 4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHN----ESLISSQASSYFIDAA 59
Query: 352 TKEDSGEYTCVVKSPHGSAS 371
T DSGEY C S
Sbjct: 60 TVNDSGEYRCQTNLSTLSDP 79
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.002
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
++P+ V D+ L+C + + W N I + S I
Sbjct: 8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY---------FIDA 58
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ D G Y+C S L V
Sbjct: 59 ATVNDSGEYRCQTNLSTL---SDPVQLEV 84
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + ++A + W G + + Y++E ++
Sbjct: 1 PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVE-------------GSMQ 46
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ P + L+ TY V+AL+ G S
Sbjct: 47 ICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSE 84
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.002
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+ PQ+T +AT + W+ P ++ + Y++ GG S +
Sbjct: 2 DQCKPPQVTC---RSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSM--QICYCGPGL 54
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+ + LS Y + A + G GP+S
Sbjct: 55 SYEIKGLSPATTYYCRVQALSVVGAGPFSEVV 86
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 15/98 (15%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PP + + + T +T++W + + + T ++
Sbjct: 4 PPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQ---------------TPIQRT 48
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
T+T L G Y + LN + S+P +
Sbjct: 49 IKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVID 86
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 3e-06
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 15/101 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P TL + + L L W+ + V+ T
Sbjct: 3 PWAPENLTLHKLSESQLELNWNNRFLNHCLE---HLVQYR------------TDWDHSWT 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ ++ ++ YTF VR+ + + S+
Sbjct: 48 EQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 88
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 3e-06
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S ++ ++ + T + L L W S LL + V S P P
Sbjct: 1 SGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPL------L 54
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + +L G Y+ + L +
Sbjct: 55 QRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI 94
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-06
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
G P P + + W + + Y ++ S
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDS---------------ESEAH 47
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ P + +TNL Y V A + G S
Sbjct: 48 LLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSS 84
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLL 702
G PQ + + + W P +G Y++ +S + + P++
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 57
Query: 703 LTNLSAGIRYSVSLAATNRAGTGPYSRP 730
LTNL Y + + A G GPYS
Sbjct: 58 LTNLYPYCDYEMKVCAYGAQGEGPYSSL 85
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
K S + W + + Y D + +L + +T L Y
Sbjct: 9 NAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLD----SKVPSVELTNLYPY 64
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
YE + + +G S+L + RT +
Sbjct: 65 CDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-06
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PT T L+ W+ N + + + + P +
Sbjct: 2 APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGP--------------MKEIN 47
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
S + V+ L V Y V AL S P+
Sbjct: 48 LAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPA 82
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q + V D+ L C + + + + + L I +
Sbjct: 8 LQVTNTTVKELDSVTLTCLS---NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIK 64
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ D G YQC + N R S L ++ P
Sbjct: 65 REDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQL 155
+ +P++ +TTV + C S +RM++ + L++
Sbjct: 3 VTQPFLQ--VTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAP 189
++ EDAGEY CE N V S S L + P
Sbjct: 61 DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 4e-06
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 398 PGPPTKPTLVNQTANG--LTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
P PP T+ N L++ W + S L +++ + T
Sbjct: 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYR-----------AERSKT 50
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ + + GL + +RA G S S E +
Sbjct: 51 FTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAM 97
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 13/81 (16%), Positives = 28/81 (34%)
Query: 650 PVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAG 709
V N + + W+ P + +++ + V ++ + +G
Sbjct: 12 AVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSG 71
Query: 710 IRYSVSLAATNRAGTGPYSRP 730
+R+ V L A G G +S
Sbjct: 72 LRHVVQLRAQEEFGQGEWSEW 92
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 5e-06
Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P++ + + T + W + L Y ++
Sbjct: 2 LDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKD--------------VPGDRTT 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ ++ NL Y + + S P+
Sbjct: 48 IDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPA 84
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 12/95 (12%), Positives = 23/95 (24%), Gaps = 16/95 (16%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P T L W+ + LL + + +
Sbjct: 4 APRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQT--------------QEILLP 49
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ S + L +Y ++A+ L P
Sbjct: 50 GGITS--HQLLGLFPSTSYNARLQAMWGQSLLPPV 82
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 8e-06
Identities = 11/104 (10%), Positives = 22/104 (21%), Gaps = 11/104 (10%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PT T+ + N + W + + +
Sbjct: 3 TPTNVTIESYNMN-PIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNI-- 59
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + V+A SA + + V R
Sbjct: 60 --------SDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCR 95
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 8e-06
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 14 SQRVAA--GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---------LVDGTN 62
SQ++ P P ++WKK + + R +D +
Sbjct: 2 SQQIYGVVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
L I + +D+ Y+ N+ T + L VL
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFF---LYVL 93
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 15/93 (16%)
Query: 106 PKDTTVSASSIIVFECSVG--GDAVLTVHWKRLGSAMPEDRMSVLPSR-----------S 152
+ + F VL K + + S S
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
L + ++ D EY E+ N + L V
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYV 92
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 5e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
T GSL + ++T D EY + + +
Sbjct: 57 TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFF 89
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 8e-06
Identities = 17/93 (18%), Positives = 29/93 (31%)
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697
E + + + V L W+ P V+ G L + +
Sbjct: 1 EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFA 60
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ YSV + AT+ AG G ++ P
Sbjct: 61 LERGCRLRGLSPGNYSVRIRATSLAGNGSWTEP 93
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 10/98 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
T N + L W + +L GD
Sbjct: 5 DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRY---------GDEELHLCDT 55
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ L+ G Y+ +RA + G + +
Sbjct: 56 RKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE 92
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 8e-06
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P+ + T N L ++W + GY ++ P V
Sbjct: 3 APSNLRFLATTPNSLLVSWQPPRARIT----GYIIKYEKPGSPP----------REVVPR 48
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
T+T L G YT V AL ++ S P
Sbjct: 49 PRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 82
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 43.4 bits (101), Expect = 9e-06
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 2/92 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN--MTVSAST 698
P P ++++ W P P HN Y + +A
Sbjct: 4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 63
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++ + ++Y + + A N G +
Sbjct: 64 NNIVIADQPTFVKYLIKVVAINDRGESNVAAE 95
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 9e-06
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 12/100 (12%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWK------------RLGSAMPEDRMS 146
+ + + ++ + C+ G + V WK +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ V ED G Y C G + +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---------VD 59
R+ + L C G P + WK + ++
Sbjct: 8 HSSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 60 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
T + + + D G Y C+V G ++++V
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKLIV 104
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-05
Identities = 10/100 (10%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSL--IYPGDRVDNIQAEIT 245
+ V ++R+ C G P W + + + +++ +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + ++V+R C+ G+ + +
Sbjct: 64 TFLPTGITFKSVTREDT-GTYTCMVSEEGGNSYGEVKVKL 102
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (99), Expect = 9e-06
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 16/98 (16%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + + ++L W++ + + + V
Sbjct: 3 SPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGI----------------SSEVT 46
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
T+T+L G Y + A S S +
Sbjct: 47 VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 84
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PPT N + + + W+ L + V ++
Sbjct: 3 PPTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPV----------KNEEDVAELS 49
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + +TNL G Y V ++ S P
Sbjct: 50 ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 84
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 9e-05
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ ++ + W PPP + Y + N + +++S S ++LTNL G Y
Sbjct: 12 IGPDTMRVTWAPPPSIDLTNFLVRYSPV---KNEEDVAELSISPSDNAVVLTNLLPGTEY 68
Query: 713 SVSLAATNRAGTGP 726
VS+++
Sbjct: 69 VVSVSSVYEQHEST 82
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ ++++TW + + + + VA L++ + + ++T L
Sbjct: 8 RFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPG 65
Query: 611 SRYEFFLVPFFGSVDGKPSNLRA 633
+ Y + + + P R
Sbjct: 66 TEYVVSVSSVYEQHESTPLRGRQ 88
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 634 VRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALI 690
TL P PQ +T + ++ + W+PP + V
Sbjct: 3 FSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAE 62
Query: 691 NMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT----SGPEP 741
+ +A + + L L + V++ + G S A + P P
Sbjct: 63 VIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHP 117
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 10/121 (8%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRP-----LPSSSPSG 448
S+ PG P+ +++ +G+ L+W + +L Y + R PS
Sbjct: 4 GSSGPGAPSTVR-ISKNVDGIHLSWEPPTSPSGN-ILEYSAYLAIRTAQMQDNPSQLVFM 61
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSE 508
+ T F + A N G P + L+G
Sbjct: 62 RIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKG---YGPATQIRWLQGNSKS 118
Query: 509 G 509
G
Sbjct: 119 G 119
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PT + TAN T+ W +++ GY++ + P + RV
Sbjct: 3 SPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHH--------PEHFSGRPREDRVP 50
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
+ S +T+TNLT G Y + ALN S
Sbjct: 51 HSRNS--ITLTNLTPGTEYVVSIVALNGREESPL 82
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ A S + W P T G + G V S ++ LTNL+ G Y
Sbjct: 12 ITANSFTVHWIAPR-ATITGYRIRHHPEHFSGRPRE---DRVPHSRNSITLTNLTPGTEY 67
Query: 713 SVSLAATNRAGTGP 726
VS+ A N P
Sbjct: 68 VVSIVALNGREESP 81
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 398 PGPPTKPTLV-NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P P+ + + + T N L W + + R T
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLP---TSFILKSFRSRADCQY--QGDTIPDC 59
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS---DEIV 501
+ + NL + V+A N G S L ++V
Sbjct: 60 VAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVV 107
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 12/72 (16%), Positives = 23/72 (31%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEY 359
+ R + ++ E + ++T + S+V+ + D G Y
Sbjct: 21 SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTY 80
Query: 360 TCVVKSPHGSAS 371
CVV A
Sbjct: 81 ECVVLKYEKDAF 92
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.003
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 17 VAAGDTALLEC--GPPRGHPEPTLVWKKNGHP-------------IDFENSKRLRLVDGT 61
+ A L C T ++ + +++N + +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLVK 99
++ I R +D+G Y+CVV + A + + VK
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + A+ + W + S +L Y ++ + T +
Sbjct: 6 PNAPKLTG-ITCQADKAEIHWEQQGDN-RSPILHYTIQFNT---------SFTPASWDAA 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ V ++ YTF V A N G S PS SD
Sbjct: 55 YEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT 98
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+ P+LT + A + W+ + T Q S +T
Sbjct: 4 DVPNAPKLTG-ITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + +S Y+ + A N+ G P S
Sbjct: 63 SSFVVQMSPWANYTFRVIAFNKIGASPPSAH 93
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV--IRTYQIIVGGGNNSALINMTVSAST 698
P P +L+ ++ + W + H + R Y + + +A+T
Sbjct: 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+ L+T L Y S+ T + +S A
Sbjct: 61 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 93
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 8/98 (8%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PP + + + + W+ N+ + + +
Sbjct: 2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA--------NTKY 53
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
N + VT L Y F V S S
Sbjct: 54 KNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSM 91
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 551 EVKPMTSTSVKLTWE---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
+ ++ ++++TW + I Y+ +LVTGL
Sbjct: 9 QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGL 68
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
+ YEF ++ G S T E
Sbjct: 69 KPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 99
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 15/119 (12%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVE-------MYSRPLPSSSPSGDTAT 452
K + + + + + L W LLG+ + + + ++ T
Sbjct: 4 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWT 63
Query: 453 ATWV------RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLS--APSPLSDEIVLR 503
+ + P + L Y V+ L + SD I ++
Sbjct: 64 VVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 11/108 (10%)
Query: 398 PGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P PP ++ + ++ L L W+ + L S + +T
Sbjct: 5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
TV +L Y F +R + G S S+E
Sbjct: 65 SSF---------TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 103
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 3e-05
Identities = 8/100 (8%), Positives = 25/100 (25%), Gaps = 12/100 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + + + W + + + ++ + +
Sbjct: 4 PEKPKNLSCIVNEGKKMRCEWDGGRETHLET--NFTLKSEWATHKFA----------DCK 51
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ P+ + + V A N+ G ++
Sbjct: 52 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 91
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 9/97 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P + + + L WS + + GY +
Sbjct: 7 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSA---------GEYFKA 57
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + L Y F +++ ++ S S
Sbjct: 58 TIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFS 94
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.0 bits (84), Expect = 0.001
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR-TYQIIVGGGNNSALINMTVSAST 698
+P VP+L + + T+V+L W + + A
Sbjct: 5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHA 64
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + L Y L + + A +S
Sbjct: 65 RSFKIAPLETATMYEFKLQSFSAASASEFS 94
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 4e-05
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
TS+L+ W P V G NS + TV S T ++ L G+ Y+
Sbjct: 9 TPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYT 64
Query: 714 VSLAATNRAGTGPYS 728
+++ A G P S
Sbjct: 65 ITVYAVTGRGDSPAS 79
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS 464
+V T L ++W ++ Y++ +G + V + +
Sbjct: 4 EVVAATPTSLLISWDAPA----VTVRYYRITYG--------ETGGNSPVQEFTVPGSKST 51
Query: 465 PILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
T++ L G+ YT V A+ G S S S I +
Sbjct: 52 --ATISGLKPGVDYTITVYAVTGRGDSPAS--SKPISINYR 88
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T TS+ ++W+ + I + V TV G S ++GL
Sbjct: 4 EVVAATPTSLLISWDA-PAVTVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPG 60
Query: 611 SRYEFFLVPFFGSVDGKPS 629
Y + G D S
Sbjct: 61 VDYTITVYAVTGRGDSPAS 79
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 5e-05
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 12/100 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + + N + + + + G S + Y V + + + V
Sbjct: 1 PSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ + + Y V A N G S +
Sbjct: 60 LKSLDWNA-----------EYEVYVVAENQQGKSKAAHFV 88
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 5e-05
Identities = 17/111 (15%), Positives = 26/111 (23%), Gaps = 10/111 (9%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
EP P A L L+W + R S
Sbjct: 2 EPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEAS--------- 52
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + + + L YT +R + S S + LR
Sbjct: 53 -WALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 5e-05
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 641 PSGVPQ-LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
P P L + + + W+ G T G NS + V A
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNS--LEEVVHADQS 58
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGP 726
+ NLS G+ Y+VS+
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESV 85
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 13/98 (13%)
Query: 398 PGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PPT L G LT++W R+ + + GY++ + + A
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
T NL+ GL Y V + S P
Sbjct: 59 SC---------TFDNLSPGLEYNVSVYTVKDDKESVPI 87
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 40.4 bits (93), Expect = 6e-05
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 7/87 (8%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
K + P+ V + C + ++
Sbjct: 4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQW-----FHNGNLIPTHTQPSYRFKA 58
Query: 159 RLEDAGEYVCEAENAVGKISASATLTV 185
D+GEY C+ S LTV
Sbjct: 59 NNNDSGEYTCQTGQTSL--SDPVHLTV 83
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+++P+ V D+ L C ++ W NG+ I
Sbjct: 7 LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPS---------YRFK 57
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ D G Y C + S L VL
Sbjct: 58 ANNNDSGEYTCQTGQTSL---SDPVHLTVL 84
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Score = 40.7 bits (95), Expect = 6e-05
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT---GDG 344
P V +F + L L C V ++ W + V G D
Sbjct: 5 VPEVTVFSK--SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH 62
Query: 345 S---LVLTDVTKEDSGEYTCVVK 364
S + Y C V+
Sbjct: 63 SFFKISYLTFLPSADEIYDCKVE 85
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (95), Expect = 6e-05
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTC-VVKSPHGSASWSASLR 377
R + +GSL+ +T +D G YT + + +
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFH 105
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.4 bits (94), Expect = 9e-05
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 16/103 (15%)
Query: 10 VQPKSQRVAAGDTALLEC--------------GPPRGHPEPTLVWKKNGHPIDFEN--SK 53
++ +VA + LL G + + N + S
Sbjct: 4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63
Query: 54 RLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
R + +L Q D G Y + + R V
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.0 bits (85), Expect = 0.002
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 142 EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185
R + + SL + ++D G Y + + + A+ V
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 8e-05
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PT+ +N T L W + + ++
Sbjct: 1 PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGA----------------PPLQ 44
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
T + + +L + YT VR L L++P+ ++
Sbjct: 45 AETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASIT 84
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 8/105 (7%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P P P + T + + L W + + S +
Sbjct: 9 EPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEK--------RQGPQEQWLRFSIEEED 60
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V + V L Y F ++ + G SP
Sbjct: 61 PKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSP 105
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 398 PGPPTKPTL----VNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P PP TL + L + WS + + Y++ +
Sbjct: 3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPE----------- 51
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGL-SAPSP 495
A + V +L G Y R HG S S
Sbjct: 52 -EAEEWEIHFTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQ 96
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 17/108 (15%), Positives = 25/108 (23%), Gaps = 17/108 (15%)
Query: 398 PGPPTKPTL--VNQTANGLTLAW--SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P PP V L + W S L + + L
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD----------- 56
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ T+T+ G Y V A ++ S S
Sbjct: 57 -QWQHVELSNGTAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAH 102
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 16/98 (16%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + + T L+L W R L Y +
Sbjct: 2 NPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSG----------------KKNEME 45
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V S + L G YT + A S P+ +
Sbjct: 46 IPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIK 83
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+ +++++L D G Y C+ + A G + L V
Sbjct: 89 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.003
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
GD S+ +T++ D G Y C VK G A+ L
Sbjct: 86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 3e-04
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 4/117 (3%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S V T + PS P T VLL W+ + + Y++
Sbjct: 2 SSGSSGTVNVTTKKTPPSQPPGNVV-WNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + + + + ++ L+L Y + + AT G G S + + P
Sbjct: 61 SQNNVQVLNTNKTSAELVLPI---KEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 14/105 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PP+ V + + +L W ++++ DTAT +
Sbjct: 6 MAPPSLQ--VTKDGDSYSLRWETMKMRYEHIDHTFEIQYRK----------DTATWKDSK 53
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA--PSPLSDEI 500
T + + + L Y VR S S S+
Sbjct: 54 TETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEAR 98
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 3e-04
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P+ V ++ + + G +L Y+ E + + + W
Sbjct: 3 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRA-------VGEEVWHSKWYD 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
I+T+ L TY + ALN GL S S+
Sbjct: 55 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 95
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG----SVQWWRGEREVGSGPRVNVT------ 341
PP V +F P+ + +A L C G + WW +EV SG +
Sbjct: 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQP 63
Query: 342 --GDGSLVLT---DVTKED----SGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
D L+ V+ + C V+ S + + P +
Sbjct: 64 ALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIV 117
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 8e-04
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160
+ + DT + + + +V ++ ++L +S + L
Sbjct: 1 FGLTANSDTHLLQGQSLTLTLESPPGSSPSVQC------RSPRGKNIQGGKTLSVSQLEL 54
Query: 161 EDAGEYVCEAENAVGKISASATLTVQMAP 189
+D+G + C K+ + V
Sbjct: 55 QDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 83
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.003
Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 12/94 (12%)
Query: 8 FRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F + S + G + L P G G I + +
Sbjct: 1 FGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS----------VS 50
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
D G + C V E + VL
Sbjct: 51 QLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQ 83
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
T + V+ T + + L W+ N SS+++GY++ + +
Sbjct: 8 QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFE----------DF 54
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ TVT L G+ Y V L + G SAP+ L+
Sbjct: 55 VDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT 92
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 0.001
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT--GDGS 345
P + ++ L C V G + V + + +++ D S
Sbjct: 5 TPKIQVYSR--HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWS 62
Query: 346 ---LVLTDVTKEDSGEYTCVVK 364
L T+ T + EY C V
Sbjct: 63 FYLLYYTEFTPTEKDEYACRVN 84
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (86), Expect = 0.001
Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVTGDG- 344
P V P + T S L C V+G +V W G G V G
Sbjct: 3 TTAPSVFPLVPGSATAAA-SAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGL 61
Query: 345 ----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
S S TC+V H +S +A + E
Sbjct: 62 YTLSSNTTVASGTWPSASVTCLVA--HPKSSTAADKKIE 98
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.001
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 22/115 (19%)
Query: 398 PGPPT--KPTLVNQTANG----LTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
P PP TL+N + G + + W + +L Y+++
Sbjct: 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEV--------- 51
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T ++ + + + V +L V Y VR+ + S+ + +
Sbjct: 52 ---NETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVT 102
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS- 152
++ P + CS G W+ + +++ + S
Sbjct: 1 FKIETTP-----ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTST 55
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
L ++ V + Y+C A K+ + +
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGE-----REVGSGPRVNVTGDGSL 346
P P I + +PL +++CQ E + RE+G + D
Sbjct: 6 PMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
V+ + +G Y C + H +S +L
Sbjct: 65 VIDHMDANKAGRYQCQYRIGHYRFRYSDTL 94
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT------ 341
P V L P ++ L L L C RG + V+W +G +E+ +
Sbjct: 4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPS 63
Query: 342 -GDGSLVLT---DVTKED--SGE-YTCVVK 364
G + +T V ED G+ ++C+V
Sbjct: 64 QGTTTFAVTSILRVAAEDWKKGDTFSCMVG 93
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.8 bits (84), Expect = 0.002
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
S+ + ++ D G + C+ +N + ++ +T+
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.4 bits (83), Expect = 0.003
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
DGS+V+ ++ D+G +TC VK+P ++ +
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.1 bits (82), Expect = 0.003
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 14/97 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PT+ + + + + W+ LL Y + + + +
Sbjct: 4 IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYS--- 60
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V L G Y + A+ S S
Sbjct: 61 -----------VQALRPGSRYEVSISAVRGTNESDAS 86
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 398 PGPPTKPTL----VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P PP + + L + WS I + + + R P A
Sbjct: 3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTG-WFTLLYEIRLKPE--------KA 53
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + +L G Y VR HG S S ++
Sbjct: 54 AEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGY--WSAWSPATFIQ 101
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 977 | |||
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 99.58 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.57 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 99.55 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 99.54 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.53 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 99.52 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 99.49 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.49 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 99.49 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.49 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 99.49 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.48 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.48 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.47 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.47 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.47 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.46 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.46 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.45 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 99.45 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.45 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 99.44 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.44 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.44 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 99.44 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.44 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.43 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.43 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.43 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.42 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 99.42 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.42 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.41 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.41 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.41 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.41 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.41 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.41 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.4 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.4 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.39 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 99.39 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.39 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.39 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.38 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.38 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.38 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.37 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 99.37 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.36 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.36 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.36 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 99.35 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.35 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.35 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.34 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.34 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 99.34 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.33 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.32 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.32 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.31 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.31 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.31 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.31 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.31 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.31 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.31 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.3 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 99.3 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.3 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.29 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.29 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 99.29 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 99.29 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 99.28 | |
| d2cspa1 | 117 | Rim binding protein 2 {Human (Homo sapiens) [TaxId | 99.28 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.28 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.28 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 99.28 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.27 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 99.27 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.27 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.27 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.27 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.26 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 99.26 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 99.25 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 99.25 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.25 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.25 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.25 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.24 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.24 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 99.24 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.23 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.23 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.23 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.23 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.23 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.23 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.23 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.22 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.22 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.22 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.22 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.22 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 99.22 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.22 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.21 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.21 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.21 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.21 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.21 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 99.2 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.2 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.2 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.2 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.2 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.19 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.19 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.18 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.18 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.18 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.18 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.17 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 99.17 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.17 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.17 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.17 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.17 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.17 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.16 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 99.16 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.16 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.16 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.16 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.16 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.16 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.15 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 99.15 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.15 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 99.15 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.15 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 99.15 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 99.15 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.15 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.15 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.15 | |
| d2gysa2 | 114 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 99.14 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.14 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 99.14 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.14 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.14 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.13 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.13 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.13 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.13 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.12 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.12 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.12 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 99.12 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.12 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.12 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.11 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.11 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.11 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.11 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.11 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 99.11 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.11 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 99.1 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.1 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.1 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 99.1 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.1 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 99.1 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.1 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 99.1 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.1 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 99.09 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.09 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 99.09 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 99.09 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.08 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 99.07 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.07 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.07 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.06 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.06 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.06 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 99.05 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 99.05 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.05 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.05 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.05 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.05 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.05 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.04 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.04 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.03 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.03 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.02 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 99.02 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.02 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.01 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.0 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.0 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.0 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 98.99 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.99 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.98 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.98 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 98.96 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.96 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 98.95 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 98.95 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.95 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.95 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.94 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 98.94 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.94 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 98.93 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 98.93 | |
| d2cspa1 | 117 | Rim binding protein 2 {Human (Homo sapiens) [TaxId | 98.92 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 98.92 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.92 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.92 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 98.91 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 98.91 | |
| d1uc6a_ | 109 | Ciliary neurotrophic factor receptor alpha {Human | 98.9 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.9 | |
| d2gysa4 | 100 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.89 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.89 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 98.89 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 98.89 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 98.88 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.87 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.87 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 98.86 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 98.85 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 98.83 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 98.81 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.8 | |
| d2gysa2 | 114 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.79 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.79 | |
| d1fyhb1 | 98 | Interferon-gamma receptor alpha chain {Human (Homo | 98.76 | |
| d1uc6a_ | 109 | Ciliary neurotrophic factor receptor alpha {Human | 98.73 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.72 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 98.68 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 98.68 | |
| d2gysa4 | 100 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.67 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.65 | |
| d3d85d3 | 94 | The p40 domain of interleukin-12 (IL-12 beta chain | 98.63 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.59 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.58 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.53 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.48 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.42 | |
| d1y6kr1 | 99 | Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa | 98.41 | |
| d1fyhb1 | 98 | Interferon-gamma receptor alpha chain {Human (Homo | 98.41 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.38 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.36 | |
| d3d85d3 | 94 | The p40 domain of interleukin-12 (IL-12 beta chain | 98.36 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.3 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.29 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.22 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.22 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.21 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.21 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.18 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.18 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.18 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.17 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.17 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.16 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.16 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.16 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.16 | |
| d1y6kr1 | 99 | Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa | 98.14 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.14 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.13 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.12 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.12 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.12 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.11 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.11 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.11 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.07 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.05 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.04 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.04 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.03 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.02 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.01 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.0 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.0 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.0 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.0 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.99 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.97 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.96 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.96 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.95 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 97.95 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.95 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.95 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.93 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.93 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.93 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.92 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.91 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.9 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.9 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.9 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.89 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.89 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.88 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.88 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.87 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 97.87 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.85 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.84 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.84 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.84 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.83 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.82 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.82 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.81 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.8 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.8 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.79 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.78 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.78 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.78 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.78 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.77 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 97.77 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.74 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.73 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.71 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 97.71 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.69 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.69 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 97.68 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.66 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.65 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.65 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.64 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.64 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.64 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.63 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.63 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.63 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.62 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.61 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.61 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.6 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.6 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.59 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.58 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.58 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.58 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.58 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.56 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.54 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.54 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.54 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.53 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.53 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.52 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.52 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.51 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.51 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.5 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.5 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.5 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.46 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.46 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.46 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.44 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.43 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.43 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.41 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.41 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.4 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.39 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.38 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.38 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.35 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.34 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.34 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.33 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.33 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.32 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.31 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.3 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.29 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.28 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.27 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.25 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.23 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.23 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.23 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.22 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.22 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.21 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.21 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.2 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.2 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.19 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.17 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.17 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.16 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.16 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.16 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.15 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.15 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.14 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.12 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.11 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.11 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.11 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.1 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.1 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.1 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.09 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.09 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.08 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.08 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.08 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.08 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.07 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.07 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.05 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.04 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.04 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.04 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.04 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.04 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.03 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.03 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.01 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.01 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.01 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.0 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.0 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.0 |
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-16 Score=144.53 Aligned_cols=108 Identities=31% Similarity=0.433 Sum_probs=94.9
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCc
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGI 710 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t 710 (977)
+.++|.+++|+.+|.++++...+.++|.|+|++|+....||.|.+|+|+|+..+ ........+.++.+++.|.+|+|++
T Consensus 2 v~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 81 (119)
T d1x5ha1 2 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGT 81 (119)
T ss_dssp CCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSC
T ss_pred EEEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCC
Confidence 567899999998999999999999999999999987888999999999998865 3333344567788999999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.|.|+|+|+|.+|.|++|+++.++|.+..
T Consensus 82 ~Y~~~V~A~n~~G~G~~S~~~~~~T~~~~ 110 (119)
T d1x5ha1 82 EYNFRVAALTINGTGPATDWLSAETFESD 110 (119)
T ss_dssp EEEEECEEEETTEEEEECCCEEEECCSSC
T ss_pred EEEEEEEEEcCCcCCCCCCCEEEEeCCCC
Confidence 99999999999999999999999986544
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.9e-16 Score=141.75 Aligned_cols=112 Identities=27% Similarity=0.318 Sum_probs=96.5
Q ss_pred ceeCCCCC-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcC
Q psy574 623 SVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTP 699 (977)
Q Consensus 623 ~g~g~~s~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~ 699 (977)
.|.|.++. .+.++|.+++|. +|.++++...+.++|.|+|++| ...+|.|.+|.|+|+..+ ..........++.+
T Consensus 2 ~G~G~pss~~v~~~T~~~~P~-~P~~~~~~~~~~~sv~v~W~~P--~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~ 78 (117)
T d1wfoa1 2 IGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITHRLNTTTANTATVEVLAPSAR 78 (117)
T ss_dssp CCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCC--SCCCSCCCEEEEEEEESSCCCSCCCEEEECTTCC
T ss_pred ccCCCCCCCCEEEECCCCCCc-CCCCcEEEEecCCEEEEEEECC--CCCCCceEEEeeeeeeccCCCceEeEEecCCceE
Confidence 57787764 688999999996 8999999999999999999988 667899999999998865 33334455677889
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
+++|.+|+|++.|.|+|+|+|.+|.|++|+.+.++|.+
T Consensus 79 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~e 116 (117)
T d1wfoa1 79 QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 116 (117)
T ss_dssp EEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSS
T ss_pred EEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECCC
Confidence 99999999999999999999999999999998887753
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2e-15 Score=134.36 Aligned_cols=103 Identities=31% Similarity=0.446 Sum_probs=88.8
Q ss_pred EeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-----CcceEEEEecCCcCeEEecCCCC
Q psy574 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-----NSALINMTVSASTPTLLLTNLSA 708 (977)
Q Consensus 634 ~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-----~~~~~~~~~~~~~~~~~l~~L~p 708 (977)
++|.+++|++||.++++...+++++.|+|++|+....+|.+.+|.|.|+..+ ..........+..++++|.+|+|
T Consensus 1 v~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 80 (109)
T d1va9a1 1 ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKK 80 (109)
T ss_dssp SCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCS
T ss_pred CCCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCc
Confidence 3688999999999999999999999999999987788899999999998865 11222233456678999999999
Q ss_pred CceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 709 GIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 709 ~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
++.|.|+|+|+|.+|.|++|+++.++|.
T Consensus 81 ~t~Y~~~V~a~n~~G~g~~S~~v~~~T~ 108 (109)
T d1va9a1 81 FAQYGVVVQAFNRAGTGPSSSEINATTL 108 (109)
T ss_dssp SCCEEEEEEEEETTEECCCCCCEECCCC
T ss_pred ceEEEEEEEEEcCCcCCCCCCCEEEEcC
Confidence 9999999999999999999999998875
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.3e-15 Score=131.14 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=89.1
Q ss_pred EEeccCCCCCCCCceeEEEE--ecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCC
Q psy574 633 AVRTLECEPSGVPQLTDPVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLS 707 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~--~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~ 707 (977)
.++|.+.+|..||.++++.. .+.++|.|+|++| ...+|.|.+|.|+|+... ...+....+.++.++++|.+|+
T Consensus 3 ~~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P--~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 80 (111)
T d1x5ka1 3 HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELT 80 (111)
T ss_dssp SSCSCCCCCCSCCEEEEEEECSSCTTCEEEEEECC--SCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCC
T ss_pred ceEeCCCCCCCCCCCcEEEEecCCCCEEEEEEEcc--ccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCC
Confidence 46788999999999998775 3567999999998 778899999999998754 3334556677888999999999
Q ss_pred CCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 708 AGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 708 p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
|++.|.|+|+|+|.+|.|++|+++.++|..
T Consensus 81 p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~ 110 (111)
T d1x5ka1 81 LDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110 (111)
T ss_dssp SSSEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCEEEECCC
Confidence 999999999999999999999999998865
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.57 E-value=9e-15 Score=124.08 Aligned_cols=88 Identities=33% Similarity=0.492 Sum_probs=80.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
+|.|+..|.++.+.+|+++.|.|.+.|.|.|.|.|+||+..+..+......++.|.|.++..+|+|.|+|.|.|..|..+
T Consensus 1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (89)
T d1cs6a4 1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY 80 (89)
T ss_dssp EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEE
Confidence 47899999999999999999999999999999999999999976554444678999999999999999999999999999
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..+.|.|.
T Consensus 81 ~~~~l~V~ 88 (89)
T d1cs6a4 81 ASAELTVQ 88 (89)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999986
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.8e-15 Score=128.65 Aligned_cols=97 Identities=26% Similarity=0.353 Sum_probs=83.9
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
+++|+ +|.++++...+.++|.|+|++| .+.+|.|.+|+|+|+..+........+.+..++++|.+|+|++.|.|+|+
T Consensus 1 qa~P~-~p~~~~~~~~s~~si~v~W~~P--~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 77 (98)
T d1x5la1 1 QAAPS-QVVVIRQERAGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVR 77 (98)
T ss_dssp CCCCC-CCCCEECSCBCSSCEEEEECCC--SCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEE
T ss_pred CcCCC-CCCceEEEeccCCEEEEEEECC--CCCCCCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEE
Confidence 45675 7889999999999999999998 77889999999999986644444445566789999999999999999999
Q ss_pred EEcCCCcCCCCCceEEeecC
Q psy574 718 ATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 718 A~~~~G~g~~S~~~~~~t~~ 737 (977)
|+|.+|.|++|+++.|+|..
T Consensus 78 a~n~~G~g~~S~~v~~~T~~ 97 (98)
T d1x5la1 78 ARTSAGCGRFSQAMEVETGK 97 (98)
T ss_dssp EEETTEECCCCCCEEEECCC
T ss_pred EEcCCCCcCCCCCEEEEcCC
Confidence 99999999999999998863
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.5e-14 Score=130.28 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=90.0
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|.+|..+.++|.+.+|+.||.++. ...+.++|.|+|++|+..+.||.|++|+|+|+..+....... . ....+.+
T Consensus 1 G~s~~S~~v~v~T~~~~P~~pp~~~~-~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~--~-~~~~~~~ 76 (117)
T d1wj3a_ 1 GSSGSSGTVNVTTKKTPPSQPPGNVV-WNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL--N-TNKTSAE 76 (117)
T ss_dssp CCCCCCCCCCCCCSCCCCCCCCCSCB-CCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEE--E-ESSSEEE
T ss_pred CcCCCCCCEEEEcCCCCcCCCCcceE-EeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeee--e-ceeeEEE
Confidence 56788999999999999998887775 445788999999998778899999999999988653333222 2 2455677
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.+|.+++.|.|+|+|+|.+|.|++|+++.+.+..
T Consensus 77 ~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~~~ 110 (117)
T d1wj3a_ 77 LVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110 (117)
T ss_dssp EECCCSSCEEEEEEEEESSCCCCBCCCEEECCCC
T ss_pred eeccCCcEEEEEEEEEcCCccCCCCCCEEEeccC
Confidence 7999999999999999999999999998875443
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.7e-15 Score=130.46 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=85.4
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCc
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGI 710 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t 710 (977)
+.++|.+++|+ +|.++++...+.++|.|+|++| ...||.|.+|+|+|+..+ .............++++|.+|+|++
T Consensus 2 v~v~T~e~vP~-~p~~l~~~~~~~~sv~l~W~~P--~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 78 (106)
T d1wfna1 2 QLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALT 78 (106)
T ss_dssp CSCCSSCCSCC-CCSCCEEESCCSSEEEEECCCC--TTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTC
T ss_pred EEEEcCCCCCc-CCCCcEEEEecCCEEEEEEECC--CCCCCcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCC
Confidence 45789999997 8899999999999999999988 778999999999998866 4444555667788999999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceE
Q psy574 711 RYSVSLAATNRAGTGPYSRPAL 732 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~ 732 (977)
.|.|+|+|+|.+|.|++|....
T Consensus 79 ~Y~~~V~A~n~~G~g~~s~~~~ 100 (106)
T d1wfna1 79 TYTIEVAAMTSKGQGQVSASTI 100 (106)
T ss_dssp EEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCcCCcCCEE
Confidence 9999999999999999887543
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=1.3e-14 Score=122.99 Aligned_cols=88 Identities=26% Similarity=0.491 Sum_probs=78.0
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.|...|.++.+.+|+++.|.|.+ .|.|.|.|.|+|||..|.. ..++.+. ++.|.|.+++.+|+|.|+|+|.|..
T Consensus 1 kP~f~~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~--~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (89)
T d1cs6a4 1 QPDWLDVITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLAS--QNRIEVS-GGELRFSKLVLEDSGMYQCVAENKH 76 (89)
T ss_dssp EEEEEECCCCEEEETTCCEEEECEE-EEESCCEEEEEETTEECCC--CSSEEEE-TTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEEECCCEEECCCCcEEEEEEE-EEEcCCEEEEEEeeccccc--cceeeee-eeeEEEEeecccCCEEEEEEEEeCC
Confidence 5899999999999999999999999 8999999999999999953 3466665 6789999999999999999999999
Q ss_pred ceeeeEeEEEEEE
Q psy574 85 GTRESTDAVLRVL 97 (977)
Q Consensus 85 g~~~s~~~~l~V~ 97 (977)
|... ..+.|.|+
T Consensus 77 G~~~-~~~~l~V~ 88 (89)
T d1cs6a4 77 GTVY-ASAELTVQ 88 (89)
T ss_dssp EEEE-EEEEEEEE
T ss_pred CEEE-EEEEEEEE
Confidence 9755 46788886
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.53 E-value=1.9e-14 Score=126.71 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=82.3
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-Ccc-eEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSA-LINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
+++|..+|.++++...+.++|.|+|++++....||.|.+|.|.|+..+ ... ..........++++|.+|++++.|.|+
T Consensus 1 P~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 80 (105)
T d1cfba2 1 PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIK 80 (105)
T ss_dssp CCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEE
T ss_pred CCCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEE
Confidence 367888999999999999999999999877889999999999998865 333 333444677889999999999999999
Q ss_pred EEEEcCCCcCCCCCceEE
Q psy574 716 LAATNRAGTGPYSRPALL 733 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~ 733 (977)
|+|+|.+|.|++|.++.+
T Consensus 81 V~A~N~~G~gp~S~~~v~ 98 (105)
T d1cfba2 81 VVAINDRGESNVAAEEVV 98 (105)
T ss_dssp EEEEETTEECSSCCCCEE
T ss_pred EEEEeCCcCCCCCCCcEe
Confidence 999999999999977654
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.1e-14 Score=127.87 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=81.4
Q ss_pred cCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEE
Q psy574 637 LECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 637 ~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 716 (977)
...+|. +|.++++...++++|.|+|++| ...+|.|.+|.|+|+..+....... ..+.++++|.+|+|++.|.|+|
T Consensus 7 ~~~vP~-~P~~l~v~~~s~~si~l~W~~P--~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V 81 (103)
T d1x5ga1 7 EVQLPG-PAPNLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYMEKGTDKEQDV--DVSSHSYTINGLKKYTEYSFRV 81 (103)
T ss_dssp CSSCCC-CCSSCEEEEEETTEEEEECCCC--SCCSSCCSEEEEEEEETTCCCCCCE--EECSSEEEECSCCTTCEEEEEE
T ss_pred CCCCcc-cCCCcEEEEccCCEEEEEEECC--cCCCccEEEEEEEEEeCCCceeEEE--eccccEEecCCCCCCCEEEEEE
Confidence 335665 8889999999999999999988 7788999999999998664333332 3467899999999999999999
Q ss_pred EEEcCCCcCCCCCceEEeecC
Q psy574 717 AATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 717 ~A~~~~G~g~~S~~~~~~t~~ 737 (977)
+|+|.+|.|++|+++.++|.+
T Consensus 82 ~A~n~~G~g~~S~~v~v~T~e 102 (103)
T d1x5ga1 82 VAYNKHGPGVSTPDVAVRTLS 102 (103)
T ss_dssp EEECSSCCCCBCCCCCEECCC
T ss_pred EEEcCCcCcCCCCCEEEEcCC
Confidence 999999999999999998865
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.2e-14 Score=126.38 Aligned_cols=102 Identities=24% Similarity=0.379 Sum_probs=88.4
Q ss_pred EEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceE
Q psy574 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
.|+|.+.+|+ +|.++++...+.++|.|+|.+| ...++.|.+|.|+++..+..........+..+.+++.+|+|++.|
T Consensus 3 vf~T~~~~P~-~P~~~~~~~~~~~sv~l~W~pp--~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y 79 (105)
T d1x3da1 3 IFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGC 79 (105)
T ss_dssp CCCCCCSCCC-CCCCCEEEEEETTEEEEECCCC--CCCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEE
T ss_pred eEECCCCCCc-CCCCCEEEEccCCEEEEEEECC--CCCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEE
Confidence 4778888885 8999999999999999999998 677889999999998765444445555668899999999999999
Q ss_pred EEEEEEEcCCCcCCCCCceEEeecC
Q psy574 713 SVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.|+|+|+|..|.|++|+++.+.|..
T Consensus 80 ~frV~A~N~~G~s~~S~~~~~~T~g 104 (105)
T d1x3da1 80 KFRLSARNDYGTSGFSEEVLYYTSG 104 (105)
T ss_dssp EEECCEEESSCBCCCCCCEEEECSC
T ss_pred EEEEEEECCCeEcCCCCcEEEECCC
Confidence 9999999999999999999998753
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.2e-14 Score=122.08 Aligned_cols=94 Identities=26% Similarity=0.384 Sum_probs=79.8
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
|+.+ ..+++...+.++|.|+|++| ...+|.|.+|.|+|+..+...........+.+.++|.+|+|++.|.|+|+|+|
T Consensus 1 P~~~-~~l~~~~~t~~si~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 77 (95)
T d2djsa1 1 PSTV-PIMHQVSATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRART 77 (95)
T ss_dssp CCCC-SCCEEEEECSSEEEEECCCC--SCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEE
T ss_pred CCCC-CccEEEeecCCEEEEEEEEC--CCCCcceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEc
Confidence 4434 47888999999999999998 78899999999999987633333344456788999999999999999999999
Q ss_pred CCCcCCCCCceEEeecC
Q psy574 721 RAGTGPYSRPALLSLTS 737 (977)
Q Consensus 721 ~~G~g~~S~~~~~~t~~ 737 (977)
.+|.|++|+++.++|.+
T Consensus 78 ~~G~g~~S~~~~~~T~~ 94 (95)
T d2djsa1 78 VAGYGKFSGKMCFQTLT 94 (95)
T ss_dssp SSCEEEECCCEEEECCC
T ss_pred CCCCCCCCCCEEEEeCC
Confidence 99999999999998864
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.49 E-value=7.2e-14 Score=118.44 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=77.5
Q ss_pred CCeEEeCCCc-eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKD-TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~-~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.|...|.. ..+.+|+++.|.|.+.|.|.|.|.|+|++..+..+++.+ .+..|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 80 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDK 80 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEE-ETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEE-eeeeEEECCCChhhCEEEEEEEEECCCEE
Confidence 5778877755 578899999999999999999999999999998887766 45679999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
...+.|.|.
T Consensus 81 ~~~~~l~V~ 89 (89)
T d1biha4 81 YFETLVQVN 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 988888874
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.6e-14 Score=125.13 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=84.3
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCce
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~ 711 (977)
+.+.|.+++|+ +|.++++...++++|.|+|++|. ++.|.+|.|+|+..+......... ...++++|.+|+|++.
T Consensus 2 v~v~T~~~vP~-~P~~~~~~~~~~~si~l~W~~p~----~~~i~~Y~i~y~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~ 75 (102)
T d1x5za1 2 IQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR----SDTIANYELVYKDGEHGEEQRITI-EPGTSYRLQGLKPNSL 75 (102)
T ss_dssp CCCCCCSCCCC-CCEEEEEECSSSSEEEEEEECCS----CCCCCEEEECBEESSSCCCBCCEE-CSSSEEEEECCCTTCE
T ss_pred eEEECCCCCCc-CCCCeEEEEccCCEEEEEEECCC----CCCccceEEEEEeCCCCceEEEEc-CCcCEEEECCCCCCCE
Confidence 56788999996 88999999999999999999983 567999999998865333333333 3567999999999999
Q ss_pred EEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 712 YSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 712 Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
|.|+|+|+|..|.|++|.++.++|.+
T Consensus 76 Y~~~V~A~n~~G~g~~S~~v~~~T~e 101 (102)
T d1x5za1 76 YYFRLAARSPQGLGASTAEISARTMQ 101 (102)
T ss_dssp EEECEEEECSSCEEEECCCEEEECCC
T ss_pred EEEEEEEEcCCCEeCCCCCEEEEcCC
Confidence 99999999999999999999998864
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=7.7e-14 Score=121.87 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=85.3
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCCCCceEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
|..+|.++.+...+.++|.|+|++|+....+|.|.+|+|+|+..+ ........+.+...+++|.+|+|++.|.|+|+
T Consensus 1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~ 80 (101)
T d1x4ya1 1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ 80 (101)
T ss_dssp CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence 556899999999999999999998877889999999999999854 23344456677889999999999999999999
Q ss_pred EEcCCCcCCCCCceEEeecC
Q psy574 718 ATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 718 A~~~~G~g~~S~~~~~~t~~ 737 (977)
|+|..|.|++|+.+.++|..
T Consensus 81 a~n~~G~s~~S~~~~~~T~~ 100 (101)
T d1x4ya1 81 CFNEGGESEFSNVMICETKA 100 (101)
T ss_dssp EECTTCCCCCCCCEEEECCC
T ss_pred EEcCCCCCCCCCcEEEEccC
Confidence 99999999999999998864
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.5e-14 Score=122.81 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=86.1
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
|....|. +|.++++...+.++|.|+|++|. .+.+|.|.+|.|+|+..+ .............++++|.+|.|++.|.|
T Consensus 6 t~~~~P~-~P~~l~~~~~~~~sv~lsW~~P~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~ 83 (107)
T d1x5fa1 6 TTGPLPS-APRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIF 83 (107)
T ss_dssp CCCCCCC-CCEEEEEEEECSSCEEEEEECCS-SCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEE
T ss_pred CCCCCCc-CCCccEEEEecCCEEEEEEECCc-cCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEE
Confidence 4445565 88999999999999999999975 567889999999999866 45555556677889999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
+|+|+|..|.|++|.++.++|.+
T Consensus 84 rV~A~n~~G~g~~S~~i~v~T~~ 106 (107)
T d1x5fa1 84 RVMAQNKHGSGESSAPLRVETQP 106 (107)
T ss_dssp EEEEECSSCEEEECCCEEEECCC
T ss_pred EEEEEeCCCCcCCCCCEEEECCC
Confidence 99999999999999999998865
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.6e-14 Score=123.32 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=83.0
Q ss_pred eEEeccCCCCCCCCce-eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCc
Q psy574 632 RAVRTLECEPSGVPQL-TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGI 710 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~-v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t 710 (977)
+.++|.+++|. +|.+ +.+...++++|.|+|++|. ...+..+.+|.|+|+..+.............+.+.+.+|+|++
T Consensus 2 v~~~T~~~~P~-~P~~~~~~~~~~~~sv~l~W~~P~-~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 79 (107)
T d2crma1 2 VEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPPK-DNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGC 79 (107)
T ss_dssp CSCCSCCCCCC-CCCCCEEEEEEETTEEEEECCCCT-TCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTS
T ss_pred EEEECCCCCCc-CCCCCEEEeeecCCEEEEEEEECc-cCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCC
Confidence 56889999997 5555 4445678899999999883 3334579999999987664444445556788999999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
.|.|+|+|.|.+|.|++|+++.++|+
T Consensus 80 ~Y~~rV~A~n~~G~s~~S~~v~v~Tp 105 (107)
T d2crma1 80 FYRLRVYCISDGGQSAVSESLLVQTP 105 (107)
T ss_dssp CEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred EEEEEEEEECCCcCcCCCCcEEEECC
Confidence 99999999999999999999988774
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.8e-14 Score=128.17 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=92.1
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--------CcceEEEEecCCcCeEEe
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--------NSALINMTVSASTPTLLL 703 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--------~~~~~~~~~~~~~~~~~l 703 (977)
...+|.|++|+.+|.++++...+.++|.|+|++|+....++.|.+|.+.|+... ........+..+.+++.|
T Consensus 5 ~~~~s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 84 (125)
T d1uena_ 5 SSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGML 84 (125)
T ss_dssp CCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEE
T ss_pred ccccccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEE
Confidence 445678999999999999999999999999999965667899999999987642 122334456778899999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+|+|++.|.|+|+|+|..|.|++|.++.|+|.+..
T Consensus 85 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 120 (125)
T d1uena_ 85 PGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120 (125)
T ss_dssp ESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCC
T ss_pred CCCCCCCEEEEEEEEEeCCcccCCCCCEEEECCCCC
Confidence 999999999999999999999999999999997755
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.5e-14 Score=121.36 Aligned_cols=94 Identities=26% Similarity=0.338 Sum_probs=79.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-EEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|.|...|.++.+.+|+++.|.|.+ .|.|.+.|.|+|||+.|......++....++ +|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 79 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL 79 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence 567788999999999999999999 8999999999999999965544444444443 59999999999999999999999
Q ss_pred ceeeeEeEEEEEEcCCe
Q psy574 85 GTRESTDAVLRVLVKPY 101 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~ 101 (977)
|.. +..+.|.|..+|.
T Consensus 80 G~~-~~~~~l~V~~~P~ 95 (101)
T d2cqva1 80 GSR-QAQVNLTVVDKPD 95 (101)
T ss_dssp CEE-ECCEEEEEECSCS
T ss_pred CEE-EEEEEEEEEecCC
Confidence 975 4668999987764
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.48 E-value=8.3e-14 Score=120.73 Aligned_cols=95 Identities=26% Similarity=0.338 Sum_probs=79.1
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~ 79 (977)
|+-.|.|...+.++.+.+|+.++|.|.+ .|.|.|.|.|+|||..|.......+....++ .|.|.+++.+|+|.|+|+
T Consensus 1 s~eaP~f~~~~~~~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 79 (98)
T d1g1ca_ 1 SMEAPKIFERIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79 (98)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCcCCeEecCCCcEEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence 4557899999999999999999999999 8999999999999999965443333333343 699999999999999999
Q ss_pred EEecCceeeeEeEEEEEEc
Q psy574 80 VKNVAGTRESTDAVLRVLV 98 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~ 98 (977)
|.|..|.. +..+.|.|+.
T Consensus 80 a~N~~G~~-~~~~~L~V~~ 97 (98)
T d1g1ca_ 80 AINIAGET-SSHAFLLVQA 97 (98)
T ss_dssp EEETTEEE-EEEEEEEEEC
T ss_pred EEECCcEE-EEEEEEEEEE
Confidence 99999975 4567888874
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.47 E-value=3.5e-14 Score=122.90 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=77.0
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
+|.|...|.++.+.+|+++.|.|.+ .|.|.+.|.|+|||+.|.... ++.+..+ ..|.|.+++.+|+|.|+|+|.
T Consensus 1 ~P~f~~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 77 (97)
T d1koaa1 1 QPRFIVKPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELKQSV--KYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77 (97)
T ss_dssp SCEEEECCCCCEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCSBT--TBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred CCEEEEeCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEEeeeccceee--EEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence 6899999999999999999999999 899999999999999995443 4444332 259999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcC
Q psy574 82 NVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~ 99 (977)
|..|.. +..+.|.|...
T Consensus 78 N~~G~~-~~~~~l~V~~~ 94 (97)
T d1koaa1 78 NSYGTK-EEIVFLNVTRH 94 (97)
T ss_dssp ETTEEE-EEEECCEEECS
T ss_pred ECCCEE-EEEEEEEEeec
Confidence 999875 45678888754
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.47 E-value=9.2e-14 Score=121.43 Aligned_cols=92 Identities=24% Similarity=0.453 Sum_probs=78.5
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++|.|...|.++.+.+|+++.|.|.+ .|.|.|.|.|+|||..|......++....+ .+|.|.+++.+|+|.|+|+|.
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 85 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 85 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence 57889999999999999999999999 899999999999999996555444444443 369999999999999999999
Q ss_pred ecCceeeeEeEEEEEE
Q psy574 82 NVAGTRESTDAVLRVL 97 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~ 97 (977)
|..|.. +..+.|.|+
T Consensus 86 N~~G~~-~~~~~L~V~ 100 (102)
T d1fhga_ 86 NSLGEA-TCTAELLVE 100 (102)
T ss_dssp ETTEEE-EEEEEEEEE
T ss_pred ECCcEE-EEEEEEEEE
Confidence 999975 456788876
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=5.1e-14 Score=120.30 Aligned_cols=90 Identities=24% Similarity=0.495 Sum_probs=77.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++.|...|.++.+.+|+++.|.|.+ .|.|.|.|.|+|||+.+......++....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 1 k~~F~~~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 79 (92)
T d1epfa2 1 KLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 79 (92)
T ss_dssp CSEEEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred CcEEEEcCCCEEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECc
Confidence 4678999999999999999999999 899999999999999998777778888888899999999999999999999976
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
+.. .....|.|
T Consensus 80 ~~~-~~~~~i~V 90 (92)
T d1epfa2 80 RGE-INFKDIQV 90 (92)
T ss_dssp GTE-EEEEEEEE
T ss_pred CCE-EEEEEEEE
Confidence 532 23334444
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.4e-13 Score=117.79 Aligned_cols=90 Identities=23% Similarity=0.359 Sum_probs=77.9
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
++|.++++...++++|.|+|++| +|.+.+|.|+|+...........+....+.+.|.+|+|++.|.|+|+|+|.+
T Consensus 3 ~aP~n~~~~~~s~~si~l~W~~p-----~~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 77 (92)
T d1qg3a1 3 GAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQ 77 (92)
T ss_dssp CCCEEEEEEECSTTCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred CcCCCCEEEEccCCEEEEEEEec-----CCCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCC
Confidence 47899999999999999999988 3668899999988663333445556778999999999999999999999999
Q ss_pred CcCCCCCceEEeecC
Q psy574 723 GTGPYSRPALLSLTS 737 (977)
Q Consensus 723 G~g~~S~~~~~~t~~ 737 (977)
|.|++|+++.++|.+
T Consensus 78 G~g~~S~~~~~~T~e 92 (92)
T d1qg3a1 78 GEGPYSSLVSCRTHQ 92 (92)
T ss_dssp CBCCCCCCEEEECCC
T ss_pred cCcCCCCCEEEEcCC
Confidence 999999999998853
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.8e-14 Score=116.70 Aligned_cols=83 Identities=25% Similarity=0.416 Sum_probs=70.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|.|..+|.+..+.+|++++|.|.+ .|.|.| +|.|+|||+.+.... .+.+.|.....+|+|.|+|+|.|..
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~--------~~~~~l~~~~~~d~G~Y~C~A~N~~ 72 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPA--------PSPSVLNVTGVTQSTMFSCEAHNLK 72 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSE--------ESSEEEEECCCSSCEEEEEEEEETT
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCC--------CcceEEecCCccccEEEEEEEEcCC
Confidence 789999999999999999999999 899987 899999999994322 2335566666789999999999999
Q ss_pred ceeeeEeEEEEEE
Q psy574 85 GTRESTDAVLRVL 97 (977)
Q Consensus 85 g~~~s~~~~l~V~ 97 (977)
|...++.+.|.|+
T Consensus 73 G~~~S~~~~v~Vk 85 (85)
T d1rhfa2 73 GLASSRTATVHLQ 85 (85)
T ss_dssp EEEECCCEEEEEC
T ss_pred CcEEEEEEEEEEC
Confidence 9888888888874
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-13 Score=118.18 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=79.0
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
||.++++...+.++|.|+|++| .+.++.|.+|.|+|+..+........+..+.++++|.+|+|++.|.|+|+|+|.+|
T Consensus 3 ~P~~~~~~~~~~~sv~l~W~~p--~~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G 80 (93)
T d2vkwa2 3 APKLEGQMGEDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 80 (93)
T ss_dssp CCEEEEEECTTSSCEEEEEECC--CCTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred CCccCEeEEcCCCEEEEEeeCC--CCCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCCC
Confidence 7899999999999999999999 77888999999999987655555566788899999999999999999999999999
Q ss_pred cCCCCCceEEeec
Q psy574 724 TGPYSRPALLSLT 736 (977)
Q Consensus 724 ~g~~S~~~~~~t~ 736 (977)
.|.+|. +.|+|.
T Consensus 81 ~s~ps~-~~~~T~ 92 (93)
T d2vkwa2 81 KSKAAH-FVFRTA 92 (93)
T ss_dssp ECCCEE-EEEECC
T ss_pred CcCCEe-EEEEec
Confidence 999985 566653
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=3e-13 Score=115.76 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 640 ~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
+|+.+|.+|++...+.++|.|+|++|. ...+|.+.+|+|+|+..+.... .. ...++++|.+|+|++.|.|+|+|+
T Consensus 1 a~p~~p~~L~~~~~~~~si~vsW~~p~-~~~~~~~i~Y~i~~~~~~~~~~--~~--~~~t~~~i~~L~p~t~Y~~rV~A~ 75 (94)
T d1x5aa1 1 AESLSGLSLKLVKKEPRQLELTWAGSR-PRNPGGNLSYELHVLNQDEEWH--QM--VLEPRVLLTKLQPDTTYIVRVRTL 75 (94)
T ss_dssp CCCCCSCCCCEEEEETTEEEEECCCCC-SSCCSSCCEEEEEEECSSCEEE--EE--ESSSEEEEESCCSSCEEEEEEEEE
T ss_pred CcCCCCCceEEEEcCCCEEEEEEeccc-CCCCCcEEEEEEEEecCCceEE--Ee--eccCEEEECCCCCCCEEEEEEEEE
Confidence 355688999999999999999999985 3456677799999988543222 22 256899999999999999999999
Q ss_pred cCCCcCCCCCceEEeecC
Q psy574 720 NRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 720 ~~~G~g~~S~~~~~~t~~ 737 (977)
|.+|.|++|+.+.++|.+
T Consensus 76 n~~G~g~~S~~~~~~T~P 93 (94)
T d1x5aa1 76 TPLGPGPFSPDHEFRTSP 93 (94)
T ss_dssp CSSSCCCCCCCEEEECCC
T ss_pred cCCcCcCCCCCEEEEeCC
Confidence 999999999999998853
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.45 E-value=5.2e-14 Score=121.04 Aligned_cols=90 Identities=23% Similarity=0.436 Sum_probs=74.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-|.|..+|.++.+.+|++++|.|.+ .|.|.+ .|.|+|||+.+............+++|.|.+++.+|+|.|+|+|.|.
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 80 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETP 80 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEe-cCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeC
Confidence 3788899999999999999999999 777765 79999999999654444444445688999999999999999999999
Q ss_pred CceeeeEeEEEE
Q psy574 84 AGTRESTDAVLR 95 (977)
Q Consensus 84 ~g~~~s~~~~l~ 95 (977)
.|...+..+.|.
T Consensus 81 ~G~~~s~~v~l~ 92 (94)
T d1biha1 81 AGVASSRVISFR 92 (94)
T ss_dssp TEEEECCCEEEE
T ss_pred CCEEEEEEEEEE
Confidence 998766665554
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.3e-13 Score=119.32 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=72.9
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEE-EEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-MTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
|+.+|.++.+...+.++|.|+|++|. ...++.|++|.|+|+..+...+.. .....+.+++++.+|.+++.|.|+|+|+
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~pP~-~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~ 79 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRPPD-RIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 79 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEECCS-CCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEE
T ss_pred CCCCCcCcEEEEccCCEEEEEEECCC-cCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEE
Confidence 45689999999999999999999873 444557999999999876433332 2345567899999999999999999999
Q ss_pred cCCCcCCCCCc
Q psy574 720 NRAGTGPYSRP 730 (977)
Q Consensus 720 ~~~G~g~~S~~ 730 (977)
|.+|.|++|..
T Consensus 80 n~~G~s~~s~~ 90 (98)
T d1x5ya1 80 NIAGRSEPATL 90 (98)
T ss_dssp ETTEECCCCCC
T ss_pred CCCcCCCCcCC
Confidence 99999998764
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.44 E-value=3.4e-13 Score=117.72 Aligned_cols=89 Identities=30% Similarity=0.499 Sum_probs=79.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe--c--cceEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL--P--SRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~--~--~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.|...|.++.+.+|+++.|.|.+.|.|.+.+.|+|++..+..+ ++.+. . ..+|.|.+++.+|+|.|+|.|.|
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 86 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN 86 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence 4688999999999999999999999999999999999999998754 44443 2 34799999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy574 173 AVGKISASATLTVQ 186 (977)
Q Consensus 173 ~~g~~~~~~~L~V~ 186 (977)
..|..+.++.|.|.
T Consensus 87 ~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 87 SLGEATCTAELLVE 100 (102)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEEE
Confidence 99999999999886
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.44 E-value=1e-13 Score=118.83 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=77.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
|+|.|...+.++.+.+|+++.|.|.+ .|.|.|.+.|+|||..+.......+.... .+.|.|.+++.+|+|.|+|.|.|
T Consensus 1 l~P~i~~~~~~~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 79 (93)
T d1wiua_ 1 LKPKILTASRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79 (93)
T ss_dssp CCCEECCCCCEEEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred CCCeEEeCCCcEEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence 57999999999999999999999999 89999999999999998655544444443 34799999999999999999999
Q ss_pred cCceeeeEeEEEEEE
Q psy574 83 VAGTRESTDAVLRVL 97 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~ 97 (977)
..|.. +..+.|.|+
T Consensus 80 ~~G~~-~~~~~l~V~ 93 (93)
T d1wiua_ 80 ELGED-EAIFEVIVQ 93 (93)
T ss_dssp TTEEE-EEEEEEEEC
T ss_pred CCCEE-EEEEEEEEC
Confidence 99975 455777763
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.6e-13 Score=118.73 Aligned_cols=95 Identities=27% Similarity=0.404 Sum_probs=82.8
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~i~~L~p~ 475 (977)
+|++|.++.+..++.+++.|+|.+|...++.++.+|.|+|+..+.. .|.... .....+.+++.+|.++
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~L~~~ 69 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSE-----------EWVPANKEPVERCGFTVKDLPTG 69 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCC-----------CCEESSSSCBSSSEEEEECCCTT
T ss_pred CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcc-----------eeEEeeeecCceeEEEECCCcCC
Confidence 4889999999999999999999998877778899999999887654 787765 4567789999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
+.|.|+|+|.|..|.|++|..+..+++
T Consensus 70 ~~Y~frV~A~n~~G~s~~s~~~~~vtv 96 (98)
T d1x5ya1 70 ARILFRVVGVNIAGRSEPATLLQPVTI 96 (98)
T ss_dssp CCEEEEEEEEETTEECCCCCCSSCBCC
T ss_pred eEEEEEEEEECCCcCCCCcCCCCCEEe
Confidence 999999999999999999887776654
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.44 E-value=2e-13 Score=117.66 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=74.7
Q ss_pred CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEEE
Q psy574 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 640 ~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
.|..+|.++++...+.++|.|+|++|. ...++.|++|.|+|+..+ ...........+.++++|.+|+|++.|.|+|+
T Consensus 5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~-~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 83 (95)
T d2ibga1 5 DPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQ 83 (95)
T ss_dssp CCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCCCcCeEEEEeCCCEEEEEEEeee-eccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEE
Confidence 455588999999999999999999774 556788999999999865 33333445567889999999999999999999
Q ss_pred EEcCCCcCCCCC
Q psy574 718 ATNRAGTGPYSR 729 (977)
Q Consensus 718 A~~~~G~g~~S~ 729 (977)
|+|.+|.|++|.
T Consensus 84 A~n~~G~s~~Ss 95 (95)
T d2ibga1 84 SFSAASASEFSA 95 (95)
T ss_dssp EECSSCBCCCCC
T ss_pred EEeCCccCCCCC
Confidence 999999999983
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.43 E-value=4.5e-13 Score=115.97 Aligned_cols=90 Identities=27% Similarity=0.304 Sum_probs=78.8
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe--cc--ceEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL--PS--RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+||+..+..+ +.... .+ ..|.|.++..+|+|.|+|.|.|
T Consensus 3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 82 (98)
T d1g1ca_ 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 82 (98)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence 4688999999999999999999999999999999999999998654 33332 22 3799999999999999999999
Q ss_pred CCeeEEEEEEEEEee
Q psy574 173 AVGKISASATLTVQM 187 (977)
Q Consensus 173 ~~g~~~~~~~L~V~~ 187 (977)
..|..+..+.|.|..
T Consensus 83 ~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 83 IAGETSSHAFLLVQA 97 (98)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEEE
Confidence 999999999999863
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.43 E-value=1.7e-13 Score=118.48 Aligned_cols=90 Identities=23% Similarity=0.349 Sum_probs=78.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+|.|...|.++.+.+|+++.|.|.+.|.|.+.|.|+|++..+..+ ++.+. ....|.|.++..+|+|.|+|.|.|..
T Consensus 1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 80 (97)
T d1koaa1 1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 80 (97)
T ss_dssp SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence 488999999999999999999999999999999999999998653 44333 22469999999999999999999999
Q ss_pred eeEEEEEEEEEeeC
Q psy574 175 GKISASATLTVQMA 188 (977)
Q Consensus 175 g~~~~~~~L~V~~~ 188 (977)
|..+..+.|.|...
T Consensus 81 G~~~~~~~l~V~~~ 94 (97)
T d1koaa1 81 GTKEEIVFLNVTRH 94 (97)
T ss_dssp EEEEEEECCEEECS
T ss_pred CEEEEEEEEEEeec
Confidence 99999999998743
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.9e-13 Score=117.08 Aligned_cols=91 Identities=30% Similarity=0.412 Sum_probs=80.1
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. +++.+. ...+|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 80 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG 80 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence 6778889999999999999999999999999999999999865 455543 234799999999999999999999999
Q ss_pred eEEEEEEEEEeeCCe
Q psy574 176 KISASATLTVQMAPI 190 (977)
Q Consensus 176 ~~~~~~~L~V~~~p~ 190 (977)
..+..+.|.|...|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (101)
T d2cqva1 81 SRQAQVNLTVVDKPD 95 (101)
T ss_dssp EEECCEEEEEECSCS
T ss_pred EEEEEEEEEEEecCC
Confidence 999999999997664
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.43 E-value=2.4e-13 Score=115.10 Aligned_cols=86 Identities=24% Similarity=0.577 Sum_probs=72.6
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.|.|...|.+ +.+.+|+++.|.|.+ .|.|.|.|.|+|||+.|. ..|+.+. ++.|.|.+++.+|+|.|+|+|.|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~---~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~ 76 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLS---GGRATVT-DSGLVIKGVKNGDKGYYGCRATNE 76 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECC---SSSEEEE-TTEEEESSCCSTTCEEEEEEEEET
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCc---cccEEEe-eeeEEECCCChhhCEEEEEEEEEC
Confidence 4788888765 678999999999999 899999999999999993 3366665 556999999999999999999999
Q ss_pred CceeeeEeEEEEE
Q psy574 84 AGTRESTDAVLRV 96 (977)
Q Consensus 84 ~g~~~s~~~~l~V 96 (977)
.|.. +..+.|.|
T Consensus 77 ~G~~-~~~~~l~V 88 (89)
T d1biha4 77 HGDK-YFETLVQV 88 (89)
T ss_dssp TEEE-EEEEEEEE
T ss_pred CCEE-EEEEEEEE
Confidence 9975 45566665
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.4e-13 Score=122.02 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+..++|. +|.++++...+.++|.|+|++| .+.++.|.+|.|+|+..+ ...+.........+.++|.+|+|++.|.|
T Consensus 11 ~~~~~P~-pP~~~~v~~~~~~sv~l~W~p~--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f 87 (117)
T d1uema_ 11 DLSDLPG-PPSKPQVTDVTKNSVTLSWQPG--TPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF 87 (117)
T ss_dssp CSCCSCB-CCCCCEEEEECSSCEEEECCCC--BCSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred eeCccCc-CCCCCEEEEccCCEEEEEEECC--CcCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEE
Confidence 4456775 8899999999999999999987 677789999999988765 33444444455678999999999999999
Q ss_pred EEEEEcCCCcCCCCCce-EEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPA-LLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~-~~~t~~~~ 739 (977)
+|+|+|.+|.|++|++. .++|.+..
T Consensus 88 rV~A~N~~G~s~~S~~s~~v~t~~~~ 113 (117)
T d1uema_ 88 MVRAINPQGLSDPSPMSDPVRTQDSG 113 (117)
T ss_dssp EEEEEETTEEEEECCCCCCEECCCSS
T ss_pred EEEEEeCCcCCCCcCCCcCEEeCCCC
Confidence 99999999999999875 46665544
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=121.61 Aligned_cols=102 Identities=20% Similarity=0.312 Sum_probs=78.9
Q ss_pred ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEecCCcCeEEecCCCCC
Q psy574 631 LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVSASTPTLLLTNLSAG 709 (977)
Q Consensus 631 ~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~l~~L~p~ 709 (977)
.+.+++.+.+|. .|. +.+...+.++|.|+|.+| .+.++.|.+|.|+|+..+.. ......+..+.++++|.+|.|+
T Consensus 4 ~l~v~~~P~~P~-~p~-~~~~~~~~~sv~l~W~~P--~~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 79 (108)
T d1wf5a1 4 HLRVRQLPHAPE-HPV-ATLSTVERRAINLTWTKP--FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA 79 (108)
T ss_dssp CSSCCCCCCCCS-SCE-EEECSSSTTEEEEECCCC--CCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTT
T ss_pred ccEEecCCCCCC-CCE-EEEEeccCCEEEEEEECC--CCCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCC
Confidence 355666666664 332 444556788999999998 67788999999999986533 3333344667789999999999
Q ss_pred ceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 710 IRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
+.|.|+|+|+|.+|.|++|+++...|.
T Consensus 80 t~Y~frV~A~N~~G~s~~S~~~~~~t~ 106 (108)
T d1wf5a1 80 RSYQFRLCAVNDVGKGQFSKDTERVSL 106 (108)
T ss_dssp CEEEEEEEEEESSCEEEECCCCSCEEC
T ss_pred CEEEEEEEEEcCCcCCCCcCCcCCEEC
Confidence 999999999999999999998866553
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.7e-13 Score=116.25 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=76.5
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
+|.++++...++++|.|+|++| ...++.|.+|.|+|+..+.... .......++++|.+|+|++.|.|+|+|+|.+|
T Consensus 3 ~P~~~~v~~~s~~si~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G 78 (93)
T d1x4xa1 3 QCKPPQVTCRSATCAQVNWEVP--LSNGTDVTEYRLEWGGVEGSMQ--ICYCGPGLSYEIKGLSPATTYYCRVQALSVVG 78 (93)
T ss_dssp CCCCCCCEEEETTEEEEECCCC--SCSSSCCCEEEEEEESSTTSCC--EEEEESCSEEEEESCCSSCEEEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCeEEEEEEec--ccCCCeeEEEEEEEccCCCcce--EeecCCccEEEEcccceeeEEEEEEEEEECCc
Confidence 5667777888899999999998 6678899999999988553333 23455788999999999999999999999999
Q ss_pred cCCCCCceEEeecC
Q psy574 724 TGPYSRPALLSLTS 737 (977)
Q Consensus 724 ~g~~S~~~~~~t~~ 737 (977)
.|++|+.+.++|++
T Consensus 79 ~s~~S~~~~~~Tpp 92 (93)
T d1x4xa1 79 AGPFSEVVACVTPP 92 (93)
T ss_dssp CCCBCCCEEEECCC
T ss_pred CcCCCCcEEEEeCC
Confidence 99999999998864
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.2e-13 Score=116.28 Aligned_cols=86 Identities=26% Similarity=0.452 Sum_probs=73.0
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.|.++.+.+|++++|.|.+ .+.|.+.|.|+|||+.+......++....+ +.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 80 (91)
T d1rhfa1 2 APVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE 80 (91)
T ss_dssp CCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred cCeeEEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence 5889999999999999999 899999999999999995444334444433 369999999999999999999999987
Q ss_pred eeEeEEEEEE
Q psy574 88 ESTDAVLRVL 97 (977)
Q Consensus 88 ~s~~~~l~V~ 97 (977)
.+..+.|+|.
T Consensus 81 ~S~~~~l~V~ 90 (91)
T d1rhfa1 81 ISQPVWLTVE 90 (91)
T ss_dssp ECCCEEEEEE
T ss_pred EEEEEEEEEE
Confidence 7788888885
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.41 E-value=4.7e-13 Score=113.93 Aligned_cols=86 Identities=27% Similarity=0.509 Sum_probs=73.7
Q ss_pred CCeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+.. .|.++.+.+|++++|.|.+.|.|.|.|.|+|++...... ....++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 81 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE--eeeeeeEEEeCCCCccCCEEEEEEEEECCCEE
Confidence 456654 478889999999999999999999999999987665432 22356789999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|.|+
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1cs6a3 82 TYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999886
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.41 E-value=9.2e-14 Score=120.17 Aligned_cols=90 Identities=34% Similarity=0.582 Sum_probs=78.9
Q ss_pred cccceecccceEEeCC---CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G---~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.|..+|.++.+.+| ++++|.|.+ .|.|.|.|.|+|||..+......++....+..|.|..++.+|+|.|+|+|.
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 82 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT 82 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence 4789999999988876 799999999 899999999999999997766677777766778889999999999999999
Q ss_pred ecCceeeeEeEEEE
Q psy574 82 NVAGTRESTDAVLR 95 (977)
Q Consensus 82 n~~g~~~s~~~~l~ 95 (977)
|..|...|..+.|+
T Consensus 83 N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 83 NARGTVVSREASLR 96 (97)
T ss_dssp ETTEEEECCCEEEE
T ss_pred ECCCEEEEEEEEEe
Confidence 99998877777764
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-13 Score=135.13 Aligned_cols=180 Identities=9% Similarity=-0.056 Sum_probs=77.7
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
.+|.++++...++++|.|+|++| .++.+.+|.|+|+........ ..........|.+++.|.++|.+.+.
T Consensus 4 s~P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~--------~~~~~~~~~~~~~~~~y~~~v~~~~~ 75 (196)
T d2dtge2 4 SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSEL--------FELDYCLKGLKLPSRTWSPPFESEDS 75 (196)
T ss_dssp CCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSC--------TTCSSSCSCCCCCC------------
T ss_pred cCCcCCEEEeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCce--------eEEeeEEeccccceeEEEEEEEEEcC
Confidence 34589999999999999999999 667899999999987642111 12222333457788999999999998
Q ss_pred ceeCCCCCceEEeccCCCCC------CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecC
Q psy574 623 SVDGKPSNLRAVRTLECEPS------GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSA 696 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~------~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~ 696 (977)
.+.+..+....+.+....+. ..+..+.+.......+.+.|..+ ...+.....|.+.+...+ ..........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (196)
T d2dtge2 76 QKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVP--RPSRKRRSLGDVGNAGNN-EEHRPFEKVV 152 (196)
T ss_dssp -----------------------------------------------------------------------CCSCSCEEC
T ss_pred CccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCc--CCCccceEEEEEEeecCC-CccEEEEecc
Confidence 88776554343333222221 12334444455555667777666 222322233333333322 1112233445
Q ss_pred CcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceEEee
Q psy574 697 STPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPALLSL 735 (977)
Q Consensus 697 ~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~~~t 735 (977)
+.++++|.+|+|++.|.|+|+|+|.+|.|.. +..+.++|
T Consensus 153 ~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT 194 (196)
T d2dtge2 153 NKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART 194 (196)
T ss_dssp SCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred ceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeC
Confidence 7789999999999999999999999998864 34444444
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.1e-13 Score=120.74 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=81.9
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCC---CCCceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDP---PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
++..++...+..+++++|+|+|++| .++.|.+|+|+|+..+. ...|....+.. ...+++.|.+|+|++.|+|+|+
T Consensus 15 ~~~~v~l~~~~~~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~-~~~~s~~i~~L~p~t~Y~f~V~ 93 (120)
T d1ujta_ 15 GDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKV-PTERSAVLVNLKKGVTYEIKVR 93 (120)
T ss_dssp HHCCEEECCCCCCBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCC-TTCCEEEEESCCSSEEEEEEEE
T ss_pred CCcceeccCCEEeCCCeEEEEecCCCCCCcEEEEEEEeeecccCCCCcceEEEEecc-CceeEEEECCCCCCCEEEEEEE
Confidence 3445666677889999999999998 67789999999997764 34566666543 6778899999999999999999
Q ss_pred EeecceeCCCCCceEEeccCCC
Q psy574 619 PFFGSVDGKPSNLRAVRTLECE 640 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~~~ 640 (977)
|+|..|.|+.|+.+.++|.++.
T Consensus 94 A~n~~G~G~~S~~~~~~T~e~~ 115 (120)
T d1ujta_ 94 PYFNEFQGMDSESKTVRTTEES 115 (120)
T ss_dssp EESSSCCCCCCCCEEEEECSSC
T ss_pred EEeCCcCcCCCCCEEEEeCCCC
Confidence 9999999999999999998864
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.41 E-value=5.8e-13 Score=112.44 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=70.5
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
.+++....|.+|++++|.|.+..+.|.+.+.|+|||+.+.. ...++.|.|.+++.+|+|.|+|+|.|..|...
T Consensus 6 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~ 78 (89)
T d1fnla2 6 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 78 (89)
T ss_dssp EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-------EEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-------eccccccEECccceeccceEEEEEEeCCCCeE
Confidence 45666788999999999999856778889999999998832 12356899999999999999999999998877
Q ss_pred eEeEEEEEEc
Q psy574 89 STDAVLRVLV 98 (977)
Q Consensus 89 s~~~~l~V~~ 98 (977)
|..+.|+|++
T Consensus 79 S~~v~itV~E 88 (89)
T d1fnla2 79 SETVNITITQ 88 (89)
T ss_dssp CCCEEEEEEC
T ss_pred EeeEEEEEEe
Confidence 8888999875
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=7.2e-13 Score=116.80 Aligned_cols=89 Identities=24% Similarity=0.347 Sum_probs=74.4
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-Cc--ceEEEEecCCcCeEEecCCCCCceEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NS--ALINMTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~--~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
|+.+|.++++...++++|.|+|.++ .+.++.|++|.|+|+..+ .. ......+..+.+++++.+|+|++.|.|+|+
T Consensus 10 pP~~P~~~~v~~~~~~sv~l~W~p~--~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~ 87 (108)
T d1x4za1 10 PPEAPDRPTISTASETSVYVTWIPR--GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVR 87 (108)
T ss_dssp CCCCCCCCEEEECCSSEEEEECCCC--CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEE
T ss_pred CCccCCCCEEEEccCCEEEEEEECC--CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEE
Confidence 4458889999999999999999876 667778999999998855 22 234455677889999999999999999999
Q ss_pred EEcCCCcCCCCCce
Q psy574 718 ATNRAGTGPYSRPA 731 (977)
Q Consensus 718 A~~~~G~g~~S~~~ 731 (977)
|+|.+|.|++|++.
T Consensus 88 A~N~~G~s~~S~pS 101 (108)
T d1x4za1 88 ALNMLGESEPSAPS 101 (108)
T ss_dssp EEETTEECCCCCCC
T ss_pred EECCCcCCCCCCCC
Confidence 99999999988754
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.40 E-value=2.9e-13 Score=115.89 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+|.+...+.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .++.+. ....|.|.+++.+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~ 81 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence 68888889999999999999999999999999999999988764 344333 33579999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy574 175 GKISASATLTVQ 186 (977)
Q Consensus 175 g~~~~~~~L~V~ 186 (977)
|..+..+.|.|+
T Consensus 82 G~~~~~~~l~V~ 93 (93)
T d1wiua_ 82 GEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEEEEEEC
T ss_pred CEEEEEEEEEEC
Confidence 999999999874
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.1e-13 Score=121.34 Aligned_cols=101 Identities=37% Similarity=0.697 Sum_probs=87.7
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
..+|++|.++.+..++.++|.|+|.++.+ ++.++.+|.|+|+...... .|..+......+.++|.+|.|
T Consensus 13 ~~~P~pP~~~~v~~~~~~sv~l~W~p~~~-~~~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~v~~L~p 81 (117)
T d1uema_ 13 SDLPGPPSKPQVTDVTKNSVTLSWQPGTP-GTLPASAYIIEAFSQSVSN----------SWQTVANHVKTTLYTVRGLRP 81 (117)
T ss_dssp CCSCBCCCCCEEEEECSSCEEEECCCCBC-SSSCCCEEEEEEEETTTEE----------EEEEEEEEECSSEEEECSCCT
T ss_pred CccCcCCCCCEEEEccCCEEEEEEECCCc-CCCCeEEEEEEEeccCCce----------eeEEeccccccccceECCCCC
Confidence 46799999999999999999999997765 7788999999998765543 788887777889999999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccc
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~ 506 (977)
++.|.|+|+|+|..|.|++|..+..+++++..
T Consensus 82 ~t~Y~frV~A~N~~G~s~~S~~s~~v~t~~~~ 113 (117)
T d1uema_ 82 NTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113 (117)
T ss_dssp TCEEEEEEEEEETTEEEEECCCCCCEECCCSS
T ss_pred CCEEEEEEEEEeCCcCCCCcCCCcCEEeCCCC
Confidence 99999999999999999999988877774433
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5e-13 Score=116.38 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCC--CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGT--HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~--~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A 718 (977)
|..||.+|.+...++++|.|+|++|+... ..+.+..|.|+|+..+...........+.++++|.||+|++.|.|+|+|
T Consensus 1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 80 (100)
T d1x5ja1 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV 80 (100)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence 56689999999999999999999885322 3356788999998866444444556677889999999999999999999
Q ss_pred EcCCCcCCCCCceEEeecC
Q psy574 719 TNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 719 ~~~~G~g~~S~~~~~~t~~ 737 (977)
+|.+|.|++|.++.++|.+
T Consensus 81 ~n~~g~s~~S~~~~~~T~e 99 (100)
T d1x5ja1 81 TKGRRSSTWSMTAHGTTFE 99 (100)
T ss_dssp ECSSCBCCCCCCCCEECCC
T ss_pred EeCCcCcCCCCeEEEEecc
Confidence 9999999999999998864
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.39 E-value=4.1e-13 Score=113.19 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=70.9
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
+.+++....+.+|++++|.|.+..+.|.+.+.|+|||+.+... ..++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~ 75 (88)
T d2fcba2 3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-------RSDPNFSIPQANHSHSGDYHCTGNIGYTLY 75 (88)
T ss_dssp EEEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------SSCCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred EEEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-------ccccccccCccCHHHCCeEEEEEEeCCCCE
Confidence 3456667789999999999998556788899999999988432 235689999999999999999999998887
Q ss_pred eeEeEEEEEEcC
Q psy574 88 ESTDAVLRVLVK 99 (977)
Q Consensus 88 ~s~~~~l~V~~~ 99 (977)
.|..+.|+|+.|
T Consensus 76 ~S~~v~l~V~~P 87 (88)
T d2fcba2 76 SSKPVTITVQAP 87 (88)
T ss_dssp ECCCEEEEECCC
T ss_pred EeeeEEEEEeCC
Confidence 788889998764
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.7e-13 Score=115.02 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCe-eeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNG-VIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.++|.|+|++| ...+| .+.+|.++++..+.............++++|.+|+|++.|.|+|+|+|.+
T Consensus 3 ~P~~~~v~~~~~~si~l~W~~p--~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~ 80 (96)
T d1x5xa1 3 MPASPVLTKAGITWLSLQWSKP--SGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE 80 (96)
T ss_dssp CCCCCEEEEECSSEEEEECCCC--SSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred cCCCCEEEEecCCEEEEEEEee--cccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence 6778888888999999999998 44444 68888888877554444445556678899999999999999999999999
Q ss_pred CcCCCCCceEEeecC
Q psy574 723 GTGPYSRPALLSLTS 737 (977)
Q Consensus 723 G~g~~S~~~~~~t~~ 737 (977)
|.|++|+.+.++|.+
T Consensus 81 G~s~~S~~~~~~T~p 95 (96)
T d1x5xa1 81 GKSNPSEVVEFTTCP 95 (96)
T ss_dssp CEEEECCCEEEECCC
T ss_pred cEeCCCCCEEEEeCc
Confidence 999999999998864
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.39 E-value=1.5e-13 Score=117.18 Aligned_cols=89 Identities=25% Similarity=0.555 Sum_probs=74.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+|...|.++.+.+|+++.|.|.+ .|.|.|.|.|+|||..|......++.... .++|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 rii~~P~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 79 (91)
T d1tnna_ 1 RILTKPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG 79 (91)
T ss_dssp CCSBCCCCEECSSSSCCCEEEEC-CCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred CEEeCCcCEEEeCCCcEEEEEEE-EEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCC
Confidence 36678999999999999999999 89999999999999998655544444443 45799999999999999999999998
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
... ..+.|.|+
T Consensus 80 ~~~-~~~~l~V~ 90 (91)
T d1tnna_ 80 KQE-AEFTLTIQ 90 (91)
T ss_dssp BCC-EEEEEECC
T ss_pred EEE-EEEEEEEE
Confidence 754 55777765
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.39 E-value=8.2e-13 Score=114.88 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-C-cceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-N-SALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
+++|+ +|.++.+.. ..+++.|+|++| .+.++.|++|.|+|+..+ . ............+++.+.+|+|++.|.|+
T Consensus 3 ~dvP~-~P~~~~v~~-~~~sv~lsW~pp--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~fr 78 (100)
T d1cfba1 3 QDVPN-APKLTGITC-QADKAEIHWEQQ--GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFR 78 (100)
T ss_dssp CCCCC-CCEEEEEEE-CSSEEEEEEECC--CCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEE
T ss_pred ccCCC-cCcCcEEEE-cCCEEEEEEcCC--cccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEE
Confidence 46776 889999865 567899999988 677899999999998765 2 22233333446678899999999999999
Q ss_pred EEEEcCCCcCCCCCceE
Q psy574 716 LAATNRAGTGPYSRPAL 732 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~ 732 (977)
|+|.|.+|.|++|++..
T Consensus 79 V~A~n~~G~g~~S~~s~ 95 (100)
T d1cfba1 79 VIAFNKIGASPPSAHSD 95 (100)
T ss_dssp EEEEETTEECCCCCCCC
T ss_pred EEEEeCCcCCCCcCCCc
Confidence 99999999999998653
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.38 E-value=5.9e-13 Score=114.87 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=72.6
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe---cCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+.++.+.+|++++|.|.+ .|.|.+.|.|+|||+.+......++... ..++|.|.+++.+|+|.|+|+|.|..|..
T Consensus 9 ~~~~~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 87 (97)
T d1biha3 9 VSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 87 (97)
T ss_dssp ECCSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred CCCCEEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcE
Confidence 3678999999999999999 8999999999999999965555555443 23579999999999999999999999987
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
.+..+.|+|
T Consensus 88 ~s~s~~L~V 96 (97)
T d1biha3 88 QKHSLKLTV 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 777778877
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-14 Score=127.17 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=80.5
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
|+.|+.+|..+++...+.++|.|+|++| ...||.|.+|+|+|+..+. ............+.+.+.+|++++ |.|
T Consensus 1 ea~~~d~P~~v~~~~~~~~sv~l~W~pP--~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~ 77 (102)
T d2dtge1 1 EAKADDIVGPVTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSV 77 (102)
T ss_dssp CCCCCCCCCCCCCCSSSSSCCCCCCCCC--CSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECC
T ss_pred CCCCCCCCCCCEEEEECCCEEEEEEEeC--CCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEE
Confidence 3456668888998888999999999998 7789999999999987652 122223344567789999999985 999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
+|+|+|.+|.|++|+++.|.|++.
T Consensus 78 rV~A~n~~G~g~~S~~v~f~~~e~ 101 (102)
T d2dtge1 78 RIRATSLAGNGSWTEPTYFYVTDY 101 (102)
T ss_dssp CCCEEETTBCCCCCCCCEECCCCC
T ss_pred EEEEEcCCccCCCCCCEEEEccCC
Confidence 999999999999999999998764
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.6e-12 Score=114.56 Aligned_cols=96 Identities=26% Similarity=0.472 Sum_probs=82.0
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece--ecCcCeEEEEccC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT--NVPSPILTVTNLT 473 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~i~~L~ 473 (977)
.+|++|.++.+..++.+++.|+|.++.+ ++.++.+|.|+|+...... .|..... .....++++.+|.
T Consensus 9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~-~g~~I~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~L~ 77 (108)
T d1x4za1 9 SPPEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYKKLKKVG----------DWILATSAIPPSRLSVEITGLE 77 (108)
T ss_dssp CCCCCCCCCEEEECCSSEEEEECCCCCC-TTSCCCEEEEEEEESSSCC----------CCEEEEEEECTTCCEEEEESCC
T ss_pred CCCccCCCCEEEEccCCEEEEEEECCCC-CCCccEEEEEEEEecCCCC----------ceEEEEEeecCCccEEEECCCC
Confidence 5799999999999999999999987655 7888999999998766543 6665543 3466789999999
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
|++.|.|+|+|.|..|.|++|..++.+++
T Consensus 78 p~t~Y~frV~A~N~~G~s~~S~pS~p~~~ 106 (108)
T d1x4za1 78 KGISYKFRVRALNMLGESEPSAPSRPYVV 106 (108)
T ss_dssp TTCEEEEEEEEEETTEECCCCCCCCCEEC
T ss_pred CCCEEEEEEEEECCCcCCCCCCCCCCEEe
Confidence 99999999999999999999998888776
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.4e-13 Score=111.84 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=73.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
+.+++....|.+|+.++|.|.+..+.|...+.|+|||+.+.... .++.|.|.+++.+|+|.|+|+|.|..+..
T Consensus 3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-------ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 35567778899999999999985556777999999999984322 25679999999999999999999998887
Q ss_pred eeEeEEEEEEcCCe
Q psy574 88 ESTDAVLRVLVKPY 101 (977)
Q Consensus 88 ~s~~~~l~V~~~P~ 101 (977)
.|..+.|+|..+|+
T Consensus 76 ~S~~v~i~V~~~Pr 89 (89)
T d1f2qa2 76 ESEPLNITVIKAPR 89 (89)
T ss_dssp ECCCEEEEEECSCC
T ss_pred EeeeEEEEEEeCCC
Confidence 88999999998874
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=8.4e-13 Score=118.54 Aligned_cols=90 Identities=24% Similarity=0.185 Sum_probs=77.6
Q ss_pred EEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.++++..++.++|.|+|++| .++.|.+|.|+|+..+....+....... ....+++|.+|+|++.|.|+|+|+|..|.
T Consensus 25 ~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 103 (117)
T d1wfoa1 25 MGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLA-PSARQYTATGLKPESVYLFRITAQTRKGW 103 (117)
T ss_dssp CCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEEC-TTCCEEEEESCCSSSEEEEEEEEECSSCE
T ss_pred CCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecC-CceEEEEECCCCCCCEEEEEEEEECCCcC
Confidence 56889999999999999998 6778999999999888655555544433 67789999999999999999999999999
Q ss_pred CCCCCceEEeccC
Q psy574 626 GKPSNLRAVRTLE 638 (977)
Q Consensus 626 g~~s~~~~~~T~~ 638 (977)
|++|+.+.++|.+
T Consensus 104 g~~S~~~~~tT~e 116 (117)
T d1wfoa1 104 GEAAEALVVTTEK 116 (117)
T ss_dssp EEEEEEEEECCSS
T ss_pred CCCcCCEEEECCC
Confidence 9999988888865
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.4e-13 Score=118.18 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=79.9
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---C---cceEEEEecCCcCeEEecCCCCC
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---N---SALINMTVSASTPTLLLTNLSAG 709 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~---~~~~~~~~~~~~~~~~l~~L~p~ 709 (977)
+++++|. +|.++++...+.++|.|+|++| .+.++.|.+|.|+|+... . ............+++.|.+|+|+
T Consensus 6 ~p~~~P~-~P~~~~~~~~~~~sv~l~W~pp--~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~ 82 (111)
T d1wisa1 6 VPPELPG-PPTNLGISNIGPRSVTLQFRPG--YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPF 82 (111)
T ss_dssp CCCCCCC-CCEEEEEESCCSSCEEEEEECC--CCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTT
T ss_pred CCCCCCc-CCCCCEEEEcCCCEEEEEEeCC--CCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCC
Confidence 4566775 8999999988999999999988 778899999999998753 1 12234445677889999999999
Q ss_pred ceEEEEEEEEcCCCcCCCCCce-EEee
Q psy574 710 IRYSVSLAATNRAGTGPYSRPA-LLSL 735 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~~~-~~~t 735 (977)
+.|.|+|+|+|.+|.|++|++. .|+|
T Consensus 83 t~Y~frV~A~N~~G~s~~S~~s~~~~T 109 (111)
T d1wisa1 83 TCYSFRMRQVNIVGTSPPSQPSRKIQT 109 (111)
T ss_dssp SEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred CEEEEEEEEEcCCcCCCCcCCCCCEEc
Confidence 9999999999999999999874 4555
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.3e-13 Score=113.41 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=67.7
Q ss_pred ecCcEEEEEeeCCCCCCCCe-eeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 653 LNATSVLLKWKPPPVGTHNG-VIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 653 ~~~~sv~v~W~~p~~~~~ng-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
.+.++|.|+|++| ...+| .|++|+|+|+..+...+.. ...+..++++|.+|+|++.|.|+|+|.|.+|.|++|+.+
T Consensus 14 ~~~~sv~l~W~~P--~~~gg~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~ 90 (97)
T d2crza1 14 PKAKEIQLRWGPP--LVDGGSPISCYSVEMSPIEKDEPRE-VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90 (97)
T ss_dssp CCSSEEEEECCCC--SCCTTSCCCEEEEEEECTTSCCCEE-EEEESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCE
T ss_pred eeCCEEEEEEeCC--CcCCCCceeEEEEEEEcCcCCceeE-eecCCceEEEEcCCCCCEEEEEEEEEecCCeEcCCcCCC
Confidence 4568999999988 44444 7999999998865433333 345678899999999999999999999999999999999
Q ss_pred EEeecC
Q psy574 732 LLSLTS 737 (977)
Q Consensus 732 ~~~t~~ 737 (977)
.++|.+
T Consensus 91 ~~~T~p 96 (97)
T d2crza1 91 DITTAP 96 (97)
T ss_dssp EEECCC
T ss_pred eEEeCc
Confidence 988754
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.2e-12 Score=112.62 Aligned_cols=93 Identities=23% Similarity=0.424 Sum_probs=75.3
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
|.+|.+ .+.+..+.+|++++|.|.+ .+ |.+.|.|+|||+.|.... +..+. .++.|.|.+++.+|+|.|+|+|.
T Consensus 3 v~~P~i--~~~~~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 76 (96)
T d1l6za2 3 VTQPFL--QVTNTTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLTE--RMTLSQNNSILRIDPIKREDAGEYQCEIS 76 (96)
T ss_dssp CCCCCE--ECSCSEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCCT--TEEEETTTTEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCeE--EcCceEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeeccccc--ceeccCCceEEEEeccchhhceEEEEEEE
Confidence 445544 4567889999999999987 44 568999999999995443 44444 45689999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCe
Q psy574 82 NVAGTRESTDAVLRVLVKPY 101 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~ 101 (977)
|..|...+..+.|+|..+|.
T Consensus 77 N~~g~~~S~~~~L~V~~~Ps 96 (96)
T d1l6za2 77 NPVSVRRSNSIKLDIIFDPS 96 (96)
T ss_dssp SSSCCEECCCCEEEECCSCC
T ss_pred eCCCCeEEEeEEEEEEcCCC
Confidence 99998778889999988773
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.6e-12 Score=108.45 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=69.1
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI- 177 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~- 177 (977)
|.|...|.+..+.+|+++.|.|.+.|.|.| +|+|+||+..+.... .+.+.|.....+|+|.|+|.|.|..|..
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~ 76 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLAS 76 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcEE
Confidence 788999999999999999999999999987 899999999887542 2445666677789999999999999964
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
++.+.|.|+
T Consensus 77 S~~~~v~Vk 85 (85)
T d1rhfa2 77 SRTATVHLQ 85 (85)
T ss_dssp CCCEEEEEC
T ss_pred EEEEEEEEC
Confidence 456777763
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=2.2e-12 Score=111.32 Aligned_cols=89 Identities=22% Similarity=0.530 Sum_probs=71.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEe-CCEEeecCCCceEEEec----CcEEEEcCCCCCCCeEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKK-NGHPIDFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k-~g~~l~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~a 80 (977)
++.+.|.++.+.+|+++.|.|.+ .|.|. +.|.|+| ||..+.. ...|+.+.. .++|.|.+++.+|+|.|+|.|
T Consensus 2 ~V~i~P~~~~v~~G~~~~l~C~v-~g~p~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 79 (97)
T d1epfa1 2 QVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 79 (97)
T ss_dssp CEEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEEECCCEEEccCCcEEEEEEE-EeccCCCEEEEEEeeeeeeee-ccccEEEEeecCcceEEEcccCchhhceEEEEEE
Confidence 46778999999999999999999 77774 7999999 5666633 334544432 246999999999999999999
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
.|..|...+..+.|+|+
T Consensus 80 ~N~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 80 TAEDGTQSEATVNVKIF 96 (97)
T ss_dssp EETTTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEEEE
Confidence 99999866677888875
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=4.4e-13 Score=121.56 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=79.7
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-------ceE---------EEEecCCc
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-------ALI---------NMTVSAST 698 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-------~~~---------~~~~~~~~ 698 (977)
+|.+++|. +|.++++.. +.++|.|+|++| .+.+|.|++|.|+|+..+.. ... ...+.+..
T Consensus 2 ~~~~~~P~-aP~~v~v~~-~~~si~l~W~~P--~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T d1wfta_ 2 SSGSSGPG-APSTVRISK-NVDGIHLSWEPP--TSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQ 77 (123)
T ss_dssp CCSSSCCC-CCEEEEEEE-CSSEEEEEEECC--SSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHH
T ss_pred CCCCCCCc-CCcccEEEe-CCCEEEEEecCc--hhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCc
Confidence 35677886 889999875 678999999998 77799999999999875411 111 12233445
Q ss_pred CeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 699 ~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+.+.|.+|+|++.|.|+|+|+|.+|.|++|+...++|....
T Consensus 78 ~~~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~~~ 118 (123)
T d1wfta_ 78 LANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKS 118 (123)
T ss_dssp HTTCCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCSCCS
T ss_pred cEEEEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEecCCC
Confidence 56678899999999999999999999999999999886543
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.9e-12 Score=113.29 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=75.8
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC------CcceEEEEecCCcCeEEecCCCCCceE
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN------NSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~------~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
++|+ +|.++++...+.+++.|+|++| .+.+|.+.+|.|+|+..+ .............++++|.+|+|++.|
T Consensus 1 d~P~-~P~~~~~~~~~~~sv~v~W~~P--~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 77 (103)
T d1qg3a2 1 EVPS-EPGRLAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPY 77 (103)
T ss_dssp CCCC-CCCCCEEEEEETTEEEEECCCC--SCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCE
T ss_pred CcCc-cCCCcEEEEecCCEEEEEEEEC--ccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEE
Confidence 3575 8899999999999999999998 788999999999998754 122333444667789999999999999
Q ss_pred EEEEEEEcCCCcCCCCCce
Q psy574 713 SVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~~~ 731 (977)
.|+|+|+|.+|.|++|+.+
T Consensus 78 ~~~V~A~n~~G~g~~s~~~ 96 (103)
T d1qg3a2 78 RYTVKARNGAGWGPEREAI 96 (103)
T ss_dssp EEEEEEEETTEECCCEEEE
T ss_pred EEEEEEEcCCccCCCcccc
Confidence 9999999999999988644
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=2e-12 Score=110.17 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
++.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .++....+++|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~ 80 (92)
T d1epfa2 1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 80 (92)
T ss_dssp CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence 36788899999999999999999999999999999999988753 345555677899999999999999999999877
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
.......|.|
T Consensus 81 ~~~~~~~i~V 90 (92)
T d1epfa2 81 GEINFKDIQV 90 (92)
T ss_dssp TEEEEEEEEE
T ss_pred CEEEEEEEEE
Confidence 6555555555
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.5e-12 Score=111.85 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=73.6
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCe-eeeEEEEEEEecCCcceEE--EE--ecCCcCeEEecCCCCCceEE
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG-VIRTYQIIVGGGNNSALIN--MT--VSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng-~i~~Y~v~~~~~~~~~~~~--~~--~~~~~~~~~l~~L~p~t~Y~ 713 (977)
++|+ +|..+.+. ..+++|.|+|++| ...+| .|++|.|+|+..+...+.. .. .....+.++|.+|+|++.|.
T Consensus 1 DvP~-~P~~~~~~-~~~~sv~l~W~~P--~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 76 (101)
T d2haza1 1 DTPS-SPSIDQVE-PYSSTAQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 76 (101)
T ss_dssp CCCC-CCEEEEEE-ECSSCEEEEEECC--SCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEE
T ss_pred CcCc-CCccCEEE-eeCCEEEEEEeCC--CcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEE
Confidence 4675 67666654 5678899999998 55555 6999999999865332222 11 12346789999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
|+|+|+|.+|.|++|.++.++|.+
T Consensus 77 frV~A~N~~G~g~~S~~~~~~T~P 100 (101)
T d2haza1 77 VRLAALNGKGLGEISAASEFKTQP 100 (101)
T ss_dssp EEEEEEETTEECCCCCCEEEECCC
T ss_pred EEEEEEeCCcCcCCCCceeEEeCC
Confidence 999999999999999999998764
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=2.7e-12 Score=108.82 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=72.6
Q ss_pred EeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
...|.+..+.+|+++.|.|.+. +.|.+.+.|+|++..+...+... .++.|.|.+++.+|+|.|+|.|.|..|..+..+
T Consensus 6 ~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 84 (89)
T d1gl4b_ 6 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTA 84 (89)
T ss_dssp ECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE-ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe-eceEEEEecCCcccCEEEEEEEEECCCEEEEEE
Confidence 4457788999999999999995 67889999999998887666443 678999999999999999999999999999999
Q ss_pred EEEEe
Q psy574 182 TLTVQ 186 (977)
Q Consensus 182 ~L~V~ 186 (977)
.|.|.
T Consensus 85 ~l~V~ 89 (89)
T d1gl4b_ 85 TLHVQ 89 (89)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98874
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.8e-12 Score=111.24 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=74.4
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
+|.. .+...+.+++.|+|++| .+.+|.|.+|.|+|+..+........+....++++|.+|.|++.|.|+|+|+|.+|
T Consensus 3 ~P~~-~~~~~~~~sv~l~W~pP--~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G 79 (94)
T d2dn7a1 3 RPTM-MISTTAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAG 79 (94)
T ss_dssp CCEE-EEEECSTTEEEEEEECC--SSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTE
T ss_pred CCcE-eEEEEeCCEEEEEEeCC--CCCCCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcCCc
Confidence 6654 45667889999999998 67789999999999987755566677788899999999999999999999999999
Q ss_pred cCCCCCceEEee
Q psy574 724 TGPYSRPALLSL 735 (977)
Q Consensus 724 ~g~~S~~~~~~t 735 (977)
.|++|+.. +.|
T Consensus 80 ~g~~s~~~-~~T 90 (94)
T d2dn7a1 80 LGEEFEKE-IRT 90 (94)
T ss_dssp EEEEEEEE-EEC
T ss_pred CCCCccEE-Eee
Confidence 99988744 444
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-12 Score=115.36 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.||+++.+.. +.++|.|+|++| ...++.|.+|.|+|+..+. .......+..+.+.++|.+|++++.|.|+|+|+|.
T Consensus 9 sPP~~~~~~~-t~~si~l~W~pp--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~ 85 (108)
T d1v5ja_ 9 SPPRGLVAVR-TPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAG 85 (108)
T ss_dssp CCCEEEEEEE-CSSSEEEEEECC--SCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEET
T ss_pred CcCCCeEEEE-cCCEEEEEEEec--ccCCCceeEEEEEeeeeeeeeeeccccccceeeeEEEEeccCCcEEEEEEEEEeC
Confidence 4899998755 678899999998 6778899999999998653 33444556778899999999999999999999999
Q ss_pred CCcCCCCCceEEeecCC
Q psy574 722 AGTGPYSRPALLSLTSG 738 (977)
Q Consensus 722 ~G~g~~S~~~~~~t~~~ 738 (977)
.|.|++|+.+.++|...
T Consensus 86 ~g~s~~S~~~~~~T~~~ 102 (108)
T d1v5ja_ 86 SFVSDPSNTANVSTSGL 102 (108)
T ss_dssp TEEEEECSCCCCCCSSC
T ss_pred CCEeCCcCceEEECCCC
Confidence 99999999998877553
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.33 E-value=7.2e-13 Score=112.78 Aligned_cols=86 Identities=23% Similarity=0.432 Sum_probs=70.6
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.|.|... |.++.+.+|++++|.|.+ .|.|.|.|.|+|++..+.. .....++.|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQNVDFEDEGTYECEAENI 77 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSC-----CCSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEE-EEccCCEEEEEecccccce-----EeeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence 4667664 788999999999999999 8999999999997755421 12234678999999999999999999999
Q ss_pred CceeeeEeEEEEEE
Q psy574 84 AGTRESTDAVLRVL 97 (977)
Q Consensus 84 ~g~~~s~~~~l~V~ 97 (977)
.|.. +..+.|.|+
T Consensus 78 ~G~~-~~~~~l~V~ 90 (91)
T d1cs6a3 78 KGRD-TYQGRIIIH 90 (91)
T ss_dssp TEEE-EEEEEEEEE
T ss_pred CCEE-EEEEEEEEE
Confidence 9975 456788775
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.5e-12 Score=108.67 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=68.2
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
+..+.+|++++|.|.+.|.|.|.|.|++++..+. ..+..|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~ 81 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 81 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeecccce------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEe
Confidence 4568999999999999999999999999876543 2567899999999999999999999999999999999987
Q ss_pred CCe
Q psy574 188 API 190 (977)
Q Consensus 188 ~p~ 190 (977)
.|+
T Consensus 82 ~~k 84 (84)
T d2nxyb2 82 FQK 84 (84)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.32 E-value=3.5e-13 Score=114.85 Aligned_cols=85 Identities=34% Similarity=0.549 Sum_probs=74.2
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
|+..|.++.+.+|+++.|.|.+.|.|.|.+.|++++..+.. .++.+. ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T d1tnna_ 2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ 81 (91)
T ss_dssp CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence 56678899999999999999999999999999999988864 333333 45689999999999999999999999998
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|.|.
T Consensus 82 ~~~~~l~V~ 90 (91)
T d1tnna_ 82 EAEFTLTIQ 90 (91)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEEEE
Confidence 888998875
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=5.8e-12 Score=112.05 Aligned_cols=103 Identities=25% Similarity=0.337 Sum_probs=80.1
Q ss_pred CCCceEEeccC------CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeE
Q psy574 628 PSNLRAVRTLE------CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL 701 (977)
Q Consensus 628 ~s~~~~~~T~~------~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~ 701 (977)
+|+++.+.|.+ .+| .+|.++++.. ..++|.|+|++| ...+|.|.+|.|+|+..+.. .....+..+.+.+
T Consensus 2 ~S~~~~~~T~~~~~~~~~vP-~~P~~~~~~~-~~~si~v~W~~p--~~~~g~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~ 76 (113)
T d1x5ia1 2 ATDWLSAETFESDLDETRVP-EVPSSLHVRP-LVTSIVVSWTPP--ENQNIVVRGYAIGYGIGSPH-AQTIKVDYKQRYY 76 (113)
T ss_dssp CCCCCCSCCCCTTSBCSSCC-CSCSEEEEEE-ETTEEEEEEECC--SCTTBCCCEEEEEECSSCGG-GEEEECCTTCCEE
T ss_pred CCCCEEeEccCCCCCCCCCC-CCCEeeeeee-CCCEEEEEEEcc--ccCCccEEEEEEEeeecccc-ceeeeeeCCccEE
Confidence 34445555543 255 4889999876 457999999988 77899999999999875433 3456678889999
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
+|.+|.+++.|.|+|+|+|.+|.|+++. ..++|.
T Consensus 77 ~i~~L~p~t~Y~~~V~A~n~~G~g~~~~-~~~~T~ 110 (113)
T d1x5ia1 77 TIENLDPSSHYVITLKAFNNVGEGIPLY-ESAVTR 110 (113)
T ss_dssp EECSCCSSCEECCEEEEECSSCBCCCCC-CCEECC
T ss_pred EEeccccCcEEEEEEEEECCCcCCCCee-eEEEeC
Confidence 9999999999999999999999998655 344443
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=3.3e-12 Score=110.88 Aligned_cols=89 Identities=26% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCeEEeCCCc--eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC----c-eEEe-ccceEEEccCccCCCeEEEEEE
Q psy574 99 KPYIIRGPKD--TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----R-MSVL-PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 99 ~P~~~~~p~~--~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~----~-~~~~-~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
||.+...+.. .++.+|+++.|.|.+.|.|.|.|.|+|++..+... . .... ..+.|.|.+++.+|+|.|+|.|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence 6677665554 35678999999999999999999999999988542 1 1121 4468999999999999999999
Q ss_pred EeCCeeEEEEEEEEEee
Q psy574 171 ENAVGKISASATLTVQM 187 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~ 187 (977)
.|..|..+..+.|.|..
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 83 ENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999999999999863
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.4e-12 Score=111.75 Aligned_cols=92 Identities=28% Similarity=0.611 Sum_probs=72.1
Q ss_pred cccceecccc--eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--ceEEEe-cCcEEEEcCCCCCCCeEEEEE
Q psy574 5 REEFRVQPKS--QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRLV-DGTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 5 ~~~~~~~p~~--~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--~r~~~~-~~g~L~I~~v~~~D~G~Y~C~ 79 (977)
.|.|...+.. +++..|++++|.|.+ .|.|.|.|.|+|||+.+..... .+.... ..+.|.|.+++.+|+|.|+|.
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI 81 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEE-EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence 4667665554 466789999999999 8999999999999999854322 223333 356899999999999999999
Q ss_pred EEecCceeeeEeEEEEEEc
Q psy574 80 VKNVAGTRESTDAVLRVLV 98 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~ 98 (977)
|.|..|.. +..+.|.|..
T Consensus 82 a~N~~G~~-~~~~~l~V~~ 99 (100)
T d1qz1a3 82 AENKAGEQ-DASIHLKVFA 99 (100)
T ss_dssp EEETTEEE-EEEEEEEEEC
T ss_pred EEECCCEE-EEEEEEEEEE
Confidence 99999875 4567888864
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.2e-12 Score=107.96 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred cccceeccc-ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~-~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.+...|. .+.+.+|+++.|.|.+..+.|.+.|.|+|++..+. .+......+.|.|.+++.+|+|.|+|+|.|.
T Consensus 2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~ 77 (90)
T d1gsma1 2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG----AVQSDTGRSVLTVRNASLSAAGTRVCVGSCG 77 (90)
T ss_dssp CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC----CEEEESSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee----eeeccCceeeEEcCccChhhCCcEEEEEEeC
Confidence 444444444 47789999999999885689999999999887662 2233334567999999999999999999998
Q ss_pred CceeeeEeEEEEEE
Q psy574 84 AGTRESTDAVLRVL 97 (977)
Q Consensus 84 ~g~~~s~~~~l~V~ 97 (977)
.|. ....+.|.|+
T Consensus 78 ~g~-~~~s~~l~Vy 90 (90)
T d1gsma1 78 GRT-FQHTVQLLVY 90 (90)
T ss_dssp TEE-EEEEEEEEEE
T ss_pred CCc-EEEEEEEEEC
Confidence 886 4566777774
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.6e-12 Score=106.38 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=64.5
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
++.+.+|++++|.|.+ .|.|.|.|.|+|++..+. ..+..|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 8 ~~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~~~---------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~-~~~~ 76 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNI---------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVE-FKID 76 (84)
T ss_dssp SSCEETTCCEEEEEEC-CTTCCCEEEEECTTCCEE---------EESSEEEESSCCGGGCEEEEEEEEETTEEEE-EEEE
T ss_pred CeEEECCCeEEEEEEe-EcCCchheEEEeecccce---------eeeeeeeeeecccccccEEEEEEEeCCCEEE-EEEE
Confidence 5679999999999999 899999999999776552 2356799999999999999999999988754 5678
Q ss_pred EEEEcCC
Q psy574 94 LRVLVKP 100 (977)
Q Consensus 94 l~V~~~P 100 (977)
|.|...|
T Consensus 77 v~V~~~~ 83 (84)
T d2nxyb2 77 IVVLAFQ 83 (84)
T ss_dssp ECEECCC
T ss_pred EEEEecC
Confidence 8887654
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.31 E-value=1.1e-12 Score=114.99 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=68.5
Q ss_pred ccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceE-EEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL-RLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 6 ~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~-~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++|..+|.+ +.+.+|+++.|.|.+..+.|.+.|.|+|||..+....+.++ ....+++|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 83 (105)
T d1cs6a2 4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 83 (105)
T ss_dssp CCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEE
T ss_pred CcccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEEC
Confidence 457776654 88999999999999867899999999999988755444444 4446789999999999999999999998
Q ss_pred Cceee
Q psy574 84 AGTRE 88 (977)
Q Consensus 84 ~g~~~ 88 (977)
.|...
T Consensus 84 ~g~~~ 88 (105)
T d1cs6a2 84 IDFIT 88 (105)
T ss_dssp ETTEE
T ss_pred CCCEE
Confidence 77643
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6e-12 Score=106.25 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCeEEeCCC-ceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 99 KPYIIRGPK-DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 99 ~P~~~~~p~-~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+|.++..|. ...+.+|+++.|.|.+ .|.|.+.|.|++++..+.. .......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~ 80 (90)
T d1gsma1 2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT 80 (90)
T ss_dssp CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence 455555554 4678899999999998 4889999999998887743 222335578999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
.+.+++|.|+
T Consensus 81 ~~~s~~l~Vy 90 (90)
T d1gsma1 81 FQHTVQLLVY 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999999885
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.31 E-value=3.8e-12 Score=109.63 Aligned_cols=79 Identities=29% Similarity=0.524 Sum_probs=67.7
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC----ceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~----~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.+.+.+|+++.|.|.+.|.|.|.|.|+||+..+... .... ....+|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 346789999999999999999999999999988542 1222 24578999999999999999999999999999999
Q ss_pred EEEe
Q psy574 183 LTVQ 186 (977)
Q Consensus 183 L~V~ 186 (977)
|+|.
T Consensus 94 l~Vl 97 (97)
T d3dara1 94 LDVV 97 (97)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9873
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.2e-12 Score=112.73 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=75.7
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
+.++++..+++++|.|+|++| .++.|.+|.|+|+..+. ..|.... ....++.|.+|.|++.|.|+|+|+|..|
T Consensus 14 P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~-~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~G 88 (103)
T d1x5ga1 14 APNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGT-DKEQDVD----VSSHSYTINGLKKYTEYSFRVVAYNKHG 88 (103)
T ss_dssp CSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTC-CCCCCEE----ECSSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred CCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCC-ceeEEEe----ccccEEecCCCCCCCEEEEEEEEEcCCc
Confidence 457899999999999999998 66789999999998774 4444433 3457899999999999999999999999
Q ss_pred eCCCCCceEEeccCC
Q psy574 625 DGKPSNLRAVRTLEC 639 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~ 639 (977)
.|++|..+.++|.++
T Consensus 89 ~g~~S~~v~v~T~eD 103 (103)
T d1x5ga1 89 PGVSTPDVAVRTLSD 103 (103)
T ss_dssp CCCBCCCCCEECCCS
T ss_pred CcCCCCCEEEEcCCC
Confidence 999999999999874
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.3e-12 Score=107.60 Aligned_cols=86 Identities=16% Similarity=0.280 Sum_probs=68.6
Q ss_pred ceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 8 FRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 8 ~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
+.+.|.+ +.+.+|++++|.|.+ .|.|.|.+.|++++..+. ..........+.|.|.+++.+|+|.|+|+|.|..|.
T Consensus 3 i~i~P~~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~ 79 (90)
T d1vcaa2 3 IETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL--NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK 79 (90)
T ss_dssp EEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC--SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred EEEECCCcEEEECCCEEEEEEec-cCCCCceEEEEecCccce--eeeeeeecCCcEEEEecccccccceEEEEEEeCCCE
Confidence 4566765 556799999999999 899999999999887662 222333344568999999999999999999999987
Q ss_pred eeeEeEEEEEE
Q psy574 87 RESTDAVLRVL 97 (977)
Q Consensus 87 ~~s~~~~l~V~ 97 (977)
.+..+.|.|+
T Consensus 80 -~~~~~~v~V~ 89 (90)
T d1vcaa2 80 -LEKGIQVEIY 89 (90)
T ss_dssp -EEEEEEEEEE
T ss_pred -EEEEEEEEEE
Confidence 4566788876
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=7.7e-12 Score=109.42 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=75.1
Q ss_pred CCCceeEEEEec--CcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 643 GVPQLTDPVLLN--ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 643 ~~P~~v~~~~~~--~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
+||.++++..+. .++|.|+|++|...+.++.+..|+|+|+..+...+....+....+.++|.+|+|++.|.|+|+|.|
T Consensus 3 ~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~n 82 (104)
T d1n26a3 3 DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQE 82 (104)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEE
T ss_pred cCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEEEEe
Confidence 488999988763 467999999996556788999999999987766666677778889999999999999999999999
Q ss_pred CCCcCCCCC
Q psy574 721 RAGTGPYSR 729 (977)
Q Consensus 721 ~~G~g~~S~ 729 (977)
..|.|.+|+
T Consensus 83 ~~g~g~wSe 91 (104)
T d1n26a3 83 EFGQGEWSE 91 (104)
T ss_dssp TTTBSCCCC
T ss_pred CCCccCCcC
Confidence 999988776
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.4e-12 Score=105.78 Aligned_cols=79 Identities=13% Similarity=0.257 Sum_probs=68.0
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
...+.+|+++.|.|.+.|.|.|.+.|++++..+..+.... ...+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|+
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~ 89 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence 3456789999999999999999999999887765543332 255789999999999999999999999999999999986
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=3.5e-12 Score=108.09 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=68.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
..|.++.+.+|+++.|.|.+..+.|.+.|.|+|+|..+... +.. ..++.|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus 7 ~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~---~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~ 81 (89)
T d1gl4b_ 7 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS---RAM-DFNGILTIRNVQPSDAGTYVCTGSNMFAMD-Q 81 (89)
T ss_dssp CSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT---TEE-EETTEEEECSCCGGGCEEEEEEEECSSCEE-E
T ss_pred cCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc---ccE-eeceEEEEecCCcccCEEEEEEEEECCCEE-E
Confidence 35778899999999999999557889999999999887432 222 347899999999999999999999999964 4
Q ss_pred EeEEEEEE
Q psy574 90 TDAVLRVL 97 (977)
Q Consensus 90 ~~~~l~V~ 97 (977)
..+.|.|+
T Consensus 82 ~~~~l~V~ 89 (89)
T d1gl4b_ 82 GTATLHVQ 89 (89)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 56777763
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.7e-12 Score=110.31 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=65.9
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-+|.|.+.+..+.+.+|++++|.|.+ .+.| .++|.|+|||..+... .+.....+++|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~~P~~~~~~~~v~~~~G~~v~L~C~~-~g~~~~~~i~W~k~~~~l~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 81 (93)
T d1n26a1 5 RCPAQEVARGVLTSLPGDSVTLTCPG-VEPEDNATVHWVLRKPAAGSH--PSRWAGMGRRLLLRSVQLHDSGNYSCYRAG 81 (93)
T ss_dssp CCCCCCCCTTEEEECTTCCEEEECTT-SCTTCCSEEEEEEECSSSSCC--CEEEEEESSEEEECSCCGGGCEEEEEESSS
T ss_pred CCCcEEeCCCCEEEeCCCcEEEEEEe-ecCCCCceEEEEEccccccce--eeEEecCCCEEEECCCChhcCEEEEEEECC
Confidence 36889999999999999999999998 5544 5699999999988433 455566688999999999999999999987
Q ss_pred cC
Q psy574 83 VA 84 (977)
Q Consensus 83 ~~ 84 (977)
..
T Consensus 82 ~~ 83 (93)
T d1n26a1 82 RP 83 (93)
T ss_dssp SC
T ss_pred cc
Confidence 54
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.8e-12 Score=112.41 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
|+.||.++.+...++++|.|+|++|. ...+..|.+|.++++..+.. ...........+.+++.+|+|++.|.|+|+|+
T Consensus 2 Pp~pP~~p~~~~~t~~sv~lsW~~P~-~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~ 80 (104)
T d1bpva_ 2 PIDPPGKPVPLNITRHTVTLKWAKPE-YTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK 80 (104)
T ss_dssp CCCCCCCCEEEEEETTEEEEECCCCS-CCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred CCCCCCCCEEEEecCCEEEEEEEecc-ccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEE
Confidence 55688888888889999999999883 34445799999999886633 33333345677899999999999999999999
Q ss_pred cCCCc-CCCCCceEE
Q psy574 720 NRAGT-GPYSRPALL 733 (977)
Q Consensus 720 ~~~G~-g~~S~~~~~ 733 (977)
|.+|. |++|.+...
T Consensus 81 n~~G~~s~~S~~s~~ 95 (104)
T d1bpva_ 81 NAAGAISPPSEPSDA 95 (104)
T ss_dssp CTTSCEEEEEEEEEE
T ss_pred ECCCCCCCCcCCCCC
Confidence 99996 777776543
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=99.29 E-value=1.1e-11 Score=104.57 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=70.0
Q ss_pred CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 640 ~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
+|+ +|.+|++...+.++|.|+|++| .+ ++.+.+|+|++... .......+++++.+|+|++.|.|+|+|+
T Consensus 3 AP~-~P~~l~~~~~~~~sv~lsW~~p--~~-~~~i~~Y~i~~~~~-------~~~~~~~t~~~~~~L~p~t~Y~~~V~A~ 71 (88)
T d1k85a_ 3 APT-APTNLASTAQTTSSITLSWTAS--TD-NVGVTGYDVYNGTA-------LATTVTGTTATISGLAADTSYTFTVKAK 71 (88)
T ss_dssp SCC-CCEEEEEEEECSSCEEEEEECC--SC-CSSEEEEEEEESSS-------EEEEESSSEEEECCCCSSCEEEEEEEEE
T ss_pred CcC-CCCCcEEEEecCCEEEEEEeCC--CC-CCCEEEEEEEccce-------EEEecCCCEEEECCCCCCCEEEEEEEEE
Confidence 565 8899999999999999999988 33 44588999976431 1122356899999999999999999999
Q ss_pred cCCC-cCCCCCceEEee
Q psy574 720 NRAG-TGPYSRPALLSL 735 (977)
Q Consensus 720 ~~~G-~g~~S~~~~~~t 735 (977)
|..| .|++|+++.++|
T Consensus 72 n~~G~~s~~S~~v~vtT 88 (88)
T d1k85a_ 72 DAAGNVSAASNAVSVKT 88 (88)
T ss_dssp ETTTEECCCCCCEEEEC
T ss_pred ECCCCcCCCCcCEEEEC
Confidence 9999 699999998875
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=1.9e-12 Score=116.73 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=75.8
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEec--C-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG--N-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~--~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
..+|+.+|.++.+..++.++|.|+|++|. ...+..|.+|.|+|+.. + ..........+..++++|.+|+|++.|.|
T Consensus 12 ~~~pp~~P~~p~v~~vt~~sv~l~W~~P~-~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f 90 (120)
T d1wfua_ 12 KVVPLSKPHPPVVGKVTHHSIELYWDLEQ-KEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKF 90 (120)
T ss_dssp TCCCCCCCCCCBCCCEETTEEEEECTTTS-CSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEE
T ss_pred cccCCCcCCCCEEeEecCCEEEEEEECCc-ccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeE
Confidence 34455577777788888999999999984 22233566777766532 1 22222334456778999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+|.+|.|++|+.+.++|....
T Consensus 91 rV~A~n~~G~s~~S~~~~~~T~~~~ 115 (120)
T d1wfua_ 91 RLKVTSPSGEYEYSPVVSVATTRES 115 (120)
T ss_dssp EEEEECSSSCEEECCCEEEECCCCC
T ss_pred EEEEEeCCcEeCCCCCEEEEeCCCC
Confidence 9999999999999999999887654
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.6e-13 Score=120.75 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=79.8
Q ss_pred eEEeccCCCCCCCCceeEEEE-ecCcEEEEEeeCCCCCC----CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCC
Q psy574 632 RAVRTLECEPSGVPQLTDPVL-LNATSVLLKWKPPPVGT----HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNL 706 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~-~~~~sv~v~W~~p~~~~----~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L 706 (977)
+.|+|.++.|+.+|.+|++.. .++++|.|+|++|..+. .++.|.+|+|++.. ..........++.+.+.|.+|
T Consensus 1 v~~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~--~~~~~~~~~~~~~~~~~i~~L 78 (117)
T d2cspa1 1 VEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKG--QRVAEVIFPTADSTAVELVRL 78 (117)
T ss_dssp SCCCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSS--SEEEEECCTTCSEEEEESHHH
T ss_pred CEEEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeec--ccceeeeeeccceeeeeccCC
Confidence 357899988888999999864 56679999999986443 34567777775432 222222334456678899999
Q ss_pred CCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 707 SAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 707 ~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
++++.|.|+|+|+|.+|.|++|.++.+.|..
T Consensus 79 ~~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~~ 109 (117)
T d2cspa1 79 RSLEAKGVTVRTLSAQGESVDSAVAAVPPEL 109 (117)
T ss_dssp HHHTCSCBEEEEEESSCCCCCCSCBCCCHHH
T ss_pred CCCcEEEEEEEEEcCCCcCCCCCCEEeeCCC
Confidence 9999999999999999999999999887753
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.6e-12 Score=107.37 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=69.4
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEEEecC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|...+.++.+.+|++++|.|.+ . .|.+.+.|+|||+.+......++.+..++ .|.|.+++.+|+|.|+|+|.|.
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~- 79 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEV-S-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG- 79 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEEC-S-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-
T ss_pred EEcCCCCEEEeCCCcEEEEEEE-C-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-
Confidence 5667889999999999999998 4 58889999999999976666667666543 6999999999999999999763
Q ss_pred ceeeeEeEEEEEEc
Q psy574 85 GTRESTDAVLRVLV 98 (977)
Q Consensus 85 g~~~s~~~~l~V~~ 98 (977)
+..+.|+|+.
T Consensus 80 ----~~~a~l~V~~ 89 (90)
T d1x44a1 80 ----QSSAKLSVDL 89 (90)
T ss_dssp ----EEEEEEEEEC
T ss_pred ----eEEEEEEEEE
Confidence 3457788764
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.3e-12 Score=128.74 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=80.2
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
.|++|.++.+...+.+++.|+|.+|.. .++.+.+|.|+|+...... +. ..........+.+.+
T Consensus 2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~-~ng~i~~Y~V~~~~~~~~~-----------~~-----~~~~~~~~~~~~~~~ 64 (196)
T d2dtge2 2 NPSVPLDPISVSNSSSQIILKWKPPSD-PNGNITHYLVFWERQAEDS-----------EL-----FELDYCLKGLKLPSR 64 (196)
T ss_dssp CCCCCEEEEEEECSSSCEEEEEECCCC-SSSSCSEEECCEEEECCCC-----------SC-----TTCSSSCSCCCCCC-
T ss_pred cCcCCcCCEEEeccCCEEEEEEECCCC-CCCcEEEEEEEEEcCCCCC-----------ce-----eEEeeEEecccccee
Confidence 389999999999999999999999887 5678999999998765432 10 011112234567888
Q ss_pred eEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeC
Q psy574 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMT 556 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~ 556 (977)
.|.|+|.|.|..|.+..+............. . +. .....+..+.+....
T Consensus 65 ~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~~------------------~~~~~~~~~~~~~~~ 113 (196)
T d2dtge2 65 TWSPPFESEDSQKHNQSEYEDSAGECCSCPK----T---------DS------------------QILKELEESSFRKTF 113 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEEcCCccccCcCCccceecCCCCc----c---------cc------------------ccccCCcCcEEEecc
Confidence 9999999999888776543322222200000 0 00 001112345556666
Q ss_pred CCeEEEEEEecC--CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC---CCc
Q psy574 557 STSVKLTWEILN--TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP---SNL 631 (977)
Q Consensus 557 ~tsv~lsW~~p~--~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~---s~~ 631 (977)
...+.+.|..+. ......|.+.+........... ......+++|.+|+|++.|.|+|+|+|+.|.+.. +..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~ 189 (196)
T d2dtge2 114 EDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFE----KVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAY 189 (196)
T ss_dssp ------------------------------CCSCSC----EECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCC
T ss_pred CCceeecccCcCCCccceEEEEEEeecCCCccEEEE----eccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcce
Confidence 677777787762 2222233333333222211111 1246689999999999999999999999988765 345
Q ss_pred eEEecc
Q psy574 632 RAVRTL 637 (977)
Q Consensus 632 ~~~~T~ 637 (977)
+.++|.
T Consensus 190 ~~~rT~ 195 (196)
T d2dtge2 190 VSARTM 195 (196)
T ss_dssp EEEECC
T ss_pred EEeeCC
Confidence 666654
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.9e-12 Score=110.26 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
|.+|.++++...+.++|.|+|++|.++.+.+|.|+|+..+. ..+..... ...+++.|.+|+|++.|.|+|+|+|..
T Consensus 11 P~~P~~~~~~~~~~~si~l~W~~p~~~~i~~Y~i~y~~~~~-~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 86 (102)
T d1x5za1 11 PGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEH-GEEQRITI---EPGTSYRLQGLKPNSLYYFRLAARSPQ 86 (102)
T ss_dssp CCCCEEEEEECSSSSEEEEEEECCSCCCCCEEEECBEESSS-CCCBCCEE---CSSSEEEEECCCTTCEEEECEEEECSS
T ss_pred CcCCCCeEEEEccCCEEEEEEECCCCCCccceEEEEEeCCC-CceEEEEc---CCcCEEEECCCCCCCEEEEEEEEEcCC
Confidence 34468899999999999999999977789999999998764 33332222 345789999999999999999999999
Q ss_pred eeCCCCCceEEeccCC
Q psy574 624 VDGKPSNLRAVRTLEC 639 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~ 639 (977)
|.|++|..+.++|.+.
T Consensus 87 G~g~~S~~v~~~T~es 102 (102)
T d1x5za1 87 GLGASTAEISARTMQS 102 (102)
T ss_dssp CEEEECCCEEEECCCC
T ss_pred CEeCCCCCEEEEcCCC
Confidence 9999999999999863
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=5.1e-12 Score=113.68 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=78.6
Q ss_pred eEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+|.++++...++++|.|+|++| .++.|.+|+|+|+..+. ..+. ..........++.|.+|+|++.|.|+|+|+|
T Consensus 14 ~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~-~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 91 (119)
T d1x5ha1 14 APQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASR-KSDV-TETLVSGTQLSQLIEGLDRGTEYNFRVAALT 91 (119)
T ss_dssp CCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTE-EEEE-ECCBCCTTCCEEEEECCCSSCEEEEECEEEE
T ss_pred CCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeeccc-ccce-eeeecCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence 4578999999999999999987 45689999999998763 1221 1222346678999999999999999999999
Q ss_pred cceeCCCCCceEEeccCCCCC
Q psy574 622 GSVDGKPSNLRAVRTLECEPS 642 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~~~P~ 642 (977)
..|.|++|..+.++|.+..|.
T Consensus 92 ~~G~G~~S~~~~~~T~~~~~~ 112 (119)
T d1x5ha1 92 INGTGPATDWLSAETFESDLD 112 (119)
T ss_dssp TTEEEEECCCEEEECCSSCCC
T ss_pred CCcCCCCCCCEEEEeCCCCCC
Confidence 999999999999999887664
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=7.6e-12 Score=107.43 Aligned_cols=84 Identities=26% Similarity=0.384 Sum_probs=72.4
Q ss_pred eEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
+|.++++..+++++|.|+|++| .++.|.+|+|+|+..+....|....+.. .+.+++.|.+|+|++.|+|+|+|+|.
T Consensus 9 ~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~ 87 (95)
T d2ibga1 9 VPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG-AHARSFKIAPLETATMYEFKLQSFSA 87 (95)
T ss_dssp CCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC-TTCCEEEECSCCTTCEEEEEEEEECS
T ss_pred CCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccC-CceeEEEEeeccCCeEEEEEEEEEeC
Confidence 3578999999999999999987 4566899999999988767777665543 67889999999999999999999999
Q ss_pred ceeCCCCC
Q psy574 623 SVDGKPSN 630 (977)
Q Consensus 623 ~g~g~~s~ 630 (977)
.|.|++|.
T Consensus 88 ~G~s~~Ss 95 (95)
T d2ibga1 88 ASASEFSA 95 (95)
T ss_dssp SCBCCCCC
T ss_pred CccCCCCC
Confidence 99998773
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=8.7e-12 Score=107.59 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=75.5
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
++..+++...+.++|.|+|++| .++.+.+|.|+|+..+.. .+....+. ...++++|.+|+|++.|.|+|+|+|..
T Consensus 6 ~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~-~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 82 (98)
T d1x5la1 6 QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKE-MQSYSTLK--AVTTRATVSGLKPGTRYVFQVRARTSA 82 (98)
T ss_dssp CCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSC-CSSCEEEE--ESSSEEEECSCCTTCEEEECEEEEETT
T ss_pred CCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeeccccc-ceeeEEec--CCceEEEECCCCCCCEEEEEEEEEcCC
Confidence 4567899999999999999998 667899999999987643 22222222 456899999999999999999999999
Q ss_pred eeCCCCCceEEeccC
Q psy574 624 VDGKPSNLRAVRTLE 638 (977)
Q Consensus 624 g~g~~s~~~~~~T~~ 638 (977)
|.|.+|..+.++|.+
T Consensus 83 G~g~~S~~v~~~T~~ 97 (98)
T d1x5la1 83 GCGRFSQAMEVETGK 97 (98)
T ss_dssp EECCCCCCEEEECCC
T ss_pred CCcCCCCCEEEEcCC
Confidence 999999999999974
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.27 E-value=4.1e-12 Score=109.42 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=67.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
+....+.+|+++.|.|.+ .|.|.|.|.|+|||+.|..... ..+.. ...++|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus 12 ~~~~~v~~G~~v~l~C~~-~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~ 89 (97)
T d3dara1 12 KRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-N 89 (97)
T ss_dssp CCEEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred cccEEECCCCcEEEEEEE-eEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-E
Confidence 344678999999999999 8999999999999999964332 22233 335689999999999999999999999974 4
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|+|
T Consensus 90 ~~~~l~V 96 (97)
T d3dara1 90 HTYHLDV 96 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5677776
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-11 Score=104.57 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=74.5
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..+++++|.|+|++|. +.+.+|.|+|+...... +...... .....+.|.+|.|++.|.|+|+|+|..|.|
T Consensus 5 P~n~~~~~~s~~si~l~W~~p~-~~~~~Y~i~y~~~~~~~-~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 80 (92)
T d1qg3a1 5 PQNPNAKAAGSRKIHFNWLPPS-GKPMGYRVKYWIQGDSE-SEAHLLD--SKVPSVELTNLYPYCDYEMKVCAYGAQGEG 80 (92)
T ss_dssp CEEEEEEECSTTCEEEEEECCS-SCCCEEEEEEEETTSCG-GGCEEEE--ESSSEEEECSCCTTCEEEEEEEEECSSCBC
T ss_pred CCCCEEEEccCCEEEEEEEecC-CCccceEEeeeeccccc-cEEEEec--CCccEEEECCCCCCcEEEEEEEEEeCCcCc
Confidence 3789999999999999999984 45889999999887533 3332222 466899999999999999999999999999
Q ss_pred CCCCceEEeccC
Q psy574 627 KPSNLRAVRTLE 638 (977)
Q Consensus 627 ~~s~~~~~~T~~ 638 (977)
++|..+.++|.|
T Consensus 81 ~~S~~~~~~T~e 92 (92)
T d1qg3a1 81 PYSSLVSCRTHQ 92 (92)
T ss_dssp CCCCCEEEECCC
T ss_pred CCCCCEEEEcCC
Confidence 999999999975
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.9e-12 Score=112.07 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=72.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecC-CCceEEEec-C----cEEEEcCCCCCCCeEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFE-NSKRLRLVD-G----TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~-~~~r~~~~~-~----g~L~I~~v~~~D~G~Y~C 78 (977)
+-|...|....+.+|+++.|.|.+ .|.| .|.|.|+|++..+... ...+..... + ..|.|.+++.+|+|.|+|
T Consensus 4 ~~fi~~~~~~~v~~G~~v~L~C~v-~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (104)
T d2aw2a1 4 QLYIKRQSEHSILAGDPFELECPV-KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC 82 (104)
T ss_dssp EECCCTTEEEEEETTSCEEEEEEE-ECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred cEEEecCCeEEEeCCCeEEEEEEE-EeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence 456778888999999999999999 7887 4899999988766422 222332222 2 249999999999999999
Q ss_pred EEEecCceeeeEeEEEEEE
Q psy574 79 VVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~ 97 (977)
.|.|..|...+..+.|.|.
T Consensus 83 ~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 83 SANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEEETTEEEECCCEEEEEE
T ss_pred EEEcCCCeEEEEEEEEEEE
Confidence 9999999877777888875
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.26 E-value=1.1e-11 Score=108.65 Aligned_cols=92 Identities=8% Similarity=0.048 Sum_probs=78.2
Q ss_pred EEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
+.++++...+.++|.|+|+++ .++.+.+|.|+|+..+....|....+.. ...++++|.+|.|++.|.|+|+|+|.
T Consensus 8 P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~N~ 86 (105)
T d1cfba2 8 PDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD-WRQNNIVIADQPTFVKYLIKVVAIND 86 (105)
T ss_dssp CSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECC-TTCCEEEECSCCSSCEEEEEEEEEET
T ss_pred CcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecC-CCccEEEECCCCCCCEEEEEEEEEeC
Confidence 467889999999999999975 5678999999999988777777655543 67789999999999999999999999
Q ss_pred ceeCCCCCc-eEEeccCC
Q psy574 623 SVDGKPSNL-RAVRTLEC 639 (977)
Q Consensus 623 ~g~g~~s~~-~~~~T~~~ 639 (977)
.|.|++|.. +..+|.|+
T Consensus 87 ~G~gp~S~~~v~~~t~Ed 104 (105)
T d1cfba2 87 RGESNVAAEEVVGYSGED 104 (105)
T ss_dssp TEECSSCCCCEEEESSSC
T ss_pred CcCCCCCCCcEeEcCCCC
Confidence 999998864 55677775
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.8e-11 Score=107.52 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=78.5
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEe
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF 620 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 620 (977)
+.+|+++.+..++.++|.|+|++| .++.+.+|.|+|+..+. ..+...... ....++++|.+|.|++.|.|+|+|.
T Consensus 11 P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~rV~A~ 88 (107)
T d1x5fa1 11 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI-ARERVENTS-HPGEMQVTIQNLMPATVYIFRVMAQ 88 (107)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTC-CCCEEEECS-STTCSEEEECSCCTTCEEEEEEEEE
T ss_pred CcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCC-CceEEEEEe-CCCccEEEecCCCCCCEEEEEEEEE
Confidence 345689999999999999999998 46689999999998764 333333333 3677899999999999999999999
Q ss_pred ecceeCCCCCceEEeccCC
Q psy574 621 FGSVDGKPSNLRAVRTLEC 639 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~ 639 (977)
|..|.|++|..+.++|.++
T Consensus 89 n~~G~g~~S~~i~v~T~~e 107 (107)
T d1x5fa1 89 NKHGSGESSAPLRVETQPE 107 (107)
T ss_dssp CSSCEEEECCCEEEECCCC
T ss_pred eCCCCcCCCCCEEEECCCC
Confidence 9999999999999998753
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=2.9e-11 Score=105.45 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCceeEEE----EecCcEEEEEeeCCCCC--CCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEE
Q psy574 643 GVPQLTDPV----LLNATSVLLKWKPPPVG--THNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 643 ~~P~~v~~~----~~~~~sv~v~W~~p~~~--~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 716 (977)
.||.++++. ....++|.|+|++|... ..++.+++|+|+|+..+...+... .....+.+.|.+|.+++.|.|+|
T Consensus 4 ~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~rV 82 (103)
T d1f6fb2 4 EPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIH-FTGHQTQFKVFDLYPGQKYLVQT 82 (103)
T ss_dssp CCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEE-EEETCSEEEECCCCTTCEEEEEE
T ss_pred CCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeee-cccceeEEEeCCCCcceEEEEEE
Confidence 488998875 33557899999999543 344588999999998764444333 33467899999999999999999
Q ss_pred EEEcCCCc-CCCCCceEEeec
Q psy574 717 AATNRAGT-GPYSRPALLSLT 736 (977)
Q Consensus 717 ~A~~~~G~-g~~S~~~~~~t~ 736 (977)
||.+.+|. |.||+++.+.++
T Consensus 83 ra~~~~G~wS~wS~~~~~~~P 103 (103)
T d1f6fb2 83 RCKPDHGYWSRWSQESSVEMP 103 (103)
T ss_dssp EEEESSSCCCCCCCCEEEECC
T ss_pred EEEeCCCCCCCCcCceeeECc
Confidence 99999997 999999998764
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3e-11 Score=105.61 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCceeEEE----EecCcEEEEEeeCCCCC--CCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEE
Q psy574 643 GVPQLTDPV----LLNATSVLLKWKPPPVG--THNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 643 ~~P~~v~~~----~~~~~sv~v~W~~p~~~--~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 716 (977)
.||.++.+. ....++|.|+|++|... ...+.+..|+++|+..+...... ......+.++|.+|++++.|.|+|
T Consensus 4 ~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~rV 82 (104)
T d3d48r2 4 DPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI-HFAGQQTEFKILSLHPGQKYLVQV 82 (104)
T ss_dssp CCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEE-EEEETCSEEEECC--CCCEEEEEE
T ss_pred cCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceee-eccccccEEEECCCCCCCEEEEEE
Confidence 488898875 33456799999999633 23457889999998866333333 334467889999999999999999
Q ss_pred EEEcCCCc-CCCCCceEEeec
Q psy574 717 AATNRAGT-GPYSRPALLSLT 736 (977)
Q Consensus 717 ~A~~~~G~-g~~S~~~~~~t~ 736 (977)
+|.|.+|. |+||+++.++|+
T Consensus 83 rA~n~~G~ws~wS~~~~v~tP 103 (104)
T d3d48r2 83 RCKPDHGYWSAWSPATFIQIP 103 (104)
T ss_dssp EEEESSSCCCCCCCCEEEECC
T ss_pred EEEeCCCCCCCCcCCEEEECc
Confidence 99999998 999999999876
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.3e-11 Score=109.09 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=78.3
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCC--CceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPA--SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
.+|.++++...++++|.|+|++| .++.+.+|.|+|+..+... .+............++.|.+|.|++.|.|+|+
T Consensus 10 ~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 89 (109)
T d1va9a1 10 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQ 89 (109)
T ss_dssp SCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEE
T ss_pred CCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEE
Confidence 34689999999999999999988 3568999999999887632 23333333345678999999999999999999
Q ss_pred EeecceeCCCCCceEEeccC
Q psy574 619 PFFGSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~ 638 (977)
|+|..|.|++|..+.++|.|
T Consensus 90 a~n~~G~g~~S~~v~~~T~e 109 (109)
T d1va9a1 90 AFNRAGTGPSSSEINATTLE 109 (109)
T ss_dssp EEETTEECCCCCCEECCCCS
T ss_pred EEcCCcCCCCCCCEEEEcCC
Confidence 99999999999999999975
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.9e-12 Score=111.21 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=72.1
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEee-cCCCceEEEec---------CcEEEEcCCCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPID-FENSKRLRLVD---------GTNLAIQDSRKTDD 73 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~-~~~~~r~~~~~---------~g~L~I~~v~~~D~ 73 (977)
.|...|.++.+.+|++++|.|.+ .|.| .|.|.|+|++.... .....++.+.. ...|.|.+++.+|+
T Consensus 2 ~F~~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 80 (113)
T d2dava1 2 LFIEKPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 80 (113)
T ss_dssp SCCSCCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred EEeECCceEEEeCCCEEEEEEEE-ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence 47889999999999999999999 7777 57999999875432 22233333321 13599999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCC
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P 100 (977)
|.|+|.|.|..|.. +..+.|.|..++
T Consensus 81 G~Y~C~a~N~~G~~-~~~~~L~V~~~~ 106 (113)
T d2dava1 81 GNYRCEVTYKDKFD-SCSFDLEVHEST 106 (113)
T ss_dssp EEEEEEEECSSCEE-EECCEEEEECCC
T ss_pred eEEEEEEEeCCCEE-EEEEEEEEEcCC
Confidence 99999999999974 567899998654
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=3.2e-11 Score=106.53 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=73.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeCCC----CceEEe---------ccceEEEccCccCCC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAMPE----DRMSVL---------PSRSLQLSDVRLEDA 163 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l~~----~~~~~~---------~~~~L~I~~v~~~D~ 163 (977)
|.|+..|.++.+.+|++++|.|.+.|.| .|.|.|+|++..... .++... ....|.|.+++.+|+
T Consensus 5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 84 (110)
T d2avga1 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT 84 (110)
T ss_dssp CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence 5788899999999999999999999988 678999998754321 122211 124699999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 164 GEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
|.|+|.|.|..|..++.+.|.|..+
T Consensus 85 G~Y~C~a~N~~G~~~~~~~L~V~~~ 109 (110)
T d2avga1 85 GGYRCEVSTKDKFDCSNFNLTVHEA 109 (110)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESC
T ss_pred cEEEEEEEECCCeEEEEEEEEEEec
Confidence 9999999999999999999999753
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.2e-11 Score=109.63 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=81.8
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
...|++|.++.+..++.+++.|+|.++.+ +++.+..|.|+++........ ....+..........++.+.+|.|
T Consensus 8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~-~~~~i~~y~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~L~p 81 (111)
T d1wisa1 8 PELPGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQVGVVGEGE-----EWLLIHQLSNEPDARSMEVPDLNP 81 (111)
T ss_dssp CCCCCCCEEEEEESCCSSCEEEEEECCCC-CSSCCSEEEEEECBSCCSTTS-----CCEEEEEEESCTTCSEEEECSCCT
T ss_pred CCCCcCCCCCEEEEcCCCEEEEEEeCCCC-CCCceeEEEEeeeecccCCCc-----ceeeeeeeecccceeEEEeCCCCC
Confidence 36789999999999999999999998876 788999999999865443210 011223333456678899999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
++.|.|+|+|.|..|.|.+|..+..+++
T Consensus 82 ~t~Y~frV~A~N~~G~s~~S~~s~~~~T 109 (111)
T d1wisa1 82 FTCYSFRMRQVNIVGTSPPSQPSRKIQT 109 (111)
T ss_dssp TSEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred CCEEEEEEEEEcCCcCCCCcCCCCCEEc
Confidence 9999999999999999999998887766
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.25 E-value=5.7e-12 Score=107.96 Aligned_cols=85 Identities=22% Similarity=0.372 Sum_probs=70.6
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCC--ceEEe-ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~--~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.|.|...|.+..+.+|+++.|.|.+.|.|.+ .+.|++++..+... +.... .+++|.|.++..+|+|.|+|.|.|..
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 81 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 81 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence 5788889999999999999999999998865 79999999988643 23332 55789999999999999999999999
Q ss_pred eeEE-EEEEE
Q psy574 175 GKIS-ASATL 183 (977)
Q Consensus 175 g~~~-~~~~L 183 (977)
|... ..+.|
T Consensus 82 G~~~s~~v~l 91 (94)
T d1biha1 82 GVASSRVISF 91 (94)
T ss_dssp EEEECCCEEE
T ss_pred CEEEEEEEEE
Confidence 9743 34444
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=6.1e-12 Score=108.21 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=67.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEE---eCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWK---KNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~---k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C 78 (977)
.|.|. .++++.+.+|++++|.|.+ .|.|.|.+.|. +++..+ .......+.. .++|.|.+++.+|+|.|+|
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~-~g~p~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 77 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDA--PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEE-ESCCCSSCEEEEEETTBCCC--CEEEEEEEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEE-eecCCCcEEEEEeeeeeeee--cCCceeEEEeecCceEEEECCCCHHHCeEEEE
Confidence 36786 6899999999999999999 78887755432 233333 1122223332 2579999999999999999
Q ss_pred EEEecCceeeeEeEEEEEE
Q psy574 79 VVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~ 97 (977)
+|.|..|...+..+.|.|+
T Consensus 78 ~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 78 MIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEEC
Confidence 9999999888888888874
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.24 E-value=1.2e-11 Score=109.22 Aligned_cols=89 Identities=30% Similarity=0.455 Sum_probs=70.4
Q ss_pred cCCeEEeC-CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-----C--ceEE-------e---ccceEEEccCc
Q psy574 98 VKPYIIRG-PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-----D--RMSV-------L---PSRSLQLSDVR 159 (977)
Q Consensus 98 ~~P~~~~~-p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-----~--~~~~-------~---~~~~L~I~~v~ 159 (977)
.+|.+... |.++.+.+|+++.|.|.+.|+|.|.|.|+|++..... + .... . ....|.|.+++
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 82 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence 35777665 7899999999999999999999999999997644211 0 0110 0 23579999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.+|+|.|+|.|.|..|...+.+.|+|.
T Consensus 83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 83 FEDAGEYTCLAGNSIGISFHSAWLTVL 109 (109)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence 999999999999999999999999873
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.4e-11 Score=106.27 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
.||.+|++...+++++.|+|++|......+.+..|+|+|+..+ ...........+.+.+.|.+|+|++.|.|+|||.|
T Consensus 4 ~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~~ 83 (104)
T d2b5ib2 4 MAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKP 83 (104)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEEEE
Confidence 3889999999999999999999965555667889999998765 22333445566788999999999999999999999
Q ss_pred CCCc----CCCCCceEEeecC
Q psy574 721 RAGT----GPYSRPALLSLTS 737 (977)
Q Consensus 721 ~~G~----g~~S~~~~~~t~~ 737 (977)
..|. +.+|.++.|+|.+
T Consensus 84 ~~g~~g~wS~wS~~v~~~T~P 104 (104)
T d2b5ib2 84 LQGEFTTWSPWSQPLAFRTKP 104 (104)
T ss_dssp SCCSSCCCCCCCCCEEEECCC
T ss_pred CCCCCCCCCCCcCCEEEECCC
Confidence 9885 5678889998753
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.8e-11 Score=105.09 Aligned_cols=89 Identities=18% Similarity=0.324 Sum_probs=73.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCC-------CCceEEe---ccceEEEccCc-cCCCeE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMP-------EDRMSVL---PSRSLQLSDVR-LEDAGE 165 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~-------~~~~~~~---~~~~L~I~~v~-~~D~G~ 165 (977)
.||.+...+....+.+|+.+.|.|.+.|.|.+ .+.|+|++.... ..++.+. ....|.|.++. .+|+|.
T Consensus 1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~ 80 (101)
T d3b5ha1 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 80 (101)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence 47889999999999999999999999999877 799999764331 2334443 23479999998 579999
Q ss_pred EEEEEEeCCeeEEEEEEEEEe
Q psy574 166 YVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 166 Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|+|.|.|..|..+..+.|.|.
T Consensus 81 Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 81 YRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEECCCEEEEEEEEEEC
Confidence 999999999999999999874
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.8e-11 Score=106.46 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=77.0
Q ss_pred eEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+|.++.+..+++++|.|+|+.+ .++.+.+|.|+|+..+.................+++|.+|+|++.|.|+|+|+|
T Consensus 4 ~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n 83 (101)
T d1x4ya1 4 GPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFN 83 (101)
T ss_dssp CCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred CCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEEEc
Confidence 3578999999999999999975 567899999999987753332222222336778999999999999999999999
Q ss_pred cceeCCCCCceEEeccC
Q psy574 622 GSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~ 638 (977)
..|.|++|..+.++|..
T Consensus 84 ~~G~s~~S~~~~~~T~~ 100 (101)
T d1x4ya1 84 EGGESEFSNVMICETKA 100 (101)
T ss_dssp TTCCCCCCCCEEEECCC
T ss_pred CCCCCCCCCcEEEEccC
Confidence 99999999999999874
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.9e-11 Score=108.00 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=72.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEee-cCCCceEEEec---------CcEEEEcCCCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPID-FENSKRLRLVD---------GTNLAIQDSRKTD 72 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~-~~~~~r~~~~~---------~g~L~I~~v~~~D 72 (977)
+.|...|.++.+.+|++++|.|.+ .|.| .|.|.|+|++.... .....++.... .+.|.|.+++.+|
T Consensus 5 ~~Fv~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (110)
T d2avga1 5 GLFVMRPQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (110)
T ss_dssp CSEEECCCCEEEETTSEEEEEEEE-ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred CEeEECCCeEEEECCCCEEEEEee-cCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence 468889999999999999999999 7777 57899999875442 22233333322 1369999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcC
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 99 (977)
+|.|+|.|.|..|.. +..+.|.|..+
T Consensus 84 ~G~Y~C~a~N~~G~~-~~~~~L~V~~~ 109 (110)
T d2avga1 84 TGGYRCEVSTKDKFD-CSNFNLTVHEA 109 (110)
T ss_dssp CEEEEEEEEETTEEE-EEEEEEEEESC
T ss_pred CcEEEEEEEECCCeE-EEEEEEEEEec
Confidence 999999999999975 56688888753
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.5e-11 Score=106.58 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=74.6
Q ss_pred eEEEEEeeE--eCCCeEEEEEEec--CCCccceEEEEEEecCCC--CCceEEEEeecCccceEEECCCCCCcEEEEEEEE
Q psy574 546 LIELTEVKP--MTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPP--ASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVP 619 (977)
Q Consensus 546 ~~~~l~~~~--~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 619 (977)
+|.++++.. .+.++|.|+|++| .++.+.+|.|+|+..... ..|.... .....+++.|.+|+|++.|.|+|+|
T Consensus 14 pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A 91 (111)
T d1x5ka1 14 PPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEP--VVGNRLTHQIQELTLDTPYYFKIQA 91 (111)
T ss_dssp CCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEE--ESTTCSEEEECSCCSSSEEEEEEEE
T ss_pred CCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEE--eCCCeeEEEECCCCCCCEEEEEEEE
Confidence 346676654 5678999999998 678899999999987652 3344333 3367789999999999999999999
Q ss_pred eecceeCCCCCceEEeccC
Q psy574 620 FFGSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 620 ~n~~g~g~~s~~~~~~T~~ 638 (977)
.|..|.|++|+.+.++|.+
T Consensus 92 ~n~~G~g~~S~~v~~~T~~ 110 (111)
T d1x5ka1 92 RNSKGMGPMSEAVQFRTPK 110 (111)
T ss_dssp ECSSCBCCCCCCEEEECCC
T ss_pred EcCCCCcCCCCCEEEECCC
Confidence 9999999999999999976
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.1e-12 Score=112.00 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=74.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce--EEeccceEEEccCccCCCe-EEEEEEEeCCe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM--SVLPSRSLQLSDVRLEDAG-EYVCEAENAVG 175 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~--~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 175 (977)
.|.|...+.+..+.+|+++.|.|.+.|.|.|.|.|++++..+..... .......|.|.+++.+|.| .|+|.|.|..|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G 81 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 81 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence 58888888899999999999999999999999999999887754211 1224468999999999999 69999999999
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
..+..+.|.|
T Consensus 82 ~~~~s~~l~V 91 (92)
T d2ifga1 82 RAEVSVQVNV 91 (92)
T ss_dssp ECCEEECCCC
T ss_pred EEEEEEEEEE
Confidence 9888888876
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.23 E-value=2.9e-11 Score=104.82 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=69.4
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
|.+|.++.+. ...++++|+|++| +++.+.+|.|+|+.......+....... ....++.+.+|+|++.|.|+|+|.|
T Consensus 6 P~~P~~~~v~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~p~t~Y~frV~A~n 83 (100)
T d1cfba1 6 PNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV-PNTDSSFVVQMSPWANYTFRVIAFN 83 (100)
T ss_dssp CCCCEEEEEE-ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEE-ETTCSEEEEECCSSEEEEEEEEEEE
T ss_pred CCcCcCcEEE-EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeec-CCceEEEEecCCCCCEEEEEEEEEe
Confidence 4456788876 4668999999998 5678999999999877544444433332 4567899999999999999999999
Q ss_pred cceeCCCCCce
Q psy574 622 GSVDGKPSNLR 632 (977)
Q Consensus 622 ~~g~g~~s~~~ 632 (977)
..|.|++|+..
T Consensus 84 ~~G~g~~S~~s 94 (100)
T d1cfba1 84 KIGASPPSAHS 94 (100)
T ss_dssp TTEECCCCCCC
T ss_pred CCcCCCCcCCC
Confidence 99999988744
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.6e-11 Score=107.45 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=67.3
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.|..+.+...+.++|.|+|++| ...++.+++|+|+|+... ..........+..++++|.+|+|++.|.|+|+|+|.
T Consensus 9 ~P~~p~~~~~~~~~v~l~W~pp--~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~ 86 (105)
T d2d9qb2 9 MDPSPEAAPPQAGCLQLSWEPW--QPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW 86 (105)
T ss_dssp CCC-------CCSCEEEEEECC--GGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred CCCCCEeecCCCCeEEEEEcCC--CCCCceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence 3446677777889999999998 666788999999999754 333333455677889999999999999999999999
Q ss_pred CCcCC---CCCceEEeec
Q psy574 722 AGTGP---YSRPALLSLT 736 (977)
Q Consensus 722 ~G~g~---~S~~~~~~t~ 736 (977)
+|.|. +|..+.++|.
T Consensus 87 ~g~G~~S~wS~~~~~~t~ 104 (105)
T d2d9qb2 87 PLPGHWSDWSPSLELRTT 104 (105)
T ss_dssp SSCCCCCCCCCCEEECCC
T ss_pred CCCCCCcCCCCCEEEeCC
Confidence 99975 5556666653
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.3e-11 Score=108.09 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=72.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeC----CCCceEEe---------ccceEEEccCccCCCeE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAM----PEDRMSVL---------PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l----~~~~~~~~---------~~~~L~I~~v~~~D~G~ 165 (977)
|+..|.++.+.+|++++|.|.+.|.| .|.|.|+|++... ...++.+. ....|.|.+++.+|+|.
T Consensus 3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 82 (113)
T d2dava1 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 82 (113)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence 67789999999999999999999988 5799999987543 12222221 12469999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeeCCe
Q psy574 166 YVCEAENAVGKISASATLTVQMAPI 190 (977)
Q Consensus 166 Y~C~a~n~~g~~~~~~~L~V~~~p~ 190 (977)
|+|.|.|..|..++.+.|.|..++.
T Consensus 83 Y~C~a~N~~G~~~~~~~L~V~~~~~ 107 (113)
T d2dava1 83 YRCEVTYKDKFDSCSFDLEVHESTG 107 (113)
T ss_dssp EEEEEECSSCEEEECCEEEEECCCC
T ss_pred EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence 9999999999999999999986543
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.8e-13 Score=113.22 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
.|.|...+.+..+.+|++++|.|.+ .|.|.|.|.|+|+|..+... ..+......+.|.|.+++.+|.| .|+|+|.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~ 79 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSAT-VMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 79 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEE-ECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeee-eeeeeeccceeEEEccccccccceEEEEEEEcC
Confidence 3788999999999999999999999 89999999999999877322 12222233467999999999999 799999999
Q ss_pred CceeeeEeEEEEE
Q psy574 84 AGTRESTDAVLRV 96 (977)
Q Consensus 84 ~g~~~s~~~~l~V 96 (977)
.|... ..+.|.|
T Consensus 80 ~G~~~-~s~~l~V 91 (92)
T d2ifga1 80 VGRAE-VSVQVNV 91 (92)
T ss_dssp TEECC-EEECCCC
T ss_pred CCEEE-EEEEEEE
Confidence 99754 4455544
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.8e-12 Score=106.44 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=64.6
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... +.+.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus 10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~---------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~ 80 (84)
T d2oz4a3 10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI---------GESVTVTRDLEGTYLCRARSTQGEVTREVTVN 80 (84)
T ss_dssp SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT---------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee---------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence 467889999999999999999999999999998765432 22456788999999999999999999999999
Q ss_pred EeeC
Q psy574 185 VQMA 188 (977)
Q Consensus 185 V~~~ 188 (977)
|..|
T Consensus 81 V~~P 84 (84)
T d2oz4a3 81 VLSP 84 (84)
T ss_dssp EECC
T ss_pred EECC
Confidence 9754
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.22 E-value=1.1e-11 Score=106.66 Aligned_cols=86 Identities=26% Similarity=0.449 Sum_probs=71.2
Q ss_pred CCeEEeCCCceEEeCC---CeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSAS---SIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G---~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.|...|.+..+.+| +++.|.|.+.|.|.|.+.|++++..+.. .+.....+..|.|..+..+|+|.|+|.|.|
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N 83 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATN 83 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEE
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEE
Confidence 5888899999888766 7999999999999999999999998853 234444556788888999999999999999
Q ss_pred CCeeE-EEEEEEE
Q psy574 173 AVGKI-SASATLT 184 (977)
Q Consensus 173 ~~g~~-~~~~~L~ 184 (977)
..|.. ++.+.|.
T Consensus 84 ~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 84 ARGTVVSREASLR 96 (97)
T ss_dssp TTEEEECCCEEEE
T ss_pred CCCEEEEEEEEEe
Confidence 99985 3456664
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.1e-11 Score=102.96 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=72.3
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|.++++...+.++|.|+|++| ++..|.+|.|+|+..+. .|.... ......+++.|.+|.|++.|.|+|+|.|..|
T Consensus 4 P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~--~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G 80 (93)
T d2vkwa2 4 PKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS--EWKPEI-RLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 80 (93)
T ss_dssp CEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTS--CCCCCE-EECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred CccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCc--ceeeee-eccCCceEEEEeccccceEEEEEEEEEcCCC
Confidence 478899999999999999999 56789999999998774 333222 2236778999999999999999999999999
Q ss_pred eCCCCCceEEecc
Q psy574 625 DGKPSNLRAVRTL 637 (977)
Q Consensus 625 ~g~~s~~~~~~T~ 637 (977)
.|.++. +.|+|.
T Consensus 81 ~s~ps~-~~~~T~ 92 (93)
T d2vkwa2 81 KSKAAH-FVFRTA 92 (93)
T ss_dssp ECCCEE-EEEECC
T ss_pred CcCCEe-EEEEec
Confidence 998885 667764
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.6e-11 Score=105.41 Aligned_cols=88 Identities=16% Similarity=0.038 Sum_probs=74.4
Q ss_pred EEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 549 LTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
.+++...+.++|.|+|++| .++.+.+|.|+|+..... .+...... .....+.|.+|+|++.|.|+|+|+|..|.|
T Consensus 6 ~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~-~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 82 (95)
T d2djsa1 6 IMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN-EFNSSMAR--SQTNTARIDGLRPGMVYVVQVRARTVAGYG 82 (95)
T ss_dssp CCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSC-STTCEEEE--ESSSEEEEESCCTTCEEEEEEEEEESSCEE
T ss_pred ccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccC-cceeEeec--CCccEEEEeecCCccEEEEEEEEEcCCCCC
Confidence 4788899999999999998 677899999999988753 33332222 456889999999999999999999999999
Q ss_pred CCCCceEEeccCC
Q psy574 627 KPSNLRAVRTLEC 639 (977)
Q Consensus 627 ~~s~~~~~~T~~~ 639 (977)
++|..+.++|.++
T Consensus 83 ~~S~~~~~~T~~d 95 (95)
T d2djsa1 83 KFSGKMCFQTLTD 95 (95)
T ss_dssp EECCCEEEECCCS
T ss_pred CCCCCEEEEeCCC
Confidence 9999999998763
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1e-11 Score=105.66 Aligned_cols=82 Identities=29% Similarity=0.442 Sum_probs=68.6
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEe--c---cceEEEccCccCCCeEEEEEEEeCCee-E
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--P---SRSLQLSDVRLEDAGEYVCEAENAVGK-I 177 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~--~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~ 177 (977)
.|.++.+.+|+++.|.|.+.|.|.+.+.|+|++..+.... ..+. . ...|.|.+++.+|+|.|+|.|.|..|. .
T Consensus 2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence 4678899999999999999999999999999999986543 2222 2 247999999999999999999999997 4
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|.|.
T Consensus 82 S~~~~l~V~ 90 (91)
T d1rhfa1 82 SQPVWLTVE 90 (91)
T ss_dssp CCCEEEEEE
T ss_pred EEEEEEEEE
Confidence 567888875
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.4e-11 Score=102.38 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=67.3
Q ss_pred CCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATL 183 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L 183 (977)
+....+.+|+.++|.|.+.+. +...+.|||||..+.... ....|.|.+++.+|+|.|+|+|.|..+.. +..+.|
T Consensus 7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i 82 (89)
T d1f2qa2 7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI 82 (89)
T ss_dssp ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEE
Confidence 445578899999999999554 667999999999886432 45689999999999999999999988864 577899
Q ss_pred EEeeCCe
Q psy574 184 TVQMAPI 190 (977)
Q Consensus 184 ~V~~~p~ 190 (977)
+|..+|+
T Consensus 83 ~V~~~Pr 89 (89)
T d1f2qa2 83 TVIKAPR 89 (89)
T ss_dssp EEECSCC
T ss_pred EEEeCCC
Confidence 9998774
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.3e-11 Score=103.31 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.+++.|+|++|. ++.|.+|+|+|+..+ ........+..+.++++|.+|+|++.|.|+|+|+|..
T Consensus 8 ~P~~l~v~~~t~~si~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~ 83 (95)
T d2fnba_ 8 QLTDLSFVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLING 83 (95)
T ss_dssp CCTTCEEECCCSSCEEEECCCCC----CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETT
T ss_pred cCCCeEEEEEcCCEEEEEEEecC----CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCC
Confidence 68899999999999999999883 346899999999866 4445556678889999999999999999999999999
Q ss_pred CcCCCCC
Q psy574 723 GTGPYSR 729 (977)
Q Consensus 723 G~g~~S~ 729 (977)
|.|.++.
T Consensus 84 g~s~p~~ 90 (95)
T d2fnba_ 84 GESAPTT 90 (95)
T ss_dssp EECCCCE
T ss_pred cEeCCEE
Confidence 9887663
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.7e-11 Score=109.36 Aligned_cols=98 Identities=22% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEE
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 716 (977)
+.|. +|.++++...+.++|.|+|++| ...++.|..|.++|+... ...+.........+.+.|.+|++++.|.|+|
T Consensus 15 d~P~-~P~~~~v~~~~~~sv~l~W~~p--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV 91 (127)
T d1ueya_ 15 DVPN-PPFDLELTDQLDKSVQLSWTPG--DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRV 91 (127)
T ss_dssp CSCC-CCEEEEEECCSSSCEEEEEECC--CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEE
T ss_pred ccCc-CCCCcEEEEecCCeEEEEEeCC--cccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEEE
Confidence 5675 8899999999999999999988 788899999999998764 3334444445577889999999999999999
Q ss_pred EEEcCCCcCCCCCceE-EeecCCC
Q psy574 717 AATNRAGTGPYSRPAL-LSLTSGP 739 (977)
Q Consensus 717 ~A~~~~G~g~~S~~~~-~~t~~~~ 739 (977)
+|+|.+|.|.+|+... ++|.+..
T Consensus 92 ~A~n~~G~s~~S~~s~~~~t~~~~ 115 (127)
T d1ueya_ 92 MAVNSIGKSLPSEASEQYLTKASE 115 (127)
T ss_dssp EEEESSCBCCCCSCCCCEECCCSS
T ss_pred EEEcCCcCcCCcCCcccEEcCCCC
Confidence 9999999999998753 5555543
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.7e-11 Score=102.43 Aligned_cols=80 Identities=28% Similarity=0.355 Sum_probs=69.4
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
+||.+|++...+.+++.|+|++|. +.+.+|+|.|+..+ ........+.++.++++|.+|+|++.|.|+|+|++.
T Consensus 2 d~P~~l~v~~vt~~sv~l~W~~p~-----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~ 76 (89)
T d1fnfa3 2 DSPTGIDFSDITANSFTVHWIAPR-----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNG 76 (89)
T ss_dssp CCCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEET
T ss_pred ccCcCCEEEEecCCEEEEEEEeCC-----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcC
Confidence 478999999999999999999883 56889999999866 445556777889999999999999999999999999
Q ss_pred CCcCCC
Q psy574 722 AGTGPY 727 (977)
Q Consensus 722 ~G~g~~ 727 (977)
.|.|++
T Consensus 77 ~g~s~p 82 (89)
T d1fnfa3 77 REESPL 82 (89)
T ss_dssp TEECCC
T ss_pred CcCcCC
Confidence 997653
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.21 E-value=1.7e-11 Score=105.44 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=67.9
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-----ccceEEEccCccCCCeEEEEEEEeCCeeE-E
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-----PSRSLQLSDVRLEDAGEYVCEAENAVGKI-S 178 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~ 178 (977)
+.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... +..+. ...+|.|.+++.+|+|.|+|.|.|..|.. +
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 89 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 89 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence 57889999999999999999999999999999988542 22221 33579999999999999999999999974 5
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..+.|+|.
T Consensus 90 ~s~~L~Vl 97 (97)
T d1biha3 90 HSLKLTVV 97 (97)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 67888874
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=8.8e-12 Score=109.11 Aligned_cols=95 Identities=34% Similarity=0.494 Sum_probs=79.2
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~i~~L~p~ 475 (977)
+|+||.++.+..++.++|.|+|.+|...++..+..|.++++..... .|.... .......+++.+|.|+
T Consensus 2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~L~p~ 70 (104)
T d1bpva_ 2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG-----------RWLKANFSNILENEFTVSGLTED 70 (104)
T ss_dssp CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSC-----------CCEECCCSCCCSSEEEECSCCSS
T ss_pred CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeeccccc-----------ceeEEEeeccceeEEEEcCCCCC
Confidence 5789999999999999999999998876778899999999886654 454443 4567788999999999
Q ss_pred CeEEEEEEEEcCCCC-CCCCCCCceEEe
Q psy574 476 LTYTFLVRALNSHGL-SAPSPLSDEIVL 502 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~-s~~S~~s~~~~~ 502 (977)
+.|.|+|+|+|..|. |++|..+..+++
T Consensus 71 t~Y~frV~A~n~~G~~s~~S~~s~~vt~ 98 (104)
T d1bpva_ 71 AAYEFRVIAKNAAGAISPPSEPSDAITC 98 (104)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEEECS
T ss_pred CEEEEEEEEEECCCCCCCCcCCCCCEEe
Confidence 999999999999996 677766666655
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.4e-11 Score=106.89 Aligned_cols=94 Identities=23% Similarity=0.432 Sum_probs=75.1
Q ss_pred CCCCCCCCCeEE--eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEEEc
Q psy574 396 TYPGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~--~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i~~ 471 (977)
.+|++|.++.+. ..+.++|.|+|.+|.+ +++++.+|.|+|+..+. .|.... ......+++|.+
T Consensus 9 ~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~-~~~~I~~Y~v~~~~~~~------------~~~~~~~~~~~~~~~~~i~~ 75 (108)
T d1wf5a1 9 QLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNA------------PWTVLLASVDPKATSVTVKG 75 (108)
T ss_dssp CCCCCCSSCEEEECSSSTTEEEEECCCCCC-CSSCEEEEEEEEECTTC------------CCEEEESSCCTTCCEEEEES
T ss_pred cCCCCCCCCEEEEEeccCCEEEEEEECCCC-CCCccEEEEEEEEeccC------------CceEEeeeecCCccEEEECC
Confidence 467888876544 5677899999999876 78899999999986543 333332 345677899999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
|.|++.|.|+|+|.|..|.|.+|..+..++.
T Consensus 76 L~p~t~Y~frV~A~N~~G~s~~S~~~~~~t~ 106 (108)
T d1wf5a1 76 LVPARSYQFRLCAVNDVGKGQFSKDTERVSL 106 (108)
T ss_dssp CCTTCEEEEEEEEEESSCEEEECCCCSCEEC
T ss_pred CCCCCEEEEEEEEEcCCcCCCCcCCcCCEEC
Confidence 9999999999999999999999988777665
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.20 E-value=1.8e-11 Score=107.54 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-Ccce--EEEEe----------cCCcCeEEecCCCCCc
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSAL--INMTV----------SASTPTLLLTNLSAGI 710 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~--~~~~~----------~~~~~~~~l~~L~p~t 710 (977)
||..+.+...+.++|.|+|.+| .+.++.|++|.|+|+..+ ...+ ..... ....+.++|.+|+|++
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P--~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 79 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVP--RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH 79 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEE--CCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSE
T ss_pred cCcCCEEEEEECCEEEEEEEeC--ccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCc
Confidence 3455567788999999999998 677889999999998754 2221 11111 2234579999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCce
Q psy574 711 RYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
.|.|+|+|.|.+|.|++|.+.
T Consensus 80 ~Y~frV~A~N~~G~s~~S~~s 100 (107)
T d2ic2a1 80 TYRFRILAVYSNNDNKESNTS 100 (107)
T ss_dssp EEEEEEEEEETTSCEEECCCC
T ss_pred EEEEEEEEEcCCCCCCCCCCC
Confidence 999999999999999988654
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=6.2e-11 Score=101.11 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCCCCceeEEEEecCc-EEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEEE
Q psy574 641 PSGVPQLTDPVLLNAT-SVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~-sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
|..||.++++....++ +|.|+|++|. ++.|.+|+|.|+..+ ........+.++.++++|.+|+||+.|.|+|+
T Consensus 1 P~~PP~~l~v~~~~~ts~i~v~W~~p~----~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~ 76 (94)
T d1fnfa1 1 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 76 (94)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCS----CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEE
T ss_pred CCCcCcCcEEEEecCCCEEEEEeeCCC----CCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEE
Confidence 5568999999887654 5999999883 234899999999765 33456677788899999999999999999999
Q ss_pred EEcCCCcCCCCCceEEe
Q psy574 718 ATNRAGTGPYSRPALLS 734 (977)
Q Consensus 718 A~~~~G~g~~S~~~~~~ 734 (977)
|++..|.|. ++..+
T Consensus 77 a~~~~g~s~---p~s~t 90 (94)
T d1fnfa1 77 TVKDDKESV---PISDT 90 (94)
T ss_dssp EEETTEECC---CEEEE
T ss_pred EEcCCCEeC---CEEEE
Confidence 999888754 45443
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.1e-11 Score=109.07 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=83.6
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
++.++++..++.++|.|+|+++ .+..+..|.++|+.......+... .........+.|.+|+|++.|.|+|+|.|..
T Consensus 19 ~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~ 97 (127)
T d1ueya_ 19 PPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHH-QTEVSGTQTTAQLNLSPYVNYSFRVMAVNSI 97 (127)
T ss_dssp CCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEE-EEEEESSCCEEEECCCTTCEECCEEEEEESS
T ss_pred CCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEE-EeecCCceEEEECCCccCCEEEEEEEEEcCC
Confidence 3578999999999999999998 567789999999987653332222 2222567789999999999999999999999
Q ss_pred eeCCCCCc-eEEeccCCCCCCCCceeE
Q psy574 624 VDGKPSNL-RAVRTLECEPSGVPQLTD 649 (977)
Q Consensus 624 g~g~~s~~-~~~~T~~~~P~~~P~~v~ 649 (977)
|.|.+|.. ..++|.+.+|..+|.++.
T Consensus 98 G~s~~S~~s~~~~t~~~~P~~~P~~~p 124 (127)
T d1ueya_ 98 GKSLPSEASEQYLTKASEPDKNPTSGP 124 (127)
T ss_dssp CBCCCCSCCCCEECCCSSCSSCSSCCC
T ss_pred cCcCCcCCcccEEcCCCCCCCCCCCCC
Confidence 99998875 557899999998997753
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.20 E-value=1.9e-11 Score=107.39 Aligned_cols=92 Identities=22% Similarity=0.296 Sum_probs=72.0
Q ss_pred CCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece------------ecCcCeE
Q psy574 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT------------NVPSPIL 467 (977)
Q Consensus 400 ~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~------------~~~~~~~ 467 (977)
||..+.+..++.++|.|+|.+|.+ ++.+|.+|.|+|+...... .|..... ......+
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P~~-~g~~I~~Y~ie~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRK----------NWQTTNDNIPYGKPKWNSELGKSFTA 70 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEECC-SSCCEEEEEEEEEECC-------------CCEEEEEEEECCSCSCSSSSEEEEEE
T ss_pred cCcCCEEEEEECCEEEEEEEeCcc-ccCCceEEEEEEEeccCCC----------cceEEEeeeeccceeeeecccceeEE
Confidence 566778999999999999999976 7889999999998765443 5655432 2234578
Q ss_pred EEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 468 TVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 468 ~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
+|.+|.|++.|.|+|+|.|..|.|.+|..+..+.+
T Consensus 71 ~i~~L~p~t~Y~frV~A~N~~G~s~~S~~s~~~~~ 105 (107)
T d2ic2a1 71 SVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 105 (107)
T ss_dssp EECSCCSSEEEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred EECCCcCCcEEEEEEEEEcCCCCCCCCCCCCCEEc
Confidence 89999999999999999999999999998888776
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.6e-11 Score=101.88 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=71.4
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.||.++++...+.+++.|+|++|. +.+.+|.|.|+..+ ........+.++.++++|.+|+|++.|.|+|+|++.
T Consensus 3 d~P~~l~v~~~s~~s~~l~W~~p~-----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~ 77 (90)
T d1tena_ 3 DAPSQIEVKDVTDTTALITWFKPL-----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG 77 (90)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCS-----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred CCCCCcEEEEecCCEEEEEEEeCc-----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence 378999999999999999999872 56889999998865 455566777889999999999999999999999999
Q ss_pred CCcCCCCC
Q psy574 722 AGTGPYSR 729 (977)
Q Consensus 722 ~G~g~~S~ 729 (977)
.|.|+++.
T Consensus 78 ~g~s~~~~ 85 (90)
T d1tena_ 78 DMSSNPAK 85 (90)
T ss_dssp TEECCCEE
T ss_pred CCEeCCEE
Confidence 99988654
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.19 E-value=2.1e-11 Score=102.44 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=64.1
Q ss_pred CceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEE
Q psy574 107 KDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLT 184 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~ 184 (977)
....+.+|++++|.|.+. +.|.+.+.|+|++..+.. ...+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|+
T Consensus 8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~ 83 (88)
T d2fcba2 8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT 83 (88)
T ss_dssp SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence 345688999999999995 557789999999987642 1245689999999999999999999998874 4678888
Q ss_pred EeeC
Q psy574 185 VQMA 188 (977)
Q Consensus 185 V~~~ 188 (977)
|+.|
T Consensus 84 V~~P 87 (88)
T d2fcba2 84 VQAP 87 (88)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8765
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.7e-11 Score=101.42 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
||.+|++...+.+++.|+|++|+ ++.+.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|+|+|++..
T Consensus 3 pP~~l~~~~~~~~sv~l~W~~p~----~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 78 (91)
T d1fnfa2 3 PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ 78 (91)
T ss_dssp CCEEEEEESCCSSCEEEEEECCT----TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEeCCCEEEEEEEecC----CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCC
Confidence 78999999999999999999883 456889999999866 4555667778899999999999999999999999998
Q ss_pred CcCC
Q psy574 723 GTGP 726 (977)
Q Consensus 723 G~g~ 726 (977)
|.|.
T Consensus 79 g~S~ 82 (91)
T d1fnfa2 79 HEST 82 (91)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8765
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.5e-11 Score=101.32 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
||.++++...+.++|.|+|++|. +.+.+|.|+|.... ........+..+.++++|.+|.|++.|.|+|+|+|..
T Consensus 2 pP~~l~~~~v~~~si~l~W~~p~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 76 (90)
T d1fnha1 2 APTDLKFTQVTPTSLSAQWTPPN-----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDT 76 (90)
T ss_dssp CCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCEEEEEecCCEEEEEEEccc-----eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCC
Confidence 78999999999999999999883 45678888887765 4445556678889999999999999999999999999
Q ss_pred CcCCCCCceEEee
Q psy574 723 GTGPYSRPALLSL 735 (977)
Q Consensus 723 G~g~~S~~~~~~t 735 (977)
|.|+++.. .+.|
T Consensus 77 g~s~~~~~-~~~T 88 (90)
T d1fnha1 77 LTSRPAQG-VVTT 88 (90)
T ss_dssp EECCCEEE-EEEC
T ss_pred CCcCCEeE-EEEc
Confidence 99998864 3444
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.3e-11 Score=105.32 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=71.7
Q ss_pred EEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-------ccceEEEccCccCCCeEEE
Q psy574 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 96 V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-------~~~~L~I~~v~~~D~G~Y~ 167 (977)
|+.||.+....+. ..+....|.|.+.|+|.|.+.|+|++..+..+ +..+. ....|.|.+++.+|+|.|+
T Consensus 2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (105)
T d1wwca_ 2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 78 (105)
T ss_dssp CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence 5567776554332 23455668889999999999999999998654 22221 1246999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCe
Q psy574 168 CEAENAVGKISASATLTVQMAPI 190 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~ 190 (977)
|.|.|..|..++.+.|.|..+|.
T Consensus 79 C~a~N~~G~~~~~~~v~V~~~P~ 101 (105)
T d1wwca_ 79 LIAKNPLGTANQTINGHFLKEPF 101 (105)
T ss_dssp EEEEETTEEEEEEEEECCSCCCC
T ss_pred EEEEcCCCEEEEEEEEEEEeCCC
Confidence 99999999999999999987663
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=4.1e-11 Score=102.04 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cce--EEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SAL--INMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~--~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
.+|.++++...+.++|.|+|++| ++.+.+|.|+|+..+. ... ......++.++++|.+|+|++.|.|+|+|+
T Consensus 2 daP~~l~v~~~~~~sv~v~W~~p-----~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 76 (92)
T d1tdqa2 2 DAPKNLRVGSRTATSLDLEWDNS-----EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAV 76 (92)
T ss_dssp CCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEec-----CCcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEE
Confidence 37899999999999999999998 3568899999988652 222 223345677899999999999999999999
Q ss_pred cCCCcCCCCCceEEee
Q psy574 720 NRAGTGPYSRPALLSL 735 (977)
Q Consensus 720 ~~~G~g~~S~~~~~~t 735 (977)
+..|.|.++ .+.++|
T Consensus 77 ~~~g~s~p~-~~~~~T 91 (92)
T d1tdqa2 77 MNSKQSIPA-TMNART 91 (92)
T ss_dssp ETTEECCCE-EEEEEC
T ss_pred eCCCEecCE-EEEEEC
Confidence 999998866 355544
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.7e-11 Score=106.41 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=70.0
Q ss_pred EecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC----CcceEEEEe-cCCcCeEEecCCCCCceEEEEEEEEcCCCcCC
Q psy574 652 LLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN----NSALINMTV-SASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 652 ~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~----~~~~~~~~~-~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 726 (977)
.+++++|.|+|++| . .++.|.+|+|+|+..+ ...+....+ .++.++++|.+|+|++.|.|+|+|+|..|.|+
T Consensus 26 ~~s~tsi~v~W~~p--~-~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~ 102 (120)
T d1ujta_ 26 VLTPTTVQVTWTVD--R-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM 102 (120)
T ss_dssp CCBTTEEEEEEEES--S-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred EeCCCeEEEEecCC--C-CCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcC
Confidence 35789999999987 3 4678999999998754 223333333 45788999999999999999999999999999
Q ss_pred CCCceEEeecCCC
Q psy574 727 YSRPALLSLTSGP 739 (977)
Q Consensus 727 ~S~~~~~~t~~~~ 739 (977)
+|+++.++|.+..
T Consensus 103 ~S~~~~~~T~e~~ 115 (120)
T d1ujta_ 103 DSESKTVRTTEES 115 (120)
T ss_dssp CCCCEEEEECSSC
T ss_pred CCCCEEEEeCCCC
Confidence 9999999997754
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.1e-11 Score=101.36 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=71.3
Q ss_pred CCceeEEEEecC--cEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 644 VPQLTDPVLLNA--TSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 644 ~P~~v~~~~~~~--~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
+|.++.+..... +++.|+|++|. .+.|.+|.|+|+..+ ...+....+.++.++++|.||+||+.|.|+|.|+|
T Consensus 2 aP~~~~vt~~~~~~~s~~vsW~~P~----~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~ 77 (93)
T d1owwa_ 2 GPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ 77 (93)
T ss_dssp CCCEEECCCCSSCTTCEEEEEECCS----SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEE
T ss_pred cCcccEEEEccCCCCEEEEEeeccc----ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEe
Confidence 456777665543 79999999983 357999999999866 55556778899999999999999999999999999
Q ss_pred CCCcCCCCCceEEee
Q psy574 721 RAGTGPYSRPALLSL 735 (977)
Q Consensus 721 ~~G~g~~S~~~~~~t 735 (977)
..|.|..+. ..|+|
T Consensus 78 ~~G~s~~~~-~~~tT 91 (93)
T d1owwa_ 78 QYGHQEVTR-FDFTT 91 (93)
T ss_dssp SSSCEEEEE-EEEEE
T ss_pred CCCccCcEE-EEEEe
Confidence 999988775 55554
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=6.1e-11 Score=103.71 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=72.4
Q ss_pred CCCceeEEEEec------CcEEEEEeeCCCCCC--CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 643 GVPQLTDPVLLN------ATSVLLKWKPPPVGT--HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 643 ~~P~~v~~~~~~------~~sv~v~W~~p~~~~--~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+||.+|.+...+ .++|.|+|++|.... ..+.+..|+|+|+..+...+... .....+.+.|.+|++++.|.|
T Consensus 2 dPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~-~~~~~~~~~i~~L~~~t~Y~f 80 (106)
T d1axib2 2 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMM-DPILTTSVPVYSLKVDKEYEV 80 (106)
T ss_dssp CCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEEC-CCBSSSEEEEEEEETTSCEEE
T ss_pred cCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceee-eecccceEEECCCCCCCEEEE
Confidence 488999886543 247999999995332 23378899999998764444333 234678999999999999999
Q ss_pred EEEEEcCCC--cCCCCCceEEeecC
Q psy574 715 SLAATNRAG--TGPYSRPALLSLTS 737 (977)
Q Consensus 715 ~V~A~~~~G--~g~~S~~~~~~t~~ 737 (977)
+|||.+..| .|+||+++++++++
T Consensus 81 rVRa~~~~~g~ws~wS~~v~v~~P~ 105 (106)
T d1axib2 81 RVRSKQRNSGNYGEFSEVLYVTLPQ 105 (106)
T ss_dssp EEEEEETTSSCCCCCCCCEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCEEEECCC
Confidence 999999765 49999999998764
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.6e-11 Score=104.09 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=61.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+..+.+|++++|.|.+ .+ |.+.+.|+++|+.+.. ...++.+..+++|.|.+++.+|+|.|+|+|.|..|...
T Consensus 6 ~~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~-~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~ 77 (92)
T d1olza1 6 QHFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKA-ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT 77 (92)
T ss_dssp EEEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCC-CSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred heeEeCCCEEEEEEEe-ec-cCCceeeecCccccee-eeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence 4789999999999999 56 6689999999999954 34567777789999999999999999999999877543
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=5.1e-11 Score=105.28 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=65.0
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--------ceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--------KRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--------~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
...+.+|++++|.|.+..|.|.+.|.|+|||..+..... ..+... ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus 11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 90 (110)
T d1f97a2 11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 90 (110)
T ss_dssp CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence 346889999999999866899999999999998743321 112222 23579999999999999999999999
Q ss_pred ceee-eEeEEEEEEc
Q psy574 85 GTRE-STDAVLRVLV 98 (977)
Q Consensus 85 g~~~-s~~~~l~V~~ 98 (977)
|... +..+.|.|..
T Consensus 91 G~~~~s~~v~l~V~~ 105 (110)
T d1f97a2 91 GTAMRSEAAHMDAVE 105 (110)
T ss_dssp SCCEECCCEEEEEES
T ss_pred CcEEEEEEEEEEEEe
Confidence 8754 4556777764
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.3e-12 Score=105.27 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=62.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
.|.++++.+|+.+.|.|.+ .|.|.|.|.|+|||..+... +.|.+++.+|+|.|+|+|.|..|.. +.
T Consensus 10 ~p~~~~~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~-~~ 75 (84)
T d2oz4a3 10 CPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEV-TR 75 (84)
T ss_dssp SCSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEE-EE
T ss_pred CCccEEEeCCCEEEEEEEE-eEcCccEEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEE-EE
Confidence 4778999999999999999 99999999999999887321 2345678899999999999999975 56
Q ss_pred eEEEEEEcC
Q psy574 91 DAVLRVLVK 99 (977)
Q Consensus 91 ~~~l~V~~~ 99 (977)
.+.|.|..|
T Consensus 76 ~~~l~V~~P 84 (84)
T d2oz4a3 76 EVTVNVLSP 84 (84)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 688888653
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=8.4e-11 Score=99.75 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=70.5
Q ss_pred ceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCc
Q psy574 646 QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724 (977)
Q Consensus 646 ~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~ 724 (977)
+||++...+.+++.|+|++|. +.+.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|+|+|++..|.
T Consensus 1 rnl~v~~~t~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~ 75 (91)
T d1fnaa_ 1 RDLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGD 75 (91)
T ss_dssp CCCEEEEECSSCEEEECCCCS-----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCC
T ss_pred CCCEEEEeCCCEEEEEEEccc-----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCcc
Confidence 478999999999999999873 56889999998866 555566677889999999999999999999999999999
Q ss_pred CCCCC-ceEE
Q psy574 725 GPYSR-PALL 733 (977)
Q Consensus 725 g~~S~-~~~~ 733 (977)
|+++. ++.+
T Consensus 76 s~~~s~~v~~ 85 (91)
T d1fnaa_ 76 SPASSKPISI 85 (91)
T ss_dssp SSCSCCCEEE
T ss_pred CCCcCCCEEE
Confidence 98654 4443
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.8e-11 Score=104.39 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=73.1
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEe--------ccceEEEccCccCCCeEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL--------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~--------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+.||.+..... ...+....|.|.+.|+|.|.|.|+|++..|..+. ..+. ....|.|.+++.+|+|.|+
T Consensus 2 ~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (103)
T d1wwbx_ 2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78 (103)
T ss_dssp CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred ccCCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence 45666543322 2467788899999999999999999999987543 2221 1246999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 168 CEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
|.|+|..|..++.+.|.|...|.+
T Consensus 79 C~a~N~~G~~~~~~~v~V~~~P~i 102 (103)
T d1wwbx_ 79 LIAKNEYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEECSSCEEEEEEEECCSCCCCC
T ss_pred EEEeccCCEEEEEEEEEEEeCCCC
Confidence 999999999999999999887754
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=8.3e-11 Score=100.27 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
.||.++++...+.+++.|+|++|. +.+.+|.|.|+..+. ......+.++.++++|.+|.|++.|.|+|+|+|..
T Consensus 3 ~~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 76 (93)
T d2cuma1 3 EAPRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSFHTPGG-QTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQ 76 (93)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCS-----SCCSEEEEEEECTTS-CEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTT
T ss_pred CcCCCCEEEEeCCCEEEEEEEccc-----cccccEEEEEEcccc-ccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCC
Confidence 378999999999999999999883 568899999988543 34556778889999999999999999999999999
Q ss_pred CcCCCCCceEEeec
Q psy574 723 GTGPYSRPALLSLT 736 (977)
Q Consensus 723 G~g~~S~~~~~~t~ 736 (977)
|.|+++. ..|+|.
T Consensus 77 g~s~~~~-~~~tT~ 89 (93)
T d2cuma1 77 SLLPPVS-TSFTTG 89 (93)
T ss_dssp BCCCCEE-EEEECC
T ss_pred CCCCCEE-EEEEeC
Confidence 9988764 455554
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.4e-10 Score=98.62 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=71.9
Q ss_pred EEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
.++++..++.++|.|+|++|. +.+.+|.|+|+.................+.++++|.+|.|++.|.|+|+|.+..|.|.
T Consensus 5 ~~l~v~~~~~~sv~v~W~~p~-~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~ 83 (92)
T d1tdqa2 5 KNLRVGSRTATSLDLEWDNSE-AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI 83 (92)
T ss_dssp EEEEEEEECSSCEEEEEECCS-SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred cCCEEEEecCCEEEEEEEecC-CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeCCCEec
Confidence 789999999999999999984 4589999999988754444444444456778999999999999999999999999997
Q ss_pred CCCceEEec
Q psy574 628 PSNLRAVRT 636 (977)
Q Consensus 628 ~s~~~~~~T 636 (977)
++ .+.++|
T Consensus 84 p~-~~~~~T 91 (92)
T d1tdqa2 84 PA-TMNART 91 (92)
T ss_dssp CE-EEEEEC
T ss_pred CE-EEEEEC
Confidence 66 466666
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.1e-11 Score=102.27 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=71.9
Q ss_pred EEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
..+++...+.++|.|+|++| +++.+.+|.|+|+..+. ..|.... ...++++|.+|.|++.|.|+|+|.|..|.
T Consensus 5 ~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~-~~~~~~~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 79 (93)
T d1x4xa1 5 KPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG-SMQICYC----GPGLSYEIKGLSPATTYYCRVQALSVVGA 79 (93)
T ss_dssp CCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTT-SCCEEEE----ESCSEEEEESCCSSCEEEEEEEEECSSCC
T ss_pred CCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCC-cceEeec----CCccEEEEcccceeeEEEEEEEEEECCcC
Confidence 34667788999999999998 67789999999998763 3333222 45688999999999999999999999999
Q ss_pred CCCCCceEEeccC
Q psy574 626 GKPSNLRAVRTLE 638 (977)
Q Consensus 626 g~~s~~~~~~T~~ 638 (977)
|++|..+.++|.+
T Consensus 80 s~~S~~~~~~Tpp 92 (93)
T d1x4xa1 80 GPFSEVVACVTPP 92 (93)
T ss_dssp CCBCCCEEEECCC
T ss_pred cCCCCcEEEEeCC
Confidence 9999999998853
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=5.3e-11 Score=103.32 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=79.0
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeec-CCCccccEEEEEccCCceEEEEeecc-cCCCC
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKIQNVS-RTAAP 263 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~g~s~L~I~~v~-~~d~G 263 (977)
.||.|...+....+.+|+.++|.|.+.|.|.+ .+.|++++...... ......++.+... .+.+.|.|.++. .+|+|
T Consensus 1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~~D~G 79 (101)
T d3b5ha1 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-QGRSELHIENLNMEADPG 79 (101)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-TTEEEEEECSCCTTTSSE
T ss_pred CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeC-CCEEEEEEeccccccCCE
Confidence 47888888989999999999999999999988 79999976433221 2223456666554 456799999998 57999
Q ss_pred eEEEEEEEcCCCceeEEEEEEEE
Q psy574 264 LIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 264 ~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.|+ |.|.|..|.....+.|.|+
T Consensus 80 ~Y~-C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 80 QYR-CNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEE-EEEEETTEEEEEEEEEEEC
T ss_pred EEE-EEEEECCCEEEEEEEEEEC
Confidence 999 9999999999999988874
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.16 E-value=9.9e-11 Score=98.35 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=68.7
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
+|.++++...+.+++.|+|++|. +.+.+|.|.|+..+. ......+..+.++++|.+|.|++.|.|+|+|++..|
T Consensus 2 aP~~l~v~~~t~~sv~v~W~~p~-----~~~~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~ 75 (87)
T d1qr4a1 2 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSG-KKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRH 75 (87)
T ss_dssp CCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEECTTC-CEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred cCcCcEEEEecCCEEEEEEECCC-----CCcceeEEEeecCCc-ceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCC
Confidence 68999999999999999999983 568899999988543 334566788899999999999999999999999999
Q ss_pred cCCCCC
Q psy574 724 TGPYSR 729 (977)
Q Consensus 724 ~g~~S~ 729 (977)
.|+++.
T Consensus 76 ~s~~~~ 81 (87)
T d1qr4a1 76 KSKPTT 81 (87)
T ss_dssp BCCCEE
T ss_pred CccCEE
Confidence 887653
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.1e-10 Score=99.55 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=74.4
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.++++...+.+++.|+|++| ++.+.+|.|.|+..+ ........+.++.++++|.+|+|++.|.|+|+|++.
T Consensus 5 ~~P~~l~v~~v~~~si~v~W~~p-----~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~ 79 (93)
T d1tdqa1 5 DGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRG 79 (93)
T ss_dssp CCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred CcCCCCEEEEeCCCEEEEEEEcc-----ccCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEeC
Confidence 48899999999999999999987 357889999999876 455566778888999999999999999999999999
Q ss_pred CCcCCCCCceEEee
Q psy574 722 AGTGPYSRPALLSL 735 (977)
Q Consensus 722 ~G~g~~S~~~~~~t 735 (977)
.|.|.++. ..|+|
T Consensus 80 ~g~s~~~~-~~~tT 92 (93)
T d1tdqa1 80 TNESDASS-TQFTT 92 (93)
T ss_dssp TEECCCEE-EEEEC
T ss_pred CCCcCCEE-EEEEC
Confidence 99988764 45544
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.16 E-value=5.8e-11 Score=104.76 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=66.4
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee----cCCCceEEE-------e---cCcEEEEcCCC
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----FENSKRLRL-------V---DGTNLAIQDSR 69 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----~~~~~r~~~-------~---~~g~L~I~~v~ 69 (977)
||.|... |.++++.+|++++|.|.+ .|.|.|.|.|+|++.... .....+... . ..+.|.|.+++
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 82 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEE-ECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence 5777664 889999999999999999 899999999999765432 111111111 1 12469999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
.+|+|.|+|+|.|..|... ..+.|+|
T Consensus 83 ~~D~G~Y~C~a~N~~G~~~-~~~~L~V 108 (109)
T d2fdbp2 83 FEDAGEYTCLAGNSIGISF-HSAWLTV 108 (109)
T ss_dssp GGGCEEEEEEEECSSCEEE-EEEEEEE
T ss_pred HHHCeEEEEEEEECCCEEE-EEEEEEE
Confidence 9999999999999999754 4577776
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.2e-12 Score=114.26 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=74.3
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc------------------------ceEEEEecCCcC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS------------------------ALINMTVSASTP 699 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~------------------------~~~~~~~~~~~~ 699 (977)
+|.+|++...++++|.|+|++|. ...+|.|++|.|+|++.... .........+.+
T Consensus 4 ~plnl~~~~~sstsv~lsW~pP~-~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T d2dtge3 4 ELLKFSYIRTSFDKILLRWEPYW-PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP 82 (125)
T ss_dssp CBCCCSEEEECSSCEEEECCCCC-SSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred CCEEEEEEEecCCEEEEEEeCCC-ccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence 67899999999999999999884 33468899999999874310 011122345678
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCc-----CCCCCceEEeec
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGT-----GPYSRPALLSLT 736 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~-----g~~S~~~~~~t~ 736 (977)
+++|.+|+|++.|.|+|+|+|.+|. |++|+++.++|+
T Consensus 83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~ 124 (125)
T d2dtge3 83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 124 (125)
T ss_dssp EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence 9999999999999999999999994 899999999885
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.6e-11 Score=105.06 Aligned_cols=91 Identities=29% Similarity=0.296 Sum_probs=76.1
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+++++.+. .+.++|+|+|++| .++.|.+|.|+|+..+ ..|...........+++.|.+|+|++.|.|+|+|+|..
T Consensus 10 PP~~~~~~-~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~ 86 (108)
T d1v5ja_ 10 PPRGLVAV-RTPRGVLLHWDPPELVPKRLDGYVLEGRQGS--QGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGS 86 (108)
T ss_dssp CCEEEEEE-ECSSSEEEEEECCSCCSSCCCBEEEEEEETT--CCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEETT
T ss_pred cCCCeEEE-EcCCEEEEEEEecccCCCceeEEEEEeeeee--eeeeeccccccceeeeEEEEeccCCcEEEEEEEEEeCC
Confidence 34778764 4788999999998 5678999999999865 56666555555678899999999999999999999999
Q ss_pred eeCCCCCceEEeccCC
Q psy574 624 VDGKPSNLRAVRTLEC 639 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~ 639 (977)
|.|.+|+.+.++|.+.
T Consensus 87 g~s~~S~~~~~~T~~~ 102 (108)
T d1v5ja_ 87 FVSDPSNTANVSTSGL 102 (108)
T ss_dssp EEEEECSCCCCCCSSC
T ss_pred CEeCCcCceEEECCCC
Confidence 9999999888888653
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.15 E-value=6e-11 Score=99.90 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
++|.++++...+++++.|+|++| +|.+.+|.|.|+..+.............++++|.+|.|++.|.|+|.|+|..
T Consensus 2 ~~P~~l~v~~v~~~s~~l~W~~~-----~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 76 (88)
T d1qr4a2 2 GSPKGISFSDITENSATVSWTPP-----RSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGF 76 (88)
T ss_dssp CCCSCEEEESCCSSCEEEEECCC-----SSCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred cCCcceEEEEecCCEEEEEEEcc-----cEeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 47899999999999999999987 3678999999998775555666778889999999999999999999999999
Q ss_pred CcCCCC
Q psy574 723 GTGPYS 728 (977)
Q Consensus 723 G~g~~S 728 (977)
|.|.+.
T Consensus 77 g~s~p~ 82 (88)
T d1qr4a2 77 EESEPI 82 (88)
T ss_dssp EECCCE
T ss_pred CCcCCE
Confidence 987643
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.1e-11 Score=102.97 Aligned_cols=91 Identities=29% Similarity=0.349 Sum_probs=75.5
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
|++|.++.+..++.+++.|+|.+|...++..+..|.++++..... .|..........+++|.+|.|++.
T Consensus 1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~~L~p~t~ 69 (96)
T d1x5xa1 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG-----------YGFKPKYDGEDLAYTVKNLRRSTK 69 (96)
T ss_dssp CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSS-----------CCCEEEEEESCSEEEEESCCSSCE
T ss_pred CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccce-----------eeeEEeecCCCCEEEECCCCCCCE
Confidence 678899999999999999999998876777788888888654433 455555567788999999999999
Q ss_pred EEEEEEEEcCCCCCCCCCCCce
Q psy574 478 YTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
|.|+|+|.|..|.|.+|.....
T Consensus 70 Y~~rV~A~n~~G~s~~S~~~~~ 91 (96)
T d1x5xa1 70 YKFKVIAYNSEGKSNPSEVVEF 91 (96)
T ss_dssp EEEEEEEECSSCEEEECCCEEE
T ss_pred EEEEEEEEcCCcEeCCCCCEEE
Confidence 9999999999999988865443
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.3e-11 Score=100.71 Aligned_cols=80 Identities=25% Similarity=0.469 Sum_probs=64.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
||.+.++|....+.+|++++|.|.+ .+.|.+ .+.|+|||..+.. .+..|.|.+++.+|+|.|+|.|.|.
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~s 70 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQV 70 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTTS
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEE-eeeeeecceeeeeeeeeeec---------ccceeEECCCChhhCCcEEEEecCC
Confidence 6889999999999999999999999 677766 5778999988832 2467999999999999999998765
Q ss_pred CceeeeEeEEEEEE
Q psy574 84 AGTRESTDAVLRVL 97 (977)
Q Consensus 84 ~g~~~s~~~~l~V~ 97 (977)
..+..+.|.|.
T Consensus 71 ---~~S~~v~l~V~ 81 (82)
T d1f2qa1 71 ---NESEPVYLEVF 81 (82)
T ss_dssp ---SCCCCEEEEEE
T ss_pred ---CCcccEEEEEE
Confidence 34567788775
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.3e-10 Score=99.31 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=70.6
Q ss_pred EEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 550 TEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
+.+...+.+++.|+|++| .++.+.+|.|+|+..+. ..|...... ....++.|.+|.|++.|.|+|+|+|..|.|+
T Consensus 6 ~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~-~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~ 82 (94)
T d2dn7a1 6 MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADE-ARPNTIDFG--KDDQHFTVTGLHKGTTYIFRLAAKNRAGLGE 82 (94)
T ss_dssp EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTC-SSCEEEEEE--TTCCEEEEECCCTTCEEEEEEEEEETTEEEE
T ss_pred EeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCC-CCcEEEEcC--CCccEEEEEccCCeeEEEEEEEEEcCCcCCC
Confidence 346678899999999999 67789999999998873 456554443 5778999999999999999999999999998
Q ss_pred CCCceEEeccCC
Q psy574 628 PSNLRAVRTLEC 639 (977)
Q Consensus 628 ~s~~~~~~T~~~ 639 (977)
++. ..+.|.++
T Consensus 83 ~s~-~~~~T~ed 93 (94)
T d2dn7a1 83 EFE-KEIRTPED 93 (94)
T ss_dssp EEE-EEEECCCC
T ss_pred Ccc-EEEeeCCC
Confidence 776 55666654
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.4e-10 Score=100.42 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=70.5
Q ss_pred EEEEeeEeCCCeEEEEEEec--CC-CccceEEEEEEecCCCCCceEEEEee--cCccceEEECCCCCCcEEEEEEEEeec
Q psy574 548 ELTEVKPMTSTSVKLTWEIL--NT-DYIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p--~~-~~i~~Y~v~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
..+.+ ...+++|+|+|++| .+ ..|.+|.|+|+..+. ..|....... ......+.|.+|.|++.|.|+|+|.|.
T Consensus 7 ~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~ 84 (101)
T d2haza1 7 SIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE-EVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNG 84 (101)
T ss_dssp EEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTC-CCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEET
T ss_pred ccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCC-cceeeeeeeeecccceeEEEecCCCCCeEEEEEEEEEeC
Confidence 44444 45678999999998 33 479999999998774 4555443322 234568999999999999999999999
Q ss_pred ceeCCCCCceEEeccC
Q psy574 623 SVDGKPSNLRAVRTLE 638 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~ 638 (977)
.|.|++|..+.++|.+
T Consensus 85 ~G~g~~S~~~~~~T~P 100 (101)
T d2haza1 85 KGLGEISAASEFKTQP 100 (101)
T ss_dssp TEECCCCCCEEEECCC
T ss_pred CcCcCCCCceeEEeCC
Confidence 9999999999998864
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.2e-11 Score=104.78 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=77.3
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
...|++|.++.+...+.++|.|+|.+|.. ++.++..|.|+++..... .+..........++.+.+|.|
T Consensus 8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~-~~~~i~~Y~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~p 75 (105)
T d1x3da1 8 SCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKGN-----------GEFCQCYMGSQKQFKITKLSP 75 (105)
T ss_dssp CSCCCCCCCCEEEEEETTEEEEECCCCCC-CSSCEEEEEEEECTTTSS-----------SCCEEEEEESCSEEEEESCCT
T ss_pred CCCCcCCCCCEEEEccCCEEEEEEECCCC-CcCccEEEEEEEecCCCc-----------ceeEEEecCCccEEEecCCcC
Confidence 36789999999999999999999999876 778999999998755433 233333456778999999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCce
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
++.|.|+|+|.|..|.|++|.....
T Consensus 76 ~t~Y~frV~A~N~~G~s~~S~~~~~ 100 (105)
T d1x3da1 76 AMGCKFRLSARNDYGTSGFSEEVLY 100 (105)
T ss_dssp TCEEEEECCEEESSCBCCCCCCEEE
T ss_pred CcEEEEEEEEECCCeEcCCCCcEEE
Confidence 9999999999999999998866543
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.6e-11 Score=102.00 Aligned_cols=90 Identities=31% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCCCCCeEE-eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 398 PGPPTKPTLV-NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 398 p~~P~~~~v~-~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
|++|..+.+. ....++|.|+|.+|..+++..+.+|.|+++..+.. .|.... .....+++|.+|.|++
T Consensus 2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~-----------~~~~~~-~~~~~~~~v~~L~p~t 69 (97)
T d2crza1 2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD-----------EPREVY-QGSEVECTVSSLLPGK 69 (97)
T ss_dssp CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSC-----------CCEEEE-EESCSEEEEESCCTTC
T ss_pred cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCC-----------ceeEee-cCCceEEEEcCCCCCE
Confidence 4555555543 34567899999998876777899999999865543 566654 4567889999999999
Q ss_pred eEEEEEEEEcCCCCCCCCCCCce
Q psy574 477 TYTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
.|.|+|+|.|..|.|++|..+..
T Consensus 70 ~Y~frV~A~N~~G~s~~S~~~~~ 92 (97)
T d2crza1 70 TYSFRLRAANKMGFGPFSEKCDI 92 (97)
T ss_dssp EEEECCEEECSSCBCCCCCCEEE
T ss_pred EEEEEEEEecCCeEcCCcCCCeE
Confidence 99999999999999998876543
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.4e-11 Score=107.91 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=78.0
Q ss_pred EEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCC----Cc-eEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 547 IELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPA----SV-AMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~----~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
|.++++..++.++|.|+|++| .++.+.+|.++|+...... .. .........+..++.|.+|.|++.|.|+|
T Consensus 18 P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 97 (125)
T d1uena_ 18 PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNV 97 (125)
T ss_dssp CSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEE
T ss_pred CcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEEEEEE
Confidence 357889999999999999988 4678899999998765411 11 11222233677899999999999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCC
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPS 642 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~ 642 (977)
+|+|..|.|++|..+.|+|.++.|+
T Consensus 98 ~A~n~~G~g~~S~~~~~~T~~~~pp 122 (125)
T d1uena_ 98 RVVNGKGEGPASPDRVFNTPEGSGP 122 (125)
T ss_dssp EEEESSCEEEECCCEEEECCCCCSS
T ss_pred EEEeCCcccCCCCCEEEECCCCCcC
Confidence 9999999999999999999998875
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=4.6e-11 Score=102.50 Aligned_cols=83 Identities=27% Similarity=0.440 Sum_probs=69.3
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASAT 182 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 182 (977)
+.+..+.+|++++|.|.+.+ +.+.|.|++++..+... +..+. ..++|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~ 88 (96)
T d1l6za2 10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK 88 (96)
T ss_dssp CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence 45678999999999999876 55789999999998653 44443 45689999999999999999999998875 45789
Q ss_pred EEEeeCC
Q psy574 183 LTVQMAP 189 (977)
Q Consensus 183 L~V~~~p 189 (977)
|.|..+|
T Consensus 89 L~V~~~P 95 (96)
T d1l6za2 89 LDIIFDP 95 (96)
T ss_dssp EEECCSC
T ss_pred EEEEcCC
Confidence 9998776
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=9.1e-11 Score=99.27 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=70.3
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
||.++++...+.+++.|+|++|. +.+.+|+|+|+..+........+....+.+.|.+|+||+.|.|+|+|+|..|
T Consensus 4 pP~~l~v~~~~~~si~v~W~~p~-----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 78 (90)
T d1fnha2 4 PPRRARVTDATETTITISWRTKT-----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA 78 (90)
T ss_dssp CCEEEEEEEECSSEEEEEEECCS-----SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETTE
T ss_pred cCCCCEEEEecCCEEEEEEECCC-----CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCCC
Confidence 78999999999999999999872 5689999999987665666777888899999999999999999999999999
Q ss_pred cCCC
Q psy574 724 TGPY 727 (977)
Q Consensus 724 ~g~~ 727 (977)
.|++
T Consensus 79 ~s~p 82 (90)
T d1fnha2 79 RSSP 82 (90)
T ss_dssp ECCC
T ss_pred CcCC
Confidence 8763
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.5e-10 Score=102.95 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=74.3
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCC----CCeeeeEEEEEEEecC--CcceEEEEecCCcCeEEecCCCCCceEEEEE
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGT----HNGVIRTYQIIVGGGN--NSALINMTVSASTPTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~----~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 716 (977)
.||.+|++. .+++++.|+|++|.... .++.+..|+|+|+..+ .............+.+.+.+|.|++.|.|+|
T Consensus 7 ~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV 85 (114)
T d2gysa2 7 PEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARV 85 (114)
T ss_dssp CCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEEEEE
T ss_pred CcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEEEEE
Confidence 599999986 46689999999995332 2446788999999866 2334445556667789999999999999999
Q ss_pred EEEcCCCc------CCCCCceEEeecCC
Q psy574 717 AATNRAGT------GPYSRPALLSLTSG 738 (977)
Q Consensus 717 ~A~~~~G~------g~~S~~~~~~t~~~ 738 (977)
||.|..|. |.||+++.+.|.++
T Consensus 86 Ra~~~~g~~~~g~wS~WS~~v~~~t~pg 113 (114)
T d2gysa2 86 RTRLAPGSRLSGRPSKWSPEVCWDSQPG 113 (114)
T ss_dssp EEEECTTSSCCBCCCCCCCCEEEECCCC
T ss_pred EEEeCCCCCCCCCccCCcCCEeeeCcCC
Confidence 99999886 57899999988764
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.14 E-value=4.4e-11 Score=100.63 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=64.0
Q ss_pred CCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASAT 182 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 182 (977)
.+....+.+|++++|.|.+. +.|.+.+.|+|||..+.. ...+..|.|.+++.+|+|.|+|.|.|..+.. +..+.
T Consensus 8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~ 83 (89)
T d1fnla2 8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 83 (89)
T ss_dssp ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce----eccccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence 34456689999999999985 567789999999987642 1255689999999999999999999998874 46788
Q ss_pred EEEee
Q psy574 183 LTVQM 187 (977)
Q Consensus 183 L~V~~ 187 (977)
|+|..
T Consensus 84 itV~E 88 (89)
T d1fnla2 84 ITITQ 88 (89)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88764
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.2e-10 Score=100.02 Aligned_cols=93 Identities=25% Similarity=0.401 Sum_probs=73.3
Q ss_pred CCCceeEEEEec-CcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 643 GVPQLTDPVLLN-ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 643 ~~P~~v~~~~~~-~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
.||.++++.... .+.+.|.|.+|. ...++.+..|+|+|+..+ ...........+.+++.|.+|+|++.|.|+|||.+
T Consensus 6 dPP~nl~v~~~~~~~~l~v~W~~P~-~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar~ 84 (105)
T d1erna2 6 DAPVGLVARLADESGHVVLRWLPPP-ETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARM 84 (105)
T ss_dssp CCCEEEEEEECCC-CCEEEEEECSS-SCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred CCCCCCEEEEecCCCcEEEEeeecc-ccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEEE
Confidence 588999988754 456999999885 556778889999999876 34445566667789999999999999999999997
Q ss_pred CC----C-cCCCCCceEEeec
Q psy574 721 RA----G-TGPYSRPALLSLT 736 (977)
Q Consensus 721 ~~----G-~g~~S~~~~~~t~ 736 (977)
.. | .|.||+++.++|+
T Consensus 85 ~~~~~~G~WSeWS~~v~~~tP 105 (105)
T d1erna2 85 AEPSFGGFWSAWSEPVSLLTP 105 (105)
T ss_dssp CSSSCCBCCCCCCCCEEEECC
T ss_pred CCCCCCCCCCCCCCCEEeeCc
Confidence 53 3 2678999998774
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=8.6e-11 Score=100.17 Aligned_cols=85 Identities=25% Similarity=0.394 Sum_probs=63.8
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCc--EEEEcCCCCCCCeEEEEEE
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT--NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g--~L~I~~v~~~D~G~Y~C~a 80 (977)
.+.|.....+ ..|.+|+.+.|.|.+ . .|.+.|.|+|||+.|.... .++.+. .++ .|.|.+++.+|+|.|+|+|
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v-~-~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a 81 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQMSG-SKYIFESIGAKRTLTISQCSLADDAAYQCVV 81 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEEC-S-SSSSCCEEEESSSEECCCS-SSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEE-C-CCCceEEEEEcCccceeee-eeEeeeccCCeEEeecCCCCceecEEEEEEE
Confidence 3566666554 679999999999998 4 4888999999999995433 233332 233 5999999999999999999
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
.|. +..+.|.|.
T Consensus 82 ~n~-----~~s~~l~V~ 93 (94)
T d1pd6a_ 82 GGE-----KCSTELFVK 93 (94)
T ss_dssp TTE-----EECCEEEEE
T ss_pred eeE-----EEEEEEEEE
Confidence 763 344567765
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=8.6e-11 Score=102.73 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=69.6
Q ss_pred EEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 549 LTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
.+++...++++|+|+|++| .++.+.+|.|+|+.......|....... ....++.|.+|+|++.|.|+|+|.|..|.|
T Consensus 12 ~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~frVra~n~~g~G 90 (105)
T d2d9qb2 12 SPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLP-LEALQYELCGLLPATAYTLQIRCIRWPLPG 90 (105)
T ss_dssp -------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEEC-SCEEEEEECSCCSCCCEEEEEEEEECSSCC
T ss_pred CCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeeeccc-CCcceeEEecccCCeEEEEEEEEEeCCCCC
Confidence 4567788999999999998 6678899999999988778887766554 677889999999999999999999999997
Q ss_pred CCC---CceEEeccC
Q psy574 627 KPS---NLRAVRTLE 638 (977)
Q Consensus 627 ~~s---~~~~~~T~~ 638 (977)
.+| ..+.++|.|
T Consensus 91 ~~S~wS~~~~~~t~e 105 (105)
T d2d9qb2 91 HWSDWSPSLELRTTE 105 (105)
T ss_dssp CCCCCCCCEEECCCC
T ss_pred CCcCCCCCEEEeCCC
Confidence 654 566676654
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=4.7e-11 Score=109.16 Aligned_cols=89 Identities=25% Similarity=0.358 Sum_probs=71.7
Q ss_pred cCCeEE-----eCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-----------------------------
Q psy574 98 VKPYII-----RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----------------------------- 143 (977)
Q Consensus 98 ~~P~~~-----~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~----------------------------- 143 (977)
.||.+. ..|.++.+.+|++++|.|.+.|.|.|.|.|+|++..+...
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence 466653 3467889999999999999999999999999987654211
Q ss_pred -ceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 144 -RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 144 -~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
++.+. ....|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus 83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 12221 22469999999999999999999999999999999885
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.13 E-value=4.9e-11 Score=99.22 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=64.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++.+.++|....+.+|++++|.|.+ .+.|.+ .+.|+|||..+.. .+.+|.|.+++.+|+|.|+|.|.+.
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~a~~s 74 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTNLS 74 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECSSS
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEe-ccCCCCeEEEEeeeceeeee---------cceeeEecCCcccCCEEEEEEccCC
Confidence 5678889999999999999999999 676666 5778899988842 2457999999999999999998764
Q ss_pred CceeeeEeEEEEE
Q psy574 84 AGTRESTDAVLRV 96 (977)
Q Consensus 84 ~g~~~s~~~~l~V 96 (977)
..|..+.|+|
T Consensus 75 ---~~S~~v~L~V 84 (84)
T d1fnla1 75 ---TLSDPVQLEV 84 (84)
T ss_dssp ---CCCCCEEEEE
T ss_pred ---CccccEEEEC
Confidence 3456677765
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=7e-11 Score=99.93 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=69.4
Q ss_pred EEEeeEe--CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 549 LTEVKPM--TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 549 ~l~~~~~--~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
++.+... .++++.|+|++|.+..|.+|+|+|+..+....|....+ .++..+++|.+|+|++.|+|+|.|+|..|.|
T Consensus 5 ~~~vt~~~~~~~s~~vsW~~P~~~~i~~Y~i~y~~~~~~~~~~~~~v--~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s 82 (93)
T d1owwa_ 5 EVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI--PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQ 82 (93)
T ss_dssp EEECCCCSSCTTCEEEEEECCSSSCEEEEEEEEEETTCSSCCEEEEE--CSSCCEEEECSCCSSEEEEEEEEEEESSSCE
T ss_pred ccEEEEccCCCCEEEEEeecccccceeEEEEEEeeccccceeeeecc--CCCccEEEECCcccCcEEEEEEEEEeCCCcc
Confidence 4555554 45899999999977789999999999876666665443 4688999999999999999999999999988
Q ss_pred CCCCceEEecc
Q psy574 627 KPSNLRAVRTL 637 (977)
Q Consensus 627 ~~s~~~~~~T~ 637 (977)
..+. ..|+|.
T Consensus 83 ~~~~-~~~tT~ 92 (93)
T d1owwa_ 83 EVTR-FDFTTT 92 (93)
T ss_dssp EEEE-EEEEEC
T ss_pred CcEE-EEEEec
Confidence 6664 666653
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.2e-10 Score=97.11 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=67.9
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..++.++|.|+|++|.++.+.+|.|+|+..+....+....+ ....++++|.+|+|++.|.|+|+|.+..|.|
T Consensus 4 P~~l~~~~~~~~sv~l~W~~p~~~~~~~y~v~y~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S 81 (91)
T d1fnfa2 4 PTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 81 (91)
T ss_dssp CEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred CCceEEEEeCCCEEEEEEEecCCCCcceeEEEEEECCCCccEEEEEe--CCCceEEEEeceeCCCEEEEEEEEEcCCCCC
Confidence 47899999999999999999977789999999998875444433333 3678899999999999999999999999987
Q ss_pred CC
Q psy574 627 KP 628 (977)
Q Consensus 627 ~~ 628 (977)
.+
T Consensus 82 ~p 83 (91)
T d1fnfa2 82 TP 83 (91)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.12 E-value=4.1e-11 Score=99.97 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=66.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-++.+.+.|....+.+|++|+|.|.+ .+.|.+ .+.|+|||+.+... ++.|.|.+++.+|+|.|+|.|.|
T Consensus 3 pkp~i~~~P~~~~v~~G~~v~L~C~~-~~~~~~~~~~w~~~g~~~~~~---------~~~l~i~~v~~~dsG~Y~C~a~n 72 (85)
T d2fcba1 3 PKAVLKLEPQWINVLQEDSVTLTCRG-THSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQ 72 (85)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEEC-SSCCCTTCCEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEECTT
T ss_pred CCCEEEECCCCeEEcCCCeEEEEEEE-eeccceeEEEeeccccccccc---------ccceEEeeccccCCcEEEEECCC
Confidence 36788999999999999999999999 566554 79999999998422 45799999999999999999986
Q ss_pred cCceeeeEeEEEEEE
Q psy574 83 VAGTRESTDAVLRVL 97 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~ 97 (977)
.. .|..+.|+|.
T Consensus 73 s~---~S~~v~l~V~ 84 (85)
T d2fcba1 73 TS---LSDPVHLTVL 84 (85)
T ss_dssp SB---CCCCEEEEEE
T ss_pred Cc---ccccEEEEEE
Confidence 53 4566788775
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=9.2e-11 Score=100.61 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=65.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE--CC-eeCCCCceEE-e---ccceEEEccCccCCCeEEEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR--LG-SAMPEDRMSV-L---PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k--~~-~~l~~~~~~~-~---~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|++ ++ ..+...+... . ..++|.|.++..+|+|.|+|.|.
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 80 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 80 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence 57886 5889999999999999999999887655433 22 2233222222 2 23579999999999999999999
Q ss_pred eCCeeE-EEEEEEEEe
Q psy574 172 NAVGKI-SASATLTVQ 186 (977)
Q Consensus 172 n~~g~~-~~~~~L~V~ 186 (977)
|..|.. +..+.|.|.
T Consensus 81 N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 81 TEGGVGISNYAELVVK 96 (96)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred eCCCeEEEEEEEEEEC
Confidence 999985 555888874
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=6.1e-11 Score=103.81 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=70.0
Q ss_pred cccceEEeCCCcEEEEE---ECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--------cEEEEcCCCCCCCeEEEEE
Q psy574 11 QPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C---~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--------g~L~I~~v~~~D~G~Y~C~ 79 (977)
.|.++.+.+|....+.| .+ .|.|.|.|.|+|||+.|......+..+... +.|.|.+++.+|+|.|+|+
T Consensus 3 ~p~~~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 81 (107)
T d1he7a_ 3 MPASVQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 81 (107)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEE
T ss_pred CCCEeEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEE
Confidence 46677777777777555 77 899999999999999996554444444321 3599999999999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCe
Q psy574 80 VKNVAGTRESTDAVLRVLVKPY 101 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~ 101 (977)
|.|..|.. +..+.|.|..+|.
T Consensus 82 A~N~~G~~-~~~i~v~v~~~P~ 102 (107)
T d1he7a_ 82 AANPFGQA-SASIMAAFMDNPF 102 (107)
T ss_dssp EEETTEEE-EEEEEECCCSCTT
T ss_pred EEeCCCEE-EEEEEEEEEcCCC
Confidence 99999974 5668888888873
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.5e-10 Score=97.43 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=67.7
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
.||.+|++...+++++.|+|++|. . +.+..|+|+|+..+........ ....+.++|.+|.|++.|.|+|||.+..
T Consensus 4 ~~P~nl~v~~~~~~~v~l~W~~p~--~--~~~~~y~v~y~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~frVRa~~~~ 78 (95)
T d2b5ic1 4 WAPENLTLHKLSESQLELNWNNRF--L--NHCLEHLVQYRTDWDHSWTEQS-VDYRHKFSLPSVDGQKRYTFRVRSRFNP 78 (95)
T ss_dssp CCCEEEEEEEEETTEEEEEEECSS--C--STTCEEEEEEEETTCSSCEEEE-ECSSCEEEECSCCTTSCEEEEEEEECCS
T ss_pred cCCCCCEEEEEeCCEEEEEECCCC--C--ceeEEEEEEEEcCCCceeeEee-ecccceeEcCCCCCCCEEEEEEEEeeCC
Confidence 388999999999999999999883 2 4567899999987644443333 3467899999999999999999999765
Q ss_pred Cc------CCCCCceE
Q psy574 723 GT------GPYSRPAL 732 (977)
Q Consensus 723 G~------g~~S~~~~ 732 (977)
+. +.+|+|++
T Consensus 79 ~~~~~g~WSeWS~pv~ 94 (95)
T d2b5ic1 79 LCGSAQHWSEWSHPIH 94 (95)
T ss_dssp SSCCCCCCCCCCCCEE
T ss_pred CCCCCCCccCCCCcee
Confidence 42 56777775
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=4.4e-11 Score=101.08 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=65.8
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.++++...+.+++.|+|++| ++.|.+|.|+|+..+ ........+..+.++++|.+|.|++.|.|+|+|+|.
T Consensus 2 daP~nl~v~~~~~~s~~l~W~~p-----~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~ 76 (89)
T d1fnha3 2 DAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKN 76 (89)
T ss_dssp CCCEEEEEEEEETTEEEEEEECC-----SSCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESS
T ss_pred ccCcCCEEEEecCCEEEEEEeCC-----CcCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcC
Confidence 37899999999999999999987 256899999999865 333333445677889999999999999999999999
Q ss_pred CCcCC
Q psy574 722 AGTGP 726 (977)
Q Consensus 722 ~G~g~ 726 (977)
.|.|.
T Consensus 77 ~g~S~ 81 (89)
T d1fnha3 77 NQKSE 81 (89)
T ss_dssp SCEEE
T ss_pred CCEeC
Confidence 88754
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.9e-11 Score=103.60 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=70.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC--CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
+.+|..+.+.+|+.+.|.|.+..+.|.+.|.|+|+|..+... ...++.. .+++|.|.+++.+|+|.|+|+|.|..|.
T Consensus 6 ~~~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~ 84 (101)
T d1iray1 6 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYC 84 (101)
T ss_dssp EECCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-ETTEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred cCCCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-cCCEEEeccceecCCEEEEEEEECCCCe
Confidence 346777889999999999988667899999999998765433 2334443 3678999999999999999999999887
Q ss_pred eeeEeEEEEEEc
Q psy574 87 RESTDAVLRVLV 98 (977)
Q Consensus 87 ~~s~~~~l~V~~ 98 (977)
.. ..+.|.|..
T Consensus 85 ~~-~~~~L~V~~ 95 (101)
T d1iray1 85 LR-IKISAKFVE 95 (101)
T ss_dssp EE-EEEEEEEEC
T ss_pred EE-EEEEEEEEe
Confidence 54 457888864
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.5e-10 Score=100.56 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=72.9
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
.+|.+|++...+.+++.|+|++|. +.+.+|+|.|+..+. ......+.++.++++|.+|+|++.|.|+|+|++..
T Consensus 2 ~~P~~l~~~~~t~~si~l~W~~p~-----~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~ 75 (102)
T d2cuha1 2 DGPTQLRALNLTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGA-PPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGP 75 (102)
T ss_dssp SSCEEEECCCCSSSCEEEEEECCS-----SCCSEEEEEEECSSS-CCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETT
T ss_pred cCCCccEEEEeCCCEEEEEEEeee-----ccceeeEEEEEeccc-cceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCC
Confidence 378999999999999999999872 568899999987543 33345567889999999999999999999999999
Q ss_pred CcCCCCCceEEeecCC
Q psy574 723 GTGPYSRPALLSLTSG 738 (977)
Q Consensus 723 G~g~~S~~~~~~t~~~ 738 (977)
|.|.++. +.++|...
T Consensus 76 ~~s~~~~-~~~~T~~~ 90 (102)
T d2cuha1 76 NLTSPAS-ITFTTGLE 90 (102)
T ss_dssp EECCCEE-EEEESCCC
T ss_pred CCcCCEE-EEEECCCC
Confidence 9887664 55666543
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.2e-10 Score=101.83 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=62.0
Q ss_pred CceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-C-cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 645 PQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-N-SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 645 P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
|..+.+.....++|.|+|++| ...++.+++|+|+|+... . ..........+.++++|.+|.|++.|.|+|+|.+.+
T Consensus 11 P~~p~~~~~~~~~i~v~W~pp--~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~ 88 (106)
T d1cd9b2 11 DIGPDVVSHQPGCLWLSWKPW--KPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSS 88 (106)
T ss_dssp CC-------CCSCEEEEEECC--GGGTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESS
T ss_pred CCCCeEecCCCCEEEEEEcCc--ccCCccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCC
Confidence 345566677889999999998 677888999999998754 3 333333445678899999999999999999999999
Q ss_pred CcCCCCC
Q psy574 723 GTGPYSR 729 (977)
Q Consensus 723 G~g~~S~ 729 (977)
|.|.||+
T Consensus 89 g~g~wS~ 95 (106)
T d1cd9b2 89 LPGFWSP 95 (106)
T ss_dssp SCCCCCC
T ss_pred CCCCCcC
Confidence 9976664
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.11 E-value=1.3e-11 Score=104.13 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|...+.++.+.+|+++.|.|.+ +.|.+.+.|+|||+.+..+. ++.+..++ .|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~i~~~l~d~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 78 (89)
T d1tiua_ 3 EVEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASP--DCEIIEDGKKHILILHNCQLGMTGEVSFQAANA 78 (89)
T ss_dssp CCSBCCCCEEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSS--SCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred EEEcCCcCEEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccce--eEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence 56778899999999999999998 47889999999999996544 44444333 6999999999999999998764
Q ss_pred CceeeeEeEEEEEE
Q psy574 84 AGTRESTDAVLRVL 97 (977)
Q Consensus 84 ~g~~~s~~~~l~V~ 97 (977)
. ..+.|.|.
T Consensus 79 ~-----~sa~l~V~ 87 (89)
T d1tiua_ 79 K-----SAANLKVK 87 (89)
T ss_dssp B-----CCEEEEEE
T ss_pred E-----EEEEEEEE
Confidence 2 34677775
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4e-11 Score=101.61 Aligned_cols=78 Identities=22% Similarity=0.205 Sum_probs=65.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
.+|.+...+....+.+|+++.|.|.+.|.|. ++|+|+|++..+...+... ..+++|.|.+++.+|+|.|+|.|.|..+
T Consensus 5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 84 (93)
T d1n26a1 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA 84 (93)
T ss_dssp CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCccc
Confidence 4678888888899999999999999987654 6899999999887654433 3678899999999999999999987643
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.2e-10 Score=100.90 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=72.8
Q ss_pred EEEEEeeEeCCCeEEEEEEec---C---CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEe
Q psy574 547 IELTEVKPMTSTSVKLTWEIL---N---TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF 620 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p---~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 620 (977)
|.++++..+++++|+|+|++| . ...+.+|.|+|+..+.... ..... .....+++|.||.|++.|.|+|+|+
T Consensus 5 P~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~-~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~ 81 (100)
T d1x5ja1 5 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYKNA--NATTLSYLVTGLKPNTLYEFSVMVT 81 (100)
T ss_dssp CEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSC-CCEEC--CBCSSEEEEESCCTTCEECCEEEEE
T ss_pred CcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcc-eeEec--CCCccEEEECCCCCCCEEEEEEEEE
Confidence 478999999999999999987 1 2455689999988775322 22222 2456789999999999999999999
Q ss_pred ecceeCCCCCceEEeccC
Q psy574 621 FGSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~ 638 (977)
|..|.|++|..+.++|.|
T Consensus 82 n~~g~s~~S~~~~~~T~e 99 (100)
T d1x5ja1 82 KGRRSSTWSMTAHGTTFE 99 (100)
T ss_dssp CSSCBCCCCCCCCEECCC
T ss_pred eCCcCcCCCCeEEEEecc
Confidence 999999999999999986
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=1.4e-10 Score=97.01 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=68.8
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
.+|.++++...+.+++.|+|++|. +.+.+|.|.|+..+. ......+.+..++++|.+|.|++.|.|+|+|++..
T Consensus 2 ~~P~nl~v~~~~~~s~~l~W~~p~-----~~~~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~ 75 (86)
T d1tdqa3 2 DSPRDLMVTASSETSISLIWTKAS-----GPIDHYRITFTPSSG-ISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGR 75 (86)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCC-----SCCSEEEEEEECSSS-CCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETT
T ss_pred ccCCCCEEEEecCCEEEEEEeCCC-----CCccceEEEEecccc-cceEEEeCCCccEEEECCCccccEEEEEEEEEcCC
Confidence 378999999999999999999983 568899999987543 33445667889999999999999999999999999
Q ss_pred CcCCCCC
Q psy574 723 GTGPYSR 729 (977)
Q Consensus 723 G~g~~S~ 729 (977)
|.|.++.
T Consensus 76 ~~s~p~~ 82 (86)
T d1tdqa3 76 QQSLEST 82 (86)
T ss_dssp EECCCEE
T ss_pred CEECCEE
Confidence 9887654
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=7.7e-11 Score=100.75 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.+|++...+.++|.|+|++|. +.+.+|.|.|+..+ .............++++|.+|.|++.|.|+|+|+|..
T Consensus 4 ~P~~l~v~~vt~~sv~l~W~~p~-----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 78 (94)
T d1j8ka_ 4 RPKGLAFTDVDVDSIKIAWESPQ-----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD 78 (94)
T ss_dssp CCCCCEEEEEETTEEEEECCCCS-----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred CCCCCEEEEecCCEEEEEEeCCC-----ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 77899999999999999999882 55789999998865 3333334556788999999999999999999999999
Q ss_pred CcCCCC
Q psy574 723 GTGPYS 728 (977)
Q Consensus 723 G~g~~S 728 (977)
|.|.+.
T Consensus 79 g~S~p~ 84 (94)
T d1j8ka_ 79 MESQPL 84 (94)
T ss_dssp CCCCCE
T ss_pred CCcCCE
Confidence 876644
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.4e-11 Score=112.18 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=78.7
Q ss_pred EeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCC--------eeeeEEEEEEEecCCcceEEEEecCCcCeEEecC
Q psy574 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN--------GVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705 (977)
Q Consensus 634 ~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~n--------g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 705 (977)
.++.+..|+ .|....+..++.+++.|+|++|.. ..+ ..+..|+|.++..+..........+..++++|.+
T Consensus 11 ~~~~~~~~~-~~~~P~V~~v~~~sv~l~W~~P~~-~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (137)
T d1wk0a_ 11 TKAFEALLS-NIVKPVASDIQARTVVLTWSPPSS-LINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLND 88 (137)
T ss_dssp HHHHHHHTT-CCCCCEEESCCSSCEEEECCCCCC-CSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECS
T ss_pred EEEeccCCC-CCCCCEEEEeEcCEEEEEEeCcCc-CCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECC
Confidence 344444454 334456788889999999999852 222 1467899988775533333344566789999999
Q ss_pred CCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 706 L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|++.|.|+|+|+|.+|.|++|+++.|+|....
T Consensus 89 L~P~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~ 122 (137)
T d1wk0a_ 89 LKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCE 122 (137)
T ss_dssp CCTTCEECEEEEEEETTEECCCCCCCCEECCCSS
T ss_pred CCCCcEEEEEEEEEcCCcccCCCCCEEEECCCCC
Confidence 9999999999999999999999999999997655
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.3e-10 Score=101.37 Aligned_cols=87 Identities=26% Similarity=0.302 Sum_probs=68.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCC---C-ceEEec-----cceEEEccCccCCCeEEEEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPE---D-RMSVLP-----SRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~---~-~~~~~~-----~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+.|+..+.+..+.+|+++.|.|.+.|.| .|.|.|+|++..+.. . ...... ...|.|.+++.+|+|.|+|.
T Consensus 4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (104)
T d2aw2a1 4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS 83 (104)
T ss_dssp EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence 3466778888999999999999999988 589999999876531 1 111211 12599999999999999999
Q ss_pred EEeCCeeEE-EEEEEEEe
Q psy574 170 AENAVGKIS-ASATLTVQ 186 (977)
Q Consensus 170 a~n~~g~~~-~~~~L~V~ 186 (977)
|.|..|... ..+.|.|.
T Consensus 84 A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 84 ANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEETTEEEECCCEEEEEE
T ss_pred EEcCCCeEEEEEEEEEEE
Confidence 999999854 46788775
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=7.9e-11 Score=100.80 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=72.3
Q ss_pred CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEE
Q psy574 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718 (977)
Q Consensus 640 ~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A 718 (977)
.|+++|.++++...+.+++.|+|++| .+. |..++|.|.|+..+ .............+.+.+.+|.+++.|.|+|+|
T Consensus 2 ~PP~~P~n~~~~~~~~~si~~~W~p~--~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A 78 (95)
T d1bqua1 2 LPPEKPKNLSCIVNEGKKMRCEWDGG--RET-HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 78 (95)
T ss_dssp CCCCCCEEEEEEEETTSCCEEEEECC--SCC-SSCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred cCcCCCeeeEEEEccCCEEEEEEeCc--ccC-CCceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEE
Confidence 46679999999999999999999998 443 44579999998865 333344444556677888999999999999999
Q ss_pred EcCCCcCCCCCceEE
Q psy574 719 TNRAGTGPYSRPALL 733 (977)
Q Consensus 719 ~~~~G~g~~S~~~~~ 733 (977)
.|..|.|. |+++.|
T Consensus 79 ~N~~G~s~-S~~v~~ 92 (95)
T d1bqua1 79 ENALGKVT-SDHINF 92 (95)
T ss_dssp EETTEEEE-CCCEEE
T ss_pred EeCCcccc-CCCeec
Confidence 99999987 666655
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.4e-10 Score=101.43 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece-ecCcCeEEEEccCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT-NVPSPILTVTNLTV 474 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~i~~L~p 474 (977)
..+..|..+.+...+.+++.|+|.+|.. .++.+++|.|+|+...... .|..+.. ......+.|.+|.|
T Consensus 6 ~~~~~P~~p~~~~~~~~~i~v~W~pp~~-~~~~~~~Y~i~y~~~~~~~----------~w~~v~~~~~~~~~~~l~~L~p 74 (106)
T d1cd9b2 6 MLQALDIGPDVVSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQLKGA----------NWTLVFHLPSSKDQFELCGLHQ 74 (106)
T ss_dssp EEEECCC-------CCSCEEEEEECCGG-GTTSCEEEEEEEEESSTTC----------CCEEEEEEESCEEEEEECCCCS
T ss_pred CCCCCCCCCeEecCCCCEEEEEEcCccc-CCccceEEEEEEeeccccc----------cceeeecccCCceEEEEeccCC
Confidence 3346667777888889999999999876 5667899999999765544 7887653 44578899999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEee
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLR 503 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~ 503 (977)
++.|.|+|+|.|..|.|.+|.+|..+.++
T Consensus 75 ~t~Y~frVra~~~~g~g~wS~wS~~~~~~ 103 (106)
T d1cd9b2 75 APVYTLQMRCIRSSLPGFWSPWSPGLQLR 103 (106)
T ss_dssp CSCEEEEEEEEESSSCCCCCCCCCCEEEC
T ss_pred CeEEEEEEEEEeCCCCCCCcCCCCCeEec
Confidence 99999999999999999999999988873
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=7.2e-11 Score=102.63 Aligned_cols=82 Identities=17% Similarity=0.393 Sum_probs=64.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee----------cCCCceEEEecCcEEEEcCCCCCCCe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------FENSKRLRLVDGTNLAIQDSRKTDDG 74 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----------~~~~~r~~~~~~g~L~I~~v~~~D~G 74 (977)
|+.+...+.++.+.+|++++|.|.+ .|.|.+.|.|+|++..+. .....+..+. +++|.|.+++.+|+|
T Consensus 1 k~sV~t~~~~v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~tL~I~~v~~~D~G 78 (102)
T d1f97a1 1 KGSVYTAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNG 78 (102)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCE
T ss_pred CCCEEccCCcEEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeeccccccccceeeEEEec-CCEEEEeECCccCCE
Confidence 4566677778999999999999999 789999999998543221 1112333433 578999999999999
Q ss_pred EEEEEEEecCceee
Q psy574 75 RYQCVVKNVAGTRE 88 (977)
Q Consensus 75 ~Y~C~a~n~~g~~~ 88 (977)
.|+|.|.|..|...
T Consensus 79 ~Y~C~a~n~~g~~~ 92 (102)
T d1f97a1 79 EYTCMVSEEGGQNY 92 (102)
T ss_dssp EEEEEEEETTSSSE
T ss_pred EEEEEEEECCCCEE
Confidence 99999999988744
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=5.9e-11 Score=103.07 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=58.2
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCC-CCCeeeeEEEEEEEecC-CcceEE--EEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVG-THNGVIRTYQIIVGGGN-NSALIN--MTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~-~~ng~i~~Y~v~~~~~~-~~~~~~--~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
+|.+|++...+++++.|+|++|... ...+....|+|+|+..+ ...... .......+.+.|.+|+|++.|.|+|||.
T Consensus 4 ~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA~ 83 (101)
T d1iarb2 4 APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 83 (101)
T ss_dssp CCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEEEE
T ss_pred cCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEEEE
Confidence 8899999998999999999988422 22345567999998865 222222 3334455788999999999999999999
Q ss_pred cCCCcCCCCCc
Q psy574 720 NRAGTGPYSRP 730 (977)
Q Consensus 720 ~~~G~g~~S~~ 730 (977)
|.+|.|++|+.
T Consensus 84 ~~~g~g~wSew 94 (101)
T d1iarb2 84 AQAYNTTWSEW 94 (101)
T ss_dssp CGGGTCCCCCC
T ss_pred cCCCCCCCcCC
Confidence 99998876653
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.6e-11 Score=107.42 Aligned_cols=91 Identities=20% Similarity=0.338 Sum_probs=67.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE--------ecCcEEEEcCCCCCCCeEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--------VDGTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~--------~~~g~L~I~~v~~~D~G~Y~ 77 (977)
|.+...+....+.+|+.++|.|.+..|.|.+.+.|+|||..+......+... ...+.|.|.+++.+|+|.|+
T Consensus 3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~ 82 (104)
T d1nbqa2 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 82 (104)
T ss_dssp CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEE
T ss_pred CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEE
Confidence 4444445556789999999999986689999999999999885433222111 12357999999999999999
Q ss_pred EEEEecCceee-eEeEEEEE
Q psy574 78 CVVKNVAGTRE-STDAVLRV 96 (977)
Q Consensus 78 C~a~n~~g~~~-s~~~~l~V 96 (977)
|.|.|..|... +..+.|.|
T Consensus 83 C~a~N~~G~~~~s~~v~v~v 102 (104)
T d1nbqa2 83 CEARNGYGTPMTSNAVRMEA 102 (104)
T ss_dssp EEEECSSSCCEECCCBCCEE
T ss_pred EEEEECCCceEEEEEEEEEE
Confidence 99999998754 33344444
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.1e-10 Score=100.07 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=80.3
Q ss_pred CCCCCCCeEEeeC--CCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 398 PGPPTKPTLVNQT--ANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 398 p~~P~~~~v~~~~--~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
|+||.++.+..+. ...+.|+|.+|.. ..+..+..|.|+|+..+.. .|...........++|.+|.|
T Consensus 2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L~p 70 (104)
T d1n26a3 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK-----------TFTTWMVKDLQHHCVIHDAWS 70 (104)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCS-----------CCEEEECGGGCSEEEESSCCT
T ss_pred CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCC-----------ceeeeccccceEEEEECCCCC
Confidence 8899999988764 4579999999864 4677789999999876554 788877777788999999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
++.|.|+|+|.|..|.|.+|.++..+..
T Consensus 71 ~t~Y~~rVra~n~~g~g~wSewS~~~~~ 98 (104)
T d1n26a3 71 GLRHVVQLRAQEEFGQGEWSEWSPEAMG 98 (104)
T ss_dssp TCCEEEEEEEEETTTBSCCCCCCCCEEE
T ss_pred CCEEEEEEEEEeCCCccCCcCCcCCEEe
Confidence 9999999999999999999998887755
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.1e-10 Score=101.54 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=68.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------------CceEEeccceEEEccCccCCCeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------------DRMSVLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------------~~~~~~~~~~L~I~~v~~~D~G~Y 166 (977)
+|.+...+.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+.. .......+++|.|.+++.+|+|.|
T Consensus 1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y 80 (102)
T d1f97a1 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80 (102)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence 35667777888999999999999999999999999997543211 111122456899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy574 167 VCEAENAVGKISASATLTV 185 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V 185 (977)
+|.|.|..|.....+.|.|
T Consensus 81 ~C~a~n~~g~~~~~~~v~v 99 (102)
T d1f97a1 81 TCMVSEEGGQNYGEVSIHL 99 (102)
T ss_dssp EEEEEETTSSSEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEE
Confidence 9999999998666655554
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=2.1e-11 Score=109.68 Aligned_cols=90 Identities=20% Similarity=0.161 Sum_probs=71.3
Q ss_pred EEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCC---CCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 549 LTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDP---PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~---~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
.+.+..++.++|.|+|++| ++..+.+|.|+|+.... ...|.... ....++++|.+|+|++.|.|+|+|+|.
T Consensus 21 ~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~---~~~~~~~~v~~L~p~t~Y~frV~A~n~ 97 (120)
T d1wfua_ 21 PPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY---TGYATRHVVEGLEPRTLYKFRLKVTSP 97 (120)
T ss_dssp CCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEE---EESCSEEEEESCCTTCEEEEEEEEECS
T ss_pred CCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeec---cccccEEeCCCCCCCcEeeEEEEEEeC
Confidence 4567778899999999988 34568888888875432 33443332 245688999999999999999999999
Q ss_pred ceeCCCCCceEEeccCCCC
Q psy574 623 SVDGKPSNLRAVRTLECEP 641 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P 641 (977)
.|.|++|..+.++|....|
T Consensus 98 ~G~s~~S~~~~~~T~~~~p 116 (120)
T d1wfua_ 98 SGEYEYSPVVSVATTRESG 116 (120)
T ss_dssp SSCEEECCCEEEECCCCCC
T ss_pred CcEeCCCCCEEEEeCCCCc
Confidence 9999999999999987654
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.5e-11 Score=105.39 Aligned_cols=89 Identities=17% Similarity=0.394 Sum_probs=67.8
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEecCcEEEEcCCCCCCCe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLVDGTNLAIQDSRKTDDG 74 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~~~g~L~I~~v~~~D~G 74 (977)
...+...+.++.+.+|++++|.|.+ .|.|.|.|.|+|++..+.. ....+.... +++|.|.+++.+|+|
T Consensus 4 ~v~V~~~~~~v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~I~~v~~~D~G 81 (105)
T d1nbqa1 4 SVTVHSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTG 81 (105)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCS
T ss_pred ceEEECCCCeEEEeCCCeEEEEEEe-CCCCCCeeEEEeeeeceeeeeeccceeeccccceeeec-CceEEEeccccccee
Confidence 4456667778999999999999999 8999999999997654421 112233332 568999999999999
Q ss_pred EEEEEEEecCceeeeEeEEEEE
Q psy574 75 RYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 75 ~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
.|+|.|.|..|... ..+.|+|
T Consensus 82 ~Y~C~a~n~~G~~~-~~~~v~v 102 (105)
T d1nbqa1 82 TYTCMVSEEGGNSY-GEVKVKL 102 (105)
T ss_dssp EEEEEEEETTSSCE-ECCEEEC
T ss_pred eEEEEEEECCCCEE-EEEEEEE
Confidence 99999999998754 3344443
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=9.3e-11 Score=104.53 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=73.0
Q ss_pred CCCceeEEEE--ecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEE---EEecCCcCeEEecCCCCCceEEEEEE
Q psy574 643 GVPQLTDPVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN---MTVSASTPTLLLTNLSAGIRYSVSLA 717 (977)
Q Consensus 643 ~~P~~v~~~~--~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~V~ 717 (977)
.||.++++.. .+.++|.|+|++| ...+|.+.+|+|+|+......... ....+..+++.|.+|.+++.|.|+|+
T Consensus 6 ~pP~~~~v~~~~~~~~si~v~W~~p--~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~ 83 (115)
T d1bqua2 6 NPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR 83 (115)
T ss_dssp CCCEEEEEECC--CCSCEEEEEECC--GGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEE
T ss_pred CCCCCCEEEEeccCCCEEEEEEeec--cccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEEE
Confidence 3788888764 4568899999998 677889999999999865322222 12345678999999999999999999
Q ss_pred EEcCCCcCCCC---CceEEeecCC
Q psy574 718 ATNRAGTGPYS---RPALLSLTSG 738 (977)
Q Consensus 718 A~~~~G~g~~S---~~~~~~t~~~ 738 (977)
|+|..|.|.+| .++.++|...
T Consensus 84 a~~~~G~g~~S~~S~~~~~~T~~~ 107 (115)
T d1bqua2 84 CMKEDGKGYWSDWSEEASGITYED 107 (115)
T ss_dssp EEETTSCSCCCCCCCCEEEEECCC
T ss_pred EEeCCCccCCcCCcCCEEEECCCC
Confidence 99999998654 6777877654
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.9e-10 Score=98.43 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=68.3
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..++.++|.|+|++|.+..+.+|+|+|+..+. ..|.... ....+.++++|.+|.|++.|.|+|+|.|..|.|
T Consensus 9 P~~l~v~~~t~~si~l~W~~p~~~~i~~Y~v~~~~~~~-~~~~~~~-~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g~s 86 (95)
T d2fnba_ 9 LTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGE-GIPIFED-FVDSSVGYYTVTGLEPGIDYDISVITLINGGES 86 (95)
T ss_dssp CTTCEEECCCSSCEEEECCCCCCSSCCEEEEEEEEETS-CCEEEEE-ECCSSCSEEEECCCCTTSEEEEEEEEEETTEEC
T ss_pred CCCeEEEEEcCCEEEEEEEecCCceEEeEEEEEEEeec-cceEEEE-EeCCCCeEEEEecccCCEEEEEEEEEEeCCcEe
Confidence 35688999999999999999977789999999998874 3333332 234678899999999999999999999999998
Q ss_pred CCCC
Q psy574 627 KPSN 630 (977)
Q Consensus 627 ~~s~ 630 (977)
.++.
T Consensus 87 ~p~~ 90 (95)
T d2fnba_ 87 APTT 90 (95)
T ss_dssp CCCE
T ss_pred CCEE
Confidence 7663
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=3.2e-10 Score=96.43 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
.|.+|.++++...+.++|.|+|.++....++.+..|.|++...+. .|... ....+++|.+|.|++
T Consensus 2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~------------~~~~~---~~~t~~~i~~L~p~t 66 (94)
T d1x5aa1 2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDE------------EWHQM---VLEPRVLLTKLQPDT 66 (94)
T ss_dssp CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSC------------EEEEE---ESSSEEEEESCCSSC
T ss_pred cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCc------------eEEEe---eccCEEEECCCCCCC
Confidence 478899999999999999999999865566777899999986543 33322 346889999999999
Q ss_pred eEEEEEEEEcCCCCCCCCCCCc
Q psy574 477 TYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
.|.|+|+|.|..|.|.+|....
T Consensus 67 ~Y~~rV~A~n~~G~g~~S~~~~ 88 (94)
T d1x5aa1 67 TYIVRVRTLTPLGPGPFSPDHE 88 (94)
T ss_dssp EEEEEEEEECSSSCCCCCCCEE
T ss_pred EEEEEEEEEcCCcCcCCCCCEE
Confidence 9999999999999998886433
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6.6e-11 Score=103.71 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
...|++|.++.+..++.+++.|+|.+|.. .++.+.+|.|+|+..+... .|..........++.|.+|.|
T Consensus 8 e~vP~~p~~l~~~~~~~~sv~l~W~~P~~-~ng~i~~Y~i~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p 76 (106)
T d1wfna1 8 EDVPGPVGHLSFSEILDTSLKVSWQEPGE-KNGILTGYRISWEEYNRTN----------TRVTHYLPNVTLEYRVTGLTA 76 (106)
T ss_dssp CCSCCCCSCCEEESCCSSEEEEECCCCTT-CCSCCCEEEEEEEESSCGG----------GCCCEEECSSCCEEEEESCCT
T ss_pred CCCCcCCCCcEEEEecCCEEEEEEECCCC-CCCcEEeEEEEEEECCCCc----------ceEEEecCCCeeEEEEccCCC
Confidence 35789999999999999999999998877 5678999999998765442 444444455677899999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCC
Q psy574 475 GLTYTFLVRALNSHGLSAPSP 495 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~ 495 (977)
++.|.|+|+|.|..|.|++|.
T Consensus 77 ~t~Y~~~V~A~n~~G~g~~s~ 97 (106)
T d1wfna1 77 LTTYTIEVAAMTSKGQGQVSA 97 (106)
T ss_dssp TCEEEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEEEEECCCCCcCCcC
Confidence 999999999999999987764
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=4.2e-11 Score=106.86 Aligned_cols=97 Identities=25% Similarity=0.189 Sum_probs=75.1
Q ss_pred EEEEee--EeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEE-eecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 548 ELTEVK--PMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTV-LHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 548 ~~l~~~--~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
.++.+. ..++++|.|+|++| .++.+.+|.|+|+.... ..|..... ......+++.|.+|.+++.|.|+|+|.|.
T Consensus 9 ~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~a~~~ 87 (115)
T d1bqua2 9 HNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA-STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 87 (115)
T ss_dssp EEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTC-SSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEET
T ss_pred CCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeee-eeeeccccccccccccEEeeCCCccCcEEEEEEEEEeC
Confidence 455554 56788999999998 67789999999998774 44433222 22356689999999999999999999999
Q ss_pred ceeCCCC---CceEEeccCCCCCCCC
Q psy574 623 SVDGKPS---NLRAVRTLECEPSGVP 645 (977)
Q Consensus 623 ~g~g~~s---~~~~~~T~~~~P~~~P 645 (977)
.|.|.+| ..+.++|.+++|..+|
T Consensus 88 ~G~g~~S~~S~~~~~~T~~~~P~~~P 113 (115)
T d1bqua2 88 DGKGYWSDWSEEASGITYEDRPSKEP 113 (115)
T ss_dssp TSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred CCccCCcCCcCCEEEECCCCCCCCCc
Confidence 9987654 5788999999887665
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.1e-10 Score=102.23 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=68.6
Q ss_pred CCCceEEeCCCeEEEEE---EecccCceEEEEEECCeeCCCCc-eEEe----------ccceEEEccCccCCCeEEEEEE
Q psy574 105 GPKDTTVSASSIIVFEC---SVGGDAVLTVHWKRLGSAMPEDR-MSVL----------PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C---~v~g~p~~~i~W~k~~~~l~~~~-~~~~----------~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
.|.+..+..|....+.| .+.|+|.|.+.|++++..+..+. .... ....|.|.++..+|+|.|+|.|
T Consensus 3 ~p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A 82 (107)
T d1he7a_ 3 MPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 82 (107)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEE
T ss_pred CCCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEE
Confidence 35566666666666555 78999999999999999986533 2221 1146999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeeCCe
Q psy574 171 ENAVGKISASATLTVQMAPI 190 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~~p~ 190 (977)
.|..|..++.+.|.|..+|.
T Consensus 83 ~N~~G~~~~~i~v~v~~~P~ 102 (107)
T d1he7a_ 83 ANPFGQASASIMAAFMDNPF 102 (107)
T ss_dssp EETTEEEEEEEEECCCSCTT
T ss_pred EeCCCEEEEEEEEEEEcCCC
Confidence 99999999999999998873
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.2e-10 Score=100.46 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=70.2
Q ss_pred EEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 550 TEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
+.+..+++++|+|+|++| ++..+.+|.|+|+.......|.... ....+.+.+.+|+|++.|.|+|+|.|..|.|
T Consensus 18 ~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~s 94 (107)
T d2crma1 18 SVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY---SGATREHLCDRLNPGCFYRLRVYCISDGGQS 94 (107)
T ss_dssp EEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEE---CSSCSEEEECSCCTTSCEEEEEEEEETTEEC
T ss_pred EEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEee---cCCccEEEEeccCCCCEEEEEEEEECCCcCc
Confidence 445567889999999988 3457899999999887655554433 2567889999999999999999999999999
Q ss_pred CCCCceEEecc
Q psy574 627 KPSNLRAVRTL 637 (977)
Q Consensus 627 ~~s~~~~~~T~ 637 (977)
++|+.+.++|.
T Consensus 95 ~~S~~v~v~Tp 105 (107)
T d2crma1 95 AVSESLLVQTP 105 (107)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCcEEEECC
Confidence 99998888774
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-10 Score=98.52 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=57.9
Q ss_pred eEEeCCCcEEEEE------ECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 15 QRVAAGDTALLEC------GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 15 ~~v~~G~~v~L~C------~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
+.+.+|+...|.| .+ .++|.|.|.|+|||+.|.. ...++.. .++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kdg~~l~~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKDCKPLLL-DNIHFSG-VKDRLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCB-TTTBCCCCEEEETTEECCC-CSSSEEE-ETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred EEEecCCCEEEEcCCcccccc-CCCCCCEEEEEECCccccC-CCcEEEe-cCCEEEEcccccccCcEEEEEEEECcCC
Confidence 6789999999999 34 7899999999999999954 3334444 4788999999999999999999987653
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=5.2e-10 Score=95.95 Aligned_cols=92 Identities=22% Similarity=0.355 Sum_probs=71.0
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecCCC-CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEE
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL 269 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~ 269 (977)
+...|.+..+..|+++.|.|.+.|.|+ +.+.|++++..... ....++.+.....+.+.|.|.+++.+|+|.|+ |.
T Consensus 3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~-C~ 78 (97)
T d1epfa1 3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS---PNQQRISVVWNDDDSSTLTIYNANIDDAGIYK-CV 78 (97)
T ss_dssp EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC---CBSSSEEEEEEETTEEEEEECSCCGGGCEEEE-EE
T ss_pred EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeee---eccccEEEEeecCcceEEEcccCchhhceEEE-EE
Confidence 445678889999999999999999985 69999995543322 23455665554456679999999999999999 99
Q ss_pred EEcCCCce-eEEEEEEEE
Q psy574 270 GVNAAGSD-LARASLTVS 286 (977)
Q Consensus 270 a~n~~g~~-~~~~~l~V~ 286 (977)
|.|..|.. ..++.|.|.
T Consensus 79 a~N~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 79 VTAEDGTQSEATVNVKIF 96 (97)
T ss_dssp EEETTTEEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEEEE
Confidence 99999975 355666664
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=6.8e-10 Score=93.76 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=70.6
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..++.+++.|+|++|. +.+.+|.|+|+..+....+....+ ..+.++++|.+|+|++.|.|+|+|.|..|.|
T Consensus 5 P~~l~v~~~s~~s~~l~W~~p~-~~~~~y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s 81 (90)
T d1tena_ 5 PSQIEVKDVTDTTALITWFKPL-AEIDGIELTYGIKDVPGDRTTIDL--TEDENQYSIGNLKPDTEYEVSLISRRGDMSS 81 (90)
T ss_dssp CEEEEEESCCSSCEEEEEECCS-SCCSEEEEEEEETTCTTCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred CCCcEEEEecCCEEEEEEEeCc-eEeccEEEEEEEcCCCceeEEEEe--cCCcceeeEeeecCCCEEEEEEEEEeCCCEe
Confidence 3789999999999999999874 468999999998876555544443 3688899999999999999999999999998
Q ss_pred CCCCceEEec
Q psy574 627 KPSNLRAVRT 636 (977)
Q Consensus 627 ~~s~~~~~~T 636 (977)
.++. ..|.|
T Consensus 82 ~~~~-~~~~T 90 (90)
T d1tena_ 82 NPAK-ETFTT 90 (90)
T ss_dssp CCEE-EEEEC
T ss_pred CCEE-EEEEC
Confidence 7653 44544
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.3e-10 Score=101.41 Aligned_cols=78 Identities=26% Similarity=0.406 Sum_probs=61.3
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-----cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEE
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-----TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 95 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~ 95 (977)
....|.|.+ .|.|.|.|.|+|||+.|......++....+ +.|.|.+++.+|+|.|+|+|.|..|.. +..+.|.
T Consensus 18 ~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 95 (105)
T d1wwca_ 18 LEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGH 95 (105)
T ss_dssp CEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred EEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEEE
Confidence 345577788 899999999999999996555444444332 359999999999999999999998864 4667888
Q ss_pred EEcCC
Q psy574 96 VLVKP 100 (977)
Q Consensus 96 V~~~P 100 (977)
|..+|
T Consensus 96 V~~~P 100 (105)
T d1wwca_ 96 FLKEP 100 (105)
T ss_dssp CSCCC
T ss_pred EEeCC
Confidence 77666
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.3e-10 Score=99.60 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=70.6
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCC----CCCceEEEEeecCccceEEECCCCCCcEEEEEEEE
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDP----PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVP 619 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~----~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 619 (977)
+|.++++..+++++|.|+|++| .++.+.+|.|+|+.... ...|...... .....+++|.+|+|++.|.|+|+|
T Consensus 5 ~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A 83 (103)
T d1qg3a2 5 EPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD-NPKNRMLLIENLRESQPYRYTVKA 83 (103)
T ss_dssp CCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEEC-CTTCCEEEECCCCTTCCEEEEEEE
T ss_pred cCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEec-CCCceEEEEeecCCCCEEEEEEEE
Confidence 3467999999999999999999 67899999999998765 2234433333 356778999999999999999999
Q ss_pred eecceeCCCCCce
Q psy574 620 FFGSVDGKPSNLR 632 (977)
Q Consensus 620 ~n~~g~g~~s~~~ 632 (977)
+|..|.|+.+..+
T Consensus 84 ~n~~G~g~~s~~~ 96 (103)
T d1qg3a2 84 RNGAGWGPEREAI 96 (103)
T ss_dssp EETTEECCCEEEE
T ss_pred EcCCccCCCcccc
Confidence 9999999877643
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=4.5e-10 Score=95.60 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred EEEEEeeEeCCC-eEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 547 IELTEVKPMTST-SVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 547 ~~~l~~~~~~~t-sv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+.++++.....+ +|.|+|++|.+..+++|+|+|+..+. ..+.........+.++++|.+|+|++.|.|+|.|.+..|.
T Consensus 5 P~~l~v~~~~~ts~i~v~W~~p~~~~i~~Y~v~y~~~~~-~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~ 83 (94)
T d1fnfa1 5 PTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNG-QQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKE 83 (94)
T ss_dssp CEEEEEEECSSSSCEEEEEECCSCSSCCEEEEEEEETTT-CSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEETTEE
T ss_pred CcCcEEEEecCCCEEEEEeeCCCCCCeeEEEEEEEEecc-cCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCE
Confidence 478999988654 59999999977679999999998774 3333344444567889999999999999999999999998
Q ss_pred CCC
Q psy574 626 GKP 628 (977)
Q Consensus 626 g~~ 628 (977)
|.+
T Consensus 84 s~p 86 (94)
T d1fnfa1 84 SVP 86 (94)
T ss_dssp CCC
T ss_pred eCC
Confidence 744
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=99.05 E-value=4.1e-10 Score=94.52 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=68.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
|.+|.+|++..++.++|.|+|++| .++.+.+|.|++... .... ...+++++.+|.|++.|.|+|+|+|.
T Consensus 4 P~~P~~l~~~~~~~~sv~lsW~~p~~~~~i~~Y~i~~~~~------~~~~----~~~t~~~~~~L~p~t~Y~~~V~A~n~ 73 (88)
T d1k85a_ 4 PTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGTA------LATT----VTGTTATISGLAADTSYTFTVKAKDA 73 (88)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECCSCCSSEEEEEEEESSS------EEEE----ESSSEEEECCCCSSCEEEEEEEEEET
T ss_pred cCCCCCcEEEEecCCEEEEEEeCCCCCCCEEEEEEEccce------EEEe----cCCCEEEECCCCCCCEEEEEEEEEEC
Confidence 345689999999999999999998 556788999986321 1111 34578999999999999999999999
Q ss_pred ce-eCCCCCceEEec
Q psy574 623 SV-DGKPSNLRAVRT 636 (977)
Q Consensus 623 ~g-~g~~s~~~~~~T 636 (977)
.| .|.+|..+.++|
T Consensus 74 ~G~~s~~S~~v~vtT 88 (88)
T d1k85a_ 74 AGNVSAASNAVSVKT 88 (88)
T ss_dssp TTEECCCCCCEEEEC
T ss_pred CCCcCCCCcCEEEEC
Confidence 99 689999888876
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.7e-10 Score=101.63 Aligned_cols=85 Identities=24% Similarity=0.246 Sum_probs=66.6
Q ss_pred eeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 552 VKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
+...+.++|.|+|+++ .++.+.+|+|+|+..+ ...+.... ....+.+.+|.|++.|.|+|+|+|..|.|+
T Consensus 26 ~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~-~~~~~~~~-----~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~ 99 (117)
T d1wj3a_ 26 VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS-QNNVQVLN-----TNKTSAELVLPIKEDYIIEVKATTDGGDGT 99 (117)
T ss_dssp BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESS-CSSCEEEE-----ESSSEEEEECCCSSCEEEEEEEEESSCCCC
T ss_pred EEeecCCEEEEEEeecccccCCCceeEEEEEEEecC-CCceeeee-----ceeeEEEeeccCCcEEEEEEEEEcCCccCC
Confidence 4456789999999985 5578999999999876 34444332 235678889999999999999999999999
Q ss_pred CCCceEE-eccCCCCC
Q psy574 628 PSNLRAV-RTLECEPS 642 (977)
Q Consensus 628 ~s~~~~~-~T~~~~P~ 642 (977)
+|+.+.+ ++.+++|+
T Consensus 100 ~S~~v~v~~~~~~~Ps 115 (117)
T d1wj3a_ 100 SSEQIRIPRITSSGPS 115 (117)
T ss_dssp BCCCEEECCCCCCCSC
T ss_pred CCCCEEEeccCCCCCC
Confidence 9988776 55555554
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.3e-11 Score=102.91 Aligned_cols=86 Identities=14% Similarity=0.292 Sum_probs=66.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------------CceEEeccceEEEccCccCCCeEEEE
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------------DRMSVLPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------------~~~~~~~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .+.....+++|.|.+++.+|+|.|+|
T Consensus 6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 85 (105)
T d1nbqa1 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC 85 (105)
T ss_dssp EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence 344455677899999999999999999999999998654321 11112235689999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEe
Q psy574 169 EAENAVGKISASATLTVQ 186 (977)
Q Consensus 169 ~a~n~~g~~~~~~~L~V~ 186 (977)
.|.|..|.....+.|.|.
T Consensus 86 ~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 86 MVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp EEEETTSSCEECCEEECC
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 999999987776666553
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=9.3e-10 Score=92.92 Aligned_cols=88 Identities=20% Similarity=0.313 Sum_probs=72.4
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..++.++|.|+|++|. ..+.+|.|+|+.......+....+ ....++++|.+|.|++.|.|+|+|+|..|.|
T Consensus 3 P~~l~~~~v~~~si~l~W~~p~-~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s 79 (90)
T d1fnha1 3 PTDLKFTQVTPTSLSAQWTPPN-VQLTGYRVRVTPKEKTGPMKEINL--APDSSSVVVSGLMVATKYEVSVYALKDTLTS 79 (90)
T ss_dssp CEEEEEEEECSSCEEEEEECCS-SCCSEEEEEEEESSSCSCCCEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred CCCEEEEEecCCEEEEEEEccc-eeccceEEEEEeeeCCCceEEEEe--CCCCeEEEEecccCceEEEEEEEEEeCCCCc
Confidence 3789999999999999999873 458899999998876554444433 3677899999999999999999999999999
Q ss_pred CCCCceEEeccC
Q psy574 627 KPSNLRAVRTLE 638 (977)
Q Consensus 627 ~~s~~~~~~T~~ 638 (977)
.++. ..+.|.|
T Consensus 80 ~~~~-~~~~T~e 90 (90)
T d1fnha1 80 RPAQ-GVVTTLE 90 (90)
T ss_dssp CCEE-EEEECCC
T ss_pred CCEe-EEEEcCC
Confidence 8775 4566654
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5e-10 Score=94.80 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=66.1
Q ss_pred EEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC
Q psy574 549 LTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP 628 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~ 628 (977)
+|++..++++++.|+|++|. +.+.+|.|+|+..+....+....+ ..+.+++.|.+|.|++.|.|+|.|.+..|.|+.
T Consensus 2 nl~v~~~t~~sv~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~--~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~ 78 (91)
T d1fnaa_ 2 DLEVVAATPTSLLISWDAPA-VTVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 78 (91)
T ss_dssp CCEEEEECSSCEEEECCCCS-SCCSEEEEEEEETTCCSCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEECTTCCSSC
T ss_pred CCEEEEeCCCEEEEEEEccc-eEecEEEEEEEcCCCCceeEEEEe--CCCccEEEeCCCCCCCEEEEEEEEEeCCccCCC
Confidence 68899999999999999884 358899999998875444444443 367789999999999999999999999999876
Q ss_pred CC
Q psy574 629 SN 630 (977)
Q Consensus 629 s~ 630 (977)
+.
T Consensus 79 ~s 80 (91)
T d1fnaa_ 79 SS 80 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.3e-10 Score=99.25 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=66.7
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec------CcEEEEcCCCCCCCeEEEEEEEecCceeeeEe
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD------GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~------~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 91 (977)
..++...|.|.+ .|.|.|.|.|+|||..|......++.... .+.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 14 ~~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~ 91 (103)
T d1wwbx_ 14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQ 91 (103)
T ss_dssp CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEE
T ss_pred ccceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEE
Confidence 467888899999 89999999999999999654433333321 1369999999999999999999999985 566
Q ss_pred EEEEEEcCCeE
Q psy574 92 AVLRVLVKPYI 102 (977)
Q Consensus 92 ~~l~V~~~P~~ 102 (977)
+.|.|..+|.+
T Consensus 92 ~~v~V~~~P~i 102 (103)
T d1wwbx_ 92 ISAHFMGWPGI 102 (103)
T ss_dssp EEECCSCCCCC
T ss_pred EEEEEEeCCCC
Confidence 78888777753
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=9.1e-10 Score=92.73 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred EEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
.+|++..++.+++.|+|++|. +.+.+|+|+|+..+.........+ ..+.+++.|.+|+|++.|.|+|+|.|..|.|+
T Consensus 5 ~~l~v~~vt~~sv~l~W~~p~-~~~~~Y~i~~~~~~~~~~~~~~~v--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~ 81 (89)
T d1fnfa3 5 TGIDFSDITANSFTVHWIAPR-ATITGYRIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESP 81 (89)
T ss_dssp EEEEEESCCSSEEEEEEECCS-SCCSEEEEEEECSCCSSCCEEEEE--ETTCCEEEEESCCTTCEEEEEEEEEETTEECC
T ss_pred cCCEEEEecCCEEEEEEEeCC-CEEeeEEEEEEECCCCCceEEEEE--CCCccEEEECCCcccCEEEEEEEEEcCCcCcC
Confidence 789999999999999999984 458999999998875444433333 36788999999999999999999999999875
Q ss_pred CC
Q psy574 628 PS 629 (977)
Q Consensus 628 ~s 629 (977)
+.
T Consensus 82 p~ 83 (89)
T d1fnfa3 82 LL 83 (89)
T ss_dssp CE
T ss_pred CE
Confidence 53
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.2e-10 Score=98.58 Aligned_cols=76 Identities=16% Similarity=0.321 Sum_probs=62.4
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+..+.+|+++.|.|.+.| |.+.+.|++++..+.. .++.+..+++|.|.+++.+|+|.|+|.|.|..+..+....|.
T Consensus 6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~ 83 (92)
T d1olza1 6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 83 (92)
T ss_dssp EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEE
Confidence 457899999999999988 6679999999988754 345555778999999999999999999999888654444443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=1.5e-10 Score=102.10 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=61.5
Q ss_pred ceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCce-----------EE-eccceEEEccCccCCCeEEEEEEEeCC
Q psy574 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRM-----------SV-LPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~-----------~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
...+.+|+++.|.|.+ .|+|.+.|.|+|++..+..... .. .....|.|.+++.+|+|.|+|.|.|..
T Consensus 11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~ 90 (110)
T d1f97a2 11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 90 (110)
T ss_dssp CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence 3468899999999998 5899999999999987643211 11 134579999999999999999999999
Q ss_pred eeEEE--EEEEEEe
Q psy574 175 GKISA--SATLTVQ 186 (977)
Q Consensus 175 g~~~~--~~~L~V~ 186 (977)
|.... .+.|.|.
T Consensus 91 G~~~~s~~v~l~V~ 104 (110)
T d1f97a2 91 GTAMRSEAAHMDAV 104 (110)
T ss_dssp SCCEECCCEEEEEE
T ss_pred CcEEEEEEEEEEEE
Confidence 97544 5666665
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=6e-10 Score=96.62 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.+|++..++++++.|+|++|. +.+.+|.|+|+..+. ..+. .. ...+.+++.|.+|.|++.|.|+|+|++..|.|
T Consensus 4 P~~l~~~~~t~~si~l~W~~p~-~~i~~Y~v~~~~~~~-~~~~-~~--~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~s 78 (102)
T d2cuha1 4 PTQLRALNLTEGFAVLHWKPPQ-NPVDTYDIQVTAPGA-PPLQ-AE--TPGSAVDYPLHDLVLHTNYTATVRGLRGPNLT 78 (102)
T ss_dssp CEEEECCCCSSSCEEEEEECCS-SCCSEEEEEEECSSS-CCEE-EE--EETTCSEEEECSCCSSSEEEEEEEEEETTEEC
T ss_pred CCccEEEEeCCCEEEEEEEeee-ccceeeEEEEEeccc-ccee-ee--eeeeeeeEEEccEEeeEEEEEEEEEEeCCCCc
Confidence 4789999999999999999874 458999999987663 3332 22 23677899999999999999999999999988
Q ss_pred CCCCceEEeccCCCCCCCCceeEEE
Q psy574 627 KPSNLRAVRTLECEPSGVPQLTDPV 651 (977)
Q Consensus 627 ~~s~~~~~~T~~~~P~~~P~~v~~~ 651 (977)
.++. +.++|..+ +|.++++.
T Consensus 79 ~~~~-~~~~T~~~----~P~~l~~~ 98 (102)
T d2cuha1 79 SPAS-ITFTTGLE----APRDLEAK 98 (102)
T ss_dssp CCEE-EEEESCCC----CTTTSSSC
T ss_pred CCEE-EEEECCCC----CCCCCEee
Confidence 6654 67777654 44565543
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=4.4e-12 Score=110.36 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=75.3
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|..+++..+++++|.|+|++| .++.|.+|+|+|+..+....+.............+.+.+|+|++ |.|+|+|+|..|
T Consensus 8 P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~A~n~~G 86 (102)
T d2dtge1 8 VGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAG 86 (102)
T ss_dssp CCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCCEEETTB
T ss_pred CCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEEEEcCCc
Confidence 345788889999999999998 77889999999998775333333333334566789999999975 999999999999
Q ss_pred eCCCCCceEEeccCC
Q psy574 625 DGKPSNLRAVRTLEC 639 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~ 639 (977)
.|++|+.+.|.|.+.
T Consensus 87 ~g~~S~~v~f~~~e~ 101 (102)
T d2dtge1 87 NGSWTEPTYFYVTDY 101 (102)
T ss_dssp CCCCCCCCEECCCCC
T ss_pred cCCCCCCEEEEccCC
Confidence 999999999999764
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=8.2e-11 Score=101.93 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=69.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.+++.+.|....+.+|+.++|.|.+..++|.+ .+.|+||++.+...... .......|.|..++.+|+|.|+|+|.|
T Consensus 4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~--~~~~~s~l~i~~~~~dd~g~ytC~A~n 81 (103)
T d1iama1 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRRDHHGAQFSCRTEL 81 (103)
T ss_dssp CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--TTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc--cccceEEEEEeeehhHCCCEEEEEEEe
Confidence 46788888889999999999999996667765 58899999999532111 111134699999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCC
Q psy574 83 VAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P 100 (977)
..|... ..+.+.+..++
T Consensus 82 ~~g~~~-~~~~~~~s~p~ 98 (103)
T d1iama1 82 DLRPQG-LELFENTSAPY 98 (103)
T ss_dssp ECGGGT-SCEEEEECCCE
T ss_pred CCCCcc-CeEeeeEcCCC
Confidence 987643 34455555443
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.02 E-value=2e-10 Score=100.14 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC---CceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE---DRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~---~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
+..+.+.+|+++.|.|.+ .|.|.+.|.|+|++..+.. .+... ..+++|.|.+++.+|+|.|+|.|.|..|..++.
T Consensus 11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~ 90 (105)
T d1cs6a2 11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 90 (105)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence 456789999999999998 7899999999999876532 23333 356789999999999999999999988876554
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.8e-10 Score=101.72 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=72.0
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCC------ceEEE-------EeecCccceEEECCCC
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPAS------VAMLT-------VLHAGEASGFLVTGLA 608 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~------~~~~~-------~~~~~~~~~~~i~~L~ 608 (977)
|.+|.++++.. +.++|.|+|++| .++.|.+|.|+|+....... +.... .........+.|.+|+
T Consensus 8 P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 86 (123)
T d1wfta_ 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYT 86 (123)
T ss_dssp CCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCBCS
T ss_pred CcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcCCC
Confidence 34557888865 689999999998 77899999999998775211 11111 0112345677889999
Q ss_pred CCcEEEEEEEEeecceeCCCCCceEEeccC
Q psy574 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 609 p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~ 638 (977)
|++.|.|+|+|.|..|.|++|+...++|..
T Consensus 87 p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~ 116 (123)
T d1wfta_ 87 SRPAIVFRISAKNEKGYGPATQIRWLQGNS 116 (123)
T ss_dssp SSCEEEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred CCCEEEEEEEEecCCcCCCCCCcEEEEecC
Confidence 999999999999999999999988888854
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=4.8e-11 Score=104.25 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCc-eE----------EeccceEEEccCccCCCeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR-MS----------VLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~-~~----------~~~~~~L~I~~v~~~D~G~Y 166 (977)
||.+........+.+|++++|.|.+ .|+|.+.+.|+|++..+.... .. ......|.|.+++.+|+|.|
T Consensus 2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y 81 (104)
T d1nbqa2 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 81 (104)
T ss_dssp CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence 5666666666788999999999998 689999999999998874321 11 01235799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy574 167 VCEAENAVGKISASATLTV 185 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V 185 (977)
+|.|.|..|....++.|.|
T Consensus 82 ~C~a~N~~G~~~~s~~v~v 100 (104)
T d1nbqa2 82 SCEARNGYGTPMTSNAVRM 100 (104)
T ss_dssp EEEEECSSSCCEECCCBCC
T ss_pred EEEEEECCCceEEEEEEEE
Confidence 9999999998665544433
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.4e-10 Score=104.33 Aligned_cols=99 Identities=15% Similarity=0.301 Sum_probs=75.9
Q ss_pred eCCeEE-----ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCC------------------------Ccc
Q psy574 187 MAPIVR-----ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG------------------------DRV 237 (977)
Q Consensus 187 ~~p~~~-----~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~------------------------~~~ 237 (977)
.||.+. ..|..+.+.+|+.++|.|.+.|.|.|.+.|++++..+..... ...
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence 467654 345677899999999999999999999999998755321110 012
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.++.+... .+.+.|.|.++..+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 83 ~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~l~V~d 130 (130)
T d1gxea_ 83 GRVRVETT-KDRSIFTVEGAEKEDEGVYT-VTVKNPVGEDQVNLTVKVID 130 (130)
T ss_dssp SSCEEEEE-TTEEEEECSCCCTTTCEEEE-EEEECSSCEEEEEEEEEECC
T ss_pred ceEEEEEC-CCEEEEEECcCChhcCEEEE-EEEEECCCEEEEEEEEEEEC
Confidence 34444433 35578999999999999999 99999999999998888853
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.8e-10 Score=97.73 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---------CcceEEEEecCCcCeEEecCCCCC
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---------NSALINMTVSASTPTLLLTNLSAG 709 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---------~~~~~~~~~~~~~~~~~l~~L~p~ 709 (977)
++|+ +|.+|++...+.+++.|+|++| +|.+.+|.|+|+..+ ........+.+..++++|.+|+|+
T Consensus 2 g~Pp-~~~~l~v~~~t~~sv~v~W~pp-----~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~ 75 (101)
T d2cuia1 2 GSRP-RLSQLSVTDVTTSSLRLNWEAP-----PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSG 75 (101)
T ss_dssp CCCC-CCCCCEEESCCSSCEEEECCCC-----TTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTT
T ss_pred CCcc-CCCCcEEEEECCCEEEEEEEec-----cccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcC
Confidence 3555 7789999999999999999887 256889999988743 123344566788999999999999
Q ss_pred ceEEEEEEEEcCCCcCCCCC
Q psy574 710 IRYSVSLAATNRAGTGPYSR 729 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~ 729 (977)
+.|.|+|+|++..|.|..+.
T Consensus 76 t~Y~~~V~a~~~~g~g~~~~ 95 (101)
T d2cuia1 76 TLYSLTLYGLRGPHKADSIQ 95 (101)
T ss_dssp CEEEEEEEEECSSSEEEEEE
T ss_pred CEEEEEEEEEeCCcEeCCeE
Confidence 99999999999999988653
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.1e-11 Score=107.67 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=74.7
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec----C---cEEEEcCCCCCC-C
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD----G---TNLAIQDSRKTD-D 73 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~----~---g~L~I~~v~~~D-~ 73 (977)
-|..|.+...+..+.+.+|+.+.|.|.+..+.|.+.+.|++++..+......++.+.. + ..|.|.+++.+| +
T Consensus 3 ~V~~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~ 82 (115)
T d2crya1 3 TVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 82 (115)
T ss_dssp CCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred EEecCCEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCC
Confidence 3555666667788899999999999999333567789999999998655445554432 2 259999999999 6
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcC
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~ 99 (977)
|.|+|.|.|..|.. +..+.|.|...
T Consensus 83 G~Y~C~A~N~~G~~-~~~~~L~V~~~ 107 (115)
T d2crya1 83 TIYNCTAWNSFGSD-TEIIRLKEQGS 107 (115)
T ss_dssp SCEEEEEECSSCEE-EEEECCCCSCS
T ss_pred eEEEEEEEECCCeE-EEEEEEEEECC
Confidence 99999999999974 56677777643
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=2.4e-09 Score=90.87 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred eEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 546 LIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+|.++.+..++.++++|+|++|. +.+.+|.|+|+..+....+.... ...+.++++|.+|.|++.|.|+|+|.+..|.
T Consensus 6 ~P~~l~v~~v~~~si~v~W~~p~-~~~~~y~i~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~ 82 (93)
T d1tdqa1 6 GPTQILVRDVSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGGKTTFR--LQPPLSQYSVQALRPGSRYEVSISAVRGTNE 82 (93)
T ss_dssp CCEEEEEEEECSSCEEEEEECCS-SCCSEEEEEEEESSSSCCCEEEE--ECTTCSEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred cCCCCEEEEeCCCEEEEEEEccc-cCCCceEEEEEeccCcceeeEEE--eCCCceEEEEeCcccceEEEEEEEEEeCCCC
Confidence 34789999999999999999874 46889999999988644443333 3367789999999999999999999999999
Q ss_pred CCCCCceEEec
Q psy574 626 GKPSNLRAVRT 636 (977)
Q Consensus 626 g~~s~~~~~~T 636 (977)
|.++. ..++|
T Consensus 83 s~~~~-~~~tT 92 (93)
T d1tdqa1 83 SDASS-TQFTT 92 (93)
T ss_dssp CCCEE-EEEEC
T ss_pred cCCEE-EEEEC
Confidence 97654 56665
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.00 E-value=1.3e-09 Score=91.37 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.+|++..++.++|.|+|++|. +.+.+|+|+|+..+. .+.. .....+.++++|.+|.|++.|.|+|+|.+..|.|
T Consensus 3 P~~l~v~~~t~~sv~v~W~~p~-~~~~~Y~v~~~~~~~--~~~~--~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s 77 (87)
T d1qr4a1 3 PKDLEVSDPTETTLSLRWRRPV-AKFDRYRLTYVSPSG--KKNE--MEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKS 77 (87)
T ss_dssp CEEEEEESCCSSEEEEEEECCS-SCCSEEEEEEECTTC--CEEE--EEECTTCSEEEEESCCSSCEEEEEEEEESSSCBC
T ss_pred CcCcEEEEecCCEEEEEEECCC-CCcceeEEEeecCCc--ceeE--EeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCCc
Confidence 3789999999999999999985 358999999998763 2222 2334678899999999999999999999999988
Q ss_pred CCCCceEEec
Q psy574 627 KPSNLRAVRT 636 (977)
Q Consensus 627 ~~s~~~~~~T 636 (977)
.++. +.++|
T Consensus 78 ~~~~-~~~~T 86 (87)
T d1qr4a1 78 KPTT-IKGST 86 (87)
T ss_dssp CCEE-EEEEC
T ss_pred cCEE-EEEEc
Confidence 6553 55655
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.7e-10 Score=102.71 Aligned_cols=90 Identities=21% Similarity=0.322 Sum_probs=74.1
Q ss_pred EEeeEeCCCeEEEEEEec---CC--------CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 550 TEVKPMTSTSVKLTWEIL---NT--------DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p---~~--------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
..+..++.++|.|+|++| ++ ..+.+|.++|+..+....|..... ...+.++|.+|+|++.|.|+|+
T Consensus 24 P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~i~~L~P~t~Y~f~V~ 100 (137)
T d1wk0a_ 24 PVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYV---GEETNITLNDLKPAMDYHAKVQ 100 (137)
T ss_dssp CEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEE---ESCSEEEECSCCTTCEECEEEE
T ss_pred CEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEe---cCccEEEECCCCCCcEEEEEEE
Confidence 457788999999999998 22 145679999987775555554322 4668899999999999999999
Q ss_pred EeecceeCCCCCceEEeccCCCCC
Q psy574 619 PFFGSVDGKPSNLRAVRTLECEPS 642 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~~~P~ 642 (977)
|+|..|.|.+|..+.|+|.+.+|.
T Consensus 101 A~n~~G~g~~S~~~~~~T~~~~P~ 124 (137)
T d1wk0a_ 101 AEYNSIKGTPSEAEIFTTLSCEPD 124 (137)
T ss_dssp EEETTEECCCCCCCCEECCCSSSC
T ss_pred EEcCCcccCCCCCEEEECCCCCCC
Confidence 999999999999999999998885
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.9e-10 Score=97.66 Aligned_cols=88 Identities=24% Similarity=0.271 Sum_probs=65.3
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE---ec----------CcEEEEcCCCC
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL---VD----------GTNLAIQDSRK 70 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~---~~----------~g~L~I~~v~~ 70 (977)
||.+...+.. +.+..|++++|.|.+ .+.|.+.|.|++||..+.......... .. .+.|.|.+++.
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 79 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 79 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence 4666654433 567889999999999 899999999999999985433222111 11 13699999999
Q ss_pred CCCe-EEEEEEEecCceeeeEeEEE
Q psy574 71 TDDG-RYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 71 ~D~G-~Y~C~a~n~~g~~~s~~~~l 94 (977)
+|.| .|+|.|.|..|... ..+.|
T Consensus 80 ~D~g~~Y~C~A~N~~G~~~-~~i~L 103 (107)
T d1iray3 80 RFYKHPFTCFAKNTHGIDA-AYIQL 103 (107)
T ss_dssp GGGSSCEEEEEECSSCEEE-EEEEE
T ss_pred HHCCcEEEEEEEeCCCeEE-EEEEE
Confidence 9999 59999999999743 33443
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=7.8e-10 Score=95.22 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=68.7
Q ss_pred CCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC---Cce-EEeccceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 105 GPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE---DRM-SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~---~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
.|....+.+|+.+.|.|.+ .+.|.+.|.|+|++..+.. .+. ....+++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~ 87 (101)
T d1iray1 8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI 87 (101)
T ss_dssp CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEE
Confidence 4555678899999999988 5789999999999876532 122 2235679999999999999999999999999999
Q ss_pred EEEEEEee
Q psy574 180 SATLTVQM 187 (977)
Q Consensus 180 ~~~L~V~~ 187 (977)
.+.|.|..
T Consensus 88 ~~~L~V~~ 95 (101)
T d1iray1 88 KISAKFVE 95 (101)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99999974
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=8e-10 Score=96.78 Aligned_cols=86 Identities=26% Similarity=0.373 Sum_probs=67.8
Q ss_pred CCeEEeCCCc-eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc--eE----Ee----------ccceEEEccCccC
Q psy574 99 KPYIIRGPKD-TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MS----VL----------PSRSLQLSDVRLE 161 (977)
Q Consensus 99 ~P~~~~~p~~-~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~--~~----~~----------~~~~L~I~~v~~~ 161 (977)
+|.+..++.. ..+..|+++.|.|.+.|.|.+.|.|++++..+.... .. .. ....|.|.+++.+
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 80 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 80 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence 3666665543 456789999999999999999999999998875321 11 00 1247999999999
Q ss_pred CCe-EEEEEEEeCCeeEEEEEEEE
Q psy574 162 DAG-EYVCEAENAVGKISASATLT 184 (977)
Q Consensus 162 D~G-~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|.| .|+|.|.|..|..++.+.|.
T Consensus 81 D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 81 FYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred HCCcEEEEEEEeCCCeEEEEEEEE
Confidence 999 59999999999998888875
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.5e-09 Score=90.77 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=68.7
Q ss_pred EEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
.++++..++.+++.|+|++|. +.+.+|.|.|+..+. .+... ....+.+++.|.+|.|++.|.|+|+|.+..|.|.
T Consensus 6 ~~l~~~~~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~~--~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~ 80 (93)
T d2cuma1 6 RDLEAKEVTPRTALLTWTEPP-VRPAGYLLSFHTPGG--QTQEI--LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLP 80 (93)
T ss_dssp EEEEEESCCSSCEEEEEECCS-SCCSEEEEEEECTTS--CEEEE--EECSSCSEEEECSCCTTCEEEEEEEEEBTTBCCC
T ss_pred CCCEEEEeCCCEEEEEEEccc-cccccEEEEEEcccc--ccEEE--EECCCccEEEEeCccCCCEEEEEEEEEeCCCCCC
Confidence 789999999999999999984 458999999998653 33333 3346788999999999999999999999999887
Q ss_pred CCCceEEecc
Q psy574 628 PSNLRAVRTL 637 (977)
Q Consensus 628 ~s~~~~~~T~ 637 (977)
++. ..++|.
T Consensus 81 ~~~-~~~tT~ 89 (93)
T d2cuma1 81 PVS-TSFTTG 89 (93)
T ss_dssp CEE-EEEECC
T ss_pred CEE-EEEEeC
Confidence 654 556664
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.6e-09 Score=92.21 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
.|.||.++.+..++.+++.|+|.+|.. ..+..|.|+|+..... .|.... ......+++.+|.|++
T Consensus 2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~-----------~~~~~~-~~~~~~~~~~~L~p~t 66 (95)
T d2b5ic1 2 IPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDH-----------SWTEQS-VDYRHKFSLPSVDGQK 66 (95)
T ss_dssp ECCCCEEEEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCS-----------SCEEEE-ECSSCEEEECSCCTTS
T ss_pred CCcCCCCCEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCc-----------eeeEee-ecccceeEcCCCCCCC
Confidence 489999999999999999999998865 4578999999876554 676654 3567789999999999
Q ss_pred eEEEEEEEEcCCC---CCCCCCCCceEE
Q psy574 477 TYTFLVRALNSHG---LSAPSPLSDEIV 501 (977)
Q Consensus 477 ~Y~~~V~a~n~~G---~s~~S~~s~~~~ 501 (977)
.|.|+|||.+..+ .|.+|.+|..++
T Consensus 67 ~Y~frVRa~~~~~~~~~g~WSeWS~pv~ 94 (95)
T d2b5ic1 67 RYTFRVRSRFNPLCGSAQHWSEWSHPIH 94 (95)
T ss_dssp CEEEEEEEECCSSSCCCCCCCCCCCCEE
T ss_pred EEEEEEEEeeCCCCCCCCCccCCCCcee
Confidence 9999999987654 455777777653
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.7e-09 Score=89.93 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=67.9
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|+++++..++.++|+|+|++|. +.+.+|+|+|+..+. ..+..... ......+.|.+|+|++.|.|+|+|.|..|.|
T Consensus 5 P~~l~v~~~~~~si~v~W~~p~-~~~~~Y~i~~~~~~~-~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s 80 (90)
T d1fnha2 5 PRRARVTDATETTITISWRTKT-ETITGFQVDAVPANG-QTPIQRTI--KPDVRSYTITGLQPGTDYKIYLYTLNDNARS 80 (90)
T ss_dssp CEEEEEEEECSSEEEEEEECCS-SCCCCEEEEEEESSS-SCCEEEEC--CTTCSEEEEESCCTTCEEEEEEEEEETTEEC
T ss_pred CCCCEEEEecCCEEEEEEECCC-CCCceeEEEEEEccC-CceEEEec--CCCccEEEeCCCCCCcEEEEEEEEEeCCCCc
Confidence 4789999999999999999874 468999999998764 33443332 3678899999999999999999999999988
Q ss_pred CCCCceEEec
Q psy574 627 KPSNLRAVRT 636 (977)
Q Consensus 627 ~~s~~~~~~T 636 (977)
.+.. +.++|
T Consensus 81 ~p~~-~~~~T 89 (90)
T d1fnha2 81 SPVV-IDAST 89 (90)
T ss_dssp CCEE-EEEEC
T ss_pred CCEE-EEEEC
Confidence 6433 44443
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.2e-09 Score=93.34 Aligned_cols=90 Identities=17% Similarity=0.034 Sum_probs=69.6
Q ss_pred EEEEEeeEeCCCeEEEEEEec-C---CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-N---TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~---~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
|.+|++..++++++.|+|++| . ...+..|.++|+.......+...... ..+...+.|.+|+|++.|.|+|+|.+.
T Consensus 6 P~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~rVra~~~ 84 (104)
T d2b5ib2 6 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTL-KQKQEWICLETLTPDTQYEFQVRVKPL 84 (104)
T ss_dssp CEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEE-CSCCCEEEECSCCTTCEEEEEEEEEES
T ss_pred CCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEec-CCCcEEEEECCCCCCCEEEEEEEEEEC
Confidence 489999999999999999998 2 23456789999887754333332222 256788999999999999999999998
Q ss_pred cee----CCCCCceEEecc
Q psy574 623 SVD----GKPSNLRAVRTL 637 (977)
Q Consensus 623 ~g~----g~~s~~~~~~T~ 637 (977)
.|. +.+|..+.++|.
T Consensus 85 ~g~~g~wS~wS~~v~~~T~ 103 (104)
T d2b5ib2 85 QGEFTTWSPWSQPLAFRTK 103 (104)
T ss_dssp CCSSCCCCCCCCCEEEECC
T ss_pred CCCCCCCCCCcCCEEEECC
Confidence 875 455667888875
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.1e-10 Score=98.21 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=71.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce--EEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~--~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.|+.+...|.+..+.+|+.++|.|.+.| .|.+ .+.|+|++..+....... .....|.|..+..+|.|.|+|+|+|.
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~ 82 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELD 82 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEE
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeC
Confidence 4667778888888999999999999965 5544 689999998875321111 12357999999999999999999999
Q ss_pred CeeEEEEEEEEEeeCCeE
Q psy574 174 VGKISASATLTVQMAPIV 191 (977)
Q Consensus 174 ~g~~~~~~~L~V~~~p~~ 191 (977)
.|.....+.+.+..|..+
T Consensus 83 ~g~~~~~~~~~~s~p~~L 100 (103)
T d1iama1 83 LRPQGLELFENTSAPYQL 100 (103)
T ss_dssp CGGGTSCEEEEECCCEEC
T ss_pred CCCccCeEeeeEcCCCEE
Confidence 887666666666655544
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=2.7e-09 Score=88.99 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=64.8
Q ss_pred EEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
.++++..++.+++.|+|++|. +.+.+|.|+|+..+.. .+ ...+ ....+++.|.+|.|++.|.|+|+|.+..|.|.
T Consensus 5 ~nl~v~~~~~~s~~l~W~~p~-~~~~~Y~v~~~~~~~~-~~-~~~~--~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~ 79 (86)
T d1tdqa3 5 RDLMVTASSETSISLIWTKAS-GPIDHYRITFTPSSGI-SS-EVTV--PRDRTSYTLTDLEPGAEYIISITAERGRQQSL 79 (86)
T ss_dssp EEEEEEEECSSCEEEEEECCC-SCCSEEEEEEECSSSC-CE-EEEE--ESSCSEEEECCCCTTCCEEEEEEEEETTEECC
T ss_pred CCCEEEEecCCEEEEEEeCCC-CCccceEEEEeccccc-ce-EEEe--CCCccEEEECCCccccEEEEEEEEEcCCCEEC
Confidence 789999999999999999984 4689999999987642 22 2222 36778999999999999999999999999886
Q ss_pred CCC
Q psy574 628 PSN 630 (977)
Q Consensus 628 ~s~ 630 (977)
++.
T Consensus 80 p~~ 82 (86)
T d1tdqa3 80 EST 82 (86)
T ss_dssp CEE
T ss_pred CEE
Confidence 654
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.95 E-value=1.1e-10 Score=102.49 Aligned_cols=76 Identities=28% Similarity=0.403 Sum_probs=62.8
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC-----CCceEEEecCcEEEEcCCCCCCCe---EEEEEEEecCc
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE-----NSKRLRLVDGTNLAIQDSRKTDDG---RYQCVVKNVAG 85 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~-----~~~r~~~~~~g~L~I~~v~~~D~G---~Y~C~a~n~~g 85 (977)
+.++.+|++++|.|.+..|.|.|.+.|+|++..+... ...++.+..+++|.|.+++.+|+| .|.|.|.|..|
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g 90 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV 90 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence 5678899999999997689999999999987665322 235677778899999999998877 79999999988
Q ss_pred eeee
Q psy574 86 TRES 89 (977)
Q Consensus 86 ~~~s 89 (977)
....
T Consensus 91 ~~~~ 94 (111)
T d1biha2 91 DEEV 94 (111)
T ss_dssp SSCE
T ss_pred CceE
Confidence 7543
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=6.2e-10 Score=96.88 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=66.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE-----e------------ecCCCceEEEecCcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----I------------DFENSKRLRLVDGTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~-----l------------~~~~~~r~~~~~~g~L~I~~v~~ 70 (977)
+++++....+.+|++|+|.|... ......+.|+|+... + .....+|..+..+|+|+|.+++.
T Consensus 2 vti~~~P~~v~~G~~V~L~c~~~-p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~ 80 (107)
T d1l6za1 2 VTIEAVPPQVAEDNNVLLLVHNL-PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80 (107)
T ss_dssp CEEEEESSSCCTTCCEEEEEESC-CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCG
T ss_pred cEEEEcCCcccCCCCEEEEecCC-CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCc
Confidence 45565556788999999999862 233568999985432 1 12235799999999999999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+|+|.|+|.+.+..+......+.|.|
T Consensus 81 ~D~G~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 81 KDMGVYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp GGCEEEEEEEEETTEEECCCCEEECC
T ss_pred hhCEEEEEEEEECCCCEEEEEEEEEE
Confidence 99999999999887665666666665
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.2e-09 Score=94.16 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=63.0
Q ss_pred eEEeCCCeEEEEE------EecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCee----E
Q psy574 109 TTVSASSIIVFEC------SVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK----I 177 (977)
Q Consensus 109 ~~v~~G~~v~l~C------~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~----~ 177 (977)
+.+..|....|.| .+.|+|.|.|.|+||+..+..+ +.....++.|.|.+++.+|+|.|+|.|.|..+. .
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~v 88 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI 88 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEEE
Confidence 5788999999999 5678999999999999998654 334456789999999999999999999987653 3
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|.|.
T Consensus 89 t~~i~~~v~ 97 (103)
T d1iray2 89 TRVIEFITL 97 (103)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 445555554
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=7.3e-11 Score=105.22 Aligned_cols=101 Identities=26% Similarity=0.364 Sum_probs=78.1
Q ss_pred EEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCCccccEEEEEcc--CC-ceEEEEeecc
Q psy574 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGDRVDNIQAEITS--DG-MNLLKIQNVS 258 (977)
Q Consensus 183 L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~--~g-~s~L~I~~v~ 258 (977)
|+|..||.+. .+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+... ...++.+.... ++ .+.|.|.+++
T Consensus 2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~---~~~~~~~~~~~~~~~~~s~L~I~~v~ 77 (115)
T d2crya1 2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG---TSGRYTVETISTEEGVISTLTISNIV 77 (115)
T ss_dssp CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSE---EETTEEEEEEEETTEEEEEEECTTCC
T ss_pred eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeee---eeeeEeeeeeccccCcEEEEEEeccc
Confidence 6788888775 45677888999999999999864 5579999999877432 23344433321 12 2579999999
Q ss_pred cCC-CCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 259 RTA-APLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 259 ~~d-~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
.+| +|.|+ |.|.|..|..+..+.|.|...
T Consensus 78 ~~D~~G~Y~-C~A~N~~G~~~~~~~L~V~~~ 107 (115)
T d2crya1 78 RADFQTIYN-CTAWNSFGSDTEIIRLKEQGS 107 (115)
T ss_dssp HHHHHSCEE-EEEECSSCEEEEEECCCCSCS
T ss_pred hhcCCeEEE-EEEEECCCeEEEEEEEEEECC
Confidence 999 69999 999999999999999888763
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=4e-09 Score=91.42 Aligned_cols=86 Identities=12% Similarity=-0.032 Sum_probs=66.8
Q ss_pred EEEEEee----EeCCCeEEEEEEecC------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 547 IELTEVK----PMTSTSVKLTWEILN------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 547 ~~~l~~~----~~~~tsv~lsW~~p~------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
|.++.+. ....++|.|+|++|. +..+.+|.|+|+..+ ...|..... ...+.+.|.+|.|++.|.|+
T Consensus 6 P~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~-~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~r 81 (103)
T d1f6fb2 6 PRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEE-AEEWEIHFT---GHQTQFKVFDLYPGQKYLVQ 81 (103)
T ss_dssp CEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESS-CSCCEEEEE---ETCSEEEECCCCTTCEEEEE
T ss_pred CCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCC-Ccceeeecc---cceeEEEeCCCCcceEEEEE
Confidence 3566654 456788999999991 236679999999887 466654433 35679999999999999999
Q ss_pred EEEeeccee-CCCCCceEEec
Q psy574 617 LVPFFGSVD-GKPSNLRAVRT 636 (977)
Q Consensus 617 V~a~n~~g~-g~~s~~~~~~T 636 (977)
|+|.+..|. |.+|+.+.+.|
T Consensus 82 Vra~~~~G~wS~wS~~~~~~~ 102 (103)
T d1f6fb2 82 TRCKPDHGYWSRWSQESSVEM 102 (103)
T ss_dssp EEEEESSSCCCCCCCCEEEEC
T ss_pred EEEEeCCCCCCCCcCceeeEC
Confidence 999999986 88888887765
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=9.7e-10 Score=95.11 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=59.9
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCC---ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEe
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTD---YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF 620 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~---~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 620 (977)
+|.+|.+...+++++.|+|++| .++ ....|.|+|+..+....+....+........+.|.+|+|++.|.|+|+|.
T Consensus 4 ~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA~ 83 (101)
T d1iarb2 4 APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 83 (101)
T ss_dssp CCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEEEE
T ss_pred cCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEEEEE
Confidence 3489999999999999999988 222 23469999998886555555555554566789999999999999999999
Q ss_pred ecceeCCCCCc
Q psy574 621 FGSVDGKPSNL 631 (977)
Q Consensus 621 n~~g~g~~s~~ 631 (977)
|..|.|.+|++
T Consensus 84 ~~~g~g~wSew 94 (101)
T d1iarb2 84 AQAYNTTWSEW 94 (101)
T ss_dssp CGGGTCCCCCC
T ss_pred cCCCCCCCcCC
Confidence 99999877764
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.4e-10 Score=103.42 Aligned_cols=100 Identities=8% Similarity=0.008 Sum_probs=72.2
Q ss_pred CceEEEEEeeE-eCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 544 GSLIELTEVKP-MTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 544 ~~~~~~l~~~~-~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
+.++.++++.. .++++|.|+|++| .+..+.+|.+.|+.... ............+.+.+.|.+|++++.|.|+|+
T Consensus 11 p~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~-~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~v~V~ 89 (117)
T d2cspa1 11 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK-GQRVAEVIFPTADSTAVELVRLRSLEAKGVTVR 89 (117)
T ss_dssp CCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS-SSEEEEECCTTCSEEEEESHHHHHHTCSCBEEE
T ss_pred CCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee-cccceeeeeeccceeeeeccCCCCCcEEEEEEE
Confidence 44557888865 6778999999998 22333444444544332 222222233345667889999999999999999
Q ss_pred EeecceeCCCCCceEEeccCCCCCCC
Q psy574 619 PFFGSVDGKPSNLRAVRTLECEPSGV 644 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~~~P~~~ 644 (977)
|+|..|.|..|..+.++|.+.+|+.|
T Consensus 90 A~n~~G~s~~S~~v~i~t~~~vP~~P 115 (117)
T d2cspa1 90 TLSAQGESVDSAVAAVPPELLVPPTP 115 (117)
T ss_dssp EEESSCCCCCCSCBCCCHHHHSCCCC
T ss_pred EEcCCCcCCCCCCEEeeCCCCCCccc
Confidence 99999999999999999998888743
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=8.8e-10 Score=93.72 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=63.7
Q ss_pred CCeEEeCCC-ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe---ccceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPK-DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL---PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~-~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.|..... ...+.+|+++.|.|.+. .|.+.+.|+|++..+..+ ++.+. ....|.|.++..+|+|.|+|.|.|
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n 83 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 83 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence 466666654 45789999999999995 488899999999988542 34443 234799999999999999999965
Q ss_pred CCeeEEEEEEEEEe
Q psy574 173 AVGKISASATLTVQ 186 (977)
Q Consensus 173 ~~g~~~~~~~L~V~ 186 (977)
...++.|.|.
T Consensus 84 ----~~~s~~l~V~ 93 (94)
T d1pd6a_ 84 ----EKCSTELFVK 93 (94)
T ss_dssp ----EEECCEEEEE
T ss_pred ----EEEEEEEEEE
Confidence 3455667664
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=98.92 E-value=5.7e-10 Score=92.55 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=63.3
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+|.+...|....+.+|++++|.|.+.|.|.+. +.|++++..+.. .+.+|.|.++..+|+|.|+|.|.|...
T Consensus 4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~~s~~- 76 (84)
T d1fnla1 4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL- 76 (84)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC-
T ss_pred CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------cceeeEecCCcccCCEEEEEEccCCCc-
Confidence 356777888889999999999999999888775 566787776543 456899999999999999999987543
Q ss_pred EEEEEEEEE
Q psy574 177 ISASATLTV 185 (977)
Q Consensus 177 ~~~~~~L~V 185 (977)
+..+.|.|
T Consensus 77 -S~~v~L~V 84 (84)
T d1fnla1 77 -SDPVQLEV 84 (84)
T ss_dssp -CCCEEEEE
T ss_pred -cccEEEEC
Confidence 34455544
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.1e-09 Score=92.21 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=63.1
Q ss_pred EEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
|.++++..++.+++.|+|++|. +.+.+|.|+|+..+. ..+.. ........+++.|.+|.|++.|.|+|+|.|..|.|
T Consensus 4 P~nl~v~~~~~~s~~l~W~~p~-~~i~~Y~i~~~~~~~-~~~~~-~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g~S 80 (89)
T d1fnha3 4 PSNLRFLATTPNSLLVSWQPPR-ARITGYIIKYEKPGS-PPREV-VPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 80 (89)
T ss_dssp CEEEEEEEEETTEEEEEEECCS-SCCSEEEEEEECTTS-CCEEC-TTCCCTTCCEEEEESCCTTCEEEEEEEEESSSCEE
T ss_pred CcCCEEEEecCCEEEEEEeCCC-cCCceEEEEEeeccC-CccEE-EEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCCEe
Confidence 3789999999999999999984 468999999998764 22222 22223567899999999999999999999998876
Q ss_pred C
Q psy574 627 K 627 (977)
Q Consensus 627 ~ 627 (977)
.
T Consensus 81 ~ 81 (89)
T d1fnha3 81 E 81 (89)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.91 E-value=2.2e-09 Score=90.01 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=69.4
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeE
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y 478 (977)
++|.++++.+++.+++.|+|.++. +.+.+|.|+|...+.. .|..........++++.+|.|++.|
T Consensus 2 ~~P~~l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L~p~t~Y 66 (88)
T d1qr4a2 2 GSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGG-----------TPNVVTVDGSKTRTKLVKLVPGVDY 66 (88)
T ss_dssp CCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCC-----------CCEEEEEETTCCEEEECSCCSSCEE
T ss_pred cCCcceEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCC-----------ceEEEEecCCccEEEECCCCCCCEE
Confidence 578999999999999999999874 3688999999887654 5666666778889999999999999
Q ss_pred EEEEEEEcCCCCCCC
Q psy574 479 TFLVRALNSHGLSAP 493 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~ 493 (977)
.|+|.|+|..|.|.+
T Consensus 67 ~~~V~a~~~~g~s~p 81 (88)
T d1qr4a2 67 NVNIISVKGFEESEP 81 (88)
T ss_dssp EEEEEEEETTEECCC
T ss_pred EEEEEEEeCCCCcCC
Confidence 999999999998765
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=98.91 E-value=7.7e-10 Score=92.03 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=65.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|....+.+|++++|.|.+.+.|.+ .+.|++|+..+.. .+..|.|.++..+|+|.|+|.|.|..+
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~------~~~~l~i~~v~~~dsG~Y~C~a~ns~~-- 75 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT------HTQPSYRFKANNNDSGEYTCQTGQTSL-- 75 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT------CCSSEEEEECCGGGCEEEEEECTTSBC--
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc------cccceEEeeccccCCcEEEEECCCCcc--
Confidence 3567777888899999999999999887765 6889999988865 356799999999999999999987643
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|+|.
T Consensus 76 S~~v~l~V~ 84 (85)
T d2fcba1 76 SDPVHLTVL 84 (85)
T ss_dssp CCCEEEEEE
T ss_pred cccEEEEEE
Confidence 445666664
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.8e-09 Score=93.55 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=69.9
Q ss_pred CCCceeEEEEe--cCcEEEEEeeCCCCC-CCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 643 GVPQLTDPVLL--NATSVLLKWKPPPVG-THNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 643 ~~P~~v~~~~~--~~~sv~v~W~~p~~~-~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
.||.++++... +.++|.|+|++|... ...+.+..|.++|+..+...+.... ..+.+.++|.+|.+++.|.|+|+|.
T Consensus 9 ~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~t~Y~~rVrA~ 87 (109)
T d1uc6a_ 9 DPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE-LSNGTAHTITDAYAGKEYIIQVAAK 87 (109)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE-ESSCSEEEETTCCSSSCEEEEEECC
T ss_pred CCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec-cCCceeEEeCCCCCCCEEEEEEEEE
Confidence 48899998765 457899999998532 3445678899999886644433333 4467899999999999999999998
Q ss_pred cCCC--cCCCCCceEEeec
Q psy574 720 NRAG--TGPYSRPALLSLT 736 (977)
Q Consensus 720 ~~~G--~g~~S~~~~~~t~ 736 (977)
+..+ .|.||+++.+++.
T Consensus 88 ~~~~g~wS~WS~~~~~tt~ 106 (109)
T d1uc6a_ 88 DNEIGTWSDWSVAAHATPW 106 (109)
T ss_dssp BSSSCCCCCCCEEEEECCC
T ss_pred ECCCCCcCCCCCCEEeECC
Confidence 8643 2677888877543
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2.3e-09 Score=91.58 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=66.1
Q ss_pred cceEEeCCCcEEEEEEC-CCCCCCCeEEEEeCCEEee--------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 13 KSQRVAAGDTALLECGP-PRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~-~~g~P~~~v~W~k~g~~l~--------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
..+....|++|+|.|.. +.......|.|+|++..+. ...+.|..+..+|+|.|.+++.+|+|.|+|.+.+.
T Consensus 3 ~tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~ 82 (98)
T d1hnga1 3 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 82 (98)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred cEEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeC
Confidence 45788999999999964 2223335799999998773 12345677778899999999999999999999998
Q ss_pred Ccee-eeEeEEEEEE
Q psy574 84 AGTR-ESTDAVLRVL 97 (977)
Q Consensus 84 ~g~~-~s~~~~l~V~ 97 (977)
.|.. ....+.|.|+
T Consensus 83 ~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 83 NGTRILNKALDLRIL 97 (98)
T ss_dssp TCCEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEE
Confidence 8864 3567788876
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.5e-09 Score=93.69 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCe-eeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG-VIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng-~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A 718 (977)
+.+|| +|++.. +.+++.|+|.+|. ..++ .+..|+|+|+..+ .............++++|.+|+|++.|.|+|||
T Consensus 5 k~~Pp-~l~v~~-~~~s~~l~W~~P~--~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa 80 (100)
T d2gysa4 5 QMAPP-SLQVTK-DGDSYSLRWETMK--MRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRV 80 (100)
T ss_dssp CCCCC-EEEEC----CCCEEEEEC----------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEE
T ss_pred cCCCC-ccEEEE-CCCEEEEEEecCc--ccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEE
Confidence 44466 788765 4578999999984 3333 5678999998765 222223333446789999999999999999999
Q ss_pred EcCCCc
Q psy574 719 TNRAGT 724 (977)
Q Consensus 719 ~~~~G~ 724 (977)
.+..|.
T Consensus 81 ~~~~g~ 86 (100)
T d2gysa4 81 RTSRTG 86 (100)
T ss_dssp EECCTT
T ss_pred EECCCC
Confidence 998764
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.5e-09 Score=92.18 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=61.2
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEe-cCcEEEEcCCCCCCCeEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
++++.+..|++|+|.|.. +.|.+.|.|+|++..+.. ....|..+. .+++|.|.+++.+|+|.|+|.+
T Consensus 2 s~~v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~ 79 (93)
T d1ccza1 2 SQQIYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79 (93)
T ss_dssp EEEEEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred CcEEEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEE
Confidence 356889999999999976 578899999999987631 122344443 2568999999999999999999
Q ss_pred EecCceeeeEeEEEEE
Q psy574 81 KNVAGTRESTDAVLRV 96 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V 96 (977)
.|..+. ..+.|+|
T Consensus 80 ~n~~~t---~~~~l~V 92 (93)
T d1ccza1 80 PNITDT---MKFFLYV 92 (93)
T ss_dssp TTCCSC---EEEEEEE
T ss_pred ECCCcE---EEEEEEE
Confidence 876553 3456665
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.8e-09 Score=90.59 Aligned_cols=86 Identities=10% Similarity=-0.053 Sum_probs=62.3
Q ss_pred EEEEee----EeCCCeEEEEEEecC------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 548 ELTEVK----PMTSTSVKLTWEILN------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 548 ~~l~~~----~~~~tsv~lsW~~p~------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
.++.+. ..+.++|.|+|++|. ...+..|.++|+..+. ..|..... ...+.++|.+|+|++.|.|+|
T Consensus 7 ~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~-~~~~~~~~---~~~~~~~i~~L~p~t~Y~~rV 82 (104)
T d3d48r2 7 LELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIHFA---GQQTEFKILSLHPGQKYLVQV 82 (104)
T ss_dssp EEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTC-SSCEEEEE---ETCSEEEECC--CCCEEEEEE
T ss_pred CCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccc-cceeeecc---ccccEEEECCCCCCCEEEEEE
Confidence 566654 456788999999981 2345678999988773 44443322 456889999999999999999
Q ss_pred EEeeccee-CCCCCceEEecc
Q psy574 618 VPFFGSVD-GKPSNLRAVRTL 637 (977)
Q Consensus 618 ~a~n~~g~-g~~s~~~~~~T~ 637 (977)
+|.|..|. |++|+.+.++|+
T Consensus 83 rA~n~~G~ws~wS~~~~v~tP 103 (104)
T d3d48r2 83 RCKPDHGYWSAWSPATFIQIP 103 (104)
T ss_dssp EEEESSSCCCCCCCCEEEECC
T ss_pred EEEeCCCCCCCCcCCEEEECc
Confidence 99999997 999999988875
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=6.1e-10 Score=91.89 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=62.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|....+.+|++++|.|.+.+.|.+. +.|++++..+.. .+..|.|.+++.+|+|.|+|.|.|..+
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~v~~~d~G~Y~C~a~~s~~-- 72 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE-- 72 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC--
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec------ccceeEECCCChhhCCcEEEEecCCCC--
Confidence 47777888888999999999999998888774 567888887764 456799999999999999999987654
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+..+.|.|.
T Consensus 73 S~~v~l~V~ 81 (82)
T d1f2qa1 73 SEPVYLEVF 81 (82)
T ss_dssp CCCEEEEEE
T ss_pred cccEEEEEE
Confidence 445667664
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.6e-09 Score=93.70 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=69.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCC------CCceEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPP------ASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~------~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
+..+.+|++..++.++|.|+|++|. +.+.+|.|+|+..... ...............++.|.+|+|++.|+|+|
T Consensus 4 Pp~~~~l~v~~~t~~sv~v~W~pp~-~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~~V 82 (101)
T d2cuia1 4 RPRLSQLSVTDVTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTL 82 (101)
T ss_dssp CCCCCCCEEESCCSSCEEEECCCCT-TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCEEEEEEEecc-ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEEEEEE
Confidence 4445789999999999999999874 4689999999987641 11111222334678899999999999999999
Q ss_pred EEeecceeCCCCCceEEec
Q psy574 618 VPFFGSVDGKPSNLRAVRT 636 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T 636 (977)
+|+|..|.|..+. ..++|
T Consensus 83 ~a~~~~g~g~~~~-~~~~T 100 (101)
T d2cuia1 83 YGLRGPHKADSIQ-GTART 100 (101)
T ss_dssp EEECSSSEEEEEE-EEEEC
T ss_pred EEEeCCcEeCCeE-EEeEE
Confidence 9999999986543 45554
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.3e-09 Score=88.51 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=67.1
Q ss_pred EecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 192 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
...+.+..+.+|+++.|.|.+ +.|.+.+.|++++.++... ...++.+... ++.+.|.|.+++.+|+|.|+ |.|.
T Consensus 4 ~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~---~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~ 77 (90)
T d1x44a1 4 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPG---PKSRYRIRVE-GKKHILIIEGATKADAAEYS-VMTT 77 (90)
T ss_dssp SBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCS---TTCSEEEEEE-TTEEEEEEEEECTTTCSEEE-EEET
T ss_pred EcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCC---CCccEEEEEe-CCccEEEECccccccCEEEE-EEEe
Confidence 345678899999999999998 4688899999999876431 2334555443 45679999999999999999 9986
Q ss_pred cCCCceeEEEEEEEEC
Q psy574 272 NAAGSDLARASLTVSG 287 (977)
Q Consensus 272 n~~g~~~~~~~l~V~~ 287 (977)
| ...++.|.|..
T Consensus 78 n----~~~~a~l~V~~ 89 (90)
T d1x44a1 78 G----GQSSAKLSVDL 89 (90)
T ss_dssp T----EEEEEEEEEEC
T ss_pred c----ceEEEEEEEEE
Confidence 5 45677787764
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.1e-10 Score=102.72 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=71.2
Q ss_pred EEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCC-------------CCceE--------EEEeecCccceEE
Q psy574 548 ELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPP-------------ASVAM--------LTVLHAGEASGFL 603 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~-------------~~~~~--------~~~~~~~~~~~~~ 603 (977)
.+|.+...++++|.|+|++| +++.|.+|.|+|+..... ..|.. .........++++
T Consensus 6 lnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (125)
T d2dtge3 6 LKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWL 85 (125)
T ss_dssp CCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEE
T ss_pred EEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCEEE
Confidence 57889999999999999998 457899999999886531 12221 1112235677899
Q ss_pred ECCCCCCcEEEEEEEEeeccee-----CCCCCceEEecc
Q psy574 604 VTGLAHYSRYEFFLVPFFGSVD-----GKPSNLRAVRTL 637 (977)
Q Consensus 604 i~~L~p~t~Y~~~V~a~n~~g~-----g~~s~~~~~~T~ 637 (977)
|.+|+|+|.|.|+|+|+|..|. |+.|..+.++|.
T Consensus 86 l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~ 124 (125)
T d2dtge3 86 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 124 (125)
T ss_dssp ECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred ECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence 9999999999999999999995 778888888885
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=2e-09 Score=91.61 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=64.0
Q ss_pred EEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
++|++..++.++|+|+|++|. +.+.+|.|+|+..... .+ ..........+++.|.+|.|++.|.|+|+|.|..|.|.
T Consensus 6 ~~l~v~~vt~~sv~l~W~~p~-~~~~~y~i~~~~~~~~-~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~ 82 (94)
T d1j8ka_ 6 KGLAFTDVDVDSIKIAWESPQ-GQVSRYRVTYSSPEDG-IH-ELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQ 82 (94)
T ss_dssp CCCEEEEEETTEEEEECCCCS-SCCSCEEEEEEETTTE-EE-EECCCCCSSCCEEEECSCCCCSEEEEEEEECSSSCCCC
T ss_pred CCCEEEEecCCEEEEEEeCCC-ccccceEEEEEeecCC-Cc-eEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCCCcC
Confidence 578999999999999999884 3588999999987642 22 22223346788999999999999999999999998775
Q ss_pred CCC
Q psy574 628 PSN 630 (977)
Q Consensus 628 ~s~ 630 (977)
+..
T Consensus 83 p~~ 85 (94)
T d1j8ka_ 83 PLI 85 (94)
T ss_dssp CEE
T ss_pred CEE
Confidence 543
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=9.1e-09 Score=89.45 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=75.7
Q ss_pred CCCCCCCCCeEEeeC-CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 396 TYPGPPTKPTLVNQT-ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~-~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
+.|.||.++.+.... ...+.++|.+|.......+..|.|+|+..+... .+.........+++.|.+|.|
T Consensus 3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~----------~~~~~~~~~~~t~~~i~~L~p 72 (105)
T d1erna2 3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAG----------SVQRVEILEGRTECVLSNLRG 72 (105)
T ss_dssp BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCC----------EEEEEEECTTCCEEEECSCCS
T ss_pred cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCC----------ceEEEeecCCccEEEEeCCCC
Confidence 568999999888764 456999999987766777889999999876542 333444455668899999999
Q ss_pred CCeEEEEEEEEcC--CCCCCCCCCCceEEe
Q psy574 475 GLTYTFLVRALNS--HGLSAPSPLSDEIVL 502 (977)
Q Consensus 475 ~t~Y~~~V~a~n~--~G~s~~S~~s~~~~~ 502 (977)
++.|.|+|||.+. .+.|.+|.+|..+..
T Consensus 73 ~t~Y~~rVRar~~~~~~~G~WSeWS~~v~~ 102 (105)
T d1erna2 73 RTRYTFAVRARMAEPSFGGFWSAWSEPVSL 102 (105)
T ss_dssp SCEEEEEEEEEECSSSCCBCCCCCCCCEEE
T ss_pred CcEEEEEEEEEECCCCCCCCCCCCCCCEEe
Confidence 9999999999854 456788998888776
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.1e-09 Score=93.35 Aligned_cols=85 Identities=9% Similarity=0.093 Sum_probs=68.3
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
+|++|.++++...+..++.|+|.++.+ ++ ...+|.|+|+...... .|...........+.+.+|.+++
T Consensus 3 PP~~P~n~~~~~~~~~si~~~W~p~~~-~~-~~~~y~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~L~~~~ 70 (95)
T d1bqua1 3 PPEKPKNLSCIVNEGKKMRCEWDGGRE-TH-LETNFTLKSEWATHKF----------ADCKAKRDTPTSCTVDYSTVYFV 70 (95)
T ss_dssp CCCCCEEEEEEEETTSCCEEEEECCSC-CS-SCCEEEEEEEETTEEC----------CCEECCSSCTTEEECSSCCCTTS
T ss_pred CcCCCeeeEEEEccCCEEEEEEeCccc-CC-CceEEEEEEEEcccce----------eEeecccccceeeeeeeecCCCc
Confidence 589999999999999999999999876 33 4579999998765432 33333345556677788999999
Q ss_pred eEEEEEEEEcCCCCCCC
Q psy574 477 TYTFLVRALNSHGLSAP 493 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~ 493 (977)
.|.|+|+|.|..|.+..
T Consensus 71 ~Y~f~V~A~N~~G~s~S 87 (95)
T d1bqua1 71 NIEVWVEAENALGKVTS 87 (95)
T ss_dssp CEEEEEEEEETTEEEEC
T ss_pred EEEEEEEEEeCCccccC
Confidence 99999999999998753
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=4.3e-09 Score=92.96 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccC
Q psy574 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLT 473 (977)
Q Consensus 394 ~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~ 473 (977)
....|++|.++.+.. ..+++.|+|.+|.. .++.+.+|.|+|+..+. .+.........+.+++.+|.
T Consensus 17 ~~~vP~~P~~~~~~~-~~~si~v~W~~p~~-~~g~i~~Y~i~~~~~~~------------~~~~~~~~~~~~~~~i~~L~ 82 (113)
T d1x5ia1 17 ETRVPEVPSSLHVRP-LVTSIVVSWTPPEN-QNIVVRGYAIGYGIGSP------------HAQTIKVDYKQRYYTIENLD 82 (113)
T ss_dssp CSSCCCSCSEEEEEE-ETTEEEEEEECCSC-TTBCCCEEEEEECSSCG------------GGEEEECCTTCCEEEECSCC
T ss_pred CCCCCCCCEeeeeee-CCCEEEEEEEcccc-CCccEEEEEEEeeeccc------------cceeeeeeCCccEEEEeccc
Confidence 345789999998865 45799999998877 57789999999975432 33334456678899999999
Q ss_pred CCCeEEEEEEEEcCCCCCCCCC
Q psy574 474 VGLTYTFLVRALNSHGLSAPSP 495 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~ 495 (977)
|++.|.|+|+|.|..|.|+++.
T Consensus 83 p~t~Y~~~V~A~n~~G~g~~~~ 104 (113)
T d1x5ia1 83 PSSHYVITLKAFNNVGEGIPLY 104 (113)
T ss_dssp SSCEECCEEEEECSSCBCCCCC
T ss_pred cCcEEEEEEEEECCCcCCCCee
Confidence 9999999999999999998653
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=4e-09 Score=92.17 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCCCCCceeEE-EEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC----C--cceEEE--EecCCcCeEEecCCCCC
Q psy574 639 CEPSGVPQLTDP-VLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN----N--SALINM--TVSASTPTLLLTNLSAG 709 (977)
Q Consensus 639 ~~P~~~P~~v~~-~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~----~--~~~~~~--~~~~~~~~~~l~~L~p~ 709 (977)
+.|+++|+++++ ...+.++|.++|+++ .+.++. ..|.+.|.... . ...... ......+++.+.+|+++
T Consensus 2 G~PP~~P~~v~~i~~~~~~sv~~sW~p~--~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 78 (107)
T d1cd9b1 2 GYPPASPSNLSCLMHLTTNSLVCQWEPG--PETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY 78 (107)
T ss_dssp CCCCCCCEEEEEEEETTTTEEEEEEECC--SCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred CCccCCCcCCEEEEecCCCEEEEEEcCC--CCCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcC
Confidence 456779999985 466788999999988 555555 46666665532 1 111111 12245678899999999
Q ss_pred ceEEEEEEEEcCCCcCCCCCceEEe
Q psy574 710 IRYSVSLAATNRAGTGPYSRPALLS 734 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~~~~~~ 734 (977)
+.|.|+|+|.|..|.+. |+++.|.
T Consensus 79 t~Y~frV~A~N~~G~s~-S~~~~~~ 102 (107)
T d1cd9b1 79 QYMAIWVQAENMLGSSE-SPKLCLD 102 (107)
T ss_dssp SCEEEEEEEEETTEEEE-CCCEEEC
T ss_pred ceEEEEEEEEeCCcccc-CCCEEcc
Confidence 99999999999999985 7777664
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=6.5e-09 Score=90.45 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=66.4
Q ss_pred EEEEeeEeC------CCeEEEEEEec--CC----CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEE
Q psy574 548 ELTEVKPMT------STSVKLTWEIL--NT----DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 548 ~~l~~~~~~------~tsv~lsW~~p--~~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 615 (977)
.+|.+.... ..+|.|+|++| .+ ..+..|.|+|+..+ +..|..... ...+.+.|.+|.+++.|.|
T Consensus 5 ~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~-~~~w~~~~~---~~~~~~~i~~L~~~t~Y~f 80 (106)
T d1axib2 5 IALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN-ETKWKMMDP---ILTTSVPVYSLKVDKEYEV 80 (106)
T ss_dssp EEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT-CSSCEECCC---BSSSEEEEEEEETTSCEEE
T ss_pred CCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecC-Cccceeeee---cccceEEECCCCCCCEEEE
Confidence 566664432 34799999998 21 24678999999887 466765432 4567999999999999999
Q ss_pred EEEEeeccee--CCCCCceEEeccC
Q psy574 616 FLVPFFGSVD--GKPSNLRAVRTLE 638 (977)
Q Consensus 616 ~V~a~n~~g~--g~~s~~~~~~T~~ 638 (977)
+|+|.+..+. |.+|+.+.++|+|
T Consensus 81 rVRa~~~~~g~ws~wS~~v~v~~P~ 105 (106)
T d1axib2 81 RVRSKQRNSGNYGEFSEVLYVTLPQ 105 (106)
T ss_dssp EEEEEETTSSCCCCCCCCEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCEEEECCC
Confidence 9999986653 8889888888775
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.80 E-value=2.1e-09 Score=94.13 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=61.7
Q ss_pred ceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC--------CceEEeccceEEEccCccCCCe---EEEEEEEeCCe
Q psy574 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDVRLEDAG---EYVCEAENAVG 175 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~--------~~~~~~~~~~L~I~~v~~~D~G---~Y~C~a~n~~g 175 (977)
+.++.+|+++.|.|.+ .|.|.|.+.|+|++..+.. .++....+++|.|.+++.+|+| .|.|.|.|..|
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g 90 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV 90 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence 3467899999999997 8999999999998766421 3445557789999999988876 89999999998
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
.....+.+.+
T Consensus 91 ~~~~~~~~~~ 100 (111)
T d1biha2 91 DEEVVLVEYE 100 (111)
T ss_dssp SSCEEEEEEE
T ss_pred CceEEEEEEE
Confidence 7655544333
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.4e-08 Score=89.76 Aligned_cols=93 Identities=11% Similarity=-0.047 Sum_probs=69.1
Q ss_pred ceEEEEEeeEeCCCeEEEEEEecC--------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 545 SLIELTEVKPMTSTSVKLTWEILN--------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p~--------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
.+|.+|++. .+.+++.|+|++|. +..+..|.|+|+..+. ..+.............+.+.+|.|++.|.|+
T Consensus 7 ~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~r 84 (114)
T d2gysa2 7 PEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD-SWEDAAILLSNTSQATLGPEHLMPSSTYVAR 84 (114)
T ss_dssp CCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTS-CSTTCEEEEESSSEEEECTTTCCTTCEEEEE
T ss_pred CcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCC-ceEEEEEeeccCceEEEEeCCCCCCcEEEEE
Confidence 345888885 56689999999981 2234579999998774 3333333333356678899999999999999
Q ss_pred EEEeeccee------CCCCCceEEeccCC
Q psy574 617 LVPFFGSVD------GKPSNLRAVRTLEC 639 (977)
Q Consensus 617 V~a~n~~g~------g~~s~~~~~~T~~~ 639 (977)
|+|.+..|. |.+|..+.++|.++
T Consensus 85 VRa~~~~g~~~~g~wS~WS~~v~~~t~pg 113 (114)
T d2gysa2 85 VRTRLAPGSRLSGRPSKWSPEVCWDSQPG 113 (114)
T ss_dssp EEEEECTTSSCCBCCCCCCCCEEEECCCC
T ss_pred EEEEeCCCCCCCCCccCCcCCEeeeCcCC
Confidence 999998876 45677888988754
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.9e-09 Score=93.73 Aligned_cols=78 Identities=15% Similarity=0.257 Sum_probs=56.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEec
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+.+....+.+|+.++|+|.+..+.| .+.|+|+|||+.|..+.......... ..|.|...+.+|.|.|+|+|.|.
T Consensus 6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 45677788999999999999955555 45899999999995432222111111 24777778888888999999998
Q ss_pred Cce
Q psy574 84 AGT 86 (977)
Q Consensus 84 ~g~ 86 (977)
.+.
T Consensus 86 ~~~ 88 (106)
T d1zxqa1 86 LMS 88 (106)
T ss_dssp CGG
T ss_pred CCC
Confidence 764
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.8e-09 Score=89.45 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=64.1
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc--eEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA--LINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
+|.||++...+.+. .|+|++| ...+|.+..|.+......... ..........+.+.+.+|.++..|.|||+|.|.
T Consensus 3 ~P~nv~v~s~n~~~-~L~W~pP--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~ 79 (98)
T d1fyhb1 3 TPTNVTIESYNMNP-IVYWEYQ--IMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVG 79 (98)
T ss_dssp CCEEEEEECBSSCC-EEEEECC--CCSSCCEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEET
T ss_pred cCCceEEEEeCCcE-EEEECCC--CCCCCCceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcC
Confidence 68999998877554 5999998 666677666665544333222 223334556667788899999999999999999
Q ss_pred CCcCCCCCceEE
Q psy574 722 AGTGPYSRPALL 733 (977)
Q Consensus 722 ~G~g~~S~~~~~ 733 (977)
.|.|++++.-.|
T Consensus 80 ~g~S~ws~s~~f 91 (98)
T d1fyhb1 80 QKESAYAKSEEF 91 (98)
T ss_dssp TEECCCEECCCB
T ss_pred CcccCCccCCCc
Confidence 999999986554
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.1e-08 Score=87.70 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCCCCCCCCCeEEee--CCCceEEEEEcCCC--CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEE
Q psy574 395 STYPGPPTKPTLVNQ--TANGLTLAWSRNNQ--IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVT 470 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~--~~~sv~lsW~~p~~--~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~ 470 (977)
.+.|.||.++.+..+ +.+++.|+|.+|.. ........|.++++..... .|..+. ......++|.
T Consensus 5 iVkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~-----------~~~~~~-~~~~~~~~i~ 72 (109)
T d1uc6a_ 5 SVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD-----------QWQHVE-LSNGTAHTIT 72 (109)
T ss_dssp SCCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSC-----------CCCCEE-ESSCSEEEET
T ss_pred CEECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCC-----------ceEEec-cCCceeEEeC
Confidence 467999999988765 46789999999864 2344567899999876554 565443 4567789999
Q ss_pred ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 471 ~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
+|.+++.|.|+|+|.|. |.+.+|.+|..+..
T Consensus 73 ~L~~~t~Y~~rVrA~~~-~~g~wS~WS~~~~~ 103 (109)
T d1uc6a_ 73 DAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHA 103 (109)
T ss_dssp TCCSSSCEEEEEECCBS-SSCCCCCCCEEEEE
T ss_pred CCCCCCEEEEEEEEEEC-CCCCcCCCCCCEEe
Confidence 99999999999999885 67888888887766
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=3.6e-08 Score=88.81 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=64.2
Q ss_pred ccceEEeCCCcEEEEEECC--CCCCCCeEEEEeCCEEe-----------e----cCCCceEEEec------CcEEEEcCC
Q psy574 12 PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPI-----------D----FENSKRLRLVD------GTNLAIQDS 68 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~--~g~P~~~v~W~k~g~~l-----------~----~~~~~r~~~~~------~g~L~I~~v 68 (977)
+..+.+.+|++|+|.|.+. .+.....|.|+|++... . .....|..+.. +.+|.|.++
T Consensus 9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v 88 (126)
T d1pkoa_ 9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV 88 (126)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence 3348999999999999862 23344579999865321 0 11234455432 247999999
Q ss_pred CCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeC
Q psy574 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~ 105 (977)
+.+|+|.|+|.+.+..+. .+..+.|.|..|+.++.+
T Consensus 89 ~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~P~~~~~p 124 (126)
T d1pkoa_ 89 RFSDEGGYTCFFRDHSYQ-EEAAVELKVEDPFYWINP 124 (126)
T ss_dssp CGGGCEEEEEEEEETTEE-EEEEEEEEEECTTTTSST
T ss_pred chhHCeEEEEEEEECCCE-EEEEEEEEEeCCCEEeCC
Confidence 999999999999987665 456788999876554433
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=2.6e-08 Score=86.75 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=65.3
Q ss_pred CceEEEEEe-eEeCCCeEEEEEEec-CCCccceEEEEEEecCC---CCCceE--EEEeecCccceEEECCCCCCcEEEEE
Q psy574 544 GSLIELTEV-KPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDP---PASVAM--LTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 544 ~~~~~~l~~-~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~---~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
+.+|+++++ ...+.++|+|+|+++ .++....|.+.|+.... ...+.. ..........++.+.+|.+++.|.|+
T Consensus 5 P~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y~fr 84 (107)
T d1cd9b1 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIW 84 (107)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEEEE
T ss_pred cCCCcCCEEEEecCCCEEEEEEcCCCCCCCCcceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceEEEE
Confidence 445688885 567899999999988 55545778888876653 122222 22222345678999999999999999
Q ss_pred EEEeecceeCCCCCceEEe
Q psy574 617 LVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~ 635 (977)
|.|.|..|.+. |..+.|.
T Consensus 85 V~A~N~~G~s~-S~~~~~~ 102 (107)
T d1cd9b1 85 VQAENMLGSSE-SPKLCLD 102 (107)
T ss_dssp EEEEETTEEEE-CCCEEEC
T ss_pred EEEEeCCcccc-CCCEEcc
Confidence 99999999984 5556553
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=98.68 E-value=2.4e-09 Score=89.82 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=68.2
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEE
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a 270 (977)
|...+.+..+.+|+++.|.|.+ +.|.+.+.|+|+|.++. ...++.+... ++.+.|.|.+++.+|+|.|+ |.|
T Consensus 4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~-----~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~-c~a 75 (89)
T d1tiua_ 4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLT-----ASPDCEIIED-GKKHILILHNCQLGMTGEVS-FQA 75 (89)
T ss_dssp CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCC-----SSSSCEEEEC-SSCEEEECCSCCSCCCSEEC-CBC
T ss_pred EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecc-----cceeEEEEee-ceeEEEEEcCCChhcCEEEE-EEE
Confidence 4456788899999999999998 57889999999998873 4456666654 46689999999999999999 987
Q ss_pred EcCCCceeEEEEEEEEC
Q psy574 271 VNAAGSDLARASLTVSG 287 (977)
Q Consensus 271 ~n~~g~~~~~~~l~V~~ 287 (977)
.|. ..++.|.|.+
T Consensus 76 ~n~----~~sa~l~V~e 88 (89)
T d1tiua_ 76 ANA----KSAANLKVKE 88 (89)
T ss_dssp SSC----BCCEEEEEEC
T ss_pred Cce----EEEEEEEEEE
Confidence 654 4456777764
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.4e-08 Score=87.28 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=61.1
Q ss_pred CCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 397 YPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
.+.|| ++.+.. +.+++.|+|.+|...++..+..|.|+|+...... .+...........+++.+|.|++
T Consensus 5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~----------~~~~~~~~~~~~~~~l~~L~p~t 72 (100)
T d2gysa4 5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATW----------KDSKTETLQNAHSMALPALEPST 72 (100)
T ss_dssp CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCS----------TTSCEEEEESCSEEECCCCCSSC
T ss_pred cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccce----------eceeecccCCceEEEeCCCCCCC
Confidence 45556 676654 5568999999988755556779999998654431 11222234567889999999999
Q ss_pred eEEEEEEEEcCCCC--CCCCCCCceEE
Q psy574 477 TYTFLVRALNSHGL--SAPSPLSDEIV 501 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~--s~~S~~s~~~~ 501 (977)
.|.|+|||.+..|. |.+|.+|..++
T Consensus 73 ~Y~~rVRa~~~~g~~~g~WSeWS~~~~ 99 (100)
T d2gysa4 73 RYWARVRVRTSRTGYNGIWSEWSEARS 99 (100)
T ss_dssp CCEEEEEEEECCTTCCBCCCCCCCCEE
T ss_pred eEEEEEEEEECCCCCCCCccCCCCCcc
Confidence 99999999987774 77888887653
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=4.8e-09 Score=91.11 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=58.0
Q ss_pred eCCCceEEeCCCeEEEEEEecc-c--CceEEEEEECCeeCCCCceEEe------ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 104 RGPKDTTVSASSIIVFECSVGG-D--AVLTVHWKRLGSAMPEDRMSVL------PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g-~--p~~~i~W~k~~~~l~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
..+....+.+|+.++|.|.+.| . |.+.|.|+|++..+........ ....|.|.....+|.|.|+|+|.|..
T Consensus 7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~ 86 (106)
T d1zxqa1 7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL 86 (106)
T ss_dssp EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence 3455567889999999999965 4 5668999999998753211111 11357777778888889999999987
Q ss_pred eeEEEEEEEEEe
Q psy574 175 GKISASATLTVQ 186 (977)
Q Consensus 175 g~~~~~~~L~V~ 186 (977)
+.....+.+.+.
T Consensus 87 ~~~~~~~~~~~s 98 (106)
T d1zxqa1 87 MSRGGNIFHKHS 98 (106)
T ss_dssp GGGTCCEEEEEC
T ss_pred CCCCCeeEeccc
Confidence 654334444443
|
| >d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.8e-08 Score=82.49 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=59.8
Q ss_pred CCCceeEEEEe-cCcEEEEEeeCCCCCC--CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEE
Q psy574 643 GVPQLTDPVLL-NATSVLLKWKPPPVGT--HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 643 ~~P~~v~~~~~-~~~sv~v~W~~p~~~~--~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
.||.||++... +++.+.|+|++|.... .+...+.|+|+|+..+...+...... ..+. ..|.|++.|.|+|||.
T Consensus 3 dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~-~~t~---~~L~p~~~Y~v~VRa~ 78 (94)
T d3d85d3 3 DPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFT-DKTS---ATVICRKNASISVRAQ 78 (94)
T ss_dssp CCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEE-SSSE---EEECCCSSCEEEEEEE
T ss_pred CCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccc-cceE---EEecCCCCEEEEEEEe
Confidence 48999999865 3467999999996332 34568999999998664433333332 2333 3578999999999999
Q ss_pred cCCCcCCCCCceEE
Q psy574 720 NRAGTGPYSRPALL 733 (977)
Q Consensus 720 ~~~G~g~~S~~~~~ 733 (977)
+..|.|.+|+-..+
T Consensus 79 ~~~~~g~WSeWS~~ 92 (94)
T d3d85d3 79 DRYYSSSWSEWASV 92 (94)
T ss_dssp ESSSCCCCCCCEEE
T ss_pred cCCCCCCCccCcCC
Confidence 99999999986544
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.8e-07 Score=84.10 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=63.5
Q ss_pred CCceEEeCCCeEEEEEEecc---cCceEEEEEECCeeC------------------CCCceEEe------ccceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAM------------------PEDRMSVL------PSRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g---~p~~~i~W~k~~~~l------------------~~~~~~~~------~~~~L~I~~v 158 (977)
...+.+.+|++++|.|.+.. .....+.|++.+... ...+.... .+.+|.|.++
T Consensus 9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v 88 (126)
T d1pkoa_ 9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV 88 (126)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence 34578899999999999742 234569999975321 01233332 1358999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 159 RLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
+.+|+|.|+|.+.+..+..++.+.|.|..|+.+
T Consensus 89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~ 121 (126)
T d1pkoa_ 89 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 121 (126)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred chhHCeEEEEEEEECCCEEEEEEEEEEeCCCEE
Confidence 999999999999999888889999999876544
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=8.2e-08 Score=81.66 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=61.3
Q ss_pred eEEeCCCeEEEEEEe-c-ccCceEEEEEECCeeCC-----------CCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 109 TTVSASSIIVFECSV-G-GDAVLTVHWKRLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v-~-g~p~~~i~W~k~~~~l~-----------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+....|++|+|.|.. . ......|.|+|++..+. ..+.....+++|.|.+++.+|+|.|+|.+.+..|
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g 84 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 84 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence 456789999999963 2 23446799999887652 2355566788999999999999999999999888
Q ss_pred eE--EEEEEEEEe
Q psy574 176 KI--SASATLTVQ 186 (977)
Q Consensus 176 ~~--~~~~~L~V~ 186 (977)
.. ++.+.|.|.
T Consensus 85 ~~~~~~~~~L~V~ 97 (98)
T d1hnga1 85 TRILNKALDLRIL 97 (98)
T ss_dssp CEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEE
Confidence 64 677888875
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.1e-07 Score=80.17 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=63.8
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|..+ |..|++|+|.|.. ..+...+.|+|+|..........-.......+.|.+++.+|+|.|+|...+..
T Consensus 4 KPsLsa~P~~~-V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~ 80 (95)
T d1olla1 4 KPFIWAEPHFM-VPKEKQVTICCQG--NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80 (95)
T ss_dssp CCEEEEESCSE-EETTCCEEEEEEC--CTTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEeeCCCc-ccCCCcEEEEEec--CCCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence 68889999665 7899999999987 34567899999997653221100000112369999999999999999988764
Q ss_pred c-eeeeEeEEEEEE
Q psy574 85 G-TRESTDAVLRVL 97 (977)
Q Consensus 85 g-~~~s~~~~l~V~ 97 (977)
. ...|..++|.|.
T Consensus 81 ~~S~~Sd~leL~VT 94 (95)
T d1olla1 81 LWSEPSNLLDLVVT 94 (95)
T ss_dssp EECCCCCCEEEEEE
T ss_pred CccCCCCCEEEEEe
Confidence 3 233666777764
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=5.8e-08 Score=82.03 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=56.9
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-------------CCceEEe-ccceEEEccCccCCCeEEEEEEEeC
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~-------------~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+....|++|+|.|.+. .|.+.|.|++++..+. ..+..+. .+++|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~ 82 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence 45778999999999874 5788999999987652 1222322 3568999999999999999999887
Q ss_pred CeeEEEEEEEEE
Q psy574 174 VGKISASATLTV 185 (977)
Q Consensus 174 ~g~~~~~~~L~V 185 (977)
.+..+ +.|+|
T Consensus 83 ~~t~~--~~l~V 92 (93)
T d1ccza1 83 TDTMK--FFLYV 92 (93)
T ss_dssp CSCEE--EEEEE
T ss_pred CcEEE--EEEEE
Confidence 66543 55554
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=1.4e-07 Score=81.59 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=58.3
Q ss_pred EEeCCCeEEEEEEecccCceEEEEEECCeeC--------------------CCCceEEeccceEEEccCccCCCeEEEEE
Q psy574 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l--------------------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
.+.+|++|.|.|.........+.|+|..... -.+|..+..+++|.|.+++.+|+|.|+|.
T Consensus 10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~ 89 (107)
T d1l6za1 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89 (107)
T ss_dssp SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence 3679999999998533345689999964321 12477777889999999999999999999
Q ss_pred EEeCCee-EEEEEEEEE
Q psy574 170 AENAVGK-ISASATLTV 185 (977)
Q Consensus 170 a~n~~g~-~~~~~~L~V 185 (977)
+.+..+. .++.+.|.|
T Consensus 90 v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 90 MTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEETTEEECCCCEEECC
T ss_pred EEECCCCEEEEEEEEEE
Confidence 9887654 556677766
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.4e-07 Score=77.96 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=59.9
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCc----CeEEecCCCCCceEEEEEEEE
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAST----PTLLLTNLSAGIRYSVSLAAT 719 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~----~~~~l~~L~p~t~Y~~~V~A~ 719 (977)
+|.+|++...+ ..+.|+|++|+ .. .+ ...|.|+|+..+...+....--.+. ..+.+.+|.++..|.|||+|.
T Consensus 6 ~P~nv~~~s~n-~~~~L~W~pp~-~~-g~-~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~ 81 (99)
T d1y6kr1 6 SPPSVWFEAEF-FHHILHWTPIP-QQ-SE-STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAV 81 (99)
T ss_dssp CCSCEEEEEET-TEEEEEECCCT-TC-CT-TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEE
T ss_pred CCCcceEEEEC-CEEEEEEcCCC-Cc-CC-CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEE
Confidence 56799987765 56779999884 22 22 3569999988654444433221122 234578999999999999999
Q ss_pred cCCCcCCCCCce
Q psy574 720 NRAGTGPYSRPA 731 (977)
Q Consensus 720 ~~~G~g~~S~~~ 731 (977)
+..|.|.|++.-
T Consensus 82 n~~g~S~Ws~t~ 93 (99)
T d1y6kr1 82 DGSRHSQWTVTN 93 (99)
T ss_dssp ETTEECCCEECS
T ss_pred cCCCcCCCcccC
Confidence 999999987643
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=9.6e-08 Score=81.53 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEE-Eec-eecCcCeEEEEccCCC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV-RVA-TNVPSPILTVTNLTVG 475 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~-~~~-~~~~~~~~~i~~L~p~ 475 (977)
| +|.++++...+.. .+|+|.+|... ++.. |.+++....... ..|. ... .....+.+++.+|.++
T Consensus 2 P-~P~nv~v~s~n~~-~~L~W~pP~~~-g~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (98)
T d1fyhb1 2 P-TPTNVTIESYNMN-PIVYWEYQIMP-QVPV--FTVEVKNYGVKN---------SEWIDACINISHHYCNISDHVGDPS 67 (98)
T ss_dssp C-CCEEEEEECBSSC-CEEEEECCCCS-SCCE--EEEEEEETTCSS---------SCCEEEEEEESSSEEECGGGCCSTT
T ss_pred c-cCCceEEEEeCCc-EEEEECCCCCC-CCCc--eeEEEEEecccc---------ceeEEeeeecccceeeeEecccCCC
Confidence 5 7889998877654 46999998773 3444 444443332221 1332 222 3344556678899999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceE
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEI 500 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~ 500 (977)
..|.|||+|.|..|.|+++...+++
T Consensus 68 ~~Y~fRV~A~n~~g~S~ws~s~~f~ 92 (98)
T d1fyhb1 68 NSLWVRVKARVGQKESAYAKSEEFA 92 (98)
T ss_dssp SCEEEEEEEEETTEECCCEECCCBC
T ss_pred CEEEEEEEEEcCCcccCCccCCCcE
Confidence 9999999999999999888665544
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=9.4e-07 Score=75.10 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=63.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCc-eEE-EecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLR-LVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~-r~~-~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
=+|.+.+.|.. .|..|++|+|.|.. ..+...+.|+|+|......... ... ......+.|.+++.+|+|.|+|.+.
T Consensus 6 pkPsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~ 82 (99)
T d1ucta1 6 PMPFISAKSSP-VIPLDGSVKIQCQA--IREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR 82 (99)
T ss_dssp CCCCEEESSCS-EEETTCCEEEEECC--CTTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred CCCEEEecCCC-ceeCCCeEEEEEcC--CCCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEE
Confidence 46888999975 58899999999987 3566789999977533211110 001 1123469999999999999999998
Q ss_pred ecCc-eeeeEeEEEEE
Q psy574 82 NVAG-TRESTDAVLRV 96 (977)
Q Consensus 82 n~~g-~~~s~~~~l~V 96 (977)
+... ...|..+.|.|
T Consensus 83 ~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 83 IGHYRFRYSDTLELVV 98 (99)
T ss_dssp ETTTEEEECCCEEEEE
T ss_pred CCCcccCCCCCEEEEe
Confidence 8765 33467777766
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=1.1e-06 Score=76.85 Aligned_cols=76 Identities=20% Similarity=0.415 Sum_probs=55.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCE-E--e--------ecCCCceEEEec--C---cEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGH-P--I--------DFENSKRLRLVD--G---TNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~-~--l--------~~~~~~r~~~~~--~---g~L~I~~v~ 69 (977)
+++.|..+.+.+|++|+|.|..........+.||| .|+ + | ....+.|+.+.. + -.|.|.+++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 56789999999999999999884444456789998 222 1 1 123345666543 2 249999999
Q ss_pred CCCCeEEEEEEEec
Q psy574 70 KTDDGRYQCVVKNV 83 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~ 83 (977)
++|+|.|.|.+...
T Consensus 82 ~~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 82 RNDSGIYLCGAISL 95 (114)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cCCCeEEEEEEEeC
Confidence 99999999988644
|
| >d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.3e-07 Score=76.45 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCCCCCeEEeeC-CCceEEEEEcCCCC---CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccC
Q psy574 398 PGPPTKPTLVNQT-ANGLTLAWSRNNQI---GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLT 473 (977)
Q Consensus 398 p~~P~~~~v~~~~-~~sv~lsW~~p~~~---~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~ 473 (977)
|.||.++.+.... ...+.|+|.+|... .+.-...|.|+|+..+.. .|...... .. +..+|.
T Consensus 2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~-----------~~~~~~~~-~~---t~~~L~ 66 (94)
T d3d85d3 2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKR-----------EKKDRVFT-DK---TSATVI 66 (94)
T ss_dssp CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-----------------CEEEE-SS---SEEEEC
T ss_pred CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCC-----------ccEEeccc-cc---eEEEec
Confidence 7899999987654 46699999999752 223368899999865443 56554322 22 245689
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCce
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
|++.|.|+|||.+..|.|.+|.+|..
T Consensus 67 p~~~Y~v~VRa~~~~~~g~WSeWS~~ 92 (94)
T d3d85d3 67 CRKNASISVRAQDRYYSSSWSEWASV 92 (94)
T ss_dssp CCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred CCCCEEEEEEEecCCCCCCCccCcCC
Confidence 99999999999999999999988754
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=7.6e-07 Score=76.64 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=54.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee-------ecCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l-------~~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .+.-...+.|||. |+ .+ ......|+....+ ..|.|.+++.+|
T Consensus 4 ~tQsP~~ltv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1ospl1 4 MSQSSSSFSVSLGDRVTITCKA-SEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED 82 (107)
T ss_dssp EECCCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred EEeeCCEEEECCCCCEEEEEec-CCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence 4566889999999999999988 3333457999982 21 11 1233456666543 469999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1ospl1 83 VATYFCQQYW 92 (107)
T ss_dssp CSEEEEEECS
T ss_pred CCcEEEeecc
Confidence 9999998753
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.31 E-value=8e-07 Score=76.24 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=53.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEe----------ecCCCceEEEec---CcEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPI----------DFENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l----------~~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .......+.|+| .|+.. ......|+.... +..|.|.+++.+|
T Consensus 4 ltQ~P~s~~~~~G~svtl~C~~-s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D 82 (107)
T d1c5cl1 4 LTQSPSSLSASLGERVSLTCRT-SQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED 82 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEccCCEEEECCCCCEEEEEEe-CCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence 4567889999999999999998 555566799998 33221 112233444332 2469999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1c5cl1 83 FADYYCLQYA 92 (107)
T ss_dssp CSEEEEEECS
T ss_pred CeEEEEecCc
Confidence 9999998654
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=5.5e-07 Score=76.39 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=49.0
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE--ee----------cCCCceEEEec------CcEEEEcCCCCCCCeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--ID----------FENSKRLRLVD------GTNLAIQDSRKTDDGR 75 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~--l~----------~~~~~r~~~~~------~g~L~I~~v~~~D~G~ 75 (977)
.+...+|++|+|.|.. .......+.|++.... +. .....|+.... +.+|+|.+++.+|+|.
T Consensus 3 ~V~~~~G~svtL~C~~-s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~ 81 (97)
T d2nxyb1 3 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (97)
T ss_dssp EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEEEEcCCcEEEEEEE-ecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence 4678899999999998 5566678999985432 11 11234554432 1259999999999999
Q ss_pred EEEEEEe
Q psy574 76 YQCVVKN 82 (977)
Q Consensus 76 Y~C~a~n 82 (977)
|.|.+.+
T Consensus 82 Y~C~v~~ 88 (97)
T d2nxyb1 82 YICEVED 88 (97)
T ss_dssp EEEEETT
T ss_pred EEEEEec
Confidence 9999964
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=9.2e-07 Score=75.94 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=53.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEe----------ecCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPI----------DFENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l----------~~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+++.|..+.+.+|++|+|.|.. .......+.||| .|+.. ......|+..... .+|.|.+++.+|
T Consensus 4 ltQsP~slsv~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (106)
T d1i8ka_ 4 LTQSPASLSVATGEKVTIRCMT-STDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED 82 (106)
T ss_dssp EEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCEEEECCCCCEEEEEEe-CCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence 4567888999999999999987 444455799997 23211 1223445555432 359999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (106)
T d1i8ka_ 83 VGDYYCLQSF 92 (106)
T ss_dssp CEEEEEEECS
T ss_pred CEEEeEecCc
Confidence 9999998653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.29 E-value=9.3e-07 Score=77.56 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=57.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---ee----------cCCCceEEEecC-----cEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---ID----------FENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l~----------~~~~~r~~~~~~-----g~L~I 65 (977)
+++.+.|..+.+.+|++|+|.|..........+.|+| .|+. |- .....|+.+..+ -+|.|
T Consensus 1 ~~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I 80 (116)
T d1tvda_ 1 DKVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVI 80 (116)
T ss_dssp CEEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred CCEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeee
Confidence 4678889999999999999999874444566899997 2221 10 112346665422 26999
Q ss_pred cCCCCCCCeEEEEEEEecC
Q psy574 66 QDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~ 84 (977)
.+++.+|+|.|.|.+....
T Consensus 81 ~~~~~~Dsg~YyCa~~~~~ 99 (116)
T d1tvda_ 81 SPVRTEDSATYYCAFTLPP 99 (116)
T ss_dssp SSCCGGGCEEEEEEEECTT
T ss_pred cCccccccccceeeEecCC
Confidence 9999999999999877543
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.28 E-value=2.1e-06 Score=73.74 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=52.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee-------ecCCCceEEEecCc---EEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVDGT---NLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l-------~~~~~~r~~~~~~g---~L~I~~v~~~ 71 (977)
++.+.|..+.+.+|++|+|.|.. .......+.|||. |+ .| ......++....++ .|.|.+++.+
T Consensus 3 ~vtQ~P~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~ 81 (108)
T d1jhll_ 3 ELTQSPSYLVASPGETITINCRA-SKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPE 81 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred cEEccCCeEEecCCCCEEEEEEc-cCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEec
Confidence 34567889999999999999988 4444567999982 11 11 11123344444333 6999999999
Q ss_pred CCeEEEEEEEe
Q psy574 72 DDGRYQCVVKN 82 (977)
Q Consensus 72 D~G~Y~C~a~n 82 (977)
|+|.|.|.+.+
T Consensus 82 Dsa~YyCA~~~ 92 (108)
T d1jhll_ 82 DFAMYICQQHN 92 (108)
T ss_dssp CCSEEEEEECS
T ss_pred cceEEEEeeCC
Confidence 99999997654
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.28 E-value=1.3e-06 Score=75.35 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=52.9
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+++.|..+.+.+|++|+|.|.. .......+.|||. |+.+. .....|+....+ ..|.|.+++.+|
T Consensus 4 ~tQ~p~~l~v~~G~~vtL~C~~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1j1pl_ 4 LTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EECcCCeEEECCCCCEEEEEEe-cCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence 4577889999999999999987 3444567999982 22110 122345554432 369999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+.+
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1j1pl_ 83 FGMYFCQQAN 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEEEcCC
Confidence 9999997653
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=1e-06 Score=77.03 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=56.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEee-------cCCCceEEEecC-----cEEEEcCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID-------FENSKRLRLVDG-----TNLAIQDS 68 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~-------~~~~~r~~~~~~-----g~L~I~~v 68 (977)
+++.+.|..+.+.+|++|+|.|.. ...+...+.|||.. +.|- .....|+....+ .+|.|.++
T Consensus 1 ~~V~Q~P~~~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~ 79 (114)
T d2cdea1 1 NQVEQSPQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITAS 79 (114)
T ss_dssp CCEEEECSEEEEETTCCCEEEEEE-CCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSC
T ss_pred CccEeeCCEEEEeCCCCEEEEEEE-cCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEccc
Confidence 467888999999999999999998 45566789999821 1111 011234444322 35999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+.+|+|.|.|.+...
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 80 QLSDSASYICVVSDR 94 (114)
T ss_dssp CGGGCSEEEEEEECS
T ss_pred ChhhCcccceeeecC
Confidence 999999999999764
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.23 E-value=1.9e-06 Score=74.06 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=53.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee-------ecCCCceEEEecC---cEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l-------~~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
++++.|..+.+.+|++|+|.|.. ...-...+.|+|. |+ .| ......|+....+ -.|.|.+++++
T Consensus 3 ~~tQ~P~sl~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 81 (107)
T d1tjgl1 3 QLTQSPSSLSASVGDRITITCRA-SQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE 81 (107)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred cEEeeCCEEEECCCCCEEEEEEE-CCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence 45678999999999999999998 4334567899982 22 12 1222345554422 35999999999
Q ss_pred CCeEEEEEEEe
Q psy574 72 DDGRYQCVVKN 82 (977)
Q Consensus 72 D~G~Y~C~a~n 82 (977)
|+|.|.|.+..
T Consensus 82 DsA~YyCa~~~ 92 (107)
T d1tjgl1 82 DFATYYCQQLH 92 (107)
T ss_dssp GCSEEEEEECS
T ss_pred cCceEEEEECc
Confidence 99999997653
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=1.8e-06 Score=74.16 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=51.8
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EEee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--G---HPID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+..+|..+.+.+|++|+|.|.. .+.-...+.|+|. | +.|- .....|+....+ ..|.|.+++++|
T Consensus 3 vltQp~s~~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 81 (106)
T d1lk3l1 3 VLTQPPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADD 81 (106)
T ss_dssp CEECCSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEeeCCeEEECCCCCEEEEEEe-CCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhh
Confidence 3445668999999999999998 4445567999972 2 2221 122345555433 369999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 82 sa~YyCa~~ 90 (106)
T d1lk3l1 82 TAIYFCQQS 90 (106)
T ss_dssp CEEEEEEEC
T ss_pred CCCcccccc
Confidence 999999754
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.22 E-value=2e-06 Score=73.81 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=54.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC---CEE-e--------ecCCCceEEEecC---cEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN---GHP-I--------DFENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~---g~~-l--------~~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
++++.|..+.+.+|++|+|.|.. .......+.|+|. ... + ......|+....+ .+|.|.+++++
T Consensus 2 qltQsP~~l~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 2 ELTQSPSSLSASLGGKVTITCKA-SQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPE 80 (106)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ceECcCCEEEECCCCCEEEEEEc-CCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhccc
Confidence 35677889999999999999987 4455557999982 111 1 1122345554433 36999999999
Q ss_pred CCeEEEEEEEe
Q psy574 72 DDGRYQCVVKN 82 (977)
Q Consensus 72 D~G~Y~C~a~n 82 (977)
|+|.|.|.+..
T Consensus 81 DsA~YyCa~~~ 91 (106)
T d1a0ql1 81 DIATYYCLQYY 91 (106)
T ss_dssp GCSEEEEEECS
T ss_pred CCEeEEEEEeC
Confidence 99999998754
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.4e-06 Score=76.04 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=55.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC----CE-E---ee----------cCCCceEEEecC---cEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN----GH-P---ID----------FENSKRLRLVDG---TNLAI 65 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~----g~-~---l~----------~~~~~r~~~~~~---g~L~I 65 (977)
.+++.|.++++.+|++|+|.|.+........+.|+|. +. . +. .....|+..... ..|.|
T Consensus 2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I 81 (114)
T d1akjd_ 2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL 81 (114)
T ss_dssp CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence 4788999999999999999998844455567999982 21 1 10 112345554432 25999
Q ss_pred cCCCCCCCeEEEEEEEe
Q psy574 66 QDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n 82 (977)
.+++.+|+|.|.|.+..
T Consensus 82 ~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 82 SDFRRENEGYYFCSALS 98 (114)
T ss_dssp SSCCGGGCEEEEEEEEE
T ss_pred ccCCCCCCEEEeEeEcC
Confidence 99999999999999864
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=1.5e-06 Score=76.89 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=58.3
Q ss_pred eecccceEEeCCCcEEEEEECCC---CCCCCeEEEEeC--C----EEe---------e---cCCCceEEEec-----CcE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPR---GHPEPTLVWKKN--G----HPI---------D---FENSKRLRLVD-----GTN 62 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~--g----~~l---------~---~~~~~r~~~~~-----~g~ 62 (977)
...|.++.+..|++|+|.|.... ......|.|+|. + ..+ . ....+|+.+.. +.+
T Consensus 3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 82 (119)
T d1neua_ 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS 82 (119)
T ss_dssp EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence 45688899999999999998521 233458999872 1 111 0 11235777643 246
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce-eeeEeEEEEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT-RESTDAVLRVL 97 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~-~~s~~~~l~V~ 97 (977)
|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.
T Consensus 83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999999999999875432 22344566664
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.22 E-value=2.3e-06 Score=73.76 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=52.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee-------ecCCCceEEEec---CcEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-------DFENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l-------~~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .......+.|||. ++ .| ......|+.... +..|.|.+++.+|
T Consensus 4 ~tQsP~~l~v~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D 82 (107)
T d1kcvl1 4 MTQSPKSMGMSVGEAVTLNCKA-SENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD 82 (107)
T ss_dssp EEESCSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EECcCCEEeECCCCCEEEEEEe-cCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence 4567888999999999999998 4444457999982 21 11 112234554442 2369999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 83 Sa~YyCa~~~ 92 (107)
T d1kcvl1 83 DADYYCGQSY 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CceEEEEecC
Confidence 9999998653
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.2e-06 Score=77.07 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Ee-------ecCCCceEEEecC-----cEEEEcCCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PI-------DFENSKRLRLVDG-----TNLAIQDSRK 70 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l-------~~~~~~r~~~~~~-----g~L~I~~v~~ 70 (977)
..|+.+.+.+|++|+|.|....+. ....+.|+|.. . .+ .....+|+.+..+ .+|.|.+++.
T Consensus 4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~ 83 (116)
T d1xeda_ 4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 83 (116)
T ss_dssp BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence 378899999999999999873332 23467898832 1 11 0122345554432 3699999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcC
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 99 (977)
+|+|.|.|.+... +......+.|+|...
T Consensus 84 ~DsG~Y~C~v~~~-~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 84 DDSGRYKCGLGIN-SRGLSFDVSLEVLEH 111 (116)
T ss_dssp GGCEEEEEEESCG-GGCCEEEEEEEEECC
T ss_pred CCCEEEEEEEEcC-CCCceEeEEEEEECC
Confidence 9999999998644 323344567777643
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.21 E-value=2.1e-06 Score=73.68 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=52.8
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EEe-------ecCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--G---HPI-------DFENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~l-------~~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+++.|..+.+.+|++|+|.|.. .+.-...+.|||. | +.| ......|+....+ ..|.|.+++++|
T Consensus 3 ltQ~P~sl~~~~G~svtL~C~~-~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 81 (106)
T d1op3k1 3 MTQSPSTLSASVGDTITITCRA-SQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDD 81 (106)
T ss_dssp EEEECSEEEECTTCEEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred EeCcCCeEEECCCCCEEEEEEe-CCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccC
Confidence 4577999999999999999988 4444456899983 2 222 1122345544422 359999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 82 sa~YyCa~~~ 91 (106)
T d1op3k1 82 FATYHCQHYA 91 (106)
T ss_dssp CSEEEEEEEC
T ss_pred CCcEeeeeCC
Confidence 9999998654
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.18 E-value=3.9e-06 Score=73.14 Aligned_cols=77 Identities=25% Similarity=0.422 Sum_probs=53.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---e-ecC------CCceEEE--ec---CcEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---I-DFE------NSKRLRL--VD---GTNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l-~~~------~~~r~~~--~~---~g~L~I~~v~ 69 (977)
++.+.|..+.+.+|++|+|.|.. .+.....+.|+|. |+. + ... ...|+.. .. ...|.|.+++
T Consensus 2 ~V~Q~P~~v~v~~G~sv~L~C~~-s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 80 (113)
T d2bnqd1 2 EVTQIPAALSVPEGENLVLNCSF-TDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ 80 (113)
T ss_dssp CEECSSSEEEEETTCCEEEEEEE-SCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred CcEeeCCEEEEcCCCCEEEEEEE-ecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC
Confidence 56788999999999999999998 4555567999982 211 1 000 1122222 21 1269999999
Q ss_pred CCCCeEEEEEEEecC
Q psy574 70 KTDDGRYQCVVKNVA 84 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~ 84 (977)
.+|+|.|.|.+....
T Consensus 81 ~~Dsg~YyCa~~~~~ 95 (113)
T d2bnqd1 81 PGDSATYLCAVRPTS 95 (113)
T ss_dssp GGGCEEEEEEEEESS
T ss_pred CCCCcEEeEeEecCC
Confidence 999999999987554
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=2.1e-06 Score=75.85 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=55.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE------ee--------------cCCCceEEEe-cC--
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP------ID--------------FENSKRLRLV-DG-- 60 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~------l~--------------~~~~~r~~~~-~~-- 60 (977)
|++++.|..+.+.+|++|+|.|.+ .+.....+.|+| .|.. |- .....|+... .+
T Consensus 2 ~~~~~~P~~~~~~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 80 (122)
T d1nezg_ 2 PELRIFPKKMDAELGQKVDLVCEV-LGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN 80 (122)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEE-ESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred CceEEcCCEEEECCCCCEEEEEEE-cCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence 678999999999999999999988 556667899998 1211 10 0112344332 11
Q ss_pred -cEEEEcCCCCCCCeEEEEEEEe
Q psy574 61 -TNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 61 -g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-.|.|.+++.+|+|.|.|.+..
T Consensus 81 ~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEE
T ss_pred EeEEEEcccccCCCEEEEeeEeC
Confidence 2599999999999999998753
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.2e-06 Score=71.72 Aligned_cols=73 Identities=21% Similarity=0.377 Sum_probs=50.0
Q ss_pred ccceEEeCCCcEEEEEECCCCCC-CCeEEEEeC--CEE---e-e------cCCCceEEEec---Cc--EEEEcCCCCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHP-EPTLVWKKN--GHP---I-D------FENSKRLRLVD---GT--NLAIQDSRKTDD 73 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~--g~~---l-~------~~~~~r~~~~~---~g--~L~I~~v~~~D~ 73 (977)
++.+.+.+|++|+|.|..+.... ...+.|+|. +.. | . ....+|+.+.. ++ +|.|.+++.+|+
T Consensus 3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds 82 (108)
T d1hkfa_ 3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS 82 (108)
T ss_dssp CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence 55688999999999998743333 346789882 211 1 1 12234555542 22 599999999999
Q ss_pred eEEEEEEEecC
Q psy574 74 GRYQCVVKNVA 84 (977)
Q Consensus 74 G~Y~C~a~n~~ 84 (977)
|.|.|.+....
T Consensus 83 G~Y~C~v~~~~ 93 (108)
T d1hkfa_ 83 GHYWCRIYRPS 93 (108)
T ss_dssp EEEEEEEECTT
T ss_pred EEEEEEEecCC
Confidence 99999987544
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=2.8e-06 Score=72.99 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=52.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-------cCCCceEEEec---CcEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .......+.|||. +. .|- .....|+.... +..|.|.+++.+|
T Consensus 4 ~tQ~P~sl~~~~G~svtl~C~~-s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D 82 (107)
T d1d5il1 4 MTQSPSSMYASLGERVTITCKA-SQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED 82 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCEEEECCCCCEEEEEEc-CCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence 4567888999999999999988 4444567899972 21 111 11234554442 2469999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|....
T Consensus 83 sa~YyCa~~~ 92 (107)
T d1d5il1 83 MGIYYCLQYD 92 (107)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEeeecc
Confidence 9999997654
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.17 E-value=2e-06 Score=73.51 Aligned_cols=73 Identities=22% Similarity=0.426 Sum_probs=50.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.+ |..+.+.+|++|+|.|.. .......+.|||. |.. +. .....++....+ ..|.|.+++.+|
T Consensus 2 ltQ-p~sl~~~~G~svtl~C~~-~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D 79 (103)
T d8faba1 2 LTQ-PPSVSVSPGQTARITCSA-NALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAED 79 (103)
T ss_dssp BBC-CSEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGG
T ss_pred CCC-CCeEEECCCCCEEEEEEe-CCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhH
Confidence 344 458999999999999998 4444557899982 211 11 111233433322 369999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 80 sa~YyCA~~~ 89 (103)
T d8faba1 80 EADYYCQAWD 89 (103)
T ss_dssp CEEEEEEEEE
T ss_pred CceEEeeecC
Confidence 9999998654
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.17 E-value=2.1e-06 Score=75.10 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=55.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-------cCCCceEEEec-----CcEEEEcCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLVD-----GTNLAIQDS 68 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~-----~g~L~I~~v 68 (977)
+.+.+.|..+.+.+|++|+|.|.. .......+.|||. |+ .|- .....++.+.. ...|.|.++
T Consensus 2 d~V~Q~~~~v~v~~G~~vtL~C~~-~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (115)
T d1lp9e1 2 DSVTQTEGLVTLTEGLPVMLNCTY-QSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSA 80 (115)
T ss_dssp CEEEECCSEEEEETTSCEEECEEE-ECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSC
T ss_pred CCEEcCCCeEEECCCCCEEEEEEE-eCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccc
Confidence 567788999999999999999998 4455667999982 21 110 11133444432 125999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+++|+|.|.|.+...
T Consensus 81 ~~~Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 81 QLSDSALYYCALFLA 95 (115)
T ss_dssp CGGGCEEEEEEEEEC
T ss_pred ccccCccceEEEEcC
Confidence 999999999987654
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.16 E-value=4.6e-06 Score=72.15 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=50.3
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---ee-------cCCCceEEEecC---cEEEEcCCCCCCCeEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---ID-------FENSKRLRLVDG---TNLAIQDSRKTDDGRY 76 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y 76 (977)
|.++.+.+|++|+|.|..........+.||| .|+. |- .....++.+..+ ..|.|.+++.+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 5689999999999999874334455689998 2221 11 112334444432 3599999999999999
Q ss_pred EEEEEec
Q psy574 77 QCVVKNV 83 (977)
Q Consensus 77 ~C~a~n~ 83 (977)
.|.+...
T Consensus 85 yCa~~~~ 91 (110)
T d2esvd1 85 YCIVVRS 91 (110)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 9998643
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.5e-06 Score=77.54 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=57.1
Q ss_pred cceEEeCCCcEEEEEECCC---CCCCCeEEEEeCCE----------------Eee---cCCCceEEEecC------cEEE
Q psy574 13 KSQRVAAGDTALLECGPPR---GHPEPTLVWKKNGH----------------PID---FENSKRLRLVDG------TNLA 64 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~g~----------------~l~---~~~~~r~~~~~~------g~L~ 64 (977)
..+.+.+|++++|.|.+.. ......|.|++... ... ....+|..+..+ .+|+
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 4488999999999998721 11224688987211 010 122356665432 3699
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
|.+++.+|+|.|.|.+.+..+. ....+.|+|.
T Consensus 92 I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL 123 (124)
T ss_dssp ECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred EcccEEccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence 9999999999999999987664 3556777764
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.16 E-value=2.5e-06 Score=73.25 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=51.9
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+++.|..+.+.+|++|+|.|.. ...-...+.|||. |+ .|. .....|+....+ ..|.|.+++++|
T Consensus 4 ltQ~p~~l~~~~G~svtl~C~~-s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D 82 (107)
T d1mexl1 4 MTQSQKFMSTSLGNRVSVTCKA-SQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED 82 (107)
T ss_dssp EECCCSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEcCCCeEEECCCCCEEEEEEe-CCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence 4677888999999999999987 3343456999972 21 111 112345554432 359999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 83 sA~YyCa~~ 91 (107)
T d1mexl1 83 LAEYFCQQY 91 (107)
T ss_dssp CSEEEEEEC
T ss_pred ceeEEEeEC
Confidence 999999764
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.16 E-value=1.7e-06 Score=74.67 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=52.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|..........+.|+|. |+ .|- .....|+....+ ..|.|.+++++|
T Consensus 4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED 83 (108)
T ss_dssp EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence 457799999999999999998733334456899983 22 221 112334444322 259999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 84 sa~YyCa~~~ 93 (108)
T d2fx7l1 84 FAVYYCQQYG 93 (108)
T ss_dssp CSEEEEEECS
T ss_pred cEEEeeecCC
Confidence 9999998753
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.9e-06 Score=73.19 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCc----CeEEEEc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS----PILTVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~i~~ 471 (977)
.+|. |.++++...+ ....|+|++|...++ ...|.|+|+..... .|..+...... ..+.+.+
T Consensus 3 ~lP~-P~nv~~~s~n-~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~-----------~W~~v~~c~~~t~~~~~~~~~~ 67 (99)
T d1y6kr1 3 ELPS-PPSVWFEAEF-FHHILHWTPIPQQSE--STCYEVALLRYGIE-----------SWNSISQCSQTLSYDLTAVTLD 67 (99)
T ss_dssp CCCC-CSCEEEEEET-TEEEEEECCCTTCCT--TCEEEEEEEETTSC-----------CCEEEEEEESSSEEECGGGGTT
T ss_pred cCCC-CCcceEEEEC-CEEEEEEcCCCCcCC--CCEEEEEEEECCCc-----------ceEEEEeeccccccceeeeeee
Confidence 3464 6688876554 467899998877333 46799999876544 78876533332 2335778
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCC
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPL 496 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~ 496 (977)
|.++..|.|||+|.|..|.|.++..
T Consensus 68 l~~~~~Y~fRVrA~n~~g~S~Ws~t 92 (99)
T d1y6kr1 68 LYHSNGYRARVRAVDGSRHSQWTVT 92 (99)
T ss_dssp GGGSSCEEEEEEEEETTEECCCEEC
T ss_pred cCCCCEEEEEEEEEcCCCcCCCccc
Confidence 9999999999999999999888643
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.1e-06 Score=70.88 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=61.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|.. .|..|++|+|.|.. .......+.|+|+|...... +-.-.....+.|.+++.+|+|+|+|......
T Consensus 5 kP~Lsa~P~~-~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~~~~~---~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~ 79 (96)
T d1ucta2 5 KPFLSADRGL-VLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ---HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR 79 (96)
T ss_dssp CCEEEESSCS-EECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS---EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CCEEEEeCCC-ccCCCCeEEEEEeC-CCCCceEEEEEECCcccceE---EcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence 6788899965 69999999999986 22344578999999654222 1111223569999999999999999987543
Q ss_pred c----eeeeEeEEEEE
Q psy574 85 G----TRESTDAVLRV 96 (977)
Q Consensus 85 g----~~~s~~~~l~V 96 (977)
. +..|..++|.|
T Consensus 80 ~p~~~S~~Sd~leL~V 95 (96)
T d1ucta2 80 SPYLWSFPSNALELVV 95 (96)
T ss_dssp STTEECCCCCCEEEEE
T ss_pred CCCCccCCCCCEEEEE
Confidence 2 22356566655
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=4e-06 Score=72.09 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=52.1
Q ss_pred ceEEeCCCcEEEEEECCCCCCC---CeEEEEeCCEEee----------cCCCceEEEecC--cEEEEcCCCCCCCeEEEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHPID----------FENSKRLRLVDG--TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~---~~v~W~k~g~~l~----------~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C 78 (977)
.+++..|++|+|.|........ ..+.|.+++..+. .....|+.+... .+|.|.+++.+|+|.|.|
T Consensus 3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C 82 (105)
T d1dr9a1 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (105)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence 4789999999999987322221 4688999886652 112345555543 479999999999999999
Q ss_pred EEEecCc
Q psy574 79 VVKNVAG 85 (977)
Q Consensus 79 ~a~n~~g 85 (977)
.+.+..+
T Consensus 83 ~V~~~~~ 89 (105)
T d1dr9a1 83 VVLKYEK 89 (105)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9986543
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.12 E-value=2.3e-06 Score=72.23 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=58.8
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.+.+.|. ..|..|++|+|.|.. ..+...+.|+|+|........ .-.... ...+.|..+...|+|.|+|.....
T Consensus 6 kPsLsa~P~-~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~ 81 (99)
T d1nkra2 6 KPSLSAQPG-PTVLAGENVTLSCSS--RSSYDMYHLSREGEAHERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFGSFH 81 (99)
T ss_dssp CCEEEEESC-SEECTTCEEEEEEEE--SSCCSEEEEEETTCSSCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred CCEEEEeCC-CcccCCCeEEEEECC--CCCccEEEEEECCCccccEEE-ccccCCccEEEEEeccccccCEEEEEEeecC
Confidence 688899995 468999999999987 456678999999865421110 011111 124678888899999999987654
Q ss_pred Cc----eeeeEeEEEEE
Q psy574 84 AG----TRESTDAVLRV 96 (977)
Q Consensus 84 ~g----~~~s~~~~l~V 96 (977)
.. +..|....|.|
T Consensus 82 ~~p~~wS~~SdpLeL~V 98 (99)
T d1nkra2 82 DSPYEWSKSSDPLLVSV 98 (99)
T ss_dssp TEEEEECCCCCCEEEEE
T ss_pred CCCCCccCCCCCEEEEE
Confidence 32 12245555544
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.12 E-value=7.8e-06 Score=71.42 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=51.6
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-----CEEee----c-----------CCCceEEEec-----CcEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-----GHPID----F-----------ENSKRLRLVD-----GTNL 63 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-----g~~l~----~-----------~~~~r~~~~~-----~g~L 63 (977)
.+.|..+.+.+|++|+|.|.+........+.|+|. ++.+. . ....|+.+.. ...|
T Consensus 2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (115)
T d2atpb1 2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL 81 (115)
T ss_dssp EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence 46788999999999999999833345567999973 33220 0 0123433322 2369
Q ss_pred EEcCCCCCCCeEEEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.+++.+|+|.|.|.+.
T Consensus 82 ~I~~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 82 SIMNVKPEDSDFYFCATV 99 (115)
T ss_dssp EECSCCGGGCEEEEEEEE
T ss_pred eecccCCCCCcEEEEeEc
Confidence 999999999999999875
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.12 E-value=4.6e-06 Score=72.98 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=53.7
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe----e-------cCCCceEEEec---C--cEEEEcCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI----D-------FENSKRLRLVD---G--TNLAIQDS 68 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l----~-------~~~~~r~~~~~---~--g~L~I~~v 68 (977)
++++.|..+.+.+|++|+|.|..........+.|||. |+.+ . ....+|+.+.. + ..|.|.++
T Consensus 1 ~VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (115)
T d1fo0a_ 1 KVTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT 80 (115)
T ss_dssp CEECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC
T ss_pred CeEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCC
Confidence 3567888999999999999998744555567899982 2111 0 01113343332 1 35999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+.+|+|.|.|.+...
T Consensus 81 ~~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 81 QIEDSAVYFCAMRGD 95 (115)
T ss_dssp CGGGCEEEEEEEECC
T ss_pred CccccccccceeecC
Confidence 999999999998654
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=4e-06 Score=74.53 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=58.7
Q ss_pred CceEEeCCCeEEEEEEecccC----ceEEEEEECCeeC----------------------CCCceEEec------cceEE
Q psy574 107 KDTTVSASSIIVFECSVGGDA----VLTVHWKRLGSAM----------------------PEDRMSVLP------SRSLQ 154 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l----------------------~~~~~~~~~------~~~L~ 154 (977)
..+.+.+|++++|.|.+...+ ...+.|++..... ..+|..+.. +.+|+
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 345788999999999985432 3468998742111 013334331 24799
Q ss_pred EccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|.+++.+|+|.|.|.+.+..+.....+.|+|.
T Consensus 92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 99999999999999999998888888888875
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.11 E-value=2.5e-06 Score=74.56 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=53.7
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---ee----------cCCCceEEEecCc---EEEEcCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---ID----------FENSKRLRLVDGT---NLAIQDS 68 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l~----------~~~~~r~~~~~~g---~L~I~~v 68 (977)
++++.|..+.+.+|++|+|.|..........+.||| .|.. |- .....++.....+ .|.|.++
T Consensus 2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 81 (114)
T d2ak4d1 2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS 81 (114)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence 567889999999999999999864444555789998 2221 10 1112223333222 6999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+.+|+|.|.|.+...
T Consensus 82 ~~~Dsg~YyCa~~~~ 96 (114)
T d2ak4d1 82 QVVDSAVYFCALSGF 96 (114)
T ss_dssp CGGGCEEEEEEEECS
T ss_pred ccccCCCceEeCCCC
Confidence 999999999987654
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.11 E-value=4.5e-06 Score=72.06 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=52.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EEee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--G---HPID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .+.-...+.|||. | +.|. .....|+....+ ..|.|.+++.+|
T Consensus 6 ltQsP~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D 84 (109)
T d1bwwa_ 6 MTQSPSSLSASVGDRVTITCQA-SQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED 84 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCEEEECCCCCEEEEEEe-cCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence 3456888999999999999998 4444457899982 1 1221 122345554432 259999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 85 sa~YyCA~~~ 94 (109)
T d1bwwa_ 85 IATYYCQQYQ 94 (109)
T ss_dssp CEEEEEEECS
T ss_pred CceEEEeecC
Confidence 9999998654
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.07 E-value=5.9e-06 Score=71.41 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=51.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCC---CeEEEEeC--CEE----ee------cCCCceEEEecC---cEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPE---PTLVWKKN--GHP----ID------FENSKRLRLVDG---TNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~---~~v~W~k~--g~~----l~------~~~~~r~~~~~~---g~L~I~~v~ 69 (977)
+++.|..+.+.+|++|+|.|....+... ..+.|||. |+. +. .....|+..... ..|.|.+++
T Consensus 4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~ 83 (111)
T d2gsia1 4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE 83 (111)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence 4577989999999999999976333222 34899982 221 11 112345554432 369999999
Q ss_pred CCCCeEEEEEEEe
Q psy574 70 KTDDGRYQCVVKN 82 (977)
Q Consensus 70 ~~D~G~Y~C~a~n 82 (977)
++|+|.|.|.+..
T Consensus 84 ~~DsA~YyCa~~~ 96 (111)
T d2gsia1 84 EEDAATYYCSHIR 96 (111)
T ss_dssp GGGCEEEEEEECS
T ss_pred ccCCceEEEEECC
Confidence 9999999997654
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.05 E-value=8.9e-06 Score=70.26 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=53.7
Q ss_pred ceecccceEEeCCCcEEEEEECCC-CCCCCeEEEEeC--C---EEeecCCCceEEEec--C---cEEEEcCCCCCCCeEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKN--G---HPIDFENSKRLRLVD--G---TNLAIQDSRKTDDGRY 76 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~--g---~~l~~~~~~r~~~~~--~---g~L~I~~v~~~D~G~Y 76 (977)
+.+.|..+.+.+|++++|.|.... ......+.|||. | +.+ ....+|+.... . .+|.|.+++.+|+|.|
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~-~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Y 80 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES-ISKGGRYVETVNSGSKSFSLRINDLTVEDGGTY 80 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeee-eccCCcEeeEEecCCceeeeEecCCcCccCEEE
Confidence 567899999999999999998732 234567999982 1 122 22334554332 1 2699999999999999
Q ss_pred EEEEEec
Q psy574 77 QCVVKNV 83 (977)
Q Consensus 77 ~C~a~n~ 83 (977)
.|.+...
T Consensus 81 yCA~~~~ 87 (112)
T d1sq2n_ 81 RCGLGVA 87 (112)
T ss_dssp EEEECBT
T ss_pred eEEEecC
Confidence 9987654
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4.2e-06 Score=69.48 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=60.0
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|.. .|..|++|+|.|.. ..+...+.|+|+|...... +-.-.....+.|.+++.+|+|.|+|......
T Consensus 4 kPsLsa~P~~-~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~~---~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~ 77 (93)
T d1olla2 4 TPTLSVHPGP-EVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ---RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 77 (93)
T ss_dssp CCEEEEESCS-EEETTCEEEEEEEC--SSSCSEEEEEEESSSCEEE---EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred CCEEEEeCCC-cccCCCcEEEEECC--CCCCCEEEEEECCCcccee---ecCCCceeEEEecccChhcCceEEEEeECCC
Confidence 6888899964 58999999999987 4566789999987654221 1111123569999999999999999754322
Q ss_pred c--eeeeEeEEEEEE
Q psy574 85 G--TRESTDAVLRVL 97 (977)
Q Consensus 85 g--~~~s~~~~l~V~ 97 (977)
. +..|....|.|.
T Consensus 78 ~~wS~~SdpLeL~Vt 92 (93)
T d1olla2 78 HAWSFPSEPVKLLVT 92 (93)
T ss_dssp TEECCCCCCEEEEEE
T ss_pred CCcCCCCCCEEEEee
Confidence 1 122555555553
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.04 E-value=5.3e-06 Score=72.48 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCE---Eee----------cCCCceEEEecC---cEEEEcCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGH---PID----------FENSKRLRLVDG---TNLAIQDS 68 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~---~l~----------~~~~~r~~~~~~---g~L~I~~v 68 (977)
.+.+.|..+.+.+|++|+|.|.. .......+.|+| .|+ .|- .....+.....+ ..|.|.++
T Consensus 2 sV~Q~~~~v~v~~G~svtl~C~~-~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (115)
T d1i9ea_ 2 SVTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASV 80 (115)
T ss_dssp EEECCCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSC
T ss_pred CEEcCCCeEEECCCCCEEEEEEE-cCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccc
Confidence 35667788999999999999987 344456788997 221 111 011122232222 35999999
Q ss_pred CCCCCeEEEEEEEe
Q psy574 69 RKTDDGRYQCVVKN 82 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n 82 (977)
+.+|+|.|.|.+..
T Consensus 81 ~~~Dsg~YyCa~~~ 94 (115)
T d1i9ea_ 81 HWSDSAVYFCAVSG 94 (115)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred cccccceecccccC
Confidence 99999999998764
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.03 E-value=7.9e-06 Score=70.81 Aligned_cols=74 Identities=24% Similarity=0.392 Sum_probs=50.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee---------cCCCceEEEecC---cEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID---------FENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~---------~~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
+.+.|..+.+.+|++|+|.|.. ...-...+.|||. |+. +- .....+...... .+|.|.+++.
T Consensus 2 V~Q~P~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (110)
T d1u3ha1 2 VRQSPQSLTVWEGETAILNCSY-ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP 80 (110)
T ss_dssp EECSCSSEEEETTSCEEEEEEE-CCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT
T ss_pred cEecCCEEEEcCCCCEEEEEEe-cCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC
Confidence 4667889999999999999987 3334456899982 221 10 111112222221 2599999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 81 ~Dsa~YyCa~~~ 92 (110)
T d1u3ha1 81 GDSATYFCAASA 92 (110)
T ss_dssp TSCSEEEECCEE
T ss_pred CCceeEeeeecC
Confidence 999999998764
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.02 E-value=7.1e-06 Score=70.96 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=51.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEe--CCEE---e-e------cCCCceEEEecC---cEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKK--NGHP---I-D------FENSKRLRLVDG---TNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k--~g~~---l-~------~~~~~r~~~~~~---g~L~I~~v~ 69 (977)
+++.|..+.+.+|++|+|.|....+.+ ...+.||| .|+. | . .....|+....+ ..|.|.+++
T Consensus 4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 83 (111)
T d1j05a_ 4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE 83 (111)
T ss_dssp EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC
T ss_pred EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc
Confidence 456788899999999999998633222 23489998 2321 1 0 112345554433 269999999
Q ss_pred CCCCeEEEEEEEe
Q psy574 70 KTDDGRYQCVVKN 82 (977)
Q Consensus 70 ~~D~G~Y~C~a~n 82 (977)
.+|+|.|.|.+.+
T Consensus 84 ~~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 84 ADDVATYYCQQTN 96 (111)
T ss_dssp GGGCEEEEEEECS
T ss_pred cccCccEEEeecC
Confidence 9999999998754
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=2.9e-06 Score=71.18 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=61.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|.. .|..|++|+|.|.. ..+...+.++|+|..........-.......+.|.+++.+|+|.|+|......
T Consensus 4 kP~Lsa~Ps~-~V~~G~~VTL~C~~--~~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~ 80 (96)
T d1ugna1 4 KPTLWAEPGS-VITQGSPVTLRCQG--GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 80 (96)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEEC--CTTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEEEeECCC-ccCCCCcEEEEEeC--CCCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCCC
Confidence 6888999974 48999999999987 35566788999886532111000001124579999999999999999986442
Q ss_pred c--eeeeEeEEEEEE
Q psy574 85 G--TRESTDAVLRVL 97 (977)
Q Consensus 85 g--~~~s~~~~l~V~ 97 (977)
. ...|...+|.|.
T Consensus 81 ~~~S~~Sd~leL~Vt 95 (96)
T d1ugna1 81 AGRSESSDPLELVVT 95 (96)
T ss_dssp TEECCCCCCEEEEEE
T ss_pred CCccccCCCEEEEEe
Confidence 1 223555566653
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.00 E-value=1.6e-05 Score=68.72 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=49.6
Q ss_pred cccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCC--E---Eee-------cCCCceEEEec---CcEEEEcCCCCCCCe
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRKTDDG 74 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g--~---~l~-------~~~~~r~~~~~---~g~L~I~~v~~~D~G 74 (977)
+|..+.+.+|++|+|.|.+.... ....+.||+.. + .|. .....|+.... +..|.|.+++.+|+|
T Consensus 6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA 85 (114)
T d2rhea_ 6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA 85 (114)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence 44479999999999999873322 34678999831 1 111 11233444432 246999999999999
Q ss_pred EEEEEEEe
Q psy574 75 RYQCVVKN 82 (977)
Q Consensus 75 ~Y~C~a~n 82 (977)
.|.|.+..
T Consensus 86 ~YyCA~~~ 93 (114)
T d2rhea_ 86 DYYCAAWN 93 (114)
T ss_dssp EEEEEEEE
T ss_pred eEEEeecC
Confidence 99998764
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.00 E-value=7.5e-06 Score=71.10 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred ceecccceEEeCCCcEEEEEECCC-CCCCCeEEEEe--CCE---EeecCCCceEEEecC-----cEEEEcCCCCCCCeEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKK--NGH---PIDFENSKRLRLVDG-----TNLAIQDSRKTDDGRY 76 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k--~g~---~l~~~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y 76 (977)
+.+.|..+.+.+|++|+|.|.... ......+.|+| .|. .+ ....+|+....+ -.|.|.+++.+|+|.|
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y 81 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQS-ISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY 81 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEE-CCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceee-eeecccccceeECCCCceeeeecccccCCcceE
Confidence 567899999999999999998732 23556799997 222 12 223344443321 2699999999999999
Q ss_pred EEEEEe
Q psy574 77 QCVVKN 82 (977)
Q Consensus 77 ~C~a~n 82 (977)
.|.+..
T Consensus 82 yCa~~~ 87 (113)
T d1vesa_ 82 KCQAFY 87 (113)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 999864
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.00 E-value=7.6e-06 Score=70.37 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=53.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee-e------cCCCceEEEecC---cEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI-D------FENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l-~------~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
++++.|..+.+.+|++|+|.|.. .......+.|||. |+ .| . .....|+....+ ..|.|.+++++
T Consensus 3 ~ltQsP~~l~~~~G~svtL~C~~-s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~ 81 (109)
T d1mqkl_ 3 ELTQTPVSLSASVGETVTITCRA-SENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPE 81 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CEECcCCEEEECCCCCEEEEEEe-CCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccccc
Confidence 34567999999999999999988 4444556999982 22 11 1 112344544322 35999999999
Q ss_pred CCeEEEEEEEe
Q psy574 72 DDGRYQCVVKN 82 (977)
Q Consensus 72 D~G~Y~C~a~n 82 (977)
|+|.|.|.+..
T Consensus 82 DSa~YyCA~~~ 92 (109)
T d1mqkl_ 82 DFGSYYCQHHY 92 (109)
T ss_dssp GCEEEEEEECS
T ss_pred CCeeEEEeeeC
Confidence 99999998763
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.00 E-value=6.4e-06 Score=71.93 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=52.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee--------cCCCceEEEec--C---cEEEEcCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID--------FENSKRLRLVD--G---TNLAIQDS 68 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~--------~~~~~r~~~~~--~---g~L~I~~v 68 (977)
.+.+.|..+.+.+|++|+|.|.. ...-...+.|||. |+ .|- .....|+.... . -.|.|.++
T Consensus 2 ~vtQ~p~~v~~~~G~~vtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 80 (115)
T d1j8hd1 2 SVTQLGSHVSVSEGALVLLRCNY-SSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSA 80 (115)
T ss_dssp EEECSCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSC
T ss_pred CEEcCCCeEEEcCCCCEEEEEEe-CCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccc
Confidence 45677889999999999999988 4444567999982 21 111 01112333321 1 25999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+.+|+|.|.|.+...
T Consensus 81 ~~~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 81 HMSDAAEYFCAVSES 95 (115)
T ss_dssp CGGGCEEEEEEEESS
T ss_pred cccCCccceeeecCC
Confidence 999999999998754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.99 E-value=1.2e-06 Score=75.30 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=51.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEe----------ecCCCceEEEec---CcEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPI----------DFENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l----------~~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++|+|.|.. .......+.||| .|+.+ ......|+.... +..|.|.+++++|
T Consensus 4 ltQsP~s~~~~~G~~vtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 82 (107)
T d3cx5k1 4 LTQTPVSLAASLGDRVTISCRA-SQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED 82 (107)
T ss_dssp EEEESTTCCBCSSSCCEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred EECcCCEEEECCCCCEEEEEEc-CCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence 4567889999999999999987 455556799998 22211 111123333222 2369999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 83 sa~YyCa~~ 91 (107)
T d3cx5k1 83 IATYFCQHH 91 (107)
T ss_dssp CSEEEEEEC
T ss_pred CCcEEeeeC
Confidence 999999754
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.97 E-value=1.7e-05 Score=68.97 Aligned_cols=75 Identities=17% Similarity=0.350 Sum_probs=51.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---e---------ecCCCceEEEecC---cEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---I---------DFENSKRLRLVDG---TNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l---------~~~~~~r~~~~~~---g~L~I~~v~ 69 (977)
.+.+.|..+.+.+|++|+|.|....+ ...+.|||. |+. + ......++.+... ..|.|.+++
T Consensus 2 ~l~Q~P~~~~~~~G~svtl~C~~s~~--~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 79 (115)
T d1ogad1 2 LLEQSPQFLSIQEGENLTVYCNSSSV--FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQ 79 (115)
T ss_dssp CCEEECSEEEEETTCCEEEEEECSSC--CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCC
T ss_pred ceEeCCCeEEECCCCCEEEEEEECCC--CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCC
Confidence 45677889999999999999998433 347999982 211 1 0111222233322 369999999
Q ss_pred CCCCeEEEEEEEec
Q psy574 70 KTDDGRYQCVVKNV 83 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~ 83 (977)
.+|+|.|.|.+...
T Consensus 80 ~~Dsa~YyCa~~~~ 93 (115)
T d1ogad1 80 PGDTGLYLCAGAGS 93 (115)
T ss_dssp GGGCEEEEEEEECT
T ss_pred ccceeeEcccccCC
Confidence 99999999987644
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.96 E-value=2.5e-05 Score=67.51 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=52.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee---c----CCCceEEE--ecC---cEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID---F----ENSKRLRL--VDG---TNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~---~----~~~~r~~~--~~~---g~L~I~~v~ 69 (977)
++.+.|..+.+.+|++|+|.|.. .......+.||+. |+ .|- . ....|+.. ... .+|.|.+++
T Consensus 2 ~v~Q~p~s~~~~~G~svtl~C~~-s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (111)
T d1bd2d1 2 QVKQNSPSLSVQEGRISILNCDY-TNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ 80 (111)
T ss_dssp CEECCCSEEEEETTSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred ceEccCCEEEEcCCCCEEEEEEe-CCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc
Confidence 46778999999999999999987 4445567899982 21 110 0 01123332 222 369999999
Q ss_pred CCCCeEEEEEEEe
Q psy574 70 KTDDGRYQCVVKN 82 (977)
Q Consensus 70 ~~D~G~Y~C~a~n 82 (977)
.+|+|.|.|.+..
T Consensus 81 ~~Dsa~YyCa~~~ 93 (111)
T d1bd2d1 81 PGDSAVYFCAAME 93 (111)
T ss_dssp GGGCEEEEEEEES
T ss_pred ccccEEEEeeccC
Confidence 9999999998764
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.96 E-value=1.2e-05 Score=69.01 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCC--CeEEEEe---CCEEe---------ecCCCceEEEec---CcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKK---NGHPI---------DFENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k---~g~~l---------~~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+.+ |..+.+.+|++|+|.|....+... ..+.|+| +..+. ......|+.... +..|.|.+++.
T Consensus 4 ~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~ 82 (110)
T d1oaql_ 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT 82 (110)
T ss_dssp EEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG
T ss_pred Eee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc
Confidence 344 447899999999999988433332 2488998 22221 112234555443 23699999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCa~~~ 94 (110)
T d1oaql_ 83 EDEAIYFCALWY 94 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred cccEeEEEEccc
Confidence 999999998764
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.95 E-value=2.8e-05 Score=67.48 Aligned_cols=73 Identities=18% Similarity=0.355 Sum_probs=51.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEee-------------cCCCceEEEec----CcEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPID-------------FENSKRLRLVD----GTNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l~-------------~~~~~r~~~~~----~g~L~I~~v 68 (977)
+++.|..+.+.+|++|+|.|....+. ..+.||| .|+... .....|+.... +..|.|.++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 79 (113)
T d2ntsp1 2 VTQTPRYLIKTRGQQVTLSCSPISGH--RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTL 79 (113)
T ss_dssp CEEECSEEEEETTCCEEEEEECSTTC--CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred eEeCCCeEEECCCCCEEEEEEECCCC--CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCC
Confidence 35678889999999999999974433 5789998 222111 11223333322 236999999
Q ss_pred CCCCCeEEEEEEEe
Q psy574 69 RKTDDGRYQCVVKN 82 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n 82 (977)
+++|+|.|.|.+..
T Consensus 80 ~~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 80 ELGDSALYLCASSL 93 (113)
T ss_dssp CGGGCEEEEEEEES
T ss_pred CcccceeeeeeeeC
Confidence 99999999998764
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=2.1e-05 Score=69.27 Aligned_cols=84 Identities=17% Similarity=0.389 Sum_probs=61.0
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc--Cee-----eee-cCC-----------CccccEEEEEccCC
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE--GNR-----SLI-YPG-----------DRVDNIQAEITSDG 248 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--g~~-----~~~-~~~-----------~~~~~~~~~~~~~g 248 (977)
+|.+...|....+.+|++++|.|.+.+.....+.|++. |.. .++ ... ....++......+.
T Consensus 1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 80 (122)
T d1nezg_ 1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN 80 (122)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence 46788889999999999999999998877778999883 221 111 110 11345665554444
Q ss_pred ceEEEEeecccCCCCeEEEEEEEc
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
...|+|.+++.+|+|.|. |.+..
T Consensus 81 ~~~L~I~~~~~~Dsg~Yy-Ca~~~ 103 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYF-CSVIS 103 (122)
T ss_dssp EEEEEESSCCGGGCEEEE-EEEEE
T ss_pred EeEEEEcccccCCCEEEE-eeEeC
Confidence 468999999999999999 97653
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.95 E-value=1.6e-05 Score=67.83 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=49.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+++.|..+.+.+|++|+|.|....+ ...+.|||. ++ .+. .....++..... -+|.|.+++.+|
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D 80 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSASSS--VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETED 80 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEESSC--CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCCC--CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCccc
Confidence 4678999999999999999987332 345799982 11 110 112233333322 369999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 81 sa~YyCa~~ 89 (104)
T d1yqvl1 81 AATYYCQQW 89 (104)
T ss_dssp CEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999754
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=1.6e-05 Score=69.85 Aligned_cols=85 Identities=15% Similarity=0.356 Sum_probs=57.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecc----cCceEEEEEECCe--e----C---------------CCCceEEe-----ccc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGG----DAVLTVHWKRLGS--A----M---------------PEDRMSVL-----PSR 151 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g----~p~~~i~W~k~~~--~----l---------------~~~~~~~~-----~~~ 151 (977)
+...|..+.+..|++++|.|.+.. .....+.|+|... . + -.+|..+. .+.
T Consensus 2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 81 (119)
T d1neua_ 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG 81 (119)
T ss_dssp EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence 345677889999999999998732 2345799987421 0 0 01344443 235
Q ss_pred eEEEccCccCCCeEEEEEEEeCCe--eEEEEEEEEEe
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVG--KISASATLTVQ 186 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g--~~~~~~~L~V~ 186 (977)
+|.|.+++.+|+|.|.|.+.+..+ .....+.|.|.
T Consensus 82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 799999999999999999987543 24455677664
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.93 E-value=2.6e-05 Score=67.40 Aligned_cols=73 Identities=23% Similarity=0.451 Sum_probs=52.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---e-----------ecCCCceEEEecC----cEEEEcC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---I-----------DFENSKRLRLVDG----TNLAIQD 67 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l-----------~~~~~~r~~~~~~----g~L~I~~ 67 (977)
+.+.|..+.+.+|++|+|.|....+ ...+.|||. |+. | ......|+..... ..|.|.+
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~ 79 (111)
T d2esve1 2 VTQFPSHSVIEKGQTVTLRCDPISG--HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQP 79 (111)
T ss_dssp CEEECSEEEEETTCCEEEEEECCTT--CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESS
T ss_pred cEECCCEEEECCCCCEEEEEEECCC--CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECC
Confidence 3567889999999999999987333 357999972 211 1 0112345555432 3699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++.+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (111)
T d2esve1 80 AELEDSGVYFCASSQ 94 (111)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred cccCCCceEEEeeeC
Confidence 999999999998754
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.93 E-value=2.1e-05 Score=68.00 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=51.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCC----CCCCeEEEEeC--CEE---e-------ecCCCceEEEecC---cEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKN--GHP---I-------DFENSKRLRLVDG---TNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~--g~~---l-------~~~~~~r~~~~~~---g~L~I~~v 68 (977)
+++.|..+.+.+|++|+|.|....+ .....+.||+. |+. | ......|+....+ ..|.|.++
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~ 84 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 84 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence 4567889999999999999987322 22356899982 211 1 1222345554433 36999999
Q ss_pred CCCCCeEEEEEEE
Q psy574 69 RKTDDGRYQCVVK 81 (977)
Q Consensus 69 ~~~D~G~Y~C~a~ 81 (977)
+.+|+|.|.|...
T Consensus 85 ~~~DsavYyCa~~ 97 (113)
T d1n4xl_ 85 EAEDLGIYYCFQG 97 (113)
T ss_dssp CGGGCEEEEEEEC
T ss_pred CcccCEEEEEEEC
Confidence 9999999999654
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.93 E-value=1.6e-05 Score=68.73 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=50.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCCC----CCCeEEEEeC--CEE---e-------ecCCCceEEEecC---cEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGH----PEPTLVWKKN--GHP---I-------DFENSKRLRLVDG---TNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~----P~~~v~W~k~--g~~---l-------~~~~~~r~~~~~~---g~L~I~~v 68 (977)
+++.|..+.+.+|++|+|.|....+. ....+.|++. |+. + ......|+....+ ..|.|.++
T Consensus 4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~ 83 (112)
T d1mjul1 4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV 83 (112)
T ss_dssp EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence 45668889999999999999873322 2456899872 221 1 1122345544433 25999999
Q ss_pred CCCCCeEEEEEE
Q psy574 69 RKTDDGRYQCVV 80 (977)
Q Consensus 69 ~~~D~G~Y~C~a 80 (977)
+.+|+|.|.|..
T Consensus 84 ~~~DsAvYyCa~ 95 (112)
T d1mjul1 84 EAEDVGVYYCLQ 95 (112)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccCCceEEEEe
Confidence 999999999954
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.5e-05 Score=67.51 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=45.4
Q ss_pred ceEEeCCCcEEEEEECCCC--CCCCe--EEEEeCCEE-ee-------------cCCCceEEEe-cCcEEEEcCCCCCCCe
Q psy574 14 SQRVAAGDTALLECGPPRG--HPEPT--LVWKKNGHP-ID-------------FENSKRLRLV-DGTNLAIQDSRKTDDG 74 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g--~P~~~--v~W~k~g~~-l~-------------~~~~~r~~~~-~~g~L~I~~v~~~D~G 74 (977)
.+.+..|++|+|.|..... .+... +.|++++.. +. .....|.... .+.+|.|.+++.+|+|
T Consensus 3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G 82 (110)
T d1ncna_ 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG 82 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence 4788999999999987221 22222 445554322 11 1123344443 3568999999999999
Q ss_pred EEEEEEEec
Q psy574 75 RYQCVVKNV 83 (977)
Q Consensus 75 ~Y~C~a~n~ 83 (977)
.|.|.+...
T Consensus 83 ~Y~C~V~~~ 91 (110)
T d1ncna_ 83 LYQCIIHHK 91 (110)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEec
Confidence 999999644
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.93 E-value=2.5e-05 Score=67.35 Aligned_cols=74 Identities=14% Similarity=0.345 Sum_probs=51.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEe---e----------cC-CCceEEEe---cCcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPI---D----------FE-NSKRLRLV---DGTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l---~----------~~-~~~r~~~~---~~g~L~I~~ 67 (977)
.+.+.|..+.+.+|++|+|.|....+ ...+.||| .|+.. - .. .+.+.... .+..|.|.+
T Consensus 3 ~V~Q~P~~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 80 (110)
T d2aq2a1 3 AVTQSPRNKVAVTGEKVTLSCQQTNN--HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES 80 (110)
T ss_dssp SEEEECSEEEECTTCCEEEEEEESSC--CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred CEEEeCCeEEEcCCCCEEEEEEECCC--cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence 46678999999999999999987433 45799998 22211 0 11 11222221 124699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++.+|+|.|.|.+..
T Consensus 81 ~~~~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 81 ATPSQTSVYFCASGG 95 (110)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCHhhCEEEEEeeCC
Confidence 999999999998764
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.92 E-value=2.1e-05 Score=68.74 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=55.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEee---------------cCCCceEEEecC----cEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPID---------------FENSKRLRLVDG----TNLAI 65 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l~---------------~~~~~r~~~~~~----g~L~I 65 (977)
.+.+.|..+.+.+|++|+|.|.. .+.....+.||| .|+.+. .....|+.+.+. ..|.|
T Consensus 3 ~v~Q~P~~~~~~~G~~v~L~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i 81 (118)
T d2ij0c1 3 VVSQHPSMVIVKSGTSVKIECRS-LDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTV 81 (118)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-CSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEE
T ss_pred cEEEcCCeEEEcCCCCEEEEEEE-cCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccc
Confidence 35677888999999999999987 444556899998 222110 112345655432 25999
Q ss_pred cCCCCCCCeEEEEEEEec
Q psy574 66 QDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~ 83 (977)
.+++++|+|.|.|.+...
T Consensus 82 ~~~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 82 TSAHPEDSGFYVCSALAG 99 (118)
T ss_dssp CSCCGGGCEEEEEEEECS
T ss_pred cccccccCceEEEEEecC
Confidence 999999999999998654
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=9.7e-06 Score=71.00 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=58.4
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc---CceEEEEEECCeeC---------------CCCceEEe-----ccceEEEccCc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD---AVLTVHWKRLGSAM---------------PEDRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~---p~~~i~W~k~~~~l---------------~~~~~~~~-----~~~~L~I~~v~ 159 (977)
+..|+.+.+.+|++|+|.|..... ....+.|+|....- ..++..+. .+.+|.|.+++
T Consensus 3 it~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~ 82 (116)
T d1xeda_ 3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 82 (116)
T ss_dssp SBCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ccCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC
Confidence 346788899999999999987422 23457898853210 12333332 22479999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
.+|+|.|.|.+..........+.|+|...
T Consensus 83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 83 QDDSGRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp GGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred cCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence 99999999998754444455678888643
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.1e-05 Score=69.52 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=55.2
Q ss_pred EEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCC-------CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 16 RVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFEN-------SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~-------~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
.+.+|+.++|.|.+..+.|.+ .|.|+++++.+.... .+.+.. ...|.+.-...+|...|+|+|.+..+.
T Consensus 12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~--~s~l~~~~~~~D~g~~ltC~a~~~~~~ 89 (109)
T d1vcaa1 12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETK--SLEVTFTPVIEDIGKVLVCRAKLHIDE 89 (109)
T ss_dssp CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEE--EEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCccee--eEEEEccCChHHCCcEEEEEEEcCcCC
Confidence 378999999999997778865 689999999885221 111111 134666654555555999999987643
Q ss_pred e------eeEeEEEEEEcCC
Q psy574 87 R------ESTDAVLRVLVKP 100 (977)
Q Consensus 87 ~------~s~~~~l~V~~~P 100 (977)
. ......|.|+.+|
T Consensus 90 ~~~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 90 MDSVPTVRQAVKELQVYISP 109 (109)
T ss_dssp CTTSCSEEEEEEECCEECCC
T ss_pred ccccccccceeEEeEEEeCC
Confidence 2 2334567777654
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.90 E-value=2.9e-05 Score=67.01 Aligned_cols=73 Identities=19% Similarity=0.350 Sum_probs=50.2
Q ss_pred cccceEEeCCCcEEEEEECCCCC-CCCeEEEEeC--C---EEee-------cCCCceEEEecC---cEEEEcCCCCCCCe
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--G---HPID-------FENSKRLRLVDG---TNLAIQDSRKTDDG 74 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~--g---~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G 74 (977)
+|..+.+.+|++++|.|....+. ....+.||+. + +.|- .....|+....+ ..|.|.+++.+|+|
T Consensus 6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa 85 (111)
T d1rzfl1 6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (111)
T ss_dssp CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence 35589999999999999883322 3456999972 1 1111 112344544432 36999999999999
Q ss_pred EEEEEEEec
Q psy574 75 RYQCVVKNV 83 (977)
Q Consensus 75 ~Y~C~a~n~ 83 (977)
.|.|.+...
T Consensus 86 ~YyCA~~~~ 94 (111)
T d1rzfl1 86 DYYCGTWDS 94 (111)
T ss_dssp EEEEEEEET
T ss_pred ceEEeecCC
Confidence 999987643
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=4.7e-05 Score=58.55 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=60.1
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCE---EeecCCCceEEEecCc-----EEEEcCCCCCCCeEEEEEEEecC
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKK-NGH---PIDFENSKRLRLVDGT-----NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~---~l~~~~~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
...+..|+.+.|+|.+.--.-.|.|+|-| ||. .|+..........+++ .|.+..+.++|.|.|+|-|....
T Consensus 12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s 91 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 91 (104)
T ss_dssp EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence 46799999999999884445578999988 553 3422222222333333 38899999999999999999888
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
+..+|-.+.|.|
T Consensus 92 ~vieSHSvti~V 103 (104)
T d1xaua_ 92 QVINSHSVTIHV 103 (104)
T ss_dssp EEEECCCEEEEE
T ss_pred hheecceEEEEe
Confidence 888877777665
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=9.1e-06 Score=71.81 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=50.5
Q ss_pred cccceEEeCCCcEEEEEECC--CCC----CCCeEEEEeCCEEe---------------ecCCCceEEEecC-----cEEE
Q psy574 11 QPKSQRVAAGDTALLECGPP--RGH----PEPTLVWKKNGHPI---------------DFENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~--~g~----P~~~v~W~k~g~~l---------------~~~~~~r~~~~~~-----g~L~ 64 (977)
.|.++++.+|++|+|.|... ... ....+.|++....- .....+|+.+..+ .+|.
T Consensus 7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (121)
T d2g5ra1 7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS 86 (121)
T ss_dssp CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence 47789999999999999761 111 12467898853221 1122456776532 3699
Q ss_pred EcCCCCCCCeEEEEEEEec
Q psy574 65 IQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~ 83 (977)
|.+++.+|+|.|.|.+...
T Consensus 87 I~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 87 IRDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp ECSCCGGGCEEEEEEEEET
T ss_pred ECCCChHHCEEEEEEEEeC
Confidence 9999999999999999754
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.89 E-value=1.9e-05 Score=68.08 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=49.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCC----CCCCeEEEEeC--CEE---e-------ecCCCceEEEecC---cEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKN--GHP---I-------DFENSKRLRLVDG---TNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~--g~~---l-------~~~~~~r~~~~~~---g~L~I~~v 68 (977)
+++.|..+.+.+|++|+|.|..... .....+.|++. |+. | ......|+..... ..|.|.++
T Consensus 4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~ 83 (112)
T d1ncwl1 4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV 83 (112)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence 4567889999999999999986221 22345889972 221 1 1122344544322 35999999
Q ss_pred CCCCCeEEEEEEE
Q psy574 69 RKTDDGRYQCVVK 81 (977)
Q Consensus 69 ~~~D~G~Y~C~a~ 81 (977)
+++|+|.|.|...
T Consensus 84 ~~eDsAvYYC~~~ 96 (112)
T d1ncwl1 84 EAEDLGVYYCWQG 96 (112)
T ss_dssp CGGGCEEEEEEEC
T ss_pred ccCcCEeEEEEcC
Confidence 9999999999543
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=1.1e-05 Score=68.27 Aligned_cols=86 Identities=12% Similarity=0.180 Sum_probs=59.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE-----eccceEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----LPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.+...|.. .|..|++|+|.|... .+...+.|+|++.......... .....+.|.+++.+|+|.|+|...+
T Consensus 6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~ 83 (99)
T d1ucta1 6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 83 (99)
T ss_dssp CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence 36778888864 688999999999875 3556899999875322111111 1335699999999999999999988
Q ss_pred CCee--EEEEEEEEE
Q psy574 173 AVGK--ISASATLTV 185 (977)
Q Consensus 173 ~~g~--~~~~~~L~V 185 (977)
...- .+....|.|
T Consensus 84 ~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 84 GHYRFRYSDTLELVV 98 (99)
T ss_dssp TTTEEEECCCEEEEE
T ss_pred CCcccCCCCCEEEEe
Confidence 6543 233455544
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.88 E-value=1.3e-05 Score=69.45 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=51.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEecCc---EEEEcCCCCCCCe
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDGT---NLAIQDSRKTDDG 74 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~~g---~L~I~~v~~~D~G 74 (977)
.+|..+.+.+|++|+|.|..........+.|||. |+.+. .....++.+..+. .|.|.+++.+|+|
T Consensus 3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa 82 (112)
T d1kgcd1 3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA 82 (112)
T ss_dssp ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence 4688899999999999998733333445899982 22211 1223456655433 5999999999999
Q ss_pred EEEEEEEe
Q psy574 75 RYQCVVKN 82 (977)
Q Consensus 75 ~Y~C~a~n 82 (977)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (112)
T d1kgcd1 83 VYYCILPL 90 (112)
T ss_dssp EEEEECCC
T ss_pred eEeeeEec
Confidence 99998754
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=2.5e-05 Score=65.50 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=53.2
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEE---EecCcEEEEcCCCCCCCeEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~---~~~~g~L~I~~v~~~D~G~Y~C 78 (977)
|.=+|.+.+.|.. .|..|++|+|.|.. ......+.++|+|............ ......+.|.+++.+|+|.|+|
T Consensus 1 a~pkPsLsa~P~~-~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C 77 (98)
T d1ugna2 1 AYIKPTLSAQPSP-VVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 77 (98)
T ss_dssp SSCCCEEEEESCS-EEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEE
T ss_pred CCCCCEEEeeCCC-ccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEE
Confidence 4568899999965 49999999999987 3456788899988765321100000 0112359999999999999999
Q ss_pred EEEec
Q psy574 79 VVKNV 83 (977)
Q Consensus 79 ~a~n~ 83 (977)
.....
T Consensus 78 ~y~~~ 82 (98)
T d1ugna2 78 YAYDS 82 (98)
T ss_dssp EEECT
T ss_pred eeEcC
Confidence 88654
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=6.5e-06 Score=69.48 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=51.0
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeC---------------CCCceEEe------ccceEEEccCccCCCeEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAM---------------PEDRMSVL------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l---------------~~~~~~~~------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+...+|++|+|.|.........+.|++..... ..+|.... .+.+|.|.+++.+|+|.|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~ 83 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence 35679999999999876677789999864321 01222221 1236999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy574 168 CEAENAVGKISASATLTV 185 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V 185 (977)
|.+.+. +..+.|.|
T Consensus 84 C~v~~~----~~~v~L~V 97 (97)
T d2nxyb1 84 CEVEDQ----KEEVQLLV 97 (97)
T ss_dssp EEETTE----EEEEEEEE
T ss_pred EEEecC----CeEEEEEC
Confidence 998653 34455554
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.85 E-value=1.6e-05 Score=69.05 Aligned_cols=75 Identities=17% Similarity=0.342 Sum_probs=50.7
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE-Ee---ecC------CCceEEEe--c--CcEEEEcCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH-PI---DFE------NSKRLRLV--D--GTNLAIQDSRK 70 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~-~l---~~~------~~~r~~~~--~--~g~L~I~~v~~ 70 (977)
++.+.|..+.+.+|++|+|.|.... ....+.|||. |. .. ... ...+..+. . ...|.|.+++.
T Consensus 3 ~V~Q~P~~~~v~~G~~vtl~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 80 (113)
T d1h5ba_ 3 QVEQSPSALSLHEGTDSALRCNFTT--TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQL 80 (113)
T ss_dssp SEEEECSEEEEETTCCEEEEEEESS--CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCG
T ss_pred CeEECCCEEEEcCCCCEEEEEEEec--CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCH
Confidence 5677899999999999999999833 3357999982 21 11 000 00111111 1 12599999999
Q ss_pred CCCeEEEEEEEec
Q psy574 71 TDDGRYQCVVKNV 83 (977)
Q Consensus 71 ~D~G~Y~C~a~n~ 83 (977)
+|+|.|.|.+...
T Consensus 81 ~Dsa~YyCa~~~~ 93 (113)
T d1h5ba_ 81 EDSGTYFCAAEAS 93 (113)
T ss_dssp GGCEEEEEEEECS
T ss_pred hHCEEEEEEecCC
Confidence 9999999998654
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=1.6e-05 Score=69.69 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=50.8
Q ss_pred cccceEEeCCCcEEEEEECC--CCCC---CCeEEEEeCC----EEe---------ecCCCceEEEec-----CcEEEEcC
Q psy574 11 QPKSQRVAAGDTALLECGPP--RGHP---EPTLVWKKNG----HPI---------DFENSKRLRLVD-----GTNLAIQD 67 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~--~g~P---~~~v~W~k~g----~~l---------~~~~~~r~~~~~-----~g~L~I~~ 67 (977)
.|.++.+.+|++|+|.|... ...+ ...+.|++.. ..+ ......|+.+.. +.+|.|.+
T Consensus 6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 47889999999999999861 1222 2356677732 111 122345676653 34699999
Q ss_pred CCCCCCeEEEEEEEecC
Q psy574 68 SRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~ 84 (977)
++.+|+|.|.|.+....
T Consensus 86 v~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEISD 102 (118)
T ss_dssp CCGGGCEEEEEEEECC-
T ss_pred CChhHCEEEEEEEEeCC
Confidence 99999999999997543
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.84 E-value=2.4e-05 Score=68.15 Aligned_cols=70 Identities=21% Similarity=0.397 Sum_probs=50.0
Q ss_pred EeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECC-----eeC------------------CCCceEEe-----ccceE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLG-----SAM------------------PEDRMSVL-----PSRSL 153 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~-----~~l------------------~~~~~~~~-----~~~~L 153 (977)
+..|....+.+|++++|.|.+.+ .....+.|||.. ..+ ...++... ....|
T Consensus 2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (115)
T d2atpb1 2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL 81 (115)
T ss_dssp EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence 45677888999999999999865 345679999852 111 11232222 22469
Q ss_pred EEccCccCCCeEEEEEEEe
Q psy574 154 QLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n 172 (977)
.|.+++.+|+|.|.|.+..
T Consensus 82 ~I~~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 82 SIMNVKPEDSDFYFCATVG 100 (115)
T ss_dssp EECSCCGGGCEEEEEEEEC
T ss_pred eecccCCCCCcEEEEeEcC
Confidence 9999999999999998753
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.84 E-value=2.4e-05 Score=67.71 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=50.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCC-----CCCeEEEEeC--CEE---e-------ecCCCceEEEecC---cEEEEcC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGH-----PEPTLVWKKN--GHP---I-------DFENSKRLRLVDG---TNLAIQD 67 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~-----P~~~v~W~k~--g~~---l-------~~~~~~r~~~~~~---g~L~I~~ 67 (977)
+.+.|..+.+.+|++|+|.|.+.... ....+.|||. |+. | ......|+....+ ..|.|.+
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~ 83 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS 83 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence 45678899999999999999863221 1134899982 221 1 1122334444322 3599999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++++|+|.|.|.+..
T Consensus 84 l~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 84 VQAEDLAVYYCKQSY 98 (113)
T ss_dssp CCGGGCEEEEEEECS
T ss_pred cccCCCeEEEecccC
Confidence 999999999998653
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.83 E-value=1.5e-05 Score=69.33 Aligned_cols=72 Identities=14% Similarity=0.387 Sum_probs=53.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+.+.|....+.+|++++|.|.........+.|||... .. ...++... ...+|.|.+++.+
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~ 82 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS 82 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence 4456778889999999999998766667899998531 10 11233332 2346999999999
Q ss_pred CCeEEEEEEEeC
Q psy574 162 DAGEYVCEAENA 173 (977)
Q Consensus 162 D~G~Y~C~a~n~ 173 (977)
|+|.|.|.+...
T Consensus 83 Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 83 DSASYICVVSDR 94 (114)
T ss_dssp GCSEEEEEEECS
T ss_pred hCcccceeeecC
Confidence 999999999864
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=2.3e-05 Score=65.41 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+|.+...|.. .|..|++|+|.|.........+.|+|++...+...........+.|.+++.+|+|.|+|.....
T Consensus 4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 78 (96)
T ss_dssp CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence 46777777854 7899999999998643344579999998755443222123457999999999999999988643
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.82 E-value=2.2e-05 Score=65.49 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=59.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
||.+.+.|. ..|..|++|+|.|.. ......+.++|+|........ ...... ...+.|.+++.+|+|.|+|...
T Consensus 2 KPsLsa~P~-~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~~~~~~~-~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~ 77 (96)
T d1nkra1 2 KPSLLAHPG-PLVKSEETVILQCWS--DVMFEHFLLHREGMFNDTLRL-IGEHHDGVSKANFSISRMTQDLAGTYRCYGS 77 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEE--SSCCSEEEEEEESSSCEEEEE-ECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEeeCC-CccCCCCcEEEEECC--CCCCCEEEEEECCCcCCceee-eeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence 688899994 669999999999987 345668899998753311100 001111 2359999999999999999886
Q ss_pred ecC----ceeeeEeEEEEE
Q psy574 82 NVA----GTRESTDAVLRV 96 (977)
Q Consensus 82 n~~----g~~~s~~~~l~V 96 (977)
... .+..|...+|.|
T Consensus 78 ~~~~p~~wS~pSdpLeL~V 96 (96)
T d1nkra1 78 VTHSPYQVSAPSDPLDIVI 96 (96)
T ss_dssp BTTBTTCCCCCCCCEEEEE
T ss_pred cCCCCCcccCCCCCEEEEC
Confidence 543 122355555544
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.81 E-value=4.5e-05 Score=66.29 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=52.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+.+.|..+.+.+|++++|.|.........+.|||.. ..+ ...++... ....|.|.+++++
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 456677788999999999999866666789999852 111 12233333 1236999999999
Q ss_pred CCeEEEEEEEeC
Q psy574 162 DAGEYVCEAENA 173 (977)
Q Consensus 162 D~G~Y~C~a~n~ 173 (977)
|+|.|.|.+...
T Consensus 84 Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 84 DSALYYCALFLA 95 (115)
T ss_dssp GCEEEEEEEEEC
T ss_pred cCccceEEEEcC
Confidence 999999987654
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.80 E-value=2.5e-05 Score=67.62 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=50.1
Q ss_pred cccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE---ee-------cCCCceEEEec---CcEEEEcCCCCCCC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---ID-------FENSKRLRLVD---GTNLAIQDSRKTDD 73 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~---~g~L~I~~v~~~D~ 73 (977)
+|..+.+.+|++|+|.|....+. ....+.|+|. |+. +- .....++.... +..|.|.+++.+|+
T Consensus 6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 85 (112)
T d1lgva1 6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE 85 (112)
T ss_dssp CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence 37789999999999999884332 2345899982 221 11 12233444432 23599999999999
Q ss_pred eEEEEEEEec
Q psy574 74 GRYQCVVKNV 83 (977)
Q Consensus 74 G~Y~C~a~n~ 83 (977)
|.|.|.+.+.
T Consensus 86 a~YyCa~~~~ 95 (112)
T d1lgva1 86 ADYYCSSYDG 95 (112)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEeeecC
Confidence 9999987654
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.80 E-value=5.5e-05 Score=65.41 Aligned_cols=73 Identities=25% Similarity=0.430 Sum_probs=51.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee---------e--cCCCceEEEec----CcEEEEcC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI---------D--FENSKRLRLVD----GTNLAIQD 67 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l---------~--~~~~~r~~~~~----~g~L~I~~ 67 (977)
+++.|..+.+.+|++++|.|....+ ...+.|||. |+ .+ . ....+|+.... +..|.|.+
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 79 (112)
T d1kgce1 2 VSQSPRYKVAKRGQDVALRCDPISG--HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQR 79 (112)
T ss_dssp CEEECSEEEEETTCCEEEEEECCTT--CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESS
T ss_pred eEECCCeEEECCCCCEEEEEEECCC--CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECC
Confidence 3567888999999999999987333 357999982 21 11 0 11234444432 13699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++++|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (112)
T d1kgce1 80 TQQEDSAVYLCASSL 94 (112)
T ss_dssp CCGGGCEEEEEEEES
T ss_pred CCcCCCEEEEEeeeC
Confidence 999999999998764
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.79 E-value=1.7e-05 Score=69.16 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=52.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EEee-------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--G---HPID-------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.+.|..+.+.+|++++|.|.. .+.-...+.|||. + +.|- .....++....+ ..|.|.+++.+|
T Consensus 4 ltQ~P~sv~~~~G~svtl~C~~-s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 82 (119)
T d1f3rb2 4 LTQSPSLLSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED 82 (119)
T ss_dssp SCEETSEECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred EEccCCEEEECCCCCEEEEEEe-CCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence 4567888999999999999998 4444456899983 2 2221 112334443322 259999999999
Q ss_pred CeEEEEEEEe
Q psy574 73 DGRYQCVVKN 82 (977)
Q Consensus 73 ~G~Y~C~a~n 82 (977)
+|.|.|.+..
T Consensus 83 savYyCa~~~ 92 (119)
T d1f3rb2 83 VATYFCYQYN 92 (119)
T ss_dssp CSEEEEEEES
T ss_pred CeEEEeeccC
Confidence 9999997653
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.78 E-value=1.9e-05 Score=68.15 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=52.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEec--C---cEEEEcCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVD--G---TNLAIQDS 68 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~--~---g~L~I~~v 68 (977)
+.+.+.|..+.+.+|++|+|.|.. ...-...+.|||. |+. |- .....|+.... + ..|.|.++
T Consensus 1 dsVtQ~p~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~ 79 (110)
T d1ac6a_ 1 DSVTQTEGQVALSEEDFLTIHCNY-SASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASV 79 (110)
T ss_dssp CEEEECCSEEEEETTEEEEECEEE-ECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEE
T ss_pred CceEeCCCeEEECCCCCEEEEEEe-cCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCc
Confidence 346778999999999999999987 3333457999982 221 11 00122343321 1 35999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+++|+|.|.|.+...
T Consensus 80 ~~~Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 80 QESDSAVYYCALSGG 94 (110)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred CcCCCcccceeecCC
Confidence 999999999987654
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=8.9e-06 Score=70.80 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=47.5
Q ss_pred ceEEeCCCcEEEEEECCC-CCCCCeEEEEeC--C---EEee----------cCCCceEEEecC---c--EEEEcCCCCCC
Q psy574 14 SQRVAAGDTALLECGPPR-GHPEPTLVWKKN--G---HPID----------FENSKRLRLVDG---T--NLAIQDSRKTD 72 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~--g---~~l~----------~~~~~r~~~~~~---g--~L~I~~v~~~D 72 (977)
...+.+|++++|.|.... ......+.|+|. + ..|. ....+|+.+..+ + +|.|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 367889999999998721 123457899982 2 1121 011246666532 2 59999999999
Q ss_pred CeEEEEEEEec
Q psy574 73 DGRYQCVVKNV 83 (977)
Q Consensus 73 ~G~Y~C~a~n~ 83 (977)
+|.|.|.+...
T Consensus 88 sg~Y~Cav~~~ 98 (113)
T d1smoa_ 88 SGLYQCVIYQP 98 (113)
T ss_dssp CEEEEEEECCT
T ss_pred CceEEEEEECC
Confidence 99999988643
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.78 E-value=3.6e-05 Score=66.74 Aligned_cols=73 Identities=18% Similarity=0.428 Sum_probs=53.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------C------CCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------P------EDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------~------~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+...|....+.+|++++|.|.+.+.....+.|||.. ..+ . .++.... ....|.|.+++.+
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 456688889999999999999977666789999942 211 0 1222221 2247999999999
Q ss_pred CCeEEEEEEEeCC
Q psy574 162 DAGEYVCEAENAV 174 (977)
Q Consensus 162 D~G~Y~C~a~n~~ 174 (977)
|+|.|.|.+....
T Consensus 83 Dsg~YyCa~~~~~ 95 (113)
T d2bnqd1 83 DSATYLCAVRPTS 95 (113)
T ss_dssp GCEEEEEEEEESS
T ss_pred CCcEEeEeEecCC
Confidence 9999999987544
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.78 E-value=3.3e-05 Score=66.13 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=49.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEecC---cEEEEcCCCCCCCeE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVDG---TNLAIQDSRKTDDGR 75 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G~ 75 (977)
+|..+.+.+|++|+|.|.. .......+.|+|. |+. |- .....|+....+ -.|.|.+++.+|+|.
T Consensus 6 Qp~sl~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 84 (109)
T d1w72l1 6 QPPSVSVAPGQTARITCGG-NNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD 84 (109)
T ss_dssp CCSEEEECTTSCEEEEEEC-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eCCeEEECCCCCEEEEEEc-CCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence 4557999999999999997 4444457999972 221 10 112334443322 369999999999999
Q ss_pred EEEEEEec
Q psy574 76 YQCVVKNV 83 (977)
Q Consensus 76 Y~C~a~n~ 83 (977)
|.|.+...
T Consensus 85 YyCA~~~~ 92 (109)
T d1w72l1 85 YYCQVWDS 92 (109)
T ss_dssp EEEEEEET
T ss_pred EEEEecCC
Confidence 99987653
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.77 E-value=3.7e-05 Score=66.40 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=49.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeC--CEEee----------cCCCceEEEe--c---CcEEEEcCCCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--GHPID----------FENSKRLRLV--D---GTNLAIQDSRKT 71 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~--g~~l~----------~~~~~r~~~~--~---~g~L~I~~v~~~ 71 (977)
.+|..+.+.+|++|+|.|...... ....+.|+|. ++.+. ....+|+... . ...|.|.+++.+
T Consensus 5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~ 84 (111)
T d1cd0a_ 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE 84 (111)
T ss_dssp ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence 357789999999999999873222 2345899982 22110 1122444443 2 136999999999
Q ss_pred CCeEEEEEEEec
Q psy574 72 DDGRYQCVVKNV 83 (977)
Q Consensus 72 D~G~Y~C~a~n~ 83 (977)
|+|.|.|.....
T Consensus 85 Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 85 DEADYYCQSYDA 96 (111)
T ss_dssp GCEEEEEEEEET
T ss_pred cCcEEEEeeccC
Confidence 999999987543
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=2e-05 Score=65.75 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=58.4
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceE-EeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMS-VLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+|.+...|.. .|..|++|+|.|... .....+.|+|++...... ... ......+.|.+++.+|+|.|+|...+...
T Consensus 4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~ 81 (95)
T d1olla1 4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (95)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence 5777777755 578999999999974 345679999998643210 000 01224699999999999999999877544
Q ss_pred e--EEEEEEEEE
Q psy574 176 K--ISASATLTV 185 (977)
Q Consensus 176 ~--~~~~~~L~V 185 (977)
. .+..+.|.|
T Consensus 82 ~S~~Sd~leL~V 93 (95)
T d1olla1 82 WSEPSNLLDLVV 93 (95)
T ss_dssp ECCCCCCEEEEE
T ss_pred ccCCCCCEEEEE
Confidence 2 234455554
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.75 E-value=7.3e-05 Score=63.68 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=55.7
Q ss_pred EecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeeecC-----CCccccEEEEEccCCceEEEEeecccCCC
Q psy574 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAA 262 (977)
Q Consensus 192 ~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~ 262 (977)
...|..+.+.+|++++|.|.........+.|++.. . .+.... .....++..... .....|+|.+++.+|+
T Consensus 4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~L~I~~~~~~Ds 82 (106)
T d1a0ql1 4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGS-GRDYSFSISNLEPEDI 82 (106)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEECSCCGGGC
T ss_pred ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecC-CCEeeeEehhhcccCC
Confidence 34567778999999999999876666679999852 1 111111 112456666553 3447899999999999
Q ss_pred CeEEEEEEEc
Q psy574 263 PLIILCLGVN 272 (977)
Q Consensus 263 G~Y~~C~a~n 272 (977)
|.|. |.+..
T Consensus 83 A~Yy-Ca~~~ 91 (106)
T d1a0ql1 83 ATYY-CLQYY 91 (106)
T ss_dssp SEEE-EEECS
T ss_pred EeEE-EEEeC
Confidence 9999 97654
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.75 E-value=3.5e-05 Score=65.95 Aligned_cols=71 Identities=21% Similarity=0.416 Sum_probs=51.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++++|.|.........+.|||.. ..+ ...++... .+..|.|.+++.+|+
T Consensus 4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1j1pl_ 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence 345677788999999999999865555679999863 111 11233332 235799999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+.+
T Consensus 84 a~YyCa~~~ 92 (107)
T d1j1pl_ 84 GMYFCQQAN 92 (107)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEcCC
Confidence 999997654
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.74 E-value=4.6e-05 Score=65.24 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=51.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++|+|.|.........+.|||.. ... ...++... ....|.|.+++.+|+
T Consensus 4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS 83 (107)
T d1kcvl1 4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD 83 (107)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence 346677888999999999999866555679999852 111 11233332 335799999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+..
T Consensus 84 a~YyCa~~~ 92 (107)
T d1kcvl1 84 ADYYCGQSY 92 (107)
T ss_dssp EEEEEEECS
T ss_pred ceEEEEecC
Confidence 999998653
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.73 E-value=3.2e-05 Score=66.18 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=50.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---ee-------cCCCceEEEecC---cEEEEcCCCCCCCeE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---ID-------FENSKRLRLVDG---TNLAIQDSRKTDDGR 75 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G~ 75 (977)
+|..+.+.+|++|+|.|.. .......+.|+| .|+. |- .....|+....+ ..|.|.+++.+|+|.
T Consensus 5 QP~s~~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~ 83 (108)
T d1nfde1 5 QPSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA 83 (108)
T ss_dssp CCSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred CCCeeEECCCCCEEEEEEC-CCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence 4778999999999999987 333445689998 2321 11 112345555432 369999999999999
Q ss_pred EEEEEEec
Q psy574 76 YQCVVKNV 83 (977)
Q Consensus 76 Y~C~a~n~ 83 (977)
|.|.+...
T Consensus 84 YyCA~~~~ 91 (108)
T d1nfde1 84 YYCLSSYG 91 (108)
T ss_dssp EEEEEEET
T ss_pred EEEEeecC
Confidence 99987643
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=9.1e-05 Score=63.61 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=53.5
Q ss_pred EEeCCCeEEEEEEec-ccCc--eEEEEEECCeeCCCCce--------EEeccceEEEccCccCCCeEEEEEEEeCCee--
Q psy574 110 TVSASSIIVFECSVG-GDAV--LTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-- 176 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~-g~p~--~~i~W~k~~~~l~~~~~--------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-- 176 (977)
.+.+|+.++|.|.+. +.|. +.|.|++++..+..... .......|.+.....+|...|+|+|++..+.
T Consensus 12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~ 91 (109)
T d1vcaa1 12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 91 (109)
T ss_dssp CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence 378999999999994 5674 47999999887632110 0112245666655555666899999987543
Q ss_pred -----EEEEEEEEEeeCC
Q psy574 177 -----ISASATLTVQMAP 189 (977)
Q Consensus 177 -----~~~~~~L~V~~~p 189 (977)
......|.|+.+|
T Consensus 92 ~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 92 SVPTVRQAVKELQVYISP 109 (109)
T ss_dssp TSCSEEEEEEECCEECCC
T ss_pred ccccccceeEEeEEEeCC
Confidence 3455667777655
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.71 E-value=3.5e-05 Score=65.71 Aligned_cols=71 Identities=18% Similarity=0.372 Sum_probs=51.0
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+...|....+.+|++++|.|.........+.|||. +... ...++... .+..|.|.+++.+|+
T Consensus 4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (106)
T d1i8ka_ 4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV 83 (106)
T ss_dssp EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence 34557777899999999999986555557999985 2211 12333332 234699999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+..
T Consensus 84 a~YyCa~~~ 92 (106)
T d1i8ka_ 84 GDYYCLQSF 92 (106)
T ss_dssp EEEEEEECS
T ss_pred EEEeEecCc
Confidence 999997654
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.69 E-value=6.4e-05 Score=64.14 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=56.5
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeee-----cCCCccccEEEEEccCCceEEEEeecccCCCC
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLI-----YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~-----~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G 263 (977)
..|..+.+.+|++++|.|...+.....+.|++.. . .+.. .......++..... .....|.|.+++.+|+|
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~-~~~~~L~I~~~~~~Dsa 84 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDS-GKDYTLSITSLQTEDVA 84 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECS-SSSEEEEESSCCGGGCS
T ss_pred eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecC-CCeEEeEEcccccccCC
Confidence 3466778999999999999877666679999852 1 1111 11223567776543 44579999999999999
Q ss_pred eEEEEEEEcC
Q psy574 264 LIILCLGVNA 273 (977)
Q Consensus 264 ~Y~~C~a~n~ 273 (977)
.|. |.+...
T Consensus 85 ~Yy-Ca~~~~ 93 (107)
T d1ospl1 85 TYF-CQQYWS 93 (107)
T ss_dssp EEE-EEECSS
T ss_pred cEE-EeeccC
Confidence 999 976543
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.69 E-value=7.3e-05 Score=64.95 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=50.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--Cee---C----CC-------CceEEe-----ccceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSA---M----PE-------DRMSVL-----PSRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~---l----~~-------~~~~~~-----~~~~L~I~~v~~ 160 (977)
+...|..+.+.+|++++|.|.........+.|||. +.. + .. .+.... .+..|.|.+++.
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 45566778999999999999986555667899984 221 1 00 111111 224799999999
Q ss_pred CCCeEEEEEEEeC
Q psy574 161 EDAGEYVCEAENA 173 (977)
Q Consensus 161 ~D~G~Y~C~a~n~ 173 (977)
+|+|.|.|.+...
T Consensus 83 ~Dsg~YyCa~~~~ 95 (115)
T d1i9ea_ 83 SDSAVYFCAVSGF 95 (115)
T ss_dssp GGCEEEEEEEEET
T ss_pred cccceecccccCC
Confidence 9999999987654
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=7.3e-05 Score=64.76 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=51.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEEC--Ce-e--C-----------CCCceEEec-----cceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRL--GS-A--M-----------PEDRMSVLP-----SRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~--~~-~--l-----------~~~~~~~~~-----~~~L~I~~v~ 159 (977)
+...|....+.+|++|+|.|.+.+. ....+.|||. +. + + ..+|+.+.. +..|.|.+++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 4556788899999999999998543 3457899984 21 1 1 224454431 2359999999
Q ss_pred cCCCeEEEEEEEeC
Q psy574 160 LEDAGEYVCEAENA 173 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~ 173 (977)
.+|+|.|.|.+...
T Consensus 82 ~~Dsg~YyCa~~~~ 95 (114)
T d3bp5a1 82 RNDSGIYLCGAISL 95 (114)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cCCCeEEEEEEEeC
Confidence 99999999988653
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.67 E-value=5.4e-05 Score=64.65 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=51.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++++|.|.........+.|||.. ... ...++... .+..|.|.+++++|+
T Consensus 4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1mexl1 4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL 83 (107)
T ss_dssp EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence 455677788999999999999855545579999852 111 12344332 235699999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
+.|.|.+..
T Consensus 84 A~YyCa~~~ 92 (107)
T d1mexl1 84 AEYFCQQYN 92 (107)
T ss_dssp SEEEEEECS
T ss_pred eeEEEeECC
Confidence 999997653
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.66 E-value=7.4e-05 Score=63.40 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=48.6
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCccCCCeEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~ 167 (977)
|....+.+|++|+|.|.........+.|||... .. ...++... ....|.|.+++.+|+|.|.
T Consensus 5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 84 (103)
T d8faba1 5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY 84 (103)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence 447788999999999998665556789999521 11 01222222 2257999999999999999
Q ss_pred EEEEeC
Q psy574 168 CEAENA 173 (977)
Q Consensus 168 C~a~n~ 173 (977)
|.+...
T Consensus 85 CA~~~~ 90 (103)
T d8faba1 85 CQAWDN 90 (103)
T ss_dssp EEEEET
T ss_pred eeecCC
Confidence 987654
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.65 E-value=6.2e-05 Score=65.09 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=51.1
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Ee---------e-cCCCceEEEe-c---CcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PI---------D-FENSKRLRLV-D---GTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l---------~-~~~~~r~~~~-~---~g~L~I~~ 67 (977)
.+.+.|..+.+.+|++++|.|....+ ...+.|||. |+ .| . .....|+... . ...|.|.+
T Consensus 3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 80 (113)
T d1nfdb1 3 GVVQSPRHIIKEKGGRSVLTCIPISG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 80 (113)
T ss_dssp SCEEECSEEEEETTCCCEEEEECCTT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred CEEEcCCEEEEeCCCCEEEEEEeCCC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence 45677999999999999999997443 357999983 21 11 0 1112233222 1 23699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++.+|+|.|.|.+..
T Consensus 81 ~~~~Dsa~YyCa~~~ 95 (113)
T d1nfdb1 81 LELEDSAMYFCASSL 95 (113)
T ss_dssp CCGGGCEEECEEEES
T ss_pred cCcCCceeEEEEeec
Confidence 999999999998764
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00014 Score=62.38 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=46.7
Q ss_pred CCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--e---C----------CCCceEEe-----ccceEEEccCccCCC
Q psy574 106 PKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--A---M----------PEDRMSVL-----PSRSLQLSDVRLEDA 163 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~---l----------~~~~~~~~-----~~~~L~I~~v~~~D~ 163 (977)
++...+.+|++++|.|..... ....+.|+|... . + ..++..+. ..-+|.|.+++.+|+
T Consensus 3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds 82 (108)
T d1hkfa_ 3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS 82 (108)
T ss_dssp CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence 344578899999999987432 234578988421 1 1 12344332 223699999999999
Q ss_pred eEEEEEEEeCC
Q psy574 164 GEYVCEAENAV 174 (977)
Q Consensus 164 G~Y~C~a~n~~ 174 (977)
|.|.|.+....
T Consensus 83 G~Y~C~v~~~~ 93 (108)
T d1hkfa_ 83 GHYWCRIYRPS 93 (108)
T ss_dssp EEEEEEEECTT
T ss_pred EEEEEEEecCC
Confidence 99999987543
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.64 E-value=0.00013 Score=62.19 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=56.5
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeeecC-----CCccccEEEEEccCCceEEEEeecccCC
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTA 261 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d 261 (977)
+...|....+.+|++++|.|.........+.|++.. . ..++.. .....++..... .....|+|.+++.+|
T Consensus 4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~D 82 (107)
T d1tjgl1 4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGS-GTEFTLTISTLRPED 82 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGG
T ss_pred EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEecc-CCEEEEEeccceeCc
Confidence 344577788999999999999976666789999853 1 122111 112446666543 345789999999999
Q ss_pred CCeEEEEEEEc
Q psy574 262 APLIILCLGVN 272 (977)
Q Consensus 262 ~G~Y~~C~a~n 272 (977)
+|.|. |.+.+
T Consensus 83 sA~Yy-Ca~~~ 92 (107)
T d1tjgl1 83 FATYY-CQQLH 92 (107)
T ss_dssp CSEEE-EEECS
T ss_pred CceEE-EEECc
Confidence 99999 96554
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.64 E-value=0.0001 Score=62.64 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=54.6
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc--Cee--eeecC-----CCccccEEEEEccCCceEEEEeecccCCCC
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE--GNR--SLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--g~~--~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G 263 (977)
..|..+.+.+|++++|.|.........+.|+|. |.. +.+.. .....++..... .....|.|.+++.+|+|
T Consensus 6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~l~~~Dsa 84 (107)
T d1c5cl1 6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRS-GSDYSLTISSLESEDFA 84 (107)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCGGGCS
T ss_pred ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEeccc-CCEEEEEEhhhcccCCe
Confidence 456677888999999999987776677999984 222 11111 112345555443 34469999999999999
Q ss_pred eEEEEEEEc
Q psy574 264 LIILCLGVN 272 (977)
Q Consensus 264 ~Y~~C~a~n 272 (977)
.|. |.+.+
T Consensus 85 ~Yy-Ca~~~ 92 (107)
T d1c5cl1 85 DYY-CLQYA 92 (107)
T ss_dssp EEE-EEECS
T ss_pred EEE-EecCc
Confidence 999 97654
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.64 E-value=8.4e-05 Score=64.05 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=55.3
Q ss_pred CCCceEEeCCCeEEEEEEeccc--CceEEEEEECCee-----C----------CCCceEEe---ccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGSA-----M----------PEDRMSVL---PSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~~-----l----------~~~~~~~~---~~~~L~I~~v~~~D~G 164 (977)
.|....+.+|++++|.|.+.+. ....+.||+.... + ..+++... .+..|.|.+++.+|++
T Consensus 6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA 85 (114)
T d2rhea_ 6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEA 85 (114)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCc
Confidence 3446788999999999998544 2457899986321 0 11233332 2357999999999999
Q ss_pred EEEEEEEeCCee---EEEEEEEEEeeCC
Q psy574 165 EYVCEAENAVGK---ISASATLTVQMAP 189 (977)
Q Consensus 165 ~Y~C~a~n~~g~---~~~~~~L~V~~~p 189 (977)
.|.|.+...... .-...+|+|...|
T Consensus 86 ~YyCA~~~~~~~~~~FG~GT~LtVlg~p 113 (114)
T d2rhea_ 86 DYYCAAWNDSLDEPGFGGGTKLTVLGQP 113 (114)
T ss_dssp EEEEEEEETTTTEEEECCCEEEEECSCC
T ss_pred eEEEeecCCCCCCCEECCCeEEEECCCc
Confidence 999987643221 1123466665433
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.63 E-value=6.4e-05 Score=64.19 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=51.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++|+|.|.........+.|||... .. ..+++... .+..|.|.+++.+|+
T Consensus 4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1d5il1 4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM 83 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence 3455777789999999999998665566789998521 10 11234332 235799999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+..
T Consensus 84 a~YyCa~~~ 92 (107)
T d1d5il1 84 GIYYCLQYD 92 (107)
T ss_dssp EEEEEEECS
T ss_pred EEEEeeecc
Confidence 999997654
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.63 E-value=7.7e-05 Score=64.66 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=49.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe---e----------cCCCceEEEec----CcEEEEcCCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI---D----------FENSKRLRLVD----GTNLAIQDSR 69 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l---~----------~~~~~r~~~~~----~g~L~I~~v~ 69 (977)
++.|..+.+.+|++|+|.|.... ....+.|||. |+.+ - .....++.... ...|.|.+++
T Consensus 3 tQsP~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (114)
T d1ogae1 3 TQSPKYLFRKEGQNVTLSCEQNL--NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ 80 (114)
T ss_dssp ECSCSEEEEETTCCEEECCEECS--CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred EEcCCeEEEcCCCCEEEEEEEec--CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence 56688899999999999999833 3457999982 2111 0 01112222221 2359999999
Q ss_pred CCCCeEEEEEEEec
Q psy574 70 KTDDGRYQCVVKNV 83 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~ 83 (977)
.+|+|.|.|.+...
T Consensus 81 ~~DSa~YyCa~~~~ 94 (114)
T d1ogae1 81 KNPTAFYLCASSSR 94 (114)
T ss_dssp SCCCEEEEEEEESS
T ss_pred cCCceeEEEeeccC
Confidence 99999999977643
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.63 E-value=5e-05 Score=66.28 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=51.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--C---EEee-----------cCCCceEEEecC-----cEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--G---HPID-----------FENSKRLRLVDG-----TNL 63 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g---~~l~-----------~~~~~r~~~~~~-----g~L 63 (977)
++.+.|..+.+.+|++|+|.|.+ .+. ....+.|||. | +.|- ....+|+.+..+ ..|
T Consensus 3 kl~Q~~~sv~~~~G~svtL~C~~-~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L 81 (120)
T d1ypzf1 3 KLEQPEISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSIL 81 (120)
T ss_dssp SEECSCSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEE
T ss_pred CeEcCCCEEEecCCCcEEEEEEE-ecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccc
Confidence 35566778999999999999987 332 2356899982 2 1110 122346665432 249
Q ss_pred EEcCCCCCCCeEEEEEEEe
Q psy574 64 AIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.+++.+|+|.|.|....
T Consensus 82 ~I~~l~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 82 TIYSLEEEDEAIYYCSYGE 100 (120)
T ss_dssp EECSCCGGGCSEEEEEECC
T ss_pred cccccccccceeEEEEEcC
Confidence 9999999999999997653
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.62 E-value=0.00014 Score=62.80 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=49.8
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEe-------------ecCCCceEEEe-cC---cEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPI-------------DFENSKRLRLV-DG---TNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l-------------~~~~~~r~~~~-~~---g~L~I~~v 68 (977)
+++.|....+.+|++++|.|....+ ...+.||| .|+.+ ......++... .+ ..|.|.++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~s~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 79 (112)
T d2bnub1 2 VTQTPKFQVLKTGQSMTLQCAQDMN--HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSA 79 (112)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC--CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSC
T ss_pred eEECCCeEEECCCCCEEEEEEEECC--ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCC
Confidence 3567888899999999999987433 45799998 22111 01112222222 22 35999999
Q ss_pred CCCCCeEEEEEEEe
Q psy574 69 RKTDDGRYQCVVKN 82 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n 82 (977)
+++|+|.|.|.+..
T Consensus 80 ~~~DsavYyCA~~~ 93 (112)
T d2bnub1 80 APSQTSVYFCASSY 93 (112)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred CHHHCEEEEEeecC
Confidence 99999999998753
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=8.3e-05 Score=65.32 Aligned_cols=70 Identities=26% Similarity=0.428 Sum_probs=49.4
Q ss_pred CCCceEEeCCCeEEEEEEeccc-------CceEEEEEECCeeC------------------CCCceEEe-----ccceEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGD-------AVLTVHWKRLGSAM------------------PEDRMSVL-----PSRSLQ 154 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~-------p~~~i~W~k~~~~l------------------~~~~~~~~-----~~~~L~ 154 (977)
.|..+++.+|++|+|.|.+... ....+.|++....- ..+|..+. .+.+|.
T Consensus 7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (121)
T d2g5ra1 7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS 86 (121)
T ss_dssp CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence 4567789999999999987311 12468899863211 02355554 235799
Q ss_pred EccCccCCCeEEEEEEEeCC
Q psy574 155 LSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~ 174 (977)
|.+++.+|+|.|.|.+....
T Consensus 87 I~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 87 IRDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp ECSCCGGGCEEEEEEEEETT
T ss_pred ECCCChHHCEEEEEEEEeCC
Confidence 99999999999999997643
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.61 E-value=8e-05 Score=65.04 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=52.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeC--CE---Eee-------cCCCceEEEecC-----cEEEEcCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--GH---PID-------FENSKRLRLVDG-----TNLAIQDS 68 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~--g~---~l~-------~~~~~r~~~~~~-----g~L~I~~v 68 (977)
++..++..+.+.+|++++|.|...... ....+.|+|. |+ .|- .....|+....+ ..|.|.++
T Consensus 3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~ 82 (120)
T d1hxma1 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (120)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccc
Confidence 456678889999999999999983222 2356999982 21 111 122345554422 36999999
Q ss_pred CCCCCeEEEEEEEe
Q psy574 69 RKTDDGRYQCVVKN 82 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n 82 (977)
+++|+|.|.|....
T Consensus 83 ~~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 83 SERDEGSYYCACDT 96 (120)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred cccCCceeecCccc
Confidence 99999999998654
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.60 E-value=6.4e-05 Score=64.97 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=50.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee----------cCCCceEEEec----CcEEEEcCCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID----------FENSKRLRLVD----GTNLAIQDSR 69 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~----------~~~~~r~~~~~----~g~L~I~~v~ 69 (977)
.+.|....+.+|++++|.|....+ ...+.|||. |+. |- .....+..... ...|.|.+++
T Consensus 2 ~QsP~~~~~~~G~svtL~C~~~~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 79 (112)
T d2cdeb1 2 YQTPRYLVIGTGKKITLECSQTMG--HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR 79 (112)
T ss_dssp EEECSEEEEETTCCBCCEEEETTC--CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred EECCCEEEECCCCCEEEEEEEeCC--cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence 567888999999999999987433 357999982 111 10 11112222221 2359999999
Q ss_pred CCCCeEEEEEEEec
Q psy574 70 KTDDGRYQCVVKNV 83 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~ 83 (977)
.+|+|.|.|.+...
T Consensus 80 ~~Dsa~YyCA~~~~ 93 (112)
T d2cdeb1 80 PSHTSQYLCASSEN 93 (112)
T ss_dssp TTTCSEEEEEEECS
T ss_pred ccccccEEEEEecC
Confidence 99999999988654
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.60 E-value=0.00019 Score=61.06 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=56.1
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeeec-----CCCccccEEEEEccCCceEEEEeecccCCCC
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLIY-----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G 263 (977)
..|..+.+.+|++++|.|.........+.|++.. . .++.. ......++..... .....|.|.+++.+|+|
T Consensus 5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~-~~~~~L~I~~~~~~Dsa 83 (106)
T d1op3k1 5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGS-GTEFTLTISGLQFDDFA 83 (106)
T ss_dssp EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEEESCCGGGCS
T ss_pred CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeecc-CCEEEEEEccccccCCC
Confidence 4577788999999999999876666679999863 1 12111 1112456766653 34468999999999999
Q ss_pred eEEEEEEEc
Q psy574 264 LIILCLGVN 272 (977)
Q Consensus 264 ~Y~~C~a~n 272 (977)
.|. |.+..
T Consensus 84 ~Yy-Ca~~~ 91 (106)
T d1op3k1 84 TYH-CQHYA 91 (106)
T ss_dssp EEE-EEEEC
T ss_pred cEe-eeeCC
Confidence 999 97654
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.59 E-value=9.4e-05 Score=64.14 Aligned_cols=73 Identities=14% Similarity=0.325 Sum_probs=50.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEEC--CeeC--------CC------CceEEe-----ccceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRL--GSAM--------PE------DRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~--~~~l--------~~------~~~~~~-----~~~~L~I~~v~ 159 (977)
+...|....+.+|++|+|.|... ......+.|||. +... .. .+.... ....|.|.+++
T Consensus 3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 45567788899999999999864 334456899984 2211 00 122221 12479999999
Q ss_pred cCCCeEEEEEEEeCC
Q psy574 160 LEDAGEYVCEAENAV 174 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~ 174 (977)
.+|+|.|.|.+....
T Consensus 83 ~~Dsg~YyCa~~~~~ 97 (114)
T d2ak4d1 83 VVDSAVYFCALSGFY 97 (114)
T ss_dssp GGGCEEEEEEEECSB
T ss_pred cccCCCceEeCCCCC
Confidence 999999999876543
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=3.3e-05 Score=63.89 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=53.6
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
+.+|.+...|. ..|..|++|+|.|... .....+.|+|+|......+........+.|.+++.+|+|.|+|...
T Consensus 2 ypkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~ 74 (93)
T d1olla2 2 YDTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS 74 (93)
T ss_dssp SCCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred CCCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence 35677777774 4688999999999974 3456899999876543222111134579999999999999999754
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.58 E-value=6e-05 Score=64.41 Aligned_cols=72 Identities=18% Similarity=0.374 Sum_probs=51.0
Q ss_pred ccceEEeCCCcEEEEEECCCC--CCCCeEEEEeC--CE----EeecC---------CCceEEEecCc-----EEEEcCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRG--HPEPTLVWKKN--GH----PIDFE---------NSKRLRLVDGT-----NLAIQDSR 69 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~--g~----~l~~~---------~~~r~~~~~~g-----~L~I~~v~ 69 (977)
.....+.+|++++|.|.. .+ .....+.|+|. |+ .+... ..+|+.+.++. .|.|++++
T Consensus 2 e~~~~~~eG~svtl~C~y-s~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~ 80 (110)
T d1u9ka_ 2 EERYDLVEGQTLTVKCPF-NIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ 80 (110)
T ss_dssp CEEEEECTTCCEEEEEEC-CHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCCcCCCCCCEEEEEEE-CCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc
Confidence 345789999999999998 33 34567899983 32 12111 13577776532 49999999
Q ss_pred CCCCeEEEEEEEecC
Q psy574 70 KTDDGRYQCVVKNVA 84 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~ 84 (977)
.+|+|.|.|......
T Consensus 81 ~eDsa~YyCa~~~~~ 95 (110)
T d1u9ka_ 81 VTDSGLYRCVIYHPP 95 (110)
T ss_dssp GGGCEEEEEEEECTT
T ss_pred cCCCEEEEEEEeCCC
Confidence 999999999986543
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.58 E-value=0.00016 Score=62.88 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=58.9
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc--Ce--eeee----------cCCCccccEEEEEccCCceEEEEee
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE--GN--RSLI----------YPGDRVDNIQAEITSDGMNLLKIQN 256 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--g~--~~~~----------~~~~~~~~~~~~~~~~g~s~L~I~~ 256 (977)
+...|....+.+|++++|.|...+.....+.|+|. |. .++. .......++...........|.|.+
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~ 83 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS 83 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence 33456677889999999999987776778999985 22 1111 1112245677765544446899999
Q ss_pred cccCCCCeEEEEEEEcCC
Q psy574 257 VSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~ 274 (977)
++.+|+|.|. |.+....
T Consensus 84 ~~~~Dsa~Yy-Ca~~~~~ 100 (118)
T d2ij0c1 84 AHPEDSGFYV-CSALAGS 100 (118)
T ss_dssp CCGGGCEEEE-EEEECSS
T ss_pred cccccCceEE-EEEecCC
Confidence 9999999999 9876543
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.58 E-value=0.00012 Score=63.30 Aligned_cols=74 Identities=12% Similarity=0.302 Sum_probs=51.1
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEEee-------------cCCCceEEEe-cC---cEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHPID-------------FENSKRLRLV-DG---TNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~l~-------------~~~~~r~~~~-~~---g~L~I~~ 67 (977)
++.+.|..+.+.+|++|+|.|....+ ...+.||| .|+.+. .....++... .+ ..|.|.+
T Consensus 2 ~V~QsP~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 79 (113)
T d1j8he1 2 KVTQSSRYLVKRTGEKVFLECVQDMD--HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILES 79 (113)
T ss_dssp CEEESCSEEEEETTCCEEECEEESSC--CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESS
T ss_pred EEEccCCEEEECCCCCEEEEEEEcCC--ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEecc
Confidence 35677989999999999999987333 35789998 222111 1111223322 11 3699999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++.+|+|.|.|.+..
T Consensus 80 ~~~~Dsa~YyCa~~~ 94 (113)
T d1j8he1 80 ASTNQTSMYLCASSS 94 (113)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred CccCCcccEEeeEcc
Confidence 999999999998864
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.56 E-value=0.00013 Score=63.42 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=46.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCC--CeEEEEe--CCEEee-------------cCCCce--EEEec-CcEEEEcCCCC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPE--PTLVWKK--NGHPID-------------FENSKR--LRLVD-GTNLAIQDSRK 70 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k--~g~~l~-------------~~~~~r--~~~~~-~g~L~I~~v~~ 70 (977)
+|..+.+.+|++|+|.|....+... ..+.|+| .|+... ...+.. ..... ...|.|.+++.
T Consensus 5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 84 (117)
T d1dqta_ 5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA 84 (117)
T ss_dssp CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence 3778999999999999987333322 2478998 232210 001111 11111 23699999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 85 ~Dsa~YyCa~~~ 96 (117)
T d1dqta_ 85 VDTGLYLCKVEL 96 (117)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCEeEEEEEec
Confidence 999999998764
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.54 E-value=0.00017 Score=61.89 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=47.4
Q ss_pred CCceEEeCCCeEEEEEEecc-cCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccCCCeEE
Q psy574 106 PKDTTVSASSIIVFECSVGG-DAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y 166 (977)
|..+.+.+|++++|.|...+ .....+.|||. +..+ ...+.... ....|.|.+++.+|+|.|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY 84 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence 55788999999999999754 34456899995 2211 01111111 224699999999999999
Q ss_pred EEEEEeC
Q psy574 167 VCEAENA 173 (977)
Q Consensus 167 ~C~a~n~ 173 (977)
.|.+...
T Consensus 85 yCa~~~~ 91 (110)
T d2esvd1 85 YCIVVRS 91 (110)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 9987643
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=8.3e-05 Score=64.83 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=49.3
Q ss_pred eCCCceEEeCCCeEEEEEEecc---c---CceEEEEEECCeeC----------------CCCceEEe-----ccceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGG---D---AVLTVHWKRLGSAM----------------PEDRMSVL-----PSRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g---~---p~~~i~W~k~~~~l----------------~~~~~~~~-----~~~~L~I~ 156 (977)
..|..+.+.+|++|+|.|.+.. . ....+.|++..... ..+|+.+. .+.+|.|.
T Consensus 5 ~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~ 84 (118)
T d1qfoa_ 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLK 84 (118)
T ss_dssp ECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred ECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEEC
Confidence 3467788999999999999741 1 12356788753211 12355554 34579999
Q ss_pred cCccCCCeEEEEEEEeC
Q psy574 157 DVRLEDAGEYVCEAENA 173 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~ 173 (977)
+++.+|+|.|.|.+...
T Consensus 85 ~v~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 85 DLKPEDSGTYNFRFEIS 101 (118)
T ss_dssp SCCGGGCEEEEEEEECC
T ss_pred CCChhHCEEEEEEEEeC
Confidence 99999999999999754
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.54 E-value=0.0002 Score=59.41 Aligned_cols=63 Identities=25% Similarity=0.460 Sum_probs=43.0
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeC--CE---Eee------cCCCceEEEe--cC---cEEEEcCCCCCCCeEEEEEEEec
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKN--GH---PID------FENSKRLRLV--DG---TNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~------~~~~~r~~~~--~~---g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
|++|+|.|.. .......+.|+|. |+ .|- ....+|+... .+ .+|.|.+++++|+|.|.|.+...
T Consensus 1 G~~vtl~C~~-~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTY-SDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEE-CCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEE-ccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 8999999997 4556678999982 21 111 1112344433 11 36999999999999999988643
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.53 E-value=0.00032 Score=60.79 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=56.6
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecC-CCCeEEEEEc--C-e-eeeecC--------CCccccEEEEEcc-CCceEEEEee
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGS-PPPSTFWMLE--G-N-RSLIYP--------GDRVDNIQAEITS-DGMNLLKIQN 256 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~--g-~-~~~~~~--------~~~~~~~~~~~~~-~g~s~L~I~~ 256 (977)
+...|..+.+.+|++++|.|...+. ....+.|++. | . ..++.. ....+|+...... .....|+|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 4456777889999999999998654 4567999973 2 1 111111 1123577766432 2336899999
Q ss_pred cccCCCCeEEEEEEEcCC
Q psy574 257 VSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~ 274 (977)
++.+|+|.|. |.+....
T Consensus 83 ~~~~Dsg~Yy-Ca~~~~~ 99 (116)
T d1tvda_ 83 VRTEDSATYY-CAFTLPP 99 (116)
T ss_dssp CCGGGCEEEE-EEEECTT
T ss_pred ccccccccce-eeEecCC
Confidence 9999999999 9766543
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.53 E-value=9.7e-05 Score=64.12 Aligned_cols=72 Identities=15% Similarity=0.324 Sum_probs=51.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---C---C--------CCceEEe-----ccceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---M---P--------EDRMSVL-----PSRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---l---~--------~~~~~~~-----~~~~L~I~~v~~ 160 (977)
+...|..+.+.+|++++|.|.........+.|||.. .. | . ..++... ....|.|.+++.
T Consensus 3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1j8hd1 3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM 82 (115)
T ss_dssp EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence 456677889999999999999865555679999842 11 1 0 0122221 123699999999
Q ss_pred CCCeEEEEEEEeC
Q psy574 161 EDAGEYVCEAENA 173 (977)
Q Consensus 161 ~D~G~Y~C~a~n~ 173 (977)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 83 SDAAEYFCAVSES 95 (115)
T ss_dssp GGCEEEEEEEESS
T ss_pred cCCccceeeecCC
Confidence 9999999998754
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.52 E-value=0.0001 Score=64.59 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=51.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE---e----------ec--CCCceEEEecC-----cEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I----------DF--ENSKRLRLVDG-----TNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~---l----------~~--~~~~r~~~~~~-----g~L 63 (977)
+.+.|.++.+.+|++++|.|.+ .|. -...+.|+|. |+. | .. ...+|+++..+ ..|
T Consensus 4 l~Qp~~s~t~~~g~t~~LsC~~-sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L 82 (123)
T d1hxmb1 4 LEQPQISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (123)
T ss_dssp EECCCSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred eECCCCeEEeCCCCCEEEEEEE-cCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceee
Confidence 3445567889999999999988 443 2346899982 211 1 01 12357776532 259
Q ss_pred EEcCCCCCCCeEEEEEEEe
Q psy574 64 AIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.+++.+|+|.|.|....
T Consensus 83 ~i~~l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 83 TIHNVEKQDIATYYCALWE 101 (123)
T ss_dssp EECSCCGGGCEEEEEEEEE
T ss_pred cccccccccCcEEEEeeeC
Confidence 9999999999999998754
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.52 E-value=0.00011 Score=63.02 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=50.0
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECC--ee---C----------CCCceEEe---ccceEEEccCccCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLG--SA---M----------PEDRMSVL---PSRSLQLSDVRLED 162 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~--~~---l----------~~~~~~~~---~~~~L~I~~v~~~D 162 (977)
+.+.|....+.+|++++|.|...+. ....+.|||.. .. | ..+++... ....|.|.+++.+|
T Consensus 4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D 83 (108)
T d2fx7l1 4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED 83 (108)
T ss_dssp EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence 3456778889999999999998543 34568999963 21 1 11233322 22469999999999
Q ss_pred CeEEEEEEEe
Q psy574 163 AGEYVCEAEN 172 (977)
Q Consensus 163 ~G~Y~C~a~n 172 (977)
+|.|.|.+..
T Consensus 84 sa~YyCa~~~ 93 (108)
T d2fx7l1 84 FAVYYCQQYG 93 (108)
T ss_dssp CSEEEEEECS
T ss_pred cEEEeeecCC
Confidence 9999998753
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.51 E-value=0.00011 Score=63.26 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=50.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------C------CCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------P------EDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------~------~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+...|....+.+|++++|.|.........+.|||.. ... . ..+.... ....|.|.+++.+
T Consensus 2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (110)
T d1u3ha1 2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG 81 (110)
T ss_dssp EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence 345577888999999999999865555679999852 111 0 0121221 1236999999999
Q ss_pred CCeEEEEEEEe
Q psy574 162 DAGEYVCEAEN 172 (977)
Q Consensus 162 D~G~Y~C~a~n 172 (977)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (110)
T d1u3ha1 82 DSATYFCAASA 92 (110)
T ss_dssp SCSEEEECCEE
T ss_pred CceeEeeeecC
Confidence 99999998764
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.51 E-value=0.00016 Score=61.22 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=49.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEEee---------------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPID---------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~l~---------------~~~~~r~~~~~~-----g~L~ 64 (977)
..++....+.+|++++|.|.+ .|. ....+.|+|. |+.++ ..-.+|+++..+ ..|.
T Consensus 4 L~esg~~~~kPG~sl~LsC~~-SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~ 82 (115)
T d1f3dh1 4 LQQSGPELVKPGASVKVSCKA-SGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMH 82 (115)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEeECCcEECCCCCEEEEEEE-ccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEee
Confidence 456667789999999999998 443 3446889872 22211 111357777643 1499
Q ss_pred EcCCCCCCCeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a 80 (977)
|++++.+|++.|.|..
T Consensus 83 i~~l~~eDtAvYYCAr 98 (115)
T d1f3dh1 83 LNSLTFEDSAVYYCAN 98 (115)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred eeecCcCCcEEEEEec
Confidence 9999999999999953
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.50 E-value=0.00013 Score=62.59 Aligned_cols=71 Identities=18% Similarity=0.406 Sum_probs=50.6
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---C----------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---M----------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---l----------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++++|.|...+.....+.|||.. .. + ...++... ....|.|.+++.+|+
T Consensus 6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds 85 (109)
T d1bwwa_ 6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI 85 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence 345577778999999999999866555678999952 11 1 11233332 224699999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+..
T Consensus 86 a~YyCA~~~ 94 (109)
T d1bwwa_ 86 ATYYCQQYQ 94 (109)
T ss_dssp EEEEEEECS
T ss_pred ceEEEeecC
Confidence 999998654
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.50 E-value=0.00012 Score=62.55 Aligned_cols=71 Identities=18% Similarity=0.364 Sum_probs=50.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---C----------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---M----------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---l----------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++++|.|.........+.|||.. .. + ...++... ....|.|.+++.+|+
T Consensus 4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS 83 (109)
T d1mqkl_ 4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF 83 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence 345577888899999999999865555569999942 11 1 11233322 234799999999999
Q ss_pred eEEEEEEEe
Q psy574 164 GEYVCEAEN 172 (977)
Q Consensus 164 G~Y~C~a~n 172 (977)
|.|.|.+..
T Consensus 84 a~YyCA~~~ 92 (109)
T d1mqkl_ 84 GSYYCQHHY 92 (109)
T ss_dssp EEEEEEECS
T ss_pred eeEEEeeeC
Confidence 999998763
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=0.00013 Score=62.12 Aligned_cols=68 Identities=21% Similarity=0.401 Sum_probs=48.9
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---C----------CCCceEEe---ccceEEEccCccCCCeE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---M----------PEDRMSVL---PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---l----------~~~~~~~~---~~~~L~I~~v~~~D~G~ 165 (977)
..|....+.+|++++|.|...+.....+.|||.. .. + ...++... .+..|.|.+++.+|+|.
T Consensus 5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~ 84 (106)
T d1lk3l1 5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI 84 (106)
T ss_dssp ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence 3455678999999999999976555679999852 11 1 11233333 22479999999999999
Q ss_pred EEEEEE
Q psy574 166 YVCEAE 171 (977)
Q Consensus 166 Y~C~a~ 171 (977)
|.|.+.
T Consensus 85 YyCa~~ 90 (106)
T d1lk3l1 85 YFCQQS 90 (106)
T ss_dssp EEEEEC
T ss_pred cccccc
Confidence 999654
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.46 E-value=0.00032 Score=59.61 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=53.7
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeeecC-----CCccccEEEEEccCCceEEEEeecccCCCC
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G 263 (977)
..|..+.+.+|++++|.|.........+.|++.. . ..++.. .....++..... .....|+|.+++.+|+|
T Consensus 6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~l~~~Dsa 84 (108)
T d1jhll_ 6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGS-GTDFTLTISSLEPEDFA 84 (108)
T ss_dssp EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEES-SSEEEEEECSCCTTCCS
T ss_pred ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCC-CCEEEeEeeeeEeccce
Confidence 4567778899999999999876666679999852 1 111111 111334444442 34468999999999999
Q ss_pred eEEEEEEEcC
Q psy574 264 LIILCLGVNA 273 (977)
Q Consensus 264 ~Y~~C~a~n~ 273 (977)
.|. |.+.+.
T Consensus 85 ~Yy-CA~~~~ 93 (108)
T d1jhll_ 85 MYI-CQQHNE 93 (108)
T ss_dssp EEE-EEECSS
T ss_pred EEE-EeeCCC
Confidence 999 975543
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.46 E-value=7.6e-06 Score=68.58 Aligned_cols=70 Identities=26% Similarity=0.487 Sum_probs=47.8
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEecC-----cEEEEcCCCCCCCeEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDG-----TNLAIQDSRKTDDGRY 76 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y 76 (977)
...|.+|++|+|.|... + ....+.|+|. |+.+. ....+|+++..+ ..|.|.+++.+|+|.|
T Consensus 2 slsV~eG~~vtL~C~~~-~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 79 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYK-T-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASY 79 (96)
T ss_dssp CCCCSSCCCCCBCCBCS-S-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCC
T ss_pred CceECCCCCEEEEEEEe-C-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEE
Confidence 45688999999999883 2 3457999982 22210 112344444321 2599999999999999
Q ss_pred EEEEEecCc
Q psy574 77 QCVVKNVAG 85 (977)
Q Consensus 77 ~C~a~n~~g 85 (977)
.|.+....|
T Consensus 80 yCA~~~~~g 88 (96)
T d1ymmd1 80 FCATDTTSG 88 (96)
T ss_dssp EEEEEETTS
T ss_pred eEeEecCCC
Confidence 998875543
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.46 E-value=0.00024 Score=60.88 Aligned_cols=73 Identities=14% Similarity=0.254 Sum_probs=51.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+...|....+.+|++++|.|.........+.|||.. ..+ ...++... ....|.|.++..+
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 456777889999999999998755445579999952 111 01222222 1246999999999
Q ss_pred CCeEEEEEEEeCC
Q psy574 162 DAGEYVCEAENAV 174 (977)
Q Consensus 162 D~G~Y~C~a~n~~ 174 (977)
|+|.|.|.+....
T Consensus 83 Dsa~YyCA~~~~~ 95 (110)
T d1ac6a_ 83 DSAVYYCALSGGN 95 (110)
T ss_dssp GCEEEEEEEEETT
T ss_pred CCcccceeecCCC
Confidence 9999999876543
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00018 Score=62.16 Aligned_cols=81 Identities=15% Similarity=0.303 Sum_probs=57.3
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCe----e-e-ee---------cCCCccccEEEEEccCCceEEEE
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGN----R-S-LI---------YPGDRVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~----~-~-~~---------~~~~~~~~~~~~~~~~g~s~L~I 254 (977)
+...|....+.+|++++|.|...... ...+.|+|... . + .+ .......++..... .....|+|
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~-~~~~~L~I 81 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRL-GDTFVLTL 81 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEE-TTEEEEEE
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECC-CCChhcEE
Confidence 45678888999999999999986543 45689998531 1 1 11 11122456766654 34578999
Q ss_pred eecccCCCCeEEEEEEEcC
Q psy574 255 QNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~ 273 (977)
.+++.+|+|.|. |.+...
T Consensus 82 ~~l~~~Dsg~Yy-Ca~~~~ 99 (114)
T d1akjd_ 82 SDFRRENEGYYF-CSALSN 99 (114)
T ss_dssp SSCCGGGCEEEE-EEEEET
T ss_pred ccCCCCCCEEEe-EeEcCC
Confidence 999999999999 987643
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.44 E-value=0.00016 Score=61.64 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=49.6
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCCeE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~ 165 (977)
..|....+.+|++++|.|.........+.|||.. ..+ ...++... ....|.|.+++.+|+|.
T Consensus 5 tQp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 84 (109)
T d1w72l1 5 TQPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD 84 (109)
T ss_dssp BCCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred eeCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence 3455678899999999999865455679999852 111 11233222 23479999999999999
Q ss_pred EEEEEEeC
Q psy574 166 YVCEAENA 173 (977)
Q Consensus 166 Y~C~a~n~ 173 (977)
|.|.+...
T Consensus 85 YyCA~~~~ 92 (109)
T d1w72l1 85 YYCQVWDS 92 (109)
T ss_dssp EEEEEEET
T ss_pred EEEEecCC
Confidence 99988654
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.43 E-value=0.00014 Score=63.02 Aligned_cols=72 Identities=15% Similarity=0.369 Sum_probs=50.6
Q ss_pred EEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECC--eeC--------------CCCceEEe-----ccceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLG--SAM--------------PEDRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~--~~l--------------~~~~~~~~-----~~~~L~I~~v~ 159 (977)
+...|..+.+.+|++|+|.|... ......+.|||.. ..+ ..+++... ....|.|.+++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 45567788999999999999874 3344568999842 111 01233332 12469999999
Q ss_pred cCCCeEEEEEEEeC
Q psy574 160 LEDAGEYVCEAENA 173 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~ 173 (977)
.+|+|.|.|.+...
T Consensus 82 ~~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 82 IEDSAVYFCAMRGD 95 (115)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccccccccceeecC
Confidence 99999999987643
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.43 E-value=0.00021 Score=61.48 Aligned_cols=71 Identities=17% Similarity=0.347 Sum_probs=51.2
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+...|....+.+|++++|.|...+.....+.||+. +... ..+++... ...+|.|.+++.+
T Consensus 3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (111)
T d1bd2d1 3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG 82 (111)
T ss_dssp EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence 45567778899999999999986655667899995 2211 01222222 2347999999999
Q ss_pred CCeEEEEEEEe
Q psy574 162 DAGEYVCEAEN 172 (977)
Q Consensus 162 D~G~Y~C~a~n 172 (977)
|+|.|.|.+..
T Consensus 83 Dsa~YyCa~~~ 93 (111)
T d1bd2d1 83 DSAVYFCAAME 93 (111)
T ss_dssp GCEEEEEEEES
T ss_pred ccEEEEeeccC
Confidence 99999998764
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00027 Score=60.67 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=48.8
Q ss_pred eEEeCCCeEEEEEEecccC---ce--EEEEEECCeeC-----------------CCCceEEe-ccceEEEccCccCCCeE
Q psy574 109 TTVSASSIIVFECSVGGDA---VL--TVHWKRLGSAM-----------------PEDRMSVL-PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p---~~--~i~W~k~~~~l-----------------~~~~~~~~-~~~~L~I~~v~~~D~G~ 165 (977)
+.+..|++++|.|.+...+ .. ...|.++...+ ...+.... .+.+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 4578899999999984322 22 34455543321 01122222 45689999999999999
Q ss_pred EEEEEEeC--Cee---EEEEEEEEEe
Q psy574 166 YVCEAENA--VGK---ISASATLTVQ 186 (977)
Q Consensus 166 Y~C~a~n~--~g~---~~~~~~L~V~ 186 (977)
|.|.+... .+. ....+.|.|.
T Consensus 84 Y~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 84 YQCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEEecCCCceEEEEcceEEEEEE
Confidence 99998643 232 2455666664
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.41 E-value=0.00023 Score=61.11 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=50.2
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-------------CCCceEEe-----ccceEEEccCcc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-------------PEDRMSVL-----PSRSLQLSDVRL 160 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-------------~~~~~~~~-----~~~~L~I~~v~~ 160 (977)
+..|..+.+.+|++++|.|...+.. ...+.|+|.. ..+ ..+++... ....|.|.+++.
T Consensus 4 ltQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~ 83 (111)
T d1cd0a_ 4 LNQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT 83 (111)
T ss_dssp EECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred EecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence 3446678899999999999986543 3458999952 111 12344333 224799999999
Q ss_pred CCCeEEEEEEEeC
Q psy574 161 EDAGEYVCEAENA 173 (977)
Q Consensus 161 ~D~G~Y~C~a~n~ 173 (977)
+|+|.|.|.+...
T Consensus 84 ~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 84 EDEADYYCQSYDA 96 (111)
T ss_dssp GGCEEEEEEEEET
T ss_pred ccCcEEEEeeccC
Confidence 9999999987654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.40 E-value=0.00025 Score=61.01 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=48.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc------CceEEEEEECC--eeC-------------CCCceEEe---ccceEEEcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD------AVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSD 157 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~------p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~ 157 (977)
+.+.|....+.+|++++|.|...+. ....+.|||.. ..+ ...++... ....|.|.+
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~ 83 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS 83 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence 3455777889999999999986431 22459999952 211 11232222 224699999
Q ss_pred CccCCCeEEEEEEEe
Q psy574 158 VRLEDAGEYVCEAEN 172 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n 172 (977)
++.+|+|.|.|.+..
T Consensus 84 l~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 84 VQAEDLAVYYCKQSY 98 (113)
T ss_dssp CCGGGCEEEEEEECS
T ss_pred cccCCCeEEEecccC
Confidence 999999999997653
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.39 E-value=0.00039 Score=59.57 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=49.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------C---------CCceEEe----ccceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------P---------EDRMSVL----PSRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------~---------~~~~~~~----~~~~L~I~~v~ 159 (977)
+.+.|....+.+|++++|.|...+ ....+.|||.. ... . ..++... ....|.|.+++
T Consensus 4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (110)
T d2aq2a1 4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT 82 (110)
T ss_dssp EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence 456677888999999999998754 34579999942 110 0 0111111 23569999999
Q ss_pred cCCCeEEEEEEEeC
Q psy574 160 LEDAGEYVCEAENA 173 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~ 173 (977)
.+|+|.|.|.+...
T Consensus 83 ~~Dsa~YyCa~~~~ 96 (110)
T d2aq2a1 83 PSQTSVYFCASGGG 96 (110)
T ss_dssp GGGCEEEEEEEEET
T ss_pred HhhCEEEEEeeCCC
Confidence 99999999987653
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.38 E-value=0.00038 Score=59.32 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=48.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
+..+| ...+.+|++++|.|...+.. ...+.|||. +..+ ..+++... .+..|.|.+++.
T Consensus 4 ~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~ 82 (110)
T d1oaql_ 4 VTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQT 82 (110)
T ss_dssp EEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCG
T ss_pred EeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCc
Confidence 34444 57789999999999985432 234889984 2111 12343332 335799999999
Q ss_pred CCCeEEEEEEEeC
Q psy574 161 EDAGEYVCEAENA 173 (977)
Q Consensus 161 ~D~G~Y~C~a~n~ 173 (977)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (110)
T d1oaql_ 83 EDEAIYFCALWYS 95 (110)
T ss_dssp GGCEEEEEEEEET
T ss_pred cccEeEEEEcccC
Confidence 9999999987654
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00016 Score=63.05 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=46.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC--eEEEEeC--CEE---ee----------cCCCceEEEec---CcEEEEcCCCC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKN--GHP---ID----------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~--g~~---l~----------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+|..+.+.+|++|+|.|....+.... .+.|+|. |+. +. ...+.+..... ...|.|.+++.
T Consensus 5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~ 84 (118)
T d1i8lc_ 5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA 84 (118)
T ss_dssp CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence 47778999999999999873333322 5889983 221 11 00011111111 13699999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 85 ~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 85 MDTGLYICKVEL 96 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCCEEEEEeEec
Confidence 999999998764
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.35 E-value=0.00059 Score=58.47 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=53.3
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeee---------cCCCccccEEEEEccCCceEEEEeeccc
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLI---------YPGDRVDNIQAEITSDGMNLLKIQNVSR 259 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~---------~~~~~~~~~~~~~~~~g~s~L~I~~v~~ 259 (977)
..|....+.+|++++|.|...+. ...+.|+|.. . ..++ .......++......+....|+|.+++.
T Consensus 4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~ 82 (111)
T d2esve1 4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL 82 (111)
T ss_dssp EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence 34677789999999999986443 4579999752 1 1111 1122245666555433446899999999
Q ss_pred CCCCeEEEEEEEc
Q psy574 260 TAAPLIILCLGVN 272 (977)
Q Consensus 260 ~d~G~Y~~C~a~n 272 (977)
+|+|.|. |.+..
T Consensus 83 ~Dsa~Yy-Ca~~~ 94 (111)
T d2esve1 83 EDSGVYF-CASSQ 94 (111)
T ss_dssp GGCEEEE-EEEES
T ss_pred CCCceEE-EeeeC
Confidence 9999999 87654
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.34 E-value=0.00085 Score=57.55 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=52.5
Q ss_pred cCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e--eeee---------cCCCccccEEEEEccCCceEEEEeecccC
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N--RSLI---------YPGDRVDNIQAEITSDGMNLLKIQNVSRT 260 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~---------~~~~~~~~~~~~~~~~g~s~L~I~~v~~~ 260 (977)
.|....+.+|++++|.|...+ ....+.|++.. . .+.+ .......++...........|+|.+++.+
T Consensus 5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (112)
T d1kgce1 5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE 83 (112)
T ss_dssp ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence 466778899999999998643 34579999842 1 1111 11122445655544334478999999999
Q ss_pred CCCeEEEEEEEc
Q psy574 261 AAPLIILCLGVN 272 (977)
Q Consensus 261 d~G~Y~~C~a~n 272 (977)
|+|.|. |.+..
T Consensus 84 Dsa~Yy-Ca~~~ 94 (112)
T d1kgce1 84 DSAVYL-CASSL 94 (112)
T ss_dssp GCEEEE-EEEES
T ss_pred CCEEEE-EeeeC
Confidence 999999 97754
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.34 E-value=0.00026 Score=59.97 Aligned_cols=69 Identities=26% Similarity=0.369 Sum_probs=47.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCee--C-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA--M-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~--l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++++|.|.... ....+.||+.... . ...++... .+..|.|.+++.+|+
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds 81 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA 81 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence 345677788999999999998743 2345899996311 0 11222222 224799999999999
Q ss_pred eEEEEEEE
Q psy574 164 GEYVCEAE 171 (977)
Q Consensus 164 G~Y~C~a~ 171 (977)
|.|.|.+.
T Consensus 82 a~YyCa~~ 89 (104)
T d1yqvl1 82 ATYYCQQW 89 (104)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99999754
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.33 E-value=0.00046 Score=59.33 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=55.0
Q ss_pred EEecCCCcEEeeCCeEEEEEEEecC--CCCeEEEEEc--CeeeeecCCCccccEEEEEcc-CCceEEEEeecccCCCCeE
Q psy574 191 VRERPSDLRLEVGRDAVFLCGIEGS--PPPSTFWMLE--GNRSLIYPGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 191 ~~~~p~~~~v~~G~~v~L~C~~~g~--p~~~i~W~~~--g~~~~~~~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y 265 (977)
+...|..+.+.+|++++|.|...+. ....+.|++. +..... .....+++...... .....|+|.+++.+|+|.|
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y 81 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ-SISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY 81 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE-ECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee-eeeecccccceeECCCCceeeeecccccCCcceE
Confidence 3445777888999999999998753 3456899974 221111 11234566655543 2336899999999999999
Q ss_pred EEEEEEc
Q psy574 266 ILCLGVN 272 (977)
Q Consensus 266 ~~C~a~n 272 (977)
. |.+..
T Consensus 82 y-Ca~~~ 87 (113)
T d1vesa_ 82 K-CQAFY 87 (113)
T ss_dssp E-EEEEE
T ss_pred e-eeeec
Confidence 9 98754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.33 E-value=0.00016 Score=61.57 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=50.0
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+.+.|....+.+|++|+|.|.........+.|||.. ..+ ...++... ....|.|.+++.+|+
T Consensus 4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d3cx5k1 4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI 83 (107)
T ss_dssp EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence 345677788999999999999866655679999852 110 01122111 235799999999999
Q ss_pred eEEEEEEE
Q psy574 164 GEYVCEAE 171 (977)
Q Consensus 164 G~Y~C~a~ 171 (977)
|.|.|.+.
T Consensus 84 a~YyCa~~ 91 (107)
T d3cx5k1 84 ATYFCQHH 91 (107)
T ss_dssp SEEEEEEC
T ss_pred CcEEeeeC
Confidence 99999754
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.32 E-value=0.00044 Score=59.40 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=52.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee--------------cCCCceEEEe--cCcEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID--------------FENSKRLRLV--DGTNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~--------------~~~~~r~~~~--~~g~L~I~~v~ 69 (977)
+.+.|..+.+.+|++++|.|.. .+.-...+.|||. |+.+. .....|+... .+..|.|..++
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~ 82 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN 82 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEE-SCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred EEeCCCeEEECCCCCEEEEEEE-ecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence 5677888999999999999987 3333457999983 32211 1112344433 24579999999
Q ss_pred CCCCeEEEEEEEe
Q psy574 70 KTDDGRYQCVVKN 82 (977)
Q Consensus 70 ~~D~G~Y~C~a~n 82 (977)
.+|++.|.|....
T Consensus 83 ~~dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 83 MSQGRTLYCTCSA 95 (112)
T ss_dssp CCSCEEEEEEEES
T ss_pred ccCCccEEEEEec
Confidence 9999999998753
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.31 E-value=0.00027 Score=61.10 Aligned_cols=84 Identities=17% Similarity=0.398 Sum_probs=54.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------C------CCceEEe-----ccceEEEccCccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------P------EDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------~------~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
+...|....+.+|++++|.|...+. ...+.|||.. ..+ . ..++... ....|.|.+++.+
T Consensus 3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (115)
T d1ogad1 3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG 81 (115)
T ss_dssp CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence 3455777889999999999998543 3479999952 111 0 1122221 2347999999999
Q ss_pred CCeEEEEEEEeCCeeE--EEEEEEEEe
Q psy574 162 DAGEYVCEAENAVGKI--SASATLTVQ 186 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~--~~~~~L~V~ 186 (977)
|+|.|.|.+....+.. -...+|+|.
T Consensus 82 Dsa~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 82 DTGLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp GCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred ceeeEcccccCCCCCcEECCCEEEEEe
Confidence 9999999877543321 123455554
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.30 E-value=0.00028 Score=60.06 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=49.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---C----------CCCceEEe---ccceEEEccCccCCCeE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---M----------PEDRMSVL---PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---l----------~~~~~~~~---~~~~L~I~~v~~~D~G~ 165 (977)
..|....+.+|++++|.|.........+.|||.. .. + ..+++... ....|.|.+++.+|+|.
T Consensus 4 tQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~ 83 (108)
T d1nfde1 4 IQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA 83 (108)
T ss_dssp ECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred ECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence 3466788899999999998854444568999942 11 1 11234332 23479999999999999
Q ss_pred EEEEEEe
Q psy574 166 YVCEAEN 172 (977)
Q Consensus 166 Y~C~a~n 172 (977)
|.|.+..
T Consensus 84 YyCA~~~ 90 (108)
T d1nfde1 84 YYCLSSY 90 (108)
T ss_dssp EEEEEEE
T ss_pred EEEEeec
Confidence 9998764
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.29 E-value=0.00025 Score=60.85 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=48.0
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc----CceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCcc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD----AVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~----p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
.+.|....+.+|++|+|.|..... ....+.|||. +... ...++... .+..|.|.+++.
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 84 (111)
T d1j05a_ 5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA 84 (111)
T ss_dssp EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence 345667788999999999987321 2334999995 2211 11233332 234799999999
Q ss_pred CCCeEEEEEEEe
Q psy574 161 EDAGEYVCEAEN 172 (977)
Q Consensus 161 ~D~G~Y~C~a~n 172 (977)
+|+|.|.|.+.+
T Consensus 85 ~Dsa~YyCa~~~ 96 (111)
T d1j05a_ 85 DDVATYYCQQTN 96 (111)
T ss_dssp GGCEEEEEEECS
T ss_pred ccCccEEEeecC
Confidence 999999998654
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00084 Score=54.93 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=55.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEE-EEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~-W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|.-+.+.+|+++++.|.+ ..|..++. |.+++..+. .+...+.....-.++|.+++..|.|.|.|.|....
T Consensus 11 ~p~~V~v~eg~~~vIPC~v--T~P~~~VtL~~~~~~~~~-p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g 82 (95)
T d1fltx_ 11 IPEIIHMTEGRELVIPCRV--TSPNITVTLKKFPLDTLI-PDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNG 82 (95)
T ss_dssp SCEEEEECTTSCEEECCCB--SCTTSCCEEEETTTEEEC-CCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEEeCCCCEEEEccC--CCCCceeEEEeccCCccC-CCCCEEEECCCCCEEEeCCCcccCeEEEEEEEECC
Confidence 3556889999999999998 46777765 455777763 34456777766779999999999999999998653
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.27 E-value=0.00037 Score=59.89 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=49.1
Q ss_pred CCCceEEeCCCeEEEEEEeccc---CceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 105 GPKDTTVSASSIIVFECSVGGD---AVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~---p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
.|....+.+|++|+|.|...+. ....+.|||.. ..+ ..+++... .+..|.|.+++.+|+
T Consensus 6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 85 (112)
T d1lgva1 6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE 85 (112)
T ss_dssp CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence 3677899999999999998543 22458999852 111 11222222 335799999999999
Q ss_pred eEEEEEEEeCC
Q psy574 164 GEYVCEAENAV 174 (977)
Q Consensus 164 G~Y~C~a~n~~ 174 (977)
|.|.|.+.+..
T Consensus 86 a~YyCa~~~~~ 96 (112)
T d1lgva1 86 ADYYCSSYDGS 96 (112)
T ss_dssp EEEEEEEECSS
T ss_pred EEEEEeeecCC
Confidence 99999876543
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.25 E-value=0.00036 Score=59.95 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=49.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc-----CceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD-----AVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDV 158 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~-----p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v 158 (977)
+.+.|....+.+|++|+|.|...+. ....+.||+.. ... ...++... .+..|.|.++
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~ 84 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 84 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence 4456778889999999999997432 22469999852 111 11233332 2247999999
Q ss_pred ccCCCeEEEEEEEe
Q psy574 159 RLEDAGEYVCEAEN 172 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n 172 (977)
+.+|+|.|.|...+
T Consensus 85 ~~~DsavYyCa~~~ 98 (113)
T d1n4xl_ 85 EAEDLGIYYCFQGS 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred CcccCEEEEEEECC
Confidence 99999999996543
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.23 E-value=0.00034 Score=60.29 Aligned_cols=72 Identities=22% Similarity=0.523 Sum_probs=49.4
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC------CC-----CceE-Ee-----ccceEEEccCccCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM------PE-----DRMS-VL-----PSRSLQLSDVRLED 162 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l------~~-----~~~~-~~-----~~~~L~I~~v~~~D 162 (977)
+...|....+.+|++++|.|..... ...+.|||.. ..+ .. .... .. ....|.|.+++.+|
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 82 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED 82 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence 3455778889999999999998643 3579999942 111 00 1111 00 22369999999999
Q ss_pred CeEEEEEEEeCC
Q psy574 163 AGEYVCEAENAV 174 (977)
Q Consensus 163 ~G~Y~C~a~n~~ 174 (977)
+|.|.|.+....
T Consensus 83 sa~YyCa~~~~~ 94 (113)
T d1h5ba_ 83 SGTYFCAAEASS 94 (113)
T ss_dssp CEEEEEEEECSS
T ss_pred CEEEEEEecCCC
Confidence 999999887543
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=0.00042 Score=58.31 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=52.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeC--CEEe--------------ecCCCceEEEecCc-----EEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN--GHPI--------------DFENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~--g~~l--------------~~~~~~r~~~~~~g-----~L~I 65 (977)
.++.....+.+|++++|.|.+ .|... ..+.|+|. |+.+ ...-.+|+++..+. .|.|
T Consensus 4 L~eSG~~lvkPg~sl~LsC~~-SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~ 82 (117)
T d1c5db1 4 LLESGPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKM 82 (117)
T ss_dssp EEEECCSEECTTSCEEEEEEE-CSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEE
T ss_pred EeeECCceECCCCCeEEEEEE-cCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccc
Confidence 456777889999999999999 55443 46788872 2211 12235688887542 4999
Q ss_pred cCCCCCCCeEEEEEEE
Q psy574 66 QDSRKTDDGRYQCVVK 81 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~ 81 (977)
++++.+|++.|.|...
T Consensus 83 ~sL~~eDtAvYYCAr~ 98 (117)
T d1c5db1 83 NSLQTEDTAIYFCTRE 98 (117)
T ss_dssp CSCCGGGCEEEEEEEC
T ss_pred cccccCcceEEEEecc
Confidence 9999999999999643
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00012 Score=61.33 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=48.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCcEE---EEcCCCCCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNL---AIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~L---~I~~v~~~D~G~Y~C~a~ 81 (977)
|++++-+.. .+..|+.++|.|.+...+|. ..|.|.|||+.+............+|+. ..-.+..+|.+.|+|++.
T Consensus 6 P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~ 84 (100)
T d1k5nb_ 6 PKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVN 84 (100)
T ss_dssp CEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEE
T ss_pred CeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEE
Confidence 444443322 24678999999999444565 4899999999984322222333445532 122334567779999998
Q ss_pred ecC
Q psy574 82 NVA 84 (977)
Q Consensus 82 n~~ 84 (977)
...
T Consensus 85 H~s 87 (100)
T d1k5nb_ 85 HVT 87 (100)
T ss_dssp CTT
T ss_pred eCC
Confidence 753
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.22 E-value=0.00079 Score=56.82 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=52.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|++++|.|.+ .|.. ...+.|+|. |+- |. ..-.+|+++..+. .|.
T Consensus 3 L~esg~~~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~ 81 (117)
T d1um5h1 3 LQQSGPVLVKPGGSVKMSCKA-SEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLE 81 (117)
T ss_dssp EEECCCEEECTTCCEEEEEEE-SSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-ccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeec
Confidence 457778999999999999999 5543 346889872 221 21 1124678776432 499
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|++++.+|++.|.|...
T Consensus 82 m~sL~~eDtAvYYCAr~ 98 (117)
T d1um5h1 82 LSSLTSEDSAVYYCARS 98 (117)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ccccCCCcceEEEEeec
Confidence 99999999999999654
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.22 E-value=0.00037 Score=59.80 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=48.4
Q ss_pred CCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G 164 (977)
.|....+.+|++++|.|...+. ....+.||+... .. ..+++... ....|.|.+++.+|+|
T Consensus 6 Qp~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa 85 (111)
T d1rzfl1 6 QPPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (111)
T ss_dssp CCSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred eCcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCc
Confidence 3557889999999999998543 234699998521 10 11233332 2357999999999999
Q ss_pred EEEEEEEeC
Q psy574 165 EYVCEAENA 173 (977)
Q Consensus 165 ~Y~C~a~n~ 173 (977)
.|.|.+...
T Consensus 86 ~YyCA~~~~ 94 (111)
T d1rzfl1 86 DYYCGTWDS 94 (111)
T ss_dssp EEEEEEEET
T ss_pred ceEEeecCC
Confidence 999987654
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.21 E-value=0.00045 Score=59.24 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=47.2
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-----CceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-----AVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVR 159 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-----p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~ 159 (977)
.+.|....+.+|++|+|.|...+. ....+.||+.. ... ...++... ....|.|.+++
T Consensus 5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~ 84 (112)
T d1mjul1 5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE 84 (112)
T ss_dssp ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC
T ss_pred EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc
Confidence 455777889999999999987542 24568999852 111 01233222 22469999999
Q ss_pred cCCCeEEEEEE
Q psy574 160 LEDAGEYVCEA 170 (977)
Q Consensus 160 ~~D~G~Y~C~a 170 (977)
.+|++.|.|..
T Consensus 85 ~~DsAvYyCa~ 95 (112)
T d1mjul1 85 AEDVGVYYCLQ 95 (112)
T ss_dssp GGGCEEEEEEE
T ss_pred ccCCceEEEEe
Confidence 99999999953
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.21 E-value=0.0008 Score=57.49 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=53.1
Q ss_pred ecCCCcEEeeCCeEEEEEEEecC----CCCeEEEEEcC--ee--eeecC-----CCccccEEEEEccCCceEEEEeeccc
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGS----PPPSTFWMLEG--NR--SLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSR 259 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~----p~~~i~W~~~g--~~--~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~ 259 (977)
..|..+.+.+|++++|.|..... ....+.|++.. .. .++.. .....++..... .....|+|.+++.
T Consensus 6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~-~~~~~L~I~~~~~ 84 (111)
T d2gsia1 6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGS-GTDFTLNIHPVEE 84 (111)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCG
T ss_pred eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecC-CCchhcccccccc
Confidence 44677789999999999987532 22358999852 21 11111 112356766543 3457899999999
Q ss_pred CCCCeEEEEEEEcC
Q psy574 260 TAAPLIILCLGVNA 273 (977)
Q Consensus 260 ~d~G~Y~~C~a~n~ 273 (977)
+|++.|. |.+...
T Consensus 85 ~DsA~Yy-Ca~~~~ 97 (111)
T d2gsia1 85 EDAATYY-CSHIRE 97 (111)
T ss_dssp GGCEEEE-EEECSS
T ss_pred cCCceEE-EEECCC
Confidence 9999999 976543
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.20 E-value=0.00052 Score=57.28 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=53.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce--EEe-ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM--SVL-PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|. ..|..|++|+|.|... .+...+.|+|+|........ ... ....+.|..+...|+|.|+|......
T Consensus 5 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~ 82 (99)
T d1nkra2 5 EKPSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD 82 (99)
T ss_dssp CCCEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred CCCEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence 4677777774 4778999999999874 34567999999865432111 111 22346788899999999999876543
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00031 Score=59.72 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=52.5
Q ss_pred cEEeeCCeEEEEEEEecCCC----CeEEEEEcCeeeeecCCC-------ccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 198 LRLEVGRDAVFLCGIEGSPP----PSTFWMLEGNRSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 198 ~~v~~G~~v~L~C~~~g~p~----~~i~W~~~g~~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
+.+..|++++|.|....... ..+.|.+++..+...... ..++..... .|..+|.|.+++.+|+|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~--~g~~sL~I~~v~~~D~G~Y~ 81 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI--TNNLSIVILALRPSDEGTYE 81 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES--TTTTEEEECSCCGGGCEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc--CCcEEEEECcCChHHCeEEE
Confidence 46789999999997753222 357898887654322211 134444433 35569999999999999999
Q ss_pred EEEEEcCCCce
Q psy574 267 LCLGVNAAGSD 277 (977)
Q Consensus 267 ~C~a~n~~g~~ 277 (977)
|.+.+..+..
T Consensus 82 -C~V~~~~~~~ 91 (105)
T d1dr9a1 82 -CVVLKYEKDA 91 (105)
T ss_dssp -EEEEECCTTS
T ss_pred -EEEEeCCCCC
Confidence 9887665444
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.19 E-value=0.00042 Score=58.33 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=52.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.++.....+.+|++++|.|.+ .|.. ...+.|+|. |+- |. ..-.+|+++..+. .|.
T Consensus 4 L~esG~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~ 82 (117)
T d1jpth1 4 LVESGGGLVQPGGSLRLSCAA-SGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQ 82 (117)
T ss_dssp EEEECCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred EeeECCceECCCCCEEEEEEE-cCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEec
Confidence 456778899999999999999 5543 346788772 211 11 2235788887542 399
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|++++.+|++.|.|...
T Consensus 83 m~~L~~eDTAvYYCAr~ 99 (117)
T d1jpth1 83 MNSLRAEDTAVYYCARD 99 (117)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ccccCCCCceEEEEeec
Confidence 99999999999999653
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.17 E-value=0.00086 Score=56.63 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=53.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC--CeEEEEe--CCEEe------e---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKK--NGHPI------D---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k--~g~~l------~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.++.....+.+|++++|.|.+ .|... ..+.|+| -|+.+ . ..-.+|+++..|. .|.
T Consensus 4 L~eSG~~~vkpg~sl~LsC~~-SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~ 82 (118)
T d2fbjh1 4 LLESGGGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ 82 (118)
T ss_dssp EEEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred EeeECCceECCCCCEEEEEEE-CCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecc
Confidence 456777899999999999998 55433 3577886 22211 1 1225688887542 399
Q ss_pred EcCCCCCCCeEEEEEEEec
Q psy574 65 IQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~ 83 (977)
|++++.+|++.|.|.....
T Consensus 83 ~~sL~~eDtAvYYCAr~~~ 101 (118)
T d2fbjh1 83 MSKVRSEDTALYYCARLHY 101 (118)
T ss_dssp ECSCCGGGCEEEEEEEEET
T ss_pred ccccCCCcceEEEeeEecC
Confidence 9999999999999986543
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.17 E-value=0.00023 Score=61.78 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=53.0
Q ss_pred cCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--e-e-eeecC-----CCccccEEEEEccCCceEEEEeecccCCCCe
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--N-R-SLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~-~-~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~ 264 (977)
.|..+.+.+|++++|.|...+.-...+.|++.. . + .+... .....++..... .....|.|.+++.+|+|.
T Consensus 7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~-~~~~~L~I~~~~~~Dsav 85 (119)
T d1f3rb2 7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-GTDYTLTISSLQPEDVAT 85 (119)
T ss_dssp ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-BTEEEEEECSCCGGGCSE
T ss_pred cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCC-CCEEEEEcccCccCCCeE
Confidence 456667889999999998876555679999853 1 1 11111 112455665543 344689999999999999
Q ss_pred EEEEEEEc
Q psy574 265 IILCLGVN 272 (977)
Q Consensus 265 Y~~C~a~n 272 (977)
|. |.+..
T Consensus 86 Yy-Ca~~~ 92 (119)
T d1f3rb2 86 YF-CYQYN 92 (119)
T ss_dssp EE-EEEES
T ss_pred EE-eeccC
Confidence 99 87654
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.16 E-value=0.00044 Score=59.42 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=48.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccC-ceEEEEEEC--CeeC-------------CCCceEEec---cceEEEccCccCCCe
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRL--GSAM-------------PEDRMSVLP---SRSLQLSDVRLEDAG 164 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~--~~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~G 164 (977)
..|....+.+|++|+|.|...+.. ...+.|||. +..+ ...++.+.. ...|.|.+++.+|+|
T Consensus 3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa 82 (112)
T d1kgcd1 3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA 82 (112)
T ss_dssp ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence 456678899999999999986543 345899995 2211 011222222 246999999999999
Q ss_pred EEEEEEEe
Q psy574 165 EYVCEAEN 172 (977)
Q Consensus 165 ~Y~C~a~n 172 (977)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (112)
T d1kgcd1 83 VYYCILPL 90 (112)
T ss_dssp EEEEECCC
T ss_pred eEeeeEec
Confidence 99997653
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.16 E-value=0.00077 Score=58.52 Aligned_cols=71 Identities=23% Similarity=0.416 Sum_probs=50.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEEC--CeeC-------------CCCceEEe-----ccceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRL--GSAM-------------PEDRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~--~~~l-------------~~~~~~~~-----~~~~L~I~~v~ 159 (977)
++..+....+.+|++++|.|.+.+.. ...+.|||. ++.+ ..+++... ....|.|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 45566677899999999999986543 457999984 2211 12344433 12479999999
Q ss_pred cCCCeEEEEEEEe
Q psy574 160 LEDAGEYVCEAEN 172 (977)
Q Consensus 160 ~~D~G~Y~C~a~n 172 (977)
.+|+|.|.|....
T Consensus 84 ~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 84 ERDEGSYYCACDT 96 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCCceeecCccc
Confidence 9999999998654
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.16 E-value=0.00033 Score=59.14 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=52.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|++++|.|.+ .|. ....+.|+|. |+. |. ..-.+|+++..|. .|.
T Consensus 4 L~esg~~~~kPg~sv~LsC~~-SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~ 82 (117)
T d1iqdb1 4 LVQSGAEVKKPGASVKVSCKV-SGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYME 82 (117)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-cCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEe
Confidence 457777889999999999998 554 2345788872 221 11 1225678777532 499
Q ss_pred EcCCCCCCCeEEEEEEEe
Q psy574 65 IQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n 82 (977)
|++++.+|++.|.|....
T Consensus 83 i~~L~~eDtAvYYCA~~~ 100 (117)
T d1iqdb1 83 LSSLRSDDTAVYYCAVPD 100 (117)
T ss_dssp ECSCCGGGCEEEEEEECS
T ss_pred ecccCcCcceEEEEeEcC
Confidence 999999999999998654
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.15 E-value=0.0004 Score=59.44 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=49.0
Q ss_pred ecccceEEeCCCcEEEEEECCCCC----CCCeEEEEeC--CEEee--------------cCCCceEEEecC-----cEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH----PEPTLVWKKN--GHPID--------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~----P~~~v~W~k~--g~~l~--------------~~~~~r~~~~~~-----g~L~ 64 (977)
.++....+.+|++++|.|.+ .|. ....+.|+|. |+.+. ..-.+|+++..+ -.|.
T Consensus 5 ~qsg~~~v~PG~sv~LsC~~-SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~ 83 (120)
T d2agjh1 5 KESGPTLVKPTQTLTLTCTF-SGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLT 83 (120)
T ss_dssp ECCCCSBCCSSSEEEEEEEE-ESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEE
T ss_pred EeECCeeECCCCCEEEEEEE-cccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeee
Confidence 34556778999999999987 332 2346889972 22111 111467887643 2499
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|++++.+|++.|.|...
T Consensus 84 i~~l~~eDsAvYyCAr~ 100 (120)
T d2agjh1 84 LTNLDPVDTATYYCART 100 (120)
T ss_dssp EESCCGGGCEEEEEEEE
T ss_pred EEeeeeccceEEeeEec
Confidence 99999999999999643
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.15 E-value=0.0012 Score=56.28 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=51.6
Q ss_pred ecCCCcEEeeCCeEEEEEEEecCC-----CCeEEEEEcC--e--eeeec-----CCCccccEEEEEccCCceEEEEeecc
Q psy574 193 ERPSDLRLEVGRDAVFLCGIEGSP-----PPSTFWMLEG--N--RSLIY-----PGDRVDNIQAEITSDGMNLLKIQNVS 258 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~g~p-----~~~i~W~~~g--~--~~~~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~ 258 (977)
..|..+.+.+|++++|.|...+.. ...+.|++.. . ..++. ......++..... .....|.|.+++
T Consensus 6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~-~~~~~L~I~~~~ 84 (112)
T d1ncwl1 6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGS-GTDFTLKISRVE 84 (112)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCC
T ss_pred CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCC-CCEEEEEECccc
Confidence 346777899999999999875432 2358899862 1 11111 1112456665543 344689999999
Q ss_pred cCCCCeEEEEEEE
Q psy574 259 RTAAPLIILCLGV 271 (977)
Q Consensus 259 ~~d~G~Y~~C~a~ 271 (977)
.+|+|.|. |...
T Consensus 85 ~eDsAvYY-C~~~ 96 (112)
T d1ncwl1 85 AEDLGVYY-CWQG 96 (112)
T ss_dssp GGGCEEEE-EEEC
T ss_pred cCcCEeEE-EEcC
Confidence 99999999 9543
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.14 E-value=0.00085 Score=55.44 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCeEEEEEEEecCCCCeEEEEEcC--e--eeee--cC--CCccccEEEEEccC-CceEEEEeecccCCCCeEEEEEEEcC
Q psy574 203 GRDAVFLCGIEGSPPPSTFWMLEG--N--RSLI--YP--GDRVDNIQAEITSD-GMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 203 G~~v~L~C~~~g~p~~~i~W~~~g--~--~~~~--~~--~~~~~~~~~~~~~~-g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
|++++|.|.........+.|+|.. . .++. .. ....+++....... ....|+|.+++.+|+|.|. |.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~Yy-Ca~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYL-CAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccce-eeEecC
Confidence 789999999887777789999843 1 1111 11 11245666654323 3468999999999999999 987644
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.12 E-value=0.00062 Score=57.38 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=51.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEe--------------ecCCCceEEEecC-----cEEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI--------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l--------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+++....+.+|++++|.|.+ .|.. ...+.|+|. |+-+ ...-.+|+++..+ ..|.|
T Consensus 4 L~eSG~~lvkPg~sl~LsC~~-SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i 82 (116)
T d7fabh1 4 LEQSGPGLVRPSQTLSLTCTV-SGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRL 82 (116)
T ss_dssp EEEECCSEECTTSCEEEEEEE-ESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-eeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccc
Confidence 456777889999999999998 5543 346788872 2211 1122467777643 24999
Q ss_pred cCCCCCCCeEEEEEEEe
Q psy574 66 QDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n 82 (977)
++++.+|++.|.|....
T Consensus 83 ~~L~~eDtAvYyCAr~~ 99 (116)
T d7fabh1 83 SSVTAADTAVYYCARNL 99 (116)
T ss_dssp CSCCGGGCEEEEEEEEC
T ss_pred cccccccceEEEeeeec
Confidence 99999999999997543
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.11 E-value=0.00051 Score=58.30 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=51.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeC--CEEe------e--------cCCCceEEEecCc-----EEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN--GHPI------D--------FENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~--g~~l------~--------~~~~~r~~~~~~g-----~L~I 65 (977)
.+++....+.+|++++|.|.+ .|... ..+.|+|. |+.+ . ..-.+|+++..|. .|.|
T Consensus 4 L~esG~~~vkPG~sl~LsC~~-SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i 82 (120)
T d1dn0b1 4 LQQWGAGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKL 82 (120)
T ss_dssp EEEECCCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EEeECCcEECCCCCEEEEEEE-ccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccc
Confidence 456777889999999999998 55443 45789872 2211 1 1224688887532 4999
Q ss_pred cCCCCCCCeEEEEEE
Q psy574 66 QDSRKTDDGRYQCVV 80 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a 80 (977)
++++.+|++.|.|..
T Consensus 83 ~~l~~eDtA~YYCAr 97 (120)
T d1dn0b1 83 SSVTAADTAVYYCAR 97 (120)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred cccccccccEEEEEe
Confidence 999999999999943
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.11 E-value=0.00046 Score=58.26 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=50.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeC--CEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN--GHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~--g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
..++....+.+|+++.|.|.+ .|... ..+.|+|. |+. |. ..-.+|+++..|. .|.
T Consensus 4 L~esg~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~ 82 (118)
T d2jelh1 4 LAQSGPELVRPGVSVKISCKG-SGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYME 82 (118)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEE
T ss_pred eEeECCceECCCCCEEEEEEE-cCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeec
Confidence 457778889999999999998 55443 36788872 221 11 1113677777542 499
Q ss_pred EcCCCCCCCeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a 80 (977)
|++++.+|++.|.|.-
T Consensus 83 ~~sL~~eDTAvYYCAr 98 (118)
T d2jelh1 83 LARLTSEDSAIYYCAR 98 (118)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ccccccCcceeeeEEE
Confidence 9999999999999953
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00023 Score=59.09 Aligned_cols=73 Identities=16% Similarity=0.320 Sum_probs=52.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEEccCccCCCeEEEEEEEeC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+|.+...|. ..|..|++|+|.|... .+...+.++|++..... ..........+.|.+++.+|+|.|+|.....
T Consensus 4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~ 79 (96)
T d1ugna1 4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 79 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence 566766675 4678999999999974 34567888998864321 0000113457999999999999999987543
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.10 E-value=0.0019 Score=56.20 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=52.6
Q ss_pred CCcEEeeCCeEEEEEEEecCC--CCeEEEEEcC--e--eeee----------cCCCccccEEEEEccC-CceEEEEeecc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSP--PPSTFWMLEG--N--RSLI----------YPGDRVDNIQAEITSD-GMNLLKIQNVS 258 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~~g--~--~~~~----------~~~~~~~~~~~~~~~~-g~s~L~I~~v~ 258 (977)
..+.+.+|++++|.|.+.|.. ...+.|++.. . +.++ ......+|+.+..... ....|+|.+++
T Consensus 9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~ 88 (123)
T d1hxmb1 9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE 88 (123)
T ss_dssp SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence 445678899999999998753 3468999852 1 1111 1112245788776433 34689999999
Q ss_pred cCCCCeEEEEEEEc
Q psy574 259 RTAAPLIILCLGVN 272 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n 272 (977)
.+|+|.|. |....
T Consensus 89 ~~Dsa~Yy-CA~~~ 101 (123)
T d1hxmb1 89 KQDIATYY-CALWE 101 (123)
T ss_dssp GGGCEEEE-EEEEE
T ss_pred cccCcEEE-EeeeC
Confidence 99999999 87644
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.10 E-value=0.0011 Score=56.67 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=51.8
Q ss_pred EEeCCCceeecCCCcEEEEEEEcc----CceEEEEEC------CEEcCCCCcEEEecC-----ceEEEeccCCCCCeEEE
Q psy574 296 ILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRG------EREVGSGPRVNVTGD-----GSLVLTDVTKEDSGEYT 360 (977)
Q Consensus 296 i~~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~------g~~l~~~~~~~~~~~-----~sl~I~~v~~~d~G~Y~ 360 (977)
+.+.|..+.+..|+.++|.|...+ ...+.|++. ...+....++....+ .+|+|.+++.+|+|.|.
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence 456677888999999999999875 356999972 222333344443321 25999999999999999
Q ss_pred EEEEcCC
Q psy574 361 CVVKSPH 367 (977)
Q Consensus 361 C~a~n~~ 367 (977)
|.+....
T Consensus 82 CA~~~~~ 88 (112)
T d1sq2n_ 82 CGLGVAG 88 (112)
T ss_dssp EEECBTT
T ss_pred EEEecCC
Confidence 9876543
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.10 E-value=0.00044 Score=58.57 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC---CeEEEEe--CCEEee--------------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE---PTLVWKK--NGHPID--------------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~---~~v~W~k--~g~~l~--------------~~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|++++|.|.+ .|... ..+.|.| -|+-++ ..-.+|+++..+. .|.
T Consensus 4 L~esG~~~vkPg~sl~LsC~~-SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~ 82 (119)
T d1ncwh1 4 LQQSGPGLVKPSQSLSLTCTV-TGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQ 82 (119)
T ss_dssp EEEESCSEECTTSCEEEEEEE-ESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EEeECCcEECCCCCEEEEEEE-ccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecc
Confidence 457778899999999999998 66543 2467877 232221 1224678877542 499
Q ss_pred EcCCCCCCCeEEEEEEEe
Q psy574 65 IQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n 82 (977)
|++++.+|++.|.|....
T Consensus 83 ~~sL~~eDTAvYYCAr~~ 100 (119)
T d1ncwh1 83 LNSVTTEDTATYYCAGLL 100 (119)
T ss_dssp ECSCCGGGCEEEEEEEEE
T ss_pred ccccccCCceEEEEeEec
Confidence 999999999999997543
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.10 E-value=0.00099 Score=56.48 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=51.3
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEe------e--------cCCCceEEEecCc-----EEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI------D--------FENSKRLRLVDGT-----NLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l------~--------~~~~~r~~~~~~g-----~L~I~ 66 (977)
++...-.+.+|++++|.|.+ .|.. ...+.|+|. |+-+ . ..-.+|+++..+. .|.|+
T Consensus 4 ~esg~~~vkPg~sl~LsC~~-SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~ 82 (119)
T d1kxvc_ 4 VESGGGTVPAGGSLRLSCAA-SGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMD 82 (119)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEEC
T ss_pred eeECCceECCCCCeEEEEEE-cCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccc
Confidence 45566789999999999998 5533 346789873 2111 1 1124688887543 49999
Q ss_pred CCCCCCCeEEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKN 82 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n 82 (977)
+++.+|++.|.|....
T Consensus 83 ~L~~eDtA~YYCAr~~ 98 (119)
T d1kxvc_ 83 SLKPDDTAMYYCKPSL 98 (119)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred cCCcCCcceEeeeecc
Confidence 9999999999997654
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0002 Score=59.43 Aligned_cols=64 Identities=22% Similarity=0.455 Sum_probs=44.1
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCc------EEEEcCCCCCCCeEEEEEEEecCc
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT------NLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g------~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
..|+.++|.|.+...+|.+.|.|++||+.+.... ...... .+| .|.+. ..+...|+|.+.+..-
T Consensus 14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~-~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l 84 (95)
T d1dr9a2 14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHL 84 (95)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE-EEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTC
T ss_pred CCCCEEEEEEEECcccCCCEEEEecCCcEecccc-eeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCC
Confidence 3678899999996668999999999999884322 111111 123 35554 4566799999987643
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.09 E-value=0.00095 Score=56.45 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=51.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEe--CCEEee-----------------cCCCceEEEecCc-----E
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKK--NGHPID-----------------FENSKRLRLVDGT-----N 62 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k--~g~~l~-----------------~~~~~r~~~~~~g-----~ 62 (977)
.+++....+.+|++++|.|.+ .|. ....+.|+| -|+-++ ..-.+|+++..+. .
T Consensus 4 L~esG~~~vkpG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~ 82 (120)
T d1dlfh_ 4 LEESGGGLVQPGGSMKLSCAT-SGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVY 82 (120)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEE
T ss_pred EeeECCceECCCCCeEEEEEE-CCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceec
Confidence 456777889999999999998 554 234678887 232221 1113578776432 4
Q ss_pred EEEcCCCCCCCeEEEEEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~ 81 (977)
|.|++++.+|++.|.|...
T Consensus 83 L~~~~L~~eDtAvYYCA~~ 101 (120)
T d1dlfh_ 83 LQMNTLRAEDTGIYYCTGI 101 (120)
T ss_dssp EEECSCCGGGCEEEEEEEE
T ss_pred cceeeccCCCceEEEeeEe
Confidence 9999999999999999654
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.08 E-value=0.00099 Score=56.61 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=52.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEe--CCEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKK--NGHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k--~g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.++.....+.+|++++|.|.+ .|.. ...+.|+| -|+. |. ..-.+|+++..+. .|.
T Consensus 4 L~esG~~lvkPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~ 82 (123)
T d1mqkh_ 4 LQESGGDLVQPGGSLKLSCAA-SGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQ 82 (123)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEE
T ss_pred EeeECCceECCCCCEEEEEEE-CcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccc
Confidence 456777889999999999998 5543 34578887 2221 11 1124678877532 399
Q ss_pred EcCCCCCCCeEEEEEEEec
Q psy574 65 IQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~ 83 (977)
|++++.+|++.|.|.....
T Consensus 83 i~~L~~eDtAvYYCAr~~~ 101 (123)
T d1mqkh_ 83 MSSLKSEDTAMYYCVRHEY 101 (123)
T ss_dssp ECSCCGGGCEEEEEEEEET
T ss_pred eeeeccCcccceeEEecCC
Confidence 9999999999999976543
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.08 E-value=0.0006 Score=57.41 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=51.2
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------ee--------cCCCceEEEecCc-----EEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------ID--------FENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~--------~~~~~r~~~~~~g-----~L~I 65 (977)
.+++....+.+|++++|.|.+ .|.. ...+.|+|. |+- +. ..-.+|+++..|. .|.|
T Consensus 4 L~esG~~~vkPg~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~ 82 (116)
T d1a2yb_ 4 LQESGPGLVAPSQSLSITCTV-SGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKM 82 (116)
T ss_dssp EEEECCSEECTTSCEEEEEEE-ESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred EEeECCceECCCCCeEEEEEE-cccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcce
Confidence 356677889999999999998 5543 346778872 221 11 2224678877532 4999
Q ss_pred cCCCCCCCeEEEEEEE
Q psy574 66 QDSRKTDDGRYQCVVK 81 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~ 81 (977)
++++.+|++.|.|.-.
T Consensus 83 ~~l~~eDTAvYYCAr~ 98 (116)
T d1a2yb_ 83 NSLHTDDTARYYCARE 98 (116)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred eeeeeccceEEEEEEe
Confidence 9999999999999754
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.08 E-value=0.0003 Score=60.10 Aligned_cols=72 Identities=18% Similarity=0.342 Sum_probs=50.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE------ee---------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP------ID---------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~------l~---------~~~~~r~~~~~~-----g~L~ 64 (977)
.+++....+.+|++++|.|.+ .|. ....+.|+|. |+. +. ..-.+|+++..+ ..|.
T Consensus 4 L~esg~~~~kpG~Sv~LsC~~-SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~ 82 (119)
T d1qnzh_ 4 LQQSGAELVKPGASVKMSCKA-SGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLE 82 (119)
T ss_dssp EEEECCCEECTTEEEEEEEEE-ETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred eEeECCceECCCCCEEEEEEE-eccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeee
Confidence 356777889999999999997 443 2345889872 221 11 112357777532 2499
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|++++.+|++.|.|...
T Consensus 83 i~~L~~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 83 FSRLTSDDSAVYYCAIH 99 (119)
T ss_dssp EEEECGGGCEEEEEEEC
T ss_pred ecccCccceeEEEEEEe
Confidence 99999999999999643
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00047 Score=53.65 Aligned_cols=63 Identities=21% Similarity=0.473 Sum_probs=45.2
Q ss_pred EeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCC-CCCeEEEEEEEe
Q psy574 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQCVVKN 82 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C~a~n 82 (977)
-..|.+|+|+|.- .....|.|.||++.+....+..........|.+.+..+ +++|.|.|.+..
T Consensus 7 sISGTtV~LTCP~---~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~ 70 (91)
T d1xiwa_ 7 SISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG 70 (91)
T ss_dssp EEETTEEEEECSS---CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred EEeCCEEEEECCC---CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence 4579999999943 24467999999999964433222222244688888876 899999999853
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.00029 Score=58.97 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=47.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCcEE---EEcCCCCCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNL---AIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~L---~I~~v~~~D~G~Y~C~a~ 81 (977)
|.+.+.|.. .+..|+.++|.|.+...+|. ..|.|++||+.+............+|+. ....+..++.+.|+|++.
T Consensus 5 P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~ 83 (99)
T d1lk2b_ 5 PQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVK 83 (99)
T ss_dssp CEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEE
T ss_pred CEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEE
Confidence 444444332 24568899999999544665 4899999999885332222233334431 112234566779999998
Q ss_pred ecC
Q psy574 82 NVA 84 (977)
Q Consensus 82 n~~ 84 (977)
...
T Consensus 84 H~s 86 (99)
T d1lk2b_ 84 HDS 86 (99)
T ss_dssp CTT
T ss_pred eCC
Confidence 753
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.07 E-value=0.00076 Score=58.47 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=48.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C--------------CCCceEEec-----cceEEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M--------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l--------------~~~~~~~~~-----~~~L~I 155 (977)
+.+.|..+...+|++++|.|.+.+.. ...+.|||.. .. | ..+++.+.. ...|.|
T Consensus 4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I 83 (120)
T d1ypzf1 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (120)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence 34455567778999999999985542 3568999952 11 1 012333322 135999
Q ss_pred ccCccCCCeEEEEEEEe
Q psy574 156 SDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n 172 (977)
.+++.+|+|.|.|....
T Consensus 84 ~~l~~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 84 YSLEEEDEAIYYCSYGE 100 (120)
T ss_dssp CSCCGGGCSEEEEEECC
T ss_pred cccccccceeEEEEEcC
Confidence 99999999999997653
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.001 Score=55.41 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred EeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc-eEEEEeecccCC
Q psy574 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTA 261 (977)
Q Consensus 185 V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d 261 (977)
|..+|.+.+.+.. .+..|+.++|.|.+.|+.+. .|.|.+||..+. .........+.+|. .......+..++
T Consensus 2 v~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~-----~~~~~~~~~~~dgty~~~s~l~v~~~~ 75 (100)
T d1k5nb_ 2 IQRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE-----KVEHSDLSFSKDWSFYLLYYTEFTPTE 75 (100)
T ss_dssp CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT-----TCEECCCEECTTSCEEEEEEEEECCCS
T ss_pred ccCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecC-----CccccceecCCCCcEEEEEEeEECCCC
Confidence 3456666554322 34578899999999986443 789999998762 11111223333453 223333445567
Q ss_pred CCeEEEEEEEcCCC
Q psy574 262 APLIILCLGVNAAG 275 (977)
Q Consensus 262 ~G~Y~~C~a~n~~g 275 (977)
.+.|+ |++.....
T Consensus 76 ~~~yt-C~V~H~sl 88 (100)
T d1k5nb_ 76 KDEYA-CRVNHVTL 88 (100)
T ss_dssp SCCEE-EEEECTTC
T ss_pred CCEEE-EEEEeCCC
Confidence 78999 99888644
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.04 E-value=0.00057 Score=57.57 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=50.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------eec---------CCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------IDF---------ENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~~---------~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|++++|.|.+ .|.. ...+.|+|. |+- |.. .-.+|+++..|. .|.
T Consensus 4 L~esg~~~~kPG~sl~LsC~~-SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~ 82 (118)
T d1nlbh1 4 LVQSGPELKKPGETVKISCKA-SGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQ 82 (118)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-cCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEee
Confidence 456777889999999999998 5533 345788872 221 211 114688877542 399
Q ss_pred EcCCCCCCCeEEEEE
Q psy574 65 IQDSRKTDDGRYQCV 79 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~ 79 (977)
|.+++.+|++.|.|.
T Consensus 83 ~~~L~~eDtAvYYCA 97 (118)
T d1nlbh1 83 INSLKNEDTATYFCA 97 (118)
T ss_dssp ECSCCGGGCEEEEEE
T ss_pred eeecccCcceEEEEe
Confidence 999999999999995
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.04 E-value=0.00061 Score=56.60 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=51.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEe--CCEE------ee-----------cCCCceEEEecCc-----E
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKK--NGHP------ID-----------FENSKRLRLVDGT-----N 62 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k--~g~~------l~-----------~~~~~r~~~~~~g-----~ 62 (977)
.+++....+.+|++++|.|.+ .|.. ..-+.|+| -|+. |. ..-.+|+++..|. .
T Consensus 4 L~eSG~~~vkPG~Sl~LsC~~-SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~ 82 (109)
T d2ck0h1 4 LQESGGGLVQPRGSLKLSCAA-SGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLY 82 (109)
T ss_dssp EEEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEE
T ss_pred EEeECCCeECCCCCeEEEEEE-CCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeE
Confidence 456778899999999999998 5433 34678887 2211 11 1123588877542 4
Q ss_pred EEEcCCCCCCCeEEEEEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~ 81 (977)
|.|++++.+|++.|.|.-.
T Consensus 83 L~i~sL~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 83 LQMNNLKTEDTGIYYCVRG 101 (109)
T ss_dssp EEECSCCGGGCEEEEEEEE
T ss_pred ecccCCCHhHCEEEEEEEc
Confidence 9999999999999999743
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.04 E-value=0.00098 Score=56.56 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=51.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeC--CEE------eec---------CCCceEEEecCc-----EEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKN--GHP------IDF---------ENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~--g~~------l~~---------~~~~r~~~~~~g-----~L~I 65 (977)
.++....+.+|++++|.|.+ .|... ..+.|+|. |+. |.. .-.+|+++..+. .|.|
T Consensus 6 ~~sg~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~ 84 (122)
T d1vgeh1 6 EQSGAEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL 84 (122)
T ss_dssp EECCCEEECTTCCEEEEEEE-CSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EecCCcEECCCCCEEEEEEE-cCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecc
Confidence 35778889999999999999 66543 45788872 211 111 124688777532 3999
Q ss_pred cCCCCCCCeEEEEEEE
Q psy574 66 QDSRKTDDGRYQCVVK 81 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~ 81 (977)
.+++.+|++.|.|...
T Consensus 85 ~~L~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 85 SSLRPEDTAVYYCARD 100 (122)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred cccCCCcceEEEEeec
Confidence 9999999999999764
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.00098 Score=55.39 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=50.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE------eccceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.+...|. ..|..|++|+|.|... .....+.++|++.......... .....+.|.+++.+|.|.|+|...
T Consensus 3 pkPsLsa~P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~ 80 (98)
T d1ugna2 3 IKPTLSAQPS-PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY 80 (98)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEE
T ss_pred CCCEEEeeCC-CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeE
Confidence 3577777774 4689999999999974 3456788899877644322111 122469999999999999999876
Q ss_pred eC
Q psy574 172 NA 173 (977)
Q Consensus 172 n~ 173 (977)
..
T Consensus 81 ~~ 82 (98)
T d1ugna2 81 DS 82 (98)
T ss_dssp CT
T ss_pred cC
Confidence 44
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.04 E-value=0.00052 Score=58.00 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=50.3
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEe--CCEEe------e---------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKK--NGHPI------D---------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k--~g~~l------~---------~~~~~r~~~~~~-----g~L~ 64 (977)
..++....+.+|++++|.|.+ .|.- ...+.|+| -|+-+ . ..-.+|+++..+ ..|.
T Consensus 4 L~qsg~~~~kPG~sl~LsC~~-SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~ 82 (117)
T d1mfah1 4 VQQSGTVVARPGASVKMSCKA-SGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYME 82 (117)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-cccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEee
Confidence 457888999999999999998 5532 34677877 22211 1 112347776543 2499
Q ss_pred EcCCCCCCCeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a 80 (977)
|++++.+|++.|.|.-
T Consensus 83 i~~L~~eDtAvYYCAr 98 (117)
T d1mfah1 83 LSSLTSEDSAVYYCTR 98 (117)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred ecccCCCcceEEEEec
Confidence 9999999999999964
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.03 E-value=0.00039 Score=58.31 Aligned_cols=72 Identities=22% Similarity=0.329 Sum_probs=51.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEe--CCEE------ee---------cCCCceEEEecCc-----EE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKK--NGHP------ID---------FENSKRLRLVDGT-----NL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k--~g~~------l~---------~~~~~r~~~~~~g-----~L 63 (977)
-..++....+.+|+++.|.|.+ .|.. ...+.|.| -|+- |. ..-.+|+++..+. .|
T Consensus 3 qL~esg~~~~kPg~sl~LsC~~-SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL 81 (116)
T d1mjuh1 3 QLQQPGAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYM 81 (116)
T ss_dssp EEECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred EEeeECCcEECCCCCEEEEEEE-ccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEe
Confidence 3467888999999999999999 5543 34577887 2221 11 1113578876432 49
Q ss_pred EEcCCCCCCCeEEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a 80 (977)
.|++++.+|++.|.|.-
T Consensus 82 ~~~sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 82 QLSSLTSDDSAVYYCAN 98 (116)
T ss_dssp EECSCCGGGCEEEEEEE
T ss_pred cccccCCCCceEEEEcc
Confidence 99999999999999964
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.002 Score=53.59 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=49.7
Q ss_pred eeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc-eEEEEeecccCCC
Q psy574 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAA 262 (977)
Q Consensus 186 ~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~ 262 (977)
+.+|.+.+.+.. ....|+.++|.|.+.|+.+. .|.|+++|..+. ...........+|. +......+..++.
T Consensus 2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~-----~~~~~~~~~~~dgtf~~~s~l~v~~~~~ 75 (99)
T d1lk2b_ 2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP-----KVEMSDMSFSKDWSFYILAHTEFTPTET 75 (99)
T ss_dssp CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT-----TCEEEEEEECTTCCEEEEEEEEECCCSS
T ss_pred CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecC-----CcEECceeECCCCCEEEEEEeEecCcCC
Confidence 345665543322 23468889999999986333 789999998753 11222233343443 2222333445677
Q ss_pred CeEEEEEEEcCCC
Q psy574 263 PLIILCLGVNAAG 275 (977)
Q Consensus 263 G~Y~~C~a~n~~g 275 (977)
+.|+ |++....-
T Consensus 76 ~~yt-C~V~H~sl 87 (99)
T d1lk2b_ 76 DTYA-CRVKHDSM 87 (99)
T ss_dssp CCEE-EEEECTTS
T ss_pred CEEE-EEEEeCCC
Confidence 7899 99987654
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0012 Score=57.09 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=43.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCC-CCC-eEEEEeC--CE--Eee----------cCCCceEE--EecC---cEEEEcC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH-PEP-TLVWKKN--GH--PID----------FENSKRLR--LVDG---TNLAIQD 67 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~-P~~-~v~W~k~--g~--~l~----------~~~~~r~~--~~~~---g~L~I~~ 67 (977)
.+......+.+|++++|.|...... +.. .+.|++. +. .+. .....|++ .... .+|.|.+
T Consensus 4 ~V~Q~p~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 83 (118)
T d1yjdc1 4 LVKQSPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQN 83 (118)
T ss_dssp CEECCSEEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEES
T ss_pred EEEcCCcEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECC
Confidence 3433346788999999999873222 222 2345552 11 110 11122333 2221 2599999
Q ss_pred CCCCCCeEEEEEEEe
Q psy574 68 SRKTDDGRYQCVVKN 82 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n 82 (977)
++.+|+|.|.|.+..
T Consensus 84 l~~~DsavYyCa~~~ 98 (118)
T d1yjdc1 84 LYVNQTDIYFCKIEV 98 (118)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCcccCeEEEEEEec
Confidence 999999999998764
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.02 E-value=0.00065 Score=57.89 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=50.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEe------ecC---------CCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI------DFE---------NSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l------~~~---------~~~r~~~~~~g-----~L~ 64 (977)
..++....+.+|++++|.|.+ .|.. ...+.|+|. |+.+ ... -.+|+++..+. .|.
T Consensus 4 L~qsg~~~vkpG~sl~LsC~~-SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~ 82 (120)
T d1pg7x1 4 LQQSGPELVKPGASVKISCKA-SGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIE 82 (120)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EeeECCcEECCCCCEEEEEEE-ccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcc
Confidence 456777889999999999998 4433 346789872 2221 111 13577775432 499
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|.+++.+|++.|.|...
T Consensus 83 i~~l~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 83 LVRLTSNDSAVYYCARE 99 (120)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ccccCCCcceEEEeeec
Confidence 99999999999999864
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.01 E-value=0.00063 Score=57.02 Aligned_cols=71 Identities=20% Similarity=0.371 Sum_probs=50.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.++.....+.+|++++|.|.+ .|.. ...+.|+|. |+- |. ..-.+|+++..+. .|.
T Consensus 4 L~eSG~~~vkpG~sl~LsC~~-SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~ 82 (114)
T d1indh1 4 LVESGGDSVKPGGSLKLSCAA-SGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQ 82 (114)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred EeeECCceECCCCCEEEEEEE-CccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeee
Confidence 456777889999999999998 5543 345778872 211 11 1124688887532 399
Q ss_pred EcCCCCCCCeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a 80 (977)
|++++.+|++.|.|..
T Consensus 83 ~~~L~~eDtAvYYCA~ 98 (114)
T d1indh1 83 LNSLRSEDTALYFCAS 98 (114)
T ss_dssp ECSCCGGGCEEEEEEC
T ss_pred eeeeccCcccEEEECC
Confidence 9999999999999964
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.01 E-value=5.8e-05 Score=62.97 Aligned_cols=66 Identities=23% Similarity=0.503 Sum_probs=46.4
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe-----ccceEEEccCccCCCeEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL-----PSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+|.+|++|+|.|.... ....+.|||. +..+ ..+++.+. ....|.|.+++.+|+|.|.|
T Consensus 3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 81 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 81 (96)
T ss_dssp CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence 46789999999998854 3457999984 2211 11233332 12369999999999999999
Q ss_pred EEEeCCe
Q psy574 169 EAENAVG 175 (977)
Q Consensus 169 ~a~n~~g 175 (977)
.+....|
T Consensus 82 A~~~~~g 88 (96)
T d1ymmd1 82 ATDTTSG 88 (96)
T ss_dssp EEEETTS
T ss_pred eEecCCC
Confidence 8876544
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.01 E-value=0.0012 Score=56.82 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=48.6
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------C---------CCceEEe----ccceEEEccCcc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------P---------EDRMSVL----PSRSLQLSDVRL 160 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------~---------~~~~~~~----~~~~L~I~~v~~ 160 (977)
.+.|....+.+|++++|.|... .....+.|||... .+ . ..++... ....|.|.+++.
T Consensus 3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (114)
T d1ogae1 3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK 81 (114)
T ss_dssp ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence 4557778899999999999985 3345799998521 10 0 0111111 124699999999
Q ss_pred CCCeEEEEEEEeC
Q psy574 161 EDAGEYVCEAENA 173 (977)
Q Consensus 161 ~D~G~Y~C~a~n~ 173 (977)
+|+|.|.|.+...
T Consensus 82 ~DSa~YyCa~~~~ 94 (114)
T d1ogae1 82 NPTAFYLCASSSR 94 (114)
T ss_dssp CCCEEEEEEEESS
T ss_pred CCceeEEEeeccC
Confidence 9999999976643
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.00 E-value=0.00074 Score=56.87 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=51.7
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEe--CCEE------ee---------cCCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKK--NGHP------ID---------FENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k--~g~~------l~---------~~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|+++.|.|.+ +|. ....+.|+| -|+- |. ..-.+|+++..+. .|.
T Consensus 4 L~esG~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq 82 (117)
T d1jnhb1 4 LQQSGAELARPGASVKLSCRT-SGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQ 82 (117)
T ss_dssp EEECCCEECCTTCCEEEEEEE-ESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEE
T ss_pred EeeECCceECCCCCEEEEEEE-cCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeec
Confidence 457777889999999999999 554 334678887 2211 11 1224688887542 499
Q ss_pred EcCCCCCCCeEEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~ 81 (977)
|++++.+|++.|.|...
T Consensus 83 ~~~L~~eDTAvYYCAr~ 99 (117)
T d1jnhb1 83 LNSLTSEDSAVYSCSRG 99 (117)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ccccCCCcceEEEEeec
Confidence 99999999999999653
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
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class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.00 E-value=0.00046 Score=58.45 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=51.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE------eec---------CCCceEEEecCc-----EEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP------IDF---------ENSKRLRLVDGT-----NLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~------l~~---------~~~~r~~~~~~g-----~L~ 64 (977)
.+++....+.+|++++|.|.+ .|.. ...+.|+|. |+- |.. .-.+|+++..+. .|.
T Consensus 4 L~esG~~~~kPg~sl~LsC~~-SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~ 82 (119)
T d1eapb1 4 LQESGTELVKPGASVKISCKA-SGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQ 82 (119)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred EEeECCceECCCCCEEEEEEE-ccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEee
Confidence 467788889999999999998 5543 345788872 221 211 114577776532 499
Q ss_pred EcCCCCCCCeEEEEEE
Q psy574 65 IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a 80 (977)
|++++.+|++.|.|..
T Consensus 83 ~~sL~~eDTAvYYCAr 98 (119)
T d1eapb1 83 LNSLTSEDSAVYFCKR 98 (119)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred eecccCCcceEEEEEE
Confidence 9999999999999964
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00027 Score=61.00 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=44.8
Q ss_pred eEEeCCCeEEEEEEecc--cCceEEEEEECCe--e---C-------------CCCceEEecc-----ceEEEccCccCCC
Q psy574 109 TTVSASSIIVFECSVGG--DAVLTVHWKRLGS--A---M-------------PEDRMSVLPS-----RSLQLSDVRLEDA 163 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~--~---l-------------~~~~~~~~~~-----~~L~I~~v~~~D~ 163 (977)
..+.+|++++|.|...+ .....+.|+|... . + ..+|+.+..+ -+|+|.+++.+|+
T Consensus 9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds 88 (113)
T d1smoa_ 9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS 88 (113)
T ss_dssp EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence 46678999999998753 2345788998521 1 1 0124444321 3599999999999
Q ss_pred eEEEEEEEeC
Q psy574 164 GEYVCEAENA 173 (977)
Q Consensus 164 G~Y~C~a~n~ 173 (977)
|.|.|.+...
T Consensus 89 g~Y~Cav~~~ 98 (113)
T d1smoa_ 89 GLYQCVIYQP 98 (113)
T ss_dssp EEEEEEECCT
T ss_pred ceEEEEEECC
Confidence 9999987643
|