Psyllid ID: psy5754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGKETA
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mykkaheniradpahikkekktptvdskgkiqkpkrwnkKKLTLAQRKERVSTAKANFLKKLGKETA
Flexible Loop (DISEMBL)
mykkaheniradpahikkekktptvdskgkiqkpkrwnkkkltlaqrkervstakanflkklgketa
Low Complexity Region (SEG)
MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGKETA
Disordered region (IsUnstruct)
*******************************************************************
Disordered Region (DISOPRED)
MYKKAHENIRADP*************************************VSTAKANF**KLG****
Disordered Region (DISEMBL)
********IRADPAHIKK*****************RWNKKKLTLAQRKERVSTAKANFLKKLGKETA
Disordered Region (DISPRO)
MYKKAHENIRA***********************KRW*KKKLTLAQRKERVSTAKANFLKKLGK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGKETA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
O76190	299	60S ribosomal protein L5	N/A	N/A	0.820	0.183	0.580	5e-11
Q5XUC7	300	60S ribosomal protein L5	N/A	N/A	0.865	0.193	0.553	5e-10
Q56FG6	297	60S ribosomal protein L5	N/A	N/A	0.805	0.181	0.516	2e-07
Q6JWW5	303	60S ribosomal protein L5	N/A	N/A	0.761	0.168	0.5	8e-07
Q9W5R8	299	60S ribosomal protein L5	no	N/A	0.880	0.197	0.454	4e-06
Q4KTI3	293	60S ribosomal protein L5	N/A	N/A	0.805	0.184	0.435	6e-06
Q26481	295	60S ribosomal protein L5	N/A	N/A	0.761	0.172	0.483	9e-06
O65353	297	60S ribosomal protein L5	N/A	N/A	0.791	0.178	0.467	0.0001
P15125	296	60S ribosomal protein L5-	N/A	N/A	0.761	0.172	0.483	0.0001
P15126	296	60S ribosomal protein L5-	N/A	N/A	0.761	0.172	0.483	0.0002

>sp|O76190|RL5_BOMMO 60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 7/62 (11%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE IRADP+H KKE K  +V       K KRWNK+KLTLA+RK R+   KA+F+K
Sbjct: 239 IYKKAHEAIRADPSHKKKELKKDSV-------KQKRWNKRKLTLAERKNRIKQKKASFIK 291

Query: 61  KL 62
           +L
Sbjct: 292 RL 293

This protein binds 5S RNA.
Bombyx mori (taxid: 7091)

>sp|Q5XUC7|RL5_TOXCI 60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 7/65 (10%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAHENIR+DP   +K KK  +       ++PKRWN KKLT A+RK+RV  AKA +LK
Sbjct: 239 MYKKAHENIRSDPKRDRKPKKDVS-------KEPKRWNAKKLTNAERKQRVVEAKAAYLK 291

Query: 61  KLGKE 65
           +L  E
Sbjct: 292 ELQGE 296

This protein binds 5S RNA.

Toxoptera citricida (taxid: 223852)

>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 8/62 (12%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAHE IRADP       +   V +K  ++K  RWN+ KLTL++RK+RV   KA+F K
Sbjct: 239 MYKKAHEAIRADP------DRAEIVKTKEPVKK--RWNRAKLTLSERKDRVKQIKASFQK 290

Query: 61  KL 62
           KL
Sbjct: 291 KL 292

This protein binds 5S RNA.

Lysiphlebus testaceipes (taxid: 77504)

>sp|Q6JWW5|RL5_OIKDI 60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 9/60 (15%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAH  IRADP+   K K   TVD K       RWN+ K++ AQR+ RV+  KA+FL+
Sbjct: 247 MYKKAHAAIRADPS--PKAKVEKTVDKK-------RWNRAKISYAQRRARVAQVKASFLR 297

This protein binds 5S RNA.

Oikopleura dioica (taxid: 34765)

>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 7/66 (10%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAH+ IR DP H    KK+  V         KRWN KKLT  QRK +++  KA ++ 
Sbjct: 239 IYKKAHQAIRNDPTHKVTAKKSSAV-------TKKRWNAKKLTNEQRKTKIAAHKAAYVA 291

Query: 61  KLGKET 66
           KL  ET
Sbjct: 292 KLQSET 297

This protein binds 5S RNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 8/62 (12%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MY+ AH  IRA+PAH KK+ +   V         KRWN+ K++L Q+++RV   KA +LK
Sbjct: 239 MYRDAHAKIRANPAHEKKQPRDGLV--------KKRWNRAKMSLKQKRDRVKQKKAAYLK 290

Query: 61  KL 62
            L
Sbjct: 291 TL 292

This protein binds 5S RNA.

Suberites domuncula (taxid: 55567)

>sp|Q26481|RL5_STYCL 60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 9/60 (15%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MY KAH  IR DP   KK       D  GK    KRWN+KK+T +QR++RV   KA+FL+
Sbjct: 239 MYTKAHAAIREDPTPKKK------TDFAGK---TKRWNRKKMTFSQRRDRVKQKKASFLR 289

This protein binds 5S RNA.

Styela clava (taxid: 7725)

>sp|O65353|RL5_HELAN 60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 9/62 (14%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE IRA+PA     KK             KRW +KKLT  QR+ +V+ AKA +LK
Sbjct: 239 LYKKAHEAIRANPARKTVAKKA---------HPKKRWTEKKLTREQRQGKVAAAKAEWLK 289

Query: 61  KL 62
           K+
Sbjct: 290 KI 291

This protein binds 5S RNA.

Helianthus annuus (taxid: 4232)

>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-a PE=2 SV=2

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 9/60 (15%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAH  IR +P H KK KK           K KRWN+ KL+L Q+K+RV+  KA+FL+
Sbjct: 239 LYKKAHAGIRENPVHEKKPKKE---------VKKKRWNRAKLSLEQKKDRVAQKKASFLR 289

This protein binds 5S RNA.

Xenopus laevis (taxid: 8355)

>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-b PE=2 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 9/60 (15%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAH  IR +P H KK KK           K KRWN+ KL+L Q+K+RV+  KA+FL+
Sbjct: 239 IYKKAHAGIRENPVHEKKPKKE---------VKKKRWNRAKLSLEQKKDRVAQKKASFLR 289

This protein binds 5S RNA.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
268306434	299	ribosomal protein L5 [Manduca sexta]	0.805	0.180	0.619	2e-10
112983276	299	60S ribosomal protein L5 [Bombyx mori] g	0.820	0.183	0.580	2e-09
54609197	299	ribosomal protein L5 [Bombyx mori]	0.820	0.183	0.580	2e-09
357617373	297	ribosomal protein L5 [Danaus plexippus]	0.865	0.195	0.567	5e-09
392877636	297	60S ribosomal protein L5-like protein [C	0.776	0.175	0.55	9e-09
392881454	297	ribosomal protein L5 [Callorhinchus mili	0.776	0.175	0.55	9e-09
392873954	297	ribosomal protein L5 [Callorhinchus mili	0.776	0.175	0.55	9e-09
315115445	297	ribosomal protein L5 [Euphydryas aurinia	0.850	0.191	0.575	1e-08
392879010	297	ribosomal protein L5 [Callorhinchus mili	0.776	0.175	0.55	1e-08
392879128	297	ribosomal protein L5 [Callorhinchus mili	0.776	0.175	0.55	1e-08

>gi|268306434|gb|ACY95338.1| ribosomal protein L5 [Manduca sexta]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 9/63 (14%)

Query: 1   MYKKAHENIRADPAHIKKE-KKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFL 59
           +YKKAHENIRADP+H KKE KK P         K KRW+K+KLTLA+RK R+S  KA+FL
Sbjct: 239 LYKKAHENIRADPSHKKKEVKKDPA--------KQKRWSKRKLTLAERKNRISQKKASFL 290

Query: 60  KKL 62
           K+L
Sbjct: 291 KRL 293

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983276|ref|NP_001037008.1| 60S ribosomal protein L5 [Bombyx mori] gi|6094084|sp|O76190.1|RL5_BOMMO RecName: Full=60S ribosomal protein L5 gi|3282245|gb|AAC24960.1| ribosomal protein L5 [Bombyx mori]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 7/62 (11%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE IRADP+H KKE K  +V       K KRWNK+KLTLA+RK R+   KA+F+K
Sbjct: 239 IYKKAHEAIRADPSHKKKELKKDSV-------KQKRWNKRKLTLAERKNRIKQKKASFIK 291

Query: 61  KL 62
           +L
Sbjct: 292 RL 293

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|54609197|gb|AAV34814.1| ribosomal protein L5 [Bombyx mori]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 7/62 (11%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE IRADP+H KKE K  +V       K KRWNK+KLTLA+RK R+   KA+F+K
Sbjct: 239 IYKKAHEAIRADPSHKKKELKKDSV-------KQKRWNKRKLTLAERKNRIKQKKASFIK 291

Query: 61  KL 62
           +L
Sbjct: 292 RL 293

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617373|gb|EHJ70750.1| ribosomal protein L5 [Danaus plexippus]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 9/67 (13%)

Query: 1   MYKKAHENIRADPAHIKKE-KKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFL 59
           +YKKAHE IRADP+H KKE KK P         K KRWNK+KLTLA+RK R+   KA+F+
Sbjct: 239 LYKKAHELIRADPSHKKKESKKDPA--------KQKRWNKRKLTLAERKNRIKQKKASFI 290

Query: 60  KKLGKET 66
           K+L  E 
Sbjct: 291 KRLQAEA 297

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392877636|gb|AFM87650.1| 60S ribosomal protein L5-like protein [Callorhinchus milii]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 8/60 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE+IRA+P H KK +K        KI KPKRWN+ K +LAQRK+RV+  KA++L+
Sbjct: 239 IYKKAHESIRANPVHEKKPEK--------KITKPKRWNRAKFSLAQRKDRVAQRKASYLR 290

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392881454|gb|AFM89559.1| ribosomal protein L5 [Callorhinchus milii]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 8/60 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE+IRA+P H KK +K        KI KPKRWN+ K +LAQRK+RV+  KA++L+
Sbjct: 239 IYKKAHESIRANPVHEKKPEK--------KITKPKRWNRAKFSLAQRKDRVAQRKASYLR 290

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392873954|gb|AFM85809.1| ribosomal protein L5 [Callorhinchus milii] gi|392874114|gb|AFM85889.1| ribosomal protein L5 [Callorhinchus milii] gi|392876012|gb|AFM86838.1| ribosomal protein L5 [Callorhinchus milii] gi|392876206|gb|AFM86935.1| ribosomal protein L5 [Callorhinchus milii] gi|392878946|gb|AFM88305.1| ribosomal protein L5 [Callorhinchus milii] gi|392881166|gb|AFM89415.1| ribosomal protein L5 [Callorhinchus milii]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 8/60 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE+IRA+P H KK +K        KI KPKRWN+ K +LAQRK+RV+  KA++L+
Sbjct: 239 IYKKAHESIRANPVHEKKPEK--------KITKPKRWNRAKFSLAQRKDRVAQRKASYLR 290

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|315115445|gb|ADT80695.1| ribosomal protein L5 [Euphydryas aurinia]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 45/66 (68%), Gaps = 9/66 (13%)

Query: 1   MYKKAHENIRADPAHIKKE-KKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFL 59
           +YKKAHE IRADP+H KKE KK P         K KRWNK+KLTLA+RK R+   K +FL
Sbjct: 239 LYKKAHEAIRADPSHKKKEGKKDPA--------KQKRWNKRKLTLAERKNRIKQKKESFL 290

Query: 60  KKLGKE 65
           K+L  E
Sbjct: 291 KRLQAE 296

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392879010|gb|AFM88337.1| ribosomal protein L5 [Callorhinchus milii]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 8/60 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE+IRA+P H KK +K        KI KPKRWN+ K +LAQRK+RV+  KA++L+
Sbjct: 239 IYKKAHESIRANPVHEKKPEK--------KITKPKRWNRAKFSLAQRKDRVAQRKASYLR 290

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392879128|gb|AFM88396.1| ribosomal protein L5 [Callorhinchus milii]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 8/60 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +YKKAHE+IRA+P H KK +K        KI KPKRWN+ K +LAQRK+RV+  KA++L+
Sbjct: 239 IYKKAHESIRANPVHEKKPEK--------KITKPKRWNRAKFSLAQRKDRVAQRKASYLR 290

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
ZFIN|ZDB-GENE-030131-5161	297	rpl5a "ribosomal protein L5a"	0.761	0.171	0.516	1.6e-09
ZFIN|ZDB-GENE-040625-93	328	rpl5b "ribosomal protein L5b"	0.835	0.170	0.507	1.6e-09
UNIPROTKB|G3N1F5	297	RPL5 "60S ribosomal protein L5	0.761	0.171	0.483	3.5e-08
UNIPROTKB|Q58DW5	297	RPL5 "60S ribosomal protein L5	0.761	0.171	0.483	3.5e-08
UNIPROTKB|F1P7B0	297	RPL5 "Uncharacterized protein"	0.761	0.171	0.483	3.5e-08
UNIPROTKB|P46777	297	RPL5 "60S ribosomal protein L5	0.761	0.171	0.483	3.5e-08
UNIPROTKB|F1S530	297	RPL5 "60S ribosomal protein L5	0.761	0.171	0.483	3.5e-08
RGD|6502004	62	LOC100909743 "60S ribosomal pr	0.761	0.822	0.45	5.3e-08
FB|FBgn0064225	299	RpL5 "Ribosomal protein L5" [D	0.880	0.197	0.454	5.9e-08
MGI|MGI:102854	297	Rpl5 "ribosomal protein L5" [M	0.761	0.171	0.466	7.4e-08

ZFIN|ZDB-GENE-030131-5161 rpl5a "ribosomal protein L5a" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/60 (51%), Positives = 43/60 (71%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH +IR +P H +K K+        +++K KRWN+ KLTLAQRK+RV+  KA+FL+
Sbjct:   239 MYKKAHASIRENPVHERKPKR--------EVKK-KRWNRAKLTLAQRKDRVAQKKASFLR 289

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

ZFIN|ZDB-GENE-040625-93 rpl5b "ribosomal protein L5b" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P H KK K+        +++K KRWN+ KLTLAQRK+RV+  KA+FL+
Sbjct:   271 MYKKAHAAIRENPVHEKKPKR--------EVKK-KRWNRAKLTLAQRKDRVAQKKASFLR 321

Query:    61 KLGKE 65
                 E
Sbjct:   322 AQAAE 326

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

UNIPROTKB|G3N1F5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK KK        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKK--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q58DW5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK KK        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKK--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1P7B0 RPL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK KK        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKK--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK KK        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKK--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IMP

GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK KK        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKK--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|6502004 LOC100909743 "60S ribosomal protein L5-like" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             +YKKAH  IR +P + KK K+        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:     4 IYKKAHAAIRENPVYEKKPKR--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 54

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 30/66 (45%), Positives = 38/66 (57%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             +YKKAH+ IR DP H    KK+  V  K       RWN KKLT  QRK +++  KA ++ 
Sbjct:   239 IYKKAHQAIRNDPTHKVTAKKSSAVTKK-------RWNAKKLTNEQRKTKIAAHKAAYVA 291

Query:    61 KLGKET 66
             KL  ET
Sbjct:   292 KLQSET 297

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=IEA;ISS

GO:0008097 "5S rRNA binding" evidence=IEA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IDA

MGI|MGI:102854 Rpl5 "ribosomal protein L5" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 28/60 (46%), Positives = 42/60 (70%)

Query:     1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
             MYKKAH  IR +P + KK K+        +++K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct:   239 MYKKAHAAIRENPVYEKKPKR--------EVKK-KRWNRPKMSLAQKKDRVAQKKASFLR 289

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0008097 "5S rRNA binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
pfam14204	93	pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin	4e-11
PTZ00069	300	PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov	3e-09

>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region

 Score = 52.9 bits (128), Expect = 4e-11
 Identities = 30/51 (58%), Positives = 33/51 (64%), Gaps = 7/51 (13%)

Query: 1  MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERV 51
          MYKKAH  IRADP+  KKEKK    +S       KR+N KKLTL QRK RV
Sbjct: 47 MYKKAHAAIRADPSRKKKEKKEVKAES-------KRYNAKKLTLEQRKARV 90

This domain is the C-terminal end of ribosomal L18/L5 proteins. Length = 93

>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 6/65 (9%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAH  IRA+P+ +KK+KK      K K    K++  KKLT  QRK RV   KA   +
Sbjct: 240 MYKKAHAAIRANPSKVKKKKK------KKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293

Query: 61  KLGKE 65
           +L K+
Sbjct: 294 RLQKK 298

Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF14204	94	Ribosomal_L18_c: Ribosomal L18 C-terminal region;	99.42
KOG0875|consensus	264		99.39
PTZ00069	300	60S ribosomal protein L5; Provisional	99.35

>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q

Probab=99.42  E-value=6.2e-15  Score=92.98  Aligned_cols=47  Identities=55%  Similarity=0.743  Sum_probs=38.6

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHH
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTA   54 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K   54 (67)
                      ||++||++||+||++.+++++.    +   ...+++|+.+|||++||++||++|
T Consensus        48 ~y~~~h~~Ir~dP~~~~k~~k~----~---~~~~k~~~~~Klt~~eRk~rv~~K   94 (94)
T PF14204_consen   48 MYKKAHAAIREDPSPKKKEKKE----Y---KAEKKRYKPKKLTLEERKARVKQK   94 (94)
T ss_dssp             HHHHHHHCCCHSCCCCCCSTSS----S----CHHHHHSCCCCCHHHHCCHSCCC
T ss_pred             HHHHHHHHHHhCcccccccccc----c---chhhcccCcccCCHHHHHHHHhcC
Confidence            7999999999999988777533    1   114699999999999999999764

>KOG0875|consensus

Probab=99.39  E-value=3.4e-13  Score=97.28  Aligned_cols=53  Identities=49%  Similarity=0.674  Sum_probs=46.7

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHh
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKL   62 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~   62 (67)
                      ||++||++||+||+++++++..        . ++++|+.++||++||+++|++|+++|+..+
T Consensus       211 ~y~~ahaaIra~p~~~k~~k~~--------k-~~k~~~~~klt~eerk~rv~~k~~~~~~~~  263 (264)
T KOG0875|consen  211 MYKKAHAAIRADPSPKKTEKAA--------K-ESKRYNAKKLTYEERKDQVAQKVAALLGAQ  263 (264)
T ss_pred             HHHHHHHHhhcccCcccccccc--------c-cchhhccccCCHHHHHHHHHHHHHHhhccC
Confidence            7999999999999998887733        2 679999999999999999999999987543

>PTZ00069 60S ribosomal protein L5; Provisional

Probab=99.35  E-value=1.4e-12  Score=95.69  Aligned_cols=59  Identities=49%  Similarity=0.682  Sum_probs=48.0

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHhCcc
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGKE   65 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~~~~   65 (67)
                      ||++||++||+||++++++++.   .|.  . ++++|+.+|||++||++||++++++++...+..
T Consensus       240 ~y~~ah~~Ir~~P~~~~~~kk~---~~~--~-~~Kr~~~~Klt~~qrk~rv~~k~a~~~~~~q~~  298 (300)
T PTZ00069        240 MYKKAHAAIRANPSKVKKKKKK---KKK--V-VHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK  298 (300)
T ss_pred             HHHHHHHHHHhCcCccCccccc---ccc--c-cccccccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7999999999999877655432   121  2 568999999999999999999999998776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
2zkr_n	297	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-05

>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAH  IR +P + KK KK           K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	7e-11
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	2e-10
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	2e-10
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	2e-09

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297

 Score = 53.1 bits (127), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           MYKKAH  IR +P + KK KK           K KRWN+ K++LAQ+K+RV+  KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKEV---------KKKRWNRPKMSLAQKKDRVAQKKASFLR 289

Query: 61  KLGKET 66
              +  
Sbjct: 290 AQERAA 295

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           ++ K H  IR +P  +K  KK             K++   KLT AQRK+RV T     L 
Sbjct: 246 LFTKVHAEIRKNPERVKSTKKNDKPKR-----DHKKFYPTKLTAAQRKDRVKTKFQLALS 300

Query: 61  K 61
           +
Sbjct: 301 Q 301

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297

 Score = 50.5 bits (120), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 1   MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
           +Y  AHE IRADPA    EKK        +    K++ + KL+  +R  RV+   A    
Sbjct: 239 IYTSAHEAIRADPAFKPTEKKFTKEQYAAE---SKKYRQTKLSKEERAARVAAKIAALAG 295

Query: 61  K 61
           +
Sbjct: 296 Q 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
3u5e_D	297	60S ribosomal protein L5; translation, ribosome, r	99.54
4a17_M	301	RPL5, 60S ribosomal protein L5; eukaryotic ribosom	99.45
2zkr_n	297	60S ribosomal protein L5; protein-RNA complex, 60S	99.41
3iz5_Q	304	60S ribosomal protein L5 (L18P); eukaryotic riboso	99.09

>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E

Probab=99.54  E-value=9.5e-16  Score=111.11  Aligned_cols=57  Identities=35%  Similarity=0.502  Sum_probs=48.6

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHH
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK   60 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~   60 (67)
                      ||++||++||+||++++++++.++++|+.   .+++||.+|||++||++||++|+++|.+
T Consensus       239 ~y~~~h~~Ir~~P~~~k~~~~k~~~~~~~---~~k~~~~~klt~~qrk~~v~~k~~~~~~  295 (297)
T 3u5e_D          239 IYTSAHEAIRADPAFKPTEKKFTKEQYAA---ESKKYRQTKLSKEERAARVAAKIAALAG  295 (297)
T ss_dssp             HHHHHHHHHHHCCSCCCCCCSSCHHHHHH---HHHTTCCCCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhCcccccccccccccccch---hccccCcccCCHHHHHHHHHHHHHHHhh
Confidence            79999999999999887776554455644   5689999999999999999999999864

>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M

Probab=99.45  E-value=3.7e-14  Score=102.93  Aligned_cols=55  Identities=38%  Similarity=0.529  Sum_probs=45.4

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHH
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK   60 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~   60 (67)
                      ||++||++||+||++++++++.  ++|..   .+++||.+|||++||++||++|+++|.+
T Consensus       246 ~y~~~h~~Ir~~p~~~k~~~~~--~~~~~---~~k~~~~~klt~~qrk~~v~~k~~~~~~  300 (301)
T 4a17_M          246 LFTKVHAEIRKNPERVKSTKKN--DKPKR---DHKKFYPTKLTAAQRKDRVKTKFQLALS  300 (301)
T ss_dssp             HHHHHHHHHHHSCCCCCCCCCC--CCCCH---HHHHHSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcccccccccc--ccccc---cccccCcccCCHHHHHHHHHHHHHHHhc
Confidence            7999999999999987765432  23333   4689999999999999999999999864

>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.41  E-value=1.7e-14  Score=104.52  Aligned_cols=55  Identities=53%  Similarity=0.850  Sum_probs=8.7

Q ss_pred             ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHhCc
Q psy5754           1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGK   64 (67)
Q Consensus         1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~~~   64 (67)
                      ||++||++||+||+++++++++        . ..++||.+|||++||++||++|+++|+..++.
T Consensus       239 ~y~~~~~~Ir~~P~~~~~~k~~--------~-~~k~~~~~klt~~qrk~rv~~k~~~~~~~~~~  293 (297)
T 2zkr_n          239 MYKKAHAAIRENPVYEKKPKKE--------V-KKKRWNRPKMSLAQKKDRVAQKKASFLRAQER  293 (297)
T ss_dssp             HHHHHHHHC-------------------------------------------------------
T ss_pred             HHHHHHHHHHhCCCcccccccc--------c-ccccccccccChHHHHHHHHHHHHHHHHhhhh
Confidence            7999999999999988777654        2 13899999999999999999999999965443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00