Psyllid ID: psy5750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Secondary Structure (PSIPRED)
ccccccEEEEEccccEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccEEEccccccccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccccccccEEEEccccEEEEccccccccccccccccccccccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEccccccccccccccEEcccccEEEEccccccccccEccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccEccccHHccccccccccccEEEcccccEEEEccccccccccEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccEEcccHHccccccccccccEEEcccccEEEEccccccccccEEcccHHHccccccccccccEEcccccEEEEcccccc
Coil and Loop (DISEMBL)
GVFNYSAELIFstgqrlhvqeeffghdvydqlkmqgsiqgtapsiavgvspvledlqqefthsstvnddpcknffcvanssciveddkptcicnrgfqqlysedrlqddfgcfdinecnagtdlchknamcfneigsyscqcrpgftgnghqcteitvpqtgptspcesdpracnpphstctnltdyrtcncdpgyqkdylddrrvafvctdvdecmnyppicnnnadcinrpgtyqcqckrgfsgdgfnceegKYCLVVGITLCKMYLEVVNIQEIcgensisgl
Flexible Loop (DISEMBL)
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHsstvnddpckNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Low Complexity Region (SEG)
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Disordered region (IsUnstruct)
**FNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITV*********************TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICG*******
Disordered Region (DISOPRED)
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Disordered Region (DISEMBL)
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVP**************CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Disordered Region (DISPRO)
*VFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEICGENSISGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q14246	886	EGF-like module-containin	yes	N/A	0.545	0.176	0.354	8e-18
A1A5Y0	811	Protein kinase C-binding	no	N/A	0.580	0.204	0.289	7e-17
P35555	2871	Fibrillin-1 OS=Homo sapie	no	N/A	0.479	0.047	0.371	1e-16
P98133	2871	Fibrillin-1 OS=Bos taurus	no	N/A	0.479	0.047	0.365	2e-16
Q14112	1375	Nidogen-2 OS=Homo sapiens	no	N/A	0.493	0.102	0.373	2e-16
Q61554	2871	Fibrillin-1 OS=Mus muscul	yes	N/A	0.479	0.047	0.365	3e-16
Q7ZXL5	814	Protein kinase C-binding	N/A	N/A	0.597	0.210	0.305	6e-16
Q9TV36	2871	Fibrillin-1 OS=Sus scrofa	no	N/A	0.489	0.048	0.357	2e-15
B5DFC9	1396	Nidogen-2 OS=Rattus norve	yes	N/A	0.493	0.101	0.349	3e-15
Q61549	931	EGF-like module-containin	no	N/A	0.566	0.174	0.331	3e-15

>sp|Q14246|EMR1_HUMAN EGF-like module-containing mucin-like hormone receptor-like 1 OS=Homo sapiens GN=EMR1 PE=2 SV=3

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 87/175 (49%), Gaps = 19/175 (10%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQD---DFGCFDINECNAGTDLCHKNAMCF 132
           C  NSSC     +  C C  GF      D +     +F C DINEC   + +C +++ C 
Sbjct: 91  CGPNSSCKNLSGRYKCSCLDGFSSPTGNDWVPGKPGNFSCTDINEC-LTSSVCPEHSDCV 149

Query: 133 NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNC 192
           N +GSYSC C+ GF      C ++          C +DPRAC P H+TC N     +C C
Sbjct: 150 NSMGSYSCSCQVGFISRNSTCEDV--------DEC-ADPRAC-PEHATCNNTVGNYSCFC 199

Query: 193 DPGYQKD--YLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFS 245
           +PG++    +L  + +   C D+DEC    PI   N+ C N PG+Y C C  GF+
Sbjct: 200 NPGFESSSGHLSFQGLKASCEDIDECTEMCPI---NSTCTNTPGSYFCTCHPGFA 251

Could be involved in cell-cell interactions.
Homo sapiens (taxid: 9606)

>sp|A1A5Y0|NELL2_DANRE Protein kinase C-binding protein NELL2 OS=Danio rerio GN=nell2 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 31/197 (15%)

Query: 75  FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE 134
           +C  N+ C+       C+C+ GF ++       DD+ C + +EC +G   C +NA+CFN 
Sbjct: 448 YCRENTECVNTAGSFMCVCHTGFIRI-------DDYSCTEHDECASGQHDCDENALCFNT 500

Query: 135 IGSYSCQCRPGFTGNGHQCTEI-----------------TVPQTGPTSPCESDPRACN-- 175
           +G +SC C+PG++GNG  C  +                    Q      CE+D   C+  
Sbjct: 501 VGGHSCSCKPGYSGNGTVCRALCDGRCLNGGSCASPNVCVCVQGFSGQNCETDIDECSEG 560

Query: 176 ----PPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
                 H+TC NL  +  C C  GY  + +        C D+DEC      C N+  C N
Sbjct: 561 LVQCAAHATCVNLPGWYHCECRDGYHDNEVFSAN-GESCRDIDECRTGRSTCANDTVCFN 619

Query: 232 RPGTYQCQCKRGFSGDG 248
             G + C+C  G +  G
Sbjct: 620 LDGGFDCRCPHGHNCSG 636

Danio rerio (taxid: 7955)

>sp|P35555|FBN1_HUMAN Fibrillin-1 OS=Homo sapiens GN=FBN1 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 111  GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESD 170
            GC DINEC  G   C K+A+C N  GS+ C C PG+ G+G +CT++          C + 
Sbjct: 1319 GCTDINECEIGAHNCGKHAVCTNTAGSFKCSCSPGWIGDGIKCTDL--------DECSNG 1370

Query: 171  PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCI 230
               C+  H+ C N      C C  GY  D        F CTD+DEC     +C N   C+
Sbjct: 1371 THMCSQ-HADCKNTMGSYRCLCKEGYTGD-------GFTCTDLDECSENLNLCGN-GQCL 1421

Query: 231  NRPGTYQCQCKRGF--SGDGFNCEEGKYCLVVGITL 264
            N PG Y+C+C  GF  S DG  CE+   C +  I +
Sbjct: 1422 NAPGGYRCECDMGFVPSADGKACEDIDECSLPNICV 1457

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Homo sapiens (taxid: 9606)

>sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 111  GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESD 170
            GC DINEC  G   C ++A+C N  GS+ C C PG+ G+G +CT++          C + 
Sbjct: 1319 GCTDINECEIGAHNCDRHAVCTNTAGSFKCSCSPGWIGDGIKCTDL--------DECSNG 1370

Query: 171  PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCI 230
               C+  H+ C N      C C  GY  D        F CTD+DEC     +C N   C+
Sbjct: 1371 THMCSQ-HADCKNTMGSYRCLCKEGYTGD-------GFTCTDLDECSENLNLCGN-GQCL 1421

Query: 231  NRPGTYQCQCKRGF--SGDGFNCEEGKYCLVVGITL 264
            N PG Y+C+C  GF  S DG  CE+   C +  I +
Sbjct: 1422 NAPGGYRCECDMGFVPSADGKACEDIDECSLPNICV 1457

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Bos taurus (taxid: 9913)

>sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens GN=NID2 PE=1 SV=3

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FT 147
           TC C  G+Q         D   C D NEC  G   C  N++C N  GSY C+CR G  F 
Sbjct: 785 TCECASGYQG--------DGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFA 836

Query: 148 GNGHQCTEITVPQTGPTSPCESDPRACNPP-HSTCTNLTDYR-TCNCDPGYQKDYLDDRR 205
            + H C  IT     P +PCE     C P   + C +      +C C PGY  D      
Sbjct: 837 DDRHTCILITP----PANPCEDGSHTCAPAGQARCVHHGGSTFSCACLPGYAGD------ 886

Query: 206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
               CTDVDEC      C+  A C N PG++ C+C+ G+ GDGF C
Sbjct: 887 -GHQCTDVDECSEN--RCHPAATCYNTPGSFSCRCQPGYYGDGFQC 929

Cell adhesion glycoprotein which is widely distributed in basement membranes. Binds to collagens I and IV, to perlecan and to laminin 1. Does not bind fibulins. It probably has a role in cell-extracellular matrix interactions.

Homo sapiens (taxid: 9606)

>sp|Q61554|FBN1_MOUSE Fibrillin-1 OS=Mus musculus GN=Fbn1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 111  GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESD 170
            GC DINEC  G   C ++A+C N  GS+ C C PG+ G+G +CT++          C + 
Sbjct: 1319 GCTDINECEIGAHNCGRHAVCTNTAGSFKCSCSPGWIGDGIKCTDL--------DECSNG 1370

Query: 171  PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCI 230
               C+  H+ C N      C C  GY  D        F CTD+DEC     +C N   C+
Sbjct: 1371 THMCSQ-HADCKNTMGSYRCLCKDGYTGD-------GFTCTDLDECSENLNLCGN-GQCL 1421

Query: 231  NRPGTYQCQCKRGF--SGDGFNCEEGKYCLVVGITL 264
            N PG Y+C+C  GF  S DG  CE+   C +  I +
Sbjct: 1422 NAPGGYRCECDMGFVPSADGKACEDIDECSLPNICV 1457

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Mus musculus (taxid: 10090)

>sp|Q7ZXL5|NELL2_XENLA Protein kinase C-binding protein NELL2 OS=Xenopus laevis GN=nell2 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 89/206 (43%), Gaps = 35/206 (16%)

Query: 75  FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE 134
           +C  N+ C+       C+C  G+ ++       DD+ C + NEC      C +NAMCFN 
Sbjct: 448 YCRENTVCVNTPGSFMCVCQTGYLKI-------DDYSCTEHNECATNQHSCDENAMCFNT 500

Query: 135 IGSYSCQCRPGFTGNGHQCTEI-----------------TVPQ--TGPTSPCESDPRACN 175
           +G ++C C+PG+TGNG  C                      PQ  TGP+  CESD   C 
Sbjct: 501 VGGHNCVCQPGYTGNGTDCRAFCKDGCRNGGTCIAPNICACPQGFTGPS--CESDIDECT 558

Query: 176 P------PHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC 229
                    + C NL  +  C C  GY  + +        C D+DEC      C+N+  C
Sbjct: 559 EGFVQCDSRANCINLPGWYHCECRDGYHDNGMFSLG-GESCEDIDECATGRHSCSNDTVC 617

Query: 230 INRPGTYQCQCKRGFSGDGFNCEEGK 255
            N  G + C+C  G +  G    EGK
Sbjct: 618 FNLDGGFDCRCPHGKNCSGDCTHEGK 643

Xenopus laevis (taxid: 8355)

>sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 25/165 (15%)

Query: 91   CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
            C+C  GF  + SED       C D+NEC+   ++C  +  C N  GS+ C C  G++G  
Sbjct: 1263 CLCYDGF--MASEDMKT----CVDVNECDLNPNIC-LSGTCENTKGSFICHCDMGYSGKK 1315

Query: 151  HQ--CTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAF 208
             +  CT+I        + CE     C+  H+ CTN      C+C PG+  D         
Sbjct: 1316 GKTGCTDI--------NECEIGAHNCDR-HAVCTNTAGSFNCSCSPGWIGD-------GI 1359

Query: 209  VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
             CTD+DEC N   +C+ +ADC N  G+Y+C CK G++GDGF C +
Sbjct: 1360 KCTDLDECSNGTHMCSQHADCKNTMGSYRCLCKEGYTGDGFTCAD 1404

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Sus scrofa (taxid: 9823)

>sp|B5DFC9|NID2_RAT Nidogen-2 OS=Rattus norvegicus GN=Nid2 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FT 147
           TC C  GFQ         D   C D+NEC  G   C  N++C N +GSY C+CR G  F 
Sbjct: 801 TCECTPGFQG--------DGRSCVDVNECATGFHRCGPNSVCVNLVGSYRCECRSGYEFA 852

Query: 148 GNGHQCTEITVPQTGPTSPCESDPRACNPP-HSTCTNLTDYR-TCNCDPGYQKDYLDDRR 205
            + H C  I      P +PC      C P   + C +      +C C PG+         
Sbjct: 853 DDRHTCVLIAP----PPNPCLDGSHTCAPEGQARCIHHGGSSFSCACLPGFVG------- 901

Query: 206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
               C+DVDEC      C+  A C N PG++ C+C+ G+ GDGF+C
Sbjct: 902 TGHQCSDVDECAEN--RCHGAAICYNTPGSFSCRCQPGYHGDGFHC 945

Cell adhesion glycoprotein. Might be involved in osteoblast differentiation. It probably has a role in cell-extracellular matrix interactions.

Rattus norvegicus (taxid: 10116)

>sp|Q61549|EMR1_MOUSE EGF-like module-containing mucin-like hormone receptor-like 1 OS=Mus musculus GN=Emr1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 82/193 (42%), Gaps = 31/193 (16%)

Query: 67  NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQ---DDFGCFDINECNAGTD 123
           +D PC       NS C     +  C C RGF     +D +    D+F C D++EC     
Sbjct: 88  SDSPCG-----PNSVCTNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDEC-LTIG 141

Query: 124 LCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
           +C K + C N +GSYSC C+PGF  NG  C +            E   R   P H+TC N
Sbjct: 142 ICPKYSNCSNSVGSYSCTCQPGFVLNGSICED----------EDECVTRDVCPEHATCHN 191

Query: 184 LTDYRTCNCDPGYQKD-------YLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTY 236
                 C C+ G +          LD+      C DVDEC     +C     CIN  G+Y
Sbjct: 192 TLGSYYCTCNSGLESSGGGPMFQGLDES-----CEDVDECSRNSTLCGPTFICINTLGSY 246

Query: 237 QCQCKRGFSGDGF 249
            C C  GFS   F
Sbjct: 247 SCSCPAGFSLPTF 259

Could be involved in cell-cell interactions.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
313213721	738	unnamed protein product [Oikopleura dioi	0.559	0.216	0.375	2e-22
301605595	2509	PREDICTED: fibrillin-2-like [Xenopus (Si	0.548	0.062	0.375	2e-21
341901723	298	hypothetical protein CAEBREN_31585 [Caen	0.489	0.469	0.377	3e-21
390335314	1785	PREDICTED: uncharacterized protein LOC58	0.573	0.091	0.377	4e-21
198430297	2830	PREDICTED: similar to Fibrillin-2 [Ciona	0.566	0.057	0.361	4e-21
449278484	718	Nidogen-2, partial [Columba livia]	0.520	0.207	0.379	5e-21
260823668	310	hypothetical protein BRAFLDRAFT_147130 [	0.569	0.525	0.394	5e-21
198435677	2125	PREDICTED: similar to predicted protein	0.643	0.086	0.348	1e-20
321473827	1373	hypothetical protein DAPPUDRAFT_314322 [	0.678	0.141	0.339	1e-20
260794094	1172	hypothetical protein BRAFLDRAFT_79634 [B	0.636	0.155	0.342	2e-20

>gi|313213721|emb|CBY40610.1| unnamed protein product [Oikopleura dioica]

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 24/184 (13%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C AN+ CI  +D  +C+C+ GF     +        CFDINECN G ++C  NA+C N +
Sbjct: 326 CSANADCIDLEDGFSCVCHAGFGGSGQK--------CFDINECNNGENVCSPNAICNNVV 377

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
           GS+ C C+PGF GNG  C EI          C +D   C+P  S  T    ++ C C+ G
Sbjct: 378 GSFECSCKPGFMGNGVVCNEI--------DECANDLDNCSPNASCMTPRGSFQ-CTCNDG 428

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK 255
           +  D +       +C D +EC      C++NA C+N  G ++C CK GF GDGF C++  
Sbjct: 429 FNGDGV-------ICFDKNECALGKDNCDSNAHCLNTGGGFECLCKNGFKGDGFTCQDIN 481

Query: 256 YCLV 259
            C+V
Sbjct: 482 ECVV 485

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301605595|ref|XP_002932430.1| PREDICTED: fibrillin-2-like [Xenopus (Silurana) tropicalis]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 90/181 (49%), Gaps = 24/181 (13%)

Query: 82  CIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQ 141
           C+       CIC  GF          +D  C DI+EC  G   CH  A CFN +GSY C+
Sbjct: 727 CVNTPGSYRCICKNGF--------FLNDTHCSDIDECATGAQDCHPLAECFNTVGSYECR 778

Query: 142 CRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYL 201
           C+ GF GNG  CT+I          C+     C+   +TCTN      C+C  G+  D +
Sbjct: 779 CQTGFHGNGRNCTDI--------DECQKHNGGCHG-SATCTNTPGRFYCSCFKGFTGDGV 829

Query: 202 DDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVG 261
           +       C D++EC +   IC N +DCIN  G+Y C CK GF GDGFNC++   C   G
Sbjct: 830 E-------CWDINECQDNNTICGNFSDCINTQGSYSCTCKEGFRGDGFNCKDVDECSASG 882

Query: 262 I 262
           +
Sbjct: 883 V 883

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|341901723|gb|EGT57658.1| hypothetical protein CAEBREN_31585 [Caenorhabditis brenneri]

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 27/167 (16%)

Query: 90  TCICNRGFQQLYSEDRLQDDFG-CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           TC C  G+++        + +G C DI+EC     +C KNA C NEIGSY C+C   + G
Sbjct: 69  TCECRSGYEK--------NQYGECIDIDECRGYKAVCDKNAWCVNEIGSYRCECMASYRG 120

Query: 149 NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAF 208
           +G  CT + + ++        D + C+  HSTC N      C C  GY+ D        F
Sbjct: 121 DGKHCTYVGLGRSSI------DCKDCSI-HSTCNN----GVCQCKEGYEGD-------GF 162

Query: 209 VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK 255
            CTDV+EC+  P +C+ NA+CINR G++ C C  G++G+G+NC   K
Sbjct: 163 NCTDVNECLRRPEMCDKNAECINREGSFICTCLAGYAGNGYNCTVSK 209

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|390335314|ref|XP_788037.3| PREDICTED: uncharacterized protein LOC583016 [Strongylocentrotus purpuratus]

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 90/183 (49%), Gaps = 19/183 (10%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C  N+ CI       C C  GF          D   C DINEC +G + C +NA C N +
Sbjct: 667 CDENAECINTAGSFVCQCQTGFSG--------DGTTCRDINECTSGGNNCDENADCINTV 718

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
           GS+ CQC  GF+G+G  C    + +T    PC        P  + C N  D  TC C  G
Sbjct: 719 GSFVCQCLTGFSGDGTTCGAFDICET--LGPC--------PSVAECINEIDSYTCQCRTG 768

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK 255
           Y+     D   + VC+DVDEC +    C+ NA CIN  G+Y+C C  G++GDG +CE   
Sbjct: 769 YETVSASDAG-SVVCSDVDECSSSTTACDLNAVCINTIGSYECVCGDGYAGDGMSCEAVD 827

Query: 256 YCL 258
            CL
Sbjct: 828 PCL 830

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|198430297|ref|XP_002124637.1| PREDICTED: similar to Fibrillin-2 [Ciona intestinalis]

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 91/191 (47%), Gaps = 29/191 (15%)

Query: 76   CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
            C AN++C+      TC CN GF          D   C DINEC  GT  CH NA C N  
Sbjct: 2167 CTANATCVDNPGSFTCACNTGFTG--------DGVTCTDINECTLGTHNCHTNATCTNTN 2218

Query: 136  GSYSCQCRPGFTGNGHQCTEITVPQTGPTS-------------PCESDPRACNPPHSTCT 182
            GS++C C  GFTG+G  CT+I    TG  S              C ++ ++C+   + C 
Sbjct: 2219 GSFTCSCNSGFTGDGVSCTDIDECTTGTHSCHANATCISTDIDECTTNAQSCH-ASANCA 2277

Query: 183  NLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKR 242
            N     TC C+ G+  D          CTD+DEC      C+ NA+C N  G++ C C  
Sbjct: 2278 NTDGSFTCACNTGFTGD-------GVTCTDIDECALGTHNCHTNANCTNTNGSFTCSCNS 2330

Query: 243  GFSGDGFNCEE 253
            GF+GDG  C +
Sbjct: 2331 GFTGDGVTCTD 2341

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449278484|gb|EMC86306.1| Nidogen-2, partial [Columba livia]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 85/174 (48%), Gaps = 25/174 (14%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF--T 147
           TC C  G+++        D +GC D++EC  G   C   A+C N  GSY C+CR G+   
Sbjct: 140 TCECVAGYRR--------DGWGCRDVDECAEGLSQCGPFAICLNAPGSYRCECRSGYQPA 191

Query: 148 GNGHQCTEITVPQTGPTSPCESDPRACNPPHST--CTNLTDYRTCNCDPGYQKDYLDDRR 205
           G+G  C    VP    T PCE     C PP      ++   + TC C PGY  D      
Sbjct: 192 GDGQMC----VPLVPATDPCEDGSHPCAPPDRARCLSHAGGHPTCECLPGYAGD------ 241

Query: 206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLV 259
               C+DVDEC   P  C+  A C N PG++ CQC  G+ GDGF C  G  CL+
Sbjct: 242 -GIYCSDVDECAENP--CHPAATCYNTPGSFSCQCPPGYEGDGFQCVHGWGCLL 292

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823668|ref|XP_002606202.1| hypothetical protein BRAFLDRAFT_147130 [Branchiostoma floridae] gi|229291542|gb|EEN62212.1| hypothetical protein BRAFLDRAFT_147130 [Branchiostoma floridae]

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 96/190 (50%), Gaps = 27/190 (14%)

Query: 69  DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
           D C  + C  N++C   D   TC C  G++         + F C DINEC   T  CH N
Sbjct: 3   DECDVYPCDENATCTNTDGSFTCECVSGYEG--------NGFNCTDINECLNKT-TCHDN 53

Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR 188
           A C N IGS++C C  G+ G+G  CT+I           E D   C+  ++TCTN     
Sbjct: 54  ATCTNTIGSFTCDCVVGYDGDGINCTDID----------ECDLYPCDD-NATCTNTDGSF 102

Query: 189 TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDG 248
           TC C  GY+ D        F CTD+DEC N   +C+ NA C N  G+Y C C+ GF GDG
Sbjct: 103 TCECVSGYEGD-------GFNCTDIDECQNVTDLCHANATCTNTDGSYACMCEYGFDGDG 155

Query: 249 FNCEEGKYCL 258
           FNC +   CL
Sbjct: 156 FNCTDINECL 165

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198435677|ref|XP_002124086.1| PREDICTED: similar to predicted protein [Ciona intestinalis]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/215 (34%), Positives = 102/215 (47%), Gaps = 31/215 (14%)

Query: 60   FTHSSTVNDDPCKN--FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINE 117
            FT  +  + D CKN    C  N  C+  D    CIC  G+              C D+NE
Sbjct: 1253 FTGKNCTDIDECKNASVICEQNEMCVNNDGSYMCICKPGYATS----------NCTDVNE 1302

Query: 118  CNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPP 177
            CN G   CH NA C N +G+Y+C C  GF G+G+ C +         + C +D  AC   
Sbjct: 1303 CNNGEAKCHSNATCNNTMGNYTCTCYTGFIGDGYNCID--------RNECSAD-NAC-SA 1352

Query: 178  HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQ 237
            ++TCTN     TC C  G+  D          CTD++EC + P  C+ NA C N  G+Y 
Sbjct: 1353 NATCTNHGGGYTCTCKSGFSGD-------GHTCTDINECSSNP--CHENAYCNNTDGSYT 1403

Query: 238  CQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVV 272
            C CK+ +SGDG +C+   +C   G+  C  Y   V
Sbjct: 1404 CTCKKDYSGDGKSCQLLLHCSTNGVFECHKYASCV 1438

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321473827|gb|EFX84793.1| hypothetical protein DAPPUDRAFT_314322 [Daphnia pulex]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 30/224 (13%)

Query: 41  TAPSIAVGVSPVLEDLQQ---EFTHSSTVN-----DDPC--KNFFCVANSSCIVEDDKPT 90
           T   + VG + V  D ++    F  ++ ++     +DPC      CV NS CI + D   
Sbjct: 507 TVLKLKVGRNFVTYDARELIVRFAMTTKISPLQETEDPCVKGQASCVPNSICIADKDTFR 566

Query: 91  CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
           C+CN+G++  Y E +  D+  C DINECN GTD C +NA+CF++ G Y C+C+ G+ G+G
Sbjct: 567 CVCNKGYEYYYQEGK--DESACVDINECNIGTDRCDENALCFDQPGGYECRCKAGYNGDG 624

Query: 151 HQCTEITVPQTGPTSPCESDPRACNPPHSTCT-NLTDYRTCNCDPGYQKDYLDDRRVAFV 209
             C + T        PC    R   P HS C  N   +  C C  GYQ+    + +   +
Sbjct: 625 FNCQKET--------PCS---RVRCPVHSQCIENNQGHPECRCLAGYQE---TESQCQLI 670

Query: 210 CTDVDECMNYPPICNNNADCINRPGT--YQCQCKRGFSGDGFNC 251
            +   +C      C+ NA C+    T  +QCQC  GF GDG  C
Sbjct: 671 RSPTADCRTQDK-CDMNAQCVYNSQTDQHQCQCVSGFRGDGLTC 713

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260794094|ref|XP_002592045.1| hypothetical protein BRAFLDRAFT_79634 [Branchiostoma floridae] gi|229277258|gb|EEN48056.1| hypothetical protein BRAFLDRAFT_79634 [Branchiostoma floridae]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C A S+CI      TC C  G++ +        D  C D++EC AGT  CH+NA C N++
Sbjct: 504 CQAPSTCINAPGTYTCACTAGYEYV--------DSTCKDVDECAAGTHNCHQNADCGNQV 555

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
           G++SC CR G+ G+G  C +    Q  P SPC +D         TCTN     TC C  G
Sbjct: 556 GTFSCTCRTGYVGDGRTCADEDECQRTP-SPCSAD--------RTCTNTDGSFTCTCRSG 606

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC--EE 253
           Y+ D          CTD+DEC   P  C+  A C N  G+Y C C   + G+G +C  + 
Sbjct: 607 YRTD-------GNACTDIDECSGNPTPCHQQATCQNTQGSYTCSCNSPYEGNGTHCTNDP 659

Query: 254 GKYCLVV--GITLCKMYLEVVNIQEICGEN 281
              C++   G+T+C      +    IC ++
Sbjct: 660 NTNCVIASNGVTICTCNSGFIGNGYICSDD 689

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
ZFIN|ZDB-GENE-050302-58	1269	nid1a "nidogen 1a" [Danio reri	0.555	0.125	0.354	6.6e-28
UNIPROTKB|F1MWN3	1236	F1MWN3 "Uncharacterized protei	0.611	0.141	0.323	1.6e-25
UNIPROTKB|F1P7Y6	759	NID2 "Uncharacterized protein"	0.597	0.225	0.353	1.7e-25
UNIPROTKB|F1MF97	1303	NID2 "Uncharacterized protein"	0.493	0.108	0.391	2.3e-25
UNIPROTKB|P14543	1247	NID1 "Nidogen-1" [Homo sapiens	0.562	0.129	0.331	5.6e-25
MGI|MGI:97342	1245	Nid1 "nidogen 1" [Mus musculus	0.594	0.136	0.328	1.5e-24
UNIPROTKB|Q14112	1375	NID2 "Nidogen-2" [Homo sapiens	0.493	0.102	0.379	1.9e-24
UNIPROTKB|E1BNX3	1148	Bt.112199 "Uncharacterized pro	0.664	0.165	0.322	3.1e-24
RGD|1311685	1396	Nid2 "nidogen 2 (osteonidogen)	0.493	0.101	0.355	4.1e-24
UNIPROTKB|Q14246	886	EMR1 "EGF-like module-containi	0.650	0.209	0.337	8.9e-24

ZFIN|ZDB-GENE-050302-58 nid1a "nidogen 1a" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 68/192 (35%), Positives = 93/192 (48%)

Query:    76 CVANSSCIV-EDDKPTCICNRGFQQLYSEDRLQDDFGCF-DINECNAGTDLCHKNAMCFN 133
             C  N+ C   + ++ TC C  GF          D   C+ DI+EC     +C +N++C N
Sbjct:   662 CDTNAVCKPGQGNQFTCECAAGFTG--------DGRACYADIDECRETPQICGQNSICNN 713

Query:   134 EIGSYSCQCRPGF--TGNGHQCTEITVPQTGPTSPCESDPRACN-PPHSTC--TNLTDYR 188
             + G++ C+C  GF    +G  C E+      P  PC S    C+ P  + C  T  + Y 
Sbjct:   714 QPGTFRCECLDGFQFASDGQTCVEVH----RPVDPCRSGTHDCDVPERARCSYTGGSSY- 768

Query:   189 TCNCDPGYQKDYLDDRRVAFVCTDVDEC-MNYPPICNNNADCINRPGTYQCQCKRGFSGD 247
              C C PG+  D    RR    C D+DEC +N    C+ NA C N PG++ CQC  GF GD
Sbjct:   769 ICTCAPGFMGD---GRR----CQDIDECQVNQ---CHENAVCFNTPGSFSCQCNPGFHGD 818

Query:   248 GFNCEEG--KYC 257
             GF C  G  K C
Sbjct:   819 GFYCSTGSEKSC 830

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MWN3 F1MWN3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 256 (95.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 66/204 (32%), Positives = 101/204 (49%)

Query:    69 DPCK--NFFCVANSSCIVEDDKP-TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
             +PC   +  C +N++C        TC C+ GF+         D   C+DI+EC+    +C
Sbjct:   662 NPCYIGSHGCDSNAACRPGPGTQFTCECSIGFRG--------DGRTCYDIDECSEQPSVC 713

Query:   126 HKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACN-PPHSTCTNL 184
               +A+C N  G++ C+C  G+  +    T +      P + CE+    C+ P  + C  +
Sbjct:   714 GNHAICNNHPGTFRCECVEGYQFS-EAGTCVAAVGLRPVNHCETGLHDCDIPQRARCIYM 772

Query:   185 --TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKR 242
               + Y TC+C PG+  D    R     C DVDEC   P  C+ +A C N PG++ C+CK 
Sbjct:   773 GGSSY-TCSCLPGFSGD---GR----ACQDVDECQ--PSRCHPDAFCYNTPGSFTCRCKS 822

Query:   243 GFSGDGFNCEEGKYCLVVGITLCK 266
             G+ GDGF+C  G    VV  T C+
Sbjct:   823 GYQGDGFHCVPG----VVEKTRCQ 842

GO:0071944 "cell periphery" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0032836 "glomerular basement membrane development" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P7Y6 NID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 71/201 (35%), Positives = 93/201 (46%)

Query:    58 QEFTHSSTVNDDPCKN--FFCVANSSCIVEDDKP-TCICNRGFQQLYSEDRLQDDFGCFD 114
             +E +  + VN  PC +    C   + C    D   TC C  G+Q         D   C D
Sbjct:   137 EENSEPTPVN--PCYDGSHTCDITARCHPGTDVDYTCECASGYQG--------DGRSCVD 186

Query:   115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGF--TGNGHQCTEITVPQTGPTSPCESDPR 172
             +NEC  G+  C  N+MC N  GSY C+CR G+    + H C  I  P   P++PCE D  
Sbjct:   187 VNECATGSHHCGPNSMCVNLPGSYRCECRSGYELADDRHTCVLIA-P---PSNPCEDDSH 242

Query:   173 ACNPP-HSTCT-NLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCI 230
              C P   + C  +     +C C PGY             CTDVDEC      C+ +A C 
Sbjct:   243 TCAPAGQARCIYHGGSTFSCACLPGYTGS-------GHQCTDVDECSENR--CHPSATCY 293

Query:   231 NRPGTYQCQCKRGFSGDGFNC 251
             N PG++ CQC  G+ GDGF C
Sbjct:   294 NTPGSFSCQCHPGYHGDGFQC 314

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1MF97 NID2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 65/166 (39%), Positives = 83/166 (50%)

Query:    90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FT 147
             TC C  G+Q         D   C D+NEC  G   C  N++C N +GSY C+CR G  F 
Sbjct:   792 TCECASGYQG--------DGRNCVDVNECATGFHRCGPNSVCVNLLGSYRCECRSGYEFA 843

Query:   148 GNGHQCTEITVPQTGPTSPCESDPRACNPP-HSTCTNLTDYR-TCNCDPGYQKDYLDDRR 205
              + H C  IT P   P +PCE     C P   + C +  D   +C C PGY  D     R
Sbjct:   844 DDRHTCILIT-P---PPNPCEDGHHNCAPASQARCIHHGDGSFSCACLPGYAGD---GHR 896

Query:   206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
                 CTDVDEC      C+ +A C N PG++ C+C+ G+ GDGF C
Sbjct:   897 ----CTDVDECSENR--CHPSATCSNTPGSFSCRCQPGYYGDGFQC 936

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P14543 NID1 "Nidogen-1" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 61/184 (33%), Positives = 91/184 (49%)

Query:    76 CVANSSCIVEDDKP-TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE 134
             C  N++C        TC C+ GF+         D   C+DI+EC+    +C  + +C N 
Sbjct:   679 CDTNAACRPGPRTQFTCECSIGFRG--------DGRTCYDIDECSEQPSVCGSHTICNNH 730

Query:   135 IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACN-PPHSTC--TNLTDYRTCN 191
              G++ C+C  G+  +  + T + V    P + CE+    C+ P  + C  T  + Y TC+
Sbjct:   731 PGTFRCECVEGYQFSD-EGTCVAVVDQRPINYCETGLHNCDIPQRAQCIYTGGSSY-TCS 788

Query:   192 CDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
             C PG+  D          C DVDEC   P  C+ +A C N PG++ CQCK G+ GDGF C
Sbjct:   789 CLPGFSGD-------GQACQDVDECQ--PSRCHPDAFCYNTPGSFTCQCKPGYQGDGFRC 839

Query:   252 EEGK 255
               G+
Sbjct:   840 VPGE 843

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA

GO:0032836 "glomerular basement membrane development" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISS;IDA

MGI|MGI:97342 Nid1 "nidogen 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 66/201 (32%), Positives = 98/201 (48%)

Query:    76 CVANSSCIVEDDKP-TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE 134
             C +N++C        TC C+ GF+         D   C+DI+EC+     C  +A+C N 
Sbjct:   677 CDSNAACRPGPGTQFTCECSIGFRG--------DGQTCYDIDECSEQPSRCGNHAVCNNL 728

Query:   135 IGSYSCQCRPG--FTGNGHQCTEITVPQTGPTSPCESDPRACN-PPHSTCTNL--TDYRT 189
              G++ C+C  G  F+  G   T +      P + CE+    C+ P  + C  +  + Y T
Sbjct:   729 PGTFRCECVEGYHFSDRG---TCVAAEDQRPINYCETGLHNCDIPQRAQCIYMGGSSY-T 784

Query:   190 CNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGF 249
             C+C PG+  D    R     C DVDEC +    C+ +A C N PG++ CQCK G+ GDGF
Sbjct:   785 CSCLPGFSGD---GR----ACRDVDECQHSR--CHPDAFCYNTPGSFTCQCKPGYQGDGF 835

Query:   250 NCEEGKYCLVVGITLCKMYLE 270
              C  G+    V  T C++  E
Sbjct:   836 RCMPGE----VSKTRCQLERE 852

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005518 "collagen binding" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005604 "basement membrane" evidence=IDA;TAS;IPI

GO:0005605 "basal lamina" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IDA

GO:0030198 "extracellular matrix organization" evidence=IDA

GO:0032836 "glomerular basement membrane development" evidence=IMP

GO:0043237 "laminin-1 binding" evidence=IDA

GO:0050840 "extracellular matrix binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

UNIPROTKB|Q14112 NID2 "Nidogen-2" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 63/166 (37%), Positives = 78/166 (46%)

Query:    90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FT 147
             TC C  G+Q         D   C D NEC  G   C  N++C N  GSY C+CR G  F 
Sbjct:   785 TCECASGYQG--------DGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFA 836

Query:   148 GNGHQCTEITVPQTGPTSPCESDPRACNPP-HSTCTNLTDYR-TCNCDPGYQKDYLDDRR 205
              + H C  IT P   P +PCE     C P   + C +      +C C PGY  D      
Sbjct:   837 DDRHTCILIT-P---PANPCEDGSHTCAPAGQARCVHHGGSTFSCACLPGYAGD------ 886

Query:   206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
                 CTDVDEC      C+  A C N PG++ C+C+ G+ GDGF C
Sbjct:   887 -GHQCTDVDECSENR--CHPAATCYNTPGSFSCRCQPGYYGDGFQC 929

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005518 "collagen binding" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0031012 "extracellular matrix" evidence=ISS;IDA

UNIPROTKB|E1BNX3 Bt.112199 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 3.1e-24, P = 3.1e-24
 Identities = 71/220 (32%), Positives = 99/220 (45%)

Query:    76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDD---FGCFDINECNAGTDLCHKNAMCF 132
             C  NS C     +  C C  GF      + +      F C DINEC     +C +++ C 
Sbjct:   308 CGPNSRCRNLPGRYECSCLTGFSSPTGNNWISGKPGHFTCTDINEC-LSHGVCPEHSECT 366

Query:   133 NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNC 192
             N +GSY C C+ GFT     C ++          C ++PR+C P HSTC N     +C C
Sbjct:   367 NSLGSYRCSCKVGFTSGNSTCEDV--------DEC-ANPRSC-PEHSTCHNSLGSYSCVC 416

Query:   193 DPGYQK--DYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFS---GD 247
             +PG+Q        +    +C D+DEC   PP C  N+ C N PG Y+C C  GFS   G+
Sbjct:   417 NPGFQSRSGKKSFQGPGEMCQDIDECSQTPPTCGPNSSCRNLPGRYECSCLTGFSSPTGN 476

Query:   248 G--------FNCEEGKYCLVVGITLCKMYLEVVN-IQEIC 278
                      F C +   CL  G+  C  + E  N ++  C
Sbjct:   477 NWIPGKSGHFTCTDINECLSHGV--CPEHSECTNSLRSFC 514

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

RGD|1311685 Nid2 "nidogen 2 (osteonidogen)" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 59/166 (35%), Positives = 78/166 (46%)

Query:    90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FT 147
             TC C  GFQ         D   C D+NEC  G   C  N++C N +GSY C+CR G  F 
Sbjct:   801 TCECTPGFQG--------DGRSCVDVNECATGFHRCGPNSVCVNLVGSYRCECRSGYEFA 852

Query:   148 GNGHQCTEITVPQTGPTSPCESDPRACNPP-HSTCTNLTDYR-TCNCDPGYQKDYLDDRR 205
              + H C  I  P   P +PC      C P   + C +      +C C PG+         
Sbjct:   853 DDRHTCVLIA-P---PPNPCLDGSHTCAPEGQARCIHHGGSSFSCACLPGFVG------- 901

Query:   206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
                 C+DVDEC      C+  A C N PG++ C+C+ G+ GDGF+C
Sbjct:   902 TGHQCSDVDECAENR--CHGAAICYNTPGSFSCRCQPGYHGDGFHC 945

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005578 "proteinaceous extracellular matrix" evidence=ISO

GO:0005604 "basement membrane" evidence=IEA;ISO

GO:0007160 "cell-matrix adhesion" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IDA

GO:0031012 "extracellular matrix" evidence=ISO

UNIPROTKB|Q14246 EMR1 "EGF-like module-containing mucin-like hormone receptor-like 1" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 8.9e-24, P = 8.9e-24
 Identities = 73/216 (33%), Positives = 102/216 (47%)

Query:    76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQD---DFGCFDINECNAGTDLCHKNAMCF 132
             C  NSSC     +  C C  GF      D +     +F C DINEC   + +C +++ C 
Sbjct:    91 CGPNSSCKNLSGRYKCSCLDGFSSPTGNDWVPGKPGNFSCTDINECLTSS-VCPEHSDCV 149

Query:   133 NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNC 192
             N +GSYSC C+ GF      C ++          C +DPRAC P H+TC N     +C C
Sbjct:   150 NSMGSYSCSCQVGFISRNSTCEDV--------DEC-ADPRAC-PEHATCNNTVGNYSCFC 199

Query:   193 DPGYQKD--YLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFS-GDG- 248
             +PG++    +L  + +   C D+DEC    PI   N+ C N PG+Y C C  GF+  +G 
Sbjct:   200 NPGFESSSGHLSFQGLKASCEDIDECTEMCPI---NSTCTNTPGSYFCTCHPGFAPSNGQ 256

Query:   249 FN-CEEGKYCLVVGITLCKMYLEVVNIQEICGENSI 283
              N  ++G  C    I  C+           CG NSI
Sbjct:   257 LNFTDQGVECR--DIDECRQD------PSTCGPNSI 284

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	286
pfam12947	36	pfam12947, EGF_3, EGF domain	1e-07
cd00255	224	cd00255, nidG2, Nidogen, G2 domain; Nidogen is an	3e-07
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	4e-07
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	6e-07
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	1e-06
pfam12947	36	pfam12947, EGF_3, EGF domain	2e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	3e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	3e-06
smart00682	227	smart00682, G2F, G2 nidogen domain and fibulin	3e-06
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	2e-05
pfam07474	193	pfam07474, G2F, G2F domain	1e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.001
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	0.003

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 118 CNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQC 153
           C      CH NA C N  GS++C C+ G+TG+G  C
Sbjct: 1   CAENNGGCHPNATCTNTGGSFTCTCKSGYTGDGVTC 36

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|238158 cd00255, nidG2, Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 1   GVFNYSAELIFST-GQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQE 59
           G F   AE+ F T G++L + +   G D +  L +   I G  P +  G +  +ED  + 
Sbjct: 84  GEFTRQAEVTFYTGGEKLRITQVARGLDSHGHLLLDTVISGRVPQVPAGATVHIEDYTEL 143

Query: 60  FTHSST 65
           + ++  
Sbjct: 144 YHYTGP 149

Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria. Length = 224

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
           D++EC  GT  C  N +C N IGS+ C C  G+  N 
Sbjct: 1   DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNE 37

Length = 42

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D+DEC +  P C N   C+N  G+Y+C+C  G++ DG NCE
Sbjct: 1   DIDECASGNP-CQNGGTCVNTVGSYRCECPPGYT-DGRNCE 39

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
           DI+EC A  + C     C N +GSY C+C PG+T +G  C 
Sbjct: 1   DIDEC-ASGNPCQNGGTCVNTVGSYRCECPPGYT-DGRNCE 39

Length = 39

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 216 CMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
           C      C+ NA C N  G++ C CK G++GDG  C
Sbjct: 1   CAENNGGCHPNATCTNTGGSFTCTCKSGYTGDGVTC 36

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D+DEC +  P C N   C+N  G+Y+C C  G++G   NCE
Sbjct: 1   DIDECASGNP-CQNGGTCVNTVGSYRCSCPPGYTGR--NCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           DI+EC A  + C     C N +GSY C C PG+TG
Sbjct: 1   DIDEC-ASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214774 smart00682, G2F, G2 nidogen domain and fibulin

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 1   GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEF 60
           GVF    E+ F+ G+ L +++ F G D +  LK++  + G  P +A G    + D  +E+
Sbjct: 86  GVFTRETEVTFAGGEILRIKQTFSGLDEHGYLKVKIEVSGRVPQVAAGAEVTIPDYTEEY 145

Query: 61  THSS 64
           T++ 
Sbjct: 146 TYTG 149

Length = 227

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
           DVDEC +    C  N  C+N  G+++C C  G+  + DG NC
Sbjct: 1   DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42

Length = 42

>gnl|CDD|219422 pfam07474, G2F, G2F domain

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 1   GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEF 60
           GVF    E+ F TG+ L +++ F G D    L ++  + G  P I  G    ++D  +++
Sbjct: 86  GVFKRETEVTFHTGEILRIKQIFSGLDSDGYLLIKTVVSGRVPQIPSGAEVTIKDYTEDY 145

Query: 61  THSS 64
            ++ 
Sbjct: 146 HYTG 149

Nidogen, an invariant component of basement membranes, is a multifunctional protein that interacts with most other major basement membrane proteins. The G2 fragment or (G"F domain) contains binding sites for collagen IV and perlecan. The structure is composed of an 11-stranded beta-barrel with a central helix. This domain is structurally related to that of green fluorescent protein pfam01353. A large surface patch on the beta-barrel is conserved in all metazoan nidogens. Length = 193

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 117 ECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGH 151
           EC A ++ C     C N  GSY C C PG+TG+  
Sbjct: 1   EC-AASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34

Length = 36

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 220 PPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
              C+N   C+N PG+Y+C C  G++GD  +CE
Sbjct: 5   SNPCSNGGTCVNTPGSYRCVCPPGYTGD-RSCE 36

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG1214|consensus	1289		99.96
KOG1214|consensus	1289		99.71
KOG1219|consensus	4289		99.52
KOG4289|consensus	2531		99.5
KOG1219|consensus	4289		99.48
smart00682	227	G2F G2 nidogen domain and fibulin.	99.34
PF07474	192	G2F: G2F domain; InterPro: IPR006605 Basement memb	99.29
cd00255	224	nidG2 Nidogen, G2 domain; Nidogen is an important	99.27
KOG1217|consensus	487		99.13
KOG1217|consensus	487		99.08
KOG4289|consensus	2531		98.99
KOG4260|consensus	350		98.9
KOG4260|consensus	350		98.9
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.89
KOG1225|consensus	525		98.83
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	98.81
KOG1225|consensus	525		98.71
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	98.39
KOG1226|consensus	783		98.37
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.36
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.32
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	98.07
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.01
KOG1226|consensus	783		97.81
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.8
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.79
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.75
PF12662	24	cEGF: Complement Clr-like EGF-like	97.65
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.57
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.56
PF12662	24	cEGF: Complement Clr-like EGF-like	97.55
smart00181	35	EGF Epidermal growth factor-like domain.	97.48
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.42
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.86
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	96.81
smart00181	35	EGF Epidermal growth factor-like domain.	96.79
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.57
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.25
KOG0994|consensus	1758		96.06
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.86
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	95.83
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.71
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	94.8
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	94.44
KOG0994|consensus	1758		93.55
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.53
KOG1836|consensus	1705		92.25
PF01683	52	EB: EB module; InterPro: IPR006149 The EB domain h	88.57
smart00051	63	DSL delta serrate ligand.	87.92
KOG1836|consensus	1705		86.88
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	86.58
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	85.15

>KOG1214|consensus

Probab=99.96  E-value=2.1e-29  Score=231.23  Aligned_cols=244  Identities=31%  Similarity=0.698  Sum_probs=200.9

Q ss_pred             CccceEEEEEEC-CCCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec----------------
Q psy5750           1 GVFNYSAELIFS-TGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS----------------   63 (286)
Q Consensus         1 g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~----------------   63 (286)
                      +.|+|.+++.|. +...++|+|++.|+|.+.+|++++.++|.+|.++.+...++.+|++.|++.                
T Consensus       541 ~~ftr~~evtf~g~~~~~vi~q~~~g~d~~~~l~ikt~~~G~vp~~p~~~~~hi~py~elyHys~s~vtstssr~y~~t~  620 (1289)
T KOG1214|consen  541 AAFTRDMEVTFYGGEETVVITQTAEGLDPENYLSIKTNIQGQVPYVPANFTAHISPYKELYHYSDSTVTSTSSRDYSLTF  620 (1289)
T ss_pred             cccccCceEEecCCcceeeeeeecCCCCCCceEEEecccccccceeccccccccCcchhhhhcccceeecccccceeeec
Confidence            468999999999 678899999999999999999999999999999999999999999988773                


Q ss_pred             -------------------------------------------------------------------CcCCCCCCC--CC
Q psy5750          64 -------------------------------------------------------------------STVNDDPCK--NF   74 (286)
Q Consensus        64 -------------------------------------------------------------------~~~~~~~C~--~~   74 (286)
                                                                                         .....++|-  ++
T Consensus       621 ga~~S~~~sy~~hq~ityq~C~h~~~~p~~p~tqql~vd~vfalyn~ee~~lr~a~Sn~igpV~E~S~~~~~npCy~gsh  700 (1289)
T KOG1214|consen  621 GAINSQTWSYRIHQNITYQVCRHAPRHPSFPTTQQLNVDRVFALYNDEERVLRFAVSNQIGPVKEDSDPTPVNPCYDGSH  700 (1289)
T ss_pred             CcccccceeEEEeecceeEEeecCCCCCCCCCceEeecccceeccCccccchhhhhhhcccceecCCCCcccccceecCc
Confidence                                                                               011223332  25


Q ss_pred             CCCCCCeeeeCC-CCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcc--cCCC
Q psy5750          75 FCVANSSCIVED-DKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGH  151 (286)
Q Consensus        75 ~C~~~~~C~~~~-g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~--g~~~  151 (286)
                      .|..++.|.... -.|+|.|..||.+        +++.|.++++|+.+.+.|..+++|++.+++|+|.|..||.  +++.
T Consensus       701 ~cdt~a~C~pg~~~~~tcecs~g~~g--------dgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~  772 (1289)
T KOG1214|consen  701 MCDTTARCHPGTGVDYTCECSSGYQG--------DGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRH  772 (1289)
T ss_pred             ccCCCccccCCCCcceEEEEeeccCC--------CCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCc
Confidence            577778888773 4789999999985        4889999999999889999999999999999999999876  6778


Q ss_pred             ceecccCCCCCCCCCCCCCCCCCCCCCCcc--cc-CCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCe
Q psy5750         152 QCTEITVPQTGPTSPCESDPRACNPPHSTC--TN-LTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNAD  228 (286)
Q Consensus       152 ~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C--~~-~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~  228 (286)
                      +|..+..+  ..++.|..+.+.| ...+.|  +. ..+.|.|.|.+||.|++.       .|.|+|||..+  .|++++.
T Consensus       773 tCV~i~~p--ap~n~Ce~g~h~C-~i~g~a~c~~hGgs~y~C~CLPGfsGDG~-------~c~dvDeC~ps--rChp~A~  840 (1289)
T KOG1214|consen  773 TCVLITPP--APANPCEDGSHTC-AIAGQARCVHHGGSTYSCACLPGFSGDGH-------QCTDVDECSPS--RCHPAAT  840 (1289)
T ss_pred             ceEEecCC--CCCCccccCcccc-CcCCceEEEecCCceEEEeecCCccCCcc-------ccccccccCcc--ccCCCce
Confidence            89765432  3467888877888 666554  44 446899999999999966       89999999965  5999999


Q ss_pred             eeeCCCCeeeecCCCCcCCCCCcCCCCeeecccccccccc
Q psy5750         229 CINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMY  268 (286)
Q Consensus       229 C~n~~g~y~C~C~~Gy~gdg~~C~~~~~c~~~~~~~c~~~  268 (286)
                      |+|++|+|.|+|.+||+|||+.|--. .   ..++.|+..
T Consensus       841 CyntpgsfsC~C~pGy~GDGf~CVP~-~---~~~T~C~~e  876 (1289)
T KOG1214|consen  841 CYNTPGSFSCRCQPGYYGDGFQCVPD-T---SSLTPCEQE  876 (1289)
T ss_pred             EecCCCcceeecccCccCCCceecCC-C---ccCCccccc
Confidence            99999999999999999999999322 1   124556654

>KOG1214|consensus

Probab=99.71  E-value=1.8e-16  Score=146.82  Aligned_cols=144  Identities=30%  Similarity=0.785  Sum_probs=116.9

Q ss_pred             CCCcCCCCCCCCCCCeeecCCC-CeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCC
Q psy5750         115 INECNAGTDLCHKNAMCFNEIG-SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCD  193 (286)
Q Consensus       115 ~~~C~~~~~~C~~~~~C~~~~g-~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~  193 (286)
                      .+.|..+.+.|..++.|....+ .|+|.|..||.|++..|.+        +++|+...+.| ..+..|++.+++|+|+|.
T Consensus       692 ~npCy~gsh~cdt~a~C~pg~~~~~tcecs~g~~gdgr~c~d--------~~eca~~~~~C-Gp~s~Cin~pg~~rceC~  762 (1289)
T KOG1214|consen  692 VNPCYDGSHMCDTTARCHPGTGVDYTCECSSGYQGDGRNCVD--------ENECATGFHRC-GPNSVCINLPGSYRCECR  762 (1289)
T ss_pred             cccceecCcccCCCccccCCCCcceEEEEeeccCCCCCCCCC--------hhhhccCCCCC-CCCceeecCCCceeEEEe
Confidence            4556666677888889987754 7999999999999999998        89999988999 999999999999999999


Q ss_pred             CCCCCCCCCCcccCCccc------cCCCcCCCCCCCCCCCe--eeeC-CCCeeeecCCCCcCCCCCcCCCCeeecccccc
Q psy5750         194 PGYQKDYLDDRRVAFVCT------DVDECMNYPPICNNNAD--CINR-PGTYQCQCKRGFSGDGFNCEEGKYCLVVGITL  264 (286)
Q Consensus       194 ~G~~g~~~~~~~~~~~C~------d~deC~~~~~~C~~~~~--C~n~-~g~y~C~C~~Gy~gdg~~C~~~~~c~~~~~~~  264 (286)
                      .||.-...     +..|.      .++.|....|.|+..+.  |+.. .+.|+|+|.+||.|||..|.++++|.   +..
T Consensus       763 ~gy~F~dd-----~~tCV~i~~pap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~---psr  834 (1289)
T KOG1214|consen  763 SGYEFADD-----RHTCVLITPPAPANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECS---PSR  834 (1289)
T ss_pred             ecceeccC-----CcceEEecCCCCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCccccccccccC---ccc
Confidence            99864322     22453      35678888888987654  5444 46799999999999999999999996   566


Q ss_pred             cccceeeeecc
Q psy5750         265 CKMYLEVVNIQ  275 (286)
Q Consensus       265 c~~~~~~~~~~  275 (286)
                      |...+.|++..
T Consensus       835 Chp~A~Cyntp  845 (1289)
T KOG1214|consen  835 CHPAATCYNTP  845 (1289)
T ss_pred             cCCCceEecCC
Confidence            88888887754

>KOG1219|consensus

Probab=99.52  E-value=2.3e-14  Score=143.36  Aligned_cols=112  Identities=26%  Similarity=0.680  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCCCeeeeC-CCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCc
Q psy5750          68 DDPCKNFFCVANSSCIVE-DDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF  146 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~-~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~  146 (286)
                      .++|..+||+++|+|... .++|.|.|++.|.|..|+         .++++|..  +||..+++|+...++|.|.|+.||
T Consensus      3864 ~d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CE---------i~~epC~s--nPC~~GgtCip~~n~f~CnC~~gy 3932 (4289)
T KOG1219|consen 3864 TDPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCE---------IDLEPCAS--NPCLTGGTCIPFYNGFLCNCPNGY 3932 (4289)
T ss_pred             ccccccCcccCCCEecCCCCCceEEeCcccccCcccc---------cccccccC--CCCCCCCEEEecCCCeeEeCCCCc
Confidence            389999999999999988 678999999999999998         88999998  999999999999999999999999


Q ss_pred             ccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCC
Q psy5750         147 TGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYL  201 (286)
Q Consensus       147 ~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~  201 (286)
                      +|  .+|+..      -+++|..  .+| .+++.|++..|+|.|.|.+||.|.++
T Consensus      3933 TG--~~Ce~~------Gi~eCs~--n~C-~~gg~C~n~~gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3933 TG--KRCEAR------GISECSK--NVC-GTGGQCINIPGSFHCNCTPGILGRTC 3976 (4289)
T ss_pred             cC--ceeecc------ccccccc--ccc-cCCceeeccCCceEeccChhHhcccC
Confidence            99  889762      1789987  799 99999999999999999999998864

>KOG4289|consensus

Probab=99.50  E-value=4.8e-14  Score=136.73  Aligned_cols=108  Identities=32%  Similarity=0.743  Sum_probs=90.8

Q ss_pred             CCCCCCCCCCCCCCeeee----------------------CCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCC
Q psy5750          67 NDDPCKNFFCVANSSCIV----------------------EDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL  124 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~----------------------~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~  124 (286)
                      +.+.|...||.+...|+.                      ..++++|.|++||+|.+|+         ..+|.|-+  .+
T Consensus      1178 dDniClrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~Ce---------TeiDlCYs--~p 1246 (2531)
T KOG4289|consen 1178 DDNICLREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCE---------TEIDLCYS--GP 1246 (2531)
T ss_pred             cCchhhcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCccccc---------chhHhhhc--CC
Confidence            456688889988888863                      3456899999999999999         88999998  89


Q ss_pred             CCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCcccc-CCCCceeeCCCC
Q psy5750         125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN-LTDYRTCNCDPG  195 (286)
Q Consensus       125 C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~-~~g~~~C~C~~G  195 (286)
                      |.+++.|....|+|+|.|.+||+|  ..|+..     ...-.|..  ..| +++++|++ ..+++.|.|+.|
T Consensus      1247 C~nng~C~srEggYtCeCrpg~tG--ehCEvs-----~~agrCvp--GvC-~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1247 CGNNGRCRSREGGYTCECRPGFTG--EHCEVS-----ARAGRCVP--GVC-KNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred             CCCCCceEEecCceeEEecCCccc--cceeee-----cccCcccc--cee-cCCCEEeecCCCceeccCCCc
Confidence            999999999999999999999999  888741     12345666  789 99999998 458899999987

>KOG1219|consensus

Probab=99.48  E-value=8e-14  Score=139.60  Aligned_cols=114  Identities=32%  Similarity=0.942  Sum_probs=101.0

Q ss_pred             CCccC-CCcCCCCCCCCCCCeeecCC-CCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCc
Q psy5750         111 GCFDI-NECNAGTDLCHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR  188 (286)
Q Consensus       111 ~C~~~-~~C~~~~~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~  188 (286)
                      .|... +.|..  +||++++.|...+ ++|.|.|++-|+|  ..|+.       ++.+|..  .|| ..+++|+...++|
T Consensus      3859 gC~l~~d~C~~--npCqhgG~C~~~~~ggy~CkCpsqysG--~~CEi-------~~epC~s--nPC-~~GgtCip~~n~f 3924 (4289)
T KOG1219|consen 3859 GCSLLTDPCND--NPCQHGGTCISQPKGGYKCKCPSQYSG--NHCEI-------DLEPCAS--NPC-LTGGTCIPFYNGF 3924 (4289)
T ss_pred             ccccccccccc--CcccCCCEecCCCCCceEEeCcccccC--ccccc-------ccccccC--CCC-CCCCEEEecCCCe
Confidence            45433 88988  9999999998876 6899999999999  99986       4789998  799 9999999999999


Q ss_pred             eeeCCCCCCCCCCCCcccCCcc-c-cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         189 TCNCDPGYQKDYLDDRRVAFVC-T-DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       189 ~C~C~~G~~g~~~~~~~~~~~C-~-d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      .|.|+.||+|.         .| . .++||+.+  .|.++|.|+|.+|+|.|.|.+||.|.  .|
T Consensus      3925 ~CnC~~gyTG~---------~Ce~~Gi~eCs~n--~C~~gg~C~n~~gsf~CncT~g~~gr--~c 3976 (4289)
T KOG1219|consen 3925 LCNCPNGYTGK---------RCEARGISECSKN--VCGTGGQCINIPGSFHCNCTPGILGR--TC 3976 (4289)
T ss_pred             eEeCCCCccCc---------eeecccccccccc--cccCCceeeccCCceEeccChhHhcc--cC
Confidence            99999999999         56 2 38999876  49999999999999999999999988  66

>smart00682 G2F G2 nidogen domain and fibulin

Probab=99.34  E-value=2.8e-12  Score=104.74  Aligned_cols=63  Identities=30%  Similarity=0.564  Sum_probs=61.8

Q ss_pred             CccceEEEEEECCCCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec
Q psy5750           1 GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS   63 (286)
Q Consensus         1 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~   63 (286)
                      |.|+|+++|+|.+|+.|+|+|+|+|+|.+++|++++.+.|.+|.+++++.+++.||.|.|+++
T Consensus        86 G~F~~~s~v~F~~ge~l~i~Q~~~GlD~~~~L~v~~~i~G~vP~ip~~a~v~i~dY~E~Y~~t  148 (227)
T smart00682       86 GVFTRETEVTFAGGEILRIKQTFSGLDEHGYLKVKIEVSGRVPQVAAGAEVTIPDYTEEYTYT  148 (227)
T ss_pred             eEEEEEEEEEECCCCEEEEEEEEeccCccccEEEEEEEEeecCCCCCCCeEEeCCceeEEEEe
Confidence            789999999999999999999999999999999999999999999999999999999999986

>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma

Probab=99.29  E-value=6e-12  Score=100.90  Aligned_cols=63  Identities=30%  Similarity=0.532  Sum_probs=49.8

Q ss_pred             CccceEEEEEECCCCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec
Q psy5750           1 GVFNYSAELIFSTGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS   63 (286)
Q Consensus         1 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~   63 (286)
                      |.|+|+++|+|.+|+.|+|+|+|.|+|.++.|.+++.+.|.+|.++.++.+++.||.|.|+++
T Consensus        86 G~F~~~s~v~F~tGe~l~itq~~~GlD~~~~L~~d~~i~G~vP~i~~~a~v~i~dy~E~Y~~t  148 (192)
T PF07474_consen   86 GEFNRESEVEFATGERLTITQTARGLDSDGYLLLDTVISGQVPQIPAGADVHIQDYTEEYVQT  148 (192)
T ss_dssp             TEEEEEEEEEESSS--EEEEEEEEEE-TTS-EEEEEEEEEEE----TT-EEE---EEEEEEEE
T ss_pred             cEEEEEEEEEEeCCCEEEEEEEecccCCCCcEEEEEEEeccCCCCCCCCeEEeCChhheeEEe
Confidence            789999999999999999999999999999999999999999999999999999999999986

By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.

>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix

Probab=99.27  E-value=1.2e-11  Score=101.25  Aligned_cols=63  Identities=27%  Similarity=0.477  Sum_probs=61.4

Q ss_pred             CccceEEEEEECC-CCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec
Q psy5750           1 GVFNYSAELIFST-GQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS   63 (286)
Q Consensus         1 g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~   63 (286)
                      |.|+|+++|+|.+ |+.|+|+|+|.|+|.+++|++++.+.|.+|.+++++.+++.||.|.|++.
T Consensus        84 G~F~~~~~v~F~~~ge~l~I~Q~~~GlD~~~~L~~~~~i~G~vP~i~~~a~v~i~dY~E~Y~~t  147 (224)
T cd00255          84 GEFTRQAEVTFYTGGEKLRITQVARGLDSHGHLLLDTVISGRVPQVPAGATVHIEDYTELYHYT  147 (224)
T ss_pred             ceEEEEEEEEEcCCCEEEEEEEEEeccCccCeEEEEEEEEeecCCCCCCCeEEeCCCeeeEEEc
Confidence            7899999999995 99999999999999999999999999999999999999999999999986

Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.

>KOG1217|consensus

Probab=99.13  E-value=8.5e-10  Score=102.39  Aligned_cols=183  Identities=30%  Similarity=0.716  Sum_probs=131.2

Q ss_pred             CCCCC--CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCcc-----------CCCcCCCCCCCCCC-CeeecC
Q psy5750          69 DPCKN--FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFD-----------INECNAGTDLCHKN-AMCFNE  134 (286)
Q Consensus        69 ~~C~~--~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~-----------~~~C~~~~~~C~~~-~~C~~~  134 (286)
                      ++|..  .+|.+.+.|.+..++|.|.|+++|.+..++.. ..+..|.+           ...|......|... +.|++.
T Consensus       170 ~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~-~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~c~~~  248 (487)
T KOG1217|consen  170 DECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT-GNGGTCVDSVACSCPPGARGPECEVSIVECASGDGTCVNT  248 (487)
T ss_pred             cccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC-CCCceEecceeccCCCCCCCCCcccccccccCCCCccccc
Confidence            68874  57999999999999999999999998876521 00112221           22333322334333 789999


Q ss_pred             CCCeeEeCCCCcccCC-CceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccC
Q psy5750         135 IGSYSCQCRPGFTGNG-HQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV  213 (286)
Q Consensus       135 ~g~~~C~C~~G~~g~~-~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~  213 (286)
                      .++|.|.|++||.++. ..|.+        ++.|..... | .++++|++..+.|.|.|++||.+...      ..+.+.
T Consensus       249 ~~~~~C~~~~g~~~~~~~~~~~--------~~~C~~~~~-c-~~~~~C~~~~~~~~C~C~~g~~g~~~------~~~~~~  312 (487)
T KOG1217|consen  249 VGSYTCRCPEGYTGDACVTCVD--------VDSCALIAS-C-PNGGTCVNVPGSYRCTCPPGFTGRLC------TECVDV  312 (487)
T ss_pred             CCceeeeCCCCccccccceeee--------ccccCCCCc-c-CCCCeeecCCCcceeeCCCCCCCCCC------cccccc
Confidence            9999999999999865 45666        889988644 8 88899999999899999999999843      145667


Q ss_pred             CCcCC--CCCCCCCCCee--eeCCCCeeeecCCCCcCCCCCcCCCC-eeecccccccccceeeee
Q psy5750         214 DECMN--YPPICNNNADC--INRPGTYQCQCKRGFSGDGFNCEEGK-YCLVVGITLCKMYLEVVN  273 (286)
Q Consensus       214 deC~~--~~~~C~~~~~C--~n~~g~y~C~C~~Gy~gdg~~C~~~~-~c~~~~~~~c~~~~~~~~  273 (286)
                      ++|..  ....|.+++.|  .+..+.+.|.|..||.|.  .|+... .|....   +...+.+++
T Consensus       313 ~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~--~C~~~~~~C~~~~---~~~~~~c~~  372 (487)
T KOG1217|consen  313 DECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGR--RCEDSNDECASSP---CCPGGTCVN  372 (487)
T ss_pred             ccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCC--ccccCCccccCCc---cccCCEecc
Confidence            78852  33558888888  344567889999997666  887664 675543   555555554

>KOG1217|consensus

Probab=99.08  E-value=1.3e-09  Score=101.06  Aligned_cols=163  Identities=33%  Similarity=0.765  Sum_probs=115.8

Q ss_pred             CCCCeeeeC---CCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCce
Q psy5750          77 VANSSCIVE---DDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQC  153 (286)
Q Consensus        77 ~~~~~C~~~---~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C  153 (286)
                      ...+.|.+.   ...+.|.|..||.+..+.         ...++|.....+|.+.+.|.+..++|.|.|+++|.+  ..|
T Consensus       137 ~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~---------~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~--~~~  205 (487)
T KOG1217|consen  137 CIDGSCSNGPGSVGPFRCSCTEGYEGEPCE---------TDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTG--STC  205 (487)
T ss_pred             eCchhhcCCCCCCCceeeeeCCCccccccc---------ccccccccCCCCcCCCcccccCCCCeeEeCCCCccC--CcC
Confidence            345566654   347899999999977555         233678754577999999999999999999999987  333


Q ss_pred             ecc------------cCCCCCCCCCCCCCCCCCCCCC-CccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCC
Q psy5750         154 TEI------------TVPQTGPTSPCESDPRACNPPH-STCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYP  220 (286)
Q Consensus       154 ~~~------------~~~~~~~~~~C~~~~~~C~~~~-~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~  220 (286)
                      ...            ..+.....+.|......| ... +.|++..++|.|.|++||.+...      ..|.++++|....
T Consensus       206 ~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~-~~~~~~c~~~~~~~~C~~~~g~~~~~~------~~~~~~~~C~~~~  278 (487)
T KOG1217|consen  206 ETTGNGGTCVDSVACSCPPGARGPECEVSIVEC-ASGDGTCVNTVGSYTCRCPEGYTGDAC------VTCVDVDSCALIA  278 (487)
T ss_pred             cCCCCCceEecceeccCCCCCCCCCcccccccc-cCCCCcccccCCceeeeCCCCcccccc------ceeeeccccCCCC
Confidence            220            000000122333332334 333 78999889999999999999841      1578999999876


Q ss_pred             CCCCCCCeeeeCCCCeeeecCCCCcCCCC-CcCCCCeee
Q psy5750         221 PICNNNADCINRPGTYQCQCKRGFSGDGF-NCEEGKYCL  258 (286)
Q Consensus       221 ~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~-~C~~~~~c~  258 (286)
                      + |.++++|++..+.|.|.|++||.|..- .|.....|.
T Consensus       279 ~-c~~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~  316 (487)
T KOG1217|consen  279 S-CPNGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECS  316 (487)
T ss_pred             c-cCCCCeeecCCCcceeeCCCCCCCCCCcccccccccc
Confidence            5 999999999999999999999999853 343445553

>KOG4289|consensus

Probab=98.99  E-value=6.5e-10  Score=108.82  Aligned_cols=98  Identities=29%  Similarity=0.765  Sum_probs=77.5

Q ss_pred             CCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccC
Q psy5750         134 EIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV  213 (286)
Q Consensus       134 ~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~  213 (286)
                      ..++++|+|++||+|  ..|+.       .+|.|-.  .+| .+++.|....|+|+|+|.+||+|..+...      ...
T Consensus      1218 pvnglrCrCPpGFTg--d~CeT-------eiDlCYs--~pC-~nng~C~srEggYtCeCrpg~tGehCEvs------~~a 1279 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFTG--DYCET-------EIDLCYS--GPC-GNNGRCRSREGGYTCECRPGFTGEHCEVS------ARA 1279 (2531)
T ss_pred             ccCceeEeCCCCCCc--ccccc-------hhHhhhc--CCC-CCCCceEEecCceeEEecCCccccceeee------ccc
Confidence            345689999999999  68876       4899988  799 99999999999999999999999944210      122


Q ss_pred             CCcCCCCCCCCCCCeeeeC-CCCeeeecCCCCcCCCCCcC
Q psy5750         214 DECMNYPPICNNNADCINR-PGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~-~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      -.|..  ..|.++++|+|. .|.|.|.|+.| .-.+..|+
T Consensus      1280 grCvp--GvC~nggtC~~~~nggf~c~Cp~g-e~e~prC~ 1316 (2531)
T KOG4289|consen 1280 GRCVP--GVCKNGGTCVNLLNGGFCCHCPYG-EFEDPRCE 1316 (2531)
T ss_pred             Ccccc--ceecCCCEEeecCCCceeccCCCc-ccCCCceE
Confidence            34654  579999999987 57899999998 43444673

>KOG4260|consensus

Probab=98.90  E-value=9.5e-10  Score=90.78  Aligned_cols=146  Identities=29%  Similarity=0.669  Sum_probs=99.5

Q ss_pred             CCCCCCCeeeeC---CCCCeEecCCCcccccccccCCCCCCCccCCC----cCCCCCCCCCCCeeecCCCCeeE-eCCCC
Q psy5750          74 FFCVANSSCIVE---DDKPTCICNRGFQQLYSEDRLQDDFGCFDINE----CNAGTDLCHKNAMCFNEIGSYSC-QCRPG  145 (286)
Q Consensus        74 ~~C~~~~~C~~~---~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~----C~~~~~~C~~~~~C~~~~g~~~C-~C~~G  145 (286)
                      .||..++.|...   .|+-+|.|.+||.|+.|..-.. +..=...++    |..-..+|..  .|... ++-.| .|+.|
T Consensus       150 r~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~-eyfes~Rne~~lvCt~Ch~~C~~--~Csg~-~~k~C~kCkkG  225 (350)
T KOG4260|consen  150 RPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGI-EYFESSRNEQHLVCTACHEGCLG--VCSGE-SSKGCSKCKKG  225 (350)
T ss_pred             CCcCCCCcccCCCCCCCCCcccccCCCCCccccccch-HHHHhhcccccchhhhhhhhhhc--ccCCC-CCCChhhhccc
Confidence            689889999754   5677999999999987752111 000000011    1110022322  34322 22344 59999


Q ss_pred             cccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCC-
Q psy5750         146 FTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICN-  224 (286)
Q Consensus       146 ~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~-  224 (286)
                      |..+...|.+        +++|...+.+| .....|+|+.|+|.|++.+||.+.             +|+|..--..|. 
T Consensus       226 W~lde~gCvD--------vnEC~~ep~~c-~~~qfCvNteGSf~C~dk~Gy~~g-------------~d~C~~~~d~~~~  283 (350)
T KOG4260|consen  226 WKLDEEGCVD--------VNECQNEPAPC-KAHQFCVNTEGSFKCEDKEGYKKG-------------VDECQFCADVCAS  283 (350)
T ss_pred             ceeccccccc--------HHHHhcCCCCC-ChhheeecCCCceEecccccccCC-------------hHHhhhhhhhccc
Confidence            9987788998        99999888899 888999999999999999999763             455543112233 


Q ss_pred             CCCeeeeCCCCeeeecCCCCc
Q psy5750         225 NNADCINRPGTYQCQCKRGFS  245 (286)
Q Consensus       225 ~~~~C~n~~g~y~C~C~~Gy~  245 (286)
                      .+..|.|++++|+|+|..|+.
T Consensus       284 kn~~c~ni~~~~r~v~f~~~~  304 (350)
T KOG4260|consen  284 KNRPCMNIDGQYRCVCFSGLI  304 (350)
T ss_pred             CCCCcccCCccEEEEecccce
Confidence            466899999999999999976

>KOG4260|consensus

Probab=98.90  E-value=1.5e-09  Score=89.60  Aligned_cols=137  Identities=26%  Similarity=0.620  Sum_probs=89.9

Q ss_pred             ecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecC---CCCeeEeCCCCcccCCCceecccCC-----CCCC
Q psy5750          92 ICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE---IGSYSCQCRPGFTGNGHQCTEITVP-----QTGP  163 (286)
Q Consensus        92 ~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~---~g~~~C~C~~G~~g~~~~C~~~~~~-----~~~~  163 (286)
                      -|++|..|+.|.       .|....     ..+|..++.|...   .|+-.|.|.+||.|  ..|....+.     +...
T Consensus       131 CCp~gtyGpdCl-------~Cpggs-----er~C~GnG~C~GdGsR~GsGkCkC~~GY~G--p~C~~Cg~eyfes~Rne~  196 (350)
T KOG4260|consen  131 CCPDGTYGPDCL-------QCPGGS-----ERPCFGNGSCHGDGSREGSGKCKCETGYTG--PLCRYCGIEYFESSRNEQ  196 (350)
T ss_pred             ccCCCCcCCccc-------cCCCCC-----cCCcCCCCcccCCCCCCCCCcccccCCCCC--ccccccchHHHHhhcccc
Confidence            377887777554       232211     1667777888633   46779999999999  777542110     0001


Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCcee-eCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTC-NCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKR  242 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C-~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~  242 (286)
                      --.|..-...|   .+.|.. ..+..| +|..||..+.-       .|.|||||...+..|..+..|+|+.|||+|.+++
T Consensus       197 ~lvCt~Ch~~C---~~~Csg-~~~k~C~kCkkGW~lde~-------gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~  265 (350)
T KOG4260|consen  197 HLVCTACHEGC---LGVCSG-ESSKGCSKCKKGWKLDEE-------GCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKE  265 (350)
T ss_pred             cchhhhhhhhh---hcccCC-CCCCChhhhcccceeccc-------ccccHHHHhcCCCCCChhheeecCCCceEecccc
Confidence            11222111223   224432 334456 79999988744       7999999999988999999999999999999999


Q ss_pred             CCcCCCCCcCC
Q psy5750         243 GFSGDGFNCEE  253 (286)
Q Consensus       243 Gy~gdg~~C~~  253 (286)
                      ||.++--.|+.
T Consensus       266 Gy~~g~d~C~~  276 (350)
T KOG4260|consen  266 GYKKGVDECQF  276 (350)
T ss_pred             cccCChHHhhh
Confidence            99984334544

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.89  E-value=1.2e-09  Score=66.19  Aligned_cols=34  Identities=41%  Similarity=1.084  Sum_probs=32.6

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCc
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFS  245 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~  245 (286)
                      |||||...++.|..++.|+|+.|+|.|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            7899999889999899999999999999999999

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1225|consensus

Probab=98.83  E-value=2.9e-08  Score=91.21  Aligned_cols=126  Identities=30%  Similarity=0.807  Sum_probs=84.1

Q ss_pred             eEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCC
Q psy5750          90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCES  169 (286)
Q Consensus        90 ~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~  169 (286)
                      .|.|..+|.++.|.     ...|      .   +.|..++.|++.    +|.|++||+|  ..|..         -.|..
T Consensus       235 ic~c~~~~~g~~c~-----~~~C------~---~~c~~~g~c~~G----~CIC~~Gf~G--~dC~e---------~~Cp~  285 (525)
T KOG1225|consen  235 ICECPEGYFGPLCS-----TIYC------P---GGCTGRGQCVEG----RCICPPGFTG--DDCDE---------LVCPV  285 (525)
T ss_pred             eeecCCceeCCccc-----cccC------C---CCCcccceEeCC----eEeCCCCCcC--CCCCc---------ccCCc
Confidence            68888888877554     2222      2   455556778776    8999999998  66654         22332


Q ss_pred             CCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCC
Q psy5750         170 DPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGF  249 (286)
Q Consensus       170 ~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~  249 (286)
                         .| ..++.+++.    .|.|.+||.|.         .|+ +-+|.   ..|.+++.|+  .|  +|.|.+||+|+  
T Consensus       286 ---~c-s~~g~~~~g----~CiC~~g~~G~---------dCs-~~~cp---adC~g~G~Ci--~G--~C~C~~Gy~G~--  338 (525)
T KOG1225|consen  286 ---DC-SGGGVCVDG----ECICNPGYSGK---------DCS-IRRCP---ADCSGHGKCI--DG--ECLCDEGYTGE--  338 (525)
T ss_pred             ---cc-CCCceecCC----EeecCCCcccc---------ccc-cccCC---ccCCCCCccc--CC--ceEeCCCCcCC--
Confidence               25 445566554    89999999998         443 33354   3499999998  23  79999999988  


Q ss_pred             CcCCCCeeecccccccccceeeeecccccCCc
Q psy5750         250 NCEEGKYCLVVGITLCKMYLEVVNIQEICGEN  281 (286)
Q Consensus       250 ~C~~~~~c~~~~~~~c~~~~~~~~~~~~~~~~  281 (286)
                      .|+..        . |.+..-+++. .+|.++
T Consensus       339 ~C~~~--------~-C~~~g~cv~g-C~C~~G  360 (525)
T KOG1225|consen  339 LCIQR--------A-CSGGGQCVNG-CKCKKG  360 (525)
T ss_pred             ccccc--------c-cCCCceeccC-ceeccC
Confidence            77443        2 5566666666 555554

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=98.81  E-value=1.9e-09  Score=62.49  Aligned_cols=36  Identities=47%  Similarity=1.148  Sum_probs=28.8

Q ss_pred             cCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         216 CMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       216 C~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      |...++.|+.+|+|++++++|.|+|++||.|||+.|
T Consensus         1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~C   36 (36)
T PF12947_consen    1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEGDGFFC   36 (36)
T ss_dssp             TTTGGGGS-TTCEEEE-TTSEEEEE-CEEECCSTCE
T ss_pred             CCCCCCCCCCCcEeecCCCCEEeECCCCCccCCcCC
Confidence            344456799999999999999999999999999876

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1225|consensus

Probab=98.71  E-value=7.2e-08  Score=88.69  Aligned_cols=110  Identities=31%  Similarity=0.954  Sum_probs=81.5

Q ss_pred             CCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceec
Q psy5750          76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTE  155 (286)
Q Consensus        76 C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~  155 (286)
                      |...+.|++.    +|.|++||.|..|.     ...      |.   ..|..++.+++.    .|.|++||.|  ..|+.
T Consensus       256 c~~~g~c~~G----~CIC~~Gf~G~dC~-----e~~------Cp---~~cs~~g~~~~g----~CiC~~g~~G--~dCs~  311 (525)
T KOG1225|consen  256 CTGRGQCVEG----RCICPPGFTGDDCD-----ELV------CP---VDCSGGGVCVDG----ECICNPGYSG--KDCSI  311 (525)
T ss_pred             CcccceEeCC----eEeCCCCCcCCCCC-----ccc------CC---cccCCCceecCC----EeecCCCccc--ccccc
Confidence            4444667765    79999999988776     233      33   237666777665    8999999999  77764


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCC
Q psy5750         156 ITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGT  235 (286)
Q Consensus       156 ~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~  235 (286)
                               ..|.   ..| ..++.|++.    +|.|.+||+|.         .|...       . |.+++.|+|.   
T Consensus       312 ---------~~cp---adC-~g~G~Ci~G----~C~C~~Gy~G~---------~C~~~-------~-C~~~g~cv~g---  354 (525)
T KOG1225|consen  312 ---------RRCP---ADC-SGHGKCIDG----ECLCDEGYTGE---------LCIQR-------A-CSGGGQCVNG---  354 (525)
T ss_pred             ---------ccCC---ccC-CCCCcccCC----ceEeCCCCcCC---------ccccc-------c-cCCCceeccC---
Confidence                     3343   478 888999844    99999999998         55432       2 7888889852   


Q ss_pred             eeeecCCCCcCCC
Q psy5750         236 YQCQCKRGFSGDG  248 (286)
Q Consensus       236 y~C~C~~Gy~gdg  248 (286)
                        |+|..||+|..
T Consensus       355 --C~C~~Gw~G~d  365 (525)
T KOG1225|consen  355 --CKCKKGWRGPD  365 (525)
T ss_pred             --ceeccCccCCC
Confidence              99999999874

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=98.39  E-value=7.5e-08  Score=75.71  Aligned_cols=144  Identities=31%  Similarity=0.700  Sum_probs=92.4

Q ss_pred             CCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCC---CCCCCCCCCeeecCC-----CCeeEeCCCCc
Q psy5750          75 FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNA---GTDLCHKNAMCFNEI-----GSYSCQCRPGF  146 (286)
Q Consensus        75 ~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~---~~~~C~~~~~C~~~~-----g~~~C~C~~G~  146 (286)
                      .|. +|..++..+.|.|.|.+||...       ...+|....+|..   -..+|...+.|++..     ..|.|.|..||
T Consensus         7 ~CK-NG~LiQMSNHfEC~Cnegfvl~-------~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY   78 (197)
T PF06247_consen    7 ICK-NGYLIQMSNHFECKCNEGFVLK-------NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGY   78 (197)
T ss_dssp             --B-TEEEEEESSEEEEEESTTEEEE-------ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTE
T ss_pred             ccc-CCEEEEccCceEEEcCCCcEEc-------cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCc
Confidence            454 5677778889999999999876       2456666666654   127899999998775     57999999999


Q ss_pred             ccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccC---CCCceeeCCCCCCCCCCCCcccCCcc--ccCCCcCCCCC
Q psy5750         147 TGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL---TDYRTCNCDPGYQKDYLDDRRVAFVC--TDVDECMNYPP  221 (286)
Q Consensus       147 ~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~---~g~~~C~C~~G~~g~~~~~~~~~~~C--~d~deC~~~~~  221 (286)
                      +.....|.+         +.|..  ..| . .+.|+..   +....|+|.-|++..      +...|  +...+|...  
T Consensus        79 ~~~~~vCvp---------~~C~~--~~C-g-~GKCI~d~~~~~~~~CSC~IGkV~~------dn~kCtk~G~T~C~LK--  137 (197)
T PF06247_consen   79 ILKQGVCVP---------NKCNN--KDC-G-SGKCILDPDNPNNPTCSCNIGKVPD------DNKKCTKTGETKCSLK--  137 (197)
T ss_dssp             EESSSSEEE---------GGGSS------T-TEEEEEEEGGGSEEEEEE-TEEETT------TTTESEEEE---------
T ss_pred             eeeCCeEch---------hhcCc--eec-C-CCeEEecCCCCCCceeEeeeceEec------cCCcccCCCccceeee--
Confidence            976678875         56766  567 4 6788752   234499999999822      12267  344578764  


Q ss_pred             CCCCCCeeeeCCCCeeeecCCCCcCCC
Q psy5750         222 ICNNNADCINRPGTYQCQCKRGFSGDG  248 (286)
Q Consensus       222 ~C~~~~~C~n~~g~y~C~C~~Gy~gdg  248 (286)
                       |..+..|....+-|.|.|.+||.+++
T Consensus       138 -Ck~nE~CK~~~~~Y~C~~~~~~~~~~  163 (197)
T PF06247_consen  138 -CKENEECKLVDGYYKCVCKEGFPGDG  163 (197)
T ss_dssp             --TTTEEEEEETTEEEEEE-TT-EEET
T ss_pred             -cCCCcceeeeCcEEEeecCCCCCCCC
Confidence             88889999999999999999998764

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>KOG1226|consensus

Probab=98.37  E-value=1.6e-05  Score=75.18  Aligned_cols=163  Identities=23%  Similarity=0.574  Sum_probs=101.3

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCC--CCCCCCCCeeecCCCCeeEeCCCCccc--C
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAG--TDLCHKNAMCFNEIGSYSCQCRPGFTG--N  149 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~--~~~C~~~~~C~~~~g~~~C~C~~G~~g--~  149 (286)
                      ..|..+|+++-.    .|.|.+||.|..|+-......+-...+.|...  ..+|...+.|.=.    +|.|.+...+  .
T Consensus       467 ~~C~g~G~~~CG----~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~  538 (783)
T KOG1226|consen  467 ALCHGNGTFVCG----QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIY  538 (783)
T ss_pred             cccCCCCcEEec----ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCcee
Confidence            445555555544    58999999999887211111110123455432  2478888888766    6888776551  1


Q ss_pred             CCceecccCCCCCCCCCCCCC-CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcc-ccCCCcCCCC-CCCCCC
Q psy5750         150 GHQCTEITVPQTGPTSPCESD-PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYP-PICNNN  226 (286)
Q Consensus       150 ~~~C~~~~~~~~~~~~~C~~~-~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C-~d~deC~~~~-~~C~~~  226 (286)
                      |..|+-       +.-.|... ...| ..++.|.=.    +|.|.+||+|..+       .| .+.|.|.... ..|...
T Consensus       539 G~fCEC-------DnfsC~r~~g~lC-~g~G~C~CG----~CvC~~GwtG~~C-------~C~~std~C~~~~G~iCSGr  599 (783)
T KOG1226|consen  539 GKFCEC-------DNFSCERHKGVLC-GGHGRCECG----RCVCNPGWTGSAC-------NCPLSTDTCESSDGQICSGR  599 (783)
T ss_pred             eeeeec-------cCcccccccCccc-CCCCeEeCC----cEEcCCCCccCCC-------CCCCCCccccCCCCceeCCC
Confidence            266654       12223321 1346 556666543    8999999999977       56 6777886543 357777


Q ss_pred             CeeeeCCCCeeeecCCC-CcCCCCCcCCCCeeecccccccccceeeee
Q psy5750         227 ADCINRPGTYQCQCKRG-FSGDGFNCEEGKYCLVVGITLCKMYLEVVN  273 (286)
Q Consensus       227 ~~C~n~~g~y~C~C~~G-y~gdg~~C~~~~~c~~~~~~~c~~~~~~~~  273 (286)
                      ++|.=.    +|+|... |.|.  .||.-..|    ..+|..+..||.
T Consensus       600 G~C~Cg----~C~C~~~~~sG~--~CE~cptc----~~~C~~~~~Cve  637 (783)
T KOG1226|consen  600 GTCECG----RCKCTDPPYSGE--FCEKCPTC----PDPCAENKSCVE  637 (783)
T ss_pred             ceeeCC----ceEcCCCCcCcc--hhhcCCCC----CCcccccccchh
Confidence            777522    6888865 8887  88877777    334777776654

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.36  E-value=4e-07  Score=55.06  Aligned_cols=34  Identities=50%  Similarity=1.155  Sum_probs=32.0

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcc
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT  147 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~  147 (286)
                      |||||..+.+.|..++.|+|+.|+|.|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            6899998888999899999999999999999998

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.32  E-value=9.7e-07  Score=52.28  Aligned_cols=38  Identities=45%  Similarity=1.146  Sum_probs=31.6

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      ++|+|... ..|.+++.|+|..++|.|.|++||. +|..|
T Consensus         1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~-~g~~C   38 (39)
T smart00179        1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT-DGRNC   38 (39)
T ss_pred             CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCc-cCCcC
Confidence            46888763 4599999999999999999999999 55576

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=98.07  E-value=2.1e-06  Score=49.71  Aligned_cols=32  Identities=50%  Similarity=1.190  Sum_probs=26.3

Q ss_pred             CCCCCCCCeeecCCCCeeEeCCCCcccCCCce
Q psy5750         122 TDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQC  153 (286)
Q Consensus       122 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C  153 (286)
                      .+.|+.+|.|+++.++|.|.|++||.|+|..|
T Consensus         5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~C   36 (36)
T PF12947_consen    5 NGGCHPNATCTNTGGSYTCTCKPGYEGDGFFC   36 (36)
T ss_dssp             GGGS-TTCEEEE-TTSEEEEE-CEEECCSTCE
T ss_pred             CCCCCCCcEeecCCCCEEeECCCCCccCCcCC
Confidence            46799999999999999999999999998765

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.01  E-value=3e-06  Score=47.86  Aligned_cols=26  Identities=42%  Similarity=1.206  Sum_probs=24.3

Q ss_pred             CCCCCCeeeeCC-CCeeeecCCCCcCC
Q psy5750         222 ICNNNADCINRP-GTYQCQCKRGFSGD  247 (286)
Q Consensus       222 ~C~~~~~C~n~~-g~y~C~C~~Gy~gd  247 (286)
                      .|.++|+|++.. ++|.|+|++||.|+
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            599999999998 99999999999986

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG1226|consensus

Probab=97.81  E-value=0.00014  Score=69.03  Aligned_cols=131  Identities=20%  Similarity=0.464  Sum_probs=82.2

Q ss_pred             eEeCCCCcccCCCceecccCCCCC--CCCCCCCC--CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccC-
Q psy5750         139 SCQCRPGFTGNGHQCTEITVPQTG--PTSPCESD--PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV-  213 (286)
Q Consensus       139 ~C~C~~G~~g~~~~C~~~~~~~~~--~~~~C~~~--~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~-  213 (286)
                      .|.|.+||.|  ..|+-.......  ..+.|...  ..+| ...+.|+=.    +|.|.+...+.     ..+..|+.- 
T Consensus       479 ~C~C~~G~~G--~~CEC~~~~~ss~~~~~~Cr~~~~~~vC-SgrG~C~CG----qC~C~~~~~~~-----i~G~fCECDn  546 (783)
T KOG1226|consen  479 QCRCDEGWLG--KKCECSTDELSSSEEEDKCRENSDSPVC-SGRGDCVCG----QCVCHKPDNGK-----IYGKFCECDN  546 (783)
T ss_pred             ceecCCCCCC--CcccCCccccCcHhHHhhccCCCCCCCc-CCCCcEeCC----ceEecCCCCCc-----eeeeeeeccC
Confidence            6799999999  665421111000  12344321  1256 556666543    78888776632     111244321 


Q ss_pred             CCcCCC-CCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCC-CCeeecccccccccceeeeecccccCCccccC
Q psy5750         214 DECMNY-PPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE-GKYCLVVGITLCKMYLEVVNIQEICGENSISG  285 (286)
Q Consensus       214 deC~~~-~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~-~~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~  285 (286)
                      -.|... ..+|..+++|.=.    +|+|.+||+|+-=.|.. .+.|..++...|++++++.-++.+|+...++|
T Consensus       547 fsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg~C~C~~~~~sG  616 (783)
T KOG1226|consen  547 FSCERHKGVLCGGHGRCECG----RCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECGRCKCTDPPYSG  616 (783)
T ss_pred             cccccccCcccCCCCeEeCC----cEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCCceEcCCCCcCc
Confidence            124322 2358888888532    79999999998444433 45787788889999999999999999987665

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.80  E-value=1.2e-05  Score=45.45  Aligned_cols=30  Identities=27%  Similarity=0.581  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCeeeeCC-CCCeEecCCCcccc
Q psy5750          71 CKNFFCVANSSCIVED-DKPTCICNRGFQQL  100 (286)
Q Consensus        71 C~~~~C~~~~~C~~~~-g~~~C~C~~g~~~~  100 (286)
                      |.++||.++++|+... +.|.|.|++||.|.
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            5567999999999998 99999999999875

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.79  E-value=3.6e-05  Score=44.88  Aligned_cols=36  Identities=42%  Similarity=1.136  Sum_probs=29.9

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      +++|... ..|.+++.|++..++|.|.|++||.|.  .|
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g~--~C   37 (38)
T cd00054           2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTGR--NC   37 (38)
T ss_pred             cccCCCC-CCcCCCCEeECCCCCeEeECCCCCcCC--cC
Confidence            5778652 359888999999999999999999985  55

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.75  E-value=4.4e-05  Score=44.98  Aligned_cols=35  Identities=20%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             CCCCCCC-CCCCCCCeeeeCCCCCeEecCCCcc-ccc
Q psy5750          67 NDDPCKN-FFCVANSSCIVEDDKPTCICNRGFQ-QLY  101 (286)
Q Consensus        67 ~~~~C~~-~~C~~~~~C~~~~g~~~C~C~~g~~-~~~  101 (286)
                      ++++|.. .+|.++++|++..++|.|.|++||. +..
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~   37 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN   37 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCc
Confidence            3678887 7999999999999999999999998 543

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.65  E-value=4.6e-05  Score=39.61  Aligned_cols=24  Identities=46%  Similarity=0.873  Sum_probs=19.6

Q ss_pred             CceeeCCCCCCCCCCCCcccCCccccCCC
Q psy5750         187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDE  215 (286)
Q Consensus       187 ~~~C~C~~G~~g~~~~~~~~~~~C~d~de  215 (286)
                      +|+|.|++||....     ++..|+||||
T Consensus         1 sy~C~C~~Gy~l~~-----d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSP-----DGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCC-----CCCccccCCC
Confidence            58999999999763     3458999987

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.57  E-value=0.00014  Score=41.72  Aligned_cols=30  Identities=43%  Similarity=1.226  Sum_probs=26.1

Q ss_pred             CCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         221 PICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       221 ~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      ..|.+++.|++..++|.|.|+.||.|+ ..|
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~-~~C   35 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGD-RSC   35 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCccc-CCc
Confidence            458888999999999999999999987 445

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.56  E-value=4.6e-05  Score=44.04  Aligned_cols=29  Identities=41%  Similarity=1.103  Sum_probs=22.1

Q ss_pred             CCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         221 PICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       221 ~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      ..|.+  .|+|++++|+|.|++||.-  |+++|
T Consensus         6 GgC~h--~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    6 GGCSH--ICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             GGSSS--EEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCcCC--CCccCCCceEeECCCCCEECcCCCCC
Confidence            34654  8999999999999999984  55554

...

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.55  E-value=7.1e-05  Score=38.88  Aligned_cols=21  Identities=38%  Similarity=1.016  Sum_probs=18.0

Q ss_pred             CeeeecCCCCc--CCCCCcCCCC
Q psy5750         235 TYQCQCKRGFS--GDGFNCEEGK  255 (286)
Q Consensus       235 ~y~C~C~~Gy~--gdg~~C~~~~  255 (286)
                      ||.|+|++||+  .++++|++++
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDID   23 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCC
Confidence            69999999999  6888997664

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.48  E-value=0.0002  Score=41.07  Aligned_cols=29  Identities=48%  Similarity=1.259  Sum_probs=24.8

Q ss_pred             CCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         221 PICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       221 ~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      ..|.++ +|++..++|.|.|++||.|+ ..|
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~-~~C   34 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTGD-KRC   34 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCccC-Ccc
Confidence            358888 99999999999999999985 355

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.42  E-value=0.00023  Score=41.32  Aligned_cols=35  Identities=20%  Similarity=0.481  Sum_probs=29.8

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCCCeEecCCCcccccc
Q psy5750          68 DDPCKN-FFCVANSSCIVEDDKPTCICNRGFQQLYS  102 (286)
Q Consensus        68 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~g~~~~~c  102 (286)
                      +++|.. .+|.+++.|++..+.|.|.|++||.|..|
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C   37 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC   37 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence            567877 78988899999999999999999987543

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.86  E-value=0.0017  Score=36.91  Aligned_cols=28  Identities=18%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CCCCCCCCeeeeCCCCCeEecCCCcccc
Q psy5750          73 NFFCVANSSCIVEDDKPTCICNRGFQQL  100 (286)
Q Consensus        73 ~~~C~~~~~C~~~~g~~~C~C~~g~~~~  100 (286)
                      ..+|.+++.|++..+.|.|.|+.||.+.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            4688888999999999999999999865

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=96.81  E-value=0.0006  Score=54.06  Aligned_cols=120  Identities=28%  Similarity=0.655  Sum_probs=69.2

Q ss_pred             CCCCCCeeecCCCCeeEeCCCCccc-CCCceecccCCCCCCCCCCCC---CCCCCCCCCCccccCC-----CCceeeCCC
Q psy5750         124 LCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCES---DPRACNPPHSTCTNLT-----DYRTCNCDP  194 (286)
Q Consensus       124 ~C~~~~~C~~~~g~~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~---~~~~C~~~~~~C~~~~-----g~~~C~C~~  194 (286)
                      .|.+ +..+...+.|.|.|.+||.. +..+|+.        ..+|..   ...+| ..-++|++..     ..|.|.|.+
T Consensus         7 ~CKN-G~LiQMSNHfEC~Cnegfvl~~EntCE~--------kv~C~~~e~~~K~C-gdya~C~~~~~~~~~~~~~C~C~~   76 (197)
T PF06247_consen    7 ICKN-GYLIQMSNHFECKCNEGFVLKNENTCEE--------KVECDKLENVNKPC-GDYAKCINQANKGEERAYKCDCIN   76 (197)
T ss_dssp             --BT-EEEEEESSEEEEEESTTEEEEETTEEEE------------SG-GGTTSEE-ETTEEEEE-SSTTSSTSEEEEE-T
T ss_pred             cccC-CEEEEccCceEEEcCCCcEEcccccccc--------ceecCcccccCccc-cchhhhhcCCCcccceeEEEeccc
Confidence            4543 56777788999999999983 4467877        556643   12457 5667887643     589999999


Q ss_pred             CCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeC---CCCeeeecCCCCcCCCCCcCCCCeeecccccccccce
Q psy5750         195 GYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR---PGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYL  269 (286)
Q Consensus       195 G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~---~g~y~C~C~~Gy~gdg~~C~~~~~c~~~~~~~c~~~~  269 (286)
                      ||+....       .|. .++|...  .|. .|.|+-.   +....|.|.-|+..+     +...|...|.+.|....
T Consensus        77 gY~~~~~-------vCv-p~~C~~~--~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~-----dn~kCtk~G~T~C~LKC  138 (197)
T PF06247_consen   77 GYILKQG-------VCV-PNKCNNK--DCG-SGKCILDPDNPNNPTCSCNIGKVPD-----DNKKCTKTGETKCSLKC  138 (197)
T ss_dssp             TEEESSS-------SEE-EGGGSS-----T-TEEEEEEEGGGSEEEEEE-TEEETT-----TTTESEEEE--------
T ss_pred             CceeeCC-------eEc-hhhcCce--ecC-CCeEEecCCCCCCceeEeeeceEec-----cCCcccCCCccceeeec
Confidence            9988744       564 3567653  487 6789743   345699999999932     23344555566555543

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.79  E-value=0.002  Score=36.77  Aligned_cols=28  Identities=29%  Similarity=0.682  Sum_probs=24.3

Q ss_pred             CCC-CCCCCCCeeeeCCCCCeEecCCCccc
Q psy5750          71 CKN-FFCVANSSCIVEDDKPTCICNRGFQQ   99 (286)
Q Consensus        71 C~~-~~C~~~~~C~~~~g~~~C~C~~g~~~   99 (286)
                      |.. .+|.++ .|++..++|.|.|++||.+
T Consensus         2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        2 CASGGPCSNG-TCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCcCCCCCC-EEECCCCCeEeECCCCCcc
Confidence            445 588888 9999999999999999986

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.57  E-value=0.0024  Score=53.47  Aligned_cols=39  Identities=31%  Similarity=0.863  Sum_probs=33.6

Q ss_pred             cCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC
Q psy5750         206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG  246 (286)
Q Consensus       206 ~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g  246 (286)
                      ....|.++++|...++.|..  .|.|+.|+|.|.|++||..
T Consensus       180 ~~~~C~~~~~C~~~~~~c~~--~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         180 QGKICVVPDLCATLSHVCQQ--VCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             ccccCcCchhhcCCCCCccc--eEEcCCCCEEeECCCCccC
Confidence            34478899999988888874  8999999999999999975

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.25  E-value=0.0077  Score=33.76  Aligned_cols=24  Identities=29%  Similarity=0.985  Sum_probs=20.8

Q ss_pred             CCCCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         222 ICNNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       222 ~C~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                      .|.++++|++.  ..+|+|.+||.|+
T Consensus         7 ~C~~~G~C~~~--~g~C~C~~g~~G~   30 (32)
T PF07974_consen    7 ICSGHGTCVSP--CGRCVCDSGYTGP   30 (32)
T ss_pred             ccCCCCEEeCC--CCEEECCCCCcCC
Confidence            59999999866  4599999999997

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG0994|consensus

Probab=96.06  E-value=0.02  Score=57.04  Aligned_cols=137  Identities=25%  Similarity=0.549  Sum_probs=69.1

Q ss_pred             eecCCCCeeE-eCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCC--------CCccc--cCCCCceeeCCCCCCCC
Q psy5750         131 CFNEIGSYSC-QCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPP--------HSTCT--NLTDYRTCNCDPGYQKD  199 (286)
Q Consensus       131 C~~~~g~~~C-~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~--------~~~C~--~~~g~~~C~C~~G~~g~  199 (286)
                      |.+...++.| +|..||.|+...=..         ..|..  -+| +.        ...|.  +......|.|.+||.|.
T Consensus       878 CqD~T~G~~CdrCl~GyyGdP~lg~g---------~~CrP--CpC-P~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~  945 (1758)
T KOG0994|consen  878 CQDSTTGHSCDRCLDGYYGDPRLGSG---------IGCRP--CPC-PDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGS  945 (1758)
T ss_pred             ccccccccchhhhhccccCCcccCCC---------CCCCC--CCC-CCCCccchhccccccccccccceeeecccCcccc
Confidence            5556667778 699999975432211         11111  112 11        11221  12234478888998887


Q ss_pred             CCCC--------cccCCccc------cCCCcCCCCCCCCC-CC---eeeeCCCCeee-ecCCCCcCCCC--CcCCCCeee
Q psy5750         200 YLDD--------RRVAFVCT------DVDECMNYPPICNN-NA---DCINRPGTYQC-QCKRGFSGDGF--NCEEGKYCL  258 (286)
Q Consensus       200 ~~~~--------~~~~~~C~------d~deC~~~~~~C~~-~~---~C~n~~g~y~C-~C~~Gy~gdg~--~C~~~~~c~  258 (286)
                      .+..        +..+..|+      .||.=.  +..|+. .+   .|....-+-.| .|.+||.||-.  +| ..=.|.
T Consensus       946 RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d--~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~q~C-qrC~Cn 1022 (1758)
T KOG0994|consen  946 RCEICADNHFGNPSEGGTCQKCECSNNIDLYD--PGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALRQNC-QRCVCN 1022 (1758)
T ss_pred             chhhhcccccCCcccCCccccccccCCcCccC--CCccchhhchhhhhhhcccccchhhccccchhHHHHhhh-hhhecc
Confidence            6542        22344443      122111  223442 12   23322233456 69999999853  45 333455


Q ss_pred             cccccccccceeeeecccccCCccc
Q psy5750         259 VVGITLCKMYLEVVNIQEICGENSI  283 (286)
Q Consensus       259 ~~~~~~c~~~~~~~~~~~~~~~~~~  283 (286)
                      +.|. .-..+..-+.++..|.+|-|
T Consensus      1023 ~LGT-n~~~~CDr~tGQCpClpNv~ 1046 (1758)
T KOG0994|consen 1023 FLGT-NSTCHCDRFTGQCPCLPNVQ 1046 (1758)
T ss_pred             cccc-CCccccccccCcCCCCcccc
Confidence            5432 22355566777778888765

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.86  E-value=0.0077  Score=34.76  Aligned_cols=24  Identities=42%  Similarity=1.061  Sum_probs=19.3

Q ss_pred             CCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         123 DLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       123 ~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      ..|..  .|++.+++|+|.|++||.-
T Consensus         6 GgC~h--~C~~~~g~~~C~C~~Gy~L   29 (36)
T PF14670_consen    6 GGCSH--ICVNTPGSYRCSCPPGYKL   29 (36)
T ss_dssp             GGSSS--EEEEETTSEEEE-STTEEE
T ss_pred             CCcCC--CCccCCCceEeECCCCCEE
Confidence            44654  8999999999999999984

...

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=95.83  E-value=0.0045  Score=27.20  Aligned_cols=11  Identities=45%  Similarity=1.265  Sum_probs=9.0

Q ss_pred             eeecCCCCcCC
Q psy5750         237 QCQCKRGFSGD  247 (286)
Q Consensus       237 ~C~C~~Gy~gd  247 (286)
                      .|+|++||+|+
T Consensus         1 ~C~C~~G~~G~   11 (13)
T PF12661_consen    1 TCQCPPGWTGP   11 (13)
T ss_dssp             EEEE-TTEETT
T ss_pred             CccCcCCCcCC
Confidence            58999999997

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.71  E-value=0.0041  Score=35.74  Aligned_cols=30  Identities=33%  Similarity=0.817  Sum_probs=22.4

Q ss_pred             CCCCCCeeeeCC-CCeeeecCCCCcCCCCCc
Q psy5750         222 ICNNNADCINRP-GTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       222 ~C~~~~~C~n~~-g~y~C~C~~Gy~gdg~~C  251 (286)
                      .|..++.|++.. |++.|.|..||+.++..|
T Consensus         6 ~cP~NA~C~~~~dG~eecrCllgyk~~~~~C   36 (37)
T PF12946_consen    6 KCPANAGCFRYDDGSEECRCLLGYKKVGGKC   36 (37)
T ss_dssp             ---TTEEEEEETTSEEEEEE-TTEEEETTEE
T ss_pred             cCCCCcccEEcCCCCEEEEeeCCccccCCCc
Confidence            488899998775 999999999999876555

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=94.80  E-value=0.019  Score=33.04  Aligned_cols=31  Identities=39%  Similarity=0.816  Sum_probs=23.0

Q ss_pred             CCCCCCCeeecCC-CCeeEeCCCCcccCCCce
Q psy5750         123 DLCHKNAMCFNEI-GSYSCQCRPGFTGNGHQC  153 (286)
Q Consensus       123 ~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~C  153 (286)
                      ..|..++.|++.. |++.|+|..||..++..|
T Consensus         5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~~~C   36 (37)
T PF12946_consen    5 TKCPANAGCFRYDDGSEECRCLLGYKKVGGKC   36 (37)
T ss_dssp             S---TTEEEEEETTSEEEEEE-TTEEEETTEE
T ss_pred             ccCCCCcccEEcCCCCEEEEeeCCccccCCCc
Confidence            6788899999887 999999999999765655

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.44  E-value=0.056  Score=30.26  Aligned_cols=27  Identities=19%  Similarity=0.671  Sum_probs=21.5

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCcccccc
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYS  102 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c  102 (286)
                      ..|.++++|+..  ..+|.|.+||.|+.|
T Consensus         6 ~~C~~~G~C~~~--~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP--CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCC--CCEEECCCCCcCCCC
Confidence            368899999966  348999999998643

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG0994|consensus

Probab=93.55  E-value=0.61  Score=47.11  Aligned_cols=67  Identities=27%  Similarity=0.624  Sum_probs=36.0

Q ss_pred             ccccCCCCcee-eCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCC-Ceee--eCCCCeeeecCCCCcCCCCCc
Q psy5750         180 TCTNLTDYRTC-NCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN-ADCI--NRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       180 ~C~~~~g~~~C-~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~-~~C~--n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      .|.+...++.| .|..||.|+..-  ..+..|. .=+|-..|..=..+ -.|.  +......|.|.+||.|.  .|
T Consensus       877 ~CqD~T~G~~CdrCl~GyyGdP~l--g~g~~Cr-PCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~--RC  947 (1758)
T KOG0994|consen  877 DCQDSTTGHSCDRCLDGYYGDPRL--GSGIGCR-PCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGS--RC  947 (1758)
T ss_pred             cccccccccchhhhhccccCCccc--CCCCCCC-CCCCCCCCccchhccccccccccccceeeecccCcccc--ch
Confidence            35556778889 799999998331  1112221 11222222111111 1232  23345689999999987  55

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.53  E-value=0.081  Score=44.25  Aligned_cols=39  Identities=26%  Similarity=0.691  Sum_probs=33.1

Q ss_pred             CCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         108 DDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       108 ~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      .+..|.++++|....+.|..  .|.++.|+|.|.|++||+.
T Consensus       180 ~~~~C~~~~~C~~~~~~c~~--~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         180 QGKICVVPDLCATLSHVCQQ--VCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             ccccCcCchhhcCCCCCccc--eEEcCCCCEEeECCCCccC
Confidence            35678899999876677874  8999999999999999985

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG1836|consensus

Probab=92.25  E-value=0.86  Score=48.71  Aligned_cols=33  Identities=27%  Similarity=0.708  Sum_probs=23.0

Q ss_pred             CCCCCCCCCCCCCccccCC--CCceee-CCCCCCCCCCC
Q psy5750         167 CESDPRACNPPHSTCTNLT--DYRTCN-CDPGYQKDYLD  202 (286)
Q Consensus       167 C~~~~~~C~~~~~~C~~~~--g~~~C~-C~~G~~g~~~~  202 (286)
                      |..  -+| ++++.|....  ....|+ |++||+|..+.
T Consensus       777 C~~--C~C-p~~~~~~~~~~~~~~iCk~Cp~gytG~rCe  812 (1705)
T KOG1836|consen  777 CQP--CPC-PNGGACGQTPEILEVVCKNCPPGYTGLRCE  812 (1705)
T ss_pred             Ccc--CCC-CCChhhcCcCcccceecCCCCCCCcccccc
Confidence            554  466 6666676543  566887 99999998765

>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function

Probab=88.57  E-value=0.87  Score=28.37  Aligned_cols=26  Identities=35%  Similarity=0.885  Sum_probs=18.6

Q ss_pred             CCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         222 ICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       222 ~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      .|..++.|++.    .|+|++||.-.+..|
T Consensus        27 qC~~~s~C~~g----~C~C~~g~~~~~~~C   52 (52)
T PF01683_consen   27 QCIGGSVCVNG----RCQCPPGYVEVGGRC   52 (52)
T ss_pred             CCCCcCEEcCC----EeECCCCCEecCCCC
Confidence            35567788643    899999998765554

It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO

>smart00051 DSL delta serrate ligand

Probab=87.92  E-value=1.1  Score=29.44  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             CceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       187 ~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                      .++-.|.++|.|..+         .  ..|... +.+..+..|.. .|  .|.|.+||+|.
T Consensus        16 ~~rv~C~~~~yG~~C---------~--~~C~~~-~d~~~~~~Cd~-~G--~~~C~~Gw~G~   61 (63)
T smart00051       16 QIRVTCDENYYGEGC---------N--KFCRPR-DDFFGHYTCDE-NG--NKGCLEGWMGP   61 (63)
T ss_pred             EEEeeCCCCCcCCcc---------C--CEeCcC-ccccCCccCCc-CC--CEecCCCCcCC
Confidence            345579999999844         2  223221 12445566742 33  57899999987

>KOG1836|consensus

Probab=86.88  E-value=1.2  Score=47.58  Aligned_cols=60  Identities=30%  Similarity=0.572  Sum_probs=35.7

Q ss_pred             cccCCCCcee-eCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeC--CCCeeee-cCCCCcCCCCCcC
Q psy5750         181 CTNLTDYRTC-NCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR--PGTYQCQ-CKRGFSGDGFNCE  252 (286)
Q Consensus       181 C~~~~g~~~C-~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~--~g~y~C~-C~~Gy~gdg~~C~  252 (286)
                      |+....+.+| .|..||.+....       =..-| |..=+  |..++.|...  .....|. |++||+|.  +|+
T Consensus       749 C~~~t~G~~C~~C~~GfYg~~~~-------~~~~d-C~~C~--Cp~~~~~~~~~~~~~~iCk~Cp~gytG~--rCe  812 (1705)
T KOG1836|consen  749 CKHNTFGGQCAQCVDGFYGLPDL-------GTSGD-CQPCP--CPNGGACGQTPEILEVVCKNCPPGYTGL--RCE  812 (1705)
T ss_pred             cccCCCCCchhhhcCCCCCcccc-------CCCCC-CccCC--CCCChhhcCcCcccceecCCCCCCCccc--ccc
Confidence            3333334455 688888876331       01112 54332  6666677654  4567898 99999987  664

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=86.58  E-value=0.64  Score=34.67  Aligned_cols=32  Identities=28%  Similarity=0.762  Sum_probs=25.3

Q ss_pred             CCCCCCCeeeeC--CCCeeeecCCCCcCCCCCcCCCC
Q psy5750         221 PICNNNADCINR--PGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       221 ~~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      +-|-++ +|.-.  ...+.|.|..||.|.  +||..+
T Consensus        51 ~YClHG-~C~yI~dl~~~~CrC~~GYtGe--RCEh~d   84 (139)
T PHA03099         51 GYCLHG-DCIHARDIDGMYCRCSHGYTGI--RCQHVV   84 (139)
T ss_pred             CEeECC-EEEeeccCCCceeECCCCcccc--ccccee
Confidence            457765 89755  478999999999999  997665

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=85.15  E-value=0.47  Score=34.28  Aligned_cols=33  Identities=24%  Similarity=0.700  Sum_probs=25.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCC-----CCeeeecCCCCc
Q psy5750         213 VDECMNYPPICNNNADCINRP-----GTYQCQCKRGFS  245 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~-----g~y~C~C~~Gy~  245 (286)
                      .++|...++.|..|+.|++.-     .=|.|.|.+.+.
T Consensus         5 ~~aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~   42 (103)
T PF12955_consen    5 NDACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTVV   42 (103)
T ss_pred             HHHHHHhccCCCCCceEeeccCCCccceEEEEeecccc
Confidence            466777777899999999872     348999998544

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		1e-09
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		3e-09
2bo2_A	143	Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune Syst		7e-07
2w86_A	147	Crystal Structure Of Fibrillin-1 Domains Cbegf9hyb2		2e-05

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           D++EC+ G + C     C N +GS+ CQC  G+TG      EI V +   ++PC++D   
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNEC-VSNPCQND--- 56
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
                +TC +      C C PGY+  + +         + DEC + P  C +N  C+++ 
Sbjct: 57  -----ATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLDKI 101
Query: 234 GTYQCQCKRGFSG 246
             +QC+C  GF+G
Sbjct: 102 NEFQCECPTGFTG 114

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           D++EC+ G + C     C N +GS+ CQC  G+TG      EI V +   ++PC++D   
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNEC-VSNPCQND--- 54
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
                +TC +      C C PGY+  + +         + DEC + P  C +N  C+++ 
Sbjct: 55  -----ATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLDKI 99
Query: 234 GTYQCQCKRGFSG 246
             +QC+C  GF+G
Sbjct: 100 NEFQCECPTGFTG 112

>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System Molecule, In Complex With Calcium. Length = 143

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 91  CICNRGFQQLYSEDRLQDDF--GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF 146
           C+C+ G++ +      +++    C D++EC++G   C  + +CFN +GSYSC+CRPG+
Sbjct: 70  CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127

>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains Cbegf9hyb2cbegf10, Calcium Saturated Form Length = 147

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQ--CTEI---TVPQTGPTSPCE 168
           DI+EC +   +   N +C N  GS+ C+C    T +  +  C E    T  QT     CE
Sbjct: 3   DIDECESSPCI---NGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 169 SDPRACNPPHSTCTNL-----TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPIC 223
            +          C++L     +    C  DP   K Y   R     C D+DEC  +P +C
Sbjct: 60  ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGY--SRIKGTQCEDIDECEVFPGVC 117
Query: 224 NNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL 258
            N   C+N  G+++CQC  G + D      G+ CL
Sbjct: 118 KNGL-CVNTRGSFKCQCPSGMTLDA----TGRICL 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	5e-22
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-16
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	7e-10
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-08
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-04
2bou_A	143	EGF-like module containing mucin-like hormone rece	1e-21
2bou_A	143	EGF-like module containing mucin-like hormone rece	7e-14
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-18
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-10
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	4e-17
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-09
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	6e-17
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-10
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	6e-09
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-14
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	6e-07
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	7e-04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	9e-13
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-10
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-06
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	1e-12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-06
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	2e-12
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	2e-06
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	4e-04
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-12
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-11
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	2e-08
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	4e-06
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-11
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	5e-10
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	8e-09
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	9e-10
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-09
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-08
1aut_L	114	Activated protein C; serine proteinase, plasma cal	4e-06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-05
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-08
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-07
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-07
3v65_B	386	Low-density lipoprotein receptor-related protein;	9e-05
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	5e-07
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	1e-05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-05
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-06
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-05
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	1e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-04
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	4e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	7e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-04
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	1e-04
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	4e-04
1ob1_C	99	Major merozoite surface protein; immune system, im	6e-04
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	6e-04
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	7e-04

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 89.0 bits (221), Expect = 5e-22
 Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 29/165 (17%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
            C C   F+            GC D    N     C+ +     + G  +C    G   +
Sbjct: 25  ICDCPPDFE------LNPTRVGCVDTRSGN-----CYLDIRPRGDNGDTACSNEIGVGVS 73

Query: 150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFV 209
              C                 P    P             C    G++ +      +  +
Sbjct: 74  KASCCCSLG-------KAWGTPCEMCP---AVNTSEYKILCPGGEGFRPNP-----ITVI 118

Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
             D+DEC   P +C     CIN  G++QC+C  G+  + D   C+
Sbjct: 119 LEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 27/142 (19%), Positives = 36/142 (25%), Gaps = 26/142 (18%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           D+NEC   T        C N  GSY C C P F  N  +   +             D R+
Sbjct: 2   DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCV-------------DTRS 46

Query: 174 CN-PPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR 232
            N               C+ + G              C  + +    P  C         
Sbjct: 47  GNCYLDIRPRGDNGDTACSNEIGVGVS--KASC----CCSLGKAWGTP--CEMCPAVNTS 98

Query: 233 PGTYQCQCKRGF--SGDGFNCE 252
                C    GF  +      E
Sbjct: 99  EYKILCPGGEGFRPNPITVILE 120

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 7/90 (7%)

Query: 65  TVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL 124
             +        C    +    + K  C    GF+               DI+EC     L
Sbjct: 78  CCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFR------PNPITVILEDIDECQELPGL 131

Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
           C     C N  GS+ C+C  G+  N     
Sbjct: 132 CQ-GGKCINTFGSFQCRCPTGYYLNEDTRV 160

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 19/126 (15%), Positives = 28/126 (22%), Gaps = 21/126 (16%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C  +     ++    C    G         +     C  + +       C          
Sbjct: 49  CYLDIRPRGDNGDTACSNEIGVG-------VSKASCCCSLGKAWGTP--CEMCPAVNTSE 99

Query: 136 GSYSCQCRPGFTGN--GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCD 193
               C    GF  N       +I          C+  P  C      C N      C C 
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDE--------CQELPGLC--QGGKCINTFGSFQCRCP 149

Query: 194 PGYQKD 199
            GY  +
Sbjct: 150 TGYYLN 155

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           TDV+EC++  P    + +C+N PG+Y C C   F  +     
Sbjct: 1   TDVNECLD--PTTCISGNCVNTPGSYICDCPPDFELNPTRVG 40

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN-------GHQCTEITVPQTGPTSP 166
           D   C      C +++ C   + + +C+C PGF+            C +I        + 
Sbjct: 1   DSRGCA---RWCPQDSSC---VNATACRCNPGFSSFSEIITTPMETCDDI--------NE 46

Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVA---FVCTDVDECMNYPPIC 223
           C +  +      S C N      C C PGY+               C DVDEC +    C
Sbjct: 47  CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQC 106

Query: 224 NNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           +++  C N  G+Y C+C+ G+        
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHGIPN 135

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQ--DDFGCFDINECNAGTDLCHKNAMCFN 133
           C   S C   +    C+C+ G++ +      +   +  C D++EC++G   C  + +CFN
Sbjct: 55  CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114

Query: 134 EIGSYSCQCRPGFTGNGHQCT 154
            +GSYSC+CRPG+        
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPN 135

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 78.0 bits (193), Expect = 3e-18
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 24/142 (16%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
             D++EC+ G + C     C N +GS+ CQC  G+TG   +C           + C S+P
Sbjct: 2   AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP--RCEI-------DVNECVSNP 52

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
             C    +TC +      C C PGY+  + +         + DEC + P  C +N  C++
Sbjct: 53  --CQ-NDATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLD 99

Query: 232 RPGTYQCQCKRGFSGDGFNCEE 253
           +   +QC+C  GF+G    C+ 
Sbjct: 100 KINEFQCECPTGFTGH--LCQV 119

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 38/163 (23%)

Query: 65  TVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL 124
           ++  +PC++        CI       C C +G+     E          D+NEC   ++ 
Sbjct: 9   SLGANPCEH-----AGKCINTLGSFECQCLQGYTGPRCEI---------DVNECV--SNP 52

Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
           C  +A C ++IG + C C PG+ G    C          T  C S P  C   +  C + 
Sbjct: 53  CQNDATCLDQIGEFQCICMPGYEG--VHCEV-------NTDECASSP--CLH-NGRCLDK 100

Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNNN 226
            +   C C  G+             C  D+   ++   +  N+
Sbjct: 101 INEFQCECPTGFTGHL---------CQVDLHHILDAQKMVWNH 134

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 37/154 (24%), Positives = 53/154 (34%), Gaps = 26/154 (16%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT-----EITVPQTGPTSPCE 168
           DI+EC +       N +C N  GS+ C+C    T +  +       + T  QT     CE
Sbjct: 3   DIDECESS---PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59

Query: 169 SDPRAC---------NPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNY 219
            +                              C  GY             C D+DEC  +
Sbjct: 60  ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS---RIKGTQ---CEDIDECEVF 113

Query: 220 PPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
           P +C N   C+N  G+++CQC  G      G  C
Sbjct: 114 PGVCKN-GLCVNTRGSFKCQCPSGMTLDATGRIC 146

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 61  THSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNA 120
            + +T+    C +      S C     +   IC +G+              C DI+EC  
Sbjct: 62  INGATLKSQCCSSLGAAWGSPC--TLCQVDPICGKGYS-------RIKGTQCEDIDECEV 112

Query: 121 GTDLCHKNAMCFNEIGSYSCQCRPGFTG--NGHQC 153
              +C  N +C N  GS+ CQC  G T    G  C
Sbjct: 113 FPGVCK-NGLCVNTRGSFKCQCPSGMTLDATGRIC 146

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 79.7 bits (196), Expect = 6e-17
 Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 25/153 (16%)

Query: 114 DINECNAGTDLCHKNAMCFN-EIGSYSCQ-CRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
           D + C +    C   A C +   GS+SC  C  GF GNG  C ++          C   P
Sbjct: 2   DPDGCLSNP--CFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL--------DECALVP 51

Query: 172 RACNP--PHSTCTNLTDYRTC-NCDPGYQKDYLDDRRVAF------VCTDVDECMNYPPI 222
             C        C N      C  C P Y+ +      +        VC   + C +    
Sbjct: 52  DICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111

Query: 223 CNNNADCINRP----GTYQCQCKRGFSGDGFNC 251
           C+ +A+CI         Y+C+C+ G++GDG  C
Sbjct: 112 CHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC 144

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 45/204 (22%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 69  DPCKNFFCVANSSCI-VEDDKPTCI-CNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH 126
           D C +  C   + C    D   +C  C  GF          +   C D++EC    D+C 
Sbjct: 4   DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLG--------NGTHCEDLDECALVPDICF 55

Query: 127 KNA---MCFNEIGSYSC-QCRPGFTGNGHQCTEITVPQTG-----PTSPCESDPRACNPP 177
             +    C N    + C  C P + GN      +   +T      P +PC+     C   
Sbjct: 56  STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC-HK 114

Query: 178 HSTCTNLTDYR----TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
           H+ C  L  +      C C  GY  D L         +D+D   N   +C  NA      
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGLICGE----DSDLDGWPNLNLVCATNATYHCIK 170

Query: 234 GTYQCQCKRGFSGDGFNCEEGKYC 257
                        D      G  C
Sbjct: 171 DNCPHLPN-SGQEDFDKDGIGDAC 193

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 23/194 (11%)

Query: 65  TVNDDPCKNFFCVANSSCIVEDDKPTCI-CNRGFQ-----QLYSEDRLQDDFGCFDINEC 118
            +  D C  F       C+       C+ C   ++      +  E    +   C   N C
Sbjct: 48  ALVPDIC--FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPC 105

Query: 119 NAGTDLCHKNAMCFNE----IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRAC 174
              T  CHK+A C          Y C+C+ G+ G+G  C E +        P  +   A 
Sbjct: 106 KDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDS---DLDGWPNLNLVCAT 162

Query: 175 NPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPG 234
           N       +       +     Q+D+  D     +    D+  +   + +   +C     
Sbjct: 163 NA----TYHCIKDNCPHLPNSGQEDFDKD----GIGDACDDDDDNDGVTDEKDNCQLLFN 214

Query: 235 TYQCQCKRGFSGDG 248
             Q    +   GD 
Sbjct: 215 PRQADYDKDEVGDR 228

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 26/147 (17%), Positives = 38/147 (25%), Gaps = 23/147 (15%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
             D ++C   T  C     C + +G Y+C C  GF G   +              C  D 
Sbjct: 39  YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR--------KLCSLDN 88

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
             C+     C    +   C+C  GY                      YP  C        
Sbjct: 89  GDCD---QFCHEEQNSVVCSCARGYTLADNG--------KACIPTGPYP--CGKQTLERR 135

Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKYCL 258
           +    Q     G + D    +      
Sbjct: 136 KRSVAQATSSSGEAPDSITWKPYDAAD 162

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 29/181 (16%), Positives = 42/181 (23%), Gaps = 35/181 (19%)

Query: 66  VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
            + D C+   C     C     + TC C  GF+    E             +  +  D  
Sbjct: 40  KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE---------LFTRKLCS-LDNG 89

Query: 126 HKNAMCFNEIGSYSCQCRPGFTGN--GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
             +  C  E  S  C C  G+T    G  C            PC           +    
Sbjct: 90  DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG------PYPCGKQ--------TLERR 135

Query: 184 LTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG 243
                      G   D +            D     P    N  D ++   T   +    
Sbjct: 136 KRSVAQATSSSGEAPDSIT-------WKPYDAADLDP--TENPFDLLDFNQTQPERGDNN 186

Query: 244 F 244
            
Sbjct: 187 L 187

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 34/139 (24%), Positives = 44/139 (31%), Gaps = 27/139 (19%)

Query: 114 DINECNAGTDLCHKNAMCFNE-IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
            ++ C            C      SY C C  GF    H+                    
Sbjct: 3   PVDPCFRANC----EYQCQPLDQTSYLCVCAEGFAPIPHEPH------------RCQMFC 46

Query: 173 ACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR 232
                 + C   T    C C  GY    LDD  +   CTD+DEC N    C+    C N 
Sbjct: 47  NQTACPADCDPNTQAS-CECPEGYI---LDDGFI---CTDIDECEN-GGFCS--GVCHNL 96

Query: 233 PGTYQCQCKRGFSGDGFNC 251
           PGT++C C    +  G   
Sbjct: 97  PGTFECICGPDSALAGQIG 115

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
           +C C  G+        L D F C DI+EC  G   C  + +C N  G++ C C P     
Sbjct: 62  SCECPEGYI-------LDDGFICTDIDECENG-GFC--SGVCHNLPGTFECICGPDSALA 111

Query: 150 GHQCT 154
           G   T
Sbjct: 112 GQIGT 116

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 25/117 (21%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT-G 148
            C+C  GF  +       +   C       A    C  N          SC+C  G+   
Sbjct: 25  LCVCAEGFAPI-----PHEPHRCQMFCNQTACPADCDPN-------TQASCECPEGYILD 72

Query: 149 NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRR 205
           +G  CT+I   + G                  C NL     C C P           
Sbjct: 73  DGFICTDIDECENG------------GFCSGVCHNLPGTFECICGPDSALAGQIGTD 117

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
           C   P  C      C N      C CD GY+  ++  +     C D+DEC   P +C   
Sbjct: 6   CRISPDLC--GRGQCVNTPGDFECKCDEGYESGFMMMKN----CMDIDECQRDPLLCRG- 58

Query: 227 ADCINRPGTYQCQCKRGF--SGDGFNC 251
             C N  G+Y+C+C  G   S +   C
Sbjct: 59  GVCHNTEGSYRCECPPGHQLSPNISAC 85

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT-- 147
            C C+ G++  +          C DI+EC     LC    +C N  GSY C+C PG    
Sbjct: 26  ECKCDEGYESGFM-----MMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLS 79

Query: 148 GNGHQC 153
            N   C
Sbjct: 80  PNISAC 85

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFN 250
           TD+DEC   P +C     C+N PG ++C+C  G+      
Sbjct: 1   TDIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMM 39

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 24/128 (18%)

Query: 127 KNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTD 186
           K+    + +  Y           G   T            C  +   C+     C +L  
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGAMGTN----------ECLDNNGGCS---YVCNDLKI 48

Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF-- 244
              C C  G+Q      RR    C D+DEC + P  C  +  C+N  G Y+CQC+ GF  
Sbjct: 49  GYECLCPDGFQLV--AQRR----CEDIDECQD-PDTC--SQLCVNLEGGYKCQCEEGFQL 99

Query: 245 SGDGFNCE 252
                 C+
Sbjct: 100 DPHTKACK 107

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 89  PTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT- 147
             C+C  GFQ       L     C DI+EC    D C    +C N  G Y CQC  GF  
Sbjct: 50  YECLCPDGFQ-------LVAQRRCEDIDEC-QDPDTCS--QLCVNLEGGYKCQCEEGFQL 99

Query: 148 -GNGHQC 153
             +   C
Sbjct: 100 DPHTKAC 106

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 65.2 bits (158), Expect = 2e-12
 Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 16/145 (11%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQT--GPTSPCESDP 171
               C      C  +A C +    + C+C   +TGNG QC     PQ   G         
Sbjct: 4   AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
            +  P     T+L  Y             ++  R     + + E + Y          I 
Sbjct: 64  SSQVPVVFENTDLHSYVV-----------MNHGRSYTAISTIPETVGYSL---LPLAPIG 109

Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKY 256
               +    ++    +GF+   G++
Sbjct: 110 GIIGWMFAVEQDGFKNGFSITGGEF 134

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLC 265
               C N    C+ +A+C +    + C+C   ++G+G  C        V   + 
Sbjct: 4   AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVK 57

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 1   GVFNYSAELIF-STGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQE 59
           G F   AE+ F     +L ++++F G D +  L +   ++G  P I  G S  +E   + 
Sbjct: 132 GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTEL 191

Query: 60  FTHSS 64
           + +SS
Sbjct: 192 YHYSS 196

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 27/141 (19%)

Query: 125 CHKNAMCFNEI--GSYSCQCRPGFTGNGHQCTE-----ITVPQTGPTSPCESDP----RA 173
           C    +C   +  GS+SC+C  GFT     C+          +     PC  +P      
Sbjct: 8   CENGGICLPGLADGSFSCECPDGFTDP--NCSSVVEVASDEEEPTSAGPCTPNPCHNGGT 65

Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNNNADCINR 232
           C    +   +      C C  G+   +         C  +++EC   P  C N   C + 
Sbjct: 66  CEISEAYRGDTFIGYVCKCPRGFNGIH---------CQHNINECEVEP--CKNGGICTDL 114

Query: 233 PGTYQCQCKRGFSGDGFNCEE 253
              Y C+C   F G   NC+ 
Sbjct: 115 VANYSCECPGEFMGR--NCQY 133

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 12/177 (6%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
              N   +   +   C+CN G   L      + +    +      G            ++
Sbjct: 12  ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQV 71

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
             Y C C  G+T     C                +            +      C+C  G
Sbjct: 72  NMYXCGCIEGYTLXEDTCV--------LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
              +  D+      CT   E         +N  C N  G Y CQC  GF+ D     
Sbjct: 124 XVPNPEDEXX----CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNV 176

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 17/137 (12%), Positives = 28/137 (20%), Gaps = 7/137 (5%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           +        D    N         + C C  G         E        T         
Sbjct: 1   EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60

Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
                +      +   C C  GY               DV +  N         + ++  
Sbjct: 61  -QCIENPDPAQVNMYXCGCIEGYTLXEDT------CVLDVCQYXNCGESGECIVEYLSEI 113

Query: 234 GTYQCQCKRGFSGDGFN 250
            +  C C  G   +  +
Sbjct: 114 QSAGCSCAIGXVPNPED 130

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 26/153 (16%), Positives = 40/153 (26%), Gaps = 18/153 (11%)

Query: 67  NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH 126
               C  F     +    + +   C C  G+        L +D    D+ +     +   
Sbjct: 52  LGXACGEFGQCIENPDPAQVNMYXCGCIEGYT-------LXEDTCVLDVCQYXNCGESGE 104

Query: 127 KNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTD 186
                 +EI S  C C  G   N       T                CN  +  C N+  
Sbjct: 105 CIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL------XCNTDNEVCXNVEG 158

Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNY 219
              C C  G+  D         VC       ++
Sbjct: 159 VYXCQCMEGFTFD-----XEXNVCLGPHHHHHH 186

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
             D++EC        K+  C N  GSY C+C  G+   G++C +           C    
Sbjct: 2   AVDMDECKEPD--VCKHGQCINTDGSYRCECPFGYILAGNECVDT--------DECSVGN 51

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKD 199
                 + TC N+     C C+ G++  
Sbjct: 52  PCG---NGTCKNVIGGFECTCEEGFEPG 76

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 177 PHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTY 236
            H  C N      C C  GY             C D DEC    P  N    C N  G +
Sbjct: 15  KHGQCINTDGSYRCECPFGYILA-------GNECVDTDECSVGNPCGN--GTCKNVIGGF 65

Query: 237 QCQCKRGFSG-DGFNCE 252
           +C C+ GF       CE
Sbjct: 66  ECTCEEGFEPGPMMTCE 82

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 10/61 (16%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
            C C  G+              C D +EC+ G    +    C N IG + C C  GF   
Sbjct: 27  RCECPFGYIL--------AGNECVDTDECSVGNPCGN--GTCKNVIGGFECTCEEGFEPG 76

Query: 150 G 150
            
Sbjct: 77  P 77

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
             D+DEC       +    CIN  G+Y+C+C  G+   G  C 
Sbjct: 2   AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNECV 42

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 23/131 (17%)

Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
           C +    + E                ++  +           CE+ P   N     C + 
Sbjct: 12  CMEETCSYEEAREVFEDSDKTNEF-WNKYKDG--------DQCETSP-CQN--QGKCKDG 59

Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
               TC C  G++    +            +  +     + +  C     +  C C RG+
Sbjct: 60  LGEYTCTCLEGFEGKNCE--------LFTRKLCSLDN-GDCDQFCHEEQNSVVCSCARGY 110

Query: 245 SG--DGFNCEE 253
           +   +G  C  
Sbjct: 111 TLADNGKACIP 121

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 32/154 (20%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C+  +    E  +     ++  +               D ++C   T  C     C + +
Sbjct: 12  CMEETCSYEEAREVFEDSDKTNEFWNKYK---------DGDQCE--TSPCQNQGKCKDGL 60

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
           G Y+C C  GF   G  C      +      C  D   C+     C    +   C+C  G
Sbjct: 61  GEYTCTCLEGFE--GKNC------ELFTRKLCSLDNGDCD---QFCHEEQNSVVCSCARG 109

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC 229
           Y                      YP  C      
Sbjct: 110 YTLADNG--------KACIPTGPYP--CGKQTLE 133

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 20/121 (16%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
           C  +   +    LC  +  C + IGS+SC CR G+ G   Q  E++         C  D 
Sbjct: 9   CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ-REVSFLN------CSLDN 61

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
             C      C     +R C+C PGY+    DD             + +P  C      + 
Sbjct: 62  GGC---THYCLEEVGWRRCSCAPGYKLG--DDLL------QCHPAVKFP--CGRPWKRME 108

Query: 232 R 232
           +
Sbjct: 109 K 109

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 10/78 (12%)

Query: 178 HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQ 237
           H TC +     +C+C  G++  +               C            C+   G  +
Sbjct: 25  HGTCIDGIGSFSCDCRSGWEGRFCQ------REVSFLNCSLDN--GGCTHYCLEEVGWRR 76

Query: 238 CQCKRGFSG--DGFNCEE 253
           C C  G+    D   C  
Sbjct: 77  CSCAPGYKLGDDLLQCHP 94

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 64  STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTD 123
             +  +      C  + +CI      +C C  G++  + +          +++  N   D
Sbjct: 10  LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ---------REVSFLNCSLD 60

Query: 124 LCHKNAMCFNEIGSYSCQCRPGFTG--NGHQCTEI 156
                  C  E+G   C C PG+    +  QC   
Sbjct: 61  NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 32/125 (25%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
             D ++C      C    +C ++I SY C C+ GF G                  CE D 
Sbjct: 45  YVDGDQCEPNP--CLNGGLCKDDINSYECWCQVGFEG----------------KNCELDA 86

Query: 172 RACNPP----HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNA 227
                         T       C+C  GY+                   + +P  C   +
Sbjct: 87  TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ--------KSCKPAVPFP--CGRVS 136

Query: 228 DCINR 232
              + 
Sbjct: 137 VSHSP 141

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 26/129 (20%)

Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPP----HSTCTNLTD 186
           C  E  S+             +  E T  +T        D   C P        C +  +
Sbjct: 18  CIEEKCSFEEAR---------EVFENT-EKTNEFWKQYVDGDQCEPNPCLNGGLCKDDIN 67

Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG 246
              C C  G++    +         D    +                    C C  G+  
Sbjct: 68  SYECWCQVGFEGKNCE--------LDATCNIKNG--RCKQFCKTGADSKVLCSCTTGYRL 117

Query: 247 --DGFNCEE 253
             D  +C+ 
Sbjct: 118 APDQKSCKP 126

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 209 VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYC 257
              D D+C   P  C N   C +   +Y+C C+ GF G   NCE    C
Sbjct: 44  QYVDGDQCEPNP--CLNGGLCKDDINSYECWCQVGFEGK--NCELDATC 88

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 25/146 (17%), Positives = 37/146 (25%), Gaps = 18/146 (12%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTEITVPQTGPTSPCESDP 171
               CN     C     C    G+  C C  G+    +G  C ++          C ++ 
Sbjct: 2   GEENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVN--------EC-AEE 50

Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
             C+     CTN      C C+ GY+     DRR           +    I         
Sbjct: 51  GYCSQ---GCTNSEGAFQCWCEAGYELR--PDRRSCKALGPEPVLLFANRIDIRQVLPHR 105

Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKYC 257
              T             F+       
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVF 131

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 14/140 (10%)

Query: 69  DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
           + C          C +      C C+ G++        +D   C D+NEC A    C + 
Sbjct: 4   ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRL------TEDGRTCQDVNEC-AEEGYCSQ- 55

Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPH-----STCTN 183
             C N  G++ C C  G+     + +   +                  PH         N
Sbjct: 56  -GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114

Query: 184 LTDYRTCNCDPGYQKDYLDD 203
           L +    +     +  +  D
Sbjct: 115 LENAIALDFHHRRELVFWSD 134

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 64/143 (44%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           D++EC+    +C   A+C N  G + C+C  G+  N                        
Sbjct: 2   DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNL----------------------- 37

Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
                         ++C                     D+DEC      C     C+N P
Sbjct: 38  ------------KSKSC--------------------EDIDECSENM--CAQL--CVNYP 61

Query: 234 GTYQCQC--KRGF--SGDGFNCE 252
           G Y C C  K+GF  + D  +CE
Sbjct: 62  GGYTCYCDGKKGFKLAQDQKSCE 84

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 14/71 (19%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQC--RPGFT 147
            C C  G++             C DI+EC+     C    +C N  G Y+C C  + GF 
Sbjct: 26  ECECPEGYRYN------LKSKSCEDIDECSENM--CA--QLCVNYPGGYTCYCDGKKGFK 75

Query: 148 --GNGHQCTEI 156
              +   C  +
Sbjct: 76  LAQDQKSCEVV 86

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 22/119 (18%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
             D ++C   +  C     C +++ SY C C P F G  +  T                 
Sbjct: 44  YSDGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEGR-NCETHK--------DDQLICV 92

Query: 172 RACNPPHSTCTNLTD-YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC 229
                    C++ T   R+C C  GY                    + YP  C      
Sbjct: 93  NENGGCEQYCSDHTGTKRSCRCHEGYSLLADG--------VSCTPTVEYP--CGKIPIL 141

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 29/130 (22%)

Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC 190
           C  E      +            ++           C S P   N    +C +      C
Sbjct: 22  CSFEEAREIFKDAERTKLFWISYSDG--------DQCASSP-CQN--GGSCKDQLQSYIC 70

Query: 191 NCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNN---NADCINRPGT-YQCQCKRGFS 245
            C P ++            C T  D+ +       N      C +  GT   C+C  G+S
Sbjct: 71  FCLPAFEGRN---------CETHKDDQLICV--NENGGCEQYCSDHTGTKRSCRCHEGYS 119

Query: 246 G--DGFNCEE 253
              DG +C  
Sbjct: 120 LLADGVSCTP 129

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 36/140 (25%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
           +   C  G    H +           C+C+ G+ G    C +           C   P  
Sbjct: 64  NRAICRQGCSPKHGSCKL-----PGDCRCQYGWQGL--YCDK-----------CIPHPG- 104

Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR- 232
           C   H  C     +  C C+  +     D         D++ C  + P C N   C N  
Sbjct: 105 CV--HGICNE--PW-QCLCETNWGGQLCD--------KDLNYCGTHQP-CLNGGTCSNTG 150

Query: 233 PGTYQCQCKRGFSGDGFNCE 252
           P  YQC C  G+SG   NCE
Sbjct: 151 PDKYQCSCPEGYSGP--NCE 168

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D D+C + P  C N   C +   +Y+C C  GF G   NCE
Sbjct: 2   DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE 38

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
           D ++C   ++ C     C ++I SY C C  GF G 
Sbjct: 2   DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEGK 35

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
              + C   +  C  N  C + I  Y+C C PG+   G  C           +  E  P 
Sbjct: 3   KGGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGYE--GSNCE---------LAKNECHPE 49

Query: 173 ACNPPHSTCTNLTDYRTCNCDPGYQ 197
             +     C    +  TC+C  GY+
Sbjct: 50  RTDGCQHFCLPGQESYTCSCAQGYR 74

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKY 256
                C++ P  C +N  C +    Y C C  G+  +G NCE  K 
Sbjct: 3   KGGSPCISQP--CLHNGSCQDSIWGYTCTCSPGY--EGSNCELAKN 44

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 39/166 (23%), Positives = 49/166 (29%), Gaps = 21/166 (12%)

Query: 76  CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
           C+ N  C   +D   CIC  GF     E   +         E  +G + C     C    
Sbjct: 205 CMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LP 260

Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
             Y C C  G+ G   QC E   P  G   P      +CN     C        C C PG
Sbjct: 261 DPYGCSCATGWKG--LQCNEACHP--GFYGPDCKLRCSCNN-GEMCDRFQ---GCLCSPG 312

Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCK 241
           +Q            C         P I +         G +   CK
Sbjct: 313 WQGLQ---------CEREGIPRMTPKIVDLPDHIEVNSGKFNPICK 349

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 31/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%)

Query: 69  DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
           D            C  E +K   I   GF+                  +C         +
Sbjct: 393 DTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ-------VTFDCDCACQAQAEPNS 445

Query: 129 AMCFNEIGSYS---CQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLT 185
             C N  G++    C+C PG+ G+  +C            P + D  +       C+   
Sbjct: 446 HRCNNGNGTFECGVCRCGPGWLGSQCEC------SEEDYRPSQQDECSPREGQPVCSQRG 499

Query: 186 DYRT--CNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG 243
           +     C C                 C D         +C+ +  C        C C   
Sbjct: 500 ECLCGQCVCHSSDFGKITGKYC---ECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSD 552

Query: 244 FSGDGFNCEEGKYC 257
           ++G   NC      
Sbjct: 553 WTGYYCNCTTRTDT 566

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 26/145 (17%), Positives = 36/145 (24%), Gaps = 18/145 (12%)

Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACN 175
           NEC      C    +C +    Y C C  GF     +  E           C+ DP  C 
Sbjct: 1   NECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCE-------DIDECQ-DPDTC- 49

Query: 176 PPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGT 235
                C NL     C C+ G+Q D          C  V           +    +    +
Sbjct: 50  --SQLCVNLEGGYKCQCEEGFQLDPHT-----KACKAVGSIAYLFFTNRHEVRKMTLDRS 102

Query: 236 YQCQCKRGFSGDGFNCEEGKYCLVV 260
                            E     + 
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIY 127

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 69  DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
           + C +     +  C        C+C  GF       +L     C DI+EC    D C   
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGF-------QLVAQRRCEDIDEC-QDPDTCS-- 50

Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCT-----EITVPQTGPTSPCESDPRACNPPHSTCTN 183
            +C N  G Y CQC  GF  + H         I                  +   S   N
Sbjct: 51  QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 110

Query: 184 LTDYRTCNCDPGYQKDYLDD 203
           L +    + +    + Y  D
Sbjct: 111 LRNVVALDTEVASNRIYWSD 130

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 32/164 (19%), Positives = 43/164 (26%), Gaps = 34/164 (20%)

Query: 90  TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
            C+C+              +    +    N          +CF       C+C PGF G+
Sbjct: 494 QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGS 549

Query: 150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFV 209
             QC          T  C +  R        C        C C  GYQ            
Sbjct: 550 ACQCER-------TTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLPL--------- 589

Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
           C    EC   P  C     C         + ++G  G   NC  
Sbjct: 590 C---QECPGCPSPCGKYISCAEC-----LKFEKGPFGK--NCSA 623

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 114 DINECNAGTDLCHKNA------MCFNEIGSYSCQCRPGFT--GNGHQCT 154
           D++EC + +    ++       +C N +G Y C CRPG+    + H C 
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A Length = 99

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 114 DINECNAGTDLCHKNAMCF-NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
           +I++       C +N+ CF +      C+C   +   G +C E   P       C  +  
Sbjct: 1   NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNP------TCNENNG 54

Query: 173 ACNPPHSTCTNLTDYR-----TCNCDPGYQKDYLD 202
            C+   + CT           TC C         D
Sbjct: 55  GCD-ADAKCTEEDSGSNGKKITCECTKPDSYPLFD 88

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 38/147 (25%)

Query: 107 QDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSP 166
           Q  F C    +  A  ++     +  +E  +     +         C +   P       
Sbjct: 104 QVGFPCLGKQDGVAAFEVDV--IVMNSEGNTILKTPQNAIFFK--TCQQAECP-----GG 154

Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
           C             C    + R C C  G+   +         C   ++ +  P  C N 
Sbjct: 155 CR--------NGGFC---NERRICECPDGFHGPH---------C---EKALCTPR-CMNG 190

Query: 227 ADCINRPGTYQCQCKRGFSGDGFNCEE 253
             C+       C C  GF G   NC++
Sbjct: 191 GLCVT---PGFCICPPGFYGV--NCDK 212

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 125 CHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
             +NA C+  + G+   +C  GF   G +C   ++        CE +   C  P + CT 
Sbjct: 18  VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASI-------TCEENNGGC-APEAECTM 69

Query: 184 LTDYR-TCNCDPGYQKDYLD 202
                  C C     +   +
Sbjct: 70  DDKKEVECKCTKEGSEPLFE 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.89
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.88
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.87
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.83
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.83
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.82
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.78
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.78
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.75
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.75
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.72
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.67
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.65
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.61
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.57
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.56
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.55
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.55
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.54
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.54
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.51
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.42
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.41
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.4
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.4
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.38
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.33
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.33
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.31
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.31
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.29
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.28
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.28
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.28
2vh0_B	134	Activated factor XA light chain; serine protease,	99.27
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.26
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.24
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.23
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.21
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.21
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.19
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.19
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.18
2vh0_B	134	Activated factor XA light chain; serine protease,	99.17
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.1
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	99.09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.06
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.9
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.85
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	98.73
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.69
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.69
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.64
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.56
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.49
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	98.45
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.44
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	98.43
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.39
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.35
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.32
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.31
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.29
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	98.21
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.19
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.13
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.13
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.12
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.05
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.0
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.98
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.9
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.89
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.83
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.82
1ob1_C	99	Major merozoite surface protein; immune system, im	97.8
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.79
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.79
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.78
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.75
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.67
1ob1_C	99	Major merozoite surface protein; immune system, im	97.64
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.62
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.6
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.6
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.44
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.43
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.41
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.38
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.27
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.25
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.15
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.12
1szb_A	170	Mannose binding lectin-associated serine protease-	97.1
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.03
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.83
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.8
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.69
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.64
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.38
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.32
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.31
1nzi_A	159	Complement C1S component; calcium, innate immunity	96.26
2wph_E	59	Coagulation factor IXA light chain; serine proteas	96.2
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.2
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.13
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.1
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.02
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.74
1szb_A	170	Mannose binding lectin-associated serine protease-	95.51
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	95.44
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	94.99
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	94.98
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.92
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	94.57
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	94.44
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.44
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	94.13
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	94.12
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	93.99
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	93.4
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	93.28
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	93.18
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	93.14
1nzi_A	159	Complement C1S component; calcium, innate immunity	92.97
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	92.91
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	92.64
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	92.37
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	92.36
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	92.24
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	92.14
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	91.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.48
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	91.15
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.37
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	89.59
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	89.54
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	88.41
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	87.41
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	87.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	85.63
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	83.36

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.89  E-value=1.8e-24  Score=175.49  Aligned_cols=149  Identities=27%  Similarity=0.646  Sum_probs=125.0

Q ss_pred             CCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCC--CCCCCCCCeeecCC-----CCeeEeCCC
Q psy5750          72 KNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAG--TDLCHKNAMCFNEI-----GSYSCQCRP  144 (286)
Q Consensus        72 ~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~--~~~C~~~~~C~~~~-----g~~~C~C~~  144 (286)
                      ..+||. +++|++..++|+|.|++||++.       ++..|.++++|...  .++|.+++.|++..     ++|+|.|++
T Consensus         9 ~~~pC~-ng~C~~~~g~~~C~C~~G~~g~-------~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~   80 (186)
T 1z1y_A            9 VDTICX-NGQLVQMSNHFXCMCNEGLVHL-------SENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIE   80 (186)
T ss_dssp             TTCCCB-TEEEEECSSCEEEEECTTEEEE-------ETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECT
T ss_pred             CCCCCC-CCEeECCCCCeEeECCCCCccC-------CCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCC
Confidence            447888 4699999999999999999976       25678899999843  37899999999998     899999999


Q ss_pred             CcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccc----cCCCCceeeCCCCCCCCCCCCcccCCccccC--CCcCC
Q psy5750         145 GFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCT----NLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV--DECMN  218 (286)
Q Consensus       145 G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~----~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~--deC~~  218 (286)
                      ||+|+...|.         +++|..  .+| .+++.|+    +..++|+|.|++||+|..    .++..|+++  ++|..
T Consensus        81 G~~g~~~~C~---------~d~C~~--~~C-~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~----~~~~~C~~~~~~~C~~  144 (186)
T 1z1y_A           81 GYTLXEDTCV---------LDVCQY--XNC-GESGECIVEYLSEIQSAGCSCAIGXVPNP----EDEXXCTXTGETACQL  144 (186)
T ss_dssp             TEEEETTEEE---------EGGGTT--CCC-CTTEEEEEEEETTEEEEEEEECTEEEEET----TTTTEEEEEECCCCCC
T ss_pred             CCccCCCCCC---------CCcCcC--CCC-CCCCEEeeCCcCCCCCceEECCCCCcccC----CCCCcceEcCCCcccc
Confidence            9998655665         478887  579 8889998    888899999999999832    012278765  89974


Q ss_pred             CCCCC-CCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         219 YPPIC-NNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       219 ~~~~C-~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                         .| .++++|+|++++|+|.|++||+|+
T Consensus       145 ---~C~~~~~~C~n~~g~y~C~C~~G~~g~  171 (186)
T 1z1y_A          145 ---XCNTDNEVCXNVEGVYXCQCMEGFTFD  171 (186)
T ss_dssp             ---CCCTTTEEEEEETTEEEEEECTTCEEE
T ss_pred             ---cccccCcceecCCCCeeeECCCCCccC
Confidence               59 889999999999999999999998

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.88  E-value=3.1e-22  Score=153.80  Aligned_cols=129  Identities=27%  Similarity=0.703  Sum_probs=105.1

Q ss_pred             cCCCCCCC--CCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeC
Q psy5750          65 TVNDDPCK--NFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQC  142 (286)
Q Consensus        65 ~~~~~~C~--~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C  142 (286)
                      ++++|+|.  .+||.++++|++..++|+|.|++||.|..|+         .++++|..  ++|.++++|++..++|+|.|
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C~---------~~~~~C~~--~~C~~~~~C~~~~g~~~C~C   70 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---------IDVNECVS--NPCQNDATCLDQIGEFQCIC   70 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC---------EECCTTTT--CCCCSSCEEEECSSCEEEEC
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCccc---------ccCccCCC--CCCCCCCEEeCCCCCceeeC
Confidence            56899998  5899999999999999999999999987665         68899987  88999999999999999999


Q ss_pred             CCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcc-ccCCCcCCCCC
Q psy5750         143 RPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPP  221 (286)
Q Consensus       143 ~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C-~d~deC~~~~~  221 (286)
                      ++||+|  ..|+.       .+++|..  .+| .++++|++..++|+|.|++||+|.         .| .++++|...++
T Consensus        71 ~~G~~G--~~C~~-------~~~~C~~--~~C-~~~g~C~~~~g~~~C~C~~G~~G~---------~C~~~i~~C~~~~~  129 (135)
T 2vj3_A           71 MPGYEG--VHCEV-------NTDECAS--SPC-LHNGRCLDKINEFQCECPTGFTGH---------LCQVDLHHILDAQK  129 (135)
T ss_dssp             CTTEES--SSSCE-------ECCTTTT--CCS-TTTCEEEECSSCEEEECCTTEESS---------SSCEECC-------
T ss_pred             CCCCcC--Cccee-------cCCcccC--CCc-CCCCEeECCCCCeEEECCCCCcCC---------ccCccCccccCCCc
Confidence            999998  78863       1789987  689 888999999999999999999998         78 58999998776


Q ss_pred             CCCC
Q psy5750         222 ICNN  225 (286)
Q Consensus       222 ~C~~  225 (286)
                      .|.+
T Consensus       130 ~c~~  133 (135)
T 2vj3_A          130 MVWN  133 (135)
T ss_dssp             ----
T ss_pred             ceee
Confidence            6654

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.87  E-value=6.4e-22  Score=152.02  Aligned_cols=121  Identities=34%  Similarity=0.888  Sum_probs=104.6

Q ss_pred             CccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCcee-cccCCCCCCCCCCCCCCCCCCCCCCccccCCCCcee
Q psy5750         112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT-EITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC  190 (286)
Q Consensus       112 C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~-~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C  190 (286)
                      |.++|+|..+.++|.++++|++..++|+|.|++||+|  ..|+ +        +++|..  .+| .++++|++..++|+|
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G--~~C~~~--------~~~C~~--~~C-~~~~~C~~~~g~~~C   68 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG--PRCEID--------VNECVS--NPC-QNDATCLDQIGEFQC   68 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEES--TTSCEE--------CCTTTT--CCC-CSSCEEEECSSCEEE
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcC--Cccccc--------CccCCC--CCC-CCCCEEeCCCCCcee
Confidence            5789999966689999999999999999999999998  7885 5        889987  689 888999999999999


Q ss_pred             eCCCCCCCCCCCCcccCCcc-ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC-CCCeee
Q psy5750         191 NCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE-EGKYCL  258 (286)
Q Consensus       191 ~C~~G~~g~~~~~~~~~~~C-~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~-~~~~c~  258 (286)
                      .|++||+|.         .| .++++|...  .|.++++|++..++|+|.|++||+|.  .|+ ++++|.
T Consensus        69 ~C~~G~~G~---------~C~~~~~~C~~~--~C~~~g~C~~~~g~~~C~C~~G~~G~--~C~~~i~~C~  125 (135)
T 2vj3_A           69 ICMPGYEGV---------HCEVNTDECASS--PCLHNGRCLDKINEFQCECPTGFTGH--LCQVDLHHIL  125 (135)
T ss_dssp             ECCTTEESS---------SSCEECCTTTTC--CSTTTCEEEECSSCEEEECCTTEESS--SSCEECC---
T ss_pred             eCCCCCcCC---------cceecCCcccCC--CcCCCCEeECCCCCeEEECCCCCcCC--ccCccCcccc
Confidence            999999987         67 489999875  49999999999999999999999987  896 355553

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.83  E-value=3.1e-22  Score=158.63  Aligned_cols=147  Identities=29%  Similarity=0.675  Sum_probs=109.1

Q ss_pred             CCCCCCC-CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCC--cCCCCCCC--CCCCeeecCCC----C
Q psy5750          67 NDDPCKN-FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINE--CNAGTDLC--HKNAMCFNEIG----S  137 (286)
Q Consensus        67 ~~~~C~~-~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~--C~~~~~~C--~~~~~C~~~~g----~  137 (286)
                      ++|+|.. +||. +++|+++.++|+|.|++||.+.  .    ++..|+++++  |....++|  ..++.|++..+    +
T Consensus         2 dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~--~----~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~   74 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELN--P----TRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSK   74 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEEC--T----TSSBEECCCCEEEEEEC----------CEEEEEEEECH
T ss_pred             ccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeEC--C----CCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccC
Confidence            6899985 8997 7999999999999999999864  2    4677888877  87544445  34678998877    8


Q ss_pred             eeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCC--CCCCCCCCCcccCCccccCCC
Q psy5750         138 YSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDP--GYQKDYLDDRRVAFVCTDVDE  215 (286)
Q Consensus       138 ~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~--G~~g~~~~~~~~~~~C~d~de  215 (286)
                      |+|.|++||.. +..|..                  | ..     +..++|+|.|++  ||++...     +..|+||||
T Consensus        75 ~~C~C~~G~~~-~~~C~~------------------C-~~-----~~~~~y~C~C~~g~G~~~~~~-----~~~c~dide  124 (162)
T 1uzk_A           75 ASCCCSLGKAW-GTPCEM------------------C-PA-----VNTSEYKILCPGGEGFRPNPI-----TVILEDIDE  124 (162)
T ss_dssp             HHHHTTTCCEE-TTTTEE------------------C-CC-----TTSHHHHHHCTTCTTEEECTT-----TCCEEECCH
T ss_pred             ceeeCCCCCCc-CCCccc------------------C-CC-----CCCCCceeECCCCCCcccCCC-----CCccCcccc
Confidence            99999999983 022221                  2 11     245789999988  9988632     225799999


Q ss_pred             cCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         216 CMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       216 C~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      |...++.|.+ ++|+|++|+|+|.|++||+|  ++++|
T Consensus       125 C~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g~~d~~~C  161 (162)
T 1uzk_A          125 CQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTRVC  161 (162)
T ss_dssp             HHHCGGGGBT-SEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred             ccCCCCCcCC-CEeEcCCCCEEeeCCCCccCCCCCCcc
Confidence            9877677985 79999999999999999998  45665

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.83  E-value=4e-20  Score=173.11  Aligned_cols=146  Identities=31%  Similarity=0.745  Sum_probs=119.8

Q ss_pred             CCCCCCCCCCCCCCeeeeCCC-CCeE-ecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCC---eeecCCCCeeEe
Q psy5750          67 NDDPCKNFFCVANSSCIVEDD-KPTC-ICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNA---MCFNEIGSYSCQ  141 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g-~~~C-~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~---~C~~~~g~~~C~  141 (286)
                      ++++|..+||.++++|++..+ +|+| .|++||+|.        +..|+++++|...++.|.+++   .|+++.++|+|.
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~GytGd--------g~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~   73 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN--------GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCL   73 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSCEEECCCCTTBCSC--------SSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEEC
T ss_pred             cccccCCCCCCCCCEEecCCCCCeECCcCCCccCCC--------CCCccccccccCCCCcccCCccccceeeccCceecc
Confidence            678999999999999999975 4999 999999853        577899999997445599988   999999999998


Q ss_pred             -CCCCcccCCC-------------ceecccCCCCCCCCCCCCCCCCCCCCCCccccCC----CCceeeCCCCCCCCCCCC
Q psy5750         142 -CRPGFTGNGH-------------QCTEITVPQTGPTSPCESDPRACNPPHSTCTNLT----DYRTCNCDPGYQKDYLDD  203 (286)
Q Consensus       142 -C~~G~~g~~~-------------~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~----g~~~C~C~~G~~g~~~~~  203 (286)
                       |++||+|...             .|.+        +++|....++| .++++|+++.    ++|+|.|++||.|.+.  
T Consensus        74 ~C~~Gy~G~~c~g~g~~~~~~dg~~C~d--------ideC~~~~~pC-~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~--  142 (634)
T 1yo8_A           74 PCPPRYRGNQPVGVGLEAAKTEKQVCEP--------ENPCKDKTHNC-HKHAECIYLGHFSDPMYKCECQTGYAGDGL--  142 (634)
T ss_dssp             CCCTTEEECCCEESSSHHHHSCCCCEEE--------CCTTTTTCCCC-CTTEEEEECCTTCSSSEEEEECTTEEESSS--
T ss_pred             cCCCCcccCccccccccccccCCCcccc--------cccccCCCccc-ccCccccccccccccceeeeccCCccccCc--
Confidence             9999998543             3777        89999766799 8889999988    9999999999998644  


Q ss_pred             cccCCccc---cCCCcCCCCCCCCCCCeeeeCCCCeeee---cCCC
Q psy5750         204 RRVAFVCT---DVDECMNYPPICNNNADCINRPGTYQCQ---CKRG  243 (286)
Q Consensus       204 ~~~~~~C~---d~deC~~~~~~C~~~~~C~n~~g~y~C~---C~~G  243 (286)
                           .|+   +++||....+.|..+       ++|.|.   |+.+
T Consensus       143 -----~Ce~d~DiDeC~~~~~~C~~~-------~~y~C~~dnC~~~  176 (634)
T 1yo8_A          143 -----ICGEDSDLDGWPNLNLVCATN-------ATYHCIKDNCPHL  176 (634)
T ss_dssp             -----SEEECTTSSSSCSSCCTTTTT-------CSSSCSCCSSTTS
T ss_pred             -----ccccccCcccccCCCCcccCC-------CCccccccccccc
Confidence                 785   899998776677632       456665   6654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.82  E-value=2.2e-20  Score=174.90  Aligned_cols=141  Identities=29%  Similarity=0.642  Sum_probs=116.7

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCC-CeeE-eCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCC---ccccCCCCc
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIG-SYSC-QCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHS---TCTNLTDYR  188 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g-~~~C-~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~---~C~~~~g~~  188 (286)
                      ++++|..  ++|.++++|++..+ +|+| .|++||+|++..|++        +++|...++.| .+++   +|+++.++|
T Consensus         2 DIDeC~~--nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg~~CeD--------iDEC~~~p~~C-~~gg~~~~CvNt~gsY   70 (634)
T 1yo8_A            2 DPDGCLS--NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCED--------LDECALVPDIC-FSTSKVPRCVNTQPGF   70 (634)
T ss_dssp             --CGGGG--CCSCTTCCEEECTTSCEEECCCCTTBCSCSSSCCB--------CCTTTTSCCCS-CCCSSSCCEEECSSSE
T ss_pred             cccccCC--CCCCCCCEEecCCCCCeECCcCCCccCCCCCCccc--------cccccCCCCcc-cCCccccceeeccCce
Confidence            6789976  89999999999985 5999 999999998899998        99999866669 8877   999999999


Q ss_pred             eee-CCCCCCCCCCCC------cccCCccccCCCcCCCCCCCCCCCeeeeCC----CCeeeecCCCCcCCCCCcC---CC
Q psy5750         189 TCN-CDPGYQKDYLDD------RRVAFVCTDVDECMNYPPICNNNADCINRP----GTYQCQCKRGFSGDGFNCE---EG  254 (286)
Q Consensus       189 ~C~-C~~G~~g~~~~~------~~~~~~C~d~deC~~~~~~C~~~~~C~n~~----g~y~C~C~~Gy~gdg~~C~---~~  254 (286)
                      +|. |++||+|..+..      ...+..|++++||...++.|.++++|+|+.    ++|+|.|++||.|+|+.|+   .+
T Consensus        71 ~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~Di  150 (634)
T 1yo8_A           71 HCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDL  150 (634)
T ss_dssp             EECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSSSEEECTTS
T ss_pred             ecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCcccccccCc
Confidence            998 999999886420      113345999999998767899999999998    9999999999999999997   45


Q ss_pred             Ceeecccccccc
Q psy5750         255 KYCLVVGITLCK  266 (286)
Q Consensus       255 ~~c~~~~~~~c~  266 (286)
                      .+|.. ....|.
T Consensus       151 DeC~~-~~~~C~  161 (634)
T 1yo8_A          151 DGWPN-LNLVCA  161 (634)
T ss_dssp             SSSCS-SCCTTT
T ss_pred             ccccC-CCCccc
Confidence            66643 234555

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.78  E-value=2.1e-19  Score=139.35  Aligned_cols=123  Identities=28%  Similarity=0.702  Sum_probs=98.2

Q ss_pred             CCCCCCCeeecCCCCeeEeCCCCcccC-------CCceecccCCCCCCCCCCCCCC-CCCCCCCCccccCCCCceeeCCC
Q psy5750         123 DLCHKNAMCFNEIGSYSCQCRPGFTGN-------GHQCTEITVPQTGPTSPCESDP-RACNPPHSTCTNLTDYRTCNCDP  194 (286)
Q Consensus       123 ~~C~~~~~C~~~~g~~~C~C~~G~~g~-------~~~C~~~~~~~~~~~~~C~~~~-~~C~~~~~~C~~~~g~~~C~C~~  194 (286)
                      ++|.++++|++.   |+|.|++||+|.       +..|++        +++|.... .+| .++++|+++.++|+|.|++
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~d--------ideC~~~~~~~C-~~~~~C~n~~g~y~C~C~~   74 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDD--------INECATLSKVSC-GKFSDCWNTEGSYDCVCSP   74 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCEE--------CCGGGC----CC-CTTEEEEECSSCEEEEECT
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCCc--------cccccCCCCCCC-CCCCEEEcCCCCeEeECCC
Confidence            689999999875   899999999984       467887        89998742 379 8889999999999999999


Q ss_pred             CCCCCCCCC---cccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC--CCCcCCCCee
Q psy5750         195 GYQKDYLDD---RRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD--GFNCEEGKYC  257 (286)
Q Consensus       195 G~~g~~~~~---~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd--g~~C~~~~~c  257 (286)
                      ||++.....   ...+..|+|+|||...++.|.++++|+|++|+|+|.|++||+|+  ++.|+....|
T Consensus        75 Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C  142 (143)
T 2bou_A           75 GYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC  142 (143)
T ss_dssp             TEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCB
T ss_pred             CcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCcc
Confidence            999874321   11233789999999766779999999999999999999999985  3556544443

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.78  E-value=4.7e-19  Score=137.37  Aligned_cols=119  Identities=29%  Similarity=0.802  Sum_probs=93.3

Q ss_pred             CCcCCCCCCCCCCCeeecCC--CCeeEeCCCCcccCCCceecccCC-----CCCCCCCCCCCCCCCCCCCCccc------
Q psy5750         116 NECNAGTDLCHKNAMCFNEI--GSYSCQCRPGFTGNGHQCTEITVP-----QTGPTSPCESDPRACNPPHSTCT------  182 (286)
Q Consensus       116 ~~C~~~~~~C~~~~~C~~~~--g~~~C~C~~G~~g~~~~C~~~~~~-----~~~~~~~C~~~~~~C~~~~~~C~------  182 (286)
                      |+|..  ++|.++++|++..  ++|+|.|++||+|  ..|+.....     ....+++|..  .+| .+++.|+      
T Consensus         1 d~C~~--~pC~~~g~C~~~~~~g~~~C~C~~G~~G--~~C~~~~~~~~~~~~c~~~~~C~~--~~C-~~~g~C~~~~~~~   73 (143)
T 4d90_A            1 DICDP--NPCENGGICLPGLADGSFSCECPDGFTD--PNCSSVVEVASDEEEPTSAGPCTP--NPC-HNGGTCEISEAYR   73 (143)
T ss_dssp             --CCS--CCCGGGCEEEC-----CCEEECCTTCCT--TTTCSCCCCTTTTTSCCCCCTTSS--CCC-CTTCEEEECCCEE
T ss_pred             CcCCC--CcCCCCCEeeCCCCCCCEEeECCCCCCC--CCCccCccccccccccccCCcCCC--CCC-CCCCEecCCCccc
Confidence            46766  8899999999876  6899999999998  677642111     1113577876  678 8889998      


Q ss_pred             -cCCCCceeeCCCCCCCCCCCCcccCCccc-cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         183 -NLTDYRTCNCDPGYQKDYLDDRRVAFVCT-DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       183 -~~~g~~~C~C~~G~~g~~~~~~~~~~~C~-d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                       +..++|+|.|++||.|.         .|+ ++|+|...+  |.++++|+++.++|+|.|++||+|+  .|+..
T Consensus        74 ~~~~~~~~C~C~~G~~G~---------~C~~~i~~C~~~~--C~~~~~C~~~~g~~~C~C~~G~~G~--~c~~~  134 (143)
T 4d90_A           74 GDTFIGYVCKCPRGFNGI---------HCQHNINECEVEP--CKNGGICTDLVANYSCECPGEFMGR--NCQYK  134 (143)
T ss_dssp             TTEECCEEEECCTTEEST---------TSCEECCTTTTCC--SCTTCEEEEETTEEEEECCTTCBST--TSCBC
T ss_pred             cCCCCCeEeECcCCCcCC---------CcccCCCcCCCCC--CCCCCEeECCCCCeEeECCCCCccC--Cceec
Confidence             66789999999999987         785 999998654  9999999999999999999999998  66443

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.75  E-value=3.1e-18  Score=132.68  Aligned_cols=118  Identities=24%  Similarity=0.590  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCCCeeeeCC--CCCeEecCCCcccccccccC---CCCCCCccCCCcCCCCCCCCCCCeee-------cCCC
Q psy5750          69 DPCKNFFCVANSSCIVED--DKPTCICNRGFQQLYSEDRL---QDDFGCFDINECNAGTDLCHKNAMCF-------NEIG  136 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~--g~~~C~C~~g~~~~~c~~~~---~~~~~C~~~~~C~~~~~~C~~~~~C~-------~~~g  136 (286)
                      |+|..+||.++++|++..  ++|+|.|++||+|..|+...   .....|.++++|..  ++|.+++.|+       +..+
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~--~~C~~~g~C~~~~~~~~~~~~   78 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP--NPCHNGGTCEISEAYRGDTFI   78 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSS--CCCCTTCEEEECCCEETTEEC
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCCC--CCCCCCCEecCCCccccCCCC
Confidence            578889999999999875  68999999999998886321   12345667889987  8899999999       6778


Q ss_pred             CeeEeCCCCcccCCCcee-cccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCC
Q psy5750         137 SYSCQCRPGFTGNGHQCT-EITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYL  201 (286)
Q Consensus       137 ~~~C~C~~G~~g~~~~C~-~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~  201 (286)
                      +|+|.|++||.|  ..|+ +        +++|..  .+| .++++|++..++|+|.|++||+|+..
T Consensus        79 ~~~C~C~~G~~G--~~C~~~--------i~~C~~--~~C-~~~~~C~~~~g~~~C~C~~G~~G~~c  131 (143)
T 4d90_A           79 GYVCKCPRGFNG--IHCQHN--------INECEV--EPC-KNGGICTDLVANYSCECPGEFMGRNC  131 (143)
T ss_dssp             CEEEECCTTEES--TTSCEE--------CCTTTT--CCS-CTTCEEEEETTEEEEECCTTCBSTTS
T ss_pred             CeEeECcCCCcC--CCcccC--------CCcCCC--CCC-CCCCEeECCCCCeEeECCCCCccCCc
Confidence            999999999998  8897 6        899986  689 88999999999999999999999844

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.75  E-value=1.9e-18  Score=133.94  Aligned_cols=127  Identities=31%  Similarity=0.672  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCC-CCCCCCCeeecCCCCeeEeCCCCcccC
Q psy5750          71 CKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGT-DLCHKNAMCFNEIGSYSCQCRPGFTGN  149 (286)
Q Consensus        71 C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~-~~C~~~~~C~~~~g~~~C~C~~G~~g~  149 (286)
                      |. ++|.++++|++.   |+|.|++||++.. .....++..|+++++|.... ++|.+++.|++..++|+|.|++||++.
T Consensus         5 C~-~~C~~~~~C~~~---~~C~C~~G~~g~~-~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~   79 (143)
T 2bou_A            5 CA-RWCPQDSSCVNA---TACRCNPGFSSFS-EIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPV   79 (143)
T ss_dssp             CC-TTCCTTEEESSS---SCEEECTTEECSS-SSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEET
T ss_pred             Cc-CcCCCCCEEcCC---CEEeCCCCCcCcc-ccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccC
Confidence            44 489999999975   8999999999752 10111457899999998732 389999999999999999999999985


Q ss_pred             ----------CCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCc
Q psy5750         150 ----------GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDEC  216 (286)
Q Consensus       150 ----------~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC  216 (286)
                                +..|.+        +++|....++| .++++|+++.++|+|.|++||++...     ...|.++++|
T Consensus        80 ~~~~~~~~~~~~~C~d--------ideC~~~~~~C-~~~~~C~n~~g~y~C~C~~Gy~g~~~-----~~~C~~~~~C  142 (143)
T 2bou_A           80 SGAKTFKNESENTCQD--------VDECSSGQHQC-DSSTVCFNTVGSYSCRCRPGWKPRHG-----IPNNQKDTVC  142 (143)
T ss_dssp             TCCSCBSSGGGCCEEE--------CCHHHHTCCCC-CTTSEEEECSSCEEEECCSSSCBCTT-----CCSSBTTCCB
T ss_pred             cCccccccCCCCCcCC--------ccCccCcCCCC-CCCCEEECCCCCEEeeCCCCcccCCC-----CccCccCCcc
Confidence                      347887        89998656789 88899999999999999999999843     2356666665

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.72  E-value=7.6e-19  Score=142.24  Aligned_cols=128  Identities=22%  Similarity=0.575  Sum_probs=107.5

Q ss_pred             CCCCCCCeeecCCCCeeEeCCCCcccC-CCceecccCCCCCCCCCCCCC--CCCCCCCCCccccCC-----CCceeeCCC
Q psy5750         123 DLCHKNAMCFNEIGSYSCQCRPGFTGN-GHQCTEITVPQTGPTSPCESD--PRACNPPHSTCTNLT-----DYRTCNCDP  194 (286)
Q Consensus       123 ~~C~~~~~C~~~~g~~~C~C~~G~~g~-~~~C~~~~~~~~~~~~~C~~~--~~~C~~~~~~C~~~~-----g~~~C~C~~  194 (286)
                      ++|.+ ++|++..++|+|.|++||+|. +..|++        +++|...  ..+| .++++|++..     ++|+|.|++
T Consensus        11 ~pC~n-g~C~~~~g~~~C~C~~G~~g~~~~~C~~--------id~C~~~~~~~~C-~~~~~C~~~~~~~~~g~y~C~C~~   80 (186)
T 1z1y_A           11 TICXN-GQLVQMSNHFXCMCNEGLVHLSENTCEE--------XNECXXETLGXAC-GEFGQCIENPDPAQVNMYXCGCIE   80 (186)
T ss_dssp             CCCBT-EEEEECSSCEEEEECTTEEEEETTEEEE--------CCCCSGGGTTSEE-ETTEEEEECSSTTSSCSEEEEECT
T ss_pred             CCCCC-CEeECCCCCeEeECCCCCccCCCCccCC--------CCcccCCCCCCCC-CCCCEeecCCCCcCCCCEECCCCC
Confidence            78885 599999999999999999983 458998        8999843  3789 8889999988     899999999


Q ss_pred             CCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeee----eCCCCeeeecCCCCcC---CCCCcCCC--Ceeeccccccc
Q psy5750         195 GYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCI----NRPGTYQCQCKRGFSG---DGFNCEEG--KYCLVVGITLC  265 (286)
Q Consensus       195 G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~----n~~g~y~C~C~~Gy~g---dg~~C~~~--~~c~~~~~~~c  265 (286)
                      ||+|...       .|. +|+|...+  |.++++|+    ++.++|+|.|++||+|   ++..|++.  .+|..    +|
T Consensus        81 G~~g~~~-------~C~-~d~C~~~~--C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~----~C  146 (186)
T 1z1y_A           81 GYTLXED-------TCV-LDVCQYXN--CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL----XC  146 (186)
T ss_dssp             TEEEETT-------EEE-EGGGTTCC--CCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCCC----CC
T ss_pred             CCccCCC-------CCC-CCcCcCCC--CCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCcccc----cc
Confidence            9999854       566 89998765  99999999    8899999999999999   77899764  56742    68


Q ss_pred             -ccceeeeec
Q psy5750         266 -KMYLEVVNI  274 (286)
Q Consensus       266 -~~~~~~~~~  274 (286)
                       ...+++++.
T Consensus       147 ~~~~~~C~n~  156 (186)
T 1z1y_A          147 NTDNEVCXNV  156 (186)
T ss_dssp             CTTTEEEEEE
T ss_pred             cccCcceecC
Confidence             777777764

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.67  E-value=4.7e-18  Score=132.30  Aligned_cols=128  Identities=31%  Similarity=0.659  Sum_probs=85.6

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccC--CCceecccCC--C-CCCCCCCCCCCCCCCCCCCccccCCCC
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN--GHQCTEITVP--Q-TGPTSPCESDPRACNPPHSTCTNLTDY  187 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~--~~~C~~~~~~--~-~~~~~~C~~~~~~C~~~~~~C~~~~g~  187 (286)
                      ++||+|..  ++|.+ ++|+++.++|+|.|++||+++  +..|.+....  . ...-..|......| .....|.+..+.
T Consensus         2 ~dideC~~--~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~~~~c-~~~~~C~~~~g~   77 (147)
T 2w86_A            2 ADIDECES--SPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGA-TLKSQCCSSLGA   77 (147)
T ss_dssp             CCCCGGGG--CCSBT-SEEEEETTEEEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEEEEEE-ECHHHHHTTTCS
T ss_pred             CcCccCcC--CCCCC-CEeECCCCCEEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccCCCcc-ccCCccccCcCc
Confidence            57899987  88975 799999999999999999974  3456541000  0 00000122111112 112233333332


Q ss_pred             ----------ceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC--CCCc
Q psy5750         188 ----------RTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD--GFNC  251 (286)
Q Consensus       188 ----------~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd--g~~C  251 (286)
                                |.|.|++||++.      .+..|+|||||...++.|.+ ++|+|++|+|+|.|++||+|+  +++|
T Consensus        78 ~~g~~C~~c~~~C~C~~Gy~~~------~g~~C~dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~g~~~~~~C  146 (147)
T 2w86_A           78 AWGSPCTLCQVDPICGKGYSRI------KGTQCEDIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDATGRIC  146 (147)
T ss_dssp             EETTTTEECCCCTTTCTTEEEE------ETTEEEECCHHHHSTTCSSS-SEEEEETTEEEEECCTTCCBCTTSSCB
T ss_pred             ccCCCcccCCCcccCCCccccC------CCCccCccccccCCCCCCCC-CEEECCCCCEEeeCCCCCccCCCCCee
Confidence                      788999999631      11289999999987788985 599999999999999999986  4555

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.65  E-value=8.8e-17  Score=120.20  Aligned_cols=106  Identities=35%  Similarity=0.793  Sum_probs=83.9

Q ss_pred             ccCCCcCCCCCCCCCCCeeecC-CCCeeEeCCCCcccCCC---ceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCc
Q psy5750         113 FDINECNAGTDLCHKNAMCFNE-IGSYSCQCRPGFTGNGH---QCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR  188 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~-~g~~~C~C~~G~~g~~~---~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~  188 (286)
                      .++|+|..  ++|.+  +|++. .++|+|.|++||+|...   .|..          +|..  .+| .  +.|++ .++|
T Consensus         2 ~dideC~~--~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~----------~C~~--~~C-~--~~C~~-~~~y   61 (118)
T 1dx5_I            2 EPVDPCFR--ANCEY--QCQPLDQTSYLCVCAEGFAPIPHEPHRCQM----------FCNQ--TAC-P--ADCDP-NTQA   61 (118)
T ss_dssp             CCCCGGGG--CCCSS--EEEECSSSCEEEECCTTEEEETTEEEEEEE----------CCCS--SEE-E--CEECT-TSTT
T ss_pred             CccccCCC--CCCCC--CCCCCCCCCEEeECCCCccccCCCCCcccc----------ccCC--CCC-C--CcccC-CCCe
Confidence            47899976  89984  99999 89999999999998421   2332          2433  556 3  68888 5899


Q ss_pred             eeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         189 TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       189 ~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                      +|.|++||++..      +..|+|+|||... +.|  +++|+|++|+|+|.|++||+|+
T Consensus        62 ~C~C~~Gy~~~~------g~~C~dideC~~~-~~C--~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           62 SCECPEGYILDD------GFICTDIDECENG-GFC--SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             CEECCTTEEEET------TTEEEECCHHHHC-SSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             EeECCCCccCCC------CCccccccccCCC-CCC--cCeEEeCCCCEEEECCCCCccC
Confidence            999999999541      1289999999872 458  6899999999999999999975

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.61  E-value=4.8e-19  Score=148.37  Aligned_cols=159  Identities=9%  Similarity=-0.026  Sum_probs=116.4

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCcccccccccCC--------------------CCCCCccCCCcCCCCCCCCCCCeeec
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQ--------------------DDFGCFDINECNAGTDLCHKNAMCFN  133 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~--------------------~~~~C~~~~~C~~~~~~C~~~~~C~~  133 (286)
                      .+|.++++|++..++|+|.|++||++..|+..+.                    .+..|...++|..  .+|.++++|++
T Consensus        38 ~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s--~pC~ngG~C~~  115 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVS--IKSNDGGKTLT  115 (267)
T ss_dssp             EECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEE--EECSSTTSEEE
T ss_pred             CCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccccccCC--CCCCCCCEEec
Confidence            4788999999999999999999999998875332                    3456777788887  88999999999


Q ss_pred             CCCCeeEeCCCCcccCCCceecccCC---------------------CCCCC-CCCCCCCCCCCCCCCccccCCCCceee
Q psy5750         134 EIGSYSCQCRPGFTGNGHQCTEITVP---------------------QTGPT-SPCESDPRACNPPHSTCTNLTDYRTCN  191 (286)
Q Consensus       134 ~~g~~~C~C~~G~~g~~~~C~~~~~~---------------------~~~~~-~~C~~~~~~C~~~~~~C~~~~g~~~C~  191 (286)
                      ...+|+|.|+.||+|  ..|+.....                     ..... ..|..  .+| .++++|++..++|+|.
T Consensus       116 ~~~sy~C~C~~Gf~G--~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~--~~c-~ngg~C~dg~~~y~C~  190 (267)
T 4fbr_A          116 GTTTYNGEGPIGFKS--EVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVD--AKS-NDGGKTLSGTMTYNGE  190 (267)
T ss_dssp             EEEEETTSCCEEEEE--EECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEE--EEC-SSTTSEEEEEEEETTS
T ss_pred             CCccEEeeCCCCccc--cCCCCCcccccccCCcCCccccCCcceecccccccccccCC--CCC-CCCCEeeCCCCCeEEe
Confidence            999999999999998  555431100                     00001 11222  457 7889999999999999


Q ss_pred             CCCCCCCCCCCCcccCCccccCCCcCC------C---------------------CCCCCCCCeeeeCCCCeeeecCCCC
Q psy5750         192 CDPGYQKDYLDDRRVAFVCTDVDECMN------Y---------------------PPICNNNADCINRPGTYQCQCKRGF  244 (286)
Q Consensus       192 C~~G~~g~~~~~~~~~~~C~d~deC~~------~---------------------~~~C~~~~~C~n~~g~y~C~C~~Gy  244 (286)
                      |++||+|..+.        .++++|..      .                     ...|.++++|++...+|.|.||+||
T Consensus       191 Cp~Gf~G~~c~--------~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~dg~~sy~CeCp~GF  262 (267)
T 4fbr_A          191 GPIGFRGTLTS--------PDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGTMIYNGEGPIGF  262 (267)
T ss_dssp             CCEEEEEEEEE--------TTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEEEEEEETTSCCEEE
T ss_pred             CCCCccccccc--------cccceeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeCCCcceeecCCCCc
Confidence            99999998332        33444211      1                     0146777888888888888888888


Q ss_pred             cCC
Q psy5750         245 SGD  247 (286)
Q Consensus       245 ~gd  247 (286)
                      +|.
T Consensus       263 ~G~  265 (267)
T 4fbr_A          263 RAR  265 (267)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            864

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.57  E-value=1.6e-15  Score=120.58  Aligned_cols=127  Identities=28%  Similarity=0.693  Sum_probs=95.7

Q ss_pred             CCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCC-CCCeeecCCCCeeEeCCCCcccCCCce
Q psy5750          75 FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH-KNAMCFNEIGSYSCQCRPGFTGNGHQC  153 (286)
Q Consensus        75 ~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~-~~~~C~~~~g~~~C~C~~G~~g~~~~C  153 (286)
                      .|..+++|..   ...|.|++||.|..|+         .  +.|.   ..|. .++.|++   .|.|.|++||+|  ..|
T Consensus        39 ~c~~~g~C~~---~g~C~C~~G~~G~~C~---------~--~~C~---~~C~~~~g~C~~---~~~C~C~~G~~G--~~C   96 (169)
T 2vj2_A           39 DFFGHYACDQ---NGNKTCMEGWMGPECN---------R--AICR---QGCSPKHGSCKL---PGDCRCQYGWQG--LYC   96 (169)
T ss_dssp             ETTEEEEECS---SCCEEECTTEESTTSC---------E--ECCC---TTCCTTTEECSS---TTCCEECTTEES--SSS
T ss_pred             CcCCCCEeCC---CCeeECCCCCcCCCCC---------C--CCCC---CCCCCCCcccCC---CCeeECCCCCCC--CCc
Confidence            5667788864   3489999999987665         1  2354   3464 5567865   579999999998  667


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccc-cCCCcCCCCCCCCCCCeeeeC
Q psy5750         154 TEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCT-DVDECMNYPPICNNNADCINR  232 (286)
Q Consensus       154 ~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~-d~deC~~~~~~C~~~~~C~n~  232 (286)
                      +.           |... ..| .+ ++|+   ++|+|.|++||+|.         .|+ ++++|.. ...|.++++|+++
T Consensus        97 ~~-----------C~~~-~~C-~~-g~C~---~~~~C~C~~G~~G~---------~C~~~~~~C~~-~~~C~~~g~C~~~  149 (169)
T 2vj2_A           97 DK-----------CIPH-PGC-VH-GICN---EPWQCLCETNWGGQ---------LCDKDLNYCGT-HQPCLNGGTCSNT  149 (169)
T ss_dssp             CE-----------ECCC-TTC-SS-EECS---STTCCEECTTEETT---------TTCEESCHHHH-TCCCCTTCEEEEC
T ss_pred             cc-----------CCCC-CCC-CC-CCcC---CCCEEeCCCCCCCC---------cccCCCCCCCC-CCCCCCCCEEcCC
Confidence            53           3331 236 43 4776   57899999999987         785 8999975 2459999999996


Q ss_pred             -CCCeeeecCCCCcCCCCCcC
Q psy5750         233 -PGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       233 -~g~y~C~C~~Gy~gdg~~C~  252 (286)
                       +++|+|+|++||+|+  .|+
T Consensus       150 ~~~~~~C~C~~G~~G~--~Ce  168 (169)
T 2vj2_A          150 GPDKYQCSCPEGYSGP--NCE  168 (169)
T ss_dssp             STTCEEEECCTTCCST--TSC
T ss_pred             CCCCcEeECCCCCcCc--CcC
Confidence             899999999999988  774

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.56  E-value=1.2e-14  Score=138.08  Aligned_cols=168  Identities=25%  Similarity=0.571  Sum_probs=121.1

Q ss_pred             CCCCCCCCCCCeeeeCCCCCe---EecCCCcccccccccCCCCCCCccCCCcCCCC--CCCCCCCeeecCCCCeeEeCC-
Q psy5750          70 PCKNFFCVANSSCIVEDDKPT---CICNRGFQQLYSEDRLQDDFGCFDINECNAGT--DLCHKNAMCFNEIGSYSCQCR-  143 (286)
Q Consensus        70 ~C~~~~C~~~~~C~~~~g~~~---C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~--~~C~~~~~C~~~~g~~~C~C~-  143 (286)
                      +|..+||.+++.|.+..|.|.   |.|.+||.|..|+.... ...-...++|....  .+|.+++.|++    +.|.|. 
T Consensus       436 ~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~-~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~  510 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEE-DYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHS  510 (690)
T ss_dssp             GGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC-------CCCCSSSSSSCGGGGSEEECS----SSEEECC
T ss_pred             CCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccC-ccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeec
Confidence            677889999999987777777   99999999998872110 00111235676421  46999999984    489999 


Q ss_pred             ---CCcccCCCceecccCCCCCCCCCCCCC-CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcc-ccCCCcCC
Q psy5750         144 ---PGFTGNGHQCTEITVPQTGPTSPCESD-PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMN  218 (286)
Q Consensus       144 ---~G~~g~~~~C~~~~~~~~~~~~~C~~~-~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C-~d~deC~~  218 (286)
                         +||.|  ..|+.       +++.|... ..+| .+++.|++    +.|.|.+||+|..+       .| .++++|..
T Consensus       511 ~~~~Gy~G--~~Ce~-------~~~~C~~~~~~~C-~~~G~C~~----g~C~C~~Gy~G~~C-------eC~~~~~~C~~  569 (690)
T 3fcs_B          511 SDFGKITG--KYCEC-------DDFSCVRYKGEMC-SGHGQCSC----GDCLCDSDWTGYYC-------NCTTRTDTCMS  569 (690)
T ss_dssp             CSSCCCBS--TTSCB-------CSSCCCBSSSSBG-GGSEEEET----TEEEECTTEESSSS-------CEECCCTTTBC
T ss_pred             CCCCCeeC--CCcCc-------ccCcCcCCCCCCC-CCCCEecC----CeeECcCCCcCCCC-------ccCCCCCcccC
Confidence               99999  78863       25677631 2468 77889976    69999999999955       34 36889975


Q ss_pred             CC-CCCCCCCeeeeCCCCeeeec-CCCCcCCCCCcCCCCeeecccccccccceeeee
Q psy5750         219 YP-PICNNNADCINRPGTYQCQC-KRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVN  273 (286)
Q Consensus       219 ~~-~~C~~~~~C~n~~g~y~C~C-~~Gy~gdg~~C~~~~~c~~~~~~~c~~~~~~~~  273 (286)
                      .. ..|.++++|++    ..|.| ++||.|.  .|+.-..|    ...|..+++|++
T Consensus       570 ~~g~~C~~~G~C~~----g~C~C~~~Gy~G~--~Ce~C~~C----~~~C~~~g~Cv~  616 (690)
T 3fcs_B          570 SNGLLCSGRGKCEC----GSCVCIQPGSYGD--TCEKCPTC----PDACTFKKECVE  616 (690)
T ss_dssp             TTSSBTSSSCEEET----TEEECCSTTCBST--TSCBCTTS----CCTTTSCCGGGT
T ss_pred             CCCCCCCCCCEEeC----CEEECCCCCccCC--CcCcCCCC----CCCCCCCCCccc
Confidence            32 46999999986    39999 9999988  88652334    345777777664

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.6e-16  Score=123.57  Aligned_cols=118  Identities=21%  Similarity=0.501  Sum_probs=84.9

Q ss_pred             CCCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCC-----------CcCCCCCCCCCCCeeecC
Q psy5750          66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDIN-----------ECNAGTDLCHKNAMCFNE  134 (286)
Q Consensus        66 ~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~-----------~C~~~~~~C~~~~~C~~~  134 (286)
                      .++|+|+.+||.+ ++|+++.++|+|.|++||++..+      +..|.++.           .|....+.|.....|.+.
T Consensus         2 ~dideC~~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~------~~~C~~~~~~~C~~~~~g~~C~~~~~~c~~~~~C~~~   74 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSPGSFICECSSESTLDPT------KTICIETIKGTCWQTVIDGRCEININGATLKSQCCSS   74 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEETTEEEEECCTTEEECTT------SSBEEECCCEEEEEEEETTEEEEEEEEEECHHHHHTT
T ss_pred             CcCccCcCCCCCC-CEeECCCCCEEeECCCCcccCCC------CCeecCCCCCcccCCCCCCccccCCCccccCCccccC
Confidence            4789999999984 79999999999999999997633      23343322           121111112111233333


Q ss_pred             CCC----------eeEeCCCCccc-CCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCC
Q psy5750         135 IGS----------YSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDY  200 (286)
Q Consensus       135 ~g~----------~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~  200 (286)
                      .++          |.|.|++||++ ++..|++        +++|...+++| .+ ++|+++.++|+|.|++||++..
T Consensus        75 ~g~~~g~~C~~c~~~C~C~~Gy~~~~g~~C~d--------ideC~~~~~~C-~~-g~C~n~~g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           75 LGAAWGSPCTLCQVDPICGKGYSRIKGTQCED--------IDECEVFPGVC-KN-GLCVNTRGSFKCQCPSGMTLDA  141 (147)
T ss_dssp             TCSEETTTTEECCCCTTTCTTEEEEETTEEEE--------CCHHHHSTTCS-SS-SEEEEETTEEEEECCTTCCBCT
T ss_pred             cCcccCCCcccCCCcccCCCccccCCCCccCc--------cccccCCCCCC-CC-CEEECCCCCEEeeCCCCCccCC
Confidence            333          78899999973 3489998        99998766779 64 5999999999999999999873

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.55  E-value=1.6e-15  Score=113.31  Aligned_cols=108  Identities=30%  Similarity=0.626  Sum_probs=85.6

Q ss_pred             CCCCCCCCCCCCCCCeeeeC-CCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCC
Q psy5750          66 VNDDPCKNFFCVANSSCIVE-DDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRP  144 (286)
Q Consensus        66 ~~~~~C~~~~C~~~~~C~~~-~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~  144 (286)
                      .++|+|..+||.+  +|++. .++|+|.|++||.+....     ...|.+  +|..  .+|.  +.|++ .++|+|.|++
T Consensus         2 ~dideC~~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~-----~~~C~~--~C~~--~~C~--~~C~~-~~~y~C~C~~   67 (118)
T 1dx5_I            2 EPVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPIPHE-----PHRCQM--FCNQ--TACP--ADCDP-NTQASCECPE   67 (118)
T ss_dssp             CCCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEETTE-----EEEEEE--CCCS--SEEE--CEECT-TSTTCEECCT
T ss_pred             CccccCCCCCCCC--CCCCCCCCCEEeECCCCccccCCC-----CCcccc--ccCC--CCCC--CcccC-CCCeEeECCC
Confidence            3789999899984  99999 899999999999976321     112221  2333  5565  58988 5899999999


Q ss_pred             CcccC-CCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCC
Q psy5750         145 GFTGN-GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKD  199 (286)
Q Consensus       145 G~~g~-~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~  199 (286)
                      ||+++ +..|.+        +++|... ++|   +++|+++.++|+|.|++||++.
T Consensus        68 Gy~~~~g~~C~d--------ideC~~~-~~C---~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           68 GYILDDGFICTD--------IDECENG-GFC---SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             TEEEETTTEEEE--------CCHHHHC-SSC---SSEEEECSSSEEEEECSSSSCE
T ss_pred             CccCCCCCcccc--------ccccCCC-CCC---cCeEEeCCCCEEEECCCCCccC
Confidence            99943 488988        9999863 678   6799999999999999999886

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=127.30  Aligned_cols=148  Identities=28%  Similarity=0.698  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccC
Q psy5750          70 PCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN  149 (286)
Q Consensus        70 ~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~  149 (286)
                      +|. ++|.++++|.+   .+.|.|++||.|..|+         .  +.|.   .+|.+++.|+.   .+.|.|++||+| 
T Consensus       150 ~C~-~~C~~~G~C~~---~~~C~C~~G~~G~~C~---------~--~~C~---~~C~~~G~C~~---~~~C~C~~G~~G-  207 (324)
T 2ygq_A          150 ECP-GGCRNGGFCNE---RRICECPDGFHGPHCE---------K--ALCT---PRCMNGGLCVT---PGFCICPPGFYG-  207 (324)
T ss_dssp             CCS-SCCCSSCEECT---TSCEECCTTEESSSSC---------E--ESSS---SCCCTTCEECS---SCCEECCTTCBT-
T ss_pred             CCC-CCCCCCCEECC---CCeEECCCCCcCCCCC---------C--CCCC---CCCCCCCEEcC---CCEEeCCCCccC-
Confidence            443 58999999975   4799999999988776         1  3454   46888999976   468999999999 


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCee
Q psy5750         150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC  229 (286)
Q Consensus       150 ~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C  229 (286)
                       ..|+.         +.|.   .+| .++++|++   .+.|.|++||.|.         .|+ +++|.   ..|.++++|
T Consensus       208 -~~C~~---------~~C~---~~C-~~~G~C~~---~~~C~C~~G~~G~---------~C~-~~~C~---~~C~~~g~C  257 (324)
T 2ygq_A          208 -VNCDK---------ANCS---TTC-FNGGTCFY---PGKCICPPGLEGE---------QCE-ISKCP---QPCRNGGKC  257 (324)
T ss_dssp             -TTTCB---------CCCS---SCC-CSSCCBSC---SSCBCCCTTCCTT---------TTC------------------
T ss_pred             -CCccc---------CcCC---CCC-CCCCeeCC---CCeeeCCCCccCC---------CCC-cCcCC---CcCCCCCEE
Confidence             77864         3464   468 78899976   3699999999998         564 56785   349999999


Q ss_pred             eeCCCCeeeecCCCCcCCCCCcCCCCeeecccccccccceeeee-cccccC
Q psy5750         230 INRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVN-IQEICG  279 (286)
Q Consensus       230 ~n~~g~y~C~C~~Gy~gdg~~C~~~~~c~~~~~~~c~~~~~~~~-~~~~~~  279 (286)
                      ++   .+.|.|++||.|+  .|+ ...|.    ..|..++++++ ++..|.
T Consensus       258 ~~---~~~C~C~~G~~G~--~C~-~~~C~----~~C~~~g~C~~~~~C~C~  298 (324)
T 2ygq_A          258 IG---KSKCKCSKGYQGD--LCS-KPVCE----PGCGAHGTCHEPNKCQCQ  298 (324)
T ss_dssp             ---------------------------------------------------
T ss_pred             CC---CCEEECCCCCcCC--CCc-CCCCC----CCCCCCCEECCCCEeECC
Confidence            84   5899999999988  885 44563    34767777663 333443

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.54  E-value=3.8e-15  Score=104.84  Aligned_cols=78  Identities=31%  Similarity=0.789  Sum_probs=65.3

Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCC
Q psy5750         163 PTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKR  242 (286)
Q Consensus       163 ~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~  242 (286)
                      ++++|+..+++| .+ +.|+++.++|+|.|++||++..    ..+..|+|+|||...+..|. +++|+|++|+|+|.|++
T Consensus         2 dideC~~~~~~C-~~-g~C~n~~g~y~C~C~~Gy~~~~----~~g~~C~dideC~~~~~~C~-~~~C~n~~g~y~C~C~~   74 (86)
T 1lmj_A            2 DIDECRISPDLC-GR-GQCVNTPGDFECKCDEGYESGF----MMMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPP   74 (86)
T ss_dssp             CCCTTTTCSSTT-TT-SCEEEETTEEEECCCSSEEECT----TTSSSEEECCHHHHCSSTTT-TSEEEEETTEEEEESCT
T ss_pred             ccccccCCCCCC-CC-CEEECCCCCEEeeCCCCcCccC----CCCCccCCcccccCCCCcCC-CCEeEcCCCCEEEECcC
Confidence            489999876779 64 5999999999999999998541    11237999999998877786 57999999999999999


Q ss_pred             CCcCC
Q psy5750         243 GFSGD  247 (286)
Q Consensus       243 Gy~gd  247 (286)
                      ||+++
T Consensus        75 G~~~~   79 (86)
T 1lmj_A           75 GHQLS   79 (86)
T ss_dssp             TSCCC
T ss_pred             CcccC
Confidence            99984

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.51  E-value=2.3e-14  Score=99.79  Aligned_cols=73  Identities=32%  Similarity=0.730  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG  243 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~G  243 (286)
                      +++|.. +.+| .+ +.|+++.++|+|.|++||++.+.       .|+|+|||.. .+.|.+ ++|+|++|+|+|.|++|
T Consensus         5 ideC~~-~~~C-~~-g~C~n~~g~y~C~C~~Gy~~~g~-------~C~dideC~~-~~~C~~-~~C~n~~g~y~C~C~~G   72 (82)
T 1emn_A            5 MDECKE-PDVC-KH-GQCINTDGSYRCECPFGYILAGN-------ECVDTDECSV-GNPCGN-GTCKNVIGGFECTCEEG   72 (82)
T ss_dssp             CCSSSS-TTSC-SS-SEECCCSSCCCEECCTTEEEETT-------EEEECCGGGT-CCTTSS-SCEEECSSSEEECCSSS
T ss_pred             cccCCC-CCCc-CC-CEEEecCCCEEEECCCCeECCCC-------ccCCcccccC-CCCCCC-CEeECCCCCEEeECCCC
Confidence            899986 4789 64 89999999999999999985432       8999999985 346975 69999999999999999


Q ss_pred             CcCCC
Q psy5750         244 FSGDG  248 (286)
Q Consensus       244 y~gdg  248 (286)
                      |+|+.
T Consensus        73 ~~g~~   77 (82)
T 1emn_A           73 FEPGP   77 (82)
T ss_dssp             SCCCS
T ss_pred             eEeCC
Confidence            99874

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.42  E-value=8.9e-14  Score=121.58  Aligned_cols=125  Identities=30%  Similarity=0.848  Sum_probs=46.8

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCce
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQC  153 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C  153 (286)
                      .+|.++++|+.   .+.|.|++||.|..|+           .+.|.   .+|.+++.|++.   +.|.|++||+|  ..|
T Consensus       185 ~~C~~~G~C~~---~~~C~C~~G~~G~~C~-----------~~~C~---~~C~~~G~C~~~---~~C~C~~G~~G--~~C  242 (324)
T 2ygq_A          185 PRCMNGGLCVT---PGFCICPPGFYGVNCD-----------KANCS---TTCFNGGTCFYP---GKCICPPGLEG--EQC  242 (324)
T ss_dssp             SCCCTTCEECS---SCCEECCTTCBTTTTC-----------BCCCS---SCCCSSCCBSCS---SCBCCCTTCCT--TTT
T ss_pred             CCCCCCCEEcC---CCEEeCCCCccCCCcc-----------cCcCC---CCCCCCCeeCCC---CeeeCCCCccC--CCC
Confidence            37888999976   4689999999988776           12353   578888999763   68999999998  677


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCC
Q psy5750         154 TEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP  233 (286)
Q Consensus       154 ~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~  233 (286)
                      +         +++|.   .+| .+++.|+.   .++|.|++||.|.         .|+ +++|..   .|.++++|++  
T Consensus       243 ~---------~~~C~---~~C-~~~g~C~~---~~~C~C~~G~~G~---------~C~-~~~C~~---~C~~~g~C~~--  291 (324)
T 2ygq_A          243 E---------ISKCP---QPC-RNGGKCIG---KSKCKCSKGYQGD---------LCS-KPVCEP---GCGAHGTCHE--  291 (324)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C---------cCcCC---CcC-CCCCEECC---CCEEECCCCCcCC---------CCc-CCCCCC---CCCCCCEECC--
Confidence            5         34564   478 77889974   5799999999998         564 567863   4988999986  


Q ss_pred             CCeeeecCCCCcCCCCCcCCC
Q psy5750         234 GTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       234 g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                       .+.|.|++||.|.  .|+..
T Consensus       292 -~~~C~C~~G~~G~--~C~~~  309 (324)
T 2ygq_A          292 -PNKCQCQEGWHGR--HCNKR  309 (324)
T ss_dssp             ---------------------
T ss_pred             -CCEeECCCCCcCC--CCCCC
Confidence             5799999999988  88554

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.41  E-value=7.9e-14  Score=107.91  Aligned_cols=79  Identities=20%  Similarity=0.508  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCee-eeCCCCeeeecCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC-INRPGTYQCQCKR  242 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C-~n~~g~y~C~C~~  242 (286)
                      +++|..  ++| .++++|++..++|.|.|++||+|.         .|+++|+|...++.|.+  +| +|+.|+|.|.|++
T Consensus        48 ideC~~--~pC-~n~g~C~~~~~~y~C~C~~G~~G~---------~C~~~deC~~~~~~C~~--~C~~n~~g~y~C~C~~  113 (146)
T 1x7a_L           48 GDQCEP--NPC-LNGGLCKDDINSYECWCQVGFEGK---------NCELDATCNIKNGRCKQ--FCKTGADSKVLCSCTT  113 (146)
T ss_dssp             --CCSS--CSS-CTTCEEEECSSCEEEECCSSEEST---------TTCEECCTTSGGGSCSS--BCCCCSSSCCCCBCCT
T ss_pred             cCcCCC--CCC-CCCCEeECCCCCEEEecCCCCcCC---------cCCCCccccCCCCCCcC--CCCCCCCCCEEeEcCC
Confidence            899986  789 888999999999999999999987         88889999886667876  89 9999999999999


Q ss_pred             CCc--CCCCCcCCCCe
Q psy5750         243 GFS--GDGFNCEEGKY  256 (286)
Q Consensus       243 Gy~--gdg~~C~~~~~  256 (286)
                      ||.  ++|++|+..+.
T Consensus       114 Gy~l~~dG~~C~~~~~  129 (146)
T 1x7a_L          114 GYRLAPDQKSCKPAVP  129 (146)
T ss_dssp             TEEECTTSSSEEECSS
T ss_pred             CcEeCCCCCcCCCCCC
Confidence            999  56778866543

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.40  E-value=1.7e-13  Score=97.24  Aligned_cols=83  Identities=28%  Similarity=0.572  Sum_probs=67.5

Q ss_pred             CeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccc--cCC
Q psy5750         137 SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCT--DVD  214 (286)
Q Consensus       137 ~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~--d~d  214 (286)
                      +|+|.|.+||+|  ..|.         +++|..  .+       |++..++|+|.|++||+           .|+  ++|
T Consensus         1 sy~C~C~~g~~g--~~c~---------~~~c~~--~p-------C~n~~~~y~C~C~~G~~-----------~C~~~~~~   49 (91)
T 1tpg_A            1 SYQVICRDEKTQ--MIYQ---------QHQSWL--RP-------VLRSNRVEYCWCNSGRA-----------QCHSVPVK   49 (91)
T ss_dssp             CCCCCCBCSSSC--CBCC---------SSCEEE--EE-------CSSSSCEEEEECSSSCC-----------BCCEECEE
T ss_pred             CeeeECCCCCcC--CeEC---------CCcccC--Cc-------cccCCCCcEeECCCCCc-----------ccccCcCC
Confidence            589999999998  6663         566654  33       45667899999999996           353  789


Q ss_pred             CcCCCCCCCCCCCeeeeCC--CCeeeecCCCCcCCCCCcCCC
Q psy5750         215 ECMNYPPICNNNADCINRP--GTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       215 eC~~~~~~C~~~~~C~n~~--g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      +|...|  |.++++|++..  ++|.|.|++||.|.  .|+..
T Consensus        50 ~C~~~p--C~ngg~C~~~~~~~~~~C~C~~G~~G~--~Ce~~   87 (91)
T 1tpg_A           50 SCSEPR--CFNGGTCQQALYFSDFVCQCPEGFAGK--SCEID   87 (91)
T ss_dssp             ECSSCC--SCTTCEEEEESSSSCEEEECCTTCBSS--SCCBC
T ss_pred             cccCCC--CCCCCEeecCCCCCCeEeECCCCCcCC--cCCcC
Confidence            998765  99999999987  99999999999987  89644

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.40  E-value=3.9e-13  Score=93.56  Aligned_cols=76  Identities=32%  Similarity=0.867  Sum_probs=66.2

Q ss_pred             CCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCcee
Q psy5750         111 GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC  190 (286)
Q Consensus       111 ~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C  190 (286)
                      +|+++|+|.. .++|.+ +.|+++.++|+|.|++||++++..|.+        +++|... .+| .+ ++|+++.++|+|
T Consensus         1 sC~dideC~~-~~~C~~-g~C~n~~g~y~C~C~~Gy~~~g~~C~d--------ideC~~~-~~C-~~-~~C~n~~g~y~C   67 (82)
T 1emn_A            1 SAVDMDECKE-PDVCKH-GQCINTDGSYRCECPFGYILAGNECVD--------TDECSVG-NPC-GN-GTCKNVIGGFEC   67 (82)
T ss_dssp             CCCCCCSSSS-TTSCSS-SEECCCSSCCCEECCTTEEEETTEEEE--------CCGGGTC-CTT-SS-SCEEECSSSEEE
T ss_pred             CCCccccCCC-CCCcCC-CEEEecCCCEEEECCCCeECCCCccCC--------cccccCC-CCC-CC-CEeECCCCCEEe
Confidence            3688999986 478975 899999999999999999966699998        9999852 688 64 699999999999


Q ss_pred             eCCCCCCCC
Q psy5750         191 NCDPGYQKD  199 (286)
Q Consensus       191 ~C~~G~~g~  199 (286)
                      .|++||++.
T Consensus        68 ~C~~G~~g~   76 (82)
T 1emn_A           68 TCEEGFEPG   76 (82)
T ss_dssp             CCSSSSCCC
T ss_pred             ECCCCeEeC
Confidence            999999987

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.38  E-value=3.5e-16  Score=131.04  Aligned_cols=156  Identities=11%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             eeeeCCCCCeEecCCCccc---ccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceeccc
Q psy5750          81 SCIVEDDKPTCICNRGFQQ---LYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEIT  157 (286)
Q Consensus        81 ~C~~~~g~~~C~C~~g~~~---~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~  157 (286)
                      ++.|.+++|.+.|.+|..+   ..++         .++.++.   .+|.++++|++..++|.|.|+.||+|  ..|+...
T Consensus         5 ~~~n~~Gg~s~~~~pgg~~~~g~~~~---------~n~~~~~---~~c~ngG~C~~g~~~y~C~Cp~Gf~G--~~Ce~ni   70 (267)
T 4fbr_A            5 LVQNQWGGSQATWNPGGLWLIGARDK---------QNVVALD---IKSDDGGKTLKGTMTYNGEGPIGFRG--TLSSANN   70 (267)
T ss_dssp             EEEEECSSTTSCCEEEEEEECCCCSS---------CCEEEEE---EECSSTTSEEEEEEEETTSCCEEEEE--EECSTTE
T ss_pred             eEeecCCcccCCcCCCCceeeccccc---------cccccCC---CCcCCCCeecCCCCCeEEeCCCCccc--ccccccc
Confidence            5677889999999988443   3222         2333333   47889999999999999999999998  5553311


Q ss_pred             CC----------------------CCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCc-----------
Q psy5750         158 VP----------------------QTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDR-----------  204 (286)
Q Consensus       158 ~~----------------------~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~-----------  204 (286)
                      ..                      .....++|+.  .+| .++++|++...+|+|+|+.||+|..+...           
T Consensus        71 ~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s--~pC-~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~  147 (267)
T 4fbr_A           71 YTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVS--IKS-NDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGS  147 (267)
T ss_dssp             EEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEE--EEC-SSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSST
T ss_pred             cccccccCcCCCcccCCCeeeccCccccccccCC--CCC-CCCCEEecCCccEEeeCCCCccccCCCCCcccccccCCcC
Confidence            00                      1112345666  678 88999999999999999999999865421           


Q ss_pred             ----------ccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCCCee
Q psy5750         205 ----------RVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYC  257 (286)
Q Consensus       205 ----------~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~~~c  257 (286)
                                ..+..|...+.|...  .|.++++|++..++|+|.|++||+|.  .|+...++
T Consensus       148 s~pC~ngg~c~~G~~c~~~i~c~~~--~c~ngg~C~dg~~~y~C~Cp~Gf~G~--~c~~~i~e  206 (267)
T 4fbr_A          148 AAPWHSGGVWVLGTRGKQNVINVDA--KSNDGGKTLSGTMTYNGEGPIGFRGT--LTSPDTYT  206 (267)
T ss_dssp             TSCCEEEEEEECCSSTTSCEEEEEE--ECSSTTSEEEEEEEETTSCCEEEEEE--EEETTEEE
T ss_pred             CccccCCcceecccccccccccCCC--CCCCCCEeeCCCCCeEEeCCCCcccc--ccccccce
Confidence                      123334222233333  38999999999999999999999987  88777765

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.33  E-value=2.1e-13  Score=99.76  Aligned_cols=76  Identities=36%  Similarity=0.810  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG  243 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~G  243 (286)
                      +++|...+..|   .+.|+++.++|+|.|++||++..      +..|+|||||.. ++.|.  ++|+|++|+|.|.|++|
T Consensus        29 ~neC~~~~~~C---~~~C~n~~g~y~C~C~~Gy~g~~------g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~G   96 (107)
T 2w2n_E           29 TNECLDNNGGC---SYVCNDLKIGYECLCPDGFQLVA------QRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEG   96 (107)
T ss_dssp             CCGGGTGGGGC---SSEEECCSBSCEEECCTTCEEET------TTEEEC-------------------------------
T ss_pred             CccCcCCCCCC---CCEeEeCCCCeEEECCCCccccC------CCccccccccCC-CCCcC--CeeecCCCCEEEECCCC
Confidence            78888754567   36899999999999999999831      127999999974 35686  69999999999999999


Q ss_pred             CcCC--CCCc
Q psy5750         244 FSGD--GFNC  251 (286)
Q Consensus       244 y~gd--g~~C  251 (286)
                      |.++  +++|
T Consensus        97 y~~~~d~~~C  106 (107)
T 2w2n_E           97 FQLDPHTKAC  106 (107)
T ss_dssp             ----------
T ss_pred             ceECCCCCcc
Confidence            9975  4444

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.33  E-value=2.1e-11  Score=115.79  Aligned_cols=128  Identities=27%  Similarity=0.695  Sum_probs=98.6

Q ss_pred             CCCCC----CCCCCCCeeeeCCCCCeEecC----CCcccccccccCCCCCCCccCCCcCCC-CCCCCCCCeeecCCCCee
Q psy5750          69 DPCKN----FFCVANSSCIVEDDKPTCICN----RGFQQLYSEDRLQDDFGCFDINECNAG-TDLCHKNAMCFNEIGSYS  139 (286)
Q Consensus        69 ~~C~~----~~C~~~~~C~~~~g~~~C~C~----~g~~~~~c~~~~~~~~~C~~~~~C~~~-~~~C~~~~~C~~~~g~~~  139 (286)
                      ++|..    .+|.++++|++    +.|.|.    +||.|..|+         .++++|... ..+|.+++.|.+    +.
T Consensus       484 ~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~~~~Gy~G~~Ce---------~~~~~C~~~~~~~C~~~G~C~~----g~  546 (690)
T 3fcs_B          484 DECSPREGQPVCSQRGECLC----GQCVCHSSDFGKITGKYCE---------CDDFSCVRYKGEMCSGHGQCSC----GD  546 (690)
T ss_dssp             CCCSSSSSSCGGGGSEEECS----SSEEECCCSSCCCBSTTSC---------BCSSCCCBSSSSBGGGSEEEET----TE
T ss_pred             CcCCCCCCCCCCCCCCEEEC----CeeEeecCCCCCeeCCCcC---------cccCcCcCCCCCCCCCCCEecC----Ce
Confidence            56775    35999999984    589999    999988887         456677631 247988999987    69


Q ss_pred             EeCCCCcccCCCcee--cccCCCCCCCCCCCCCC-CCCCCCCCccccCCCCceeeC-CCCCCCCCCCCcccCCccccCCC
Q psy5750         140 CQCRPGFTGNGHQCT--EITVPQTGPTSPCESDP-RACNPPHSTCTNLTDYRTCNC-DPGYQKDYLDDRRVAFVCTDVDE  215 (286)
Q Consensus       140 C~C~~G~~g~~~~C~--~~~~~~~~~~~~C~~~~-~~C~~~~~~C~~~~g~~~C~C-~~G~~g~~~~~~~~~~~C~d~de  215 (286)
                      |.|.+||+|  ..|+  .       .++.|.... .+| .+++.|++.    .|.| .+||.|.         .|+.-..
T Consensus       547 C~C~~Gy~G--~~CeC~~-------~~~~C~~~~g~~C-~~~G~C~~g----~C~C~~~Gy~G~---------~Ce~C~~  603 (690)
T 3fcs_B          547 CLCDSDWTG--YYCNCTT-------RTDTCMSSNGLLC-SGRGKCECG----SCVCIQPGSYGD---------TCEKCPT  603 (690)
T ss_dssp             EEECTTEES--SSSCEEC-------CCTTTBCTTSSBT-SSSCEEETT----EEECCSTTCBST---------TSCBCTT
T ss_pred             eECcCCCcC--CCCccCC-------CCCcccCCCCCCC-CCCCEEeCC----EEECCCCCccCC---------CcCcCCC
Confidence            999999999  6775  2       267787432 578 888999763    9999 9999998         5643345


Q ss_pred             cCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         216 CMNYPPICNNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       216 C~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                      |   +..|.+++.|++        |..||+|.
T Consensus       604 C---~~~C~~~g~Cv~--------C~~g~tG~  624 (690)
T 3fcs_B          604 C---PDACTFKKECVE--------CKKFDRGA  624 (690)
T ss_dssp             S---CCTTTSCCGGGT--------TTTTCCSS
T ss_pred             C---CCCCCCCCCccc--------CCCCCccC
Confidence            6   345999999985        99999997

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.31  E-value=1.7e-12  Score=100.43  Aligned_cols=87  Identities=25%  Similarity=0.629  Sum_probs=68.0

Q ss_pred             CCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCcc-ccCCCCc
Q psy5750         110 FGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTC-TNLTDYR  188 (286)
Q Consensus       110 ~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C-~~~~g~~  188 (286)
                      ..|.++|+|..  ++|.++++|++..++|.|.|++||+|  ..|.+        +++|...+.+| ..  .| ++..++|
T Consensus        43 ~~c~dideC~~--~pC~n~g~C~~~~~~y~C~C~~G~~G--~~C~~--------~deC~~~~~~C-~~--~C~~n~~g~y  107 (146)
T 1x7a_L           43 KQYVDGDQCEP--NPCLNGGLCKDDINSYECWCQVGFEG--KNCEL--------DATCNIKNGRC-KQ--FCKTGADSKV  107 (146)
T ss_dssp             -------CCSS--CSSCTTCEEEECSSCEEEECCSSEES--TTTCE--------ECCTTSGGGSC-SS--BCCCCSSSCC
T ss_pred             ccCCCcCcCCC--CCCCCCCEeECCCCCEEEecCCCCcC--CcCCC--------CccccCCCCCC-cC--CCCCCCCCCE
Confidence            35789999997  89999999999999999999999998  88988        78998755677 43  89 9999999


Q ss_pred             eeeCCCCCCCCCCCCcccCCccccCCCc
Q psy5750         189 TCNCDPGYQKDYLDDRRVAFVCTDVDEC  216 (286)
Q Consensus       189 ~C~C~~G~~g~~~~~~~~~~~C~d~deC  216 (286)
                      +|.|++||++..     ++..|++++++
T Consensus       108 ~C~C~~Gy~l~~-----dG~~C~~~~~~  130 (146)
T 1x7a_L          108 LCSCTTGYRLAP-----DQKSCKPAVPF  130 (146)
T ss_dssp             CCBCCTTEEECT-----TSSSEEECSSS
T ss_pred             EeEcCCCcEeCC-----CCCcCCCCCCC
Confidence            999999999542     23378888765

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.31  E-value=1.2e-12  Score=91.94  Aligned_cols=75  Identities=33%  Similarity=0.873  Sum_probs=64.3

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccC---CCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCcee
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN---GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC  190 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~---~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C  190 (286)
                      +||+|...+++|.+ +.|+++.++|+|.|++||++.   +..|.+        +++|...+..| . +++|+++.++|+|
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~d--------ideC~~~~~~C-~-~~~C~n~~g~y~C   70 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCMD--------IDECQRDPLLC-R-GGVCHNTEGSYRC   70 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTEEEECCCSSEEECTTTSSSEEE--------CCHHHHCSSTT-T-TSEEEEETTEEEE
T ss_pred             ccccccCCCCCCCC-CEEECCCCCEEeeCCCCcCccCCCCCccCC--------cccccCCCCcC-C-CCEeEcCCCCEEE
Confidence            68999885566964 599999999999999999843   688998        99998755567 4 5799999999999


Q ss_pred             eCCCCCCCC
Q psy5750         191 NCDPGYQKD  199 (286)
Q Consensus       191 ~C~~G~~g~  199 (286)
                      .|++||++.
T Consensus        71 ~C~~G~~~~   79 (86)
T 1lmj_A           71 ECPPGHQLS   79 (86)
T ss_dssp             ESCTTSCCC
T ss_pred             ECcCCcccC
Confidence            999999986

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.29  E-value=3.7e-12  Score=120.73  Aligned_cols=161  Identities=22%  Similarity=0.527  Sum_probs=109.7

Q ss_pred             CCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCcc-CCCcCCC--CCCCCCCCeeecCCCCeeEeCC-----
Q psy5750          72 KNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFD-INECNAG--TDLCHKNAMCFNEIGSYSCQCR-----  143 (286)
Q Consensus        72 ~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~-~~~C~~~--~~~C~~~~~C~~~~g~~~C~C~-----  143 (286)
                      .+.+|.++|+|..    ..|.|.+||.|..|+-... ...-.. ...|...  ..+|.+++.|+..    .|.|.     
T Consensus       433 ~s~~Cs~~G~C~~----g~C~C~~Gy~G~~Cec~~~-~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G----~C~C~~~~~~  503 (687)
T 3k6s_B          433 DRSLCHGKGFLEC----GICRCDTGYIGKNCECQTQ-GRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVP  503 (687)
T ss_dssp             CSSTGGGSEEESS----SSEEECSSEESTTSCEESS-SCCCSGGGSTTSSSTTSCGGGSSEEEETT----EEEECCCCST
T ss_pred             CCCCCCCCCEEeC----CEeEcCCCCcCCcccccCC-cCCccccCCCCCCCCCCCcCCCCCEEeCC----EEEcCCCCCC
Confidence            4468888899973    3799999999998871100 000000 1135531  1458889999853    89999     


Q ss_pred             -CCcccCCCceecccCCCCCCCCCCCCC-CCCCCCC--CCccccCCCCceeeCCCCCCCCCCCCcccCCcc-ccCCCcCC
Q psy5750         144 -PGFTGNGHQCTEITVPQTGPTSPCESD-PRACNPP--HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMN  218 (286)
Q Consensus       144 -~G~~g~~~~C~~~~~~~~~~~~~C~~~-~~~C~~~--~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C-~d~deC~~  218 (286)
                       +||.|  ..|+-       +...|... ..+| .+  ++.|...    .|.|.+||+|..+       .| .+++.|..
T Consensus       504 ~~G~~G--~~Ce~-------~~~~C~~~~~~~C-~~~~~G~C~~g----~C~C~~G~~G~~C-------ec~~~~~~C~~  562 (687)
T 3k6s_B          504 GKLIYG--QYCEC-------DTINCERYNGQVC-GGPGRGLCFCG----KCRCHPGFEGSAC-------QCERTTEGCLN  562 (687)
T ss_dssp             TCCEES--TTSCE-------ESSCSCEETTEET-SHHHHEEEETT----EEEECTTCCSTTS-------CSCCSSCTTBC
T ss_pred             CCCccc--ccccc-------ccccccCCCCcCc-CCCCCCeEECC----EEEcCCCCcCCCC-------ccCCCCCCCCC
Confidence             99999  77862       14566531 1357 66  7888752    8999999999955       33 24678875


Q ss_pred             C-CCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCCCeeecccccccccceeee
Q psy5750         219 Y-PPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVV  272 (286)
Q Consensus       219 ~-~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~~~c~~~~~~~c~~~~~~~  272 (286)
                      . ...|.++|.|.+    +.|.|++||.|.  .|+.-..|.    ..|..++.|+
T Consensus       563 ~~g~~Cs~~G~C~~----g~C~C~~Gy~G~--~Ce~c~~C~----~~C~~~g~Cv  607 (687)
T 3k6s_B          563 PRRVECSGRGRCRC----NVCECHSGYQLP--LCQECPGCP----SPCGKYISCA  607 (687)
T ss_dssp             TTCSBTSSSCCBCS----SCBCCSTTCCTT--TTCCCTTSC----CCCTTTHHHH
T ss_pred             CCCCCCCCCCcCCC----CEEECCCCCcCC--CCCCCCCCC----cccCCCCCCC
Confidence            3 235999999986    579999999998  886644452    3577766655

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.28  E-value=2.6e-12  Score=90.36  Aligned_cols=72  Identities=33%  Similarity=0.903  Sum_probs=57.8

Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecC-
Q psy5750         163 PTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCK-  241 (286)
Q Consensus       163 ~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~-  241 (286)
                      ++++|+..+.+|  +++.|++..++|+|.|++||++..     ++..|+++|||...  .|.  ++|+|++|+|.|.|+ 
T Consensus         2 dideC~~~~~~C--~~~~C~n~~g~y~C~C~~G~~~~~-----~g~~C~dideC~~~--~C~--~~C~n~~g~y~C~C~g   70 (87)
T 1z6c_A            2 DVDECSLKPSIC--GTAVCKNIPGDFECECPEGYRYNL-----KSKSCEDIDECSEN--MCA--QLCVNYPGGYTCYCDG   70 (87)
T ss_dssp             CSCSSSSSSSSB--TTSSCCCBTTBCCCSSSTTCEEET-----TTTEEECCCHHHHS--CCS--SEECCCSSSCCEECCS
T ss_pred             ccccccCCCCCC--CCCEeECCCCCEEEECCCCceECC-----CCCcCCCcCeeCCC--CCC--CEEEccCCCEEEECCC
Confidence            378998865557  368999999999999999999642     12389999999864  486  699999999999996 


Q ss_pred             -CCCc
Q psy5750         242 -RGFS  245 (286)
Q Consensus       242 -~Gy~  245 (286)
                       +||.
T Consensus        71 ~~G~~   75 (87)
T 1z6c_A           71 KKGFK   75 (87)
T ss_dssp             SSCCB
T ss_pred             CcCCc
Confidence             4554

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.28  E-value=5.2e-13  Score=107.64  Aligned_cols=77  Identities=23%  Similarity=0.605  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcccc-C-CCcCCCCCCCCCCCeeeeCCCCeeeecC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTD-V-DECMNYPPICNNNADCINRPGTYQCQCK  241 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d-~-deC~~~~~~C~~~~~C~n~~g~y~C~C~  241 (286)
                      +++|..  .+| .+++.|++..++|.|.|++||+|.         .|++ + |+|...++.|.+  +|+|..|+|.|.|+
T Consensus        42 ideC~~--~pC-~ngg~C~n~~g~y~C~C~~Gf~G~---------~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~  107 (195)
T 1nfu_B           42 GDQCET--SPC-QNQGKCKDGLGEYTCTCLEGFEGK---------NCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCA  107 (195)
T ss_dssp             ---------------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECC
T ss_pred             CcccCC--CCC-CCCCEeECCCCCeeEeCCCCceec---------cccccccccccCCCCCCCC--EeECCCCCeEEECC
Confidence            899986  789 889999999999999999999987         7865 6 899876667876  99999999999999


Q ss_pred             CCCc--CCCCCcCCC
Q psy5750         242 RGFS--GDGFNCEEG  254 (286)
Q Consensus       242 ~Gy~--gdg~~C~~~  254 (286)
                      +||.  ++|+.|+..
T Consensus       108 ~Gy~l~~dG~~C~~~  122 (195)
T 1nfu_B          108 RGYTLADNGKACIPT  122 (195)
T ss_dssp             TTEEECTTSSCEEES
T ss_pred             CCceeCCCCCccccC
Confidence            9999  667788654

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.28  E-value=1.8e-12  Score=91.88  Aligned_cols=78  Identities=19%  Similarity=0.404  Sum_probs=63.5

Q ss_pred             CCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCcee--cccCCCCCCCC
Q psy5750          88 KPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT--EITVPQTGPTS  165 (286)
Q Consensus        88 ~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~--~~~~~~~~~~~  165 (286)
                      +|+|.|.+||.|..+           ++++|..  .+      |++..++|+|.|++||+    .|+  +        ++
T Consensus         1 sy~C~C~~g~~g~~c-----------~~~~c~~--~p------C~n~~~~y~C~C~~G~~----~C~~~~--------~~   49 (91)
T 1tpg_A            1 SYQVICRDEKTQMIY-----------QQHQSWL--RP------VLRSNRVEYCWCNSGRA----QCHSVP--------VK   49 (91)
T ss_dssp             CCCCCCBCSSSCCBC-----------CSSCEEE--EE------CSSSSCEEEEECSSSCC----BCCEEC--------EE
T ss_pred             CeeeECCCCCcCCeE-----------CCCcccC--Cc------cccCCCCcEeECCCCCc----ccccCc--------CC
Confidence            589999999986533           3667765  44      44568899999999996    675  4        78


Q ss_pred             CCCCCCCCCCCCCCccccCC--CCceeeCCCCCCCC
Q psy5750         166 PCESDPRACNPPHSTCTNLT--DYRTCNCDPGYQKD  199 (286)
Q Consensus       166 ~C~~~~~~C~~~~~~C~~~~--g~~~C~C~~G~~g~  199 (286)
                      +|..  .+| .++++|++..  ++|.|.|++||.|.
T Consensus        50 ~C~~--~pC-~ngg~C~~~~~~~~~~C~C~~G~~G~   82 (91)
T 1tpg_A           50 SCSE--PRC-FNGGTCQQALYFSDFVCQCPEGFAGK   82 (91)
T ss_dssp             ECSS--CCS-CTTCEEEEESSSSCEEEECCTTCBSS
T ss_pred             cccC--CCC-CCCCEeecCCCCCCeEeECCCCCcCC
Confidence            8987  689 8899999876  89999999999998

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.27  E-value=6.6e-13  Score=101.29  Aligned_cols=77  Identities=23%  Similarity=0.605  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcccc-C-CCcCCCCCCCCCCCeeeeCCCCeeeecC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTD-V-DECMNYPPICNNNADCINRPGTYQCQCK  241 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d-~-deC~~~~~~C~~~~~C~n~~g~y~C~C~  241 (286)
                      +++|..  .+| .++++|++..++|+|.|++||+|.         .|++ + |+|...++.|.+  +|+|+.|+|.|.|+
T Consensus        42 ~d~C~~--~pC-~n~g~C~~~~~~y~C~C~~G~~G~---------~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~  107 (134)
T 2vh0_B           42 GDQCET--SPC-QNQGKCKDGLGEYTCTCLEGFEGK---------NCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCA  107 (134)
T ss_dssp             ---------------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECC
T ss_pred             cCcCCC--CCC-CCcCCcccCCCCEEeeCCCCccCC---------ccccCCCCccccCCCCCCC--EeECCCCCEEEECC
Confidence            889986  789 888999999999999999999987         7866 6 899876666876  99999999999999


Q ss_pred             CCCc--CCCCCcCCC
Q psy5750         242 RGFS--GDGFNCEEG  254 (286)
Q Consensus       242 ~Gy~--gdg~~C~~~  254 (286)
                      +||.  ++|+.|+..
T Consensus       108 ~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B          108 RGYTLADNGKACIPT  122 (134)
T ss_dssp             TTEEECTTSSCEEES
T ss_pred             CCcEECCCCCccCcC
Confidence            9999  567788544

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.26  E-value=5.3e-12  Score=93.50  Aligned_cols=79  Identities=24%  Similarity=0.593  Sum_probs=61.1

Q ss_pred             CCCCCCCC------CCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccC---CCcCCCCCCCCCCCeeeeCCC
Q psy5750         164 TSPCESDP------RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV---DECMNYPPICNNNADCINRPG  234 (286)
Q Consensus       164 ~~~C~~~~------~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~---deC~~~~~~C~~~~~C~n~~g  234 (286)
                      +++|...+      +.| .++++|++..++|+|.|++||+|.         .|+++   ++|...+..|.+  +|+|+.+
T Consensus         6 ~d~C~~~p~~~~C~~~C-~~~g~C~~~~~~y~C~C~~G~~G~---------~C~~~~~~~~C~~~~~~C~~--~C~n~~g   73 (114)
T 1aut_L            6 GDQCLVLPLEHPCASLC-CGHGTCIDGIGSFSCDCRSGWEGR---------FCQREVSFLNCSLDNGGCTH--YCLEEVG   73 (114)
T ss_dssp             --CCCCCSSCCSSSSTT-TTSEEECCCSSCCCEEECTTEEST---------TSCEECCSSSSSSGGGGCSS--EEEECSS
T ss_pred             cccccCCCccccccccC-CCcCCCCCCCCCcEeeCCCCCcCC---------CcCcCCcCCcCcCCCCCCCC--EeECCCC
Confidence            66777632      238 788999999999999999999998         56553   578765555764  9999999


Q ss_pred             CeeeecCCCCcC--CCCCcCCC
Q psy5750         235 TYQCQCKRGFSG--DGFNCEEG  254 (286)
Q Consensus       235 ~y~C~C~~Gy~g--dg~~C~~~  254 (286)
                      +|+|.|++||++  ++++|+..
T Consensus        74 ~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           74 WRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             SEEEECCTTEEECTTSSCEEEC
T ss_pred             CEEeECCCCeeECCCCCccCcC
Confidence            999999999995  56677543

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.24  E-value=1.1e-11  Score=95.44  Aligned_cols=81  Identities=23%  Similarity=0.512  Sum_probs=64.9

Q ss_pred             CcCCCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCC---eeecCCC-Cee
Q psy5750          64 STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNA---MCFNEIG-SYS  139 (286)
Q Consensus        64 ~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~---~C~~~~g-~~~  139 (286)
                      .+.++++|..+||.++++|++..++|+|.|++||.|..|+         .++++|..  .++.+++   .|++..+ +|+
T Consensus        43 ~c~did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~---------~~~~~c~~--c~~~~~~C~~~C~~~~g~~y~  111 (142)
T 2c4f_L           43 SYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE---------THKDDQLI--CVNENGGCEQYCSDHTGTKRS  111 (142)
T ss_dssp             HHTTCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC---------EEGGGCCS--TTTGGGGCSSEEECCTTSCCE
T ss_pred             cCCccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccc---------cCcccccc--ccCCCCCccCEeECCCCCCEE
Confidence            3568999999999999999999999999999999977665         33555432  2233333   8999999 999


Q ss_pred             EeCCCCcc--cCCCceec
Q psy5750         140 CQCRPGFT--GNGHQCTE  155 (286)
Q Consensus       140 C~C~~G~~--g~~~~C~~  155 (286)
                      |.|++||.  +++..|.+
T Consensus       112 C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L          112 CRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             EECCTTEEECTTSSCEEE
T ss_pred             EECCCCceECCCCCCCCC
Confidence            99999999  45688987

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.23  E-value=5.3e-12  Score=88.78  Aligned_cols=70  Identities=30%  Similarity=0.723  Sum_probs=59.6

Q ss_pred             CCCCCCCCC--CCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCC
Q psy5750          67 NDDPCKNFF--CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRP  144 (286)
Q Consensus        67 ~~~~C~~~~--C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~  144 (286)
                      ++|+|...|  | ++++|++..++|+|.|++||.+.  .    ++..|+++++|..  ++|.  +.|+++.++|+|.|+ 
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~--~----~g~~C~dideC~~--~~C~--~~C~n~~g~y~C~C~-   69 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYN--L----KSKSCEDIDECSE--NMCA--QLCVNYPGGYTCYCD-   69 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEE--T----TTTEEECCCHHHH--SCCS--SEECCCSSSCCEECC-
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceEC--C----CCCcCCCcCeeCC--CCCC--CEEEccCCCEEEECC-
Confidence            688999866  8 78999999999999999999865  2    3667899999986  7897  699999999999996 


Q ss_pred             Cccc
Q psy5750         145 GFTG  148 (286)
Q Consensus       145 G~~g  148 (286)
                      ||.|
T Consensus        70 g~~G   73 (87)
T 1z6c_A           70 GKKG   73 (87)
T ss_dssp             SSSC
T ss_pred             CCcC
Confidence            4444

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.21  E-value=8.8e-13  Score=104.02  Aligned_cols=126  Identities=28%  Similarity=0.571  Sum_probs=86.9

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc--CCCceecccCCCCCCCCC--CCCCCCCCC-CCCCccccCCC-
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG--NGHQCTEITVPQTGPTSP--CESDPRACN-PPHSTCTNLTD-  186 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g--~~~~C~~~~~~~~~~~~~--C~~~~~~C~-~~~~~C~~~~g-  186 (286)
                      +|||||.. .++|. +++|+++.++|+|.|++||++  ++..|++        +++  |.....+|. ..++.|++..+ 
T Consensus         1 ~dideC~~-~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d--------~~~~~C~~~~~~c~~~~~~~C~~~~~~   70 (162)
T 1uzk_A            1 TDVNECLD-PTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVD--------TRSGNCYLDIRPRGDNGDTACSNEIGV   70 (162)
T ss_dssp             CCCCGGGS-TTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEEC--------CCCEEEEEEC----------CEEEEEE
T ss_pred             CccccCCC-CCCCC-CCEeECCCCCEEEeCCCCCeECCCCCcccC--------CCCCcccCCCcccCCCCCCcccCCcCC
Confidence            36899984 37896 689999999999999999995  3589987        665  765433330 23678988776 


Q ss_pred             ---CceeeCCCCCCC-CCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCC--CCcCC--CCCcCCCCeee
Q psy5750         187 ---YRTCNCDPGYQK-DYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKR--GFSGD--GFNCEEGKYCL  258 (286)
Q Consensus       187 ---~~~C~C~~G~~g-~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~--Gy~gd--g~~C~~~~~c~  258 (286)
                         +|.|.|++||.. .         .|.          .|..     +..++|.|.|++  ||+++  ++.|+++++|.
T Consensus        71 ~~~~~~C~C~~G~~~~~---------~C~----------~C~~-----~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~  126 (162)
T 1uzk_A           71 GVSKASCCCSLGKAWGT---------PCE----------MCPA-----VNTSEYKILCPGGEGFRPNPITVILEDIDECQ  126 (162)
T ss_dssp             EECHHHHHTTTCCEETT---------TTE----------ECCC-----TTSHHHHHHCTTCTTEEECTTTCCEEECCHHH
T ss_pred             cccCceeeCCCCCCcCC---------Ccc----------cCCC-----CCCCCceeECCCCCCcccCCCCCccCcccccc
Confidence               899999999973 3         332          0221     356789999998  99986  46788888886


Q ss_pred             cccccccccceeeeec
Q psy5750         259 VVGITLCKMYLEVVNI  274 (286)
Q Consensus       259 ~~~~~~c~~~~~~~~~  274 (286)
                      .. ...|.. +++++.
T Consensus       127 ~~-~~~C~~-g~C~n~  140 (162)
T 1uzk_A          127 EL-PGLCQG-GKCINT  140 (162)
T ss_dssp             HC-GGGGBT-SEEEEC
T ss_pred             CC-CCCcCC-CEeEcC
Confidence            52 345764 566654

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.21  E-value=2.9e-11  Score=89.48  Aligned_cols=81  Identities=25%  Similarity=0.657  Sum_probs=62.0

Q ss_pred             CCCCCCCCCC--------CCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCC
Q psy5750          66 VNDDPCKNFF--------CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGS  137 (286)
Q Consensus        66 ~~~~~C~~~~--------C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~  137 (286)
                      .++|+|..+|        |.++++|++..++|+|.|++||.|..|+..       .++++|......|..  +|+++.++
T Consensus         4 ~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~-------~~~~~C~~~~~~C~~--~C~n~~g~   74 (114)
T 1aut_L            4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE-------VSFLNCSLDNGGCTH--YCLEEVGW   74 (114)
T ss_dssp             ----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEE-------CCSSSSSSGGGGCSS--EEEECSSS
T ss_pred             eecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcC-------CcCCcCcCCCCCCCC--EeECCCCC
Confidence            4788999888        999999999999999999999998766510       123578753355654  89999999


Q ss_pred             eeEeCCCCccc--CCCceec
Q psy5750         138 YSCQCRPGFTG--NGHQCTE  155 (286)
Q Consensus       138 ~~C~C~~G~~g--~~~~C~~  155 (286)
                      |+|.|++||++  ++..|.+
T Consensus        75 y~C~C~~G~~~~~~g~~C~~   94 (114)
T 1aut_L           75 RRCSCAPGYKLGDDLLQCHP   94 (114)
T ss_dssp             EEEECCTTEEECTTSSCEEE
T ss_pred             EEeECCCCeeECCCCCccCc
Confidence            99999999994  4577876

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.19  E-value=3.7e-12  Score=102.66  Aligned_cols=81  Identities=27%  Similarity=0.605  Sum_probs=31.9

Q ss_pred             CcCCCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccC-CCcCCCCCCCCCCCeeecCCCCeeEeC
Q psy5750          64 STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDI-NECNAGTDLCHKNAMCFNEIGSYSCQC  142 (286)
Q Consensus        64 ~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~-~~C~~~~~~C~~~~~C~~~~g~~~C~C  142 (286)
                      .+.++++|..+||.++++|++..++|.|.|++||.|..|+         .++ ++|.....+|.+  .|++..++|.|.|
T Consensus        38 ~c~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce---------~~i~deC~~~~~~C~~--~C~n~~gsy~C~C  106 (195)
T 1nfu_B           38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE---------LFTRKLCSLDNGDCDQ--FCHEEQNSVVCSC  106 (195)
T ss_dssp             ----------------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEEC
T ss_pred             cCCCCcccCCCCCCCCCEeECCCCCeeEeCCCCceecccc---------ccccccccCCCCCCCC--EeECCCCCeEEEC
Confidence            4678999999999999999999999999999999977665         346 788864467876  9999999999999


Q ss_pred             CCCcc--cCCCceec
Q psy5750         143 RPGFT--GNGHQCTE  155 (286)
Q Consensus       143 ~~G~~--g~~~~C~~  155 (286)
                      ++||.  +++..|.+
T Consensus       107 ~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B          107 ARGYTLADNGKACIP  121 (195)
T ss_dssp             CTTEEECTTSSCEEE
T ss_pred             CCCceeCCCCCcccc
Confidence            99999  45588987

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.19  E-value=5.9e-12  Score=99.92  Aligned_cols=141  Identities=23%  Similarity=0.574  Sum_probs=93.6

Q ss_pred             CCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCC
Q psy5750          86 DDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTS  165 (286)
Q Consensus        86 ~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~  165 (286)
                      ...+.|.|++||.|..|+.            +|.. ...|..++.|..   ...|.|.+||+|  ..|+.         +
T Consensus        14 ~~~~~c~C~~g~~G~~C~~------------~C~~-~~~c~~~g~C~~---~g~C~C~~G~~G--~~C~~---------~   66 (169)
T 2vj2_A           14 EGRSAVTCDDYYYGFGCNK------------FCRP-RDDFFGHYACDQ---NGNKTCMEGWMG--PECNR---------A   66 (169)
T ss_dssp             -------CCTTEETTTTCE------------ECCC-EEETTEEEEECS---SCCEEECTTEES--TTSCE---------E
T ss_pred             ccCeeeeCCCcCcCCCccc------------ccCC-CCCcCCCCEeCC---CCeeECCCCCcC--CCCCC---------C
Confidence            3456899999999876651            2432 134666678853   347999999998  77864         3


Q ss_pred             CCCCCCCCCCC-CCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCC
Q psy5750         166 PCESDPRACNP-PHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF  244 (286)
Q Consensus       166 ~C~~~~~~C~~-~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy  244 (286)
                      .|..   .| . .++.|++   .++|.|++||+|.         .|+   +|...+ .|.++ +|+   ++|+|+|++||
T Consensus        67 ~C~~---~C-~~~~g~C~~---~~~C~C~~G~~G~---------~C~---~C~~~~-~C~~g-~C~---~~~~C~C~~G~  122 (169)
T 2vj2_A           67 ICRQ---GC-SPKHGSCKL---PGDCRCQYGWQGL---------YCD---KCIPHP-GCVHG-ICN---EPWQCLCETNW  122 (169)
T ss_dssp             CCCT---TC-CTTTEECSS---TTCCEECTTEESS---------SSC---EECCCT-TCSSE-ECS---STTCCEECTTE
T ss_pred             CCCC---CC-CCCCcccCC---CCeeECCCCCCCC---------Ccc---cCCCCC-CCCCC-CcC---CCCEEeCCCCC
Confidence            4543   35 3 4567865   5799999999998         453   355432 37654 887   68999999999


Q ss_pred             cCCCCCcC-CCCeeecccccccccceeeee-----cccccCCc
Q psy5750         245 SGDGFNCE-EGKYCLVVGITLCKMYLEVVN-----IQEICGEN  281 (286)
Q Consensus       245 ~gdg~~C~-~~~~c~~~~~~~c~~~~~~~~-----~~~~~~~~  281 (286)
                      +|+  .|+ +.++|..  ..+|...+++++     ++.+|.+.
T Consensus       123 ~G~--~C~~~~~~C~~--~~~C~~~g~C~~~~~~~~~C~C~~G  161 (169)
T 2vj2_A          123 GGQ--LCDKDLNYCGT--HQPCLNGGTCSNTGPDKYQCSCPEG  161 (169)
T ss_dssp             ETT--TTCEESCHHHH--TCCCCTTCEEEECSTTCEEEECCTT
T ss_pred             CCC--cccCCCCCCCC--CCCCCCCCEEcCCCCCCcEeECCCC
Confidence            987  897 5667753  346888889887     34566554

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.18  E-value=7.4e-12  Score=96.42  Aligned_cols=79  Identities=24%  Similarity=0.622  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcccc-CCCcCCCCCCCCCCC---eeeeCCC-Ceee
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTD-VDECMNYPPICNNNA---DCINRPG-TYQC  238 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d-~deC~~~~~~C~~~~---~C~n~~g-~y~C  238 (286)
                      +++|..  ++| .++++|++..++|+|.|++||+|.         .|++ +++|..-+  |.+++   +|+|+.+ +|+|
T Consensus        47 id~C~~--~pC-~n~g~C~~~~g~y~C~C~~G~~G~---------~C~~~~~~c~~c~--~~~~~C~~~C~~~~g~~y~C  112 (142)
T 2c4f_L           47 GDQCAS--SPC-QNGGSCKDQLQSYICFCLPAFEGR---------NCETHKDDQLICV--NENGGCEQYCSDHTGTKRSC  112 (142)
T ss_dssp             CCGGGG--CCC-CTTCEEEEETTEEEEECCTTEEST---------TSCEEGGGCCSTT--TGGGGCSSEEECCTTSCCEE
T ss_pred             cCcCcC--CCc-CCCCEEeCCCCCEEeeCCCCccCC---------ccccCcccccccc--CCCCCccCEeECCCCCCEEE
Confidence            889986  789 888999999999999999999987         7764 67753221  33333   8999999 9999


Q ss_pred             ecCCCCc--CCCCCcCCCCe
Q psy5750         239 QCKRGFS--GDGFNCEEGKY  256 (286)
Q Consensus       239 ~C~~Gy~--gdg~~C~~~~~  256 (286)
                      .|++||.  ++|++|+..++
T Consensus       113 ~C~~Gy~l~~dG~~C~~~~e  132 (142)
T 2c4f_L          113 RCHEGYSLLADGVSCTPTVE  132 (142)
T ss_dssp             ECCTTEEECTTSSCEEESSS
T ss_pred             ECCCCceECCCCCCCCCCCc
Confidence            9999999  56778865544

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.17  E-value=6.9e-12  Score=95.57  Aligned_cols=81  Identities=27%  Similarity=0.605  Sum_probs=31.1

Q ss_pred             CcCCCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccC-CCcCCCCCCCCCCCeeecCCCCeeEeC
Q psy5750          64 STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDI-NECNAGTDLCHKNAMCFNEIGSYSCQC  142 (286)
Q Consensus        64 ~~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~-~~C~~~~~~C~~~~~C~~~~g~~~C~C  142 (286)
                      .+.++++|..+||.++++|++..++|+|.|++||.|..|+         ..+ ++|.....+|.+  .|++..++|+|.|
T Consensus        38 ~c~d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~C~---------~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C  106 (134)
T 2vh0_B           38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE---------LFTRKLCSLDNGDCDQ--FCHEEQNSVVCSC  106 (134)
T ss_dssp             ----------------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEEC
T ss_pred             cCCCcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCccc---------cCCCCccccCCCCCCC--EeECCCCCEEEEC
Confidence            4678999999999999999999999999999999976555         335 778764456765  9999999999999


Q ss_pred             CCCcc--cCCCceec
Q psy5750         143 RPGFT--GNGHQCTE  155 (286)
Q Consensus       143 ~~G~~--g~~~~C~~  155 (286)
                      ++||+  +++..|.+
T Consensus       107 ~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B          107 ARGYTLADNGKACIP  121 (134)
T ss_dssp             CTTEEECTTSSCEEE
T ss_pred             CCCcEECCCCCccCc
Confidence            99999  44588987

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.12  E-value=8.2e-11  Score=102.71  Aligned_cols=80  Identities=30%  Similarity=0.735  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccc-cCCCcCCC-CCCCCCCCeeeeCCCCeeeecC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCT-DVDECMNY-PPICNNNADCINRPGTYQCQCK  241 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~-d~deC~~~-~~~C~~~~~C~n~~g~y~C~C~  241 (286)
                      +++|..  .+| .+++.|++..++|.|.|++||.|.         .|+ |+|||... ++.|.+  .|+|..++|.|.|+
T Consensus         5 ~~~C~~--~pC-~~~g~C~~~~~~~~C~C~~g~~g~---------~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~   70 (317)
T 3h5c_B            5 GSPCIS--QPC-LHNGSCQDSIWGYTCTCSPGYEGS---------NCELAKNECHPERTDGCQH--FCLPGQESYTCSCA   70 (317)
T ss_dssp             -CCTTS--CCC-TTTCCCCCCSSSCCCCCSSSCCSS---------SSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECC
T ss_pred             CCcCCC--CCC-CCCCEeECCCCCeEEECCCCCcCC---------ccccCcccCCCCCCCCCcC--ccccCCCeeEEecc
Confidence            788987  789 889999999999999999999988         786 99999873 256986  99999999999999


Q ss_pred             CCCcC--CCCCcCCCCee
Q psy5750         242 RGFSG--DGFNCEEGKYC  257 (286)
Q Consensus       242 ~Gy~g--dg~~C~~~~~c  257 (286)
                      +||.+  ++..|...++|
T Consensus        71 ~g~~~~~~~~~C~~~~~c   88 (317)
T 3h5c_B           71 QGYRLGEDHKQCVPHDQC   88 (317)
T ss_dssp             TTEECCTTSSCCEECSSC
T ss_pred             cccccccccccccccccc
Confidence            99998  45667555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.10  E-value=4.4e-10  Score=108.20  Aligned_cols=121  Identities=28%  Similarity=0.659  Sum_probs=81.9

Q ss_pred             CCccCCCcC-CCCCCCCCCCeeecCCC--CeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q psy5750         111 GCFDINECN-AGTDLCHKNAMCFNEIG--SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDY  187 (286)
Q Consensus       111 ~C~~~~~C~-~~~~~C~~~~~C~~~~g--~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~  187 (286)
                      .|..++.|. .....|.+ +.|++...  .+.+.|..|+.+....|         .+++|......|   .+.|+++.++
T Consensus       248 ~C~~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C---------~~~eC~~~~~~C---~~~C~~~~~~  314 (699)
T 1n7d_A          248 GCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKEC---------GTNECLDNNGGC---SHVCNDLKIG  314 (699)
T ss_dssp             STTCCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSC---------CCCCTTSSTTTS---CTTCCCCTTC
T ss_pred             CCCCCCcccCCCceecCC-CcEeCCcccccccceecCccccccccc---------ccccccccccCc---CCCcccCCCC
Confidence            344344452 22245644 46654422  23455666554432334         268888765667   3689999999


Q ss_pred             ceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCcCC
Q psy5750         188 RTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNCEE  253 (286)
Q Consensus       188 ~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C~~  253 (286)
                      |+|.|++||.+.      ++..|+++|||... ..|.  +.|+|++|+|+|.|++||.+  ++++|..
T Consensus       315 ~~C~C~~G~~~~------~~~~C~dideC~~~-~~C~--~~C~n~~g~y~C~C~~G~~~~~~~~~C~~  373 (699)
T 1n7d_A          315 YECLCPDGFQLV------AQRRCEDIDECQDP-DTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKA  373 (699)
T ss_dssp             CCCCCCSSSCCC------SSSCCCCCCCCSSS-SSCT--TTCCBCSSCBCCCCCSSCBCCSSCCCCBC
T ss_pred             cEEeCCCCeEcC------CCCcccCccccCCC-Cccc--cccccCCCCeeeeeecccccCCCCCcccc
Confidence            999999999962      12379999999743 5686  48999999999999999997  4667853

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=99.09  E-value=1.4e-10  Score=97.75  Aligned_cols=63  Identities=27%  Similarity=0.446  Sum_probs=60.2

Q ss_pred             CccceEEEEEEC-CCCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec
Q psy5750           1 GVFNYSAELIFS-TGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS   63 (286)
Q Consensus         1 g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~   63 (286)
                      |.|+|+++|+|. +++.|+|+|+|.|+|.+++|++++.+.|.+|.++.++.+++.||.|.|++.
T Consensus       132 G~F~r~s~v~F~~g~e~l~i~q~~~GlD~~g~L~~~~~i~G~vP~i~~~~~v~i~dy~E~Y~~~  195 (285)
T 1gl4_A          132 GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTELYHYS  195 (285)
T ss_dssp             TEEEEEEEEEETTSSSCEEEEEEEECBCTTSCEECEEEEEEEECCCCTTCEEECCCEEEEEEEE
T ss_pred             ceEEEEEEEEEcCCCeEEEEEEEEEccCcCCcEEEEEEEeeecCCCCCCCeeecCCcceEEEEc
Confidence            789999999999 559999999999999999999999999999999999999999999999864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.06  E-value=2.6e-10  Score=99.49  Aligned_cols=78  Identities=32%  Similarity=0.704  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCC-CCCCCCCCeeecCCCCeeEeCCCC
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAG-TDLCHKNAMCFNEIGSYSCQCRPG  145 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~-~~~C~~~~~C~~~~g~~~C~C~~G  145 (286)
                      ++|+|..+||.++++|++..++|.|.|++||.|..|+         .++++|... .++|.+  .|++..++|.|.|++|
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~---------~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g   72 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE---------LAKNECHPERTDGCQH--FCLPGQESYTCSCAQG   72 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSC---------CCSSSCCTTCTTSCSS--EEECCSSSCEEECCTT
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccc---------cCcccCCCCCCCCCcC--ccccCCCeeEEecccc
Confidence            6789999999999999999999999999999877665         589999863 378987  9999999999999999


Q ss_pred             ccc--CCCceec
Q psy5750         146 FTG--NGHQCTE  155 (286)
Q Consensus       146 ~~g--~~~~C~~  155 (286)
                      |.+  ++..|.+
T Consensus        73 ~~~~~~~~~C~~   84 (317)
T 3h5c_B           73 YRLGEDHKQCVP   84 (317)
T ss_dssp             EECCTTSSCCEE
T ss_pred             cccccccccccc
Confidence            996  3467877

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.05  E-value=3e-10  Score=102.60  Aligned_cols=130  Identities=24%  Similarity=0.562  Sum_probs=83.5

Q ss_pred             eEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCC--C-CCCCC
Q psy5750          90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQ--T-GPTSP  166 (286)
Q Consensus        90 ~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~--~-~~~~~  166 (286)
                      .|.|.+||.|..|+         .   .|    .+|.+++.|.+  +.+.|.|++||+|  ..|+....+.  . .-.++
T Consensus       186 ~c~C~~g~~G~~C~---------~---~C----~~C~~~G~C~~--~~g~C~C~~G~~G--~~Ce~~C~~g~~g~~C~~~  245 (423)
T 2gy5_A          186 VRRCEAQKWGPECN---------H---LC----TACMNNGVCHE--DTGECICPPGFMG--RTCEKACELHTFGRTCKER  245 (423)
T ss_dssp             ECSSCTTEESTTSC---------E---EC----CCCCTTCEECT--TTCCEECCTTEES--TTSCEECCTTEESTTSCEE
T ss_pred             CCcCCCCCCCCCCC---------C---CC----CCCCCCCEEEC--CCCcEeCCCCccC--CCcccccCCCCCCCCcCcc
Confidence            57889999877555         1   23    36888999976  4679999999999  7786411000  0 00123


Q ss_pred             CCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCcccc---CCCcCCCCCCCCCCCeeeeCCCCeeeecCCC
Q psy5750         167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTD---VDECMNYPPICNNNADCINRPGTYQCQCKRG  243 (286)
Q Consensus       167 C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d---~deC~~~~~~C~~~~~C~n~~g~y~C~C~~G  243 (286)
                      |.. ...| .+++.|.  .+.|.|.|++||.|..+..     .|..   -+.|... -.|.++++|.+..   .|.|++|
T Consensus       246 C~~-~~~C-~~~g~C~--~~~~~C~C~~G~~G~~C~~-----~C~~G~~G~~C~~~-C~C~ngg~C~~~~---~C~C~~G  312 (423)
T 2gy5_A          246 CSG-QEGC-KSYVFCL--PDPYGCSCATGWKGLQCNE-----ACHPGFYGPDCKLR-CSCNNGEMCDRFQ---GCLCSPG  312 (423)
T ss_dssp             CCS-TTTT-TTCCEEE--TTTTEEECCBTCBSGGGCB-----CCCTTBCSBTTCCB-CCCTTCCEEETTT---EEECCTT
T ss_pred             CCC-CCCC-CCCCEEC--CCCCeEEeCCCcccccccC-----ccCCCCcCCccccc-ccCCCCCEecCCC---ceECCCC
Confidence            432 2456 5556664  5688999999999984421     1110   1223221 1488899998764   3999999


Q ss_pred             CcCCCCCcCCC
Q psy5750         244 FSGDGFNCEEG  254 (286)
Q Consensus       244 y~gdg~~C~~~  254 (286)
                      |.|.  .|+..
T Consensus       313 ~~G~--~Ce~~  321 (423)
T 2gy5_A          313 WQGL--QCERE  321 (423)
T ss_dssp             CBST--TSCBC
T ss_pred             CcCC--CCccC
Confidence            9988  88654

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.97  E-value=2.5e-10  Score=83.29  Aligned_cols=72  Identities=31%  Similarity=0.760  Sum_probs=33.2

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc-CCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeC
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNC  192 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C  192 (286)
                      ++++|......|.  +.|++..++|.|.|++||++ ++..|++        +++|.. ..+| .  +.|+++.++|.|.|
T Consensus        28 d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~d--------ideC~~-~~~C-~--~~C~n~~gsy~C~C   93 (107)
T 2w2n_E           28 GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCED--------IDECQD-PDTC-S--QLCVNLEGGYKCQC   93 (107)
T ss_dssp             SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC-------------------------------------
T ss_pred             cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCcccc--------ccccCC-CCCc-C--CeeecCCCCEEEEC
Confidence            6788986445675  48999999999999999997 5678998        999974 3678 4  79999999999999


Q ss_pred             CCCCCCC
Q psy5750         193 DPGYQKD  199 (286)
Q Consensus       193 ~~G~~g~  199 (286)
                      ++||.+.
T Consensus        94 ~~Gy~~~  100 (107)
T 2w2n_E           94 EEGFQLD  100 (107)
T ss_dssp             -------
T ss_pred             CCCceEC
Confidence            9999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.94  E-value=5e-10  Score=100.90  Aligned_cols=77  Identities=32%  Similarity=0.796  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCC
Q psy5750         165 SPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF  244 (286)
Q Consensus       165 ~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy  244 (286)
                      ++|...+..|   .+.|+++.++|.|.|++||.+.      ++..|+|+|||.. +..|.+  .|+|++|+|.|.|++||
T Consensus         1 ~eC~~~~~~c---~~~C~~~~~~y~C~C~~G~~~~------~~~~C~dideC~~-~~~C~~--~C~n~~g~~~C~C~~g~   68 (400)
T 3p5b_L            1 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLV------AQRRCEDIDECQD-PDTCSQ--LCVNLEGGYKCQCEEGF   68 (400)
T ss_dssp             CCTTTTGGGC---SSEEEECSSSEEEECCTTEEEC------SSSCEEECCCCST-TSSCSS--CCBCCSSSCBCCCCTTC
T ss_pred             CcccCCCCCC---CCEeECCCCCeEEECCCCCCcC------CCCcccCchhhhc-cCCCCC--ccCCCccceeeeccccc
Confidence            4676643445   5799999999999999999852      1237999999984 457875  89999999999999999


Q ss_pred             cC--CCCCcCC
Q psy5750         245 SG--DGFNCEE  253 (286)
Q Consensus       245 ~g--dg~~C~~  253 (286)
                      .+  ++++|..
T Consensus        69 ~~~~~~~~C~~   79 (400)
T 3p5b_L           69 QLDPHTKACKA   79 (400)
T ss_dssp             CCCTTTSSCCC
T ss_pred             cccccccceee
Confidence            96  4567744

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.90  E-value=1.5e-09  Score=105.43  Aligned_cols=125  Identities=28%  Similarity=0.652  Sum_probs=81.8

Q ss_pred             CCCccCCCcC-CCCCCCCCCCeeecCCC--CeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q psy5750         110 FGCFDINECN-AGTDLCHKNAMCFNEIG--SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTD  186 (286)
Q Consensus       110 ~~C~~~~~C~-~~~~~C~~~~~C~~~~g--~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g  186 (286)
                      ..|..+++|. ....+|.+ +.|++...  ...+.|..|+-.....|.         +++|......|   .+.|+++.+
T Consensus       265 ~~C~~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~---------~~~C~~~~~~C---~~~C~~~~~  331 (791)
T 3m0c_C          265 VGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECG---------TNECLDNNGGC---SHVCNDLKI  331 (791)
T ss_dssp             --------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBS---------CCSTTTGGGGC---SSEEEECSB
T ss_pred             CcccccccccCCCccccCC-CcccccccccCCccccccccCccccccc---------cccccccccCc---cccccCCCC
Confidence            3454455553 22256764 57765532  234567776655334453         57777654556   358999999


Q ss_pred             CceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCcCCCCe
Q psy5750         187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNCEEGKY  256 (286)
Q Consensus       187 ~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C~~~~~  256 (286)
                      +|.|.|++||.+.      ++..|+|+|||.. +..|.  ..|+|++|+|+|.|++||.+  ++++|+....
T Consensus       332 ~y~C~C~~Gy~l~------~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~  394 (791)
T 3m0c_C          332 GYECLCPDGFQLV------AQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS  394 (791)
T ss_dssp             SEEEECCTTCEEE------TTTEEECCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSEECCSSCCCCEETTS
T ss_pred             CcccCCCCCCccC------CCCccccCcccCC-CCCCC--CeeecCCCCceeecCCCCEeCCCCceeeeccc
Confidence            9999999999752      1238999999983 45675  48999999999999999986  6677855443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.85  E-value=4.5e-10  Score=100.66  Aligned_cols=78  Identities=28%  Similarity=0.776  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG  243 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~G  243 (286)
                      +++|...+..|   ...|.+..++|+|.|++||++..     ++..|+|+|||.. +..|.+  .|+|++|+|.|.|++|
T Consensus         3 ~~~C~~~~~~c---~~~C~~~~g~~~C~C~~G~~l~~-----~~~~C~d~~eC~~-~~~C~~--~C~~~~g~~~C~C~~g   71 (386)
T 3v65_B            3 EENCNVNNGGC---AQKCQMIRGAVQCTCHTGYRLTE-----DGRTCQDVNECAE-EGYCSQ--GCTNSEGAFQCWCEAG   71 (386)
T ss_dssp             ----------------------------------------------------------CCTT--EEC-----CCEECCTT
T ss_pred             cCcccCCCCCC---CCCCcCCCCCcEeECCCCceECC-----CCCccCccceeCC-cCcccC--cCCCCCCCCeEEECCC
Confidence            78898765667   45898889999999999998542     2338999999973 356976  4999999999999999


Q ss_pred             Cc--CCCCCcC
Q psy5750         244 FS--GDGFNCE  252 (286)
Q Consensus       244 y~--gdg~~C~  252 (286)
                      |.  .++++|+
T Consensus        72 ~~l~~d~~~C~   82 (386)
T 3v65_B           72 YELRPDRRSCK   82 (386)
T ss_dssp             EEECTTSSCEE
T ss_pred             ceEcCCCCeEC
Confidence            98  4577885

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=98.73  E-value=2.8e-08  Score=89.73  Aligned_cols=118  Identities=27%  Similarity=0.644  Sum_probs=78.1

Q ss_pred             CCCCC--CCCCCCCeeeeCCCCCeEecCCCcccccccccCCC---CCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCC
Q psy5750          69 DPCKN--FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQD---DFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCR  143 (286)
Q Consensus        69 ~~C~~--~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~---~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~  143 (286)
                      +.|..  .||.++++|.+  +.+.|.|++||.|..|+.....   +..|.  ++|.. ...|.+++.|.  .+.|.|.|+
T Consensus       196 ~~C~~~C~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~--~~C~~-~~~C~~~g~C~--~~~~~C~C~  268 (423)
T 2gy5_A          196 PECNHLCTACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCK--ERCSG-QEGCKSYVFCL--PDPYGCSCA  268 (423)
T ss_dssp             TTSCEECCCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSC--EECCS-TTTTTTCCEEE--TTTTEEECC
T ss_pred             CCCCCCCCCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcC--ccCCC-CCCCCCCCEEC--CCCCeEEeC
Confidence            44554  48999999987  4579999999999988732211   12333  24542 36788888885  567899999


Q ss_pred             CCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCC
Q psy5750         144 PGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYL  201 (286)
Q Consensus       144 ~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~  201 (286)
                      +||.|  ..|+....+ .-.-+.|... -+| .+++.|.+..   .|.|++||.|..+
T Consensus       269 ~G~~G--~~C~~~C~~-G~~G~~C~~~-C~C-~ngg~C~~~~---~C~C~~G~~G~~C  318 (423)
T 2gy5_A          269 TGWKG--LQCNEACHP-GFYGPDCKLR-CSC-NNGEMCDRFQ---GCLCSPGWQGLQC  318 (423)
T ss_dssp             BTCBS--GGGCBCCCT-TBCSBTTCCB-CCC-TTCCEEETTT---EEECCTTCBSTTS
T ss_pred             CCccc--ccccCccCC-CCcCCccccc-ccC-CCCCEecCCC---ceECCCCCcCCCC
Confidence            99998  777641100 0001233321 267 7788898754   4999999999833

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.69  E-value=1e-08  Score=64.76  Aligned_cols=43  Identities=28%  Similarity=0.697  Sum_probs=35.5

Q ss_pred             cc-ccCCCcCCCCCCCCCCCee-----eeCCCCeeeecCCCCcCCCCCcCCCC
Q psy5750         209 VC-TDVDECMNYPPICNNNADC-----INRPGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       209 ~C-~d~deC~~~~~~C~~~~~C-----~n~~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      .| .++|||...|  |.++|+|     ++..++|.|.|++||.|.  .||..+
T Consensus         3 ~c~~~~~eC~s~p--C~NgGtC~~~~~~d~~~~y~C~C~~g~~G~--~CE~~v   51 (55)
T 3u7u_G            3 SHLVKCAEKEKTF--CVNGGECFMVKDLSNPSRYLCKCPNEFTGD--RCQNYV   51 (55)
T ss_dssp             CCEEECCSTTTTT--SCTTCEEEEECCC--CCCEEEEECTTEEST--TSCEEC
T ss_pred             CCcccCCCCcCCC--CCCCCCcCCCCccCCCCCEeEeCCCCCcCC--CcCccC
Confidence            45 6899999876  9999999     456789999999999999  997654

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.69  E-value=1.7e-08  Score=59.32  Aligned_cols=37  Identities=43%  Similarity=1.031  Sum_probs=33.0

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |+|+|...|  |.++++|++..++|.|.|++||+|.  .|+
T Consensus         2 d~d~C~~~p--C~ngg~C~~~~~~~~C~C~~G~~G~--~Ce   38 (39)
T 1edm_B            2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE   38 (39)
T ss_dssp             CCCTTTTCC--CCTTCEEEEETTEEEEECCTTCCST--TSC
T ss_pred             ccccCCCCC--CCCCCEeEcCCCceEeECCCCCcCC--ccC
Confidence            688998754  9999999999999999999999987  774

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.68  E-value=1.7e-08  Score=95.85  Aligned_cols=120  Identities=27%  Similarity=0.786  Sum_probs=86.6

Q ss_pred             CCCC----CCCCCCCeeeeCCCCCeEecC------CCcccccccccCCCCCCCccCCCcCCC-CCCCCC--CCeeecCCC
Q psy5750          70 PCKN----FFCVANSSCIVEDDKPTCICN------RGFQQLYSEDRLQDDFGCFDINECNAG-TDLCHK--NAMCFNEIG  136 (286)
Q Consensus        70 ~C~~----~~C~~~~~C~~~~g~~~C~C~------~g~~~~~c~~~~~~~~~C~~~~~C~~~-~~~C~~--~~~C~~~~g  136 (286)
                      .|..    .+|.++++|+..    .|.|.      +||.|..|+         .+...|... ..+|.+  ++.|...  
T Consensus       474 ~C~~~~~~~~Cs~~G~C~~G----~C~C~~~~~~~~G~~G~~Ce---------~~~~~C~~~~~~~C~~~~~G~C~~g--  538 (687)
T 3k6s_B          474 SCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCE---------CDTINCERYNGQVCGGPGRGLCFCG--  538 (687)
T ss_dssp             TTSSSTTSCGGGSSEEEETT----EEEECCCCSTTCCEESTTSC---------EESSCSCEETTEETSHHHHEEEETT--
T ss_pred             CCCCCCCCCcCCCCCEEeCC----EEEcCCCCCCCCCccccccc---------cccccccCCCCcCcCCCCCCeEECC--
Confidence            4654    348899999843    89999      999998887         455666531 146887  8899853  


Q ss_pred             CeeEeCCCCcccCCCceecccCCCCCCCCCCCCC-CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCC
Q psy5750         137 SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESD-PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDE  215 (286)
Q Consensus       137 ~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~-~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~de  215 (286)
                        .|.|.+||+|  ..|+-     ....+.|... ..+| .+++.|+.    ..|.|.+||.|.         .|+.-..
T Consensus       539 --~C~C~~G~~G--~~Cec-----~~~~~~C~~~~g~~C-s~~G~C~~----g~C~C~~Gy~G~---------~Ce~c~~  595 (687)
T 3k6s_B          539 --KCRCHPGFEG--SACQC-----ERTTEGCLNPRRVEC-SGRGRCRC----NVCECHSGYQLP---------LCQECPG  595 (687)
T ss_dssp             --EEEECTTCCS--TTSCS-----CCSSCTTBCTTCSBT-SSSCCBCS----SCBCCSTTCCTT---------TTCCCTT
T ss_pred             --EEEcCCCCcC--CCCcc-----CCCCCCCCCCCCCCC-CCCCcCCC----CEEECCCCCcCC---------CCCCCCC
Confidence              8999999999  77762     0014667642 2368 77889986    489999999999         5644345


Q ss_pred             cCCCCCCCCCCCeee
Q psy5750         216 CMNYPPICNNNADCI  230 (286)
Q Consensus       216 C~~~~~~C~~~~~C~  230 (286)
                      |.   ..|.+++.|+
T Consensus       596 C~---~~C~~~g~Cv  607 (687)
T 3k6s_B          596 CP---SPCGKYISCA  607 (687)
T ss_dssp             SC---CCCTTTHHHH
T ss_pred             CC---cccCCCCCCC
Confidence            73   3598888887

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.67  E-value=5e-08  Score=94.89  Aligned_cols=84  Identities=29%  Similarity=0.677  Sum_probs=64.5

Q ss_pred             CCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc-CCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCC
Q psy5750         115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCD  193 (286)
Q Consensus       115 ~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~  193 (286)
                      +++|......|.  ..|+++.++|.|.|++||.+ ++..|.+        +++|.. +.+|   ...|+++.++|+|.|+
T Consensus       312 ~~~C~~~~~~C~--~~C~~~~~~y~C~C~~Gy~l~~g~~C~d--------ideC~~-~~~C---~~~C~n~~gsy~C~C~  377 (791)
T 3m0c_C          312 TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCED--------IDECQD-PDTC---SQLCVNLEGGYKCQCE  377 (791)
T ss_dssp             CCSTTTGGGGCS--SEEEECSBSEEEECCTTCEEETTTEEEC--------CCCCSS-SSSC---TTTCCBCSSCBCCCCC
T ss_pred             cccccccccCcc--ccccCCCCCcccCCCCCCccCCCCcccc--------CcccCC-CCCC---CCeeecCCCCceeecC
Confidence            455654333453  38999999999999999974 5588998        999984 3677   4699999999999999


Q ss_pred             CCCCCCCCCCcccCCccccCCCcC
Q psy5750         194 PGYQKDYLDDRRVAFVCTDVDECM  217 (286)
Q Consensus       194 ~G~~g~~~~~~~~~~~C~d~deC~  217 (286)
                      +||.+...     +..|.+++++.
T Consensus       378 ~Gy~l~~~-----~~~C~~~~~~p  396 (791)
T 3m0c_C          378 EGFQLDPH-----TKACKAVGSIA  396 (791)
T ss_dssp             SSEECCSS-----CCCCEETTSCC
T ss_pred             CCCEeCCC-----Cceeeeccccc
Confidence            99988632     34687777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.64  E-value=5.1e-08  Score=87.69  Aligned_cols=71  Identities=30%  Similarity=0.700  Sum_probs=58.3

Q ss_pred             CCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc-CCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCC
Q psy5750         116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDP  194 (286)
Q Consensus       116 ~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~  194 (286)
                      |||..  .+|...+.|+++.++|.|.|++||.+ ++..|++        +++|.. +.+| .  ..|+++.++|.|.|.+
T Consensus         1 ~eC~~--~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~d--------ideC~~-~~~C-~--~~C~n~~g~~~C~C~~   66 (400)
T 3p5b_L            1 NECLD--NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED--------IDECQD-PDTC-S--QLCVNLEGGYKCQCEE   66 (400)
T ss_dssp             CCTTT--TGGGCSSEEEECSSSEEEECCTTEEECSSSCEEE--------CCCCST-TSSC-S--SCCBCCSSSCBCCCCT
T ss_pred             CcccC--CCCCCCCEeECCCCCeEEECCCCCCcCCCCcccC--------chhhhc-cCCC-C--CccCCCccceeeeccc
Confidence            46766  44444569999999999999999984 4588998        999984 3688 4  4999999999999999


Q ss_pred             CCCCCC
Q psy5750         195 GYQKDY  200 (286)
Q Consensus       195 G~~g~~  200 (286)
                      ||.+..
T Consensus        67 g~~~~~   72 (400)
T 3p5b_L           67 GFQLDP   72 (400)
T ss_dssp             TCCCCT
T ss_pred             cccccc
Confidence            999873

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.61  E-value=1.1e-08  Score=66.13  Aligned_cols=46  Identities=20%  Similarity=0.644  Sum_probs=39.6

Q ss_pred             ccccCCCcCCCCCCCCCC--CeeeeCCCCeeeecCCCCc-CCCCCcCCCCeee
Q psy5750         209 VCTDVDECMNYPPICNNN--ADCINRPGTYQCQCKRGFS-GDGFNCEEGKYCL  258 (286)
Q Consensus       209 ~C~d~deC~~~~~~C~~~--~~C~n~~g~y~C~C~~Gy~-gdg~~C~~~~~c~  258 (286)
                      .+.++|+|...|  |.++  ++|++..++|.|.|++||. |.  .|+....|.
T Consensus         7 ~~~~~d~C~snP--C~nga~gtC~~~~g~y~C~C~~Gy~~G~--~C~~~~~C~   55 (61)
T 2k2s_B            7 LSETPAACSSNP--CGPEAAGTCKETNSGYICRCNQGYRISL--DGTGNVTCI   55 (61)
T ss_dssp             CTTSCCHHHHCS--SCSSSCCEEEECSSEEEEECCTTEEEEE--CSSSCEEEE
T ss_pred             hcCCCCcCcCCC--CcCCCccccccCCCceEeECCCCCccCC--CCCCCCEec
Confidence            567899998765  9998  8999999999999999999 87  887766663

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=1.6e-08  Score=90.60  Aligned_cols=80  Identities=25%  Similarity=0.670  Sum_probs=20.6

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF  146 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~  146 (286)
                      ++|+|..+++.-...|.+..++|+|.|++||.+.  .    ++..|.+++||.. ..+|.+  .|+++.++|.|.|.+||
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~--~----~~~~C~d~~eC~~-~~~C~~--~C~~~~g~~~C~C~~g~   72 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLT--E----DGRTCQDVNECAE-EGYCSQ--GCTNSEGAFQCWCEAGY   72 (386)
T ss_dssp             ---------------------------------------------------------CCTT--EEC-----CCEECCTTE
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceEC--C----CCCccCccceeCC-cCcccC--cCCCCCCCCeEEECCCc
Confidence            5788987654334499988999999999999854  2    4778999999972 378976  59999999999999999


Q ss_pred             c--cCCCceec
Q psy5750         147 T--GNGHQCTE  155 (286)
Q Consensus       147 ~--g~~~~C~~  155 (286)
                      .  .++..|..
T Consensus        73 ~l~~d~~~C~~   83 (386)
T 3v65_B           73 ELRPDRRSCKA   83 (386)
T ss_dssp             EECTTSSCEEE
T ss_pred             eEcCCCCeECC
Confidence            8  34578875

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.56  E-value=2.1e-07  Score=89.52  Aligned_cols=73  Identities=29%  Similarity=0.702  Sum_probs=60.5

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc-CCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeC
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNC  192 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g-~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C  192 (286)
                      ++++|......|.  ..|+++.++|.|.|++||.+ ++..|.+        +++|... .+|   .+.|+++.++|+|.|
T Consensus       293 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~~~~~~~C~d--------ideC~~~-~~C---~~~C~n~~g~y~C~C  358 (699)
T 1n7d_A          293 GTNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCED--------IDECQDP-DTC---SQLCVNLEGGYKCQC  358 (699)
T ss_dssp             CCCCTTSSTTTSC--TTCCCCTTCCCCCCCSSSCCCSSSCCCC--------CCCCSSS-SSC---TTTCCBCSSCBCCCC
T ss_pred             ccccccccccCcC--CCcccCCCCcEEeCCCCeEcCCCCcccC--------ccccCCC-Ccc---ccccccCCCCeeeee
Confidence            5788876555675  48999999999999999984 4578988        9999843 678   369999999999999


Q ss_pred             CCCCCCCC
Q psy5750         193 DPGYQKDY  200 (286)
Q Consensus       193 ~~G~~g~~  200 (286)
                      ++||.+..
T Consensus       359 ~~G~~~~~  366 (699)
T 1n7d_A          359 EEGFQLDP  366 (699)
T ss_dssp             CSSCBCCS
T ss_pred             ecccccCC
Confidence            99999863

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.49  E-value=1e-07  Score=55.84  Aligned_cols=37  Identities=27%  Similarity=0.592  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ++++|..+||.++++|++..++|+|.|++||.|..|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            6789999999999999999999999999999987664

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.45  E-value=9.6e-08  Score=63.87  Aligned_cols=37  Identities=35%  Similarity=0.800  Sum_probs=30.7

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeee-cCCCCcCC
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQ-CKRGFSGD  247 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~-C~~Gy~gd  247 (286)
                      +|||||...++.|.++++|+|++|+|+|. +..||.++
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence            37999998778899889999999999998 34577654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.44  E-value=2.2e-07  Score=58.41  Aligned_cols=42  Identities=29%  Similarity=0.736  Sum_probs=34.7

Q ss_pred             cCCCcCCC-CCCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCCCC
Q psy5750         212 DVDECMNY-PPICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       212 d~deC~~~-~~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      ++|+|... ...|.++++|+  +..++|.|.|++||+|.  .|+..+
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~--~Ce~~~   46 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD--RCQTRD   46 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS--SSCCCS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC--cCCccC
Confidence            67889864 12499999999  88999999999999987  896643

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=98.43  E-value=2.3e-08  Score=84.27  Aligned_cols=46  Identities=22%  Similarity=0.593  Sum_probs=38.2

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCCCe
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKY  256 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~~~  256 (286)
                      +|+|||....+.|+.++.|+|++|+|.|.|++||.|+|+.|.+.+.
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d~d~   48 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGS   48 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEETTC
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCCCCC
Confidence            4899998777889999999999999999999999999999966554

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.39  E-value=1.7e-07  Score=87.24  Aligned_cols=63  Identities=21%  Similarity=0.398  Sum_probs=13.6

Q ss_pred             CCceeeCCCCCCCCCCCCcccCC--ccccCCCcCCCCCCCCCCCeeeeC--CCCeeeecCCCCcCCCCCcC
Q psy5750         186 DYRTCNCDPGYQKDYLDDRRVAF--VCTDVDECMNYPPICNNNADCINR--PGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       186 g~~~C~C~~G~~g~~~~~~~~~~--~C~d~deC~~~~~~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      ..+.|.|++||.|..+.+-..+.  ...++++|..-  .|.+++.|.+.  ..+++|.|++||.|+  .|+
T Consensus       458 ~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C--~C~~~gs~~~~C~~~tG~C~C~~G~~G~--~Ce  524 (525)
T 4aqs_A          458 ETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC--DCDLGGALNNSCSEDSGQCSCLPHMIGR--QCN  524 (525)
T ss_dssp             TTCCBCBCTTCCSTTTCC-----------------------------------------------------
T ss_pred             CCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCC--CCCCCCccCCccCCCCCeeECCCCCcCC--CCC
Confidence            34589999999998653211000  01345677653  37777666543  345689999999988  774

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.35  E-value=2.6e-07  Score=58.25  Aligned_cols=38  Identities=21%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCCeee-----eCCCCCeEecCCCccccccc
Q psy5750          66 VNDDPCKNFFCVANSSCI-----VEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        66 ~~~~~C~~~~C~~~~~C~-----~~~g~~~C~C~~g~~~~~c~  103 (286)
                      .++++|.++||.++++|.     +..++|.|.|++||.|..|+
T Consensus         6 ~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE   48 (55)
T 3u7u_G            6 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ   48 (55)
T ss_dssp             EECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSC
T ss_pred             ccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcC
Confidence            478999999999999994     55789999999999999887

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.32  E-value=3.9e-06  Score=68.62  Aligned_cols=103  Identities=20%  Similarity=0.467  Sum_probs=69.3

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCc--cCCCcCC--CCCCCCCCCeeecCCCCeeEeCCCC----
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCF--DINECNA--GTDLCHKNAMCFNEIGSYSCQCRPG----  145 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~--~~~~C~~--~~~~C~~~~~C~~~~g~~~C~C~~G----  145 (286)
                      ..|.++++|+.    ..|.|.+||.|..|+-..  .....  ....|..  ...+|.+++.|+..    .|.|.+|    
T Consensus        96 ~~Csg~G~C~~----g~C~C~~G~~G~~Cec~~--~~~~~~~~~~~C~~~~~~~~Csg~G~C~~g----~C~C~~gw~~~  165 (217)
T 2p28_B           96 SLCHGKGFLEC----GICRCDTGYIGKNCECQT--QGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPG  165 (217)
T ss_dssp             CTTTTSEEEET----TEEEECTTEESTTSCEEC--CCCC-GGGGGGGBSSTTSCBGGGTEEEETT----EEEECCCCSTT
T ss_pred             CccCCCceEEC----CEEECCCCccCCcccccC--cccccccCCCcCCCCCCCCCCCCCCEEeCC----ceECCCCCCCc
Confidence            57989999985    389999999999887211  10000  0123442  13678888999853    7999999    


Q ss_pred             --cccCCCceecccCCCCCCCCCCCCC-CCCCCCCC--CccccCCCCceeeCCCCCCCCC
Q psy5750         146 --FTGNGHQCTEITVPQTGPTSPCESD-PRACNPPH--STCTNLTDYRTCNCDPGYQKDY  200 (286)
Q Consensus       146 --~~g~~~~C~~~~~~~~~~~~~C~~~-~~~C~~~~--~~C~~~~g~~~C~C~~G~~g~~  200 (286)
                        |+|  ..|+-       +.+.|... ..+| ..+  ++|..    ..|.|.+||+|..
T Consensus       166 ~~~~G--~~Ce~-------~~~~C~~~~g~~C-~~~~~G~C~~----g~C~C~~G~~G~~  211 (217)
T 2p28_B          166 KLIYG--QYCEC-------DTINCERYNGQVC-GGPGRGLCFC----GKCRCHPGFEGSA  211 (217)
T ss_dssp             CCEES--TTSCE-------ESSCSCEETTEET-TCTTTEEEET----TEEEECTTEESTT
T ss_pred             ccEEC--CCccc-------CCccCCCCCCCCC-CCCCCcEEeC----CeeECCCCCccCC
Confidence              567  77763       14556541 1257 656  88875    2999999999983

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.31  E-value=1.1e-07  Score=61.25  Aligned_cols=39  Identities=21%  Similarity=0.534  Sum_probs=35.3

Q ss_pred             cCCCCCCCCCCCCCC--CeeeeCCCCCeEecCCCcc-ccccc
Q psy5750          65 TVNDDPCKNFFCVAN--SSCIVEDDKPTCICNRGFQ-QLYSE  103 (286)
Q Consensus        65 ~~~~~~C~~~~C~~~--~~C~~~~g~~~C~C~~g~~-~~~c~  103 (286)
                      +.++|+|.++||.++  ++|++..++|+|.|++||. |..|+
T Consensus         8 ~~~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~   49 (61)
T 2k2s_B            8 SETPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGT   49 (61)
T ss_dssp             TTSCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSS
T ss_pred             cCCCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCC
Confidence            567899999999998  8999999999999999999 88775

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.29  E-value=1.9e-07  Score=59.17  Aligned_cols=42  Identities=21%  Similarity=0.507  Sum_probs=34.8

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcCCCCee
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFS--GDGFNCEEGKYC  257 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~~~~~c  257 (286)
                      |||...++.|.+  .|+|++|+|+|.|++||.  .|+++|+.+++|
T Consensus         2 dEC~~~~~~C~~--~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPTGPY   45 (55)
T ss_dssp             CCTTTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred             ccccCCCCCcCc--EeEcCCCCeEEeCCCCCEECCCCCeeccCccc
Confidence            678765566864  899999999999999998  688889777766

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=98.21  E-value=9.8e-07  Score=55.33  Aligned_cols=39  Identities=38%  Similarity=0.908  Sum_probs=31.3

Q ss_pred             ccCCCcCCC--------CCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         211 TDVDECMNY--------PPICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       211 ~d~deC~~~--------~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      +|||||...        .+.|.  +.|+|++|+|.|.|++||.+  ++++|
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~~d~~~C   50 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQEDRHSC   50 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEECTTSSCE
T ss_pred             CccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeECCCCCcc
Confidence            478999764        25686  49999999999999999995  55666

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.19  E-value=9.7e-07  Score=72.24  Aligned_cols=105  Identities=26%  Similarity=0.689  Sum_probs=70.2

Q ss_pred             CCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCC--CCCCCCCC--CCCCCCCCCccccCCCCceeeCCCC---
Q psy5750         123 DLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTG--PTSPCESD--PRACNPPHSTCTNLTDYRTCNCDPG---  195 (286)
Q Consensus       123 ~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~--~~~~C~~~--~~~C~~~~~~C~~~~g~~~C~C~~G---  195 (286)
                      ..|..++.|+.    ..|.|.+||+|  ..|+-.......  ....|...  ..+| .+++.|+.    ..|.|.+|   
T Consensus        96 ~~Csg~G~C~~----g~C~C~~G~~G--~~Cec~~~~~~~~~~~~~C~~~~~~~~C-sg~G~C~~----g~C~C~~gw~~  164 (217)
T 2p28_B           96 SLCHGKGFLEC----GICRCDTGYIG--KNCECQTQGRSSQELEGSCRKDNNSIIC-SGLGDCVC----GQCLCHTSDVP  164 (217)
T ss_dssp             CTTTTSEEEET----TEEEECTTEES--TTSCEECCCCC-GGGGGGGBSSTTSCBG-GGTEEEET----TEEEECCCCST
T ss_pred             CccCCCceEEC----CEEECCCCccC--CcccccCcccccccCCCcCCCCCCCCCC-CCCCEEeC----CceECCCCCCC
Confidence            56888899985    28999999999  666521000000  00134421  2567 77788885    38999999   


Q ss_pred             ---CCCCCCCCcccCCccc-cCCCcCCC-CCCCCCC--CeeeeCCCCeeeecCCCCcCCCCCcCC
Q psy5750         196 ---YQKDYLDDRRVAFVCT-DVDECMNY-PPICNNN--ADCINRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       196 ---~~g~~~~~~~~~~~C~-d~deC~~~-~~~C~~~--~~C~n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                         |.|.         .|+ ++++|... ...|..+  |+|.+    ..|.|.+||.|+  .|+.
T Consensus       165 ~~~~~G~---------~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~G~--~C~~  214 (217)
T 2p28_B          165 GKLIYGQ---------YCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGS--ACQH  214 (217)
T ss_dssp             TCCEEST---------TSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEEST--TSCE
T ss_pred             cccEECC---------CcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCccC--CcCC
Confidence               5776         563 56778643 1248877  99985    389999999998  7743

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.13  E-value=1.4e-06  Score=52.84  Aligned_cols=40  Identities=25%  Similarity=0.663  Sum_probs=30.7

Q ss_pred             cCCCcCCC-CCCCCCCCeeeeCC--CCeeeecCCCCcCCCCCcCCC
Q psy5750         212 DVDECMNY-PPICNNNADCINRP--GTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       212 d~deC~~~-~~~C~~~~~C~n~~--g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ++++|... ...|.+ ++|++..  ++|.|.|++||+|.  +||..
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~--~Ce~~   44 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGV--RCEHF   44 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSST--TSCCC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccC--CCCcc
Confidence            56788761 124998 7998754  68999999999998  88654

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.13  E-value=7.3e-07  Score=59.11  Aligned_cols=45  Identities=29%  Similarity=0.658  Sum_probs=38.1

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCC-CeeeecCCCCc--CCCCCcCCCCee
Q psy5750         211 TDVDECMNYPPICNNNADCINRPG-TYQCQCKRGFS--GDGFNCEEGKYC  257 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g-~y~C~C~~Gy~--gdg~~C~~~~~c  257 (286)
                      .|+|||...++.|.+  .|+|++| +|.|.|++||.  .|+++|...++|
T Consensus         3 ~d~~eC~~~nggC~h--~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec   50 (69)
T 1kli_L            3 DDQLICVNENGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   50 (69)
T ss_dssp             SCCCCTTSGGGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             cccccccCCCCCcCC--EeEcCCCCCEEEeCCCCCeECCCCCcccCcccc
Confidence            588999877677865  8999999 89999999997  588899777766

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.12  E-value=1.8e-06  Score=52.18  Aligned_cols=30  Identities=33%  Similarity=0.865  Sum_probs=26.5

Q ss_pred             CCCCCCeee--eCCCCeeeecCCCCcCCCCCcCC
Q psy5750         222 ICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       222 ~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .|.++++|+  +..++|.|.|++||+|.  .|+.
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~--~Ce~   41 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGD--RCQT   41 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETT--TTCE
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCC--cCCc
Confidence            499999998  67899999999999987  8864

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.05  E-value=4.2e-06  Score=52.40  Aligned_cols=37  Identities=22%  Similarity=0.520  Sum_probs=32.7

Q ss_pred             CCCCCCCC---CCCCCCeee--eCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNF---FCVANSSCI--VEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~---~C~~~~~C~--~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ++++|.+.   ||.++++|+  +..++|.|.|++||+|..|+
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   43 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCC
Confidence            46788886   999999999  77899999999999988776

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.00  E-value=4.8e-06  Score=50.23  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             CCCCC---CCCCCCeee--eCCCCCeEecCCCccccccc
Q psy5750          70 PCKNF---FCVANSSCI--VEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        70 ~C~~~---~C~~~~~C~--~~~g~~~C~C~~g~~~~~c~  103 (286)
                      +|.+.   ||.++++|+  +..++|+|.|++||+|..|+
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTC
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCC
Confidence            56666   999999998  56789999999999988776

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.98  E-value=2.4e-06  Score=55.64  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCCCCeeee-----CCCCCeEecCCCcccccccccCCCCCCCccCCCcCC
Q psy5750          68 DDPCKNFFCVANSSCIV-----EDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNA  120 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~-----~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~  120 (286)
                      .++|.++||.++++|++     ..++|.|.|++||.|..|+         .++++|..
T Consensus         6 c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce---------~~i~~~~~   54 (63)
T 1hae_A            6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT---------ENVPMKVQ   54 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC---------EECCSSCT
T ss_pred             cCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccC---------cCcCcccc
Confidence            45677799999999997     5688999999999988777         56666654

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.90  E-value=2.8e-06  Score=53.67  Aligned_cols=46  Identities=20%  Similarity=0.424  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCC
Q psy5750         165 SPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMN  218 (286)
Q Consensus       165 ~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~  218 (286)
                      ++|......| .  ..|+|+.|+|+|.|++||.+..     ++..|.++|||..
T Consensus         2 dEC~~~~~~C-~--~~C~nt~Gsy~C~C~~Gy~L~~-----d~~~C~didec~c   47 (55)
T 2jkh_L            2 KLCSLDNGDC-D--QFCHEEQNSVVCSCARGYTLAD-----NGKACIPTGPYPC   47 (55)
T ss_dssp             CCTTTGGGGC-S--SEEEEETTEEEEECCTTEEECT-----TSSCEEESSSSCT
T ss_pred             ccccCCCCCc-C--cEeEcCCCCeEEeCCCCCEECC-----CCCeeccCccccC
Confidence            5676555678 3  5899999999999999998652     2448999999964

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.89  E-value=3.1e-06  Score=52.53  Aligned_cols=37  Identities=19%  Similarity=0.492  Sum_probs=29.8

Q ss_pred             CCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcCCCCee
Q psy5750         219 YPPICNNNADCINRPGTYQCQCKRGFS--GDGFNCEEGKYC  257 (286)
Q Consensus       219 ~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~~~~~c  257 (286)
                      .++.|.+  .|+|++|+|+|.|++||+  .|+++|++++++
T Consensus         4 ~ng~C~~--~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~   42 (51)
T 1kig_L            4 DNGGCDQ--FCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             TTTSSSS--CCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCcCC--EeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence            3445754  799999999999999998  688889776655

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.89  E-value=3.8e-06  Score=54.69  Aligned_cols=37  Identities=35%  Similarity=0.871  Sum_probs=31.2

Q ss_pred             CCCcCCCCCCCCCCCeeee-----CCCCeeeecCCCCcCCCCCcCC
Q psy5750         213 VDECMNYPPICNNNADCIN-----RPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n-----~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .|+|...|  |.++++|++     ..++|.|.|++||+|.  .|+.
T Consensus         6 c~~C~~~p--C~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~--~Ce~   47 (63)
T 1hae_A            6 CAEKEKTF--CVNGGECFMVKDLSNPSRYLCKCQPGFTGA--RCTE   47 (63)
T ss_dssp             CCHHHHTT--SCTTCEEEEEESSSSSCCEEEECCTTEEST--TSCE
T ss_pred             cCCCCCCc--CCCCcEEecCCccCCCCCEEEECCCCCcCC--ccCc
Confidence            46777655  999999997     6789999999999988  8964

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.83  E-value=1.7e-06  Score=79.07  Aligned_cols=79  Identities=32%  Similarity=0.819  Sum_probs=32.9

Q ss_pred             EeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCC
Q psy5750         140 CQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNY  219 (286)
Q Consensus       140 C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~  219 (286)
                      +.|..+|.+  ..|.         ++.|..   +| .+ +.|++.   +.|.|.+||+|.         .| ++++|.. 
T Consensus       379 ~~C~~~~~g--~~c~---------~~~C~~---~C-~n-G~C~~~---~~C~C~~G~~G~---------~C-~~~~C~~-  428 (463)
T 2wg3_C          379 EECRATVQP--AQTL---------TSECSR---LC-RN-GYCTPT---GKCCCSPGWEGD---------FC-RTAKCEP-  428 (463)
T ss_dssp             GGGCCCCCC--CCCC---------CCHHHH---HC-CS-EEECTT---SCEEECTTEEST---------TS-CEECC---
T ss_pred             ccCCCCCcC--CCCc---------cccccC---CC-CC-CccCCC---CeECCCCCcCCC---------cC-CcCcCCC-
Confidence            456667766  4443         355653   47 64 788753   489999999998         66 3678875 


Q ss_pred             CCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCCC
Q psy5750         220 PPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       220 ~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                        .|.++++|++.   +.|.|++||.|.  .|+..+
T Consensus       429 --~C~~~g~C~~~---~~C~C~~G~~G~--~C~~~~  457 (463)
T 2wg3_C          429 --ACRHGGVCVRP---NKCLCKKGYLGP--QCEQVD  457 (463)
T ss_dssp             ------------------------------------
T ss_pred             --CCCCCCEECCC---CEEECCCCcccC--CCCCCc
Confidence              49999999864   799999999988  886543

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.82  E-value=2.8e-05  Score=54.73  Aligned_cols=71  Identities=20%  Similarity=0.442  Sum_probs=58.2

Q ss_pred             CCCCCCCCCCCCCCCcccc-CCCCceeeCCCCCCCCCCCCcccCCccccCCC-cCCCCCCCCCCCeeeeCC-CCeeeecC
Q psy5750         165 SPCESDPRACNPPHSTCTN-LTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDE-CMNYPPICNNNADCINRP-GTYQCQCK  241 (286)
Q Consensus       165 ~~C~~~~~~C~~~~~~C~~-~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~de-C~~~~~~C~~~~~C~n~~-g~y~C~C~  241 (286)
                      ..|..  ..| +.++.|.. .+|...|+|..||.+++.       .|..+++ |......|+.+|.|..+. ..-.|.|.
T Consensus        11 h~C~~--t~C-p~NA~C~r~~~G~e~CrCl~gY~~dg~-------~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~   80 (105)
T 1n1i_A           11 HKCID--TNV-PENAACYRYLDGTEEWRCLLGFKEVGG-------KCVPASITCEENNGGCAPEAECTMDDKKEVECKCT   80 (105)
T ss_dssp             TSCCS--SCC-CTTEEEEECTTSCEEEEECTTEEECSS-------SEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECC
T ss_pred             cEecC--CCC-CCCCCeEECCCCCEeEEEECCeeccCC-------EEEECCcchhhcCCCcCCCcEeEECCCCEEEeECC
Confidence            34543  457 77889987 778999999999999865       8976688 887777899999999874 78999999


Q ss_pred             CCCc
Q psy5750         242 RGFS  245 (286)
Q Consensus       242 ~Gy~  245 (286)
                      ++|.
T Consensus        81 ~~~~   84 (105)
T 1n1i_A           81 KEGS   84 (105)
T ss_dssp             STTC
T ss_pred             CCCC
Confidence            9975

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.80  E-value=1.9e-05  Score=55.27  Aligned_cols=66  Identities=24%  Similarity=0.632  Sum_probs=55.2

Q ss_pred             CCCCCCCCcccc-CCCCceeeCCCCCCCCCCCCcccCCccccC--CCcCCCCCCCCCCCeeeeCC-----CCeeeecCCC
Q psy5750         172 RACNPPHSTCTN-LTDYRTCNCDPGYQKDYLDDRRVAFVCTDV--DECMNYPPICNNNADCINRP-----GTYQCQCKRG  243 (286)
Q Consensus       172 ~~C~~~~~~C~~-~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~--deC~~~~~~C~~~~~C~n~~-----g~y~C~C~~G  243 (286)
                      ..| +.++.|.+ ..+.+.|+|.+||.+++.       .|..+  +.|...+..|+++|.|....     +...|.|.+|
T Consensus        10 ~~C-~~NA~C~r~~~g~e~C~C~~gy~gdg~-------~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g   81 (99)
T 1ob1_C           10 KQC-PQNSGCFRHLDEREECKCLLNYKQEGD-------KCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKP   81 (99)
T ss_dssp             CCC-CTTEEEECCTTSCCEEEECTTEEEETT-------EEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECST
T ss_pred             CCC-CCCCCeEEcCCCCEEEEecCCeecCCC-------eEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCC
Confidence            456 77889977 578999999999998865       88655  68988777899999998764     6799999999


Q ss_pred             Cc
Q psy5750         244 FS  245 (286)
Q Consensus       244 y~  245 (286)
                      |.
T Consensus        82 ~~   83 (99)
T 1ob1_C           82 DS   83 (99)
T ss_dssp             TC
T ss_pred             Cc
Confidence            76

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.79  E-value=9.4e-06  Score=49.11  Aligned_cols=36  Identities=22%  Similarity=0.591  Sum_probs=30.7

Q ss_pred             CCCCCCC---CCCCCCCeeeeCC--CCCeEecCCCccccccc
Q psy5750          67 NDDPCKN---FFCVANSSCIVED--DKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~---~~C~~~~~C~~~~--g~~~C~C~~g~~~~~c~  103 (286)
                      ++++|.+   +||.+ ++|+...  ++|.|.|++||+|..|+
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCC
Confidence            5678888   89998 8999754  68999999999988776

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.79  E-value=1.6e-05  Score=52.99  Aligned_cols=36  Identities=28%  Similarity=0.605  Sum_probs=29.9

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEe-CCCCccc
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQ-CRPGFTG  148 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~-C~~G~~g  148 (286)
                      ++||||....++|..++.|+|+.++|+|. +..||.+
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCcccc
Confidence            36899987678898888999999999998 4557774

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.78  E-value=1.8e-05  Score=61.78  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=24.4

Q ss_pred             CCCCCCeeeeCC--CCCeE-ecCCCccccccc
Q psy5750          75 FCVANSSCIVED--DKPTC-ICNRGFQQLYSE  103 (286)
Q Consensus        75 ~C~~~~~C~~~~--g~~~C-~C~~g~~~~~c~  103 (286)
                      ||.++++|....  +.++| .|+++|+|..|+
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce   33 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE   33 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCc
Confidence            688899998765  57899 799999988776

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.75  E-value=3.2e-06  Score=52.76  Aligned_cols=30  Identities=40%  Similarity=0.965  Sum_probs=25.3

Q ss_pred             CCCCCCeeee----CCCCeeeecCCCCcCCCCCcCC
Q psy5750         222 ICNNNADCIN----RPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       222 ~C~~~~~C~n----~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .|.++++|++    ..++|.|.|++||.|.  .||.
T Consensus        15 pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~--~Ce~   48 (52)
T 3ca7_A           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQ--RCEY   48 (52)
T ss_dssp             TSCTTCEEEEEEETTEEEEEEECCTTEEST--TSCE
T ss_pred             cCCCCCEEecCccCCCCCEEEECCCCCcCC--CCcc
Confidence            3888999997    3568999999999998  8854

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.67  E-value=1.4e-05  Score=52.91  Aligned_cols=48  Identities=25%  Similarity=0.501  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCCCCCccccCCC-CceeeCCCCCCCCCCCCcccCCccccCCCcCC
Q psy5750         163 PTSPCESDPRACNPPHSTCTNLTD-YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMN  218 (286)
Q Consensus       163 ~~~~C~~~~~~C~~~~~~C~~~~g-~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~  218 (286)
                      ++++|......|   ...|+++.+ +|.|.|++||.+..     ++..|.++|||..
T Consensus         4 d~~eC~~~nggC---~h~C~n~~g~s~~C~C~~Gy~L~~-----D~~tC~d~dec~C   52 (69)
T 1kli_L            4 DQLICVNENGGC---EQYCSDHTGTKRSCRCHEGYSLLA-----DGVSCTPTVEYPC   52 (69)
T ss_dssp             CCCCTTSGGGGC---SSEEEEETTTEEEEECCTTEEECT-----TSSCEEECSSSCT
T ss_pred             ccccccCCCCCc---CCEeEcCCCCCEEEeCCCCCeECC-----CCCcccCcccccC
Confidence            488898765678   468999888 89999999998763     3458999999853

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.64  E-value=5.2e-05  Score=53.03  Aligned_cols=68  Identities=24%  Similarity=0.624  Sum_probs=56.2

Q ss_pred             CCCCCCCeeecC-CCCeeEeCCCCcccCCCceecccCCCCCCC--CCCCCCCCCCCCCCCccccCC-----CCceeeCCC
Q psy5750         123 DLCHKNAMCFNE-IGSYSCQCRPGFTGNGHQCTEITVPQTGPT--SPCESDPRACNPPHSTCTNLT-----DYRTCNCDP  194 (286)
Q Consensus       123 ~~C~~~~~C~~~-~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~--~~C~~~~~~C~~~~~~C~~~~-----g~~~C~C~~  194 (286)
                      ..|..++.|... .+...|+|.+||.+++..|..        +  ..|+..+..| ..++.|+...     +...|.|.+
T Consensus        10 ~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~--------~~~~sC~~nNGGC-d~nA~C~~~~~~~~~~ki~C~C~~   80 (99)
T 1ob1_C           10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVE--------NPNPTCNENNGGC-DADAKCTEEDSGSNGKKITCECTK   80 (99)
T ss_dssp             CCCCTTEEEECCTTSCCEEEECTTEEEETTEEEE--------CSCCCSTTGGGGC-CTTEEEECCSCSSSSCCCEEEECS
T ss_pred             CCCCCCCCeEEcCCCCEEEEecCCeecCCCeEee--------CCCCChhhcCCCc-CCCceeEecCCcccCCceEeEeCC
Confidence            567888999874 688999999999999999987        4  5788766779 8899998764     578999999


Q ss_pred             CCCCC
Q psy5750         195 GYQKD  199 (286)
Q Consensus       195 G~~g~  199 (286)
                      ||.-.
T Consensus        81 g~~~~   85 (99)
T 1ob1_C           81 PDSYP   85 (99)
T ss_dssp             TTCCE
T ss_pred             CCccc
Confidence            97643

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.62  E-value=1.6e-05  Score=49.65  Aligned_cols=36  Identities=28%  Similarity=0.723  Sum_probs=29.2

Q ss_pred             CCCCCCCCeeeeCCC-CeeeecCCCCc--CCCCCcCCCCee
Q psy5750         220 PPICNNNADCINRPG-TYQCQCKRGFS--GDGFNCEEGKYC  257 (286)
Q Consensus       220 ~~~C~~~~~C~n~~g-~y~C~C~~Gy~--gdg~~C~~~~~c  257 (286)
                      ++.|.+  .|+|++| +|.|.|++||+  .|+++|++.++|
T Consensus         6 nggC~~--~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec   44 (53)
T 2bz6_L            6 NGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             GGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCCcCC--EeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence            344654  7999999 79999999998  688899777766

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.60  E-value=0.00013  Score=51.38  Aligned_cols=68  Identities=26%  Similarity=0.560  Sum_probs=57.1

Q ss_pred             CCCCCCCeeec-CCCCeeEeCCCCcccCCCceecccCCCCCCCCC-CCCCCCCCCCCCCccccCC-CCceeeCCCCCCCC
Q psy5750         123 DLCHKNAMCFN-EIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSP-CESDPRACNPPHSTCTNLT-DYRTCNCDPGYQKD  199 (286)
Q Consensus       123 ~~C~~~~~C~~-~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~-C~~~~~~C~~~~~~C~~~~-g~~~C~C~~G~~g~  199 (286)
                      ..|..++.|.. ..|...|+|..||.+++..|..        +++ |......| ..++.|+... ..-.|.|..+|.-.
T Consensus        16 t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~--------~Np~C~~nNGGC-d~nAeC~~~~~~ki~C~C~~~~~~~   86 (105)
T 1n1i_A           16 TNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVP--------ASITCEENNGGC-APEAECTMDDKKEVECKCTKEGSEP   86 (105)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECTTEEECSSSEEE--------CCCCTTSGGGGS-CTTSEEEECTTSCEEEECCSTTCCE
T ss_pred             CCCCCCCCeEECCCCCEeEEEECCeeccCCEEEE--------CCcchhhcCCCc-CCCcEeEECCCCEEEeECCCCCCcc
Confidence            46788999988 6788999999999999999998        677 87766789 8899998864 78899999997543

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.60  E-value=2.3e-05  Score=48.53  Aligned_cols=39  Identities=18%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcC
Q psy5750         171 PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECM  217 (286)
Q Consensus       171 ~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~  217 (286)
                      +..|   ...|+++.++|+|.|++||.+..     ++..|.|+|||.
T Consensus         5 ng~C---~~~C~n~~gs~~C~C~~Gy~L~~-----d~~tC~dide~p   43 (51)
T 1kig_L            5 NGGC---DQFCREERSEVRCSCAHGYVLGD-----DSKSCVSTERFP   43 (51)
T ss_dssp             TTSS---SSCCCEETTEECCCCCTTEEECT-----TSSCEEECSSSC
T ss_pred             CCCc---CCEeEcCCCCeEEeCCCCcEECC-----CCCccccCCccc
Confidence            3567   35799999999999999998652     344899999984

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.44  E-value=1.9e-05  Score=72.21  Aligned_cols=74  Identities=31%  Similarity=0.740  Sum_probs=34.6

Q ss_pred             eEecCCCcccccccccCCCCCCCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCC
Q psy5750          90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCES  169 (286)
Q Consensus        90 ~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~  169 (286)
                      .+.|..+|.+..|+           +++|..   +|.+ +.|++.   +.|.|.+||+|  ..|+         ++.|..
T Consensus       378 p~~C~~~~~g~~c~-----------~~~C~~---~C~n-G~C~~~---~~C~C~~G~~G--~~C~---------~~~C~~  428 (463)
T 2wg3_C          378 PEECRATVQPAQTL-----------TSECSR---LCRN-GYCTPT---GKCCCSPGWEG--DFCR---------TAKCEP  428 (463)
T ss_dssp             CGGGCCCCCCCCCC-----------CCHHHH---HCCS-EEECTT---SCEEECTTEES--TTSC---------EECC--
T ss_pred             cccCCCCCcCCCCc-----------cccccC---CCCC-CccCCC---CeECCCCCcCC--CcCC---------cCcCCC
Confidence            45677788766443           355653   4875 799764   48999999999  7885         356764


Q ss_pred             CCCCCCCCCCccccCCCCceeeCCCCCCCC
Q psy5750         170 DPRACNPPHSTCTNLTDYRTCNCDPGYQKD  199 (286)
Q Consensus       170 ~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~  199 (286)
                         +| .++++|++.   +.|.|.+||+|.
T Consensus       429 ---~C-~~~g~C~~~---~~C~C~~G~~G~  451 (463)
T 2wg3_C          429 ---AC-RHGGVCVRP---NKCLCKKGYLGP  451 (463)
T ss_dssp             ------------------------------
T ss_pred             ---CC-CCCCEECCC---CEEECCCCcccC
Confidence               78 888899864   699999999998

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.43  E-value=3.5e-05  Score=59.95  Aligned_cols=41  Identities=29%  Similarity=0.776  Sum_probs=33.8

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCCCeee
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL  258 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~~~c~  258 (286)
                      ++|...  .|.++++|++..++|+|.|++||.|+  .||..++|.
T Consensus       120 ~~c~~~--~C~~~g~C~~~~~~~~c~C~~g~~G~--~Ce~~~~c~  160 (162)
T 1g1s_A          120 ASCQDM--SCSKQGECLETIGNYTCSCYPGFYGP--ECEYVRDDD  160 (162)
T ss_dssp             CCCCTT--GGGGSEEEEECSSSEEEEECTTEEST--TSCEECC--
T ss_pred             CCCcCC--CCCCCCEEecCCCCceEeCCCCCcCc--ccccCcccC
Confidence            456654  38888999999999999999999998  898888774

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.41  E-value=0.00012  Score=45.54  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=27.7

Q ss_pred             CCCCCCCC----------CCCCCCCeeeeCCCCCeEecCCCcccc
Q psy5750          66 VNDDPCKN----------FFCVANSSCIVEDDKPTCICNRGFQQL  100 (286)
Q Consensus        66 ~~~~~C~~----------~~C~~~~~C~~~~g~~~C~C~~g~~~~  100 (286)
                      .++|+|..          .+|.  ..|+|+.++|.|.|++||.+.
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~   44 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQ   44 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEEC
T ss_pred             CccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeEC
Confidence            36788875          5786  499999999999999999865

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.38  E-value=6.1e-05  Score=46.96  Aligned_cols=31  Identities=26%  Similarity=0.828  Sum_probs=26.8

Q ss_pred             CCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCC
Q psy5750         221 PICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       221 ~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      ..|.++++|+  +..++|.|.|++||+|.  .||.
T Consensus        12 ~pC~nGG~C~~~~~~~~~~C~C~~GytG~--~Ce~   44 (53)
T 1nql_B           12 GYCLHDGVCMYIEALDKYACNCVVGYIGE--RCQY   44 (53)
T ss_dssp             CEECTTCEEEEETTTTEEEEEECTTEEST--TSCE
T ss_pred             CCCCCCeEEeeecCCCCEEEecCCCCcCC--CCCc
Confidence            3599999998  67889999999999998  8854

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.27  E-value=3.5e-05  Score=47.90  Aligned_cols=31  Identities=39%  Similarity=0.989  Sum_probs=25.9

Q ss_pred             CCCCCCCeeec----CCCCeeEeCCCCcccCCCceec
Q psy5750         123 DLCHKNAMCFN----EIGSYSCQCRPGFTGNGHQCTE  155 (286)
Q Consensus       123 ~~C~~~~~C~~----~~g~~~C~C~~G~~g~~~~C~~  155 (286)
                      ++|.++++|++    ..++|.|.|++||+|  ..|+.
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G--~~Ce~   48 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMG--QRCEY   48 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEES--TTSCE
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcC--CCCcc
Confidence            67888999986    356899999999999  77764

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.25  E-value=6.1e-05  Score=46.97  Aligned_cols=38  Identities=29%  Similarity=0.588  Sum_probs=30.1

Q ss_pred             CCCCCCCCccccCCC-CceeeCCCCCCCCCCCCcccCCccccCCCcC
Q psy5750         172 RACNPPHSTCTNLTD-YRTCNCDPGYQKDYLDDRRVAFVCTDVDECM  217 (286)
Q Consensus       172 ~~C~~~~~~C~~~~g-~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~  217 (286)
                      ..|   ...|+++.+ +|+|.|++||.+..     ++..|.|+|||.
T Consensus         7 ggC---~~~C~n~~ggs~~C~C~~Gy~L~~-----Dg~tC~d~dec~   45 (53)
T 2bz6_L            7 GGC---EQYCSDHTGTKRSCRCHEGYSLLA-----DGVSCTPTVEYP   45 (53)
T ss_dssp             GGC---SSEEEEETTTEEEEECCTTEEECT-----TSSCEEECSSSC
T ss_pred             CCc---CCEeEcCCCCCEEeeCCCCCEECC-----CCCcccCCcccc
Confidence            456   357999888 79999999998763     345899999995

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.15  E-value=0.00012  Score=45.64  Aligned_cols=31  Identities=23%  Similarity=0.556  Sum_probs=27.2

Q ss_pred             CCCCCCCCeee--eCCCCCeEecCCCccccccc
Q psy5750          73 NFFCVANSSCI--VEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        73 ~~~C~~~~~C~--~~~g~~~C~C~~g~~~~~c~  103 (286)
                      .+||.++++|+  +..++|.|.|++||+|..|+
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce   43 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   43 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCC
Confidence            37999999998  56778999999999998776

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.12  E-value=0.00018  Score=45.82  Aligned_cols=33  Identities=24%  Similarity=0.639  Sum_probs=26.1

Q ss_pred             CCCCCCCCeeeeCC-CCeeeecCCCCc--CCCCCcCCC
Q psy5750         220 PPICNNNADCINRP-GTYQCQCKRGFS--GDGFNCEEG  254 (286)
Q Consensus       220 ~~~C~~~~~C~n~~-g~y~C~C~~Gy~--gdg~~C~~~  254 (286)
                      .+.|.+  .|+|++ |+|.|.|++||.  .|+++|++.
T Consensus         6 nggC~~--~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            6 NGRCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             GGGCSS--EEEECSTTCEEEECCTTEEECTTSSCEEES
T ss_pred             CCCcCC--EeEeCCCCCEEeeCCCCcEECCCCCcccCC
Confidence            344654  799999 699999999998  578888553

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=97.10  E-value=0.00022  Score=55.90  Aligned_cols=42  Identities=31%  Similarity=0.846  Sum_probs=34.4

Q ss_pred             ccccCCCcCCCCCC---CCCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         209 VCTDVDECMNYPPI---CNNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       209 ~C~d~deC~~~~~~---C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      .+.+++||...++.   |.+  .|+|++|+|.|.|++||.  +++++|+
T Consensus       120 ~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          120 AAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             EEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             eccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccc
Confidence            35789999876543   875  799999999999999998  5777774

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.03  E-value=0.00027  Score=65.59  Aligned_cols=104  Identities=17%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CeEecCCCcccccccccCC--CCCCCccCCCcCCCCCCCCCCCeeecC----CCCeeEeCCCCcccCCCceecccCC---
Q psy5750          89 PTCICNRGFQQLYSEDRLQ--DDFGCFDINECNAGTDLCHKNAMCFNE----IGSYSCQCRPGFTGNGHQCTEITVP---  159 (286)
Q Consensus        89 ~~C~C~~g~~~~~c~~~~~--~~~~C~~~~~C~~~~~~C~~~~~C~~~----~g~~~C~C~~G~~g~~~~C~~~~~~---  159 (286)
                      ..|.|.++|.|..|..-..  -+..|...+.|..  .+|..++.|.+.    ...+.|.|++||+|  ..|+.....   
T Consensus       407 ~~C~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~--C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G--~~Ce~C~~G~~g  482 (525)
T 4aqs_A          407 GQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS--CACNPLGTIPGGNPCDSETGYCYCKRLVTG--QRCDQCLPQHWG  482 (525)
T ss_dssp             SCCCBCTTEETTTTCEECTTEECCCTTSTTSSEE--CCCCTTTBCCSSCCBCTTTCCBCBCTTCCS--TTTCC-------
T ss_pred             CccCCCCCCCCCcccCCCCCCcCCCCCCCCCCcc--CCCCCCceecCCCcccCCCCEEECCCCCcC--CCcccCCCCccC
Confidence            3455555555544421000  0122333444543  455555554432    23458999999998  677521000   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccC--CCCceeeCCCCCCCC
Q psy5750         160 QTGPTSPCESDPRACNPPHSTCTNL--TDYRTCNCDPGYQKD  199 (286)
Q Consensus       160 ~~~~~~~C~~~~~~C~~~~~~C~~~--~g~~~C~C~~G~~g~  199 (286)
                      ....++.|..  .+| .+++.+...  ...++|.|++||+|.
T Consensus       483 ~~~~~~~C~~--C~C-~~~gs~~~~C~~~tG~C~C~~G~~G~  521 (525)
T 4aqs_A          483 LSNDLDGCRP--CDC-DLGGALNNSCSEDSGQCSCLPHMIGR  521 (525)
T ss_dssp             ------------------------------------------
T ss_pred             CCCCCCCCcC--CCC-CCCCccCCccCCCCCeeECCCCCcCC
Confidence            0112455654  456 555554432  234579999999998

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.83  E-value=0.00067  Score=60.55  Aligned_cols=110  Identities=18%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             CCCCC-CeeeeCCCCCeEecCCCcccccccccCCCCCCCccCCCcCCCC--CCCCCCCee-ecCCCCeeEe-CCCCcccC
Q psy5750          75 FCVAN-SSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGT--DLCHKNAMC-FNEIGSYSCQ-CRPGFTGN  149 (286)
Q Consensus        75 ~C~~~-~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~~~~C~~~~--~~C~~~~~C-~~~~g~~~C~-C~~G~~g~  149 (286)
                      .|..+ +.|....+.+.|.|+.++.|..|+.             |..+.  .++..+..| +.....+.|. |.-++.+ 
T Consensus       298 ~CnGHas~C~~~~g~~~C~C~~~ttG~~CE~-------------C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g-  363 (426)
T 3zyj_B          298 KCNLHATVCVYDNSKLTCECEHNTTGPDCGK-------------CKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGT-  363 (426)
T ss_dssp             CCSSSCSCEEEETTEEEECCCTTEESSSSCE-------------ECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-----
T ss_pred             cCCCchhhcCCCCCCceeeCCCCCcCCCccc-------------cccccccCcccCCcccccCCCCCCcccCCCCCCCc-
Confidence            35444 5888877788999999999987762             22211  234332111 1122334453 3333333 


Q ss_pred             CCceecccCCCCCCCCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCCCCCCCCCCCee
Q psy5750         150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC  229 (286)
Q Consensus       150 ~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~~~~~C~~~~~C  229 (286)
                       ..|..              ...+| .++++|.+..   +|.|++||.|.         .|+.   |     .|.+++.|
T Consensus       364 -~~CD~--------------~t~~C-~ngg~C~~~~---~C~C~~G~~G~---------~Ce~---c-----~C~~~g~C  407 (426)
T 3zyj_B          364 -NVCDN--------------ELLHC-QNGGTCHNNV---RCLCPAAYTGI---------LCEK---L-----RCEEAGSC  407 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -Ccccc--------------CcccC-CCCCCcCCCC---CCcCCCCCcCC---------CCcC---C-----CCCCCCcc
Confidence             45643              22577 7788898755   99999999998         4431   1     37777777


Q ss_pred             eeCCC
Q psy5750         230 INRPG  234 (286)
Q Consensus       230 ~n~~g  234 (286)
                      ....|
T Consensus       408 ~~~~G  412 (426)
T 3zyj_B          408 GSDSG  412 (426)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            65544

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.80  E-value=0.00099  Score=59.45  Aligned_cols=94  Identities=26%  Similarity=0.593  Sum_probs=30.3

Q ss_pred             CCCC-CeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCC--CCCCCCCCc-cccCCCCceee-CCCCCCCC
Q psy5750         125 CHKN-AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP--RACNPPHST-CTNLTDYRTCN-CDPGYQKD  199 (286)
Q Consensus       125 C~~~-~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~--~~C~~~~~~-C~~~~g~~~C~-C~~G~~g~  199 (286)
                      |..+ ..|....+.+.|.|+.++.|  ..|+.           |..+-  .++ ..+.. ++.....+.|. |.-++.+.
T Consensus       299 CnGHas~C~~~~g~~~C~C~~~ttG--~~CE~-----------C~pgy~~~P~-~~gt~~p~~~g~~~~C~pC~Cn~~g~  364 (426)
T 3zyj_B          299 CNLHATVCVYDNSKLTCECEHNTTG--PDCGK-----------CKKNYQGRPW-SPGSYLPIPKGAANACIPSISSIGTN  364 (426)
T ss_dssp             CSSSCSCEEEETTEEEECCCTTEES--SSSCE-----------ECTTCCSSCC-CCCBCCSSSSCBCCCCCCCCC-----
T ss_pred             CCCchhhcCCCCCCceeeCCCCCcC--CCccc-----------cccccccCcc-cCCcccccCCCCCCcccCCCCCCCcC
Confidence            4434 46877777899999999999  77765           22211  233 22211 12223344553 33333333


Q ss_pred             CCCCcccCCccccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         200 YLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       200 ~~~~~~~~~~C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                               .|      ......|.++++|.+..   .|+|++||.|.  .|+
T Consensus       365 ---------~C------D~~t~~C~ngg~C~~~~---~C~C~~G~~G~--~Ce  397 (426)
T 3zyj_B          365 ---------VC------DNELLHCQNGGTCHNNV---RCLCPAAYTGI--LCE  397 (426)
T ss_dssp             -----------------------------------------------------
T ss_pred             ---------cc------ccCcccCCCCCCcCCCC---CCcCCCCCcCC--CCc
Confidence                     44      22224588889998765   89999999998  674

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.69  E-value=0.002  Score=47.51  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=41.4

Q ss_pred             CCCCCCeeeeCC--CCC-eEecCCCcccccccccCCCCCCCccCC-CcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCC
Q psy5750          75 FCVANSSCIVED--DKP-TCICNRGFQQLYSEDRLQDDFGCFDIN-ECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG  150 (286)
Q Consensus        75 ~C~~~~~C~~~~--g~~-~C~C~~g~~~~~c~~~~~~~~~C~~~~-~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~  150 (286)
                      ||.++++|++..  .+| +|.|++||.|..|+         .+++ +|..            .....|++.+..++.|  
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce---------~~~~~~C~~------------g~G~~YrG~~~~t~sG--   58 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE---------IDKSKTCYE------------GNGHFYRGKASTDTMG--   58 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSC---------EESSCCSBC------------SSCTTCCSCCCBBTTS--
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCcccc---------ccCcCCCcc------------cccccceeeccccccC--
Confidence            799999999884  566 99999999988887         3332 2322            1234678888777777  


Q ss_pred             Cceec
Q psy5750         151 HQCTE  155 (286)
Q Consensus       151 ~~C~~  155 (286)
                      ..|..
T Consensus        59 ~~Cq~   63 (122)
T 2fd6_A           59 RPCLP   63 (122)
T ss_dssp             CBBCC
T ss_pred             CcccC
Confidence            67765

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.64  E-value=0.00075  Score=42.77  Aligned_cols=30  Identities=40%  Similarity=0.965  Sum_probs=25.0

Q ss_pred             CCCCCCeeee----CCCCeeeecCCCCcCCCCCcCC
Q psy5750         222 ICNNNADCIN----RPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       222 ~C~~~~~C~n----~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .|.++|+|+.    ..++|.|.|++||.|.  +||.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~--~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQ--RCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESS--SSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccC--CCcc
Confidence            3889999983    4568999999999998  8864

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.38  E-value=0.0017  Score=60.35  Aligned_cols=39  Identities=38%  Similarity=1.009  Sum_probs=34.3

Q ss_pred             CCCcCCCCCCCCCCCeeee-CCCCeeeecC-CCCcCCCCCcCCCC
Q psy5750         213 VDECMNYPPICNNNADCIN-RPGTYQCQCK-RGFSGDGFNCEEGK  255 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n-~~g~y~C~C~-~Gy~gdg~~C~~~~  255 (286)
                      +|+|...|  |.++|+|++ ..++|.|.|+ +||+|.  .||...
T Consensus         2 ~d~C~~~P--C~ngG~C~~~~~~~y~C~C~~~G~~G~--~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYYP--CQHQGICVRFGLDRYQCDCTRTGYSGP--NCTIPE   42 (553)
T ss_dssp             CCGGGGCC--CCTTCEEEEETTTEEEEECTTSSEETT--TTCEEC
T ss_pred             CCcCCCCC--CCCCCCcCCCCCCceEeeCCCCCcCCC--CCCCCc
Confidence            57898876  999999999 8999999999 999998  897644

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.32  E-value=0.0011  Score=51.24  Aligned_cols=41  Identities=34%  Similarity=0.899  Sum_probs=34.3

Q ss_pred             CCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceecccCCCCCCCCCCC
Q psy5750         116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCE  168 (286)
Q Consensus       116 ~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~  168 (286)
                      ++|..  .+|.+++.|++..++|.|.|++||.|  ..|+.        +++|.
T Consensus       120 ~~c~~--~~C~~~g~C~~~~~~~~c~C~~g~~G--~~Ce~--------~~~c~  160 (162)
T 1g1s_A          120 ASCQD--MSCSKQGECLETIGNYTCSCYPGFYG--PECEY--------VRDDD  160 (162)
T ss_dssp             CCCCT--TGGGGSEEEEECSSSEEEEECTTEES--TTSCE--------ECC--
T ss_pred             CCCcC--CCCCCCCEEecCCCCceEeCCCCCcC--ccccc--------CcccC
Confidence            56765  78998999999999999999999999  78988        66775

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.31  E-value=0.0016  Score=60.50  Aligned_cols=37  Identities=22%  Similarity=0.532  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCCCeeee-CCCCCeEecC-CCcccccccc
Q psy5750          68 DDPCKNFFCVANSSCIV-EDDKPTCICN-RGFQQLYSED  104 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~-~~g~~~C~C~-~g~~~~~c~~  104 (286)
                      +|+|.++||.++++|++ ..++|.|.|. +||.|..|+.
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCCC
Confidence            57899999999999999 8999999999 9999998873

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.26  E-value=0.0028  Score=48.81  Aligned_cols=42  Identities=36%  Similarity=0.740  Sum_probs=32.6

Q ss_pred             ccccCCCcCCC-CCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         209 VCTDVDECMNY-PPICNNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       209 ~C~d~deC~~~-~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      .+.++|||... ...|.  ..|.|.+++|.|.|++||.  +++++|+
T Consensus       113 ~~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          113 VATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCG  157 (159)
T ss_dssp             EEEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             ecccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECCCCCccc
Confidence            35788999763 24575  4899999999999999999  5677773

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=96.20  E-value=0.0018  Score=41.16  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=27.3

Q ss_pred             CCCCCCCCccccCC-CCceeeCCCCCCCCCCCCcccCCccccCCC
Q psy5750         172 RACNPPHSTCTNLT-DYRTCNCDPGYQKDYLDDRRVAFVCTDVDE  215 (286)
Q Consensus       172 ~~C~~~~~~C~~~~-g~~~C~C~~G~~g~~~~~~~~~~~C~d~de  215 (286)
                      ..|   ...|+++. ++|.|.|++||.+..     ++..|.|+++
T Consensus         7 ggC---~~~C~n~~~gs~~C~C~~Gy~L~~-----D~~tC~d~~~   43 (59)
T 2wph_E            7 GRC---EQFCKNSADNKVVCSCTEGYRLAE-----NQKSCEPAVP   43 (59)
T ss_dssp             GGC---SSEEEECSTTCEEEECCTTEEECT-----TSSCEEESSS
T ss_pred             CCc---CCEeEeCCCCCEEeeCCCCcEECC-----CCCcccCCCC
Confidence            456   35799988 699999999998763     3457887764

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.20  E-value=0.0021  Score=59.93  Aligned_cols=38  Identities=34%  Similarity=1.024  Sum_probs=32.2

Q ss_pred             CCCcCCCCCCCCCCCeeee-CCCCeeeecC-CCCcCCCCCcCCC
Q psy5750         213 VDECMNYPPICNNNADCIN-RPGTYQCQCK-RGFSGDGFNCEEG  254 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n-~~g~y~C~C~-~Gy~gdg~~C~~~  254 (286)
                      +|+|...|  |.++|+|++ ..++|.|.|+ +||+|.  .|+..
T Consensus         1 vd~C~s~P--C~ngG~C~~~~~~~y~C~C~~~G~~G~--~Ce~~   40 (587)
T 3nt1_A            1 ANPCCSNP--CQNRGECMSTGFDQYKCDCTRTGFYGE--NCTTP   40 (587)
T ss_dssp             CCTTTTCC--CCTTCEEEEEETTEEEEECTTSSEETT--TTCEE
T ss_pred             CCCCCCCC--CCCCCEeeCCCCCCeEEecCCCCccCC--CCCCc
Confidence            47898765  999999996 4589999999 999988  89654

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.10  E-value=0.0019  Score=40.86  Aligned_cols=29  Identities=24%  Similarity=0.667  Sum_probs=24.8

Q ss_pred             CCCCCCeeee----CCCCCeEecCCCccccccc
Q psy5750          75 FCVANSSCIV----EDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        75 ~C~~~~~C~~----~~g~~~C~C~~g~~~~~c~  103 (286)
                      ||.++++|+.    ..+.|.|.|++||.|..|+
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCc
Confidence            8999999984    3457899999999998776

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.02  E-value=0.0033  Score=58.65  Aligned_cols=37  Identities=24%  Similarity=0.540  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCeeee-CCCCCeEecC-CCcccccccc
Q psy5750          68 DDPCKNFFCVANSSCIV-EDDKPTCICN-RGFQQLYSED  104 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~-~~g~~~C~C~-~g~~~~~c~~  104 (286)
                      +++|.++||.++++|++ ..++|.|.|+ +||.|..|+.
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCCC
Confidence            47899999999999996 4689999999 9999998874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.74  E-value=0.0033  Score=54.94  Aligned_cols=37  Identities=35%  Similarity=0.918  Sum_probs=22.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      +|||. .++.|.+  .|+|++|+|.|.|++||.  .|+++|.
T Consensus         1 i~ec~-~~~~C~~--~C~n~~g~~~C~C~~g~~l~~d~~~C~   39 (349)
T 3v64_C            1 VNECA-EEGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCK   39 (349)
T ss_dssp             ---------CCSS--EECCC---CCEECCTTEEECTTSSCEE
T ss_pred             CcccC-CCCCCcC--eeecCCCCeEEECCCCccCCCCCCccc
Confidence            57887 4567876  899999999999999998  5777884

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.51  E-value=0.0081  Score=46.81  Aligned_cols=41  Identities=37%  Similarity=0.970  Sum_probs=32.3

Q ss_pred             ccCCCcCCCCCC---CCCCCeeecCCCCeeEeCCCCcc--cCCCceec
Q psy5750         113 FDINECNAGTDL---CHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTE  155 (286)
Q Consensus       113 ~~~~~C~~~~~~---C~~~~~C~~~~g~~~C~C~~G~~--g~~~~C~~  155 (286)
                      .++++|......   |.+  .|++..++|.|.|++||.  +++..|.+
T Consensus       122 ~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          122 EDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             EECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             cccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCcccc
Confidence            678899863332   865  799999999999999998  45677765

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=95.44  E-value=0.012  Score=35.81  Aligned_cols=32  Identities=25%  Similarity=0.695  Sum_probs=25.4

Q ss_pred             CCCCCCCeeeeC--CCCeeeecCCCCcCCCCCcCCCC
Q psy5750         221 PICNNNADCINR--PGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       221 ~~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      ..|.++ +|...  .+.+.|.|++||.|.  .||..+
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~--RCe~~d   47 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGA--RCEHAD   47 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCccc--CCCcee
Confidence            458876 99753  478999999999999  997654

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=94.99  E-value=0.027  Score=41.30  Aligned_cols=30  Identities=23%  Similarity=0.667  Sum_probs=25.2

Q ss_pred             CCCCCCeeecCC--CCe-eEeCCCCcccCCCceec
Q psy5750         124 LCHKNAMCFNEI--GSY-SCQCRPGFTGNGHQCTE  155 (286)
Q Consensus       124 ~C~~~~~C~~~~--g~~-~C~C~~G~~g~~~~C~~  155 (286)
                      +|.++++|++..  .+| +|.|++||+|  ..|+.
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G--~~Ce~   34 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGG--QHCEI   34 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEES--TTSCE
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCC--ccccc
Confidence            688899998874  556 9999999999  88875

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=94.98  E-value=0.011  Score=36.10  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=24.5

Q ss_pred             CCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         221 PICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       221 ~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ..|.+ |+|.  ...+.+.|.|++||.|+  .||..
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~--RCe~~   46 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGA--RCERV   46 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETT--TTCEE
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccC--CCCee
Confidence            45887 6895  45677999999999999  88643

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.92  E-value=0.006  Score=46.68  Aligned_cols=36  Identities=36%  Similarity=1.012  Sum_probs=30.1

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCC
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      ++|...  .|.+++.|.+..++|.|.|.+||.|+  .||.
T Consensus       120 ~~~~~~--pc~~~g~C~~~~~~~~c~C~~g~~g~--~Ce~  155 (157)
T 1g1t_A          120 AACTNT--SCSGHGECVETINNYTCKCDPGFSGL--KCEQ  155 (157)
T ss_dssp             CCCCTT--GGGGSEEEEEETTEEEEEECTTEEST--TSCE
T ss_pred             CCCCCC--CCCCCCEeecCCCCeeEECCCCccCc--cccc
Confidence            455543  38888999999999999999999999  8854

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=94.57  E-value=0.02  Score=48.38  Aligned_cols=42  Identities=24%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             cCCCcCCC-CCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCcCCCC
Q psy5750         212 DVDECMNY-PPICNNNADCINRPGTYQCQCKRGFSG--DGFNCEEGK  255 (286)
Q Consensus       212 d~deC~~~-~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C~~~~  255 (286)
                      +.|||... ++.|.+  .|.|+.++|.|.|.+||..  |+++|...+
T Consensus         1 ~~~eC~~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~   45 (283)
T 3f1s_B            1 AKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHD   45 (283)
T ss_dssp             --CCCCSSCSSSCSS--BCCCCTTSCCCBCCTTEEECTTSSCEEECS
T ss_pred             CCCccCCCCCCCCCC--EeeCCCCCeEecCCCCcccCCCCCcccccc
Confidence            46889876 677875  7999999999999999984  566675433

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=94.44  E-value=0.048  Score=33.12  Aligned_cols=38  Identities=21%  Similarity=0.698  Sum_probs=26.9

Q ss_pred             CCCcCCC-CCCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCC
Q psy5750         213 VDECMNY-PPICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       213 ~deC~~~-~~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .++|... ...|.+ ++|.  ...+.+.|.|+.||.|+  .||.
T Consensus         9 ~~~C~~~~~~yC~n-G~C~~i~~~~~~~C~C~~gy~G~--RCe~   49 (50)
T 2rnl_A            9 KNPCNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGE--RCGE   49 (50)
T ss_dssp             CCTTTTTGGGTCSS-SEEEEETTTTEEEEECCSSCCSS--SCCC
T ss_pred             CcccCchhhCcCCC-CEEEEecCCCCeeEECCCCcccc--cccc
Confidence            3455421 135886 5997  45668999999999999  8853

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=94.44  E-value=0.021  Score=43.95  Aligned_cols=35  Identities=20%  Similarity=0.587  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ..|...+|..+++|++..++|.|.|.+||.|..|+
T Consensus       120 ~~~~~~~C~~~g~C~~~~~~~~c~C~~g~~g~~C~  154 (164)
T 3cfw_A          120 ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ  154 (164)
T ss_dssp             CCCCTTSSCSSEEEEEETTEEEEEECTTCBSSSSC
T ss_pred             CCCCCCcCCCCCeecccCCCceeeeCCCccccccc
Confidence            35666899999999999999999999999977665

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=94.13  E-value=0.053  Score=37.08  Aligned_cols=66  Identities=18%  Similarity=0.397  Sum_probs=52.2

Q ss_pred             CCCCCCCCccccC-CCCceeeCCCCCCCCCCCCcccCCccccC--CCcCCCCCCCCCCCeeeeCC-CCeeeecCCCCc
Q psy5750         172 RACNPPHSTCTNL-TDYRTCNCDPGYQKDYLDDRRVAFVCTDV--DECMNYPPICNNNADCINRP-GTYQCQCKRGFS  245 (286)
Q Consensus       172 ~~C~~~~~~C~~~-~g~~~C~C~~G~~g~~~~~~~~~~~C~d~--deC~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~  245 (286)
                      ..| +.++.|... .+...|+|..+|.-.+.       .|...  ..|......|++.|.|.... ..-.|+|...+.
T Consensus        10 tkc-p~NA~Cyr~~dg~EecRCllnykk~~~-------kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~~   79 (95)
T 1b9w_A           10 TNV-PENAACYRYLDGTEEWRCLLYFKEDAG-------KCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGS   79 (95)
T ss_dssp             CCC-CTTEEEEECTTSCEEEEECTTEEEETT-------EEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTTE
T ss_pred             CCC-CCCcCeEEEcCCCEEEEEECCeEecCC-------EEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCCC
Confidence            456 778899874 47889999999986544       78433  37988888899999998777 688999998754

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=94.12  E-value=0.022  Score=38.08  Aligned_cols=38  Identities=26%  Similarity=0.836  Sum_probs=26.0

Q ss_pred             CCCcCC-CCCCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCC
Q psy5750         213 VDECMN-YPPICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       213 ~deC~~-~~~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      .++|.. ..+.|.++ +|+  ...+.+.|.|++||.|+  .||.
T Consensus        37 ~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~--RCE~   77 (79)
T 1xdt_R           37 RDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGE--RCHG   77 (79)
T ss_dssp             --CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEEST--TCCE
T ss_pred             CCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccc--cccc
Confidence            456652 12458876 895  33468999999999999  8853

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=93.99  E-value=0.016  Score=44.25  Aligned_cols=36  Identities=31%  Similarity=0.695  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ..+|...||.+++.|.+....|.|.|.+||.|..|+
T Consensus       119 ~~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce  154 (157)
T 1g1t_A          119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE  154 (157)
T ss_dssp             ECCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             cCCCCCCCCCCCCEeecCCCCeeEECCCCccCcccc
Confidence            356777899999999999999999999999988776

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=93.40  E-value=0.053  Score=48.38  Aligned_cols=37  Identities=19%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCC-Cccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNR-GFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~-g~~~~~c~  103 (286)
                      ..++|..+||.++++|+..++.|.|.|+. +|.|+.|+
T Consensus       184 ~~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~  221 (410)
T 3asi_A          184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN  221 (410)
T ss_dssp             CSSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred             CCCCcccccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence            35789889999999999999999999996 99988776

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=93.28  E-value=0.11  Score=39.16  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=24.8

Q ss_pred             CCCCCCeeeeC--CCCC-eEecCCCccccccc
Q psy5750          75 FCVANSSCIVE--DDKP-TCICNRGFQQLYSE  103 (286)
Q Consensus        75 ~C~~~~~C~~~--~g~~-~C~C~~g~~~~~c~  103 (286)
                      ||.++++|+..  ...+ .|.|++||.|..|+
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Ce   45 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   45 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCcee
Confidence            89999999876  3556 89999999988777

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=93.18  E-value=0.056  Score=45.59  Aligned_cols=47  Identities=23%  Similarity=0.588  Sum_probs=36.1

Q ss_pred             CCCCCCC-CCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcCC
Q psy5750         164 TSPCESD-PRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMN  218 (286)
Q Consensus       164 ~~~C~~~-~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~~  218 (286)
                      .|+|... +..|   ...|+++.++|+|.|..||.+..     ++..|...++|.-
T Consensus         2 ~~eC~~~~~~~C---~~~C~~~~~~~~C~C~~G~~l~~-----d~~sC~p~~~c~C   49 (283)
T 3f1s_B            2 KNECHPERTDGC---QHFCLPGQESYTCSCAQGYRLGE-----DHKQCVPHDQCAC   49 (283)
T ss_dssp             -CCCCSSCSSSC---SSBCCCCTTSCCCBCCTTEEECT-----TSSCEEECSTTCT
T ss_pred             CCccCCCCCCCC---CCEeeCCCCCeEecCCCCcccCC-----CCCcccccccccc
Confidence            5788765 5778   46899999999999999998763     3347888888753

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=93.14  E-value=0.046  Score=36.53  Aligned_cols=36  Identities=31%  Similarity=0.794  Sum_probs=25.8

Q ss_pred             CCCCCC---CCCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          67 NDDPCK---NFFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~---~~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      ..++|.   .+.|.++ +|+..  .+.+.|.|.+||.|..|+
T Consensus        36 ~~~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           36 KRDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             ---CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCC
T ss_pred             cCCCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccccc
Confidence            346676   4789875 99543  467899999999988775

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=92.97  E-value=0.063  Score=40.98  Aligned_cols=41  Identities=37%  Similarity=0.749  Sum_probs=30.8

Q ss_pred             ccCCCcCCC-CCCCCCCCeeecCCCCeeEeCCCCcc--cCCCceec
Q psy5750         113 FDINECNAG-TDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTE  155 (286)
Q Consensus       113 ~~~~~C~~~-~~~C~~~~~C~~~~g~~~C~C~~G~~--g~~~~C~~  155 (286)
                      .++++|... ...|.  ..|.+..++|.|.|.+||.  +++..|.+
T Consensus       115 ~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          115 TDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             EECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             ccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            677888753 24675  3899999999999999998  44566653

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=92.91  E-value=0.099  Score=31.68  Aligned_cols=29  Identities=34%  Similarity=0.911  Sum_probs=23.5

Q ss_pred             CCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      ..|.++ +|...  .+.+.|.|++||.|..|+
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            678865 99864  467899999999988776

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=92.64  E-value=0.05  Score=33.02  Aligned_cols=29  Identities=24%  Similarity=0.914  Sum_probs=23.3

Q ss_pred             CCCCCCCeeee--CCCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIV--EDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~--~~g~~~C~C~~g~~~~~c~  103 (286)
                      +.|.+ |+|.-  ..+.+.|.|++||.|..|+
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCCCC
Confidence            67887 79963  3556899999999988776

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=92.37  E-value=0.089  Score=40.54  Aligned_cols=29  Identities=24%  Similarity=0.621  Sum_probs=21.5

Q ss_pred             CCCCCCCccccCC--CCcee-eCCCCCCCCCCC
Q psy5750         173 ACNPPHSTCTNLT--DYRTC-NCDPGYQKDYLD  202 (286)
Q Consensus       173 ~C~~~~~~C~~~~--g~~~C-~C~~G~~g~~~~  202 (286)
                      +| ++++.|....  +.++| .|+++|+|..+.
T Consensus         2 ~C-~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce   33 (162)
T 1klo_A            2 PC-PGGSSCAIVPKTKEVVCTHCPTGTAGKRCE   33 (162)
T ss_dssp             CS-CTTCCEEECSSSCCEEECSCCTTEESTTSC
T ss_pred             cC-cCcCcccccCCCCCEEeCCCCCCCcCCCCc
Confidence            45 6677887654  57889 799999998654

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=92.36  E-value=0.092  Score=46.76  Aligned_cols=40  Identities=25%  Similarity=0.706  Sum_probs=33.2

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCC-CCcCCCCCcCCCC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKR-GFSGDGFNCEEGK  255 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~-Gy~gdg~~C~~~~  255 (286)
                      ..++|...|  |.++++|++..++|.|.|+. ||.|.  .|++..
T Consensus       184 ~~~~C~~~p--C~n~g~C~~~~~~~~C~C~~~~~~G~--~C~~~~  224 (410)
T 3asi_A          184 PSTTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGP--LCNDPG  224 (410)
T ss_dssp             CSSCCCTTS--SSTTCEEEECSSSEEEECTTTSEEST--TSCEEC
T ss_pred             CCCCccccc--CCCCCEecCCCCCceEeccCCcccCC--CCCCCc
Confidence            346787754  99999999999999999996 99987  897543

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=92.24  E-value=0.11  Score=47.57  Aligned_cols=41  Identities=32%  Similarity=0.819  Sum_probs=32.5

Q ss_pred             cCCCcCCC-CCCCCCCCeeeeC-CCCeeeecCCCCcCCCCCcC
Q psy5750         212 DVDECMNY-PPICNNNADCINR-PGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       212 d~deC~~~-~~~C~~~~~C~n~-~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      .++.|... .+.|+.++.|+.. .+.|.|.|+.||.|+|..|-
T Consensus        17 ~~~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~c~   59 (551)
T 3fby_A           17 AQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG   59 (551)
T ss_dssp             BCCBCTTSSBCCCCTTEEEEECTTSCEEEEECTTEESSSSSCE
T ss_pred             ccccCCCCCCCCCCCCCeeEeCCCCCEecCCCCCCCCCCcccC
Confidence            34556543 2579999999876 67899999999999998884

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=92.14  E-value=0.27  Score=33.59  Aligned_cols=68  Identities=21%  Similarity=0.540  Sum_probs=52.9

Q ss_pred             CCCCCCCeeecCC-CCeeEeCCCCcccCCCceecccCCCCCCCCCCCCCCCCCCCCCCccccCC-CCceeeCCCCCC
Q psy5750         123 DLCHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLT-DYRTCNCDPGYQ  197 (286)
Q Consensus       123 ~~C~~~~~C~~~~-g~~~C~C~~G~~g~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~~C~~~~-g~~~C~C~~G~~  197 (286)
                      ..|..++.|.... +.-.|+|..+|.-++..|...      ....|......| ..++.|.... ..-.|.|...+.
T Consensus        10 tkcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~------~~~~C~~NNGGC-d~nA~C~~~~~~kIvC~C~~~~~   79 (95)
T 1b9w_A           10 TNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA------PNMTCKDKNGGC-APEAECKMNDKNEIVCKCTKEGS   79 (95)
T ss_dssp             CCCCTTEEEEECTTSCEEEEECTTEEEETTEEEEC------TTCCTTTGGGGS-CTTSEEEECTTSCEEEECCSTTE
T ss_pred             CCCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcC------CCCCccccCCCc-CCCcceeecCCCcEEEECCCCCC
Confidence            4688899998864 688999999999777889761      123688777788 7889998766 678899987753

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=91.56  E-value=0.15  Score=40.01  Aligned_cols=28  Identities=36%  Similarity=0.841  Sum_probs=22.9

Q ss_pred             CCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         222 ICNNNADCINRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       222 ~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      .|.++|.|+.   ...|.|++||.|.  .|+..
T Consensus       154 ~C~ngG~Cv~---P~~C~C~~Gw~G~--~C~~~  181 (188)
T 2ygo_A          154 GCRNGGFCNE---RRICECPDGFHGP--HCEGT  181 (188)
T ss_dssp             CCCTTCEECT---TSCEECCTTCBTT--TTCBC
T ss_pred             CCCCCCEeCC---CCcccCcCCCCCC--CCcCC
Confidence            4999999973   3489999999988  88654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.48  E-value=0.074  Score=46.24  Aligned_cols=32  Identities=28%  Similarity=0.705  Sum_probs=18.4

Q ss_pred             CCCCCCCCCCCCCCCCccccCCCCceeeCCCCCCCC
Q psy5750         164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKD  199 (286)
Q Consensus       164 ~~~C~~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~  199 (286)
                      +++|. .+..|   ...|.++.++|.|.|++||...
T Consensus         1 i~ec~-~~~~C---~~~C~n~~g~~~C~C~~g~~l~   32 (349)
T 3v64_C            1 VNECA-EEGYC---SQGCTNSEGAFQCWCEAGYELR   32 (349)
T ss_dssp             ---------CC---SSEECCC---CCEECCTTEEEC
T ss_pred             CcccC-CCCCC---cCeeecCCCCeEEECCCCccCC
Confidence            36776 34678   4589999999999999999875

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=91.15  E-value=0.17  Score=30.61  Aligned_cols=35  Identities=23%  Similarity=0.637  Sum_probs=26.0

Q ss_pred             CCCCCC---CCCCCCCeeee--CCCCCeEecCCCccccccc
Q psy5750          68 DDPCKN---FFCVANSSCIV--EDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~---~~C~~~~~C~~--~~g~~~C~C~~g~~~~~c~  103 (286)
                      .++|..   +.|.+ ++|.-  ..+.+.|.|++||.|..|+
T Consensus         9 ~~~C~~~~~~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A            9 KNPCNAEFQNFCIH-GECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             CCTTTTTGGGTCSS-SEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcccCchhhCcCCC-CEEEEecCCCCeeEECCCCccccccc
Confidence            455653   67885 69983  3557899999999988765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.37  E-value=0.18  Score=42.98  Aligned_cols=38  Identities=26%  Similarity=0.619  Sum_probs=28.9

Q ss_pred             cCCCcCCC---CCCCCCCCeeeeCC------CCeeeecCCCCc--CCCCCc
Q psy5750         212 DVDECMNY---PPICNNNADCINRP------GTYQCQCKRGFS--GDGFNC  251 (286)
Q Consensus       212 d~deC~~~---~~~C~~~~~C~n~~------g~y~C~C~~Gy~--gdg~~C  251 (286)
                      ..++|...   ++.|.+  .|.+.+      ++|+|.|+.||.  .|+++|
T Consensus       266 ~~n~C~~~~~~ng~Cs~--~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C  314 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQY--LCLPAPQINPHSPKFTCACPDGMLLARDMRSC  314 (316)
T ss_dssp             CCCTTSSSSSGGGGCSS--EEEECCCCSTTCCSEEEECCTTCEECTTSSCE
T ss_pred             ccccccccccCCCCcCc--ccCCCccccCCCCCeEeeCCCCCEECCCCCcc
Confidence            46788765   445864  899876      689999999998  466777

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.35  E-value=0.14  Score=48.33  Aligned_cols=41  Identities=27%  Similarity=0.663  Sum_probs=33.1

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCC-CCeeeecCCCCcC--CCCCcCCC
Q psy5750         212 DVDECMNYPPICNNNADCINRP-GTYQCQCKRGFSG--DGFNCEEG  254 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g--dg~~C~~~  254 (286)
                      .+++|......|.+  .|.+.+ ++|+|.|++||..  |+++|...
T Consensus       264 ~~n~C~~~ng~C~~--~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~  307 (628)
T 4a0p_A          264 GWNECASSNGHCSH--LCLAVPVGGFVCGCPAHYSLNADNRTCSAP  307 (628)
T ss_dssp             CCCTTTTTGGGCSS--EEEEETTTEEEEECSTTCEECTTSSCEECC
T ss_pred             cceEeccCCCCcch--hhhcCCCCCeeEEcCCCcEecccCCcCccc
Confidence            57889876666864  899998 9999999999984  77888543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=89.59  E-value=0.25  Score=42.35  Aligned_cols=40  Identities=30%  Similarity=0.727  Sum_probs=29.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCC--CeeeecCCCCc--CCCCCcCCC
Q psy5750         213 VDECMNYPPICNNNADCINRPG--TYQCQCKRGFS--GDGFNCEEG  254 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g--~y~C~C~~Gy~--gdg~~C~~~  254 (286)
                      .++|...+..|.+  .|.+.++  +|+|.|+.||.  .|+++|.++
T Consensus       267 ~n~C~~~ng~Cs~--~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~  310 (318)
T 3sov_A          267 TNPCGIDNGGCSH--LCLMSPVKPFYQCACPTGVKLLENGKTCKDG  310 (318)
T ss_dssp             CCTTTTTGGGCSS--EEEECSSTTSEEEECSTTCCBCTTSSCBCC-
T ss_pred             ccccccCCCCcce--EEecCCCCCCeEEECCCCCEECCCCCCCCCC
Confidence            4677655556754  7998876  79999999998  477888543

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=89.54  E-value=0.2  Score=39.24  Aligned_cols=27  Identities=26%  Similarity=0.435  Sum_probs=23.4

Q ss_pred             CCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      .+|.++|.|+...   +|.|++||.|..|+
T Consensus       153 ~~C~ngG~Cv~P~---~C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          153 GGCRNGGFCNERR---ICECPDGFHGPHCE  179 (188)
T ss_dssp             TCCCTTCEECTTS---CEECCTTCBTTTTC
T ss_pred             CCCCCCCEeCCCC---cccCcCCCCCCCCc
Confidence            5899999998643   89999999998887

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=88.41  E-value=0.29  Score=50.02  Aligned_cols=37  Identities=19%  Similarity=0.473  Sum_probs=33.4

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecC-CCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICN-RGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~-~g~~~~~c~  103 (286)
                      ..+.|..+||.++++|+..+.+|.|.|+ ++|.|+.|+
T Consensus      1016 ~~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~ 1053 (1245)
T 3qcw_A         1016 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 1053 (1245)
T ss_dssp             CCCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSC
T ss_pred             ccCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCcc
Confidence            4578999999999999999999999999 699998886

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=87.41  E-value=0.44  Score=35.89  Aligned_cols=30  Identities=30%  Similarity=0.844  Sum_probs=24.6

Q ss_pred             CCCCCeeeeC--CCCe-eeecCCCCcCCCCCcCCC
Q psy5750         223 CNNNADCINR--PGTY-QCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       223 C~~~~~C~n~--~g~y-~C~C~~Gy~gdg~~C~~~  254 (286)
                      |.++++|+..  ...| +|.|++||.|.  .|+..
T Consensus        15 C~NGGtC~~~~~~s~~~~C~Cp~g~~G~--~Cei~   47 (145)
T 2i9a_A           15 CLNGGTCVSNKYFSNIHWCNCPKKFGGQ--HCEID   47 (145)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEEST--TSCEE
T ss_pred             CCCCCCcCCCccccCCccccCCCCCCCC--ceecc
Confidence            9999999875  3566 89999999987  88643

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=87.39  E-value=0.33  Score=49.66  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeEecC-CCccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVEDDKPTCICN-RGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~~g~~~C~C~-~g~~~~~c~  103 (286)
                      .+.|.++||.+++.|+..+..|.|.|+ +||.|..|+
T Consensus       619 ~~~C~~~pC~ngg~C~~~~~~~~C~C~~~g~~G~~C~  655 (1245)
T 3qcw_A          619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE  655 (1245)
T ss_dssp             SCGGGSCCCCTTCEEEECSSSEEEECTTTTEESTTSC
T ss_pred             CCCCCccCCCCCCEEeCCCCCeEEECCCCCcccccCc
Confidence            577888999999999999999999999 799998875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=85.63  E-value=0.32  Score=45.85  Aligned_cols=37  Identities=30%  Similarity=0.728  Sum_probs=29.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCc
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFS--GDGFNC  251 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C  251 (286)
                      .++|...+..|.+  .|.+.+++|.|.|+.||.  .|+++|
T Consensus       578 ~~~C~~~ng~C~~--~C~~~~~~~~C~C~~g~~l~~d~~~C  616 (619)
T 3s94_A          578 SNPCAEENGGCSH--LCLYRPQGLRCACPIGFELISDMKTC  616 (619)
T ss_dssp             CCGGGSGGGGCSS--EEEEETTEEEEECCTTCEECSSTTCE
T ss_pred             cccCCCCCCChhH--hhccCCCCeEEECCCCCEECCCCCcC
Confidence            5677765556764  899999999999999997  466666

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=83.36  E-value=0.91  Score=41.49  Aligned_cols=41  Identities=41%  Similarity=0.818  Sum_probs=33.1

Q ss_pred             cCCCcCCCC-CCCCCCCeeecC-CCCeeEeCCCCcccCCCcee
Q psy5750         114 DINECNAGT-DLCHKNAMCFNE-IGSYSCQCRPGFTGNGHQCT  154 (286)
Q Consensus       114 ~~~~C~~~~-~~C~~~~~C~~~-~g~~~C~C~~G~~g~~~~C~  154 (286)
                      .++.|..+. ++|..++.|+.. .+.|.|.|+.||.|++..|.
T Consensus        17 ~~~~c~~~~~~~c~~~a~C~~~~~~~~~c~C~~G~ag~G~~c~   59 (551)
T 3fby_A           17 AQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG   59 (551)
T ss_dssp             BCCBCTTSSBCCCCTTEEEEECTTSCEEEEECTTEESSSSSCE
T ss_pred             ccccCCCCCCCCCCCCCeeEeCCCCCEecCCCCCCCCCCcccC
Confidence            345566554 799999999876 46789999999999888885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	2e-09
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	3e-06
d1gl4a1	233	d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse	3e-08
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	1e-07
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	2e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	6e-07
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	2e-06
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	3e-06
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	1e-05
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	2e-05
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	2e-05
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	5e-05
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-05
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	3e-05
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	7e-05
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	4e-05
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	1e-04
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	4e-05
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	0.001
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	1e-04
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	6e-04
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	2e-04
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	3e-04
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-04
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	0.004
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	9e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	0.001
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	0.001
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	0.002
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	0.003
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	0.004

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 118 CNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
           C      C  +A C +    + C+C   +TGNG QC 
Sbjct: 2   CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV 38

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 216 CMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
           C N    C+ +A+C +    + C+C   ++G+G  C
Sbjct: 2   CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQC 37

>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 233

class: Alpha and beta proteins (a+b)
fold: GFP-like
superfamily: GFP-like
family: Domain G2 of nidogen-1
domain: Domain G2 of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 1   GVFNYSAELIF-STGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQE 59
           G F   AE+ F     +L ++++F G D +  L +   ++G  P I  G S  +E   + 
Sbjct: 86  GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTEL 145

Query: 60  FTHSSTV 66
           + +SS+V
Sbjct: 146 YHYSSSV 152

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
             D++EC        K+  C N  GSY C+C  G+   G++C 
Sbjct: 2   AVDMDECKEPD--VCKHGQCINTDGSYRCECPFGYILAGNECV 42

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
             D+DEC       +    CIN  G+Y+C+C  G+   G  C 
Sbjct: 2   AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNECV 42

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
           D++EC+ G + C     C N +GS+ CQC  G+TG 
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 6e-07
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           DVDEC      C +   CIN  G+++CQC +G++G    CE
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP--RCE 40

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL 258
           TD+DEC   P +C     C+N PG ++C+C  G+          K C+
Sbjct: 1   TDIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMM---MKNCM 44

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 3e-06
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
           DI+EC    DLC     C N  G + C+C  G+    
Sbjct: 2   DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGF 37

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
           DI+EC     LC     C N  GS+ C+C  G+    +   C
Sbjct: 2   DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
           D+DEC   P +C     CIN  G++QC+C  G+  + D   C+
Sbjct: 2   DIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTRVCD 43

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
           DI+EC     LC    +C N  GSY C+C PG     N   C
Sbjct: 1   DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISAC 41

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
           D+DEC   P +C     C N  G+Y+C+C  G   S +   C
Sbjct: 1   DIDECQRDPLLCRG-GVCHNTEGSYRCECPPGHQLSPNISAC 41

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D D+C + P  C N   C +   +Y+C C  GF G   NCE
Sbjct: 2   DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           D ++C   ++ C     C ++I SY C C  GF G
Sbjct: 2   DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEG 34

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D D+C + P  C N   C ++  +Y C C   F G   NCE
Sbjct: 1   DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGR--NCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           D ++C   +  C     C +++ SY C C P F G
Sbjct: 1   DGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEG 33

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 114 DINECNAGTDLCHKNAM------CFNEIGSYSCQCRPGFT--GNGHQCT 154
           D++EC + +    ++        C N +G Y C CRPG+    + H C 
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 212 DVDECMNYPPICNNNAD------CINRPGTYQCQCKRGF--SGDGFNCE 252
           D+DEC +       +        C N  G Y C C+ G+    D  +C+
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
           DI+EC  G      + +C N  G++ C C P     G   T
Sbjct: 1   DIDECENG---GFCSGVCHNLPGTFECICGPDSALAGQIGT 38

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
           D+DEC N       +  C N PGT++C C    +  G   
Sbjct: 1   DIDECENG---GFCSGVCHNLPGTFECICGPDSALAGQIG 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)

Query: 213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           V+EC++ P  C N+A C+++ G +QC C  G+ G   +CE
Sbjct: 1   VNECVSNP--CQNDATCLDQIGEFQCICMPGYEGV--HCE 36

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           +NEC   ++ C  +A C ++IG + C C PG+ G
Sbjct: 1   VNECV--SNPCQNDATCLDQIGEFQCICMPGYEG 32

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCEE 253
           TDV+EC++     +   +C+N PG+Y C C   F  +     C +
Sbjct: 1   TDVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN--GHQCTE 155
           D+NEC   T        C N  GSY C C P F  N     C +
Sbjct: 2   DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           D+C   P  C N   C +  G Y C C  GF G   NCE
Sbjct: 1   DQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGK--NCE 35

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (73), Expect = 0.004
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
           ++C   T  C     C + +G Y+C C  GF G
Sbjct: 1   DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEG 31

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 9e-04
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
           DEC + P  C +N  C+++   +QC+C  GF+G    C+
Sbjct: 1   DECASSP--CLHNGRCLDKINEFQCECPTGFTGH--LCQ 35

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 115 INECNAGTDLCHK-NAMCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
           ++EC          +  C N +G Y C CR G+    N H C+ +
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 115 INECNAGTDLCHK-NAMCFNEIGSYSCQCRPGFT--GNGHQCTE 155
           I+EC          +  C N +G + C CR G+    N   C+E
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
             C N    C+ + +C+     Y C+C  GFSG    CE+
Sbjct: 2   AACTNTS--CSGHGECVETINNYTCKCDPGFSGL--KCEQ 37

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK 255
             C +    C+   +C+   G Y C C  GF G    CE  +
Sbjct: 2   ASCQDMS--CSKQGECLETIGNYTCSCYPGFYGP--ECEYVR 39

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
           I+EC    D    + +C N  G Y CQC  GF    +   C  +
Sbjct: 1   IDEC---QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1gl4a1	233	Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxI	99.19
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.12
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.92
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.92
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.9
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.88
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.84
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.78
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.78
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.78
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.74
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.72
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.64
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.63
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.62
d1nt0a3	45	Mannose-binding protein associated serine protease	98.56
d1szba2	45	Mannose-binding protein associated serine protease	98.52
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.52
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.51
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.47
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.46
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.39
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.39
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.36
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.34
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.33
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.29
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.25
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.24
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.22
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.21
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.19
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.17
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.11
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.08
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.03
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.92
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.79
d1szba2	45	Mannose-binding protein associated serine protease	97.74
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.72
d1nt0a3	45	Mannose-binding protein associated serine protease	97.7
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.65
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.47
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.45
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.38
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.37
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.34
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.28
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.27
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.22
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.04
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.97
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.53
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.2
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.14
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	96.06
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.96
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	95.45
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	95.3
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	95.16
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	95.11
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	94.88
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.55
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	94.35
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	94.27
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	93.17
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	91.44
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	89.78
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	89.08
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	88.8
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	88.28
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	81.26

>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: GFP-like
superfamily: GFP-like
family: Domain G2 of nidogen-1
domain: Domain G2 of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.3e-11  Score=98.82  Aligned_cols=63  Identities=27%  Similarity=0.446  Sum_probs=60.4

Q ss_pred             CccceEEEEEEC-CCCeEEEeEeeeccCccCCeeeeEEEeeccCCcccCCcceeecceeeeeec
Q psy5750           1 GVFNYSAELIFS-TGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQEFTHS   63 (286)
Q Consensus         1 g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~   63 (286)
                      |.|+|+++|+|. +++.|+|+|+|.|+|.++.|.+++.+.|.+|.+++++.+++.||.|.|+..
T Consensus        86 G~F~~~s~v~F~~~~~~l~i~q~~~GlD~~~~L~v~~~i~G~VP~i~~~a~v~i~dY~E~Y~~~  149 (233)
T d1gl4a1          86 GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTELYHYS  149 (233)
T ss_dssp             TEEEEEEEEEETTSSSCEEEEEEEECBCTTSCEECEEEEEEEECCCCTTCEEECCCEEEEEEEE
T ss_pred             eEEEEEEEEEEcCCCcEEEEEEEEEccCcCCeEEEEEEEEeEcCCCCCCCEEEeCCceEEEEeC
Confidence            789999999997 889999999999999999999999999999999999999999999999653

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.9e-11  Score=70.72  Aligned_cols=40  Identities=43%  Similarity=1.015  Sum_probs=36.3

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      +|||||...++.|.++++|+|+.++|+|.|++||+|.  +|+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~--~Ce   40 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP--RCE   40 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST--TSC
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCC--CCc
Confidence            4899999776789999999999999999999999988  884

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1e-11  Score=72.87  Aligned_cols=41  Identities=34%  Similarity=0.811  Sum_probs=35.2

Q ss_pred             cccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       210 C~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |.|||||...+  +..+++|+|++|+|.|.|++||++++.+|+
T Consensus         2 CvDidEC~~~~--~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~   42 (43)
T d1emoa1           2 AVDMDECKEPD--VCKHGQCINTDGSYRCECPFGYILAGNECV   42 (43)
T ss_dssp             CCCCCSSSSTT--SCSSSCCCCCSSCCCCCCCTTEEESSSCEE
T ss_pred             CcceeccCCcC--CCCCCEeECCCCCeEeECCCCcccCCCccc
Confidence            78999998765  334679999999999999999999888874

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.6e-11  Score=70.52  Aligned_cols=36  Identities=39%  Similarity=1.147  Sum_probs=32.6

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCC
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD  247 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gd  247 (286)
                      +|||||+..++.|. +++|+|++|+|.|.|++||+++
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            48999998888886 5799999999999999999986

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.1e-10  Score=68.00  Aligned_cols=39  Identities=36%  Similarity=0.883  Sum_probs=33.4

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      |||||...++.|. +++|+|++|+|+|.|++||+.  ++++|
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C   41 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISAC   41 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence            6899998888896 579999999999999999994  44444

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=5.2e-11  Score=68.28  Aligned_cols=33  Identities=24%  Similarity=0.759  Sum_probs=30.3

Q ss_pred             CCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCc
Q psy5750         219 YPPICNNNADCINRPGTYQCQCKRGFSGDGFNC  251 (286)
Q Consensus       219 ~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C  251 (286)
                      ..+.|+.++.|+|++|+|.|+|++||.|||+.|
T Consensus         5 ~~~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C   37 (40)
T d1gl4a2           5 NRHQCSVHAECRDYATGFCCRCVANYTGNGRQC   37 (40)
T ss_dssp             HGGGSCTTEEEEECSSCEEEEECTTEEECSSSE
T ss_pred             CCCCCCCCCEeecCCCCeEeECCCCCcCCCCEe
Confidence            346799999999999999999999999999988

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.9e-10  Score=63.99  Aligned_cols=37  Identities=43%  Similarity=1.031  Sum_probs=34.1

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |+|+|.++|  |.++++|++..++|+|.|++||.|+  .||
T Consensus         2 d~d~C~~~P--C~ngg~C~~~~~~y~C~C~~g~~G~--~Ce   38 (39)
T d1edmb_           2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE   38 (39)
T ss_dssp             CCCTTTTCC--CCTTCEEEEETTEEEEECCTTCCST--TSC
T ss_pred             ccccCCCCC--CCCCcEEEcCCCCEEEECCCCCCCC--CCC
Confidence            789999876  9999999999999999999999998  874

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.4e-10  Score=67.95  Aligned_cols=40  Identities=40%  Similarity=0.997  Sum_probs=33.9

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      +|||||+..++.|. +++|+|++|+|.|.|++||+.  ++++|
T Consensus         1 qDinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~C   42 (43)
T d1uzka2           1 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTRVC   42 (43)
T ss_dssp             EECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred             CCcccccCCCCCcC-CCEEECCCCCeEeECCCCCeECcCCCcc
Confidence            48999998888886 469999999999999999985  45555

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=3.7e-10  Score=63.70  Aligned_cols=37  Identities=41%  Similarity=0.991  Sum_probs=33.8

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |+|+|...|  |.++++|++..++|.|+|++||+|.  .||
T Consensus         1 D~d~C~~~P--C~ngg~C~~~~~~y~C~C~~g~~G~--~Ce   37 (37)
T d2c4fl1           1 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGR--NCE   37 (37)
T ss_dssp             TCCGGGGCC--CCTTCEEEEETTEEEEECCTTEEST--TSC
T ss_pred             CcccCCCCC--CCCCCEEECCCCCeEEECCCCCcCC--CCC
Confidence            689999876  9999999999999999999999998  774

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=5.4e-10  Score=68.80  Aligned_cols=42  Identities=31%  Similarity=0.745  Sum_probs=34.3

Q ss_pred             ccCCCcCCCCCCCCCC------CeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         211 TDVDECMNYPPICNNN------ADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~------~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      .|||||...++.|...      ..|+|++|+|.|.|++||+  +|+++|+
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            4899998877666433      4799999999999999998  6777773

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.4e-09  Score=61.91  Aligned_cols=37  Identities=43%  Similarity=1.156  Sum_probs=33.6

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCC
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      ||+|...|  |.++++|++..++|.|.|++||.|.  .||.
T Consensus         1 Id~C~~~P--C~n~g~C~~~~~~y~C~C~~G~~G~--~Ce~   37 (39)
T d2vj3a2           1 VNECVSNP--CQNDATCLDQIGEFQCICMPGYEGV--HCEV   37 (39)
T ss_dssp             CCTTTTCC--CCSSCEEEECSSCEEEECCTTEESS--SSCE
T ss_pred             CcCCcCCC--CCCCCEEECCCCCEEEeCCCCCccC--cCee
Confidence            68998876  9999999999999999999999998  8853

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.4e-09  Score=61.04  Aligned_cols=37  Identities=27%  Similarity=0.592  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ++|+|.++||.++++|++..++|+|.|++||.|..|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            6899999999999999999999999999999988765

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=1.4e-09  Score=61.22  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      |+|+|.++||.++++|++..++|+|.|++||.|..|+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            5789999999999999999999999999999987664

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.1e-09  Score=61.84  Aligned_cols=40  Identities=40%  Similarity=1.079  Sum_probs=35.9

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCcee
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT  154 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~  154 (286)
                      +|||+|....++|.++++|++..++|+|.|++||+|  ..|+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G--~~Ce   40 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG--PRCE   40 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEES--TTSC
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcC--CCCc
Confidence            378999876799999999999999999999999999  6765

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.7e-09  Score=62.29  Aligned_cols=43  Identities=33%  Similarity=0.792  Sum_probs=35.6

Q ss_pred             CCccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccCCCceec
Q psy5750         111 GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTE  155 (286)
Q Consensus       111 ~C~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~  155 (286)
                      +|+|||||...  .+..++.|+|+.|+|.|.|++||++++..|.+
T Consensus         1 sCvDidEC~~~--~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~D   43 (43)
T d1emoa1           1 SAVDMDECKEP--DVCKHGQCINTDGSYRCECPFGYILAGNECVD   43 (43)
T ss_dssp             CCCCCCSSSST--TSCSSSCCCCCSSCCCCCCCTTEEESSSCEEE
T ss_pred             CCcceeccCCc--CCCCCCEeECCCCCeEeECCCCcccCCCcccC
Confidence            47899999873  34456799999999999999999987777753

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.1e-09  Score=59.98  Aligned_cols=36  Identities=22%  Similarity=0.588  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      +|+|.++||.++++|++..++|+|.|++||.|..|+
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCe
Confidence            589999999999999999999999999999998876

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5.6e-09  Score=57.97  Aligned_cols=35  Identities=40%  Similarity=1.144  Sum_probs=31.4

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |+|.+.|  |.++++|++..++|+|.|++||.|.  .||
T Consensus         1 d~C~~~P--C~ngg~C~~~~~~y~C~C~~g~~G~--~CE   35 (35)
T d2vj3a3           1 DECASSP--CLHNGRCLDKINEFQCECPTGFTGH--LCQ   35 (35)
T ss_dssp             CTTTTCC--STTTCEEEECSSCEEEECCTTEESS--SSC
T ss_pred             CCCCCCC--CCCCcEEECCCCCeEEECCCCCCCC--CcC
Confidence            6788765  9999999999999999999999998  774

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.1e-09  Score=62.18  Aligned_cols=39  Identities=36%  Similarity=0.918  Sum_probs=31.1

Q ss_pred             ccCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCc
Q psy5750         211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       211 ~d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      +|||||+..++.|  ++.|+|++|+|.|.|++||+.  +++.|
T Consensus         1 TDidEC~~~~~~c--~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C   41 (43)
T d1uzka1           1 TDVNECLDPTTCI--SGNCVNTPGSYICDCPPDFELNPTRVGC   41 (43)
T ss_dssp             CCCCGGGSTTSSB--TSEEEEETTEEEEECCTTCEECTTSSBE
T ss_pred             CCccccCCCCcCc--CCEeECCCCCEEEecCCCCEECCCCCcc
Confidence            4899998765433  579999999999999999985  44555

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.2e-08  Score=56.55  Aligned_cols=35  Identities=26%  Similarity=0.631  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      |+|.++||.++++|++..++|+|.|++||.|..|+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            67999999999999999999999999999987664

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1e-08  Score=58.28  Aligned_cols=35  Identities=46%  Similarity=1.175  Sum_probs=31.8

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      |+|...|  |.++++|++..++|.|.|++||.|.  .||
T Consensus         1 D~C~~~P--C~ngg~C~~~~~~y~C~C~~G~~G~--~Ce   35 (39)
T d1xkba1           1 DQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGK--NCE   35 (39)
T ss_dssp             CTTTTCC--CCSSCEECCCSSSCCEECCTTEETT--TTC
T ss_pred             CcCCCCC--CCCCcEEECCCCCEEEECCCCCCcC--cCe
Confidence            6788765  9999999999999999999999998  885

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.3e-08  Score=57.81  Aligned_cols=35  Identities=29%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      |+|.++||.++++|++..++|.|.|++||.|..|+
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTC
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCe
Confidence            67999999999999999999999999999998876

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.1e-08  Score=60.35  Aligned_cols=40  Identities=30%  Similarity=0.625  Sum_probs=28.0

Q ss_pred             CCCcCCCCCC-CCCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         213 VDECMNYPPI-CNNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       213 ~deC~~~~~~-C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      ||||+..++. +.-.+.|+|++|+|+|.|++||+  .|+++|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccc
Confidence            6888765433 22256999999999999999997  5777773

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.4e-08  Score=58.80  Aligned_cols=40  Identities=28%  Similarity=0.727  Sum_probs=31.3

Q ss_pred             CCCcCCCCCCC-CCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         213 VDECMNYPPIC-NNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       213 ~deC~~~~~~C-~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      ||||+..+..+ .-.+.|+|++|+|.|.|++||+  .|+++|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~   43 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS   43 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCcc
Confidence            68888765433 2356999999999999999998  5777774

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.2e-09  Score=58.66  Aligned_cols=34  Identities=41%  Similarity=0.892  Sum_probs=29.1

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDG  248 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg  248 (286)
                      |||||+. ++.|.  ..|+|++|+|+|.|++||+..+
T Consensus         1 DidEC~~-~~~C~--~~C~N~~Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           1 DIDECEN-GGFCS--GVCHNLPGTFECICGPDSALAG   34 (40)
T ss_dssp             ECCHHHH-CSSCS--SEEEECSSSEEEEECSSSSCEE
T ss_pred             CccccCC-CcCcc--CEeeCCCCCeEeECCCCCeeCC
Confidence            6899976 46786  4999999999999999999754

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.6e-08  Score=57.38  Aligned_cols=37  Identities=41%  Similarity=1.061  Sum_probs=30.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcC
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFS--GDGFNCE  252 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~  252 (286)
                      ||||+. ++.|.+  .|+|++|+|.|.|++||+  .|+++|+
T Consensus         1 idEC~~-~~~C~~--~C~n~~Gsy~C~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2           1 IDECQD-PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK   39 (41)
T ss_dssp             CCTTTT-TTSCSS--CEECSSSCCEECCCTTEEECTTTCCEE
T ss_pred             CccCCC-CCCCCC--EeECCCCCEEeECCCCCeECCCCCccc
Confidence            688975 467854  899999999999999999  4677774

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.3e-08  Score=57.89  Aligned_cols=36  Identities=36%  Similarity=1.032  Sum_probs=31.6

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCC
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE  253 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~  253 (286)
                      +.|...|  |.++|+|++..++|.|.|++||.|.  .||+
T Consensus         2 ~~C~~~p--C~ngg~C~~~~~~~~C~C~~g~~G~--~Ce~   37 (39)
T d1g1ta2           2 AACTNTS--CSGHGECVETINNYTCKCDPGFSGL--KCEQ   37 (39)
T ss_dssp             CCCCTTG--GGGSEEEEEETTEEEEEECTTEEST--TSCE
T ss_pred             CcccCCc--CCCCcEEECCCCCEEEeCCCCCcCc--CcCc
Confidence            4577655  9999999999999999999999998  8864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.2e-08  Score=57.32  Aligned_cols=37  Identities=32%  Similarity=0.945  Sum_probs=31.9

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      +.|...|  |.++|+|++..++|+|.|++||.|.  .||..
T Consensus         2 ~~C~~~p--C~ngg~C~~~~~~y~C~C~~g~~G~--~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMS--CSKQGECLETIGNYTCSCYPGFYGP--ECEYV   38 (40)
T ss_dssp             CCCCTTG--GGGSEEEEECSSSEEEEECTTEEST--TSCEE
T ss_pred             CcccCCc--CCCCcEEECCCCCeEEeCCCCccCC--CCCCC
Confidence            4566655  9999999999999999999999998  88654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.2e-08  Score=55.65  Aligned_cols=36  Identities=36%  Similarity=0.959  Sum_probs=31.5

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcccC
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN  149 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g~  149 (286)
                      .|||||......|. ++.|+|+.|+|+|.|++||.++
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            47999998777886 5799999999999999999874

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.1e-08  Score=57.16  Aligned_cols=34  Identities=32%  Similarity=0.822  Sum_probs=31.0

Q ss_pred             CCCCCCCCeeecCCCCeeEeCCCCcccCCCceec
Q psy5750         122 TDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTE  155 (286)
Q Consensus       122 ~~~C~~~~~C~~~~g~~~C~C~~G~~g~~~~C~~  155 (286)
                      .+.|..++.|+|++++|.|.|++||.|+|..|.+
T Consensus         6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C~~   39 (40)
T d1gl4a2           6 RHQCSVHAECRDYATGFCCRCVANYTGNGRQCVA   39 (40)
T ss_dssp             GGGSCTTEEEEECSSCEEEEECTTEEECSSSEEE
T ss_pred             CCCCCCCCEeecCCCCeEeECCCCCcCCCCEeeC
Confidence            3778899999999999999999999999998864

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.4e-08  Score=56.11  Aligned_cols=35  Identities=31%  Similarity=0.714  Sum_probs=32.7

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ++|.++||.++++|++..++|+|.|++||.|..|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcC
Confidence            57889999999999999999999999999998876

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.9e-08  Score=54.82  Aligned_cols=37  Identities=27%  Similarity=0.665  Sum_probs=31.4

Q ss_pred             CCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC-CCCCc
Q psy5750         213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSG-DGFNC  251 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g-dg~~C  251 (286)
                      +|||+..++.|.+  .|+|++++|.|.|++||+- |+++|
T Consensus         2 ~neC~~~nggC~h--~C~n~~g~~~C~C~~Gy~L~d~~tC   39 (40)
T d3bpse1           2 TNECLDNNGGCSH--VCNDLKIGYECLCPDGFQLVAQRRC   39 (40)
T ss_dssp             SCGGGTGGGGCSS--EEEECSSSEEEECCTTCCEETTTEE
T ss_pred             cccCCCCCCCCcC--EEEcCCCCEEEECCCCCEECCCCcC
Confidence            5889888788975  9999999999999999983 55666

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.4e-08  Score=55.00  Aligned_cols=35  Identities=26%  Similarity=0.599  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      +.|.++||.++++|++.+++|.|.|++||.|..|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            56888999999999999999999999999998776

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.9e-08  Score=56.56  Aligned_cols=38  Identities=26%  Similarity=0.846  Sum_probs=32.8

Q ss_pred             cCCCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ..++|...|  |.+ ++|++..++|+|.|++||.|.  .|+..
T Consensus         7 ~~~~C~~~P--C~n-G~C~~~~~~y~C~C~~G~~G~--~Ce~~   44 (48)
T d1autl1           7 LEHPCASLC--CGH-GTCIDGIGSFSCDCRSGWEGR--FCQRE   44 (48)
T ss_dssp             SCCSSSSTT--TTS-EEECCCSSCCCEEECTTEEST--TSCEE
T ss_pred             CCCcccCCC--CCC-CEEECCCCCCeEeCCCCCcCC--Ccccc
Confidence            467898866  986 799999999999999999988  88654

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.5e-07  Score=54.81  Aligned_cols=36  Identities=22%  Similarity=0.658  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~  103 (286)
                      ..++|.++||.+ ++|++.+++|.|.|++||.|..|+
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce   42 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcc
Confidence            578999999986 899999999999999999999887

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.3e-07  Score=51.67  Aligned_cols=33  Identities=24%  Similarity=0.532  Sum_probs=29.3

Q ss_pred             CCCCCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          71 CKNFFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        71 C~~~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      |.++||.++++|+..  .++|+|.|++||.|..|+
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcC
Confidence            567899999999976  467999999999999887

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.24  E-value=2.6e-07  Score=53.24  Aligned_cols=37  Identities=43%  Similarity=1.092  Sum_probs=31.6

Q ss_pred             CCCcCCCCCCCCCCCeeeeC-CCCeeeecCC-CCcCCCCCcCC
Q psy5750         213 VDECMNYPPICNNNADCINR-PGTYQCQCKR-GFSGDGFNCEE  253 (286)
Q Consensus       213 ~deC~~~~~~C~~~~~C~n~-~g~y~C~C~~-Gy~gdg~~C~~  253 (286)
                      ||+|..+|  |.++|+|++. .++|+|.|+. ||.|.  .||.
T Consensus         2 id~C~~nP--C~ngG~C~~~~~~~y~C~C~~~G~~G~--~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYP--CQHQGICVRFGLDRYQCDCTRTGYSGP--NCTI   40 (42)
T ss_dssp             CCGGGGCC--CCTTCEEEEETTTEEEEECTTSSEETT--TTCE
T ss_pred             CccCcCCC--CCCCCEeeeCCCCCEEEECCCCCcCCc--CcCc
Confidence            68898876  9999999875 6899999986 99998  8853

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-07  Score=54.41  Aligned_cols=34  Identities=44%  Similarity=1.011  Sum_probs=29.6

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      |||||......|. ++.|+|+.|+|+|.|++||..
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeE
Confidence            5889987677785 579999999999999999984

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-07  Score=52.20  Aligned_cols=36  Identities=33%  Similarity=0.758  Sum_probs=28.7

Q ss_pred             CCcCCC-CCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCc
Q psy5750         214 DECMNY-PPICNNNADCINRPGTYQCQCKRGFS--GDGFNC  251 (286)
Q Consensus       214 deC~~~-~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C  251 (286)
                      |||+.. .+.|.+  .|+|++|+|+|.|++||+  .|+++|
T Consensus         1 dEC~~~~~~~C~~--~C~n~~Gsy~C~C~~Gy~L~~d~~tC   39 (42)
T d1nzia2           1 NECTDFVDVPCSH--FCNNFIGGYFCSCPPEYFLHDDMKNC   39 (42)
T ss_dssp             CTTTC-CCCCSSS--EEEEETTEEEEECCTTCEECTTSSCE
T ss_pred             CCCCCCCCcCCCC--EeecCCCCEEEeCCCCCEECCCCCee
Confidence            578643 356864  899999999999999998  577777

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.21  E-value=3e-07  Score=53.00  Aligned_cols=36  Identities=25%  Similarity=0.599  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCCeeeeC-CCCCeEecCC-Cccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVE-DDKPTCICNR-GFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~-~g~~~C~C~~-g~~~~~c~  103 (286)
                      +|+|.++||+++++|++. .++|+|.|.. ||.|..|+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            688999999999999975 7899999986 89988776

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=8.3e-07  Score=54.06  Aligned_cols=42  Identities=33%  Similarity=0.949  Sum_probs=32.3

Q ss_pred             ccCCCcCCCCCCCCC------CCeeecCCCCeeEeCCCCcc--cCCCcee
Q psy5750         113 FDINECNAGTDLCHK------NAMCFNEIGSYSCQCRPGFT--GNGHQCT  154 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~------~~~C~~~~g~~~C~C~~G~~--g~~~~C~  154 (286)
                      +|||||......|..      ...|+|++|+|+|.|++||+  .++.+|+
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            578999876555532      24799999999999999998  4556665

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-06  Score=50.34  Aligned_cols=32  Identities=34%  Similarity=0.848  Sum_probs=27.3

Q ss_pred             CCCCCCeeeeC--CCCeeeecCCCCcCCCCCcCCCC
Q psy5750         222 ICNNNADCINR--PGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       222 ~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      .|.++|+|++.  .++|.|+|++||.|.  .||...
T Consensus         5 PC~ngG~C~~~~~~~~y~C~C~~g~~G~--~Ce~~~   38 (41)
T d1tpga1           5 RCFNGGTCQQALYFSDFVCQCPEGFAGK--SCEIDT   38 (41)
T ss_dssp             CSCTTCEEEEESSSSCEEEECCTTCBSS--SCCBCS
T ss_pred             CCCCCCEEecCCCCCCeEECCCCCCCCC--CcCcCc
Confidence            49999999875  468999999999998  997654

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6e-07  Score=52.11  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCCCCeeeeCCCCCeEecCCCcccc
Q psy5750          67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQL  100 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~~g~~~C~C~~g~~~~  100 (286)
                      ++|||+.....-++.|+|+.|+|+|.|++||.+.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~   35 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELN   35 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEEC
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEEC
Confidence            7899987332236899999999999999999865

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-07  Score=53.84  Aligned_cols=35  Identities=37%  Similarity=0.906  Sum_probs=29.7

Q ss_pred             ccCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       113 ~~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      +|||||....+.|. ++.|+|++|+|+|.|++||..
T Consensus         1 qDinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l   35 (43)
T d1uzka2           1 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYL   35 (43)
T ss_dssp             EECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCB
T ss_pred             CCcccccCCCCCcC-CCEEECCCCCeEeECCCCCeE
Confidence            37899987667775 469999999999999999984

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=8.6e-07  Score=50.71  Aligned_cols=35  Identities=26%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCCeeeeC-CCCCeEecC-CCccccccc
Q psy5750          69 DPCKNFFCVANSSCIVE-DDKPTCICN-RGFQQLYSE  103 (286)
Q Consensus        69 ~~C~~~~C~~~~~C~~~-~g~~~C~C~-~g~~~~~c~  103 (286)
                      |+|.++||+++++|++. .++|+|.|+ +||.|..|+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            78999999999999975 788999996 699988776

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1e-06  Score=50.35  Aligned_cols=36  Identities=36%  Similarity=1.101  Sum_probs=30.2

Q ss_pred             CCcCCCCCCCCCCCeeeeC-CCCeeeecC-CCCcCCCCCcCC
Q psy5750         214 DECMNYPPICNNNADCINR-PGTYQCQCK-RGFSGDGFNCEE  253 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~-~g~y~C~C~-~Gy~gdg~~C~~  253 (286)
                      |+|..+|  |.++++|++. .++|+|.|+ +||.|.  .||.
T Consensus         2 d~C~~~P--C~ngG~C~~~~~~~y~C~C~~~gy~G~--~Ce~   39 (41)
T d1cvua2           2 NPCCSNP--CQNRGECMSTGFDQYKCDCTRTGFYGE--NCTT   39 (41)
T ss_dssp             CTTTTCC--CCTTCEEEEEETTEEEEECTTSSEETT--TTCE
T ss_pred             CcCcCCC--CCCCCEEEECCCCCEEEeCcCCCcCCc--CcCc
Confidence            6788765  9999999875 688999997 699998  8853

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.8e-06  Score=49.37  Aligned_cols=39  Identities=26%  Similarity=0.543  Sum_probs=30.3

Q ss_pred             CCCCCC-CCCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCcc
Q psy5750          68 DDPCKN-FFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFD  114 (286)
Q Consensus        68 ~~~C~~-~~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~  114 (286)
                      +|+|+. ++|..  .|+|+.|+|+|.|++||.+.  .    ++++|.+
T Consensus         1 idEC~~~~~C~~--~C~n~~Gsy~C~C~~Gy~L~--~----d~~~C~a   40 (41)
T d1i0ua2           1 IDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLD--P----HTKACKA   40 (41)
T ss_dssp             CCTTTTTTSCSS--CEECSSSCCEECCCTTEEEC--T----TTCCEEE
T ss_pred             CccCCCCCCCCC--EeECCCCCEEeECCCCCeEC--C----CCCcccc
Confidence            477866 67854  99999999999999999865  3    4556654

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.5e-06  Score=54.91  Aligned_cols=42  Identities=31%  Similarity=0.754  Sum_probs=33.8

Q ss_pred             cCCCcCCCCCCCCCCCeee-----eCCCCeeeecCCCCcCCCCCcCCCCee
Q psy5750         212 DVDECMNYPPICNNNADCI-----NRPGTYQCQCKRGFSGDGFNCEEGKYC  257 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~-----n~~g~y~C~C~~Gy~gdg~~C~~~~~c  257 (286)
                      +.++|...+  |.++|+|.     +..++|.|.|++||.|.  .||.....
T Consensus         5 ~c~ec~~~~--C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~--~Ce~~~~~   51 (63)
T d1haea_           5 KCAEKEKTF--CVNGGECFMVKDLSNPSRYLCKCQPGFTGA--RCTENVPM   51 (63)
T ss_dssp             ECCHHHHTT--SCTTCEEEEEESSSSSCCEEEECCTTEEST--TSCEECCS
T ss_pred             cCCCCcCCc--CCCCCEEeecccccCCCCEEeECCCCCCCC--CcCCCCCc
Confidence            557787765  99999995     45689999999999999  99765433

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.5e-06  Score=49.10  Aligned_cols=32  Identities=34%  Similarity=0.889  Sum_probs=27.5

Q ss_pred             cCCCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       114 ~~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      |||||.. .++|.  ..|+|+.|+|+|.|++||..
T Consensus         1 DidEC~~-~~~C~--~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECEN-GGFCS--GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             ECCHHHH-CSSCS--SEEEECSSSEEEEECSSSSC
T ss_pred             CccccCC-CcCcc--CEeeCCCCCeEeECCCCCee
Confidence            5788875 37886  49999999999999999985

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.6e-05  Score=46.34  Aligned_cols=41  Identities=32%  Similarity=0.852  Sum_probs=29.8

Q ss_pred             CCCcCCCCCCC-CCCCeeecCCCCeeEeCCCCcc--cCCCceec
Q psy5750         115 INECNAGTDLC-HKNAMCFNEIGSYSCQCRPGFT--GNGHQCTE  155 (286)
Q Consensus       115 ~~~C~~~~~~C-~~~~~C~~~~g~~~C~C~~G~~--g~~~~C~~  155 (286)
                      ||||......+ .-...|+|+.|+|+|.|++||.  .++..|.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            57787643221 2245999999999999999998  45566764

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=2.1e-05  Score=47.42  Aligned_cols=38  Identities=29%  Similarity=0.744  Sum_probs=29.6

Q ss_pred             CCcCCCCCCCCCCCeeeeC--CCCeeeecCCCCcCCCCCcCCCC
Q psy5750         214 DECMNYPPICNNNADCINR--PGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      ++|..+  .|.++|+|++.  ..+|+|.|++||.|.  .||..+
T Consensus         7 ~~c~~~--~C~NgG~C~~~~~~~~~~C~C~~gy~G~--~Ce~~~   46 (53)
T d3egfa_           7 PSSYDG--YCLNGGVCMHIESLDSYTCNCVIGYSGD--RCQTRD   46 (53)
T ss_dssp             CTTSSC--CSCSSCEEEEESSSSCEEEECCTTCCSS--SSCCCS
T ss_pred             CCCCCC--CCCCCcEeeccCCCCCeEeECCCCCcCC--CCccCC
Confidence            345554  49999999754  468999999999999  997653

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=1e-05  Score=47.15  Aligned_cols=41  Identities=17%  Similarity=0.335  Sum_probs=27.6

Q ss_pred             CCCCCCC---CCCCCCeeeeCCCCCeEecCCCcccccccccCCCCCCCcc
Q psy5750          68 DDPCKNF---FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFD  114 (286)
Q Consensus        68 ~~~C~~~---~C~~~~~C~~~~g~~~C~C~~g~~~~~c~~~~~~~~~C~~  114 (286)
                      +|+|+..   .+.-...|+|+.++|+|.|++||+..  .    ++++|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~--~----d~~tC~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILH--Q----NKHTCSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEEC--T----TSSCEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEEC--C----CCCcccc
Confidence            4677652   12224599999999999999999865  3    4555543

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=7.3e-06  Score=51.61  Aligned_cols=37  Identities=22%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCCCeee-----eCCCCCeEecCCCccccccc
Q psy5750          67 NDDPCKNFFCVANSSCI-----VEDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~-----~~~g~~~C~C~~g~~~~~c~  103 (286)
                      +.++|..+||.++|+|.     +..++|.|.|++||.|..|+
T Consensus         5 ~c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce   46 (63)
T d1haea_           5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT   46 (63)
T ss_dssp             ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred             cCCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcC
Confidence            35677779999999995     44678999999999999887

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.7e-05  Score=40.52  Aligned_cols=36  Identities=36%  Similarity=0.851  Sum_probs=28.1

Q ss_pred             CCcCCCCCCCCCCCeeeeCCCCeeeecCCCCcC-CCCCc
Q psy5750         214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSG-DGFNC  251 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g-dg~~C  251 (286)
                      |||+.. +.|.+ ++|.|..|+|.|.|.+||.. .-.+|
T Consensus         2 dECsig-npCGn-GTCtNviGgFec~C~~GFepgpmm~C   38 (39)
T d1emoa2           2 DECSVG-NPCGN-GTCKNVIGGFECTCEEGFEPGPMMTC   38 (39)
T ss_dssp             CGGGTT-CSSSS-SCEEECSSSEEECCSSSSCCCSSSCC
T ss_pred             CccccC-CccCC-ceeeecccceEEeecCCcCCCcceec
Confidence            677765 56875 69999999999999999983 33344

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.5e-05  Score=46.06  Aligned_cols=37  Identities=22%  Similarity=0.604  Sum_probs=28.7

Q ss_pred             CCcCCCCCCCCCCCeeeeC--CCCeeeecCCCCcCCCCCcCCC
Q psy5750         214 DECMNYPPICNNNADCINR--PGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~n~--~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ++|..+  .|.++|+|++.  ..+|+|.|++||+|.  +||..
T Consensus         5 ~~c~~~--~C~ngG~C~~~~~~~~~~C~C~~gy~G~--~Ce~~   43 (48)
T d1nqlb_           5 PLSHDG--YCLHDGVCMYIEALDKYACNCVVGYIGE--RCQYR   43 (48)
T ss_dssp             CSTTCC--EECTTCEEEEETTTTEEEEEECTTEEST--TSCEE
T ss_pred             CCCCCC--CCCCCcEEeeeCCCCCeEEeCCCCcccC--CCCcC
Confidence            345444  49999999764  468999999999988  89654

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4e-05  Score=43.19  Aligned_cols=31  Identities=32%  Similarity=0.732  Sum_probs=26.9

Q ss_pred             CCCcCCCCCCCCCCCeeecCCCCeeEeCCCCcc
Q psy5750         115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT  147 (286)
Q Consensus       115 ~~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~  147 (286)
                      +|||......|..  .|++++++|+|.|++||.
T Consensus         2 ~neC~~~nggC~h--~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           2 TNECLDNNGGCSH--VCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             SCGGGTGGGGCSS--EEEECSSSEEEECCTTCC
T ss_pred             cccCCCCCCCCcC--EEEcCCCCEEEECCCCCE
Confidence            5788776677865  999999999999999997

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=9.4e-05  Score=44.46  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      ..+|..++|.++|+|+..  ...|+|.|++||.|..|+
T Consensus         6 C~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce   43 (53)
T d3egfa_           6 CPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             CCTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CCCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCc
Confidence            356777899999999854  468999999999998877

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=8.8e-05  Score=42.19  Aligned_cols=37  Identities=35%  Similarity=0.802  Sum_probs=28.0

Q ss_pred             CCcCCC-CCCCCCCCeeecCCCCeeEeCCCCcc--cCCCcee
Q psy5750         116 NECNAG-TDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCT  154 (286)
Q Consensus       116 ~~C~~~-~~~C~~~~~C~~~~g~~~C~C~~G~~--g~~~~C~  154 (286)
                      |||... ...|..  .|++++|+|+|.|++||.  .++.+|.
T Consensus         1 dEC~~~~~~~C~~--~C~n~~Gsy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCSH--FCNNFIGGYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSSS--EEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCCcCCCC--EeecCCCCEEEeCCCCCEECCCCCeec
Confidence            467532 367865  899999999999999998  4556664

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=4.1e-05  Score=45.47  Aligned_cols=36  Identities=22%  Similarity=0.528  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCcCCC
Q psy5750         217 MNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNCEEG  254 (286)
Q Consensus       217 ~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C~~~  254 (286)
                      +...+.|.+  .|+|++++|+|.|++||+-  |+++|+..
T Consensus         3 ~~~NGgC~~--~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~   40 (50)
T d1autl2           3 SLDNGGCTH--YCLEEVGWRRCSCAPGYKLGDDLLQCHPA   40 (50)
T ss_dssp             SSGGGGCSS--EEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred             CCCCCCccc--EeecCCCCeEEECCCCCEECCCCCccccC
Confidence            333345654  8999999999999999984  77788543

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=3.4e-05  Score=46.07  Aligned_cols=39  Identities=18%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             CCCCCCCCCCCeeeeCCCCeeeecCCCCcC--CCCCcCCCCee
Q psy5750         217 MNYPPICNNNADCINRPGTYQCQCKRGFSG--DGFNCEEGKYC  257 (286)
Q Consensus       217 ~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g--dg~~C~~~~~c  257 (286)
                      +.+.+.|.+  .|+|++++|+|.|++||+.  |+++|+..+.+
T Consensus         2 ~~~NGgC~h--~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           2 SLDNGGCDQ--FCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CTTTTSSSS--CCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCccc--EeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            334455754  7999999999999999984  67777555444

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=3.2e-05  Score=46.13  Aligned_cols=38  Identities=24%  Similarity=0.612  Sum_probs=28.2

Q ss_pred             cCCCCCCCCCCCeeeeCCCCeeeecCCCCc--CCCCCcCCCC
Q psy5750         216 CMNYPPICNNNADCINRPGTYQCQCKRGFS--GDGFNCEEGK  255 (286)
Q Consensus       216 C~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~--gdg~~C~~~~  255 (286)
                      |+...+.|.+  .|+|++++|+|.|++||+  .|+++|+...
T Consensus         3 C~~~NGgC~h--~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~   42 (51)
T d2p3ua1           3 CSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNGKACIPTG   42 (51)
T ss_dssp             GGTGGGGCSS--EEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             cCCCCCCccc--EeecCCCCeEeEcCCCCEECCCCCccccCC
Confidence            3333445754  899999999999999998  4777775433

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=5.6e-05  Score=44.48  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          68 DDPCKNFFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        68 ~~~C~~~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      ..+|..++|.++|+|+..  ...|+|.|+.||+|..|+
T Consensus         4 C~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           4 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             CCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            356777899999999864  567999999999988776

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00029  Score=37.41  Aligned_cols=31  Identities=39%  Similarity=1.040  Sum_probs=26.7

Q ss_pred             CCcCCCCCCCCCCCeeecCCCCeeEeCCCCccc
Q psy5750         116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG  148 (286)
Q Consensus       116 ~~C~~~~~~C~~~~~C~~~~g~~~C~C~~G~~g  148 (286)
                      |+|+.+ ++|.+ ++|.|..|+|.|.|..||..
T Consensus         2 dECsig-npCGn-GTCtNviGgFec~C~~GFep   32 (39)
T d1emoa2           2 DECSVG-NPCGN-GTCKNVIGGFECTCEEGFEP   32 (39)
T ss_dssp             CGGGTT-CSSSS-SCEEECSSSEEECCSSSSCC
T ss_pred             CccccC-CccCC-ceeeecccceEEeecCCcCC
Confidence            577765 89976 79999999999999999973

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.04  E-value=0.00011  Score=43.69  Aligned_cols=41  Identities=20%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCcC
Q psy5750         169 SDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECM  217 (286)
Q Consensus       169 ~~~~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC~  217 (286)
                      ..+..|   ...|+++.++|+|.|++||++..     ++..|.++++|.
T Consensus         3 ~~NGgC---~h~C~~~~~~~~C~C~~Gy~L~~-----D~~tC~~~~~~p   43 (51)
T d1kigl_           3 LDNGGC---DQFCREERSEVRCSCAHGYVLGD-----DSKSCVSTERFP   43 (51)
T ss_dssp             TTTTSS---SSCCCEETTEECCCCCTTEEECT-----TSSCEEECSSSC
T ss_pred             CCCCCc---ccEeEcCCCcEEeEcCCCCEECC-----CCCccccCCccC
Confidence            334567   46799999999999999998873     355898888873

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00023  Score=42.04  Aligned_cols=36  Identities=19%  Similarity=0.454  Sum_probs=26.4

Q ss_pred             CCcCCCCCCCCCCCeee------eCCCCeeeecCCCCcC--CCCCc
Q psy5750         214 DECMNYPPICNNNADCI------NRPGTYQCQCKRGFSG--DGFNC  251 (286)
Q Consensus       214 deC~~~~~~C~~~~~C~------n~~g~y~C~C~~Gy~g--dg~~C  251 (286)
                      +||....+.|.+  .|+      +..++|+|.|+.||+-  |+++|
T Consensus         5 neC~~~NGGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tC   48 (50)
T d1ijqa2           5 ERTTLSNGGCQY--LCLPAPQINPHSPKFTCACPDGMLLARDMRSC   48 (50)
T ss_dssp             SSSSSGGGGCSS--EEEECCCCSTTCCSEEEECCTTCEECTTSSCE
T ss_pred             cccCCCCCCCcC--ccCCCcCcccCCCCEEEeCCCCCEECCCCCcc
Confidence            567666566765  786      4457999999999984  55665

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00044  Score=40.84  Aligned_cols=37  Identities=24%  Similarity=0.653  Sum_probs=28.6

Q ss_pred             CCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCc
Q psy5750         172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDEC  216 (286)
Q Consensus       172 ~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC  216 (286)
                      ..|   ...|++++++|+|.|+.||++..     +++.|+.+++.
T Consensus         7 GgC---~~~C~~~~g~~~C~C~~Gy~L~~-----D~~tC~~~~~~   43 (50)
T d1autl2           7 GGC---THYCLEEVGWRRCSCAPGYKLGD-----DLLQCHPAVKF   43 (50)
T ss_dssp             GGC---SSEEEECSSSEEEECCTTEEECT-----TSSCEEECSSS
T ss_pred             CCc---ccEeecCCCCeEEECCCCCEECC-----CCCccccCCCC
Confidence            456   46899999999999999999873     34577766553

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00043  Score=41.04  Aligned_cols=37  Identities=19%  Similarity=0.474  Sum_probs=28.6

Q ss_pred             CCCCCCCCccccCCCCceeeCCCCCCCCCCCCcccCCccccCCCc
Q psy5750         172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDEC  216 (286)
Q Consensus       172 ~~C~~~~~~C~~~~g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC  216 (286)
                      ..|   ...|++++++|+|.|++||.+..     ++..|.+++++
T Consensus         8 GgC---~h~C~n~~g~~~C~C~~Gy~L~~-----D~~tC~~~~~~   44 (51)
T d2p3ua1           8 GDC---DQFCHEEQNSVVCSCARGYTLAD-----NGKACIPTGPY   44 (51)
T ss_dssp             GGC---SSEEEEETTEEEEECCTTEEECT-----TSSCEEESSSS
T ss_pred             CCc---ccEeecCCCCeEeEcCCCCEECC-----CCCccccCCcc
Confidence            456   46899999999999999999873     34578766654

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0024  Score=36.67  Aligned_cols=31  Identities=29%  Similarity=0.730  Sum_probs=24.2

Q ss_pred             CCCCCCCeee--eCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         221 PICNNNADCI--NRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       221 ~~C~~~~~C~--n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ..|.+ |.|.  .....|+|.|++||.|+  +||..
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~--RCe~~   44 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGV--RCEHF   44 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSST--TSCCC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceec--Cceee
Confidence            34887 6775  34578999999999999  88654

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0014  Score=38.44  Aligned_cols=33  Identities=24%  Similarity=0.506  Sum_probs=26.5

Q ss_pred             CCCCCCCeee-eCCCCeeeecCCCCcCCCCCcCCCC
Q psy5750         221 PICNNNADCI-NRPGTYQCQCKRGFSGDGFNCEEGK  255 (286)
Q Consensus       221 ~~C~~~~~C~-n~~g~y~C~C~~Gy~gdg~~C~~~~  255 (286)
                      ..|.+++.|. ...+.++|.|+.||.|+  .||..+
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~--rCe~~~   47 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGA--RCERVD   47 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETT--TTCEEC
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeC--CCccce
Confidence            3599988884 45677999999999999  997543

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0015  Score=39.52  Aligned_cols=37  Identities=24%  Similarity=0.577  Sum_probs=26.7

Q ss_pred             cCCCCCCCCCCCeeeeCC-CCeeeecCCCCcC--CCCCcCCC
Q psy5750         216 CMNYPPICNNNADCINRP-GTYQCQCKRGFSG--DGFNCEEG  254 (286)
Q Consensus       216 C~~~~~~C~~~~~C~n~~-g~y~C~C~~Gy~g--dg~~C~~~  254 (286)
                      |+.+.+.|.+  .|++++ ++|+|.|++||+-  |+++|+..
T Consensus         3 C~~~NGgC~h--~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   42 (57)
T d1rfnb_           3 CNIKNGRCEQ--FCKNSADNKVVCSCTEGYRLAENQKSCEPA   42 (57)
T ss_dssp             TTGGGGGCSS--EEEECTTSCEEEECCTTEEECTTSSSEEEC
T ss_pred             cCCCCCCccc--EeeeCCCCCeEeECCCCCEECCCCCccccC
Confidence            4444455764  899986 4899999999984  67777543

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0022  Score=37.44  Aligned_cols=32  Identities=22%  Similarity=0.604  Sum_probs=25.5

Q ss_pred             CCCCCCCeee-eCCCCeeeecCCCCcCCCCCcCCC
Q psy5750         221 PICNNNADCI-NRPGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       221 ~~C~~~~~C~-n~~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      ..|.+++.|. .....++|.|++||.|.  +||..
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~--RCe~~   45 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGA--RCEHA   45 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEEST--TSCEE
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEec--CCccc
Confidence            4588888774 44678999999999999  89654

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0077  Score=32.05  Aligned_cols=31  Identities=29%  Similarity=0.793  Sum_probs=24.5

Q ss_pred             CCCCCCeeeeC---CCCeeeecCCCCcCCCCCcCCC
Q psy5750         222 ICNNNADCINR---PGTYQCQCKRGFSGDGFNCEEG  254 (286)
Q Consensus       222 ~C~~~~~C~n~---~g~y~C~C~~Gy~gdg~~C~~~  254 (286)
                      .|.++++|+..   .+-..|.||.+|.|.  +||.+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~--HCEiD   36 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQ--HCEID   36 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEEST--TSCEE
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCce--eEEec
Confidence            38889999864   455689999999998  88543

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0052  Score=35.25  Aligned_cols=29  Identities=24%  Similarity=0.692  Sum_probs=23.3

Q ss_pred             CCCCCCCeeee--CCCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIV--EDDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~--~~g~~~C~C~~g~~~~~c~  103 (286)
                      ++|.+ |.|..  ....+.|.|++||.|..|+
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            78986 77864  3567899999999988776

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0039  Score=36.99  Aligned_cols=31  Identities=32%  Similarity=0.857  Sum_probs=23.3

Q ss_pred             CCCCCCCCeeeeCCC-CeeeecCCCCcC--CCCCcC
Q psy5750         220 PPICNNNADCINRPG-TYQCQCKRGFSG--DGFNCE  252 (286)
Q Consensus       220 ~~~C~~~~~C~n~~g-~y~C~C~~Gy~g--dg~~C~  252 (286)
                      .+.|.+  .|+++++ +|+|.|+.||+-  |+++|+
T Consensus         6 NGGC~h--~C~~~~~~~~~C~C~~Gy~L~~D~~tC~   39 (53)
T d2bz6l1           6 NGGCEQ--YCSDHTGTKRSCRCHEGYSLLADGVSCT   39 (53)
T ss_dssp             GGGCSS--EEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred             CCCCcC--EeeeCCCCCEEeECCCCCEECCCCCccc
Confidence            344654  7998876 589999999984  667773

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0059  Score=35.68  Aligned_cols=30  Identities=23%  Similarity=0.786  Sum_probs=24.8

Q ss_pred             CCCCCCCeeeeC-CCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIVE-DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~~-~g~~~C~C~~g~~~~~c~  103 (286)
                      +.|.+++.|... ...+.|.|+.||.|..|+
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            689998888544 667899999999988776

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.013  Score=35.21  Aligned_cols=38  Identities=21%  Similarity=0.470  Sum_probs=27.7

Q ss_pred             CCCCCCCCCccccCC-CCceeeCCCCCCCCCCCCcccCCccccCCCc
Q psy5750         171 PRACNPPHSTCTNLT-DYRTCNCDPGYQKDYLDDRRVAFVCTDVDEC  216 (286)
Q Consensus       171 ~~~C~~~~~~C~~~~-g~~~C~C~~G~~g~~~~~~~~~~~C~d~deC  216 (286)
                      +..|   ...|++.. ++|+|.|++||.+..     ++..|..+++.
T Consensus         7 NGgC---~h~C~~~~~~~~~C~C~~Gy~L~~-----D~~tC~~~~~f   45 (57)
T d1rfnb_           7 NGRC---EQFCKNSADNKVVCSCTEGYRLAE-----NQKSCEPAVPF   45 (57)
T ss_dssp             GGGC---SSEEEECTTSCEEEECCTTEEECT-----TSSSEEECSSS
T ss_pred             CCCc---ccEeeeCCCCCeEeECCCCCEECC-----CCCccccCCCc
Confidence            3456   46888875 489999999999873     34578776654

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.0082  Score=34.86  Aligned_cols=30  Identities=30%  Similarity=0.796  Sum_probs=24.0

Q ss_pred             CCCCCCCeeeeC-CCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIVE-DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~~-~g~~~C~C~~g~~~~~c~  103 (286)
                      +.|.+++.|... ...+.|.|++||.|..|+
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            678888877443 567899999999988776

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.023  Score=33.10  Aligned_cols=36  Identities=17%  Similarity=0.566  Sum_probs=24.2

Q ss_pred             CCcCCCCCCCCCCCeee------cCCCCeeEeCCCCccc--CCCce
Q psy5750         116 NECNAGTDLCHKNAMCF------NEIGSYSCQCRPGFTG--NGHQC  153 (286)
Q Consensus       116 ~~C~~~~~~C~~~~~C~------~~~g~~~C~C~~G~~g--~~~~C  153 (286)
                      ++|......|.+  .|+      +..++|+|.|+.||..  |+..|
T Consensus         5 neC~~~NGGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tC   48 (50)
T d1ijqa2           5 ERTTLSNGGCQY--LCLPAPQINPHSPKFTCACPDGMLLARDMRSC   48 (50)
T ss_dssp             SSSSSGGGGCSS--EEEECCCCSTTCCSEEEECCTTCEECTTSSCE
T ss_pred             cccCCCCCCCcC--ccCCCcCcccCCCCEEEeCCCCCEECCCCCcc
Confidence            455543355765  786      4557999999999983  34444

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.049  Score=28.86  Aligned_cols=29  Identities=21%  Similarity=0.542  Sum_probs=23.1

Q ss_pred             CCCCCCeeeeC---CCCCeEecCCCccccccc
Q psy5750          75 FCVANSSCIVE---DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        75 ~C~~~~~C~~~---~g~~~C~C~~g~~~~~c~  103 (286)
                      .|.++++|+..   .+-.+|.|+.+|.|..|+
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   34 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEE
Confidence            47889999975   233479999999988777

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.049  Score=30.07  Aligned_cols=29  Identities=24%  Similarity=0.804  Sum_probs=22.7

Q ss_pred             CCCCCCCeeee--CCCCeeeecCCCCcCCCCCcC
Q psy5750         221 PICNNNADCIN--RPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       221 ~~C~~~~~C~n--~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      +-|.+ |+|.-  ....+.|.|+.||.|.  +|+
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~C~~gY~G~--RCq   38 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCICHPGYHGE--RCH   38 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEEECTTEEST--TCC
T ss_pred             CEeEC-cEEeecCcCCCceeECCCCCeec--Ccc
Confidence            34776 88954  4567899999999999  885

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.051  Score=31.91  Aligned_cols=25  Identities=32%  Similarity=0.818  Sum_probs=19.6

Q ss_pred             CCCCCCCCccccCCC-CceeeCCCCCCCC
Q psy5750         172 RACNPPHSTCTNLTD-YRTCNCDPGYQKD  199 (286)
Q Consensus       172 ~~C~~~~~~C~~~~g-~~~C~C~~G~~g~  199 (286)
                      ..|   ...|++.++ +|.|.|+.||.+.
T Consensus         7 GGC---~h~C~~~~~~~~~C~C~~Gy~L~   32 (53)
T d2bz6l1           7 GGC---EQYCSDHTGTKRSCRCHEGYSLL   32 (53)
T ss_dssp             GGC---SSEEEEETTTEEEEECCTTEEEC
T ss_pred             CCC---cCEeeeCCCCCEEeECCCCCEEC
Confidence            456   457888765 5889999999887

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.18  Score=27.25  Aligned_cols=31  Identities=32%  Similarity=0.823  Sum_probs=22.3

Q ss_pred             cCCCcCCCCCCCCCCCeeeeC-CCCeeeecCCCCcC
Q psy5750         212 DVDECMNYPPICNNNADCINR-PGTYQCQCKRGFSG  246 (286)
Q Consensus       212 d~deC~~~~~~C~~~~~C~n~-~g~y~C~C~~Gy~g  246 (286)
                      .+|+|...+  |..  .|... ++.|+|.|.+||..
T Consensus         3 ~vDPCf~~~--CE~--qCqP~~~~~Y~CiCaeGFaP   34 (43)
T d1dx5i1           3 PVDPCFRAN--CEY--QCQPLDQTSYLCVCAEGFAP   34 (43)
T ss_dssp             CCCGGGGCC--CSS--EEEECSSSCEEEECCTTEEE
T ss_pred             ccccccCCC--cce--eeeeCCCCcceEEecccccc
Confidence            356776543  654  78655 57899999999974

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=0.18  Score=27.29  Aligned_cols=32  Identities=28%  Similarity=0.656  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCCCeeeeC-CCCCeEecCCCcccc
Q psy5750          67 NDDPCKNFFCVANSSCIVE-DDKPTCICNRGFQQL  100 (286)
Q Consensus        67 ~~~~C~~~~C~~~~~C~~~-~g~~~C~C~~g~~~~  100 (286)
                      .+|+|...+|..  .|... .+.|+|.|..||.-.
T Consensus         3 ~vDPCf~~~CE~--qCqP~~~~~Y~CiCaeGFaP~   35 (43)
T d1dx5i1           3 PVDPCFRANCEY--QCQPLDQTSYLCVCAEGFAPI   35 (43)
T ss_dssp             CCCGGGGCCCSS--EEEECSSSCEEEECCTTEEEE
T ss_pred             ccccccCCCcce--eeeeCCCCcceEEeccccccC
Confidence            467888888865  88877 568999999999743

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.15  Score=28.01  Aligned_cols=29  Identities=28%  Similarity=0.722  Sum_probs=22.0

Q ss_pred             CCCCCCCeeeeC--CCCCeEecCCCccccccc
Q psy5750          74 FFCVANSSCIVE--DDKPTCICNRGFQQLYSE  103 (286)
Q Consensus        74 ~~C~~~~~C~~~--~g~~~C~C~~g~~~~~c~  103 (286)
                      +-|.+ |+|.-.  ...+.|.|..||.|..|+
T Consensus         8 ~yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_           8 DFCIH-GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             TCCSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CEeEC-cEEeecCcCCCceeECCCCCeecCcc
Confidence            45775 899643  557789999999987664

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.26  E-value=0.27  Score=26.92  Aligned_cols=22  Identities=32%  Similarity=1.005  Sum_probs=17.4

Q ss_pred             CCCeeeeCCCCeeeecCCCCcCCCCCcC
Q psy5750         225 NNADCINRPGTYQCQCKRGFSGDGFNCE  252 (286)
Q Consensus       225 ~~~~C~n~~g~y~C~C~~Gy~gdg~~C~  252 (286)
                      .+++|++.    .|+|.+||+|+  .||
T Consensus        19 ~hG~C~~G----~C~C~~Gw~G~--~Ce   40 (41)
T d1l3ya_          19 GRGLCFCG----KCRCHPGFEGS--ACQ   40 (41)
T ss_dssp             HHEEEETT----EEEECTTCCTT--TTC
T ss_pred             CCCeEECC----EEEcCCCCccc--Ccc
Confidence            36788743    79999999998  774