Psyllid ID: psy5792
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | 2.2.26 [Sep-21-2011] | |||||||
| Q07954 | 4544 | Prolow-density lipoprotei | yes | N/A | 0.708 | 0.058 | 0.378 | 3e-45 | |
| P98157 | 4543 | Low-density lipoprotein r | no | N/A | 0.708 | 0.058 | 0.370 | 2e-44 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | yes | N/A | 0.848 | 0.070 | 0.329 | 3e-44 | |
| Q9NZR2 | 4599 | Low-density lipoprotein r | no | N/A | 0.655 | 0.053 | 0.374 | 7e-42 | |
| Q9JI18 | 4599 | Low-density lipoprotein r | no | N/A | 0.551 | 0.045 | 0.398 | 4e-41 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | no | N/A | 0.514 | 0.120 | 0.346 | 2e-31 | |
| O88572 | 1613 | Low-density lipoprotein r | no | N/A | 0.503 | 0.117 | 0.352 | 8e-31 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.514 | 0.120 | 0.336 | 9e-31 | |
| O75581 | 1613 | Low-density lipoprotein r | no | N/A | 0.726 | 0.169 | 0.276 | 3e-30 | |
| Q8VI56 | 1905 | Low-density lipoprotein r | no | N/A | 0.557 | 0.110 | 0.297 | 1e-27 |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 182 bits (463), Expect = 3e-45, Method: Composition-based stats.
Identities = 110/291 (37%), Positives = 159/291 (54%), Gaps = 24/291 (8%)
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHKGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2094
|
Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats.
Identities = 107/289 (37%), Positives = 156/289 (53%), Gaps = 22/289 (7%)
Query: 87 DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS--------- 137
DG+ TVLRN+ + + S + N Q+ P S+ S
Sbjct: 1814 DGTEVTVLRNSTTLVMLMKVYDESIQQAGSNPCSVNNGDCSQLCLPTSETSRSCMCTAGY 1873
Query: 138 -LAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAE 196
L + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1874 SLKSGQQSCEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHAEN 1929
Query: 197 DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1930 DTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQGF 1982
Query: 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++ +L
Sbjct: 1983 DVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERMVL 2042
Query: 317 AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
I I++D ++ ++YWC ++ +E +D G ++ LSS+
Sbjct: 2043 VNVSISWPNGISVDYEDGKLYWC-DARTDKIERIDLETGENREVVLSSD 2090
|
Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Composition-based stats.
Identities = 117/355 (32%), Positives = 181/355 (50%), Gaps = 35/355 (9%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1757 LYWISSGNHTINRCNLDGSELEVIDTMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1816
Query: 87 DGSNSTVLRNNA------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKV---- 136
DGS S VLRN+ + D + + G + + N Q+ P S+
Sbjct: 1817 DGSGSVVLRNSTTLVMHMKVYDESIQLEHEGTNPCSV----NNGDCSQLCLPTSETTRSC 1872
Query: 137 ------SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKV 190
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +
Sbjct: 1873 MCTAGYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGI 1928
Query: 191 DFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250
DFHA D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIY
Sbjct: 1929 DFHAENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIY 1981
Query: 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310
W+D +VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G P I R+ LDG
Sbjct: 1982 WTDQGFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGHYPRIERSRLDG 2041
Query: 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
++ +L I I++D + ++YWC + +E +D G ++ LSSN
Sbjct: 2042 TERVVLVNVSISWPNGISVDYQGGKLYWC-DARMDKIERIDLETGENREVVLSSN 2095
|
Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 7e-42, Method: Composition-based stats.
Identities = 106/283 (37%), Positives = 147/283 (51%), Gaps = 36/283 (12%)
Query: 88 GSNSTVLRNNAGISDFILFSVNSGYDIM---GIKYNKNESKVQQVLGPLSKVSLAAKVDF 144
GSNS L NN G S L + + M G KN Q
Sbjct: 1834 GSNSCQL-NNGGCSQLCLPTSETTRTCMCTVGYYLQKNRMSCQ----------------- 1875
Query: 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI 204
GI F+++SV+ G I GI ++ L P+S S A +DFHA D IYW D+
Sbjct: 1876 --GIESFLMYSVHEG--IRGIPLEPSDK--MDALMPISGTSFAVGIDFHAENDTIYWTDM 1929
Query: 205 DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264
ISR RD T +E+II + + IAVDWIA NIYW+D N+IEVARL
Sbjct: 1930 GFNKISRAKRDQTWKEDIIT-------NGLGRVEGIAVDWIAGNIYWTDHGFNLIEVARL 1982
Query: 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPI 324
G +RYV+IS G+DQP ++AV PE G LFW+E G++P I +A LDG ++ +L I
Sbjct: 1983 NGSFRYVIISQGLDQPRSIAVHPEKGLLFWTEWGQMPCIGKARLDGSEKVVLVSMGIAWP 2042
Query: 325 KDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNI 366
I++D + ++YWC ++ +E +D G ++ LS SN+
Sbjct: 2043 NGISIDYEENKLYWC-DARTDKIERIDLETGGNREMVLSGSNV 2084
|
Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 4e-41, Method: Composition-based stats.
Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 13/221 (5%)
Query: 147 GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH 206
GI F+++SV+ G I GI + L P+S + A +DFHA D IYW D+
Sbjct: 1876 GIESFLMYSVHEG--IRGIPLEPRDK--VDALMPISGAAFAVGIDFHAENDTIYWTDMGL 1931
Query: 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266
ISR RD T +E+++ + + IAVDWIA NIYW+D N+IEVARL G
Sbjct: 1932 NKISRAKRDQTWKEDVVT-------NGLGRVEGIAVDWIAGNIYWTDHGFNLIEVARLNG 1984
Query: 267 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 326
+RYV+IS G+DQP ++AV PE G+LFW+E G++P I +A LDG ++ ++ I
Sbjct: 1985 SFRYVIISQGLDQPRSIAVHPEKGFLFWTEWGQVPCIGKARLDGSEKVMIVSVGITWPNG 2044
Query: 327 ITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNI 366
I++D + ++YWC S+ +E +D G+ ++ LS SN+
Sbjct: 2045 ISIDYEENKLYWC-DARSDKIERIDLDTGANREVLLSGSNV 2084
|
Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis. Mus musculus (taxid: 10090) |
| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 121/208 (58%), Gaps = 14/208 (6%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
F++F+ + + ++ N N+ + PL+ V A+ +DF + ++IYW D+ TIS
Sbjct: 645 FLVFTSRATIHRISLETNNNDVAI-----PLTGVKEASALDFDVSNNHIYWTDVSLKTIS 699
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
R +G+ E++IE+ +D +AVDW+ +N+YW+D N IEVARL GQ+R
Sbjct: 700 RAFMNGSSVEHVIEFG-------LDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQ 752
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
VL+ +D P +LA+DP GY++W+E G P I RA +DG L ++ D+T+D
Sbjct: 753 VLVWRDLDNPRSLALDPTKGYIYWTEWGGKPRIVRAFMDGTNCMTLVDKVGR-ANDLTID 811
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKM 358
++R+YW + +N++ES + G +M
Sbjct: 812 YADQRLYW-TDLDTNMIESSNMLGQERM 838
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 117/204 (57%), Gaps = 14/204 (6%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
F+LFS + + ++ N N + PL+ V A+ +DF ++ IYW DI TIS
Sbjct: 633 FLLFSRRADIRRISLETNNNNVAI-----PLTGVKEASALDFDVTDNRIYWTDISLKTIS 687
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
R +G+ E+++E+ +D +AVDW+ +N+YW+D N IEV++L GQ+R
Sbjct: 688 RAFMNGSALEHVVEF-------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 740
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L + +T+D
Sbjct: 741 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-ANGLTID 799
Query: 331 RKNKRVYWCYSVGSNVLESMDYSG 354
+R+YW + +N++ES D G
Sbjct: 800 YAKRRLYW-TDLDTNLIESSDMLG 822
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 14/208 (6%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
F++F+ + + ++ N N+ + PL+ V A+ +DF + ++IYW D+ TIS
Sbjct: 646 FLVFTSRAAIHRISLETNNNDVAI-----PLTGVKEASALDFDVSNNHIYWTDVSLKTIS 700
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
R +G+ E+++E+ +D +AVDW+ +N+YW+D N IEVARL GQ+R
Sbjct: 701 RAFMNGSSVEHVVEF-------GLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQ 753
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
VL+ +D P +LA+DP GY++W+E G P I RA +DG L ++ D+T+D
Sbjct: 754 VLVWRDLDNPRSLALDPTKGYIYWTEWGGKPRIVRAFMDGTNCMTLVDKVGR-ANDLTID 812
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKM 358
++R+YW + +N++ES + G ++
Sbjct: 813 YADQRLYW-TDLDTNMIESSNMLGQERV 839
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 166/347 (47%), Gaps = 73/347 (21%)
Query: 62 VAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNN--------AGISDFILFS------ 107
+A + +G+I + DA I +N DG+ VL + + D++ ++
Sbjct: 495 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRS 554
Query: 108 --------------VNSGYDIMGIKYNKNESKVQQVLG--PLSK---------------V 136
++ D+MG+K + V +V+G P ++ +
Sbjct: 555 IERVHKRSAEREVIIDQLPDLMGLK----ATNVHRVIGSNPCAEENGGCSHLCLYRPQGL 610
Query: 137 SLAAKVDFHAGISD---------FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLA 187
A + F ISD F+LFS + + ++ N N + PL+ V A
Sbjct: 611 RCACPIGFEL-ISDMKTCIVPEAFLLFSRRADIRRISLETNNNNVAI-----PLTGVKEA 664
Query: 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQ 247
+ +DF ++ IYW DI TISR +G+ E+++E+ +D +AVDW+ +
Sbjct: 665 SALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-------GLDYPEGMAVDWLGK 717
Query: 248 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307
N+YW+D N IEV++L GQ+R VL+ +D P ALA+DP G+++W+E G P I RA
Sbjct: 718 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 777
Query: 308 LDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354
+DG ++T L + +T+D +R+YW + +N++ES + G
Sbjct: 778 MDGSERTTLVPNVGR-ANGLTIDYAKRRLYW-TDLDTNLIESSNMLG 822
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 129/232 (55%), Gaps = 22/232 (9%)
Query: 141 KVDFHA---GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED 197
K++ HA + F+LF+ DI I ++ + ++ + PL+ V A +D+ + +D
Sbjct: 730 KINSHACAQSLDKFLLFARR--MDIRRISFDTED--LSDDVIPLADVRSAVALDWDSRDD 785
Query: 198 YIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN 257
++YW D+ TISR DGTG+E +++ T ++ +A+DW+ +YW+D +
Sbjct: 786 HVYWTDVSTDTISRAKWDGTGQEVVVD-------TSLESPAGLAIDWVTNKLYWTDAGTD 838
Query: 258 VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQTIL 316
IEVA G R VLI +D+P + V+P GY++W++ G P I RAG+D +Q I+
Sbjct: 839 RIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGASPKIERAGMDASSRQVII 898
Query: 317 AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG--GSKMQLKLSSNI 366
+ + P + +D ++R+YW +++++++G GSK ++ + S +
Sbjct: 899 SSNLTWP-NGLAIDYGSQRLYW----ADAGMKTIEFAGLDGSKRKVLIGSQL 945
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| 242018517 | 4603 | low-density lipoprotein receptor, putati | 0.944 | 0.077 | 0.364 | 3e-52 | |
| 321462894 | 4592 | hypothetical protein DAPPUDRAFT_307561 [ | 0.862 | 0.070 | 0.341 | 6e-50 | |
| 270010181 | 4576 | hypothetical protein TcasGA2_TC009548 [T | 0.875 | 0.072 | 0.332 | 2e-47 | |
| 363736013 | 4575 | PREDICTED: low-density lipoprotein recep | 0.777 | 0.064 | 0.355 | 4e-44 | |
| 432112067 | 4213 | Prolow-density lipoprotein receptor-rela | 0.856 | 0.076 | 0.332 | 7e-44 | |
| 444509407 | 4570 | Prolow-density lipoprotein receptor-rela | 0.859 | 0.070 | 0.336 | 8e-44 | |
| 403268915 | 4544 | PREDICTED: prolow-density lipoprotein re | 0.859 | 0.071 | 0.333 | 1e-43 | |
| 359065534 | 4544 | PREDICTED: LOW QUALITY PROTEIN: prolow-d | 0.859 | 0.071 | 0.333 | 1e-43 | |
| 358412256 | 4544 | PREDICTED: LOW QUALITY PROTEIN: prolow-d | 0.859 | 0.071 | 0.333 | 1e-43 | |
| 417515788 | 4544 | prolow-density lipoprotein receptor-rela | 0.859 | 0.071 | 0.333 | 1e-43 |
| >gi|242018517|ref|XP_002429721.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212514727|gb|EEB16983.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 212 bits (539), Expect = 3e-52, Method: Composition-based stats.
Identities = 145/398 (36%), Positives = 210/398 (52%), Gaps = 42/398 (10%)
Query: 4 LHVLPYTRNPSFGAV--------ASTLKPQSGPF------VYGVKTLSHSLHY---VNIE 46
LH++ +R F V S PQS F +Y V S S+ Y VN
Sbjct: 1582 LHIIEQSRMDGFDRVILVSQRDQPSLHSPQSLVFDLATDRLYWVNIESSSIQYYDFVNNS 1641
Query: 47 VKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLD-GSNSTVLRNNAGISDFIL 105
VK+ ++ +AA+ + V Y G I YSD D I ++ G N TVLRNN G + +
Sbjct: 1642 VKL--LILRGNAARPTSVVPYFGSIYYSDQEDQAIHKADMTTGGNDTVLRNNTG--NILS 1697
Query: 106 FSVNSGYDIMGIKYNKNESK-VQQVLGPLSKVSLAAK------VDFH-----AGISDFIL 153
+ G N+ + Q + P+SK K VD + GI +FI+
Sbjct: 1698 IRIYDPKLQTGTNACTNDKEPCQHLCLPISKTERVCKCATGYFVDVNNPTKCKGIEEFII 1757
Query: 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTH 213
+S+N +++ G+ ++ T+VLGPLS+VS+A + F ++ I+W D D G I++
Sbjct: 1758 YSIN--WEVKGLALPPGDN-YTKVLGPLSRVSMATNLGFLYDKELIFWGDSDQGKITKIK 1814
Query: 214 RDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI 273
RDGT RE +IE ET + T D T +A+DWIA+NIYW+DPK NVIEV+RL G R+V+I
Sbjct: 1815 RDGTNRETVIERYETMENTGSDFVTGLAIDWIAENIYWTDPKLNVIEVSRLNGSNRFVVI 1874
Query: 274 SGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI---IMPIKDITLD 330
S G+ +P +AVDP G LFW+ +GK P I + LDG + +L + I I DI LD
Sbjct: 1875 SDGISKPGGIAVDPVVGKLFWAVNGKSPRIECSALDGSNRMVLVNDTSGSISTINDIALD 1934
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKN 368
+ K +YWC S + E + Y GS+ L L ++ N
Sbjct: 1935 LETKHLYWCDSALDKI-ERVKYD-GSERTLLLDHSLDN 1970
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 204 bits (519), Expect = 6e-50, Method: Composition-based stats.
Identities = 122/357 (34%), Positives = 197/357 (55%), Gaps = 32/357 (8%)
Query: 30 VYGVKTLSHSLHYVNIEV-KVAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSINLD 87
+Y + S S+ Y N KV ++ S ++ ++ G IY +D +D I I+
Sbjct: 1641 LYWIDVESQSIQYYNFATQKVVQLSSNLTTLKLPTSLAVLGDQIYCADKDDAAIHVIDKT 1700
Query: 88 -GSNSTVLRNNAGISDFILFSVNSGYDI-MGIKYNKNESKVQQ---VLGPLSKVSLAAKV 142
G++ ++LR N I + + + YD + N+ SK Q + P++ K
Sbjct: 1701 VGTHDSILRTN--IDNVLALKI---YDPELQTGTNECMSKRNQCAHLCLPIATSKFICKC 1755
Query: 143 -----------DFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVD 191
+ + FIL+S+N + + N + T+VLGP+S++ +A +D
Sbjct: 1756 AAGYVTDPKNPNNCVSVDSFILYSLNGEIKGVALGETVNVTNHTEVLGPISRIQMANSID 1815
Query: 192 FHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
F A + YIYWVD DHG+I R RDGTGR+ I + +D +A+DWIA N+YW
Sbjct: 1816 FLAVDGYIYWVDSDHGSIVRIRRDGTGRQVIAQ--------GLDSVEGLAIDWIAGNMYW 1867
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
++PK +VIEVA + G ++YV+++G +D+P A+AVDP +G+LFW++ G+ P I R LDG
Sbjct: 1868 TNPKFDVIEVANVNGSFKYVVVAGDMDKPMAIAVDPVAGFLFWTDRGRTPRIERVRLDGS 1927
Query: 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKN 368
+ +L E I +TLD +NK+VYWC S + +ESMDY GG++ L ++++N
Sbjct: 1928 DRRVLVNESIFFTTGLTLDYQNKKVYWCDS-RLDTIESMDYDGGNRQVLLDKTHLEN 1983
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270010181|gb|EFA06629.1| hypothetical protein TcasGA2_TC009548 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 196 bits (498), Expect = 2e-47, Method: Composition-based stats.
Identities = 125/376 (33%), Positives = 195/376 (51%), Gaps = 46/376 (12%)
Query: 10 TRNPSFGAVASTLKPQSGPFVYGVKTLSHSL-----------------HYVNIEVKVAKV 52
T N +F ++ + V G+++ SHSL ++ N++ K
Sbjct: 1703 TTNETFIETSAMDGSKRTKIVTGLQSHSHSLCVDLHADKLYWVSEFEIYFSNLDGKDVTK 1762
Query: 53 VSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSG 111
+ +P + V+AA Y+ + Y+D +D I ++ + G N T+LRNN G S F L
Sbjct: 1763 LKLPHVS-VLAATVYQEHVYYADDDDHTIHIVDKMTGGNDTILRNNTG-SVFAL----RI 1816
Query: 112 YDIMGIK--YNKNESKVQQVLGPLSKVSLAAK--VDFHA---------GISDFILFSVNS 158
YD M K + S+ + P S + + +H G+ +FI +SVN
Sbjct: 1817 YDPMEQKGFHPCANSQCSDLCLPTSATTFRCRCATGYHTDPQNPNKCVGVEEFIFYSVN- 1875
Query: 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG 218
++I G+ N N T VLGP+S++S+A +DF A D ++W D D G+I+ RDGT
Sbjct: 1876 -WEIRGLALNGNNQ--TAVLGPISRISMATAIDFVAESDLLFWADSDRGSITSIKRDGTQ 1932
Query: 219 RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVD 278
R +IIE E D PVD T +AVDWIA N+YW D K VIEVARL G ++VL++ +
Sbjct: 1933 RRHIIEPTEAMDSVPVDWLTGLAVDWIAGNMYWCDSKRGVIEVARLDGSKQHVLLANEIG 1992
Query: 279 QPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYW 338
+P+A+AVDP G + W+ P + A +DG+ + +L + I D+TLD ++VY+
Sbjct: 1993 KPTAIAVDPARGVMVWAGG---PRLEIATMDGRNRNLLVNSSV-AISDVTLDSDQRKVYF 2048
Query: 339 CYSVGSNVLESMDYSG 354
C + +E + Y G
Sbjct: 2049 C-DTSRHTIEVIGYDG 2063
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|363736013|ref|XP_422146.3| PREDICTED: low-density lipoprotein receptor-related protein 1B [Gallus gallus] | Back alignment and taxonomy information |
|---|
Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats.
Identities = 116/326 (35%), Positives = 174/326 (53%), Gaps = 33/326 (10%)
Query: 57 DAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRN-NAGISDFILFSVNSGYDI 114
D + A ++ ++D N I + N DG N T+LRN +G+ ++ +
Sbjct: 1753 DLPKATALTIMDKKLWWADQNLAQIGTCNKRDGRNPTILRNKTSGVVHMKVYDKAAQQGS 1812
Query: 115 MGIKYNK----------NESK---VQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161
++N +ES V V L K +A K GI FI++SV+ G
Sbjct: 1813 NSCQFNNGGCSQLCLPTSESTRTCVCTVGYNLQKNRMACK-----GIESFIMYSVHEG-- 1865
Query: 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGREN 221
I GI + N+ + L P+S S A +DFHA D IYW D+ ISR+ RD T +E+
Sbjct: 1866 IRGISLDPNDK--MEALMPVSGTSFAVGIDFHAGNDTIYWTDMGFNKISRSKRDQTWKED 1923
Query: 222 IIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPS 281
++ + + IAVDWIA NIYW+D N+IEVARL G +RYV+IS G+DQP
Sbjct: 1924 VVT-------NGLGRVEGIAVDWIAGNIYWTDHGFNLIEVARLNGSFRYVIISQGLDQPR 1976
Query: 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341
++AV PE GYLFW+E G+IP I +A LDG ++ +L I+ I++D + ++YWC
Sbjct: 1977 SIAVHPEKGYLFWTEWGQIPCIGKAYLDGSEKVVLVSLGIVWPNGISIDYEENKLYWC-D 2035
Query: 342 VGSNVLESMDYSGGSKMQLKLS-SNI 366
++ +E +D G ++ LS SN+
Sbjct: 2036 ARTDKIERIDLESGGNREIVLSGSNV 2061
|
Source: Gallus gallus Species: Gallus gallus Genus: Gallus Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432112067|gb|ELK35095.1| Prolow-density lipoprotein receptor-related protein 1 [Myotis davidii] | Back alignment and taxonomy information |
|---|
Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats.
Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 29/352 (8%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1723 LYWISSGNHTINRCNLDGSDLEVIDAMRNQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1782
Query: 87 DGSNSTVLRNNAGISDFILF---SVNSGYDIMGIKYNKNESKVQQVLGPLSK-------- 135
DGS S VLRN+ + + S+ G+++ + N Q+ P S+
Sbjct: 1783 DGSGSVVLRNSTTLVMHMKVYDESIQLGHEVTN-PCSVNNGDCSQLCLPTSESTRSCMCT 1841
Query: 136 --VSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFH 193
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFH
Sbjct: 1842 AGYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFH 1897
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
A D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1898 AENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTD 1950
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 313
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1951 QGFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTER 2010
Query: 314 TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D + ++YWC ++ +E +D G ++ LSSN
Sbjct: 2011 VVLVNVSISWPNGISVDYQEGKLYWC-DARTDKIERIDLETGENREVVLSSN 2061
|
Source: Myotis davidii Species: Myotis davidii Genus: Myotis Family: Vespertilionidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|444509407|gb|ELV09244.1| Prolow-density lipoprotein receptor-related protein 1 [Tupaia chinensis] | Back alignment and taxonomy information |
|---|
Score = 184 bits (466), Expect = 8e-44, Method: Composition-based stats.
Identities = 118/351 (33%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSMPDA--AQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y V + +H+++ N++ +V+ + + A ++ ++D + + N
Sbjct: 1733 LYWVSSGNHTINRCNLDGSGLEVIDAMQSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1792
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ D G + N Q+ P S+
Sbjct: 1793 DGSGSVVLRNSTTLVMHMKVYDEGIQLDHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1852
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1853 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1908
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1909 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1961
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1962 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGSERV 2021
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2022 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2071
|
Source: Tupaia chinensis Species: Tupaia chinensis Genus: Tupaia Family: Tupaiidae Order: Scandentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|403268915|ref|XP_003926506.1| PREDICTED: prolow-density lipoprotein receptor-related protein 1 [Saimiri boliviensis boliviensis] | Back alignment and taxonomy information |
|---|
Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats.
Identities = 117/351 (33%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1756 LYWISSGNHTINRCNLDGSGLEVIDTMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHKGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2094
|
Source: Saimiri boliviensis boliviensis Species: Saimiri boliviensis Genus: Saimiri Family: Cebidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|359065534|ref|XP_003586126.1| PREDICTED: LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1 [Bos taurus] | Back alignment and taxonomy information |
|---|
Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats.
Identities = 117/351 (33%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1756 LYWISSKNHTINRCNLDGSELEVIDAMRNQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGSERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGEDREVVLSSN 2094
|
Source: Bos taurus Species: Bos taurus Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|358412256|ref|XP_003582266.1| PREDICTED: LOW QUALITY PROTEIN: prolow-density lipoprotein receptor-related protein 1 [Bos taurus] | Back alignment and taxonomy information |
|---|
Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats.
Identities = 117/351 (33%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1756 LYWISSKNHTINRCNLDGSELEVIDAMRNQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGSERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGEDREVVLSSN 2094
|
Source: Bos taurus Species: Bos taurus Genus: Bos Family: Bovidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|417515788|gb|JAA53703.1| prolow-density lipoprotein receptor-related protein 1 precursor [Sus scrofa] | Back alignment and taxonomy information |
|---|
Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats.
Identities = 117/351 (33%), Positives = 184/351 (52%), Gaps = 27/351 (7%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVVSM--PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ + A ++ ++D + + N
Sbjct: 1756 LYWISSKNHTINRCNLDGSGLEVIDAMWSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE+++ + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDVVT-------NGIGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYEDGKLYWC-DARTDKIERIDLETGEDREVVLSSN 2094
|
Source: Sus scrofa Species: Sus scrofa Genus: Sus Family: Suidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 377 | ||||||
| UNIPROTKB|E1C0W0 | 1122 | LRP1B "Uncharacterized protein | 0.854 | 0.286 | 0.337 | 1.2e-42 | |
| UNIPROTKB|E1BGJ0 | 4544 | LRP1 "Uncharacterized protein" | 0.859 | 0.071 | 0.344 | 4.6e-42 | |
| UNIPROTKB|F1NCT3 | 4576 | LRP1B "Uncharacterized protein | 0.854 | 0.070 | 0.337 | 9.6e-42 | |
| UNIPROTKB|E2R4Q1 | 4528 | LRP1 "Uncharacterized protein" | 0.859 | 0.071 | 0.341 | 2.5e-41 | |
| UNIPROTKB|J9P315 | 4544 | LRP1 "Uncharacterized protein" | 0.859 | 0.071 | 0.341 | 2.5e-41 | |
| UNIPROTKB|Q07954 | 4544 | LRP1 "Prolow-density lipoprote | 0.859 | 0.071 | 0.341 | 3.2e-41 | |
| UNIPROTKB|G3V928 | 4545 | Lrp1 "Protein Lrp1" [Rattus no | 0.859 | 0.071 | 0.341 | 8.6e-41 | |
| MGI|MGI:96828 | 4545 | Lrp1 "low density lipoprotein | 0.859 | 0.071 | 0.341 | 8.6e-41 | |
| ZFIN|ZDB-GENE-070912-401 | 4456 | lrp1bb "low density lipoprotei | 0.840 | 0.071 | 0.345 | 3.7e-40 | |
| UNIPROTKB|F1M443 | 1418 | F1M443 "Uncharacterized protei | 0.859 | 0.228 | 0.322 | 1.9e-39 |
| UNIPROTKB|E1C0W0 LRP1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 119/353 (33%), Positives = 191/353 (54%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMP-DAAQVVAAVFYKGRIIYSDANDGNIRSINL- 86
+Y + + + +++ N++ +++ SM D + A ++ ++D N I + N
Sbjct: 686 LYWISSGNGTINRCNLDGGNLEIIDSMKEDLPKATALTIMDKKLWWADQNLAQIGTCNKR 745
Query: 87 DGSNSTVLRNN-AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS--LAAKVD 143
DG N T+LRN +G+ ++ + ++N Q+ P S+ + V
Sbjct: 746 DGRNPTILRNKTSGVVHMKVYDKAAQQGSNSCQFNNGGCS--QLCLPTSESTRTCVCTVG 803
Query: 144 FHA--------GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA 195
++ GI FI++SV+ G I GI + N+ + L P+S S A +DFHA
Sbjct: 804 YNLQKNRMACKGIESFIMYSVHEG--IRGISLDPNDKM--EALMPVSGTSFAVGIDFHAG 859
Query: 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255
D IYW D+ ISR+ RD T +E++ V G + + IAVDWIA NIYW+D
Sbjct: 860 NDTIYWTDMGFNKISRSKRDQTWKEDV---VTNG----LGRVEGIAVDWIAGNIYWTDHG 912
Query: 256 ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI 315
N+IEVARL G +RYV+IS G+DQP ++AV PE GYLFW+E G+IP I +A LDG ++ +
Sbjct: 913 FNLIEVARLNGSFRYVIISQGLDQPRSIAVHPEKGYLFWTEWGQIPCIGKAYLDGSEKVV 972
Query: 316 LAQ-EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNI 366
L I+ P I++D + ++YWC ++ +E +D G ++ LS SN+
Sbjct: 973 LVSLGIVWP-NGISIDYEENKLYWC-DARTDKIERIDLESGGNREIVLSGSNV 1023
|
|
| UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 4.6e-42, P = 4.6e-42
Identities = 121/351 (34%), Positives = 189/351 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M + A+ G ++ ++D + + N
Sbjct: 1755 LYWISSKNHTINRCNLDGSELEVIDAMRNQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1814
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1815 DGSGSVVLRNSTTLVMHMKVYDESIQLDHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1874
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1875 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1930
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1931 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1983
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1984 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGSERV 2043
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2044 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGEDREVVLSSN 2093
|
|
| UNIPROTKB|F1NCT3 LRP1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 9.6e-42, P = 9.6e-42
Identities = 119/353 (33%), Positives = 191/353 (54%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMP-DAAQVVAAVFYKGRIIYSDANDGNIRSINL- 86
+Y + + + +++ N++ +++ SM D + A ++ ++D N I + N
Sbjct: 1724 LYWISSGNGTINRCNLDGGNLEIIDSMKEDLPKATALTIMDKKLWWADQNLAQIGTCNKR 1783
Query: 87 DGSNSTVLRNN-AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS--LAAKVD 143
DG N T+LRN +G+ ++ + ++N Q+ P S+ + V
Sbjct: 1784 DGRNPTILRNKTSGVVHMKVYDKAAQQGSNSCQFNNGGCS--QLCLPTSESTRTCVCTVG 1841
Query: 144 FHA--------GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA 195
++ GI FI++SV+ G I GI + N+ + L P+S S A +DFHA
Sbjct: 1842 YNLQKNRMACKGIESFIMYSVHEG--IRGISLDPNDKM--EALMPVSGTSFAVGIDFHAG 1897
Query: 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255
D IYW D+ ISR+ RD T +E++ V G + + IAVDWIA NIYW+D
Sbjct: 1898 NDTIYWTDMGFNKISRSKRDQTWKEDV---VTNG----LGRVEGIAVDWIAGNIYWTDHG 1950
Query: 256 ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI 315
N+IEVARL G +RYV+IS G+DQP ++AV PE GYLFW+E G+IP I +A LDG ++ +
Sbjct: 1951 FNLIEVARLNGSFRYVIISQGLDQPRSIAVHPEKGYLFWTEWGQIPCIGKAYLDGSEKVV 2010
Query: 316 LAQ-EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNI 366
L I+ P I++D + ++YWC ++ +E +D G ++ LS SN+
Sbjct: 2011 LVSLGIVWP-NGISIDYEENKLYWC-DARTDKIERIDLESGGNREIVLSGSNV 2061
|
|
| UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 120/351 (34%), Positives = 188/351 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M A+ G ++ ++D + + N
Sbjct: 1740 LYWISSGNHTINRCNLDGSELEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1799
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + + G + N Q+ P S+
Sbjct: 1800 DGSESVVLRNSTTLVMHMKVYDESIQLEHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1859
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1860 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1915
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1916 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1968
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1969 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2028
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2029 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2078
|
|
| UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 120/351 (34%), Positives = 188/351 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M A+ G ++ ++D + + N
Sbjct: 1756 LYWISSGNHTINRCNLDGSELEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + + G + N Q+ P S+
Sbjct: 1816 DGSESVVLRNSTTLVMHMKVYDESIQLEHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2094
|
|
| UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 457 (165.9 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 120/351 (34%), Positives = 188/351 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M A+ G ++ ++D + + +
Sbjct: 1756 LYWISSGNHTINRCNLDGSGLEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCSKA 1815
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + D G + N Q+ P S+
Sbjct: 1816 DGSGSVVLRNSTTLVMHMKVYDESIQLDHKGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1875
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1876 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1931
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1932 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1984
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G+ P I R+ LDG ++
Sbjct: 1985 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGQYPRIERSRLDGTERV 2044
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D ++ ++YWC ++ +E +D G ++ LSSN
Sbjct: 2045 VLVNVSISWPNGISVDYQDGKLYWC-DARTDKIERIDLETGENREVVLSSN 2094
|
|
| UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.6e-41, P = 8.6e-41
Identities = 120/351 (34%), Positives = 185/351 (52%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M A+ G ++ ++D + + N
Sbjct: 1757 LYWISSGNHTINRCNLDGSELEVIDTMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1816
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + + G + N Q+ P S+
Sbjct: 1817 DGSGSVVLRNSTTLVMHMKVYDESIQLEHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1876
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1877 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1932
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1933 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1985
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G P I R+ LDG ++
Sbjct: 1986 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGHYPRIERSRLDGTERV 2045
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D + ++YWC + +E +D G ++ LSSN
Sbjct: 2046 VLVNVSISWPNGISVDYQGGKLYWC-DARMDKIERIDLETGENREVVLSSN 2095
|
|
| MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.6e-41, P = 8.6e-41
Identities = 120/351 (34%), Positives = 185/351 (52%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDAAQVVAAVFYKG-RIIYSDANDGNIRSIN-L 86
+Y + + +H+++ N++ +V+ +M A+ G ++ ++D + + N
Sbjct: 1757 LYWISSGNHTINRCNLDGSELEVIDTMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKA 1816
Query: 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV-------- 136
DGS S VLRN+ + ++ + + G + N Q+ P S+
Sbjct: 1817 DGSGSVVLRNSTTLVMHMKVYDESIQLEHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTA 1876
Query: 137 --SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
SL + G+ F+L+SV+ G I GI + N+ + L P+S SLA +DFHA
Sbjct: 1877 GYSLRSGQQACEGVGSFLLYSVHEG--IRGIPLDPNDK--SDALVPVSGTSLAVGIDFHA 1932
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYWVD+ TISR RD T RE++ V G + + IAVDWIA NIYW+D
Sbjct: 1933 ENDTIYWVDMGLSTISRAKRDQTWREDV---VTNG----IGRVEGIAVDWIAGNIYWTDQ 1985
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314
+VIEVARL G +RYV+IS G+D+P A+ V PE GYLFW+E G P I R+ LDG ++
Sbjct: 1986 GFDVIEVARLNGSFRYVVISQGLDKPRAITVHPEKGYLFWTEWGHYPRIERSRLDGTERV 2045
Query: 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+L I I++D + ++YWC + +E +D G ++ LSSN
Sbjct: 2046 VLVNVSISWPNGISVDYQGGKLYWC-DARMDKIERIDLETGENREVVLSSN 2095
|
|
| ZFIN|ZDB-GENE-070912-401 lrp1bb "low density lipoprotein receptor-related protein 1Bb" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 3.7e-40, P = 3.7e-40
Identities = 122/353 (34%), Positives = 188/353 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMP-DAAQVVAAVFYKGRIIYSDANDGNIRSI-NL 86
+Y + + + +++ N++ +V+ SM D + A G++ ++D + + ++
Sbjct: 1634 MYWISSANGTINRCNLDGSGFEVIESMKRDLTKATALAVMGGKLWWADDDLAQLGTVAKR 1693
Query: 87 DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNK----NESKVQQVLGPLSKVS--LAA 140
DG N VLRN S + V YD G K N Q+ P S+ + A
Sbjct: 1694 DGRNPVVLRNKT--SGLVHMKV---YDRDGQKGRNACQLNNGGCSQLCLPTSENTRTCAC 1748
Query: 141 KVDFHA--------GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDF 192
+ ++ G++ F+++S + G I GI + N+ T+ L P+S A VDF
Sbjct: 1749 TIGYNLRNDRLSCEGLNSFLMYSFHEG--IRGIALDPNDH--TETLMPISGTLFAVGVDF 1804
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252
HA D +YW D+ ISR RD T RE+II TG +++ IAVDWIA N+YW+
Sbjct: 1805 HAGNDTVYWTDMGLNRISRAKRDQTWREDIIT---TG----INRVEGIAVDWIAGNLYWT 1857
Query: 253 DPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312
D N+IE+ARL G YR V+IS G+DQP A+AV P+ GYLFW+E GK P I RA LDG
Sbjct: 1858 DHGLNLIEIARLNGLYRSVVISEGLDQPRAIAVHPQRGYLFWTEWGKNPCIGRARLDGSD 1917
Query: 313 Q-TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSS 364
Q T+++ I P IT+D + R+YWC ++ +E ++ G ++ LS+
Sbjct: 1918 QVTLVSSGIAWP-NGITIDYEENRLYWC-DARTDKIERINLETGEGREIVLSA 1968
|
|
| UNIPROTKB|F1M443 F1M443 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 1.9e-39, P = 1.9e-39
Identities = 114/354 (32%), Positives = 190/354 (53%)
Query: 30 VYGVKTLSHSLHYVNIEVKVAKVV-SMPDA-AQVVAAVFYKGRIIYSDANDGNIRSINL- 86
+Y + + + +++ N++ +V+ SM + + A ++ ++D N + + N
Sbjct: 886 LYWISSGNGTINRCNLDGGNLEVIESMKEELTKATALTIMDKKLWWADQNLAQLGTCNKR 945
Query: 87 DGSNSTVLRNN-AGISDFILFSVNSGYDIMGIKYNK-NESKVQQVLGPLSKVSLAAK--V 142
DG N ++LRN +G+ ++ + + + N Q+ P S+ + V
Sbjct: 946 DGRNPSILRNKTSGVVHMKVYDKEAQQEFSSSNSCQVNNGGCSQLCLPTSETTRTCMCTV 1005
Query: 143 DFHA--------GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA 194
++ G+ F+++SV+ G I GI + KV ++ P+S + A +DFHA
Sbjct: 1006 GYYLQKNRMSCQGVESFLMYSVHEG--IRGISLEPRD-KVDALM-PISGAAFAVGIDFHA 1061
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
D IYW D+ ISR RD T +E+I V G + + IA+DWIA NIYW+D
Sbjct: 1062 ENDTIYWTDMGLNKISRAKRDQTWKEDI---VTNG----LGRVEGIAIDWIAGNIYWTDH 1114
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQ 313
N+IEVARL G +RYV+IS G+DQP ++AV PE G+LFW+E G++P I +A LDG +K
Sbjct: 1115 GFNLIEVARLNGSFRYVIISQGLDQPRSIAVHPEKGFLFWTEWGQVPCIGKARLDGSEKV 1174
Query: 314 TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNI 366
I++ I P I++D + ++YWC S+ +E +D G ++ LS SN+
Sbjct: 1175 MIVSMGITWP-NGISIDYEENKLYWC-DARSDKIERIDLDTGGNREVLLSGSNV 1226
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 377 | |||
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-07 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-06 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 7e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 0.001 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-07
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYR 269
+AVDWI +YW+D +VIEVA L G R
Sbjct: 14 LAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 270 YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
L+S G+ P+ LAVD G L+W++ G +I A LDG
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGT 41
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-05
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 247 QNIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287
+YW+D I VA L G R L S + P+ +AVDP
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR 219
S + + E +YW D I + DGT R
Sbjct: 6 SGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1215|consensus | 877 | 99.97 | ||
| KOG1214|consensus | 1289 | 99.97 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.9 | |
| KOG1215|consensus | 877 | 99.84 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.76 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.72 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.63 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.43 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.36 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.36 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.35 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.3 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.3 | |
| KOG4659|consensus | 1899 | 99.27 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| KOG4659|consensus | 1899 | 99.21 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.21 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.19 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.15 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.08 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 99.05 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.98 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.98 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.87 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.86 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.83 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.81 | |
| KOG1520|consensus | 376 | 98.76 | ||
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.75 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.73 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.66 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.6 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.51 | |
| KOG1520|consensus | 376 | 98.51 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.47 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.46 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.45 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.42 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.39 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.38 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.35 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.34 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.26 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.23 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.2 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.18 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.16 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.13 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.1 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.08 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.06 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.03 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.97 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.96 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.88 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.79 | |
| KOG4499|consensus | 310 | 97.78 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.71 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.62 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 97.48 | |
| KOG4499|consensus | 310 | 97.46 | ||
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.41 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.4 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.27 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.27 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.19 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.15 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.1 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.09 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.88 | |
| KOG1446|consensus | 311 | 96.73 | ||
| KOG0291|consensus | 893 | 96.64 | ||
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.54 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.39 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.36 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.22 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.17 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.95 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.84 | |
| KOG0291|consensus | 893 | 95.64 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.63 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.6 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 94.83 | |
| KOG0285|consensus | 460 | 94.82 | ||
| KOG0268|consensus | 433 | 93.91 | ||
| KOG1036|consensus | 323 | 93.83 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.68 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 93.59 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 93.5 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.29 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.27 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.19 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.74 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 92.51 | |
| KOG0310|consensus | 487 | 92.5 | ||
| PTZ00421 | 493 | coronin; Provisional | 92.44 | |
| KOG0315|consensus | 311 | 91.97 | ||
| KOG0279|consensus | 315 | 91.74 | ||
| KOG0278|consensus | 334 | 91.35 | ||
| KOG0315|consensus | 311 | 91.31 | ||
| KOG0289|consensus | 506 | 91.18 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 90.82 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.5 | |
| KOG0268|consensus | 433 | 90.0 | ||
| KOG0285|consensus | 460 | 89.84 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 89.38 | |
| KOG0272|consensus | 459 | 88.54 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 88.4 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 88.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.21 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 87.38 | |
| KOG0641|consensus | 350 | 86.98 | ||
| KOG0308|consensus | 735 | 86.09 | ||
| KOG1274|consensus | 933 | 86.08 | ||
| KOG0318|consensus | 603 | 85.6 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 85.48 | |
| KOG1274|consensus | 933 | 85.18 | ||
| KOG0266|consensus | 456 | 84.72 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 83.88 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 83.62 | |
| KOG0310|consensus | 487 | 83.45 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 82.69 | |
| KOG4649|consensus | 354 | 82.58 | ||
| KOG0286|consensus | 343 | 82.56 | ||
| KOG0318|consensus | 603 | 81.63 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 80.56 | |
| KOG4649|consensus | 354 | 80.43 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=292.92 Aligned_cols=212 Identities=28% Similarity=0.453 Sum_probs=191.0
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
..+|+++++.. |..+.+++...+++.....+ -..+-++|||||.++.+|||+|....+|.|+.++|.+.++++.
T Consensus 990 gt~LL~aqg~~--I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n--- 1064 (1289)
T KOG1214|consen 990 GTFLLYAQGQQ--IGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN--- 1064 (1289)
T ss_pred cceEEEeccce--EEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeec---
Confidence 46999999988 99999999876442222111 1234589999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEE
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARA 306 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~ 306 (377)
.++..|+||||||+.+|+||||+...+|+++.|||+++++|+.++|-+||+|++|+.+|.||||||. ++++|++.
T Consensus 1065 ----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets 1140 (1289)
T KOG1214|consen 1065 ----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETS 1140 (1289)
T ss_pred ----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceee
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 48999999
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
+|||+++++|+++++.-|+||++|++.+.|.|+|+ +.++++.+..+|..||++.. ++.-||+.
T Consensus 1141 ~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDA-Gt~rleC~~p~g~gRR~i~~--~LqYPF~i 1203 (1289)
T KOG1214|consen 1141 SMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDA-GTKRLECTLPDGTGRRVIQN--NLQYPFSI 1203 (1289)
T ss_pred ccCCccceEEeecccCCCCCceeCcccceeeEEec-CCcceeEecCCCCcchhhhh--cccCceee
Confidence 99999999999999999999999999999999999 99999999999999998864 45555553
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=270.96 Aligned_cols=319 Identities=24% Similarity=0.394 Sum_probs=262.2
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
++.|.|.+.+.-.+.+|| ..++++. .+ |. ...+.++ +|+++.+..+.+.. ..+....
T Consensus 283 ~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 341 (877)
T KOG1215|consen 283 LDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-IL-LSKLCHG----------YWTDGLNECAERVLKCSHKCPD 341 (877)
T ss_pred cCCCCcccccccccceee---------eeecccCCce-ee-ecccCcc----------ccccccccchhhcccccCCCCc
Confidence 346888888888888888 6777887 66 53 2333333 58888887777776 5555444
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCC-cCCCCCCceeccccC-CCccc---cCCcC----CCc---CCCcEEEEEeCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPL-SKVSL---AAKVD----FHA---GISDFILFSVNSG 159 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~-C~~~~g~Cs~~C~~~-~~~~~---~~G~~----~C~---~~~~~l~~s~~~~ 159 (377)
+...... ..+...+..... ...+ |...+|+|+|+|++. ++.+. +.||. .|. ....+++++.+..
T Consensus 342 ~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ 418 (877)
T KOG1215|consen 342 VSVGPRCDCMGAKVLPLGAR---TDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHD 418 (877)
T ss_pred cccCCcccCCccceeccccc---ccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCcc
Confidence 4333333 333333333322 2556 999999999999954 66666 78887 554 3678999999998
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ 239 (377)
|+++.++... ...|+.....+.++++|..++.+||+|.....|.+...++.....+.. .+.-.|.+
T Consensus 419 --ir~~~~~~~~-----~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~-------~g~~~~~~ 484 (877)
T KOG1215|consen 419 --IRRISLDCSD-----VSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCG-------DGLCIPEG 484 (877)
T ss_pred --ceecccCCCc-----ceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEec-------cCccccCc
Confidence 9999998762 456777778899999999999999999999999999999987666665 67888999
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~ 319 (377)
||+||+.+++||+|.....|.+.+++|..+.+++...+..|+.+++||..|++||+||+..++|.|+.+||..+..++..
T Consensus 485 lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~ 564 (877)
T KOG1215|consen 485 LAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN 564 (877)
T ss_pred EEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC
Confidence 99999999999999999999999999999999999888999999999999999999998667999999999999999998
Q ss_pred CCCCceEEEEeCCCCEEEEEEeCCCC-eEEEEEccCCceEEEEecCCCCCccccc
Q psy5792 320 IIMPIKDITLDRKNKRVYWCYSVGSN-VLESMDYSGGSKMQLKLSSNIKNALLDR 373 (377)
Q Consensus 320 ~~~~P~glalD~~~~~LYw~d~~~~~-~i~~~~~~G~~~~~~~~~~~~~~p~~~~ 373 (377)
++.+|+||++|...+++||+|. ... .|++++++|.+++ +......+|||+..
T Consensus 565 ~~~~p~glt~d~~~~~~yw~d~-~~~~~i~~~~~~g~~r~-~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 565 GILWPNGLTIDYETDRLYWADA-KLDYTIESANMDGQNRR-VVDSEDLPHPFGLS 617 (877)
T ss_pred CccCCCcceEEeecceeEEEcc-cCCcceeeeecCCCceE-EeccccCCCceEEE
Confidence 8899999999999999999999 887 8999999999888 66678899998764
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=244.37 Aligned_cols=234 Identities=21% Similarity=0.338 Sum_probs=199.4
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc-EEE-----EEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCC
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK-VAK-----VVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNA 98 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~-~~~-----i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~ 98 (377)
+.+| ..+..++|.+..++|+ .+. +++ -....|.||++ .+.+|||||+..++|.+..+.|+..+.+.
T Consensus 990 gt~L--L~aqg~~I~~lplng~~~~K~~ak~~l~-~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~--- 1063 (1289)
T KOG1214|consen 990 GTFL--LYAQGQQIGYLPLNGTRLQKDAAKTLLS-LPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV--- 1063 (1289)
T ss_pred cceE--EEeccceEEEeecCcchhchhhhhceEe-cccceeeeeecccccceEEEeecCCCccccccccCCCCceee---
Confidence 3466 4457789999999999 443 121 23456899999 89999999998888887776565543321
Q ss_pred CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 99 GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 99 ~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
T Consensus 1064 -------------------------------------------------------------------------------- 1063 (1289)
T KOG1214|consen 1064 -------------------------------------------------------------------------------- 1063 (1289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--
Q psy5792 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-- 256 (377)
Q Consensus 179 ~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-- 256 (377)
-.++..|.|||+|+....|||+|....+|-++.+||+.+++++. +++-+|++|++|.+.++|||||+++
T Consensus 1064 --n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~-------tdLVNPR~iv~D~~rgnLYwtDWnRen 1134 (1289)
T KOG1214|consen 1064 --NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY-------TDLVNPRAIVVDPIRGNLYWTDWNREN 1134 (1289)
T ss_pred --cccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe-------ecccCcceEEeecccCceeeccccccC
Confidence 12345688999999999999999999999999999999999998 8999999999999999999999874
Q ss_pred CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
.+|++.+|||+++++++..++.-|.||.+||....|.|.|.| +.+++....+|..++++.+. |+.|.+|+-+ .+.+
T Consensus 1135 PkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG-t~rleC~~p~g~gRR~i~~~-LqYPF~itsy--~~~f 1210 (1289)
T KOG1214|consen 1135 PKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG-TKRLECTLPDGTGRRVIQNN-LQYPFSITSY--ADHF 1210 (1289)
T ss_pred CcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC-CcceeEecCCCCcchhhhhc-ccCceeeeec--cccc
Confidence 699999999999999999999999999999999999999998 79999999999999998876 9999999986 4569
Q ss_pred EEEEeCCCCeEEEEEccCCceEEE
Q psy5792 337 YWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 337 Yw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
||+|+ +.+.|.++++.++.-+..
T Consensus 1211 Y~TDW-k~n~vvsv~~~~~~~td~ 1233 (1289)
T KOG1214|consen 1211 YHTDW-KRNGVVSVNKHSGQFTDE 1233 (1289)
T ss_pred eeecc-ccCceEEeeccccccccc
Confidence 99999 999999999987754433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-21 Score=203.45 Aligned_cols=269 Identities=14% Similarity=0.163 Sum_probs=195.6
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC------------CCCCceEEEEEE--CCeEEEEcCCCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM------------PDAAQVVAAVFY--KGRIIYSDANDG 79 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~------------~~~~~p~~lav~--~~~ly~td~~~~ 79 (377)
+..|.|+++|..+++||++|+..++|.+++++|. ..++... ..+..|.||++. ++.|||+|..++
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999999 6666421 124679999994 567999999999
Q ss_pred ceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 80 NIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 80 ~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
.|++++..+...+++... +
T Consensus 647 ~Ir~id~~~~~V~tlag~-G------------------------------------------------------------ 665 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGN-G------------------------------------------------------------ 665 (1057)
T ss_pred eEEEEecCCCEEEEEecc-C------------------------------------------------------------
Confidence 999999544344333210 0
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc-------CCCC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET-------GDPT 232 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~-------~~~~ 232 (377)
....+..+... .....+..|.++++|+.++.||++|..+++|++++..+.....+...... ....
T Consensus 666 --~~g~~~~gg~~------~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 666 --TKGSDYQGGKK------GTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTST 737 (1057)
T ss_pred --cccCCCCCChh------hhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccc
Confidence 00001111100 00012456889999998899999999999999999865443333210000 0012
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee---------------------CCCCCceeEEEcCCCCe
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS---------------------GGVDQPSALAVDPESGY 291 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~---------------------~~~~~P~~iavdp~~g~ 291 (377)
.+..|.||++++.++.||++|..+++|.+.++++.....+.. ..+..|.++++|+ +|.
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~ 816 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ 816 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence 356799999998778899999999999999998644332221 1255799999997 678
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEec-------------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQTILAQE-------------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~~l~~~-------------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
||++|++ +++|.+.+.++.....+... .+..|.||++|. +++||++|. .+++|..++++.+.
T Consensus 817 LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt-~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 817 IYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADT-NNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECC-CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEEC-CCCEEEEEECCCCc
Confidence 9999986 79999999987665554432 256899999995 678999999 99999999998653
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=191.32 Aligned_cols=304 Identities=19% Similarity=0.253 Sum_probs=235.9
Q ss_pred CceeEeeccccCCC------------------CcCCccccccCCCCeEEEEeCCCC-cEEEEEcCCc-EEEEEeCCCCCc
Q psy5792 1 MGYLHVLPYTRNPS------------------FGAVASTLKPQSGPFVYGVKTLSH-SLHYVNIEVK-VAKVVSMPDAAQ 60 (377)
Q Consensus 1 ~~~~~~~~~~~~~~------------------~~~~~~~~~d~~~~~ly~~d~~~~-~I~~~~~dG~-~~~i~~~~~~~~ 60 (377)
.|++||.+|-..|- +..|+|+++|..+.++||+|.... .|.+++.+|+ ++ +.....+.+
T Consensus 534 ~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~~~~~~~ 612 (877)
T KOG1215|consen 534 KGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVDSEDLPH 612 (877)
T ss_pred cCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-EeccccCCC
Confidence 48899999987442 258999999999999999999998 8999999999 76 333478899
Q ss_pred eEEEEEECCeEEEEcCCCCceEEEc-CCCCc-eEEEecCCCceeEEee-ecCCCCcccCCC-cCCCCCCceeccccCCCc
Q psy5792 61 VVAAVFYKGRIIYSDANDGNIRSIN-LDGSN-STVLRNNAGISDFILF-SVNSGYDIMGIK-YNKNESKVQQVLGPLSKV 136 (377)
Q Consensus 61 p~~lav~~~~ly~td~~~~~I~~~~-~~g~~-~~~~~~~~~p~~i~v~-~~~~~~~~~~~~-C~~~~g~Cs~~C~~~~~~ 136 (377)
|++++++++++||+|+..+.+.+.. ..+.. +.+......+..+..+ +...+ +.+.| |..++++|+|+|++.|..
T Consensus 613 p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~n~C~~~n~~c~~KOG~~p~~ 690 (877)
T KOG1215|consen 613 PFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR--PTGVNPCESSNGGCSQLCLPRPQG 690 (877)
T ss_pred ceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC--CCCCCcccccCCCCCeeeecCCCC
Confidence 9999999999999999999888887 55544 2233222237777666 44444 35888 999999999999999987
Q ss_pred cc---cCCcC------CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC
Q psy5792 137 SL---AAKVD------FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG 207 (377)
Q Consensus 137 ~~---~~G~~------~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~ 207 (377)
.. +.|+. +|.....++.++.... +..+..+.... .....+.. +...+..+|++...+
T Consensus 691 ~~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~ 756 (877)
T KOG1215|consen 691 STCACPEGYRLSPDGKSCSSPEGYLLITSRTG--IPCISLDSELS--PDQPLEDG----------DTIDRLEYWTDVRVG 756 (877)
T ss_pred CeeeCCCCCeecCCCCeecCcccccccccccc--cceeecCcccC--CCcccCCC----------cccccceecccccce
Confidence 54 77876 7888778888888887 88888776543 11111111 566889999987777
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC------eEEEEeeCCCCCce
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ------YRYVLISGGVDQPS 281 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~------~~~~l~~~~~~~P~ 281 (377)
...+...++.....++. .....+.++++++..+.|||+....+.|.+..+++. ....+.......|+
T Consensus 757 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (877)
T KOG1215|consen 757 VAAVSSQNCAPGYDLVG-------EGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPR 829 (877)
T ss_pred eeEEEecCCCCcccccc-------ccCCCCCCceeehhhcceEEEeecccEEEEEEEeeecccccccccccccCCCCCCc
Confidence 66666666544333444 567789999999999999999999999999988884 12233334577899
Q ss_pred eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE
Q psy5792 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 282 ~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla 328 (377)
.+.+.|....++|+++...+.|.+..++++....++...+..|.+++
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (877)
T KOG1215|consen 830 TTGVEPEKSLLFWTNWEPGPKIPRSALDGSERLVLFKSLLSCPNALA 876 (877)
T ss_pred ceeeccccceeccCCccccceeeecccccccccceeccCCCCccCCC
Confidence 99999999999999974468999999999999888887778888776
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=138.06 Aligned_cols=222 Identities=20% Similarity=0.231 Sum_probs=163.8
Q ss_pred eEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 61 VVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 61 p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
|.|.++. ++.|||+|...+.|.+++.++....++... .|.|+++..++.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~~~G~~~~~~~g---------------------------- 52 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-GPNGMAFDRPDG---------------------------- 52 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-SEEEEEEECTTS----------------------------
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-CCceEEEEccCC----------------------------
Confidence 5678885 799999999999999999666555554322 288887753432
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC----CCCceEEEEEECCCCEEEEEEcCC--------
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS----KVSLAAKVDFHAAEDYIYWVDIDH-------- 206 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~----~~~~~~~l~~d~~~~~ly~sd~~~-------- 206 (377)
.+++++... +..++...... ..+.... ....|-.+++|+ ++.||+++...
T Consensus 53 ------------~l~v~~~~~--~~~~d~~~g~~---~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 53 ------------RLYVADSGG--IAVVDPDTGKV---TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp ------------EEEEEETTC--EEEEETTTTEE---EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGS
T ss_pred ------------EEEEEEcCc--eEEEecCCCcE---EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccc
Confidence 478888777 77777665533 2333321 456789999999 57799998754
Q ss_pred CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC--C---eEEEEeeCCC--CC
Q psy5792 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG--Q---YRYVLISGGV--DQ 279 (377)
Q Consensus 207 ~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--~---~~~~l~~~~~--~~ 279 (377)
++|++++.+| ..+.+.. ++..|.||++++.++.||++|...++|.+++++. . .++++..... ..
T Consensus 115 g~v~~~~~~~-~~~~~~~--------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (246)
T PF08450_consen 115 GSVYRIDPDG-KVTVVAD--------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY 185 (246)
T ss_dssp EEEEEEETTS-EEEEEEE--------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE
T ss_pred cceEEECCCC-eEEEEec--------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC
Confidence 5799999994 3444443 6888999999998889999999999999999963 2 2445544322 25
Q ss_pred ceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe-CCCCEEEEEEe
Q psy5792 280 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD-RKNKRVYWCYS 341 (377)
Q Consensus 280 P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD-~~~~~LYw~d~ 341 (377)
|.|+++|. .|.||++.++ ..+|.+.+.+|+-...+... ..+|+.+++- ...++||++.+
T Consensus 186 pDG~~vD~-~G~l~va~~~-~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 186 PDGLAVDS-DGNLWVADWG-GGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEBT-TS-EEEEEET-TTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCcceEcC-CCCEEEEEcC-CCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 99999997 8999999996 79999999998876666554 5799999993 45689999865
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-16 Score=165.29 Aligned_cols=231 Identities=13% Similarity=0.180 Sum_probs=166.5
Q ss_pred CCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 56 PDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 56 ~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
+.+..|.++++ .++.||++|..+++|++++.+|+....+... ++.|
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-g~~G------------------------------- 612 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-GEEG------------------------------- 612 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-CCcC-------------------------------
Confidence 45678889999 4689999999999999999877654333210 0000
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTH 213 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~ 213 (377)
. .+|. .....+..|.++++|..++.||++|..++.|++++
T Consensus 613 -------------------------------~-~dG~--------~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 613 -------------------------------L-RDGS--------FEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred -------------------------------C-CCCc--------hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 0 0111 00123567999999998889999999999999999
Q ss_pred cCCCCcEEEEecccc-----C----CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee----------
Q psy5792 214 RDGTGRENIIEYVET-----G----DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS---------- 274 (377)
Q Consensus 214 ~~G~~~~~i~~~~~~-----~----~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~---------- 274 (377)
+.+...+++...... . ....+..|.++++|+.+++||++|..+++|.+.+.......++..
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS 732 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence 876555555321000 0 001256799999998889999999999999999987655443321
Q ss_pred ----CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe---------------------cCCCCceEEEE
Q psy5792 275 ----GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ---------------------EIIMPIKDITL 329 (377)
Q Consensus 275 ----~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~---------------------~~~~~P~glal 329 (377)
..+..|.+|+++|..+.||++|.+ +++|.+.++++...+.+.. ..+..|.|+++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 125789999999988889999986 7899999987554443321 01567999999
Q ss_pred eCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 330 DRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|. ++.||++|. .+++|..++.+++...++.
T Consensus 812 d~-dG~LYVADs-~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 812 AK-DGQIYVADS-YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eC-CCcEEEEEC-CCCEEEEEECCCCeEEEEe
Confidence 95 577999999 9999999999876555443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=132.13 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=158.1
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
|.|.+.|..++.|||+|...++|+++++++. .+.+. ...|.|+++. ++.+|+++.. .+..++ .+|+...+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~----~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID----LPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----SSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe----cCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE
Confidence 5688889888999999999999999999999 65553 2339999995 8899999874 455558 55654444
Q ss_pred Eec-----CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--------
Q psy5792 94 LRN-----NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG-------- 159 (377)
Q Consensus 94 ~~~-----~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~-------- 159 (377)
+.. ... |.++++... ..+++++...
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~-----------------------------------------G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPD-----------------------------------------GNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TT-----------------------------------------S-EEEEEECCBCTTCGGS
T ss_pred eeccCCCcccCCCceEEEcCC-----------------------------------------CCEEEEecCCCccccccc
Confidence 332 112 666665222 1255554321
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-----cEEEEeccccCCCCCC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-----RENIIEYVETGDPTPV 234 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-----~~~i~~~~~~~~~~~~ 234 (377)
|.|.+++.++. .......+..|-||++++.++.||++|...++|++++++... ++++... ....
T Consensus 115 g~v~~~~~~~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~ 183 (246)
T PF08450_consen 115 GSVYRIDPDGK------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF-----PGGP 183 (246)
T ss_dssp EEEEEEETTSE------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------SSSS
T ss_pred cceEEECCCCe------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc-----CCCC
Confidence 45888888732 122235677899999999999999999999999999997322 3444330 0122
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEE-cCCCCeEEEEec
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV-DPESGYLFWSES 297 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav-dp~~g~lywtd~ 297 (377)
+.|.||++|. .++||+++...++|.+++++|+....+-. ...+|..+++ -+..+.||+|..
T Consensus 184 g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 184 GYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIEL-PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp CEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcC-CCCCEEEEEEECCCCCEEEEEeC
Confidence 3599999995 88999999999999999999987665544 3679999999 466799999963
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-12 Score=123.09 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=183.7
Q ss_pred CcEEEEEc--CCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC---CCceEEEc--CCCCceEEEec---CCC-ceeE
Q psy5792 38 HSLHYVNI--EVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN---DGNIRSIN--LDGSNSTVLRN---NAG-ISDF 103 (377)
Q Consensus 38 ~~I~~~~~--dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~---~~~I~~~~--~~g~~~~~~~~---~~~-p~~i 103 (377)
+.|+.+.+ +.. .+.+........|.-|++ .+++||.++.. .+.|..+. .+....+.+.. ... |+.+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 45555555 222 333221145778888999 88899999884 57777776 33122332221 111 5555
Q ss_pred EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE--EE--
Q psy5792 104 ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV--LG-- 179 (377)
Q Consensus 104 ~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~--~~-- 179 (377)
.+ +++ ..+|++++...|.+..++++..+. +... +.
T Consensus 93 ~~-~~~---------------------------------------g~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~ 131 (345)
T PF10282_consen 93 AV-DPD---------------------------------------GRFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRH 131 (345)
T ss_dssp EE-CTT---------------------------------------SSEEEEEETTTTEEEEEEECTTSE-EEEEEEEEES
T ss_pred EE-ecC---------------------------------------CCEEEEEEccCCeEEEEEccCCcc-cceeeeeccc
Confidence 44 222 136899998888899988876432 0111 11
Q ss_pred ----e---cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 180 ----P---LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 180 ----~---~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
| -....+|+.+.+++.+++||++|...++|+.++++... ...... . ....-..|+.|++++..+.+|
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~---~~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-I---KVPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-E---ECSTTSSEEEEEE-TTSSEEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-c---ccccCCCCcEEEEcCCcCEEE
Confidence 1 12456799999999999999999999999999997543 211111 0 002334699999999889999
Q ss_pred EEcCCCCEEEEEEcC--CCeEEEE--eeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-CeEEE---
Q psy5792 251 WSDPKENVIEVARLT--GQYRYVL--ISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQTIL--- 316 (377)
Q Consensus 251 wtd~~~~~I~~~~~~--g~~~~~l--~~~------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~~~l--- 316 (377)
+++...++|.+++++ ....+.+ +.. ....|.+|+++|...+||+++.+ ...|....+|.. +....
T Consensus 208 v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEE
T ss_pred EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEE
Confidence 999999999999988 2222111 111 12379999999999999999987 678888888543 22222
Q ss_pred EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc--CCceEEEEecCCCCCcc
Q psy5792 317 AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS--GGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 317 ~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~--G~~~~~~~~~~~~~~p~ 370 (377)
+...-..|.++++|+.+++||++.. ..+.|..++++ .+..+.+......+.|-
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~-~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQ-DSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEec-CCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 2222457999999999999999999 99999888775 34334343334566664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-12 Score=121.29 Aligned_cols=277 Identities=10% Similarity=0.084 Sum_probs=180.1
Q ss_pred CeEEEEeCCCCcEEEEEcC--CcEEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC--CCCceEE--EecCCC
Q psy5792 28 PFVYGVKTLSHSLHYVNIE--VKVAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL--DGSNSTV--LRNNAG 99 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~d--G~~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~--~g~~~~~--~~~~~~ 99 (377)
.++|++....+.|..++++ |+.+.+-.......|..|++ .+++||++....+.|..++. +|+...+ +.....
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4799999999999999985 44222211134567888888 56789999888888877763 3432111 111112
Q ss_pred ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEE
Q psy5792 100 ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLG 179 (377)
Q Consensus 100 p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~ 179 (377)
|.++.+ +++. .+++.+....+.|..++++..+.. ...+.
T Consensus 82 p~~i~~-~~~g---------------------------------------~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~ 120 (330)
T PRK11028 82 PTHIST-DHQG---------------------------------------RFLFSASYNANCVSVSPLDKDGIP-VAPIQ 120 (330)
T ss_pred ceEEEE-CCCC---------------------------------------CEEEEEEcCCCeEEEEEECCCCCC-CCcee
Confidence 555554 2322 257777655566888887632210 11122
Q ss_pred ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE-----EEEeccccCCCCCCCCcceEEEeccCCeEEEEcC
Q psy5792 180 PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE-----NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254 (377)
Q Consensus 180 ~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~-----~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~ 254 (377)
.+.....|.++++++.++++|+++...++|..++++..... .... . ..-..|+++++++.++.+|.++.
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-----~-~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-----T-VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-----c-CCCCCCceEEECCCCCEEEEEec
Confidence 22344568999999989999999999999999988642210 0011 0 11245999999998899999999
Q ss_pred CCCEEEEEEcCC--CeEEEEee-----C---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC--CCCeEEEEec-CC
Q psy5792 255 KENVIEVARLTG--QYRYVLIS-----G---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--GKKQTILAQE-II 321 (377)
Q Consensus 255 ~~~~I~~~~~~g--~~~~~l~~-----~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--G~~~~~l~~~-~~ 321 (377)
..++|.+.+++. ...+.+.. . +...|.+|+++|.+.+||.++.+ ...|...+++ +...+.+-.. .-
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-ASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-CCeEEEEEEeCCCCeEEEeEEEecc
Confidence 889999999863 12112111 1 11235579999999999999865 4677766664 3222222111 12
Q ss_pred CCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 322 MPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..|.++++++.+++||.+.. ..++|..+.++
T Consensus 274 ~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~ 304 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID 304 (330)
T ss_pred ccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence 47999999999999999998 88888887765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-11 Score=114.34 Aligned_cols=287 Identities=15% Similarity=0.073 Sum_probs=180.6
Q ss_pred CcCCccccccCCCCeEEEEeC---CCCcEEEEEc--C-CcEEEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---LSHSLHYVNI--E-VKVAKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---~~~~I~~~~~--d-G~~~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~ 85 (377)
...|.-+++|+.+++||.+.. ..+.|..+.. + |+.+.+-. ......|-.|++ .+.+||+++...+.|..++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 468999999999999999988 4788887655 4 45333321 135778999999 7889999999999988877
Q ss_pred --CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 86 --LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 86 --~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
.+|........ ....|- -.++.+| .+.-.|.+..+|.+ .++++++.....|+
T Consensus 116 l~~~g~l~~~~~~-~~~~g~-g~~~~rq-----------~~~h~H~v~~~pdg-------------~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 116 LDDDGSLGEVVQT-VRHEGS-GPNPDRQ-----------EGPHPHQVVFSPDG-------------RFVYVPDLGADRVY 169 (345)
T ss_dssp ECTTSEEEEEEEE-EESEEE-ESSTTTT-----------SSTCEEEEEE-TTS-------------SEEEEEETTTTEEE
T ss_pred ccCCcccceeeee-cccCCC-CCccccc-----------ccccceeEEECCCC-------------CEEEEEecCCCEEE
Confidence 44544333210 000000 0122233 12222333333322 46888886666799
Q ss_pred EEEcCCCCceeeE-EEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEecc-ccCCCCCCCCcce
Q psy5792 164 GIKYNKNESKVTQ-VLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYV-ETGDPTPVDQFTD 239 (377)
Q Consensus 164 ~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~-~~~~~~~~~~p~~ 239 (377)
.++++....++.. ....+.....|..++|++.+.++|+++...+.|..++++ ....+.+.... ......+...|.+
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 9999766421111 223456667899999999999999999999999988887 22222221100 0001122236999
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCC---eEE-EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-CCeE
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQ---YRY-VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQT 314 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~---~~~-~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~~~~ 314 (377)
|++.+.++.||+++...+.|.+++++.. ... ..+......|++++++|.+.+||+++.. ...|....+|. ++..
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcE
Confidence 9999999999999999999999999542 221 2233456779999999999999999975 56777776653 2332
Q ss_pred EEEe--cCCCCceEEE
Q psy5792 315 ILAQ--EIIMPIKDIT 328 (377)
Q Consensus 315 ~l~~--~~~~~P~gla 328 (377)
.... ..+..|..|.
T Consensus 329 ~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIV 344 (345)
T ss_dssp EEEEEEEESSSEEEEE
T ss_pred EEecccccCCCCEEEe
Confidence 2222 2356666554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-10 Score=111.22 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=171.8
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcC--CcEEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc--CCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE--VKVAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN--LDG 88 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d--G~~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~--~~g 88 (377)
.+.|..+++++.++.||++....+.|..++.+ |+.+.+-.......|.+|++ .+.+||.++...+.|..++ .+|
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 35799999999999999998888889877765 33332211133457899999 4668999998888888887 344
Q ss_pred CceEEEe---cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 89 SNSTVLR---NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 89 ~~~~~~~---~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
...+.+. ....|.++.+ +++. .++++++...+.|..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~p~g---------------------------------------~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANI-DPDN---------------------------------------RTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCceeeccCCCcccEeEe-CCCC---------------------------------------CEEEEeeCCCCEEEEE
Confidence 3322211 1112444433 3322 3677888776779999
Q ss_pred EcCCCCceee---EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC--CCcEEEEeccccCCCC---CCCCc
Q psy5792 166 KYNKNESKVT---QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG--TGRENIIEYVETGDPT---PVDQF 237 (377)
Q Consensus 166 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G--~~~~~i~~~~~~~~~~---~~~~p 237 (377)
+++.... +. ...........|..+++++.++++|+++...+.|..++++. ...+.+... ...+. ....|
T Consensus 154 d~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~ 230 (330)
T PRK11028 154 TLSDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL--DMMPADFSDTRWA 230 (330)
T ss_pred EECCCCc-ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE--ecCCCcCCCCccc
Confidence 8865321 00 01112233456889999999999999998889998888862 122222210 00011 11235
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEEee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-Ce
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQ 313 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~ 313 (377)
.+|++++.++.||.++...+.|.+++++ +...+.+-. .....|++++++|...+||.+..+ ...|....++.. +.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDGETGL 309 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-CCcEEEEEEcCCCCc
Confidence 5799999888999999888899988874 332221111 113579999999999999999975 466666665532 11
Q ss_pred EEEEec--CCCCceEEEE
Q psy5792 314 TILAQE--IIMPIKDITL 329 (377)
Q Consensus 314 ~~l~~~--~~~~P~glal 329 (377)
...+.. .-..|.++++
T Consensus 310 l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 310 LTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEccccccCCCceEEEE
Confidence 112121 1357888876
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-11 Score=113.48 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred eccccCCCCcCCccccccCCCCeEEEEeCC-----------C-CcEEEEEc---CCc--EEEEEeCCCCCceEEEEEECC
Q psy5792 7 LPYTRNPSFGAVASTLKPQSGPFVYGVKTL-----------S-HSLHYVNI---EVK--VAKVVSMPDAAQVVAAVFYKG 69 (377)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~~~~~ly~~d~~-----------~-~~I~~~~~---dG~--~~~i~~~~~~~~p~~lav~~~ 69 (377)
.=|...|-+..|.++++|.. ++||+++.. . ++|.++.. ||. ..++++ ..+..|.||++..+
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVG 82 (367)
T ss_pred EEEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecC
Confidence 34567788999999999986 689999852 2 38888754 566 333432 67889999999655
Q ss_pred eEEEEcCCCCceEEEc-CCCC-----ceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcC
Q psy5792 70 RIIYSDANDGNIRSIN-LDGS-----NSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVD 143 (377)
Q Consensus 70 ~ly~td~~~~~I~~~~-~~g~-----~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~ 143 (377)
.||+++. ..|.++. .+|. .++++......
T Consensus 83 GlyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~------------------------------------------- 117 (367)
T TIGR02604 83 GVYVATP--PDILFLRDKDGDDKADGEREVLLSGFGG------------------------------------------- 117 (367)
T ss_pred CEEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-------------------------------------------
Confidence 5999974 4688884 5442 12222211100
Q ss_pred CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------------------
Q psy5792 144 FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI------------------- 204 (377)
Q Consensus 144 ~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~------------------- 204 (377)
... .....+.++++++ +++||+++.
T Consensus 118 ------------------------~~~-----------~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 118 ------------------------QIN-----------NHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred ------------------------CCC-----------cccccccCceECC-CCCEEEecccCCCceeccCCCccCcccc
Confidence 000 0000112222222 223333222
Q ss_pred CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC--C----------C-----
Q psy5792 205 DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT--G----------Q----- 267 (377)
Q Consensus 205 ~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~--g----------~----- 267 (377)
..+.|+|++++|+..+.+. .++..|.|+++|+ .++||++|.......++..- | .
T Consensus 162 ~~g~i~r~~pdg~~~e~~a--------~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~ 232 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVA--------HGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHA 232 (367)
T ss_pred cCceEEEEecCCCeEEEEe--------cCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccc
Confidence 2368999999988776665 4788899999997 78999998765433322211 0 0
Q ss_pred ------eE---------E-----EEeeCCCCCceeEEEc-------CCCCeEEEEecCCCCeEEEEecC--CCCe----E
Q psy5792 268 ------YR---------Y-----VLISGGVDQPSALAVD-------PESGYLFWSESGKIPLIARAGLD--GKKQ----T 314 (377)
Q Consensus 268 ------~~---------~-----~l~~~~~~~P~~iavd-------p~~g~lywtd~g~~~~I~r~~ld--G~~~----~ 314 (377)
.. . .........|.|+++- +..|.+|++++. ..+|.+..++ |... .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~-~~~v~~~~l~~~g~~~~~~~~ 311 (367)
T TIGR02604 233 DRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAH-GQLIVRYSLEPKGAGFKGERP 311 (367)
T ss_pred cccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeecc-CCEEEEEEeecCCCccEeecC
Confidence 00 0 0000112368999998 457899999995 6899999886 3211 1
Q ss_pred EEEec-C-CCCceEEEEeCCCCEEEEEEe
Q psy5792 315 ILAQE-I-IMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 315 ~l~~~-~-~~~P~glalD~~~~~LYw~d~ 341 (377)
.++.. . ...|..+++++ .+.||++|+
T Consensus 312 ~~l~~~~~~~rp~dv~~~p-DG~Lyv~d~ 339 (367)
T TIGR02604 312 EFLRSNDTWFRPVNVTVGP-DGALYVSDW 339 (367)
T ss_pred ceEecCCCcccccceeECC-CCCEEEEEe
Confidence 22332 1 35899999985 588999996
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-09 Score=95.21 Aligned_cols=271 Identities=8% Similarity=0.002 Sum_probs=173.0
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCcee
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISD 102 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~ 102 (377)
+++|.+....+.|...|+++. ..++ .....|.++++ .+..+|.+....+.|..++ .+|+....+.....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~---~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF---PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE---ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 367888888999999998765 4444 33445788888 3446888888788899998 55554443332222333
Q ss_pred EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC
Q psy5792 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182 (377)
Q Consensus 103 i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~ 182 (377)
+.+ +++. ..++++....+.|+.+++..... +..+.
T Consensus 78 ~~~-~~~g---------------------------------------~~l~~~~~~~~~l~~~d~~~~~~-----~~~~~ 112 (300)
T TIGR03866 78 FAL-HPNG---------------------------------------KILYIANEDDNLVTVIDIETRKV-----LAEIP 112 (300)
T ss_pred EEE-CCCC---------------------------------------CEEEEEcCCCCeEEEEECCCCeE-----EeEee
Confidence 322 2221 24555554444688888765422 22222
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
....+.++++++.+..++.+......+..++.+......... .-..|..+++++.++.||++....++|...
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--------VDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--------cCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 223477889988777777666544455556665322211111 123588899998777888876667889999
Q ss_pred EcCCCeE-EEEeeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE
Q psy5792 263 RLTGQYR-YVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 263 ~~~g~~~-~~l~~~------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~ 335 (377)
++..... +.+-.. ....|.+++++|...++|++..+ ..+|...++........... -..|.++++.+.+++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-ANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKY 262 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-CCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCE
Confidence 9876533 222110 12357889999988888988653 46788887764333222222 256889999988899
Q ss_pred EEEEEeCCCCeEEEEEccCCce
Q psy5792 336 VYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
||.+.. ..+.|...+..++..
T Consensus 263 l~~~~~-~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 263 LLTTNG-VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEcC-CCCeEEEEECCCCcE
Confidence 998887 788999999987654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.3e-10 Score=99.54 Aligned_cols=210 Identities=11% Similarity=0.137 Sum_probs=127.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC--CCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL--DGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~--~g~~~ 91 (377)
.-++|++.++++++||-+......|...+++|. .+++- ..+..++-||++ .++.+.+++-..+.+..++. +++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 359999999999999999999999999999999 77763 466889999999 55666677767777777762 11111
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.. +. ..++.+....
T Consensus 101 ~~-------------------------------------------------------------~~-----~~~~~l~~~~ 114 (248)
T PF06977_consen 101 DR-------------------------------------------------------------AD-----VQKISLGFPN 114 (248)
T ss_dssp -E-------------------------------------------------------------EE-----EEEEE---S-
T ss_pred ch-------------------------------------------------------------hh-----ceEEeccccc
Confidence 00 00 2233332110
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEc--CCCCcEEEEeccccC-CCCCCCCcceEEEeccCC
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHR--DGTGRENIIEYVETG-DPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~--~G~~~~~i~~~~~~~-~~~~~~~p~~iavD~~~~ 247 (377)
.+.....|+++|+.++++|++... ...|+.++. .+........ .... ....+..|.+|++|+.++
T Consensus 115 ----------~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~S~l~~~p~t~ 183 (248)
T PF06977_consen 115 ----------KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QDLDDDKLFVRDLSGLSYDPRTG 183 (248)
T ss_dssp ------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HHHH-HT--SS---EEEEETTTT
T ss_pred ----------CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc-cccccccceeccccceEEcCCCC
Confidence 122347899999999999998643 346777776 2222222211 0100 112345699999999999
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeC--------CCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISG--------GVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~--------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
+||+......+|...+.+|+....+--. .+.+|.|||+|+ +|.||++.. ....+++
T Consensus 184 ~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE--pNlfy~f 247 (248)
T PF06977_consen 184 HLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE--PNLFYRF 247 (248)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET--TTEEEEE
T ss_pred eEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC--CceEEEe
Confidence 9999999999999999999876543221 367899999997 799999984 3444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-08 Score=93.76 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=164.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
..|.++++++.+..+|.+....+.|...++++. ....+ .....|..+++ .++.+|.+....+.|..++ .+++..
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 458899999988889999888899999998766 33322 23344666777 4557888887778899898 444333
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
..+.....|.++.+ +++. .+++++..+...+..++.....
T Consensus 109 ~~~~~~~~~~~~~~-~~dg---------------------------------------~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 109 AEIPVGVEPEGMAV-SPDG---------------------------------------KIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred eEeeCCCCcceEEE-CCCC---------------------------------------CEEEEEecCCCeEEEEeCCCCe
Confidence 33332222444443 2222 1344444332224455554332
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
. ... . .....+..+++++.++.||++....+.|..+++..... ..+... ..........|.++++++.++.+|
T Consensus 149 ~--~~~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 149 I--VDN-V--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred E--EEE-E--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-ccccccccCCccceEECCCCCEEE
Confidence 2 111 1 12235677888887888888766678888888864322 212110 000001122477899998788889
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
++....++|.+.+++.......+.. ...|.+++++|.+.+||.+.. ..+.|...+++......-+..+ ..|++|++-
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAALKVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcC-CCCeEEEEECCCCcEEEEEEcc-cccceeEeC
Confidence 9887778899998875443222222 346899999998889988864 3578999998876643333433 789999973
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-09 Score=102.04 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=181.9
Q ss_pred EEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEE-EecCCC-ceeEEe
Q psy5792 31 YGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTV-LRNNAG-ISDFIL 105 (377)
Q Consensus 31 y~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~-~~~~~~-p~~i~v 105 (377)
|+...... +..++..+. ....+ .....|.++++ .+.++|+++.....+..++......+. ...... |.++.+
T Consensus 5 ~~~~~~~~-~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v 81 (381)
T COG3391 5 KVMNTGAD-VSVINTGTNKVTAAI--SLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAV 81 (381)
T ss_pred ccccCCCc-eEEEeecccEEEEEe--ecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceee
Confidence 44444433 666676666 44444 44558888888 677999999877767777633222222 122212 667666
Q ss_pred eecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC
Q psy5792 106 FSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS 185 (377)
Q Consensus 106 ~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 185 (377)
..... .+++...+.+.|..++...... +.......
T Consensus 82 ~~~~~----------------------------------------~vyv~~~~~~~v~vid~~~~~~-----~~~~~vG~ 116 (381)
T COG3391 82 NPAGN----------------------------------------KVYVTTGDSNTVSVIDTATNTV-----LGSIPVGL 116 (381)
T ss_pred CCCCC----------------------------------------eEEEecCCCCeEEEEcCcccce-----eeEeeecc
Confidence 44433 2555554434488888554422 12222223
Q ss_pred ceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
.|.++++++.++++|+++.. ++.|..++........... .+ ..|.++++|+.+..+|.++...++|.+.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG-~~P~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VG-NTPTGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cC-CCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence 79999999999999999994 6889888887432211121 11 25899999998888999999999999999
Q ss_pred cCCCeEEE-----EeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEEE--EecCCCCceEEEEeCCCCE
Q psy5792 264 LTGQYRYV-----LISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTIL--AQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 264 ~~g~~~~~-----l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~l--~~~~~~~P~glalD~~~~~ 335 (377)
..+..... .+. ....|.+++++|...++|+++.++ ...+.+.+......... ..... +|.++++++.+..
T Consensus 189 ~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 189 TSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence 88775442 122 367899999999999999999752 15788888776554443 22335 8999999999999
Q ss_pred EEEEEeCCCCeEEEEEccCC
Q psy5792 336 VYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~G~ 355 (377)
+|.++. ..+.+..++....
T Consensus 267 ~yv~~~-~~~~V~vid~~~~ 285 (381)
T COG3391 267 AYVANS-QGGTVSVIDGATD 285 (381)
T ss_pred EEEEec-CCCeEEEEeCCCC
Confidence 999999 8899999888743
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-09 Score=100.75 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=188.6
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
+..|.++++++.+..+|+++...+.+..++..-. ..... ......|.++++ .+.++|+++...+.|..++ ..-..
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 4589999999999999999998888888887733 44433 233378999999 6778999999999999999 33333
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEEEcC
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGIKYN 168 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~~l~ 168 (377)
...+..+..|.++.+.... .++++++. ..+.+..++-.
T Consensus 109 ~~~~~vG~~P~~~~~~~~~----------------------------------------~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDG----------------------------------------KYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred eeEeeeccCCceEEECCCC----------------------------------------CEEEEEecccCCceEEEEeCC
Confidence 3333333347777763222 25777776 24457777665
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.... ... . .....|.++++++.++++|.++...+.|..++.++..... -. ..........|.++++++.+.+
T Consensus 149 t~~~--~~~-~--~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~ 220 (381)
T COG3391 149 TNKV--TAT-I--PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS--VGSLVGVGTGPAGIAVDPDGNR 220 (381)
T ss_pred CCeE--EEE-E--ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc--cccccccCCCCceEEECCCCCE
Confidence 5433 222 2 2223579999999999999999889999999977543321 10 0000123456999999998889
Q ss_pred EEEEcCCC--CEEEEEEcCCCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC---C
Q psy5792 249 IYWSDPKE--NVIEVARLTGQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI---I 321 (377)
Q Consensus 249 lYwtd~~~--~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~---~ 321 (377)
+|+++..+ +++.+.+......... ....+ .|.+++++|...++|+++.. ...+..++............. .
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~-~~~V~vid~~~~~v~~~~~~~~~~~ 298 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ-GGTVSVIDGATDRVVKTGPTGNEAL 298 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC-CCeEEEEeCCCCceeeeeccccccc
Confidence 99999987 6898888887654433 22345 89999999999999999864 577777776665554443331 2
Q ss_pred CCceEEEEeCCCCEEEEEE
Q psy5792 322 MPIKDITLDRKNKRVYWCY 340 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d 340 (377)
..|..+++-......|...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ 317 (381)
T COG3391 299 GEPVSIAISPLYDTNYVSV 317 (381)
T ss_pred ccceeccceeeccccccee
Confidence 2366676654444444433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=100.91 Aligned_cols=218 Identities=18% Similarity=0.250 Sum_probs=142.1
Q ss_pred ECCeEEEEcCCCCceEEEcC-CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 67 YKGRIIYSDANDGNIRSINL-DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
.++.|||+|...++|++.+. +|+. +++..... +.+..+ +..
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~-d~~----------------------------------- 77 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALI-DAG----------------------------------- 77 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceee-cCC-----------------------------------
Confidence 56679999999999999995 4544 33332212 222221 111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec---CCCCceEEEEEECCCCEEEEEEcC-----------CCcEE
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL---SKVSLAAKVDFHAAEDYIYWVDID-----------HGTIS 210 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~d~~~~~ly~sd~~-----------~~~I~ 210 (377)
-.+++..+. ++.++.+.... ...+... ....++-...+|+ .+.+|+++.. .++++
T Consensus 78 ------g~Lv~~~~g--~~~~~~~~~~~--~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 78 ------GRLIACEHG--VRLLDPDTGGK--ITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ------CeEEEEccc--cEEEeccCCce--eEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 144555555 66665532222 0111111 1234465667777 5899998876 24799
Q ss_pred EEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC---CC--eE--EEEeeCCCCCceeE
Q psy5792 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT---GQ--YR--YVLISGGVDQPSAL 283 (377)
Q Consensus 211 ~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~---g~--~~--~~l~~~~~~~P~~i 283 (377)
|++.+|.. +.++. ..+..|+|||+++.+..||++|...++|.+++++ |. .+ .+.....-..|-|+
T Consensus 147 r~~p~g~~-~~l~~-------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~ 218 (307)
T COG3386 147 RVDPDGGV-VRLLD-------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM 218 (307)
T ss_pred EEcCCCCE-EEeec-------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCce
Confidence 99986644 44444 4588899999999999999999999999999998 32 12 23333334679999
Q ss_pred EEcCCCCeEE-EEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC-CCCEEEEEEeCCC
Q psy5792 284 AVDPESGYLF-WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR-KNKRVYWCYSVGS 344 (377)
Q Consensus 284 avdp~~g~ly-wtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~-~~~~LYw~d~~~~ 344 (377)
++|. .|.|| .+.++ ..+|.+.+.+|.....+.-- ..+|..+++-- ..++||++.. ..
T Consensus 219 ~vDa-dG~lw~~a~~~-g~~v~~~~pdG~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~-~~ 277 (307)
T COG3386 219 AVDA-DGNLWVAAVWG-GGRVVRFNPDGKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSA-RS 277 (307)
T ss_pred EEeC-CCCEEEecccC-CceEEEECCCCcEEEEEECC-CCCCccceEeCCCcCEEEEEec-CC
Confidence 9995 88888 55553 46999999998766554443 35777777722 2489999987 54
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-10 Score=116.24 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=161.5
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+|..+|.-++ +-||+-|.+ .|+++..||+ .+.+-. ...-.|-+-||+ .++.||++|...++|+|+. ..++..
T Consensus 366 aPvala~a~D-GSl~VGDfN--yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~ 442 (1899)
T KOG4659|consen 366 APVALAYAPD-GSLIVGDFN--YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS 442 (1899)
T ss_pred ceeeEEEcCC-CcEEEccch--heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcccc
Confidence 8888888875 578888764 6999999999 443321 133446677888 8999999999999999998 555432
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
+. +.+ + |.....+ |. + .++. .+++ .
T Consensus 443 ~~---N~e---v-vaG~Ge~-------Cl-----------p---------------~des----CGDG----------a- 467 (1899)
T KOG4659|consen 443 RN---NYE---V-VAGDGEV-------CL-----------P---------------ADES----CGDG----------A- 467 (1899)
T ss_pred cc---Cee---E-EeccCcC-------cc-----------c---------------cccc----cCcc----------h-
Confidence 11 100 0 0011111 21 1 0000 1111 1
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-C------------CCCCCCcc
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-D------------PTPVDQFT 238 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~------------~~~~~~p~ 238 (377)
+..-+.+-.|.|+++|. .+.||++|. ..|++++.+|-- .+++. ..+. . .-.+.+|.
T Consensus 468 ------lA~dA~L~~PkGIa~dk-~g~lYfaD~--t~IR~iD~~giI-stlig-~~~~~~~p~~C~~~~kl~~~~leWPT 536 (1899)
T KOG4659|consen 468 ------LAQDAQLIFPKGIAFDK-MGNLYFADG--TRIRVIDTTGII-STLIG-TTPDQHPPRTCAQITKLVDLQLEWPT 536 (1899)
T ss_pred ------hcccceeccCCceeEcc-CCcEEEecc--cEEEEeccCceE-EEecc-CCCCccCccccccccchhheeeeccc
Confidence 11112334588999997 899999985 478888877632 22211 0000 0 01256799
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEe-------------------eCCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI-------------------SGGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~-------------------~~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
.|||||..+.||+.|.+ -|.+++.++.-+..+- ...+..|++||+-+ .|.||+++..
T Consensus 537 ~LaV~Pmdnsl~Vld~n--vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD- 612 (1899)
T KOG4659|consen 537 SLAVDPMDNSLLVLDTN--VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESD- 612 (1899)
T ss_pred ceeecCCCCeEEEeecc--eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEecc-
Confidence 99999999999999874 4777776665441110 01256789999996 8999999863
Q ss_pred CCeEEEE---ecCCCCeEEEE------------------------e-cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 300 IPLIARA---GLDGKKQTILA------------------------Q-EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 300 ~~~I~r~---~ldG~~~~~l~------------------------~-~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
..+|.|+ ..||+ ...+. . ..+..|..||+. ..+.+|++|. ++-+|.++.
T Consensus 613 ~rriNrvr~~~tdg~-i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVs-Pdg~v~IAD~-gN~rIr~Vs 689 (1899)
T KOG4659|consen 613 GRRINRVRKLSTDGT-ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVS-PDGDVIIADS-GNSRIRKVS 689 (1899)
T ss_pred chhhhheEEeccCce-EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEEC-CCCcEEEecC-Cchhhhhhh
Confidence 4555544 44542 11111 0 026779999997 5789999999 777776654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-07 Score=86.44 Aligned_cols=293 Identities=14% Similarity=0.177 Sum_probs=181.7
Q ss_pred eEEEEeCC---CCcEEEEEcCCc-----EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcC---CCCceEE
Q psy5792 29 FVYGVKTL---SHSLHYVNIEVK-----VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINL---DGSNSTV 93 (377)
Q Consensus 29 ~ly~~d~~---~~~I~~~~~dG~-----~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~---~g~~~~~ 93 (377)
.+|+.... ++.|+++++|+. ...++ .....|.=|++ .+.+||..... .+.|..+.. +|. .+.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ 80 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTF 80 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEE
Confidence 56666555 788999988854 22222 56778888888 45569998766 566665542 242 222
Q ss_pred EecCC----CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 94 LRNNA----GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 94 ~~~~~----~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
+.... .|+-+.+ +++ ..+++.++-+.|+|....+..
T Consensus 81 ln~~~~~g~~p~yvsv-d~~---------------------------------------g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 81 LNRQTLPGSPPCYVSV-DED---------------------------------------GRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred eeccccCCCCCeEEEE-CCC---------------------------------------CCEEEEEEccCceEEEEEccc
Confidence 22111 1233333 111 137899998888899988843
Q ss_pred CCc--eeeEEEEecC-------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceE
Q psy5792 170 NES--KVTQVLGPLS-------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 170 ~~~--~~~~~~~~~~-------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
.+. ...+.+.... ..+++....+++.+++|+..|....+|+..+++-...+.... .....-..|+-|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~----~~v~~G~GPRHi 196 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP----AEVKPGAGPRHI 196 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc----cccCCCCCcceE
Confidence 222 1011111111 123477888899899999999999999988886222111111 000233469999
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEcCCC---eE--EEEee--C---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARLTGQ---YR--YVLIS--G---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD- 309 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~~g~---~~--~~l~~--~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld- 309 (377)
++.+..+..|....-+++|.+...+.. .. +++.. . +-..-.+|.|.+...+||.++.+. ..|..+..+
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~ 275 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-DSIAVFSVDP 275 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-CeEEEEEEcC
Confidence 999999999999999999999988863 21 12211 1 234557899999999999999984 466555544
Q ss_pred -CCCeEEEE--ecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc--CCceEEEEecCCCCCcc
Q psy5792 310 -GKKQTILA--QEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS--GGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 310 -G~~~~~l~--~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~--G~~~~~~~~~~~~~~p~ 370 (377)
|..-..+. ...-+.|.++.+++.++.|+.+.. .++.|.....+ .+....+......+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv 340 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ-KSDNITVFERDKETGRLTLLGRYAVVPEPV 340 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc-CCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence 44322221 123456999999999999999988 77655555544 33333332223455553
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=111.58 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=140.3
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEc-CCC----CcEEE
Q psy5792 148 ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR-DGT----GRENI 222 (377)
Q Consensus 148 ~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~-~G~----~~~~i 222 (377)
++..|++.+-+- ||||..+|.-. +-..+.++..++-.-+|+++.++.||++|..+.+|+|++- .+. +.+++
T Consensus 374 ~DGSl~VGDfNy--IRRI~~dg~v~--tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv 449 (1899)
T KOG4659|consen 374 PDGSLIVGDFNY--IRRISQDGQVS--TILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV 449 (1899)
T ss_pred CCCcEEEccchh--eeeecCCCceE--EEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence 455788888777 99999988755 3233334577888999999999999999999999999763 221 23444
Q ss_pred Eecccc-------------CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee---------------
Q psy5792 223 IEYVET-------------GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS--------------- 274 (377)
Q Consensus 223 ~~~~~~-------------~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~--------------- 274 (377)
+...+. .....+..|.|||+| ..++||++|.. +|.+.+-+|-..+.+-.
T Consensus 450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~k 526 (1899)
T KOG4659|consen 450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITK 526 (1899)
T ss_pred eccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccc
Confidence 321111 011235569999999 68999999986 58888888754433221
Q ss_pred ---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeE-------------------EEEecCCCCceEEEEeCC
Q psy5792 275 ---GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT-------------------ILAQEIIMPIKDITLDRK 332 (377)
Q Consensus 275 ---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~-------------------~l~~~~~~~P~glalD~~ 332 (377)
-.+..|..+||||..+-||+-|. +-|.|+.-++..+- ......+..|..||+- .
T Consensus 527 l~~~~leWPT~LaV~Pmdnsl~Vld~---nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~ 602 (1899)
T KOG4659|consen 527 LVDLQLEWPTSLAVDPMDNSLLVLDT---NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-T 602 (1899)
T ss_pred hhheeeecccceeecCCCCeEEEeec---ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-C
Confidence 13789999999999999999984 46666665543321 1111114457899996 5
Q ss_pred CCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 333 NKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 333 ~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
.+-||++++ ...+|.++..-+++.+
T Consensus 603 ~G~lyvaEs-D~rriNrvr~~~tdg~ 627 (1899)
T KOG4659|consen 603 DGALYVAES-DGRRINRVRKLSTDGT 627 (1899)
T ss_pred CceEEEEec-cchhhhheEEeccCce
Confidence 799999999 8888888776666554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-08 Score=89.03 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=193.3
Q ss_pred CCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCC
Q psy5792 13 PSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 13 ~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
|...+|..++.+++ +.+++++..++.|-+.|.... .+++ ......+|++|.+ -++..+++|... .|.|++ .+++
T Consensus 59 p~G~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 59 PNGSAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCCCCccccccCCC-CceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc
Confidence 33678999999875 579999999999999999777 5555 2478889999999 777899999877 899999 4554
Q ss_pred ceEE-EecCCCceeE--EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 90 NSTV-LRNNAGISDF--ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 90 ~~~~-~~~~~~p~~i--~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
..+. +......-++ .|+++ ...|.|+...+ +.. .
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~----------------------------------------~G~lWFt~q~G--~yG-r 172 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP----------------------------------------WGNLWFTGQIG--AYG-R 172 (353)
T ss_pred eEEeecccccCCCcccceeeCC----------------------------------------CccEEEeeccc--cce-e
Confidence 4322 1100001111 12222 12355555443 333 3
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcceEEEecc
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTDIAVDWI 245 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~iavD~~ 245 (377)
|++... .-.+++......|.||...+ ++.+|++....+.|-+++.-....+++.. ++.+ +..+.|-.|++
T Consensus 173 LdPa~~--~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~------P~~~~~gsRriwsdpi 243 (353)
T COG4257 173 LDPARN--VISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQ------PNALKAGSRRIWSDPI 243 (353)
T ss_pred cCcccC--ceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecC------CCcccccccccccCcc
Confidence 444432 22345555556789999888 78999999999999999886445555543 1332 34677888974
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P 324 (377)
++++.|+..+++++++++.-+. .+--+-+.-.+|.++-|| ..++++.+|++ .+.|.|.+-.-..-+++-.. -.++
T Consensus 244 -g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~-agai~rfdpeta~ftv~p~p-r~n~ 319 (353)
T COG4257 244 -GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD-AGAIGRFDPETARFTVLPIP-RPNS 319 (353)
T ss_pred -CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccc-cCceeecCcccceEEEecCC-CCCC
Confidence 7899999999999999987653 333333446789999999 48999999986 68899988765555555543 3566
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
.-+.+|...+.|+.++. .-..+...
T Consensus 320 gn~ql~gr~ge~W~~e~-gvd~lv~~ 344 (353)
T COG4257 320 GNIQLDGRPGELWFTEA-GVDALVTT 344 (353)
T ss_pred CceeccCCCCceeeccc-CcceeEEE
Confidence 67999999999999998 66655443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-07 Score=89.36 Aligned_cols=245 Identities=8% Similarity=0.063 Sum_probs=147.2
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC-----CCCceEEEEE--ECCeEEEEcC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP-----DAAQVVAAVF--YKGRIIYSDA 76 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~-----~~~~p~~lav--~~~~ly~td~ 76 (377)
...|+++ +.++++.||++.+ ..+.|..+|+... ...|...+ ....|..+++ .+.+||++++
T Consensus 46 G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 46 GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence 4599996 9999999999999 8999999999877 55553211 1445557777 6668999998
Q ss_pred C-CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 77 N-DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 77 ~-~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
. ...+..+| ..++....+.- | .|.++....+.++ +++.
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~v---p------------------------~~~~vy~t~e~~~-------------~~~~ 164 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDV---P------------------------DCYHIFPTANDTF-------------FMHC 164 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeC---C------------------------CCcEEEEecCCcc-------------EEEe
Confidence 8 78899999 66666554432 1 2333322222221 1222
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEEEecC------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEE--ecc
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVLGPLS------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENII--EYV 226 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~~~~~------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~--~~~ 226 (377)
.++. ...+.++..+.. ...-.++. -..+| .|...++..+|.... |.|+.+++.+....... .-.
T Consensus 165 ~Dg~---~~~v~~d~~g~~-~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 165 RDGS---LAKVGYGTKGNP-KIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred ecCc---eEEEEecCCCce-EEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec
Confidence 2222 334333332210 00001110 12445 334435566666555 99999998664322211 100
Q ss_pred ccCCCCCCCCcce---EEEeccCCeEEEEc-CC--------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC-eEE
Q psy5792 227 ETGDPTPVDQFTD---IAVDWIAQNIYWSD-PK--------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG-YLF 293 (377)
Q Consensus 227 ~~~~~~~~~~p~~---iavD~~~~~lYwtd-~~--------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~ly 293 (377)
.......--+|.| +|+++.+++||+.. .. .++|.+++.....+..-+.. ...|.+|++.|... +||
T Consensus 237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence 0000001124555 99999999999953 22 26899999987765544444 45799999999989 999
Q ss_pred EEecCCCCeEEEEecCC
Q psy5792 294 WSESGKIPLIARAGLDG 310 (377)
Q Consensus 294 wtd~g~~~~I~r~~ldG 310 (377)
.++.. ...|..++...
T Consensus 316 vtn~~-s~~VsViD~~t 331 (352)
T TIGR02658 316 ALSTG-DKTLYIFDAET 331 (352)
T ss_pred EeCCC-CCcEEEEECcC
Confidence 99864 56677777543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-07 Score=84.93 Aligned_cols=271 Identities=10% Similarity=0.038 Sum_probs=154.1
Q ss_pred CCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc-CC
Q psy5792 26 SGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN-LD 87 (377)
Q Consensus 26 ~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~-~~ 87 (377)
+..++|+.|.. .++|..+|.+.. ..++ +....|.++ + .+..||++.. .++.|..+| .+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i---~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMT---DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEE---EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45689999998 499999999887 4555 455677776 6 6779999999 788899998 77
Q ss_pred CCceEEEecCCCce--------eEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-
Q psy5792 88 GSNSTVLRNNAGIS--------DFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS- 158 (377)
Q Consensus 88 g~~~~~~~~~~~p~--------~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~- 158 (377)
++....+.....|. .+.+ +++ ..+|++++-+
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~l-s~d---------------------------------------gk~l~V~n~~p 126 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSL-TPD---------------------------------------NKTLLFYQFSP 126 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEE-CCC---------------------------------------CCEEEEecCCC
Confidence 76655554322232 2222 221 1357766644
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc--cCCCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE--TGDPTPVDQ 236 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~--~~~~~~~~~ 236 (377)
...+..+++..... -...++.+ -...+........+.+. .++...+.++..+........- .....-+.+
T Consensus 127 ~~~V~VvD~~~~kv---v~ei~vp~--~~~vy~t~e~~~~~~~~---Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 127 SPAVGVVDLEGKAF---VRMMDVPD--CYHIFPTANDTFFMHCR---DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred CCEEEEEECCCCcE---EEEEeCCC--CcEEEEecCCccEEEee---cCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 44588888776533 11112211 11111111111122222 2333443333222111111000 000011245
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-----eeCC----CCCcee---EEEcCCCCeEEEEecC------
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-----ISGG----VDQPSA---LAVDPESGYLFWSESG------ 298 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-----~~~~----~~~P~~---iavdp~~g~lywtd~g------ 298 (377)
| ++-+..+..+|.... ++|.++++.+...... +... .-+|.| +++++.+++||++..+
T Consensus 199 P---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 199 P---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred C---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 6 333323444444444 8999999877532221 1111 224655 9999999999995422
Q ss_pred --CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccC
Q psy5792 299 --KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 299 --~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G 354 (377)
....|+.++.....+..-+.. -..|.+|++....+ +||.+.. ..+.|..+|...
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t 331 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST-GDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcC
Confidence 125788888764443333332 25789999999889 9999998 889999999764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-07 Score=89.99 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=146.3
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC-----CCCCceEEEEEEC-----CeEEEEcCCC-----
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM-----PDAAQVVAAVFYK-----GRIIYSDAND----- 78 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~-----~~~~~p~~lav~~-----~~ly~td~~~----- 78 (377)
++.|.++++.+. ++||+++. .++|.+++.+|. ...+... .....+.||++.. ++||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 357999999987 79999988 999999998888 3554321 3456789999966 6777764321
Q ss_pred ---CceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 79 ---GNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 79 ---~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
.+|.|+..+...... . . ...+
T Consensus 79 ~~~~~v~r~~~~~~~~~~-~------~-----------------------------------------------~~~l-- 102 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDL-S------S-----------------------------------------------EEVL-- 102 (331)
T ss_dssp SEEEEEEEEEEETTSCEE-E------E-----------------------------------------------EEEE--
T ss_pred CcceeeEEEeccCCcccc-c------c-----------------------------------------------ceEE--
Confidence 123333211100000 0 0 0000
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------------CCCcEEEEEcCCC-----
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-------------DHGTISRTHRDGT----- 217 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-------------~~~~I~~~~~~G~----- 217 (377)
+..+.... ........|+|++ +++||++-- ..++|.|++.+|+
T Consensus 103 ------~~~~p~~~------------~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dn 163 (331)
T PF07995_consen 103 ------VTGLPDTS------------SGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADN 163 (331)
T ss_dssp ------EEEEES-C------------SSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTS
T ss_pred ------EEEeCCCC------------CCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCC
Confidence 11111100 1222356688887 569998842 1368999999987
Q ss_pred --------CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCCe----E-------------
Q psy5792 218 --------GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQY----R------------- 269 (377)
Q Consensus 218 --------~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~~----~------------- 269 (377)
..++.. .++.+|.++++|+.++.||.+|.+.. .|.++...+.. +
T Consensus 164 P~~~~~~~~~~i~A--------~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 164 PFVGDDGADSEIYA--------YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp TTTTSTTSTTTEEE--------E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred ccccCCCceEEEEE--------eCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence 334444 48889999999998899999986543 45554432210 0
Q ss_pred ---------EEEeeCCCCCceeEEEcC------CCCeEEEEecCCCCeEEEEecCCCC----eEEEEecCCC-CceEEEE
Q psy5792 270 ---------YVLISGGVDQPSALAVDP------ESGYLFWSESGKIPLIARAGLDGKK----QTILAQEIIM-PIKDITL 329 (377)
Q Consensus 270 ---------~~l~~~~~~~P~~iavdp------~~g~lywtd~g~~~~I~r~~ldG~~----~~~l~~~~~~-~P~glal 329 (377)
..+.-..-..|.|+++-. ..|.+|+++++ ..+|++..++... .+.++. ++. .|.++++
T Consensus 236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~ 313 (331)
T PF07995_consen 236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG-GGRIWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQ 313 (331)
T ss_dssp GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEEECT-TSSS-EEEEEE
T ss_pred ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCC-CCEEEEEeeecCCCccceEEccc-cCCCCceEEEE
Confidence 011111235688888862 37789999996 7899999987442 223332 344 7899999
Q ss_pred eCCCCEEEEEEeCCCCeEEE
Q psy5792 330 DRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~ 349 (377)
++ .+.||+++. ..++|+|
T Consensus 314 ~p-DG~Lyv~~d-~~G~iyR 331 (331)
T PF07995_consen 314 GP-DGALYVSDD-SDGKIYR 331 (331)
T ss_dssp ET-TSEEEEEE--TTTTEEE
T ss_pred cC-CCeEEEEEC-CCCeEeC
Confidence 95 699999999 8898875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-10 Score=71.41 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC
Q psy5792 290 GYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331 (377)
Q Consensus 290 g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~ 331 (377)
++|||||++..++|+++++||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 589999997434999999999999999999999999999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-08 Score=92.93 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=112.2
Q ss_pred EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
.+-.++...+.|||+|...++|.+.+......+++.. .-.-+.++.+| ..++|..++.....+.. -.|.
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~ 96 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------PGGFSSGALID-AGGRLIACEHGVRLLDP--DTGG 96 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------CCCcccceeec-CCCeEEEEccccEEEec--cCCc
Confidence 3445677899999999999999999997444455443 23347788888 57888877776433333 2233
Q ss_pred eEEEEeeC----CCCCceeEEEcCCCCeEEEEecC-----C-----CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 268 YRYVLISG----GVDQPSALAVDPESGYLFWSESG-----K-----IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 268 ~~~~l~~~----~~~~P~~iavdp~~g~lywtd~g-----~-----~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
.++.+... ....|+...+|| .|.+|+++.+ . .++++|++.+|...+ ++...+..||||++++.+
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCC
Confidence 32344332 367899999998 5999999866 1 347999988655444 444448999999999999
Q ss_pred CEEEEEEeCCCCeEEEEEcc
Q psy5792 334 KRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~ 353 (377)
+.||++|+ ..++|.+++++
T Consensus 175 ~tly~aDT-~~~~i~r~~~d 193 (307)
T COG3386 175 KTLYVADT-PANRIHRYDLD 193 (307)
T ss_pred CEEEEEeC-CCCeEEEEecC
Confidence 99999999 99999999998
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=69.41 Aligned_cols=41 Identities=39% Similarity=0.645 Sum_probs=39.1
Q ss_pred CeEEEEcCCCC-EEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 247 QNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 247 ~~lYwtd~~~~-~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
++|||||...+ +|++++++|+.+++++..++..|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999999999999999999999999999996
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-05 Score=71.77 Aligned_cols=269 Identities=11% Similarity=0.080 Sum_probs=165.4
Q ss_pred cCCccccccCCCCeEEEEeCC--CCcEEEEEcCC---cEEEEE-eCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc--
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL--SHSLHYVNIEV---KVAKVV-SMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-- 85 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG---~~~~i~-~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-- 85 (377)
+.|+=+++++...+||.+... .+.|..+..|. +.+.+- +......|--+++ .+..||.++...+.|.+..
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 589999999999999999876 78887765554 444332 1133455688888 5558999998888888877
Q ss_pred CCCCceEEEe---cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 86 LDGSNSTVLR---NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 86 ~~g~~~~~~~---~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
.+|....++. .... | + .+| ...+|- .-.-+ | ...+|++.+...-+
T Consensus 120 ~dG~l~~~v~~~~h~g~~p------~-~rQ---~~~h~H--------~a~~t-----P--------~~~~l~v~DLG~Dr 168 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGP------H-ERQ---ESPHVH--------SANFT-----P--------DGRYLVVPDLGTDR 168 (346)
T ss_pred cCCccccceeeeecCCCCC------C-ccc---cCCccc--------eeeeC-----C--------CCCEEEEeecCCce
Confidence 5575533322 1111 2 2 223 111110 00000 1 11356666644445
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC--CcEEEEeccccCCCCC---CCC
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT--GRENIIEYVETGDPTP---VDQ 236 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~--~~~~i~~~~~~~~~~~---~~~ 236 (377)
|..++++....+. .....+.....|.-|.|++..+..|....-+++|-....+.. ..+.+-. ....+++ -.+
T Consensus 169 i~~y~~~dg~L~~-~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~--i~tlP~dF~g~~~ 245 (346)
T COG2706 169 IFLYDLDDGKLTP-ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT--IDTLPEDFTGTNW 245 (346)
T ss_pred EEEEEcccCcccc-ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee--eccCccccCCCCc
Confidence 7777776333211 111122445669999999999999999998999988888763 2222211 0111222 334
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-C
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-K 311 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~ 311 (377)
..+|.+.+.++.||.+|...+.|.++..+ |...+.+ ..+....||++.+++..++|+.+... ...|.....|. +
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~T 324 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKET 324 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCC
Confidence 66788999999999999998888776554 4443332 22456679999999999999999864 34466555554 3
Q ss_pred CeEEEEec
Q psy5792 312 KQTILAQE 319 (377)
Q Consensus 312 ~~~~l~~~ 319 (377)
++-.+...
T Consensus 325 G~L~~~~~ 332 (346)
T COG2706 325 GRLTLLGR 332 (346)
T ss_pred ceEEeccc
Confidence 34343333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-07 Score=90.13 Aligned_cols=153 Identities=21% Similarity=0.268 Sum_probs=109.5
Q ss_pred CCCceEEEEEECCCCEEEEEEc-----------CC-CcEEEEEc---CCCC-cEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDI-----------DH-GTISRTHR---DGTG-RENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~-----------~~-~~I~~~~~---~G~~-~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
.+.+|.+|++|. .++||+++. .. ++|.++.- ||.. ...++. +++..|.||++.. +
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-------~~l~~p~Gi~~~~-~ 82 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-------EELSMVTGLAVAV-G 82 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-------cCCCCccceeEec-C
Confidence 367899999998 688999974 22 38888765 3432 223444 5788999999984 4
Q ss_pred CeEEEEcCCCCEEEEE-EcCCC-----eEEEEeeC---C----CCCceeEEEcCCCCeEEEEecCC--------------
Q psy5792 247 QNIYWSDPKENVIEVA-RLTGQ-----YRYVLISG---G----VDQPSALAVDPESGYLFWSESGK-------------- 299 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~-~~~g~-----~~~~l~~~---~----~~~P~~iavdp~~g~lywtd~g~-------------- 299 (377)
+ ||+++.. +|.++ +.+|. .++++++. . ...|++++++| .|+||+++...
T Consensus 83 G-lyV~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 83 G-VYVATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred C-EEEeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCc
Confidence 5 9999754 58776 44442 34455542 1 23388999998 78999987510
Q ss_pred ----CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 300 ----IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 300 ----~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
...|+|++.+|+..+++.. .+.+|+||++|. .++||++|. ......+++
T Consensus 159 ~~~~~g~i~r~~pdg~~~e~~a~-G~rnp~Gl~~d~-~G~l~~tdn-~~~~~~~i~ 211 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLRVVAH-GFQNPYGHSVDS-WGDVFFCDN-DDPPLCRVT 211 (367)
T ss_pred ccccCceEEEEecCCCeEEEEec-CcCCCccceECC-CCCEEEEcc-CCCceeEEc
Confidence 1469999999988776655 589999999996 689999998 666555554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-06 Score=77.68 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=112.0
Q ss_pred ecCCCC-ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 180 PLSKVS-LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 180 ~~~~~~-~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
++.+.. ++.|++|++.++.||...-..+.|+.++++|...+.+-- .+.+.++||++- -++.+..++...++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------~g~~D~EgI~y~-g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------DGFGDYEGITYL-GNGRYVLSEERDQR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------SS-SSEEEEEE--STTEEEEEETTTTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------CCCCCceeEEEE-CCCEEEEEEcCCCc
Confidence 445543 599999999999999888788999999999876666654 577889999996 34555667777888
Q ss_pred EEEEEcCC--Ce--EEE--EeeCC-----CCCceeEEEcCCCCeEEEEecCCCCeEEEEec--CCCCeEEEEec------
Q psy5792 259 IEVARLTG--QY--RYV--LISGG-----VDQPSALAVDPESGYLFWSESGKIPLIARAGL--DGKKQTILAQE------ 319 (377)
Q Consensus 259 I~~~~~~g--~~--~~~--l~~~~-----~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l--dG~~~~~l~~~------ 319 (377)
+..+..+. .. ... -+..+ -....|||.||.++.||.+......+|+..+. .+.........
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 98888843 21 111 11111 12368999999999999997654446888876 33332222221
Q ss_pred -CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEe
Q psy5792 320 -IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 320 -~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
.+..|.+|++|+.+++||+... .+++|..++.+|.-...+.+
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~-es~~l~~~d~~G~~~~~~~L 210 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSD-ESRLLLELDRQGRVVSSLSL 210 (248)
T ss_dssp --SS---EEEEETTTTEEEEEET-TTTEEEEE-TT--EEEEEE-
T ss_pred ceeccccceEEcCCCCeEEEEEC-CCCeEEEECCCCCEEEEEEe
Confidence 2567999999999999999999 99999999999765554444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-07 Score=87.02 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=107.1
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec---cCCeEEEEcCC------
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW---IAQNIYWSDPK------ 255 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~---~~~~lYwtd~~------ 255 (377)
++|.+|++.+ ++.||+++. .++|++++.+|.....+.... .....+.....+||+|+ .++.||++-..
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAER-SGRIWVVDKDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEET-TSCEEEEET-TTEEEEEETTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEeC-CCcEEEEeC-CceEEEEeCCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 5799999998 489999997 899999997776533333211 11112334588999998 35788887552
Q ss_pred --CCEEEEEEcCCC-----eEEEEeeC------CCCCceeEEEcCCCCeEEEEecC------------CCCeEEEEecCC
Q psy5792 256 --ENVIEVARLTGQ-----YRYVLISG------GVDQPSALAVDPESGYLFWSESG------------KIPLIARAGLDG 310 (377)
Q Consensus 256 --~~~I~~~~~~g~-----~~~~l~~~------~~~~P~~iavdp~~g~lywtd~g------------~~~~I~r~~ldG 310 (377)
..+|.+..++.. ..++++.. ....-.+|+++| .|+||++--. ...+|.|++.||
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 247888888654 23344432 234557899998 6799998411 146899999998
Q ss_pred C-------------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 311 K-------------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 311 ~-------------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
+ ...+ ....+.+|.++++|+.+++||.+|. +....+.+
T Consensus 158 ~~p~dnP~~~~~~~~~~i-~A~GlRN~~~~~~d~~tg~l~~~d~-G~~~~dei 208 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEI-YAYGLRNPFGLAFDPNTGRLWAADN-GPDGWDEI 208 (331)
T ss_dssp SB-TTSTTTTSTTSTTTE-EEE--SEEEEEEEETTTTEEEEEEE--SSSSEEE
T ss_pred cCCCCCccccCCCceEEE-EEeCCCccccEEEECCCCcEEEEcc-CCCCCcEE
Confidence 7 3444 4445999999999988899999998 66554444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=90.94 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=114.2
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC---------
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--------- 255 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--------- 255 (377)
++|.|++++..++.||++|. .-.++.++..|...+.+....++ ..+.-..++.||. ++.+||||..
T Consensus 115 GRPLGl~f~~~ggdL~VaDA-YlGL~~V~p~g~~a~~l~~~~~G---~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~ 189 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA-YLGLLKVGPEGGLAELLADEAEG---KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFV 189 (376)
T ss_pred CCcceEEeccCCCeEEEEec-ceeeEEECCCCCcceeccccccC---eeeeecCceeEcC-CCeEEEeccccccchhheE
Confidence 57999999999999999995 45788888988765555541111 2233478999998 9999999975
Q ss_pred --------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe---EEEEecCCCCc
Q psy5792 256 --------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ---TILAQEIIMPI 324 (377)
Q Consensus 256 --------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~---~~l~~~~~~~P 324 (377)
.+|+++.++..+..++|++ ++.-|+|+|+.|...++-+++.. ..+|.|..+.|... .++++.--..|
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLld-~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~LPG~P 267 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLLD-GLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGLPGYP 267 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhhh-cccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcCCCCC
Confidence 3567777776666667776 59999999999999999999975 78999999999766 66666446789
Q ss_pred eEEEEeCCCCEEEEEE
Q psy5792 325 KDITLDRKNKRVYWCY 340 (377)
Q Consensus 325 ~glalD~~~~~LYw~d 340 (377)
.-|..+ .++..+++-
T Consensus 268 DNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 268 DNIRRD-STGHFWVAL 282 (376)
T ss_pred cceeEC-CCCCEEEEE
Confidence 999998 556555543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-06 Score=76.39 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=126.8
Q ss_pred CccccccCCCCeEEEEeCCC------------CcEEEEEcCCc--EEEEE-eC---CCCCceEEEEEEC-------CeEE
Q psy5792 18 VASTLKPQSGPFVYGVKTLS------------HSLHYVNIEVK--VAKVV-SM---PDAAQVVAAVFYK-------GRII 72 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~------------~~I~~~~~dG~--~~~i~-~~---~~~~~p~~lav~~-------~~ly 72 (377)
+-++.+|. .++|+++|++. -+|..+|+... .+++. .. ........|++.. .++|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 45678886 57999999873 47899999877 45443 11 1234567788844 5899
Q ss_pred EEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcE
Q psy5792 73 YSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDF 151 (377)
Q Consensus 73 ~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~ 151 (377)
+||.....|.+++ .+|+..+++.....+ .|. .
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~------~p~-----------------------------------------~ 114 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSP------DPD-----------------------------------------A 114 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTT------S-S-----------------------------------------S
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcce------ecc-----------------------------------------c
Confidence 9999999999999 888888877642221 000 0
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEEC---CCCEEEEEEcCCCcEEEEEcC----CCC------
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA---AEDYIYWVDIDHGTISRTHRD----GTG------ 218 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~---~~~~ly~sd~~~~~I~~~~~~----G~~------ 218 (377)
..+..... . +.. .....|++..+ .++.|||.-..+.+++++... .+.
T Consensus 115 ~~~~i~g~--~--~~~----------------~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~ 174 (287)
T PF03022_consen 115 GPFTIGGE--S--FQW----------------PDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQAL 174 (287)
T ss_dssp EEEEETTE--E--EEE----------------TTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-H
T ss_pred cceeccCc--e--Eec----------------CCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccc
Confidence 00111100 0 000 01255666654 356999999888899998863 211
Q ss_pred ---cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC----CeEEEEee-CC-CCCceeEEEcC-C
Q psy5792 219 ---RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG----QYRYVLIS-GG-VDQPSALAVDP-E 288 (377)
Q Consensus 219 ---~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g----~~~~~l~~-~~-~~~P~~iavdp-~ 288 (377)
.+.+.. ......|+++|. +|+||+++-..+.|.+.+.++ ....++.. .. +..|.++++++ .
T Consensus 175 ~~~v~~lG~--------k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~ 245 (287)
T PF03022_consen 175 ASQVQDLGD--------KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEG 245 (287)
T ss_dssp HHT-EEEEE-----------SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--
T ss_pred cccceeccc--------cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecccc
Confidence 122221 224678999996 999999999999999999999 23344444 34 78999999995 3
Q ss_pred CCeEEEEe
Q psy5792 289 SGYLFWSE 296 (377)
Q Consensus 289 ~g~lywtd 296 (377)
+|+||+..
T Consensus 246 ~g~L~v~s 253 (287)
T PF03022_consen 246 DGYLWVLS 253 (287)
T ss_dssp TS-EEEEE
T ss_pred CceEEEEE
Confidence 69999986
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.5e-06 Score=73.70 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=163.7
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEE-EecCCCceeEEeeecCCCCcccCCCcCCCCCCceecccc
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTV-LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGP 132 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~-~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~ 132 (377)
.....|+.++. .++.+++++..++.|-+.| .+|+..++ +.++..|++|.+ .++.
T Consensus 59 p~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~-gpdg---------------------- 115 (353)
T COG4257 59 PNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVV-GPDG---------------------- 115 (353)
T ss_pred CCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEE-CCCC----------------------
Confidence 56678999999 6667999999999999999 88987655 555555999886 3321
Q ss_pred CCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 133 LSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 133 ~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
-..+.+... .|.|++-+..+. +...+|.. ...+.....||. .++|+++.. .+---|
T Consensus 116 ------------------~~Witd~~~-aI~R~dpkt~ev--t~f~lp~~~a~~nlet~vfD~-~G~lWFt~q-~G~yGr 172 (353)
T COG4257 116 ------------------SAWITDTGL-AIGRLDPKTLEV--TRFPLPLEHADANLETAVFDP-WGNLWFTGQ-IGAYGR 172 (353)
T ss_pred ------------------CeeEecCcc-eeEEecCcccce--EEeecccccCCCcccceeeCC-CccEEEeec-ccccee
Confidence 133333331 388876655444 33333322 122334455776 789999875 333335
Q ss_pred EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee-CC-CCCceeEEEcCCC
Q psy5792 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GG-VDQPSALAVDPES 289 (377)
Q Consensus 212 ~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~-~~-~~~P~~iavdp~~ 289 (377)
++......++.-. ..-..|+||.+.+ ++.+|++.-..+-|.+++.-....+++.. +. -..-|.|..|| -
T Consensus 173 LdPa~~~i~vfpa-------PqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-i 243 (353)
T COG4257 173 LDPARNVISVFPA-------PQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-I 243 (353)
T ss_pred cCcccCceeeecc-------CCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-c
Confidence 5554333444433 3334699999996 78899998877889988876544444432 22 23457889998 6
Q ss_pred CeEEEEecCCCCeEEEEecCCCC-eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 290 GYLFWSESGKIPLIARAGLDGKK-QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 290 g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|+++.|+|+ +++++|++..-+. +.--+...-..|..+-+| ..+|++.+|. ..+.|.+.+.. +.+.+++
T Consensus 244 g~~wittwg-~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea-~agai~rfdpe-ta~ftv~ 312 (353)
T COG4257 244 GRAWITTWG-TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEA-DAGAIGRFDPE-TARFTVL 312 (353)
T ss_pred CcEEEeccC-CceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeecc-ccCceeecCcc-cceEEEe
Confidence 999999997 7999999866443 221122223578889999 5789999999 99999999887 3444443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00015 Score=70.18 Aligned_cols=269 Identities=16% Similarity=0.109 Sum_probs=151.4
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCce-EEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCce
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQV-VAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGIS 101 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p-~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~ 101 (377)
..+|+++...+.|..+|.+.. ..++ +....+ .++++ .+.++|+++. ++.|..+| .+++....+..+..|.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i---~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARI---PTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEE---E-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEE---cCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCCCcc
Confidence 356789999999999999877 5555 333344 44666 4678999985 57999999 7888777777666699
Q ss_pred eEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec
Q psy5792 102 DFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181 (377)
Q Consensus 102 ~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~ 181 (377)
++++...+ .++++++...+.+..++....+. .. ..+.
T Consensus 82 ~i~~s~DG----------------------------------------~~~~v~n~~~~~v~v~D~~tle~--v~-~I~~ 118 (369)
T PF02239_consen 82 GIAVSPDG----------------------------------------KYVYVANYEPGTVSVIDAETLEP--VK-TIPT 118 (369)
T ss_dssp EEEE--TT----------------------------------------TEEEEEEEETTEEEEEETTT--E--EE-EEE-
T ss_pred eEEEcCCC----------------------------------------CEEEEEecCCCceeEeccccccc--ee-eccc
Confidence 98874332 25676765555577777655433 11 1222
Q ss_pred C------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC
Q psy5792 182 S------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 182 ~------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~ 255 (377)
. ..+++.++...+......++-.+.++|+.++........+... ..-..|.+..+|+.++.++.+...
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i------~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI------KVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE------E--TTEEEEEE-TTSSEEEEEEGG
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee------cccccccccccCcccceeeecccc
Confidence 1 2245667766665555555556789999998764322221110 122359999999988888888777
Q ss_pred CCEEEEEEcCCCeEEEEeeCC-CCCce--eEEEcCCCCeEEEEecC-CCCeEEEEecCC---------CCeEEEEecCCC
Q psy5792 256 ENVIEVARLTGQYRYVLISGG-VDQPS--ALAVDPESGYLFWSESG-KIPLIARAGLDG---------KKQTILAQEIIM 322 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~~-~~~P~--~iavdp~~g~lywtd~g-~~~~I~r~~ldG---------~~~~~l~~~~~~ 322 (377)
.++|.+++........++..+ ..+|. .=..||..|.+ |+..+ ....|--+..+- +..+.+-. ..
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v-w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~--~G 269 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV-WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT--QG 269 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE-EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SS
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCCCcceE-EeeccccceecccccCCccccchhhcCeEEEEEEC--CC
Confidence 889999999887666666542 22332 33478866665 54432 223333332221 12233332 24
Q ss_pred CceEEEEeCCCCEEEEE---EeCCCCeEEEEEcc
Q psy5792 323 PIKDITLDRKNKRVYWC---YSVGSNVLESMDYS 353 (377)
Q Consensus 323 ~P~glalD~~~~~LYw~---d~~~~~~i~~~~~~ 353 (377)
.|..+...+.+.+||+. .. ..+.|.-++..
T Consensus 270 ~glFi~thP~s~~vwvd~~~~~-~~~~v~viD~~ 302 (369)
T PF02239_consen 270 GGLFIKTHPDSRYVWVDTFLNP-DADTVQVIDKK 302 (369)
T ss_dssp SS--EE--TT-SEEEEE-TT-S-SHT-EEEEECC
T ss_pred CcceeecCCCCccEEeeccCCC-CCceEEEEECc
Confidence 55667776555555554 24 55677777766
|
... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9e-06 Score=73.63 Aligned_cols=204 Identities=10% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEcCCCCceEEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSINLDGSNSTVL 94 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~g~~~~~~ 94 (377)
-.++++-++++..||-+-..--.|..++++|. ++++- ...+.+|.+|++- +++.-.+|-..+.+..+..+-+.. ++
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~-~~ 164 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT-VI 164 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc-EE
Confidence 47899999999999999888889999999999 87773 4678999999994 445556677777776665211100 00
Q ss_pred ecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCcee
Q psy5792 95 RNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKV 174 (377)
Q Consensus 95 ~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~ 174 (377)
. . . ..++.|+....
T Consensus 165 ~-----------------------------------------------------------~--~---~~~i~L~~~~k-- 178 (316)
T COG3204 165 S-----------------------------------------------------------A--K---VQKIPLGTTNK-- 178 (316)
T ss_pred e-----------------------------------------------------------c--c---ceEEeccccCC--
Confidence 0 0 0 11334433211
Q ss_pred eEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEcCCCCcEEEEe-ccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 175 TQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHRDGTGRENIIE-YVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~~G~~~~~i~~-~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
....-.|+++|+.++++|++-.. .-.|+..+..-+....-.. .....-.--+....|+.+|..+++|++-
T Consensus 179 --------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 179 --------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred --------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 12346799999999999998653 4577777644222111111 0000000003357899999999999999
Q ss_pred cCCCCEEEEEEcCCCeEEEEee--------CCCCCceeEEEcCCCCeEEEEec
Q psy5792 253 DPKENVIEVARLTGQYRYVLIS--------GGVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 253 d~~~~~I~~~~~~g~~~~~l~~--------~~~~~P~~iavdp~~g~lywtd~ 297 (377)
....+.+...+++|..+..+.- .++.+|.|||+|. .|.||.+..
T Consensus 251 S~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvSE 302 (316)
T COG3204 251 SDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVSE 302 (316)
T ss_pred ecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEec
Confidence 8888999999999986554332 2478999999996 899999863
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-05 Score=73.23 Aligned_cols=297 Identities=9% Similarity=0.049 Sum_probs=163.7
Q ss_pred eeEeeccccC------CCCcCC-ccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeE
Q psy5792 3 YLHVLPYTRN------PSFGAV-ASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRI 71 (377)
Q Consensus 3 ~~~~~~~~~~------~~~~~~-~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~l 71 (377)
-+.|.|-... ++...| .+++..+++.++|++.. .+.|..+|+... ..++ .....|.++++ .+.++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i---~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATI---KVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEE---E-SSEEEEEEE--TTTEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEE---ecCCCcceEEEcCCCCEE
Confidence 3455555433 344443 56777888889999964 689999999777 6666 45778999999 56689
Q ss_pred EEEcCCCCceEEEc-CCCCceEEEecCC------CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 72 IYSDANDGNIRSIN-LDGSNSTVLRNNA------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 72 y~td~~~~~I~~~~-~~g~~~~~~~~~~------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
|+++...+.+..+| .+.+..+.+.... ++.-..++...
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~----------------------------------- 137 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP----------------------------------- 137 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-----------------------------------
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-----------------------------------
Confidence 99999999999999 6666665554211 01111111111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~ 224 (377)
..+.++++..+.++|..++...... .....+.....+....+|+...+++.+....++|..++........++.
T Consensus 138 ---~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 138 ---GRPEFVVNLKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp ---SSSEEEEEETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEEccCCeEEEEEeccccc---cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 1123566666667798888755432 1222233345688899999888999988888899999987433333332
Q ss_pred ccccCCCCCCCCcceE--EEeccCCeEEEEcCC--CCEEEEEEcCC---------CeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 225 YVETGDPTPVDQFTDI--AVDWIAQNIYWSDPK--ENVIEVARLTG---------QYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~i--avD~~~~~lYwtd~~--~~~I~~~~~~g---------~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
. ....+|..+ -.++..+- +|+-.+ ...|-.+..+- +..+.+-. ...|..+..+|...+
T Consensus 212 ~------g~~p~~~~~~~~php~~g~-vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~--~G~glFi~thP~s~~ 282 (369)
T PF02239_consen 212 T------GKKPHPGPGANFPHPGFGP-VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT--QGGGLFIKTHPDSRY 282 (369)
T ss_dssp -------SSSBEETTEEEEEETTTEE-EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SSSS--EE--TT-SE
T ss_pred c------cccccccccccccCCCcce-EEeeccccceecccccCCccccchhhcCeEEEEEEC--CCCcceeecCCCCcc
Confidence 0 111122222 25654444 454332 22323322221 12333322 345689999998888
Q ss_pred EEEEecC--CCCeEEEEecCCCCeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCC-eEEEEEccC
Q psy5792 292 LFWSESG--KIPLIARAGLDGKKQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSN-VLESMDYSG 354 (377)
Q Consensus 292 lywtd~g--~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~-~i~~~~~~G 354 (377)
||+.... ....|..++..--....-+.. .-..+..+.....+.++|++.+ ..+ +|..++-..
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~-~~~~~i~v~D~~T 348 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW-DGNGAIVVYDAKT 348 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTT
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe-cCCCEEEEEECCC
Confidence 7776211 246788877664321111111 1123678889999999999999 777 898888763
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00015 Score=71.30 Aligned_cols=235 Identities=12% Similarity=0.116 Sum_probs=141.8
Q ss_pred cCCCCeEEEEeC-C--CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCe-EEEEcCC--CCceEEEc-CCCCceEE
Q psy5792 24 PQSGPFVYGVKT-L--SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGR-IIYSDAN--DGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 24 d~~~~~ly~~d~-~--~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~-ly~td~~--~~~I~~~~-~~g~~~~~ 93 (377)
...+..+|++.. . ..+|..+|.||. .+++. ... .-..-.+ .+++ +|++... ...|+..+ .+|+...
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~--~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~- 227 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIV--KGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK- 227 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEc--cCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-
Confidence 445678888873 3 579999999999 87776 222 2223344 4554 7776554 46799999 4454433
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEEEcCCCC
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGIKYNKNE 171 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~~l~~~~ 171 (377)
+....+.......+|+.. .++++.. ....|..+++++..
T Consensus 228 lt~~~g~~~~~~~SPDG~---------------------------------------~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGS---------------------------------------KLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EecCCCcEEeeEECCCCC---------------------------------------EEEEEEccCCCcEEEEEECCCCc
Confidence 332222111112233321 3444332 12348888877664
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
. ..+..... ....-.+.+.+++||++.... ..|+++++++...+.+.. .+... .++.+.++.|
T Consensus 269 ~---~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-------~g~~~---~~~SPDG~~I 333 (419)
T PRK04043 269 L---TQITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-------HGKNN---SSVSTYKNYI 333 (419)
T ss_pred E---EEcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-------CCCcC---ceECCCCCEE
Confidence 3 12221111 122335777788899886433 389999999877656554 22222 3667778888
Q ss_pred EEEcCCC--------CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 250 YWSDPKE--------NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 250 Ywtd~~~--------~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.++.... ..|.+.++++...+.|...... ...+..|....|+++.. +....|..++++|.....+..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~--~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVN--QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCc--CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 7775432 4899999998877666654322 34678888888888764 335679999999988777654
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-06 Score=79.77 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=108.5
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc------CCeEEEEcC
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI------AQNIYWSDP 254 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~------~~~lYwtd~ 254 (377)
.+++..|.+|++.+ +++||++....++|++++.++...+.+..........+...+.+||+++. ++.||++..
T Consensus 26 a~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 26 LSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred ECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 35788999999988 67999999777999999876543333221000000013456899999854 457888741
Q ss_pred ---------CCCEEEEEEcCCC-----eEEEEeeC----CCCCceeEEEcCCCCeEEEEe--cCC---------------
Q psy5792 255 ---------KENVIEVARLTGQ-----YRYVLISG----GVDQPSALAVDPESGYLFWSE--SGK--------------- 299 (377)
Q Consensus 255 ---------~~~~I~~~~~~g~-----~~~~l~~~----~~~~P~~iavdp~~g~lywtd--~g~--------------- 299 (377)
...+|.|..++.. ..++++.. ....-..|+++| .|+||++- .+.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~ 183 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHT 183 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccc
Confidence 2468999988632 23445542 123346899998 68999974 210
Q ss_pred --------------CCeEEEEecCCCC----------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 300 --------------IPLIARAGLDGKK----------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 300 --------------~~~I~r~~ldG~~----------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
..+|.|++.||+- +..+..-.+.+|.||++|+ +++||.+|. +.
T Consensus 184 ~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~-Gp 250 (454)
T TIGR03606 184 PTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQ-GP 250 (454)
T ss_pred cccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEec-CC
Confidence 2379999999972 2345665699999999997 799999998 55
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00036 Score=69.13 Aligned_cols=184 Identities=11% Similarity=0.123 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+.... ....+.++.+.+.+|+++-.. ...|+.+++++...+.+.. .-....
T Consensus 227 ~i~~~dl~~g~~---~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--------~~~~~~ 293 (435)
T PRK05137 227 RVYLLDLETGQR---ELVGNFP--GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--------SPAIDT 293 (435)
T ss_pred EEEEEECCCCcE---EEeecCC--CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC--------CCCccC
Confidence 488888876543 2222221 234466777878888776433 3469999998766555443 112233
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.+++|...+.+... ...-...+..|...+|+++... ...+|...+++|...+.
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 45666667777766432 35899999998766655542 2223456788888899887643 23589999998877665
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCC-----CeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGS-----NVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~-----~~i~~~~~~G~~~~~~~ 361 (377)
+... .....+++.+.++.||++-. .. ..++.++++|+..+.+.
T Consensus 373 lt~~--~~~~~p~~spDG~~i~~~~~-~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 373 LTSG--FLVEGPTWAPNGRVIMFFRQ-TPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ccCC--CCCCCCeECCCCCEEEEEEc-cCCCCCcceEEEEECCCCceEEcc
Confidence 5443 23445677777788888654 22 47999999988776553
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-06 Score=79.46 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=104.6
Q ss_pred CCEEEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee
Q psy5792 196 EDYIYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS 274 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~ 274 (377)
++.|+|+-...+-|-++...- +.+.............-.++|-|||+|..+++||++|.-. -++..+++|...+.+..
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD 153 (376)
T ss_pred CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc
Confidence 556678766666666555521 1111110000000002347899999998888999999874 47778888877544444
Q ss_pred CC----CCCceeEEEcCCCCeEEEEecCC----------------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 275 GG----VDQPSALAVDPESGYLFWSESGK----------------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 275 ~~----~~~P~~iavdp~~g~lywtd~g~----------------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
.. +.-..++.||+ +|.+||||..+ .+|+.+.+..-+..++|..+ +..|+|+++.+...
T Consensus 154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~-L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG-LYFPNGLALSPDGS 231 (376)
T ss_pred cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc-ccccccccCCCCCC
Confidence 32 33357999998 99999999542 22343433333344455554 89999999999999
Q ss_pred EEEEEEeCCCCeEEEEEccCCce
Q psy5792 335 RVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
.+.+++. ...+|.++=+.|...
T Consensus 232 fvl~~Et-~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 232 FVLVAET-TTARIKRYWIKGPKA 253 (376)
T ss_pred EEEEEee-ccceeeeeEecCCcc
Confidence 9999999 999999998887643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00039 Score=68.92 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=134.8
Q ss_pred CeEEEEeCC------CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcCCCCceEEEec
Q psy5792 28 PFVYGVKTL------SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINLDGSNSTVLRN 96 (377)
Q Consensus 28 ~~ly~~d~~------~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~ 96 (377)
.+|+|+... ..+|+.+|.+|. .+++. .........++ .+.+|+++... ...|+..+..+...+.+..
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~ 243 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN 243 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec
Confidence 456555432 348999999999 87775 33334455556 56677666532 3568888843333333322
Q ss_pred CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCce
Q psy5792 97 NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS--GYDIMGIKYNKNESK 173 (377)
Q Consensus 97 ~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~ 173 (377)
..+ ..... ++|+. ..|+++... ...|..+++++...
T Consensus 244 ~~g~~~~~~-~SPDG---------------------------------------~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 244 FPGMTFAPR-FSPDG---------------------------------------RKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred CCCcccCcE-ECCCC---------------------------------------CEEEEEEecCCCceEEEEECCCCce-
Confidence 111 11111 12211 234444321 12377778776543
Q ss_pred eeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
..+.. ........++.+.+.+|+++.... ..|+.++++|...+.+.. .-......++.+.++.|++
T Consensus 283 --~~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--------~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 283 --TRLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--------GGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred --EEccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--------CCCcccCeEECCCCCEEEE
Confidence 11111 112233456777778887765333 479999998876666553 1122334566666788877
Q ss_pred EcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CC---CeEEEEecCCCCeEEEE
Q psy5792 252 SDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KI---PLIARAGLDGKKQTILA 317 (377)
Q Consensus 252 td~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~---~~I~r~~ldG~~~~~l~ 317 (377)
+... ..+|.+.++++...+.+... ......++.|....|+++-.. .. .+|++++++|...+.+.
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 7543 34799999988766555432 245677889988888886532 12 57999999988776554
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-05 Score=76.35 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=64.1
Q ss_pred CCEEEEEEc---------CCCcEEEEEcCCC-----CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC------
Q psy5792 196 EDYIYWVDI---------DHGTISRTHRDGT-----GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK------ 255 (377)
Q Consensus 196 ~~~ly~sd~---------~~~~I~~~~~~G~-----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~------ 255 (377)
+++||++-. ...+|.|+.++.. ..++++.. ... ...+.-..|++++ .+.||++-..
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~-lP~--~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~ 171 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG-LPA--GNDHNGGRLVFGP-DGKIYYTIGEQGRNQG 171 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEec-CCC--CCCcCCceEEECC-CCcEEEEECCCCCCCc
Confidence 457777631 1357888877521 23444431 000 1123356789986 5789996221
Q ss_pred --------------------------CCEEEEEEcCCCe----------EEEEeeCCCCCceeEEEcCCCCeEEEEecC
Q psy5792 256 --------------------------ENVIEVARLTGQY----------RYVLISGGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 256 --------------------------~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~lywtd~g 298 (377)
.++|.|++.||+. +..+.+.++.+|.++++|| +|.||.+|.|
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 2489999999962 3346666799999999999 8999999976
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-07 Score=58.27 Aligned_cols=41 Identities=41% Similarity=0.767 Sum_probs=36.3
Q ss_pred EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 271 ~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
+++..++..|.+||+|+.+++|||+|+. ...|++++++|++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~-~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCC-CCEEEEEeCCCCC
Confidence 3455578999999999999999999996 5999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-06 Score=64.93 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=58.6
Q ss_pred ceEEEeccCCeEEEEcCC-----------------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCC
Q psy5792 238 TDIAVDWIAQNIYWSDPK-----------------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~ 300 (377)
.+|+|+..+|.|||||.. ++++.+.++..+..++++++ +.-|+|||+.+.+.+|++++.+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~-~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETG-R 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGG-G
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEecc-C
Confidence 378999767999999974 47999999999998888884 9999999999999999999986 6
Q ss_pred CeEEEEecCCC
Q psy5792 301 PLIARAGLDGK 311 (377)
Q Consensus 301 ~~I~r~~ldG~ 311 (377)
.+|.|..+.|.
T Consensus 79 ~Ri~rywl~Gp 89 (89)
T PF03088_consen 79 YRILRYWLKGP 89 (89)
T ss_dssp TEEEEEESSST
T ss_pred ceEEEEEEeCC
Confidence 99999999873
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00049 Score=68.44 Aligned_cols=245 Identities=10% Similarity=0.087 Sum_probs=139.6
Q ss_pred CCccccccCCCCeEEEEeCCC----CcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLS----HSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLD 87 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~----~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~ 87 (377)
..+|..-...+.-.|++.... .+|..+|.||. .+++. .........++ .+.+|+|+...+ ..|+.++.+
T Consensus 173 ~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~ 250 (448)
T PRK04792 173 KLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY 250 (448)
T ss_pred HhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC
Confidence 445555555555667766543 37888999999 77775 22222233445 566787765433 358888844
Q ss_pred CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEE
Q psy5792 88 GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMG 164 (377)
Q Consensus 88 g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~ 164 (377)
+...+.+....+ .... ..+|+. ..|+++....| .|..
T Consensus 251 tg~~~~lt~~~g~~~~~-~wSPDG---------------------------------------~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 251 TQVREKVTSFPGINGAP-RFSPDG---------------------------------------KKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCCeEEecCCCCCcCCe-eECCCC---------------------------------------CEEEEEEeCCCCeEEEE
Confidence 333333322111 1111 112221 23444332222 4777
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav 242 (377)
+++++... ..+.. ........++.+.++.|+++.... ..|+++++++...+.+.. .+ ....+.++
T Consensus 291 ~dl~tg~~---~~lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-------~g-~~~~~~~~ 357 (448)
T PRK04792 291 VDIATKAL---TRITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-------EG-EQNLGGSI 357 (448)
T ss_pred EECCCCCe---EECcc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-------CC-CCCcCeeE
Confidence 77776533 11111 112234456777788888875433 479999988665555432 11 12334577
Q ss_pred eccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 243 DWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 243 D~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
.+.++.||++.... .+|.+.++++...+.+..... -...++.|....|+++... ....|+.++.+|...+.+..
T Consensus 358 SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 358 TPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 77788898886543 478899998876655543322 1233688888888887642 24568888999988776643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0005 Score=65.91 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=102.4
Q ss_pred CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC
Q psy5792 197 DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG 276 (377)
Q Consensus 197 ~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~ 276 (377)
+.+-..+.....+...+.+|...+.+.. +++.+.++++++.+..+-+++. +..|++.+++....+.+-.+.
T Consensus 372 e~~vigt~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNd-r~el~vididngnv~~idkS~ 442 (668)
T COG4946 372 EGDVIGTNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGNVRLIDKSE 442 (668)
T ss_pred cceEEeccCCceEEEEecCCceEEEeeC--------CccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCCeeEecccc
Confidence 3455555566688888999887777764 8999999999976666766655 468999999988887776666
Q ss_pred CCCceeEEEcCCCCeEEEEecCC--CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 277 VDQPSALAVDPESGYLFWSESGK--IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 277 ~~~P~~iavdp~~g~lywtd~g~--~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
-....+++++|...++=++=... ...|...+|+|...-.+.+. -.+-..-|.|+.++.||+...
T Consensus 443 ~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 443 YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCcEEEEEec
Confidence 66788999999888877764321 45788899999776665554 345556789999999999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0016 Score=64.21 Aligned_cols=241 Identities=8% Similarity=0.057 Sum_probs=146.3
Q ss_pred EEECCeEEEEcCC---CCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCC
Q psy5792 65 VFYKGRIIYSDAN---DGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAK 141 (377)
Q Consensus 65 av~~~~ly~td~~---~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G 141 (377)
.+....+|++... ..+|+.+|.+|.+.+++.... +.--...+|+.+
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~------------------------------ 200 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQ------------------------------ 200 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC-CeEeEEECCCCC------------------------------
Confidence 4456677887632 457888898998877654331 111111222211
Q ss_pred cCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCC
Q psy5792 142 VDFHAGISDFILFSVNS--GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGT 217 (377)
Q Consensus 142 ~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~ 217 (377)
..++++... ...|..+++.+... ..+.. ........++.+.+.+|.++... ...|+.+++++.
T Consensus 201 --------~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 201 --------TAFYYTSYGERKPTLYKYNLYTGKK---EKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred --------cEEEEEEccCCCCEEEEEECCCCcE---EEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 124443222 23588888876544 22222 12223445677778788876543 358999999877
Q ss_pred CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 218 GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 218 ~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
..+.+.. ... .-..-.+.+.++.||++... ...|++.++++...+.+...+... .+++|..++|.++
T Consensus 268 ~~~~LT~-------~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLTQITN-------YPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYS 336 (419)
T ss_pred cEEEccc-------CCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEE
Confidence 6555543 111 11122566667788887543 348999999987665554432222 3789988888887
Q ss_pred ecCC-------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 296 ESGK-------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 296 d~g~-------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
.... ...|+.+++++...+.|...... ...+..+.++.|+++... +...+..++++|..++.+..
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~--~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTANGVN--QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCCCCc--CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 6421 15899999998887776654221 235666777888887651 34469999999877766654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00087 Score=66.25 Aligned_cols=243 Identities=11% Similarity=0.126 Sum_probs=137.3
Q ss_pred CccccccCCCCeEEEEeCC-----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCC
Q psy5792 18 VASTLKPQSGPFVYGVKTL-----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLD 87 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~-----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~ 87 (377)
.+|......+..+|+.... ..+|..+|++|. .+.+. .........++ .+++|+++...+ ..|+..+.+
T Consensus 154 ltg~~g~f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~ 231 (430)
T PRK00178 154 LTGIKGAFSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD 231 (430)
T ss_pred HhCCCccceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC
Confidence 3444444444455655432 235888999999 77775 33333455556 567887765443 468888844
Q ss_pred CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--CeEEE
Q psy5792 88 GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG--YDIMG 164 (377)
Q Consensus 88 g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~--~~I~~ 164 (377)
+...+.+....+ .... .++|+. ..|+++.... ..|..
T Consensus 232 ~g~~~~l~~~~g~~~~~-~~SpDG---------------------------------------~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 232 TGRREQITNFEGLNGAP-AWSPDG---------------------------------------SKLAFVLSKDGNPEIYV 271 (430)
T ss_pred CCCEEEccCCCCCcCCe-EECCCC---------------------------------------CEEEEEEccCCCceEEE
Confidence 333333321111 1111 112221 2344443221 24788
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav 242 (377)
+++++... ..+. ..........+.+.++.|+++.... ..|+++++++...+.+.. .. ......++
T Consensus 272 ~d~~~~~~---~~lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-------~~-~~~~~~~~ 338 (430)
T PRK00178 272 MDLASRQL---SRVT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-------VG-NYNARPRL 338 (430)
T ss_pred EECCCCCe---EEcc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-------CC-CCccceEE
Confidence 88876543 1111 1112233456677678888775433 479999987666555443 11 12223466
Q ss_pred eccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEE
Q psy5792 243 DWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 243 D~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~ 317 (377)
.+.++.|+++.... ..|.+.++++...+.+.... ......+.|....|+++... ...+|+.++++|...+.+.
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 77788898886543 36899999887666665432 22345788888889888643 2467899999987765543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00095 Score=66.39 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++.+... ..+....+ .....++.+.+.+|+++....+ .|+.+++++...+.+.. ......
T Consensus 243 ~L~~~dl~tg~~---~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--------~~~~~~ 309 (448)
T PRK04792 243 EIFVQDIYTQVR---EKVTSFPG--INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--------HRAIDT 309 (448)
T ss_pred EEEEEECCCCCe---EEecCCCC--CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--------CCCCcc
Confidence 488888876543 12222221 2235677887888988644333 69999998765554433 222344
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .....+.++.|...+||++... ...+|++.++++...+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 55666667778777543 35799999986655444322 2223456889988899998653 24588999998877666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
+...... ...++.+.++.|+++... ....++.++.+|...+.+..
T Consensus 389 lt~~~~d--~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 389 LTSTRLD--ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred ccCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 5443211 123566677888887651 23458889999887666643
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=56.76 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=36.1
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
++...+..|+||++|+.+++|||+|. ..+.|++++++|++
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~-~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDW-GLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeC-CCCEEEEEeCCCCC
Confidence 44556899999999999999999999 99999999999875
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0005 Score=64.10 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred CCCceEEEEEECCC-----CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC------------CCCCCcceEEEecc
Q psy5792 183 KVSLAAKVDFHAAE-----DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP------------TPVDQFTDIAVDWI 245 (377)
Q Consensus 183 ~~~~~~~l~~d~~~-----~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~------------~~~~~p~~iavD~~ 245 (377)
..+....+.+|... ..+|++|.....|..+++.......+....-...+ .......|||+.+.
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 34556677777644 58999998888888888764322222221000000 00123667888663
Q ss_pred ---CCeEEEEcCCCCEEEEEEcC----CC---------eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 246 ---AQNIYWSDPKENVIEVARLT----GQ---------YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 246 ---~~~lYwtd~~~~~I~~~~~~----g~---------~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
++.|||.--...++++...+ .. ..+.+.. ...+..|+++|+ +|.||+++.. ...|.+.+.+
T Consensus 139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~ 215 (287)
T PF03022_consen 139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPD 215 (287)
T ss_dssp STTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECC-CTEEEEEETT
T ss_pred CCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECC-CCcEEEecCC-CCeEEEEeCC
Confidence 45799998887788887652 11 1122322 124568999998 9999999985 7999999999
Q ss_pred C----CCeEEEEec-C-CCCceEEEEeC-CCCEEEEEEeCCCC
Q psy5792 310 G----KKQTILAQE-I-IMPIKDITLDR-KNKRVYWCYSVGSN 345 (377)
Q Consensus 310 G----~~~~~l~~~-~-~~~P~glalD~-~~~~LYw~d~~~~~ 345 (377)
+ .+.+++++. . +.+|.+++++. .++.||+... ..+
T Consensus 216 ~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn-rl~ 257 (287)
T PF03022_consen 216 GPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN-RLQ 257 (287)
T ss_dssp TSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE--S--
T ss_pred CCcCccchheeEEcCceeeccceeeeccccCceEEEEEC-cch
Confidence 8 456666665 3 89999999984 2689999876 443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00075 Score=66.84 Aligned_cols=243 Identities=12% Similarity=0.145 Sum_probs=137.4
Q ss_pred ccccccCCCCeEEEEeCC-----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCCC
Q psy5792 19 ASTLKPQSGPFVYGVKTL-----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLDG 88 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~-----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~g 88 (377)
+|..-...+.-.|+.... ...|...|++|. .+++. .......+.++ .+++|+++.... ..|+.++.++
T Consensus 160 tg~~g~f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~ 237 (433)
T PRK04922 160 TGVPGAFWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT 237 (433)
T ss_pred cCCCCcccceEEEEEEeCCCCCceEEEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC
Confidence 344334444444655542 246888999999 77775 33223344455 566788776433 4588888443
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEE
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGI 165 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~ 165 (377)
...+.+....+ ..... ++++. ..++++.. ....|..+
T Consensus 238 g~~~~l~~~~g~~~~~~-~SpDG---------------------------------------~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 238 GQRELVASFRGINGAPS-FSPDG---------------------------------------RRLALTLSRDGNPEIYVM 277 (433)
T ss_pred CCEEEeccCCCCccCce-ECCCC---------------------------------------CEEEEEEeCCCCceEEEE
Confidence 33333321111 11111 12211 23444321 11248888
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++++... ..+. .........++.+.+..|+++.... ..|+.+++++...+.+.. .+ ......++.
T Consensus 278 d~~~g~~---~~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-------~g-~~~~~~~~S 344 (433)
T PRK04922 278 DLGSRQL---TRLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-------QG-NYNARASVS 344 (433)
T ss_pred ECCCCCe---EECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-------CC-CCccCEEEC
Confidence 8776543 1111 1112234567777778888765433 369999987765555443 12 223456777
Q ss_pred ccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 244 WIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 244 ~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
+.++.|+++.... .+|.+.++++...+.+.... .....+..|....|+++.. +...+|+..+++|...+.+..
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 7788898875433 47999999877665554321 2345678887777777754 235689999999987766643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0021 Score=63.55 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=132.6
Q ss_pred CCCCeEEEEeCC-CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcC-CCCceEEEecC
Q psy5792 25 QSGPFVYGVKTL-SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINL-DGSNSTVLRNN 97 (377)
Q Consensus 25 ~~~~~ly~~d~~-~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~-~g~~~~~~~~~ 97 (377)
..+...|+.... ..+|..+|.+|. .+++. .........++ .+.+|+++.... ..|+..+. .|+. ..+...
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~ 238 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF 238 (427)
T ss_pred cccEEEEEEccCCccEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC
Confidence 334455555432 467999999999 77775 22223334455 566777765433 45888884 4443 333211
Q ss_pred CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--CeEEEEEcCCCCceee
Q psy5792 98 AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG--YDIMGIKYNKNESKVT 175 (377)
Q Consensus 98 ~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~--~~I~~~~l~~~~~~~~ 175 (377)
.+......++|+. ..|+++.... ..|..+++++...
T Consensus 239 ~g~~~~~~~SPDG---------------------------------------~~la~~~~~~g~~~Iy~~d~~~~~~--- 276 (427)
T PRK02889 239 KGSNSAPAWSPDG---------------------------------------RTLAVALSRDGNSQIYTVNADGSGL--- 276 (427)
T ss_pred CCCccceEECCCC---------------------------------------CEEEEEEccCCCceEEEEECCCCCc---
Confidence 1110011122322 1344432211 2377777765533
Q ss_pred EEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 176 QVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 176 ~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
..+.. .........+.+.+.+|+++... .-.|+.+++++...+.+.. .+ ......++.+.++.|+++.
T Consensus 277 ~~lt~--~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-------~g-~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 277 RRLTQ--SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-------TG-SYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EECCC--CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-------CC-CCcCceEECCCCCEEEEEE
Confidence 11111 11123345677778888876432 3378888887665555443 11 1223456776688888775
Q ss_pred CCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEE
Q psy5792 254 PKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 254 ~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~ 317 (377)
... ..|.+.++++...+.+.... ........|.+..|+++.. +....++.++++|...+.+.
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 543 37999999877665555432 2356788988888888753 22456888899988776654
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=60.92 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=57.0
Q ss_pred eeEEEcCCCCeEEEEecC----------------CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 281 SALAVDPESGYLFWSESG----------------KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 281 ~~iavdp~~g~lywtd~g----------------~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
.+++|++.+|.|||||.. .++++.+.+......+++... +..|+|+++.+.+..|.+++. ..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et-~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAET-GR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEG-GG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEec-cC
Confidence 368999877999999942 246899999987777777776 999999999999999999999 99
Q ss_pred CeEEEEEccC
Q psy5792 345 NVLESMDYSG 354 (377)
Q Consensus 345 ~~i~~~~~~G 354 (377)
.+|.+.-+.|
T Consensus 79 ~Ri~rywl~G 88 (89)
T PF03088_consen 79 YRILRYWLKG 88 (89)
T ss_dssp TEEEEEESSS
T ss_pred ceEEEEEEeC
Confidence 9999998876
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0037 Score=61.91 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++.+... ..+.... ....+.++.+.+++|+++-... ..|+.+++++...+.+.. ......
T Consensus 229 ~l~~~dl~~g~~---~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~--------~~~~~~ 295 (433)
T PRK04922 229 AIYVQDLATGQR---ELVASFR--GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN--------HFGIDT 295 (433)
T ss_pred EEEEEECCCCCE---EEeccCC--CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc--------CCCCcc
Confidence 488888866533 2222222 2234567888788888764333 379999998765544432 222234
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .......++.|...+|+++... ....|+..++++...+.
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT 374 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence 56777767778776432 34699999887655444432 2334578999988999988642 23479999998777665
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
+.... .....++.+.++.|+++... ....|+.++.+|+..+.+..
T Consensus 375 Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 375 LTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 54431 22345677677778887651 34579999999877666643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0045 Score=55.44 Aligned_cols=265 Identities=15% Similarity=0.138 Sum_probs=146.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.++++++.++.|+... ..+.|...+++.. ...+. ........+.+. .+..+++-..++.|...+ .+++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEEEe--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 4577888888766665443 4778888888766 34332 222233477773 333444444467888888 444444
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+.. +++ ..++++....+.|..+++...
T Consensus 87 ~~~~~~~~~i~~~~~-~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 87 RTLTGHTSYVSSVAF-SPD----------------------------------------GRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEEeccCCcEEEEEE-cCC----------------------------------------CCEEEEecCCCeEEEEECCCc
Confidence 44432221 333332 111 124444433345888877633
Q ss_pred CceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 171 ESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
.. ...+. ....+..+++++.+..++.. ...+.|...++.......... ..-..+..+++.+.++.|
T Consensus 126 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KC-----LTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGKCVATLT-------GHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EE-----EEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEccccccceeEe-------cCccccceEEECCCcCEE
Confidence 22 11122 23457888888864444444 346788888886333222222 223357888888765566
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEE
Q psy5792 250 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITL 329 (377)
Q Consensus 250 Ywtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glal 329 (377)
+.+.. .+.|.+.++........+......+..++++|. +.++.+.. ....|...++........+...-..+..+++
T Consensus 193 ~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 193 LSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS-EDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred EEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc-CCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence 66655 778999998754333333222346789999986 55555543 2467777777643322222222245677888
Q ss_pred eCCCCEEEEEE
Q psy5792 330 DRKNKRVYWCY 340 (377)
Q Consensus 330 D~~~~~LYw~d 340 (377)
++.+..|+.+.
T Consensus 270 ~~~~~~l~~~~ 280 (289)
T cd00200 270 SPDGKRLASGS 280 (289)
T ss_pred CCCCCEEEEec
Confidence 75544444433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0064 Score=60.17 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=138.5
Q ss_pred CccccccCCCCeEEEEeCC----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcCCC
Q psy5792 18 VASTLKPQSGPFVYGVKTL----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINLDG 88 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~~g 88 (377)
.+|.--...+...|+.... ..+|+.+|.||. .+++. .+.......++ .+.+|.++... ...|+..+.++
T Consensus 155 ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~ 232 (429)
T PRK03629 155 LTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 232 (429)
T ss_pred hcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 3444444445556666543 347999999999 77775 33333445566 55677665432 24577777433
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEEE
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMGI 165 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~~ 165 (377)
...+.+....+ .... ..+|+. ..|+++....| .|..+
T Consensus 233 G~~~~l~~~~~~~~~~-~~SPDG---------------------------------------~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 233 GAVRQVASFPRHNGAP-AFSPDG---------------------------------------SKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CCeEEccCCCCCcCCe-EECCCC---------------------------------------CEEEEEEcCCCCcEEEEE
Confidence 33232221111 1111 112221 23554432111 37777
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++++... ..+. ..........+.+.++.|+++.... -.|+++++++...+.+.. ........++.
T Consensus 273 d~~tg~~---~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------~~~~~~~~~~S 339 (429)
T PRK03629 273 DLASGQI---RQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------EGSQNQDADVS 339 (429)
T ss_pred ECCCCCE---EEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------CCCCccCEEEC
Confidence 7766533 1121 1222445677788788886654332 389999998766555543 22234456777
Q ss_pred ccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 244 WIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 244 ~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
+.++.|+++... ...|.+.++++...+.+.... .-....+.|....|+++... ....++..+++|...+.+..
T Consensus 340 pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 340 SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 767788776543 346888999887666555332 12345678888888887642 24568888999988877643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0099 Score=58.82 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++++... ..+.... ......++.+.+.+|+++....+ .|+.+++++...+.+.. .-....
T Consensus 224 ~i~i~dl~~G~~---~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------~~~~~~ 290 (429)
T PRK03629 224 ALVIQTLANGAV---RQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------GRSNNT 290 (429)
T ss_pred EEEEEECCCCCe---EEccCCC--CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--------CCCCcC
Confidence 477777766533 2222222 22345678888889998754333 69999998765555443 222345
Q ss_pred eEEEeccCCeEEEEc-C-CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSD-P-KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd-~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++- . ...+|++.++++...+.+... .......++.|...+|+++... ....|+..++++...+.
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 567776677776653 3 234899999988765555432 2334567889988888887532 24578888998777666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
|.... .-...++.+.+..|+++... ....++.++++|...+++.
T Consensus 370 Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 370 LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 55331 11134566777888887651 2345888899988777664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0056 Score=60.03 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=126.1
Q ss_pred CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEc-CCCCceEEEecCCC-ceeEEeeecC
Q psy5792 37 SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVN 109 (377)
Q Consensus 37 ~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~ 109 (377)
...|..+|.+|. .+++. .........++ .+.+|+|+.... ..|+.++ .+|+... +....+ ..... ++++
T Consensus 169 ~~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~-~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPA-FSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceE-ECCC
Confidence 457999999998 77775 22222344445 667788876543 4677777 4443322 221111 11111 1221
Q ss_pred CCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCceeeEEEEecCCCCce
Q psy5792 110 SGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS--GYDIMGIKYNKNESKVTQVLGPLSKVSLA 187 (377)
Q Consensus 110 ~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (377)
. ..|+++... ...|..+++++... ..+.. .....
T Consensus 245 g---------------------------------------~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~~--~~~~~ 280 (417)
T TIGR02800 245 G---------------------------------------SKLAVSLSKDGNPDIYVMDLDGKQL---TRLTN--GPGID 280 (417)
T ss_pred C---------------------------------------CEEEEEECCCCCccEEEEECCCCCE---EECCC--CCCCC
Confidence 1 134443321 12377777765533 11111 11112
Q ss_pred EEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CEEEEEE
Q psy5792 188 AKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NVIEVAR 263 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~I~~~~ 263 (377)
...++.+.+++|+++.... ..|+.+++++...+.+.. ........++.+.++.|+++.... .+|.+++
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~--------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF--------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 2345666677888765433 379999998766555443 223455667777788888887653 4789999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEEE
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTIL 316 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~l 316 (377)
+++...+.+... ......++.|..++|+++.... ...++....+|...+.+
T Consensus 353 ~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 353 LDGGGERVLTDT--GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCCCeEEccCC--CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 988666555432 2234557888888898887532 34677777888665543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.01 Score=58.20 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++..... ..+.... ....+.++.+.++.|+++.... ..|+..++++...+.+.. ......
T Consensus 215 ~i~v~d~~~g~~---~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~ 281 (417)
T TIGR02800 215 EIYVQDLATGQR---EKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--------GPGIDT 281 (417)
T ss_pred EEEEEECCCCCE---EEeecCC--CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--------CCCCCC
Confidence 477777765533 1222111 2344567777788898875433 479999988655444432 111122
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .......++.|...+|+++.... ..+|..+++++...+.
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~ 360 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV 360 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE
Confidence 34555556778776432 34799999987765544432 34456778999888999987532 3478899988766555
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCC--CeEEEEEccCCceEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGS--NVLESMDYSGGSKMQL 360 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~--~~i~~~~~~G~~~~~~ 360 (377)
+.... .....++.+.++.|+++.. .. ..++.++.+|...+.+
T Consensus 361 l~~~~--~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 361 LTDTG--LDESPSFAPNGRMILYATT-RGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred ccCCC--CCCCceECCCCCEEEEEEe-CCCcEEEEEEECCCceeeEC
Confidence 54321 2233456667788988877 43 3567777776544433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.012 Score=58.04 Aligned_cols=185 Identities=10% Similarity=0.060 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++++... ..+.... ......++.+.+++|+++-... ..|+.+++++...+.+.. ......
T Consensus 224 ~l~~~~l~~g~~---~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 290 (430)
T PRK00178 224 RIFVQNLDTGRR---EQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN--------HPAIDT 290 (430)
T ss_pred EEEEEECCCCCE---EEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc--------CCCCcC
Confidence 477788876533 2221111 2233567777788888765333 379999998766554433 122233
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.||++... ...|++.++++...+.+... .......++.|...+|+++.... ...|+..++++...+.
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 44666667778776433 34799999877655444332 22234567889889999987432 3478999998877666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
+.... ......+.+.++.|+++... +...|+.++.+|...+.+.
T Consensus 370 lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 370 LTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 65432 22234677777888888651 3357999999987665553
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.012 Score=58.30 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+.... ....+.++.+.+++|+++-.. ...|+.+++++...+.+.. ......
T Consensus 221 ~I~~~dl~~g~~---~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 287 (427)
T PRK02889 221 VVYVHDLATGRR---RVVANFK--GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ--------SSGIDT 287 (427)
T ss_pred EEEEEECCCCCE---EEeecCC--CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC--------CCCCCc
Confidence 477788876533 1222122 234567788878888876433 3479999988766555432 122233
Q ss_pred eEEEeccCCeEEEEcC--CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++.. +...|++.++++...+.+...+ ......++.|...+|+++... ....|+..++++...+.
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 4566666777777633 2457888888876544443221 223456889988898887632 23478999988776666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEe-CCCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYS-VGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~-~~~~~i~~~~~~G~~~~~~~ 361 (377)
+.... .....++.+.++.|+++-. .+...+..++.+|...+.+.
T Consensus 367 lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 367 LTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 55432 2234577777888888764 13346888999987666664
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0089 Score=54.94 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=127.8
Q ss_pred CCCCceEEEEEE-CCeEEEEcCCCCceEEEcCC-----CCc--eEEEec------CCC-ceeEEeeecCCCCcccCCCcC
Q psy5792 56 PDAAQVVAAVFY-KGRIIYSDANDGNIRSINLD-----GSN--STVLRN------NAG-ISDFILFSVNSGYDIMGIKYN 120 (377)
Q Consensus 56 ~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~-----g~~--~~~~~~------~~~-p~~i~v~~~~~~~~~~~~~C~ 120 (377)
+.+.+||||++. .+.++++|..++.....+.+ |.. +.+-.. ... |+|+.+...+.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~---------- 89 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT---------- 89 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------
Confidence 678899999995 78899999988888877744 322 111111 111 55554421110
Q ss_pred CCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc--CCCCceeeEEEEecCCC---CceEEEEEE--
Q psy5792 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY--NKNESKVTQVLGPLSKV---SLAAKVDFH-- 193 (377)
Q Consensus 121 ~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l--~~~~~~~~~~~~~~~~~---~~~~~l~~d-- 193 (377)
.-+...+. .++..||+.+.... |..-.. +.... +.....+... .--.|+++-
T Consensus 90 --------F~vt~~g~---------~~~a~Fif~tEdGT--isaW~p~v~~t~~--~~~~~~~d~s~~gavYkGLAi~~~ 148 (336)
T TIGR03118 90 --------FVVSGEGI---------TGPSRFLFVTEDGT--LSGWAPALGTTRM--TRAEIVVDASQQGNVYKGLAVGPT 148 (336)
T ss_pred --------eEEcCCCc---------ccceeEEEEeCCce--EEeecCcCCcccc--cccEEEEccCCCcceeeeeEEeec
Confidence 00000000 01234666665444 655442 22210 0111111111 112344443
Q ss_pred CCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe-cccc-CCCCCCCCcceEEEeccCCeEEEEcC-------------CCCE
Q psy5792 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIE-YVET-GDPTPVDQFTDIAVDWIAQNIYWSDP-------------KENV 258 (377)
Q Consensus 194 ~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~-~~~~-~~~~~~~~p~~iavD~~~~~lYwtd~-------------~~~~ 258 (377)
...+.||-+|..+++|-+.+- +....... .... ..+.+. .|.+|..- .++||+|-. ..+-
T Consensus 149 ~~~~~LYaadF~~g~IDVFd~--~f~~~~~~g~F~DP~iPagy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~ 223 (336)
T TIGR03118 149 GGGDYLYAANFRQGRIDVFKG--SFRPPPLPGSFIDPALPAGY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGY 223 (336)
T ss_pred CCCceEEEeccCCCceEEecC--ccccccCCCCccCCCCCCCC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcce
Confidence 446899999999999987743 33322211 0000 001111 37777664 899999842 2368
Q ss_pred EEEEEcCCCeEEEEee-CCCCCceeEEEcCC-----CCeEEEEecCCCCeEEEEecC-CCCeEEE
Q psy5792 259 IEVARLTGQYRYVLIS-GGVDQPSALAVDPE-----SGYLFWSESGKIPLIARAGLD-GKKQTIL 316 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~-----~g~lywtd~g~~~~I~r~~ld-G~~~~~l 316 (377)
|-+++++|+..+.+.+ ..|..|+|||+-|. .|.|-+-+.| ..+|...+.. |...-.|
T Consensus 224 VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFG-DG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 224 VNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFG-DGTINAYDPQSGAQLGQL 287 (336)
T ss_pred EEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecC-CceeEEecCCCCceeeee
Confidence 9999999998876654 45999999999874 6899999988 5899999865 5543333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.023 Score=56.19 Aligned_cols=188 Identities=7% Similarity=0.022 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEE--EcCC---CCcEEEEeccccCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRT--HRDG---TGRENIIEYVETGDPTP 233 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~--~~~G---~~~~~i~~~~~~~~~~~ 233 (377)
.|..+++++... ..+....+ ...+.++.+.+.+|.++.... ..|+.. ++++ ...+.+.. ..
T Consensus 212 ~I~~~~l~~g~~---~~lt~~~g--~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~ 279 (428)
T PRK01029 212 KIFLGSLENPAG---KKILALQG--NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EA 279 (428)
T ss_pred eEEEEECCCCCc---eEeecCCC--CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-------CC
Confidence 488888887654 23332222 234567777788888876432 256654 3332 22333433 22
Q ss_pred CCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCC--CeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEec
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTG--QYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGL 308 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~l 308 (377)
.......++.+.++.|+++... ..+|++.++++ ...+.+.. ........+..|...+|+++... ....|+..++
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 2223445777767777776432 34788888864 22333322 22344567889988888887532 2468999999
Q ss_pred CCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe-CCCCeEEEEEccCCceEEEEe
Q psy5792 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS-VGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 309 dG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~-~~~~~i~~~~~~G~~~~~~~~ 362 (377)
++...+.+... -......+..+.++.|+++.. .....|+.++++|+..+.+..
T Consensus 359 ~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 359 ATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 88877776654 233455677767778887644 145689999999887776654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0017 Score=59.18 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=121.0
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE-EcCCCCEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW-SDPKENVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw-td~~~~~I~~~~ 263 (377)
.+..++.|++..+.||-+-...-.|..++++|...+++-- .+++.|++|++= +++.|. +|....++..+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-------~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-------TGFSDPETIEYI--GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-------cccCChhHeEEe--cCCEEEEEehhcceEEEEE
Confidence 4588999999999999876666789999999988777766 688899999885 666665 577778888877
Q ss_pred cCCCeEEE--------EeeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--------CCCCce
Q psy5792 264 LTGQYRYV--------LISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--------IIMPIK 325 (377)
Q Consensus 264 ~~g~~~~~--------l~~~~--~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--------~~~~P~ 325 (377)
++...... |-... -..-.|+|-||.++.+|++-....-+|+..+.+-+.-..-+.. .+....
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 76542211 11111 1234799999999999999875556888876543221111110 134567
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|+..|..++.|++... .++.+..++.+|.-+..+.
T Consensus 237 gl~~~~~~~~LLVLS~-ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 237 GLEFNAITNSLLVLSD-ESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred cceecCCCCcEEEEec-CCceEEEEecCCCeeeeEE
Confidence 9999999999999999 9999999999987544443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.009 Score=57.28 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=106.7
Q ss_pred eEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECC---------eEEEEcCCC--Cc--eEEEc-CCCCceEE
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKG---------RIIYSDAND--GN--IRSIN-LDGSNSTV 93 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~---------~ly~td~~~--~~--I~~~~-~~g~~~~~ 93 (377)
+|.-++- .+-+..+|++|+ ++.+- ...|..+++..+ -+..+|..+ ++ |++++ .+|.-..+
T Consensus 70 lIigTdK-~~GL~VYdL~Gk~lq~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 70 LIIGTDK-KGGLYVYDLDGKELQSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp EEEEEET-TTEEEEEETTS-EEEEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred eEEEEeC-CCCEEEEcCCCcEEEeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4444444 466999999999 77662 346776666222 245666543 23 56666 34432221
Q ss_pred ------EecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 94 ------LRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 94 ------~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
+..... |+|+++|+.... ..+..+..+..|.+..+.
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~-------------------------------------g~~ya~v~~k~G~~~Qy~ 187 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPST-------------------------------------GALYAFVNGKDGRVEQYE 187 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT---------------------------------------EEEEEEETTSEEEEEE
T ss_pred CCCCcccccccccceeeEEeecCCC-------------------------------------CcEEEEEecCCceEEEEE
Confidence 112333 788888875321 013333333445676666
Q ss_pred cC--CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEeccccCCCCCC-CCcceEE
Q psy5792 167 YN--KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYVETGDPTPV-DQFTDIA 241 (377)
Q Consensus 167 l~--~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~~~~~~~~~-~~p~~ia 241 (377)
+. +.+.-....+-.+...+.+.|+.+|...+.||+.+. ...|++...+ +.....++....+ ..+ ..++||+
T Consensus 188 L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g---~~l~aDvEGla 263 (381)
T PF02333_consen 188 LTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADG---DGLVADVEGLA 263 (381)
T ss_dssp EEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSS---SSB-S-EEEEE
T ss_pred EEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccc---cccccCccceE
Confidence 63 222100122223444568999999999999999995 5799999886 3333333321111 223 4589999
Q ss_pred Eec---cCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 242 VDW---IAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 242 vD~---~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
+=. -.+.|..+++..++..+.+..+..
T Consensus 264 ly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 264 LYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 832 246799999999999999988754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.024 Score=56.04 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=128.0
Q ss_pred cccccCCCCeEEEEeCC----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCCCCc
Q psy5792 20 STLKPQSGPFVYGVKTL----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLDGSN 90 (377)
Q Consensus 20 ~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~g~~ 90 (377)
|.--...+...|+.... ..+|+..|.||. .+++. .........++ .+.+|.++...+ ..|+..+..+..
T Consensus 162 g~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 162 AIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred CCCCccCCEEEEEEEEcCCCceEEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 33333333334666543 258888999999 77765 32333455566 566787765433 358777843322
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEEEEc
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMGIKY 167 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~~~l 167 (377)
.+.+....+ .... .++|+. ..|+++....| .|..+++
T Consensus 240 ~~~l~~~~g~~~~~-~wSPDG---------------------------------------~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 240 RKVVASFRGHNGAP-AFSPDG---------------------------------------SRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred eEEEecCCCccCce-eECCCC---------------------------------------CEEEEEEecCCcEEEEEEEC
Confidence 222221111 1111 112221 23544432222 3566666
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
++... ..+. .........++.+.+..|+++... .-.|+.++.++...+.+ . .. . ...++.+.
T Consensus 280 ~~~~~---~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-------~~-~--~~~~~SpD 343 (429)
T PRK01742 280 NGGTP---SQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-------GR-G--YSAQISAD 343 (429)
T ss_pred CCCCe---Eeec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-------CC-C--CCccCCCC
Confidence 55433 1111 122234567788878888876533 33788888876554433 2 11 1 23456666
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC-eEEEEecCCCCeEEEE
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP-LIARAGLDGKKQTILA 317 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~-~I~r~~ldG~~~~~l~ 317 (377)
++.|+++.. ..|.+.++.+...+.+... . .-...++.|....|+++...... .++..+++|...+.+.
T Consensus 344 G~~ia~~~~--~~i~~~Dl~~g~~~~lt~~-~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 344 GKTLVMING--DNVVKQDLTSGSTEVLSST-F-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCEEEEEcC--CCEEEEECCCCCeEEecCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 777877754 4577788876654444332 2 23567789988888887643233 3455678898877764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.037 Score=54.74 Aligned_cols=179 Identities=10% Similarity=0.117 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+....+ .....++.+.+.+|+++....+ .|+.+++++...+.+.. .-....
T Consensus 229 ~i~i~dl~tg~~---~~l~~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 295 (429)
T PRK01742 229 QLVVHDLRSGAR---KVVASFRG--HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS--------GAGNNT 295 (429)
T ss_pred EEEEEeCCCCce---EEEecCCC--ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc--------CCCCcC
Confidence 477778765533 22222222 2345778887888888753333 68888887765554433 222355
Q ss_pred eEEEeccCCeEEEEcC--CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 239 DIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
..++.+.+..|+++.. +..+|+..+.++...+.+ .... ...++.|.+.+|+++.. ..|.+.++.+...+.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING---DNVVKQDLTSGSTEVL 368 (429)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEe
Confidence 6777777777777643 344788888877655444 2211 34578888888888753 4677788776554444
Q ss_pred EecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 317 AQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 317 ~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
... . .-...++.+.++.|+++... ....++.++.+|...+++.
T Consensus 369 t~~-~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 369 SST-F-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred cCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 332 1 12345677777788887541 2234555678887777664
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0059 Score=53.90 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEE--cCC---CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTH--RDG---TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~--~~G---~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
+.-+-|++.|.....+|+.|..+..|-..+ ..+ +++++++. .+...+.+-..|.|+++|- .|+||++-.+.++
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d-lrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD-LRKSQPFESLEPDGMTIDT-EGNLYVATFNGGT 234 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEE-eccCCCcCCCCCCcceEcc-CCcEEEEEecCcE
Confidence 334567788877899999999988995555 433 35677765 2222223334599999995 8999999999999
Q ss_pred EEEEEcCCCe
Q psy5792 259 IEVARLTGQY 268 (377)
Q Consensus 259 I~~~~~~g~~ 268 (377)
|++.++....
T Consensus 235 V~~~dp~tGK 244 (310)
T KOG4499|consen 235 VQKVDPTTGK 244 (310)
T ss_pred EEEECCCCCc
Confidence 9999986543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.029 Score=56.93 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=85.5
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe---------EEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY---------RYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~---------~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
.+|+|+++.+.++.+|.++...+.+.+++..... +.+++.. -...|...++|+ +|+.|.|=.- .++|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~-dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFL-DSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEee-ccee
Confidence 3699999999999999999999999999986522 2333332 134699999997 6889988754 4677
Q ss_pred EEEecC-------CCCeEEEEec-C-CCCc------eEEEEeCCCCEEEEEEeC-----------CCCeEEEEEccCCce
Q psy5792 304 ARAGLD-------GKKQTILAQE-I-IMPI------KDITLDRKNKRVYWCYSV-----------GSNVLESMDYSGGSK 357 (377)
Q Consensus 304 ~r~~ld-------G~~~~~l~~~-~-~~~P------~glalD~~~~~LYw~d~~-----------~~~~i~~~~~~G~~~ 357 (377)
-+.+++ |.....++.+ + -.+| .|=+.+..++.|+....- ....-+-+++.|...
T Consensus 399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM 478 (635)
T PRK02888 399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKM 478 (635)
T ss_pred EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCee
Confidence 777765 3433334443 1 1223 333336666666654320 223455688886644
Q ss_pred EEEEecCCCCCcc
Q psy5792 358 MQLKLSSNIKNAL 370 (377)
Q Consensus 358 ~~~~~~~~~~~p~ 370 (377)
+.+.....+++|+
T Consensus 479 ~lv~d~p~~~EPH 491 (635)
T PRK02888 479 KLVHDGPTFAEPH 491 (635)
T ss_pred EEEecCCCCCCCc
Confidence 4444455577774
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.086 Score=52.14 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=79.6
Q ss_pred EEEEEECCCCEEEEEEcCCC--cEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEE
Q psy5792 188 AKVDFHAAEDYIYWVDIDHG--TISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEV 261 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~ 261 (377)
...++.+.+..|+++....+ .|+.+++++. ..+.+.. ........+..+.++.|+++... ...|.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v 355 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICV 355 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--------CCCCccceeECCCCCEEEEEEcCCCCcEEEE
Confidence 34567777787887654333 6888887642 2333322 22233455677777888887543 357999
Q ss_pred EEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 262 ARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 262 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.++++...+.+... .......+..|....|+++.. .....|+..++++...+.+..
T Consensus 356 ~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 356 YDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred EECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 99998877666543 234567788887778887643 224689999999877766654
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=2.1e-05 Score=48.56 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=21.3
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
|..+||+|+|+|++.++++. +.||.
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCE
Confidence 67789999999999999887 67753
|
... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.02 Score=50.63 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=61.5
Q ss_pred eCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe--cCC---CCeEEEEec------CCCCceEEEEeCCCCEEEEEEeC
Q psy5792 274 SGGVDQPSALAVDPESGYLFWSESGKIPLIARAG--LDG---KKQTILAQE------IIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 274 ~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~--ldG---~~~~~l~~~------~~~~P~glalD~~~~~LYw~d~~ 342 (377)
.+.+.-|.||+-|.....+|++|.- +..|...+ ..+ ++++++..- +-..|.|++||. ++.||++-.
T Consensus 154 ~~~v~IsNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~- 230 (310)
T KOG4499|consen 154 WNCVGISNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATF- 230 (310)
T ss_pred ehhccCCccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEe-
Confidence 3446678999999999999999974 67885555 333 466666542 245699999995 899999999
Q ss_pred CCCeEEEEEccCCc
Q psy5792 343 GSNVLESMDYSGGS 356 (377)
Q Consensus 343 ~~~~i~~~~~~G~~ 356 (377)
..++|++++...+.
T Consensus 231 ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGK 244 (310)
T ss_pred cCcEEEEECCCCCc
Confidence 99999999988553
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.083 Score=51.10 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCE------EEEEEc---------------CCC------eEEEEe-----eCCCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENV------IEVARL---------------TGQ------YRYVLI-----SGGVDQ 279 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~------I~~~~~---------------~g~------~~~~l~-----~~~~~~ 279 (377)
-++.+|.|++.++.++.||.++..... +.+... +|. ....+. .....-
T Consensus 236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 236 YGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred eccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccc
Confidence 478889999999999999999887521 111111 111 111111 011233
Q ss_pred ceeEEEcCC------CCeEEEEecCCCCeEEEEecCCCCeE---EEEecC-CCCceEEEEeCCCCEEEEEEeCC-CCeEE
Q psy5792 280 PSALAVDPE------SGYLFWSESGKIPLIARAGLDGKKQT---ILAQEI-IMPIKDITLDRKNKRVYWCYSVG-SNVLE 348 (377)
Q Consensus 280 P~~iavdp~------~g~lywtd~g~~~~I~r~~ldG~~~~---~l~~~~-~~~P~glalD~~~~~LYw~d~~~-~~~i~ 348 (377)
|.||++-.- ++.+|++..+ .-.+.+.+.+|..+. ..+..+ -..|.+++++ ..+-||+++. . .++|.
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hg-sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D-~~~g~i~ 392 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHG-SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTD-QGDGRIL 392 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeec-ceeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeec-CCCCeEE
Confidence 578888521 2688998876 346777888887333 333321 2589999998 4688888888 6 66999
Q ss_pred EEEccC
Q psy5792 349 SMDYSG 354 (377)
Q Consensus 349 ~~~~~G 354 (377)
|+.+.+
T Consensus 393 Rv~~~~ 398 (399)
T COG2133 393 RVSYAG 398 (399)
T ss_pred EecCCC
Confidence 998875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.088 Score=46.90 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=106.1
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.+.|...++..... ...+ . .....+..+.+.+. +.++++....+.|...++.......... .....+.
T Consensus 72 ~~~i~i~~~~~~~~--~~~~-~-~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~ 139 (289)
T cd00200 72 DKTIRLWDLETGEC--VRTL-T-GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLR-------GHTDWVN 139 (289)
T ss_pred CCeEEEEEcCcccc--eEEE-e-ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEec-------cCCCcEE
Confidence 34577777765322 1111 1 12235778888875 4566665557888888887322222222 2233578
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.+++++. +.++.+....+.|.+.++........+......+..++++|.+..++.+.. ...|...++..........
T Consensus 140 ~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecchh
Confidence 8899865 444445445678999988744333333333446789999986667777753 4677777776433322221
Q ss_pred cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 319 EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 319 ~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
.....+..+++++. +.++.+.. ..+.|...++..
T Consensus 217 ~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~i~~~~~ 250 (289)
T cd00200 217 GHENGVNSVAFSPD-GYLLASGS-EDGTIRVWDLRT 250 (289)
T ss_pred hcCCceEEEEEcCC-CcEEEEEc-CCCcEEEEEcCC
Confidence 21236678888755 56666655 577788777763
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00091 Score=38.87 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 321 IMPIKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 321 ~~~P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
+..|.||++| .++.||++|. ++++|..
T Consensus 1 f~~P~gvav~-~~g~i~VaD~-~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADS-GNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEEC-CCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEEC-CCCEEEE
Confidence 4689999999 8999999999 9999875
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00065 Score=39.48 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
..|.|||+| .+++||++|..+++|.++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 469999999 689999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.18 Score=46.26 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=114.1
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCc--
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGI-- 100 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p-- 100 (377)
+.++.|++|-.++ |+.+|...- .+.+-+........++.+.+++.|++|+.+ .+..+| .+-+.+.+......|
T Consensus 95 se~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 95 SEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred cccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCC
Confidence 4568999986655 777776555 444422233355788899999999999954 456667 555554443321112
Q ss_pred --eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 101 --SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 101 --~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
..+++.. ...+++..++ -+.-++...... .++
T Consensus 173 d~~~v~ISG------------------------------------------n~AYvA~~d~-GL~ivDVSnp~s---Pvl 206 (370)
T COG5276 173 DTHDVAISG------------------------------------------NYAYVAWRDG-GLTIVDVSNPHS---PVL 206 (370)
T ss_pred CceeEEEec------------------------------------------CeEEEEEeCC-CeEEEEccCCCC---CeE
Confidence 1222200 1233332221 044444433221 111
Q ss_pred EecCCCC-ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCCCCCCCcceE---EEeccCCeEEEEc
Q psy5792 179 GPLSKVS-LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDPTPVDQFTDI---AVDWIAQNIYWSD 253 (377)
Q Consensus 179 ~~~~~~~-~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~~~p~~i---avD~~~~~lYwtd 253 (377)
..--+.+ ...++.. ..++.|.++... .+.-.+.++-. ...+-. -+...|.++ +|- ....|++|
T Consensus 207 i~~~n~g~g~~sv~v--sdnr~y~vvy~e-gvlivd~s~~ssp~~~gs-------yet~~p~~~s~v~Vs--~~~~Yvad 274 (370)
T COG5276 207 IGSYNTGPGTYSVSV--SDNRAYLVVYDE-GVLIVDVSGPSSPTVFGS-------YETSNPVSISTVPVS--GEYAYVAD 274 (370)
T ss_pred EEEEecCCceEEEEe--cCCeeEEEEccc-ceEEEecCCCCCceEeec-------cccCCcccccceecc--cceeeeec
Confidence 1111111 2333333 378888888654 44456666533 233322 233345555 554 78899998
Q ss_pred CCCC--EEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC
Q psy5792 254 PKEN--VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 254 ~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g 298 (377)
...+ .|-..++.+.+..-=+.....+-++|++ ..+++|++|..
T Consensus 275 ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn 319 (370)
T COG5276 275 GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN 319 (370)
T ss_pred cccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCC
Confidence 7654 5666676666543333333446788888 68999999964
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.19 Score=45.81 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=115.0
Q ss_pred EEEEEeCCCC--eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 151 FILFSVNSGY--DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 151 ~l~~s~~~~~--~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
.|+-+.+.-| .|++++++.... ....++...--..|+++- +++||..-+..+..+..+.+.-....-+.
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~---~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~---- 127 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKV---LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP---- 127 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSE---EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE----
T ss_pred EEEEeCCCCCcEEEEEEECCCCcE---EEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe----
Confidence 4666654433 588998887644 233445544446677776 89999999999999999997422222222
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EE-EEee-CC--CCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RY-VLIS-GG--VDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~-~l~~-~~--~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
--++-+||+-| +..||.+|.. .+|...++..-. .+ +-+. .+ ...-+.+.. .+|.||=--|. ...|
T Consensus 128 ----y~~EGWGLt~d--g~~Li~SDGS-~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~-td~I 197 (264)
T PF05096_consen 128 ----YPGEGWGLTSD--GKRLIMSDGS-SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQ-TDRI 197 (264)
T ss_dssp -----SSS--EEEEC--SSCEEEE-SS-SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETT-SSEE
T ss_pred ----cCCcceEEEcC--CCEEEEECCc-cceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCC-CCeE
Confidence 23578999988 7889999884 688888886532 22 2222 21 233344544 48999888885 7999
Q ss_pred EEEecCCCCeEEEEec-C--------------CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 304 ARAGLDGKKQTILAQE-I--------------IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~-~--------------~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.+++..-....-.+.- . ..-.||||.|+.++++|++-. .=.+++.+.+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK-~Wp~lyeV~l~ 261 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK-LWPKLYEVKLV 261 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET-T-SEEEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC-CCCceEEEEEE
Confidence 9999875554443321 1 123799999999999999988 77788888765
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.29 Score=47.09 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCCCCcceEEE--eccCCeEEEE-cCCCCEEEEEEcC----CCeEEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 232 TPVDQFTDIAV--DWIAQNIYWS-DPKENVIEVARLT----GQYRYVLISG--GVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 232 ~~~~~p~~iav--D~~~~~lYwt-d~~~~~I~~~~~~----g~~~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..+..|+|+++ ++.++.+|.. ....+++....+. |.....++.. -..+|.|+++|...|+||+.+. ..-
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE--~~G 230 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE--DVG 230 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET--TTE
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC--ccE
Confidence 45667999997 4456666654 3344677665552 3333333332 2358999999999999999996 479
Q ss_pred EEEEecCC---CCeEEEEec---CC-CCceEEEEeC---CCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 303 IARAGLDG---KKQTILAQE---II-MPIKDITLDR---KNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 303 I~r~~ldG---~~~~~l~~~---~~-~~P~glalD~---~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
|++...+. ..++.+... .+ .-.-||+|-+ ..+.|..++. +.++....+..|.+
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ-G~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ-GDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG-GGTEEEEEESSTT-
T ss_pred EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC-CCCeEEEEecCCCC
Confidence 99998873 334444221 12 3577999943 2467889999 88888888888753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.099 Score=48.24 Aligned_cols=183 Identities=9% Similarity=0.023 Sum_probs=110.0
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-----CCCcEEEEeccccCCCCCCCCcceEEEeccCCe--------
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-----GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN-------- 248 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-----G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~-------- 248 (377)
.++.++-||++.+ .+.++++|..++.....+.+ |.....++.............|.|+.+......
T Consensus 20 p~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 3567899999998 67888899888877666666 433333333111111122346999998743321
Q ss_pred -----EEEEcCCCCEEEEEEcCC--C---eEEEEeeCC--CCCceeEEEcCC--CCeEEEEecCCCCeEEEEecCCCCeE
Q psy5792 249 -----IYWSDPKENVIEVARLTG--Q---YRYVLISGG--VDQPSALAVDPE--SGYLFWSESGKIPLIARAGLDGKKQT 314 (377)
Q Consensus 249 -----lYwtd~~~~~I~~~~~~g--~---~~~~l~~~~--~~~P~~iavdp~--~g~lywtd~g~~~~I~r~~ldG~~~~ 314 (377)
||.|+. ++|..-++.- . ...++++.. ...-+|+||-.. ..+||-+|.. +.+|...+ ++..+
T Consensus 99 ~~a~Fif~tEd--GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd--~~f~~ 173 (336)
T TIGR03118 99 GPSRFLFVTED--GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK--GSFRP 173 (336)
T ss_pred cceeEEEEeCC--ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec--Ccccc
Confidence 333333 4455444321 1 111333321 333477887643 6799999985 78998774 33222
Q ss_pred EEEecC--------CCCceEEEEeCCCCEEEEEEeC------------CCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 315 ILAQEI--------IMPIKDITLDRKNKRVYWCYSV------------GSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 315 ~l~~~~--------~~~P~glalD~~~~~LYw~d~~------------~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.-+... -.-|.+|.- .+++||++=.. +.+.|...+.+|.-.+++.++..++.|.+.
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCcee
Confidence 211111 134677765 57999998331 346899999999888888877889998764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.41 Score=45.20 Aligned_cols=268 Identities=10% Similarity=0.076 Sum_probs=132.1
Q ss_pred eEeeccccCCCC-----cCCccccccCCCCeEEEEeCC---------CCcEEEEEcCCc-EEE-E-EeCC----CCCce-
Q psy5792 4 LHVLPYTRNPSF-----GAVASTLKPQSGPFVYGVKTL---------SHSLHYVNIEVK-VAK-V-VSMP----DAAQV- 61 (377)
Q Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~d~~~~~ly~~d~~---------~~~I~~~~~dG~-~~~-i-~~~~----~~~~p- 61 (377)
+||.|-.....+ ++-..++++++++.+|.+++. ++.|...|...- .+. | +... .+..+
T Consensus 19 v~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~ 98 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN 98 (342)
T ss_dssp EEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG
T ss_pred EEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc
Confidence 455554444433 244457788889999998774 456667777777 222 2 2110 11222
Q ss_pred -EEEEEECCeEEEEcCCC-CceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 62 -VAAVFYKGRIIYSDAND-GNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 62 -~~lav~~~~ly~td~~~-~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
++|...+.++|+.+..- .+|.++| ..++....+.. | +|.++-=..+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---P------------------------GC~~iyP~~~~--- 148 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---P------------------------GCWLIYPSGNR--- 148 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---T------------------------SEEEEEEEETT---
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC---C------------------------CEEEEEecCCC---
Confidence 33334777888888655 5677777 33433333321 2 44443211111
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEE-ecCCCCceE--EEEEECCCCEEEEEEcCCCcEEEEEcC
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLG-PLSKVSLAA--KVDFHAAEDYIYWVDIDHGTISRTHRD 215 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~-~~~~~~~~~--~l~~d~~~~~ly~sd~~~~~I~~~~~~ 215 (377)
.|...... |++..+.++..+... +... .+.....|. .-++...++++||... .|.|+.+++.
T Consensus 149 -----------~F~~lC~D--Gsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dls 213 (342)
T PF06433_consen 149 -----------GFSMLCGD--GSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLS 213 (342)
T ss_dssp -----------EEEEEETT--SCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEET
T ss_pred -----------ceEEEecC--CceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEec-CCEEEEEecc
Confidence 12222222 237777776444321 1111 112222221 2234455788999874 6899999998
Q ss_pred CCCcEEEEeccccC-C-CCCCCCcce---EEEeccCCeEEEEcCC----C-----CEEEEEEcCCCeEEEEee-------
Q psy5792 216 GTGRENIIEYVETG-D-PTPVDQFTD---IAVDWIAQNIYWSDPK----E-----NVIEVARLTGQYRYVLIS------- 274 (377)
Q Consensus 216 G~~~~~i~~~~~~~-~-~~~~~~p~~---iavD~~~~~lYwtd~~----~-----~~I~~~~~~g~~~~~l~~------- 274 (377)
|...+..-.-+... . ...--+|-| +|++...++||+.... + ..|+++++..+.|..-+.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~S 293 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDS 293 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccce
Confidence 87644332200000 0 001112443 8999889999997432 1 268888888765432211
Q ss_pred ---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 275 ---GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 275 ---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
+....|.=++++..++.|++-|..+...+.++.-=|...+.+
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI 338 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence 124566666666656677777754333333343334444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.47 Score=43.66 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=148.3
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLS 134 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~ 134 (377)
....+.+|.+ ..+..-.+...+..|+..+ .+|+..+++.+.-- ||+..|....
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-------------------------G~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-------------------------GVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-------------------------cccEEEEecC
Confidence 3556788888 5555666666677888899 88988777764211 2333332221
Q ss_pred CccccCCcCCCcCCCcEEEEEeC-CCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 135 KVSLAAKVDFHAGISDFILFSVN-SGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 135 ~~~~~~G~~~C~~~~~~l~~s~~-~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
.. .++.+.. ....||-+++..... +-.+.+ -..+..++..+.+ ..|.+....+.|+-.
T Consensus 68 ~~--------------~~i~sStk~d~tIryLsl~dNky-----lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLW 127 (311)
T KOG1446|consen 68 SN--------------TVIHSSTKEDDTIRYLSLHDNKY-----LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLW 127 (311)
T ss_pred Cc--------------eEEEccCCCCCceEEEEeecCce-----EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEee
Confidence 11 2333332 122377777765533 112222 2347788888866 778888788899988
Q ss_pred EcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC----CCeEEEEee-CCCCCceeEEEcC
Q psy5792 213 HRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT----GQYRYVLIS-GGVDQPSALAVDP 287 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~----g~~~~~l~~-~~~~~P~~iavdp 287 (377)
++.-..-+.+.. +..+.-.|+|+ .|.+|.+-.+...|...++. |.+..-.+. ....+=..|...|
T Consensus 128 DlR~~~cqg~l~---------~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 128 DLRVKKCQGLLN---------LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP 197 (311)
T ss_pred EecCCCCceEEe---------cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC
Confidence 888555555543 44566789996 57666666666688888874 334433333 3355567889998
Q ss_pred CCCeEEEEecCCCCeEEEEe-cCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 288 ESGYLFWSESGKIPLIARAG-LDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~-ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
.+.+|-.+.. .+.|+..+ .+|+-...+-.. ...-|-+-+.-++++.+.- -. ..++|..-+++.+.....
T Consensus 198 dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~-gs-~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 198 DGKSILLSTN--ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLS-GS-DDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCEEEEEeC--CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEE-ec-CCCcEEEEEcCCCcEeeE
Confidence 8888888874 46676664 678755544332 1223434444454444444 44 567888888875544333
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=1 Score=46.34 Aligned_cols=145 Identities=15% Similarity=0.055 Sum_probs=94.4
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~ 227 (377)
+..++.+..+.|+|+.-+...+-. .+.--+..+...++.|... ++..++..-.|+|+..++. ..+.+++..
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTft~--- 432 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTFTS--- 432 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeeecC---
Confidence 344666666666777776655422 1111233456788888874 4555555567888888875 334455554
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
..-.+-..+|+|+.+..+.-.....-.|.+-++......-++++ -..| .+|+++|.+..|+=..|...-+|+-+
T Consensus 433 ----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 433 ----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 33345678999986666655566666899999876665555554 3445 78999999999998888645555554
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.14 Score=49.60 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred eEEEEEECC------CCEEEEEEcCCCcEEEEEcCCC---CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC-C
Q psy5792 187 AAKVDFHAA------EDYIYWVDIDHGTISRTHRDGT---GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK-E 256 (377)
Q Consensus 187 ~~~l~~d~~------~~~ly~sd~~~~~I~~~~~~G~---~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~-~ 256 (377)
|.|++|-.. .+.+|+.-..+-.+.+.+++|. ..+.++.. ..-++|.++++++ .+.||+++.. +
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~------d~~gR~~dV~v~~-DGallv~~D~~~ 388 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG------DLGGRPRDVAVAP-DGALLVLTDQGD 388 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec------CCCCcccceEECC-CCeEEEeecCCC
Confidence 455665532 2788888877777888999886 22333330 1226899999996 6788888766 6
Q ss_pred CEEEEEEcCC
Q psy5792 257 NVIEVARLTG 266 (377)
Q Consensus 257 ~~I~~~~~~g 266 (377)
++|.|.+..+
T Consensus 389 g~i~Rv~~~~ 398 (399)
T COG2133 389 GRILRVSYAG 398 (399)
T ss_pred CeEEEecCCC
Confidence 7999988765
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.85 Score=42.54 Aligned_cols=201 Identities=10% Similarity=0.011 Sum_probs=120.5
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEc----------CCCCcE
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR----------DGTGRE 220 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~----------~G~~~~ 220 (377)
.|.++....|++..+..++.+. .-+....+.++.|++.. .+.||.+.. ..|+++.. .+....
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~----l~~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~ 90 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGE----LDVFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDR 90 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCc----EEEEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCe
Confidence 3666766666687777664432 11223456789999887 789999864 47776621 111111
Q ss_pred EEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--------EEeeCCCCCceeEEEcCCCCeE
Q psy5792 221 NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--------VLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 221 ~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--------~l~~~~~~~P~~iavdp~~g~l 292 (377)
..+. .....++--....||++ ++.+++.+.....+...+.+-++.. .+...+--+-+|+|++. ..--
T Consensus 91 ~yvP--r~~~~TGdidiHdia~~--~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~ 165 (335)
T TIGR03032 91 LYVP--RASYVTGDIDAHDLALG--AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPR 165 (335)
T ss_pred EEee--eeeeeccCcchhheeec--CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEE
Confidence 1110 00000233347788884 7889999998888888888776532 22233344668999973 5566
Q ss_pred EEEecCC--CCeEEEEec-CCC------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEec
Q psy5792 293 FWSESGK--IPLIARAGL-DGK------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS 363 (377)
Q Consensus 293 ywtd~g~--~~~I~r~~l-dG~------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~ 363 (377)
|+|-.+. .+.=+|-+. +|. ..+++++ ++..|.+--. .+++||++|. ..+.+.+++.+.|....+..-
T Consensus 166 yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~-GLsmPhSPRW--hdgrLwvlds-gtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 166 YVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS-GLSMPHSPRW--YQGKLWLLNS-GRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred EEEEeeccCCcccccccccCCeEEEEeCCCCEEEc-CccCCcCCcE--eCCeEEEEEC-CCCEEEEEcCCCCcEEEEEEC
Confidence 6675442 234444432 222 1223333 3667766666 5799999999 999999999985555555543
Q ss_pred CCCCC
Q psy5792 364 SNIKN 368 (377)
Q Consensus 364 ~~~~~ 368 (377)
...+.
T Consensus 242 pG~~r 246 (335)
T TIGR03032 242 PGFTR 246 (335)
T ss_pred CCCCc
Confidence 33433
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.19 Score=51.18 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=91.7
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe--ccCCeEE-----------------EEcCCC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD--WIAQNIY-----------------WSDPKE 256 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD--~~~~~lY-----------------wtd~~~ 256 (377)
+++||+-|..+.+|-|++++--....|+.. .+.....|+++. +.++++| .++...
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~i------Pn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~ 214 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITEL------PNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYR 214 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeC------CCccCccccCccccCCccEEEeCcccccccCCCCCEeeccccee
Confidence 889999999999999999985444444431 344456666665 3344443 232233
Q ss_pred CEEEEEEcCCCeE--EEEeeCCCCCceeEEEcCCCCeEEEEecCC--CC-----------eEEEEe--------------
Q psy5792 257 NVIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESGK--IP-----------LIARAG-------------- 307 (377)
Q Consensus 257 ~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~lywtd~g~--~~-----------~I~r~~-------------- 307 (377)
+.+.+++.+.... ++++ ..+|+.++++|..+++|++...+ .. .+..++
T Consensus 215 ~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred EEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 4555665553221 1222 23799999999999999995211 00 111111
Q ss_pred ---------cCCCC-------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 308 ---------LDGKK-------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 308 ---------ldG~~-------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
+|+.. ....+.. -..|.|+++.+.++++|.+.. ..+.+..+++.-
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank-lS~tVSVIDv~k 352 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK-LSPTVTVIDVRK 352 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC-CCCcEEEEEChh
Confidence 11211 1111222 357999999999999999999 999999999873
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.78 Score=41.86 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=112.2
Q ss_pred ccccccCCCCeEEEEeCC--CCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEE
Q psy5792 19 ASTLKPQSGPFVYGVKTL--SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVL 94 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~ 94 (377)
-|+.++. ++.||-.-.. ...|+++++++. ...-...+.----.||++.+|+||.--|..+.....| .+-+....+
T Consensus 48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 3666632 3577776654 458999999876 3322222333456889999999999999999999999 455555555
Q ss_pred ecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCcee
Q psy5792 95 RNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKV 174 (377)
Q Consensus 95 ~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~ 174 (377)
....+-=|++- . ...|+.++++. .|+.++...-..
T Consensus 127 ~y~~EGWGLt~--d----------------------------------------g~~Li~SDGS~-~L~~~dP~~f~~-- 161 (264)
T PF05096_consen 127 PYPGEGWGLTS--D----------------------------------------GKRLIMSDGSS-RLYFLDPETFKE-- 161 (264)
T ss_dssp E-SSS--EEEE--C----------------------------------------SSCEEEE-SSS-EEEEE-TTT-SE--
T ss_pred ecCCcceEEEc--C----------------------------------------CCEEEEECCcc-ceEEECCcccce--
Confidence 43322333331 1 12477777654 466555432211
Q ss_pred eEEEEecCCCCc----eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC-----C---CCCCCcceEEE
Q psy5792 175 TQVLGPLSKVSL----AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD-----P---TPVDQFTDIAV 242 (377)
Q Consensus 175 ~~~~~~~~~~~~----~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~-----~---~~~~~p~~iav 242 (377)
.. .+.+...+. .--+.+- ++.||---..+..|.++++........+....... . ....-.+|||.
T Consensus 162 ~~-~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 162 VR-TIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EE-EEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EE-EEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 11 111121122 2223333 78887666678899999998655555443211100 0 11233789999
Q ss_pred eccCCeEEEEcCCCCEEEEEEc
Q psy5792 243 DWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 243 D~~~~~lYwtd~~~~~I~~~~~ 264 (377)
|+.++++|+|-+.=.+++...+
T Consensus 239 d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 239 DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp ETTTTEEEEEETT-SEEEEEEE
T ss_pred eCCCCEEEEEeCCCCceEEEEE
Confidence 9999999999887677776654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.93 Score=43.07 Aligned_cols=116 Identities=19% Similarity=0.083 Sum_probs=75.2
Q ss_pred CcceEEEeccCCeEEEEcCCC------CEEEEEEcCCCeEEEE-eeCC-------------CCCceeEEEcCCCCeEEEE
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKE------NVIEVARLTGQYRYVL-ISGG-------------VDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~------~~I~~~~~~g~~~~~l-~~~~-------------~~~P~~iavdp~~g~lywt 295 (377)
.+++|++ ..++.+||++... .+|.+++++|...+.+ +-.. =....+||+.|.+..||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5889999 4689999999999 9999999999875443 2111 1236899999977768877
Q ss_pred ecCC-------C-------CeEEEEecC--CC-CeEEEEecC-------CCCceEEEEeCCCCEEEEEEeCC-------C
Q psy5792 296 ESGK-------I-------PLIARAGLD--GK-KQTILAQEI-------IMPIKDITLDRKNKRVYWCYSVG-------S 344 (377)
Q Consensus 296 d~g~-------~-------~~I~r~~ld--G~-~~~~l~~~~-------~~~P~glalD~~~~~LYw~d~~~-------~ 344 (377)
-... . .+|.+.+.. |. ..+..+.-+ -..+..++.. .+++|++.+. . .
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER-~~~~~~~~~ 242 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLER-DFSPGTGNY 242 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEc-cCCCCccce
Confidence 5321 1 355666554 21 122222211 2345555553 4677999888 5 4
Q ss_pred CeEEEEEccC
Q psy5792 345 NVLESMDYSG 354 (377)
Q Consensus 345 ~~i~~~~~~G 354 (377)
.+|+.+++.+
T Consensus 243 ~ri~~v~l~~ 252 (326)
T PF13449_consen 243 KRIYRVDLSD 252 (326)
T ss_pred EEEEEEEccc
Confidence 5777787764
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.1 Score=41.76 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=81.2
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc----EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EE
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR----ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VI 259 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~----~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I 259 (377)
++.+++ .++.+++.+..-.-+..++..-+.. ..+++.. .+++-=+-+|||++ .++--|+|--+.. .=
T Consensus 105 iHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~l---a~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~g 178 (335)
T TIGR03032 105 AHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKL---APEDRCHLNGMALD-DGEPRYVTALSQSDVADG 178 (335)
T ss_pred hhheee--cCCcEEEEECcceeEEEECCCCccccccCCcccccc---CccCceeecceeee-CCeEEEEEEeeccCCccc
Confidence 445555 3677888876666666666655431 1223210 01333357899998 3455666632210 00
Q ss_pred ---------EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 260 ---------EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 260 ---------~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
.+++.... +++++ ++..|++--. .+|+||+.|++ .+.+.+++.+....+.+..- -+.|.||+..
T Consensus 179 WR~~~~~gG~vidv~s~--evl~~-GLsmPhSPRW--hdgrLwvldsg-tGev~~vD~~~G~~e~Va~v-pG~~rGL~f~ 251 (335)
T TIGR03032 179 WREGRRDGGCVIDIPSG--EVVAS-GLSMPHSPRW--YQGKLWLLNSG-RGELGYVDPQAGKFQPVAFL-PGFTRGLAFA 251 (335)
T ss_pred ccccccCCeEEEEeCCC--CEEEc-CccCCcCCcE--eCCeEEEEECC-CCEEEEEcCCCCcEEEEEEC-CCCCccccee
Confidence 11222222 23444 6888888877 48999999997 69999999983333444443 4789999985
Q ss_pred CCCCEEEEE
Q psy5792 331 RKNKRVYWC 339 (377)
Q Consensus 331 ~~~~~LYw~ 339 (377)
+..+++.
T Consensus 252 --G~llvVg 258 (335)
T TIGR03032 252 --GDFAFVG 258 (335)
T ss_pred --CCEEEEE
Confidence 5555554
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.9 Score=42.54 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=64.0
Q ss_pred EECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE--EEEEEcCCC
Q psy5792 192 FHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV--IEVARLTGQ 267 (377)
Q Consensus 192 ~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~--I~~~~~~g~ 267 (377)
+.+.+.+|+++....| .|++++++|+..+.+.. .......-.+.+.+..|-+.....+. |...++...
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 4555788887755444 89999999987655554 22211112233334555444433333 666665433
Q ss_pred e-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 268 Y-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 268 ~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
. .+.+......++...+.+. +..+|....+..+.+.-...+|.....+
T Consensus 361 ~~~~~lt~~~~~e~ps~~~ng-~~i~~~s~~~~~~~l~~~s~~g~~~~~~ 409 (425)
T COG0823 361 GKIRILTSTYLNESPSWAPNG-RMIMFSSGQGGGSVLSLVSLDGRVSRPL 409 (425)
T ss_pred CcEEEccccccCCCCCcCCCC-ceEEEeccCCCCceEEEeeccceeEEEE
Confidence 3 4455444455566666652 4455555554456677777777666533
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=2 Score=41.99 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=67.8
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla 328 (377)
+-........+.+.+.+|...+.+.. ++....++++++...++-+++ +...|+.++++..+.+.+-...-.-..+++
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~ 450 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD 450 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence 33444444589999999988766655 588899999999767788886 357999999998888777665545556666
Q ss_pred EeCCCCEEEEEEe--CCCCeEEEEEccC
Q psy5792 329 LDRKNKRVYWCYS--VGSNVLESMDYSG 354 (377)
Q Consensus 329 lD~~~~~LYw~d~--~~~~~i~~~~~~G 354 (377)
+.+..+.+-++=. .....|.-.+.+|
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCC
Confidence 6544444333211 0223444555554
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.2 Score=42.86 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=129.9
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+..+++...+++|-+.-+..++|.+-+.... +..- .++......|++ .++++..|-..++.|...| ..|-=..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ--QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec--cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 44555666666777665556667777666655 2111 144555667777 6778888888888888888 6654444
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
++..... ..++.+-..+ ..+++..-.|.+|..++.-..
T Consensus 387 TFteHts~Vt~v~f~~~g-----------------------------------------~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARG-----------------------------------------NVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred EeccCCCceEEEEEEecC-----------------------------------------CEEEEeecCCeEEeeeecccc
Confidence 4544333 5555542221 133444334468887775443
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
. . ..+..+..-....+++|+.+.-++-.+...-.|+..++.......+.. ..-+-+.+|+++|.+..| .
T Consensus 426 N--f-RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-------GHEgPVs~l~f~~~~~~L-a 494 (893)
T KOG0291|consen 426 N--F-RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-------GHEGPVSGLSFSPDGSLL-A 494 (893)
T ss_pred e--e-eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-------CCCCcceeeEEccccCeE-E
Confidence 3 1 122223334567889999888888877777789988886444333333 122336789999976655 5
Q ss_pred EcCCCCEEEEEEcCCC--eEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 252 SDPKENVIEVARLTGQ--YRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 252 td~~~~~I~~~~~~g~--~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+-+..++|.+-++=++ ..+++-- -....++++.|.+..|-++.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred eccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEE
Confidence 6565666666555443 2223211 12234555555555555543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.7 Score=41.79 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=66.8
Q ss_pred EcCCCC--EEEEEEcCCCeEEEEeeC----CCCCceeEEE--cCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 252 SDPKEN--VIEVARLTGQYRYVLISG----GVDQPSALAV--DPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP 323 (377)
Q Consensus 252 td~~~~--~I~~~~~~g~~~~~l~~~----~~~~P~~iav--dp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~ 323 (377)
.+...+ .+..++......+++... -+.....+.. ...+++|++++...-.+|+..+.+|...+.|......-
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V 282 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEV 282 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-E
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceee
Confidence 344444 567777765444444432 1333344443 23345555555322578999999998877666553222
Q ss_pred ceEEEEeCCCCEEEEEEeCC----CCeEEEEEcc-CCceEEE
Q psy5792 324 IKDITLDRKNKRVYWCYSVG----SNVLESMDYS-GGSKMQL 360 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~~~----~~~i~~~~~~-G~~~~~~ 360 (377)
-.-+.+|..++.||++-. . ...|++++++ |+..+.|
T Consensus 283 ~~i~~~d~~~~~iyf~a~-~~~p~~r~lY~v~~~~~~~~~~L 323 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTAN-GDNPGERHLYRVSLDSGGEPKCL 323 (353)
T ss_dssp EEEEEEECTSSEEEEEES-SGGTTSBEEEEEETTETTEEEES
T ss_pred cccceEcCCCCEEEEEec-CCCCCceEEEEEEeCCCCCeEec
Confidence 124888999999999987 4 5699999999 7655444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.1 Score=40.49 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=132.7
Q ss_pred CCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEcCCCCceEEEecCCC-
Q psy5792 27 GPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAG- 99 (377)
Q Consensus 27 ~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~- 99 (377)
..|+|+.|.. .++++.+|.|.. .-++- .+...+..++-.+..+|.++....++.+-..+ ..+++.....-
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt-Dvv~~~D~~TL~ 78 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERT-DVVEIWDTQTLS 78 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEE-EEEEEEETTTTE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccce-eEEEEEecCcCc
Confidence 4588888883 467888887666 44443 33333444444677888876533333222100 01222222211
Q ss_pred cee-EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-CCeEEEEEcCCCCceeeEE
Q psy5792 100 ISD-FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS-GYDIMGIKYNKNESKVTQV 177 (377)
Q Consensus 100 p~~-i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~-~~~I~~~~l~~~~~~~~~~ 177 (377)
|.+ |.+-...|+ +|++.+.... =...+.++++.+-+ .-+|..+++..... -.
T Consensus 79 ~~~EI~iP~k~R~-----------------~~~~~~~~~~------ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---v~ 132 (342)
T PF06433_consen 79 PTGEIEIPPKPRA-----------------QVVPYKNMFA------LSADGKFLYVQNFTPATSVTVVDLAAKKV---VG 132 (342)
T ss_dssp EEEEEEETTS-B-------------------BS--GGGEE------E-TTSSEEEEEEESSSEEEEEEETTTTEE---EE
T ss_pred ccceEecCCcchh-----------------eecccccceE------EccCCcEEEEEccCCCCeEEEEECCCCce---ee
Confidence 322 222111122 1221111111 00123566665521 11377777766532 11
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc--ceEEEeccCCeEEEEcCC
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF--TDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p--~~iavD~~~~~lYwtd~~ 255 (377)
..+..+ -.+.|-..++. |.+-..+|++..+.+|-...+.... ....... ..| ..=+++-.++.+||...
T Consensus 133 ei~~PG----C~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~~F~~~--~dp~f~~~~~~~~~~~~~F~Sy- 203 (342)
T PF06433_consen 133 EIDTPG----CWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKS-TKVFDPD--DDPLFEHPAYSRDGGRLYFVSY- 203 (342)
T ss_dssp EEEGTS----EEEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEE-EEESSTT--TS-B-S--EEETTTTEEEEEBT-
T ss_pred eecCCC----EEEEEecCCCc-eEEEecCCceEEEEECCCCCEeEee-ccccCCC--CcccccccceECCCCeEEEEec-
Confidence 222222 11222222344 4455578899888887433322111 1111111 111 11133434667888655
Q ss_pred CCEEEEEEcCCCeEEEEeeC---------CCCCc---eeEEEcCCCCeEEEEec-C-----C--CCeEEEEecCCCCeEE
Q psy5792 256 ENVIEVARLTGQYRYVLISG---------GVDQP---SALAVDPESGYLFWSES-G-----K--IPLIARAGLDGKKQTI 315 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~---------~~~~P---~~iavdp~~g~lywtd~-g-----~--~~~I~r~~ldG~~~~~ 315 (377)
.+.|+.+++.|...+..-.- .--.| .-+|+++..++||+.-. + + ...|+..++.-..+..
T Consensus 204 ~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 204 EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA 283 (342)
T ss_dssp TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE
T ss_pred CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE
Confidence 47899999999764432210 11234 34899999999999742 1 1 2357777766443322
Q ss_pred EEecCCCCc-eEEEEeCCCC-EEEEEEeCCCCeEEEEEcc
Q psy5792 316 LAQEIIMPI-KDITLDRKNK-RVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 316 l~~~~~~~P-~glalD~~~~-~LYw~d~~~~~~i~~~~~~ 353 (377)
-+. +..| .+|++....+ +||-++. ....+...+..
T Consensus 284 Ri~--l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~ 320 (342)
T PF06433_consen 284 RIP--LEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAA 320 (342)
T ss_dssp EEE--EEEEESEEEEESSSS-EEEEEET-TTTEEEEEETT
T ss_pred EEe--CCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCc
Confidence 222 2222 3566654444 5555565 55666666654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.11 Score=38.89 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 311 ~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+..++++. .+..|+||++|+..+.||+++. ..+.|......
T Consensus 44 ~~~~~va~-g~~~aNGI~~s~~~k~lyVa~~-~~~~I~vy~~~ 84 (86)
T PF01731_consen 44 KEVKVVAS-GFSFANGIAISPDKKYLYVASS-LAHSIHVYKRH 84 (86)
T ss_pred CEeEEeec-cCCCCceEEEcCCCCEEEEEec-cCCeEEEEEec
Confidence 33344444 4899999999999999999999 88888876553
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.7 Score=38.82 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=132.1
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
.+.-...++| -.++-|.|...++.|...| .+|+-...+..... ..+++|...-
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH------------------------ 205 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH------------------------ 205 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC------------------------
Confidence 3445566788 5678888888888888889 88887766664445 7777773331
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
+ .+|+.+..+.|...+|+.... +-. -..++...++++++. -.+.++-..+..++..
T Consensus 206 ----------------p-YlFs~gedk~VKCwDLe~nkv-----IR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 206 ----------------P-YLFSAGEDKQVKCWDLEYNKV-----IRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVW 262 (460)
T ss_pred ----------------c-eEEEecCCCeeEEEechhhhh-----HHHhccccceeEEEecccc-ceeEEecCCcceEEEe
Confidence 2 334444444577777765421 100 123456788888874 4445555455566666
Q ss_pred EcCCCCcEEEEeccccCCCCC-CCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcCCCC
Q psy5792 213 HRDGTGRENIIEYVETGDPTP-VDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~-~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g 290 (377)
++.... .+.+- .+ -.....+...+.+..+| |-+...+|..-++. |+...++.. .-...++++++| .-
T Consensus 263 DiRtr~-~V~~l-------~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP-~e 331 (460)
T KOG0285|consen 263 DIRTRA-SVHVL-------SGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHP-KE 331 (460)
T ss_pred eecccc-eEEEe-------cCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCceeEeeec-ccceeeEEecCC-ch
Confidence 765322 22222 12 22244555555556564 44455667766664 344444444 356789999998 56
Q ss_pred eEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 291 YLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
++|-+-. ...|....+. |...+. ++..-...+.|++ ..+.+|++-. .++.|..-+...+.
T Consensus 332 ~~fASas--~dnik~w~~p~g~f~~n-lsgh~~iintl~~--nsD~v~~~G~-dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 332 NLFASAS--PDNIKQWKLPEGEFLQN-LSGHNAIINTLSV--NSDGVLVSGG-DNGSIMFWDWKSGH 392 (460)
T ss_pred hhhhccC--CccceeccCCccchhhc-cccccceeeeeee--ccCceEEEcC-CceEEEEEecCcCc
Confidence 6666542 3455555442 433333 1111122334444 3455666666 66666666665443
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.8 Score=40.91 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=146.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTV 93 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~ 93 (377)
.+..+|-++.......+-+..|.|..-|+.-+ .+++. ....-..||.+ .+..+++.|-.+=..+.+ +|....+
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~--AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~--~~~p~~t 143 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK--AHEGLVRGICVTQTSFFTVGDDKTVKQWKI--DGPPLHT 143 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee--cccCceeeEEecccceEEecCCcceeeeec--cCCccee
Confidence 56677777766566667777888988898887 56564 44556788988 677778877654444444 3434444
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccc------cCCCccccCCcC---CCc--CCCcEEEEEeCCCCeE
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLG------PLSKVSLAAKVD---FHA--GISDFILFSVNSGYDI 162 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~------~~~~~~~~~G~~---~C~--~~~~~l~~s~~~~~~I 162 (377)
+..+....||.-..... ....|.+.|- ..|-....-|+. +|+ ..+.+++.+.+..++|
T Consensus 144 ilg~s~~~gIdh~~~~~-----------~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNS-----------VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeccccccccccccccc-----------cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 43322233332111100 0112221111 112222244555 333 2456777777666668
Q ss_pred EEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCCCCCCCcceEE
Q psy5792 163 MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDPTPVDQFTDIA 241 (377)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~~~~~~p~~ia 241 (377)
.-+++.-... +..+.-.-++-+|++.+ +...|.+-.+...++..++.--.+. .+.. ......-+++
T Consensus 213 vLyD~R~~~P-----l~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------dhvsAV~dVd 279 (433)
T KOG0268|consen 213 VLYDLRQASP-----LKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------DHVSAVMDVD 279 (433)
T ss_pred EEEecccCCc-----cceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhc-------ccceeEEEec
Confidence 8887754422 11111223466788888 7788877767778887776532111 1111 2233355566
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCC-eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQ-YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+.+ +|.=|++-+-..+|..+..+.. .+.+...--+++..++.-.....+|+--....+-++++++..
T Consensus 280 fsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 280 FSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 665 5666677777778888887654 344444334666677776655556655322236788888654
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=5.5 Score=36.86 Aligned_cols=266 Identities=14% Similarity=0.078 Sum_probs=132.2
Q ss_pred cCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEEC-CeEEEEcCCCCceEEEcCCC
Q psy5792 11 RNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYK-GRIIYSDANDGNIRSINLDG 88 (377)
Q Consensus 11 ~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~g 88 (377)
++|-.++++.+-+++.++.|-++. =.+.+...+.+.. .+..+ ....-....++.+ ..+|..+ -.+.|+++|.++
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvss-WDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~~~~~~G~-~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSS-WDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADESTIVTGG-LDGQVRRYDLNT 84 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEe-ccCcEEEEeccchhhhhhe--ecCCceeeeeccCCceEEEec-cCceEEEEEecC
Confidence 455567788888887777765443 5677777777776 44333 2222234455533 3565554 467899999655
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
.....+.+... ..+|.-. +.. -.+++.+-...|...+.
T Consensus 85 ~~~~~igth~~~i~ci~~~-~~~----------------------------------------~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYS-YEV----------------------------------------GCVISGSWDKTIKFWDP 123 (323)
T ss_pred CcceeeccCCCceEEEEee-ccC----------------------------------------CeEEEcccCccEEEEec
Confidence 55445544333 3333321 111 13334333334665554
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEeccccCCCCCCC-CcceEEEecc
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVETGDPTPVD-QFTDIAVDWI 245 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~~~~~~~~-~p~~iavD~~ 245 (377)
...- ........+.+..+++. ++.|.+.-. ..++...++.-- ....... ..++ ..++|+.-+
T Consensus 124 R~~~-----~~~~~d~~kkVy~~~v~--g~~LvVg~~-~r~v~iyDLRn~~~~~q~re-------S~lkyqtR~v~~~p- 187 (323)
T KOG1036|consen 124 RNKV-----VVGTFDQGKKVYCMDVS--GNRLVVGTS-DRKVLIYDLRNLDEPFQRRE-------SSLKYQTRCVALVP- 187 (323)
T ss_pred cccc-----cccccccCceEEEEecc--CCEEEEeec-CceEEEEEcccccchhhhcc-------ccceeEEEEEEEec-
Confidence 4211 11111222233333332 444444221 123333333210 0000001 1222 256677776
Q ss_pred CCeEEEEcCCCCEEEEEEcCCC----eEEEEee--------CCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQ----YRYVLIS--------GGVDQP-SALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~----~~~~l~~--------~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
++-=|+...-.+||.+=.+|-+ .++-... ..+..| ++|+++|..+.++-.. ..+.|..-++ .+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--sDG~V~~Wd~--~~ 263 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--SDGIVNIWDL--FN 263 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC--CCceEEEccC--cc
Confidence 6667777777777777666554 2221111 123345 8999999866655443 3455555443 34
Q ss_pred eEEEEe--cCCCCceEEEEeCCCCEEEEEEe
Q psy5792 313 QTILAQ--EIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 313 ~~~l~~--~~~~~P~glalD~~~~~LYw~d~ 341 (377)
++.|-+ ..-.....|+++.....|-++..
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 443322 21134556788777777777766
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.4 Score=35.65 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=46.8
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee------------CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS------------GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~------------~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+.|+.|.||--=....+|.+++++.......++ .+.+-++|||-||..+++|.|-.. =+.++.+.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~-wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL-WPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc-CceeEEEEec
Confidence 455677777655566778888887654433222 235578999999999999999532 4677777665
Q ss_pred C
Q psy5792 310 G 310 (377)
Q Consensus 310 G 310 (377)
+
T Consensus 260 ~ 260 (262)
T COG3823 260 E 260 (262)
T ss_pred C
Confidence 4
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.9 Score=39.71 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCC-CCCceeEE
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGG-VDQPSALA 284 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~-~~~P~~ia 284 (377)
+|+..+++....+.+.. --+.-..-++-+.+..|.++-.. ...|++++++++....|.... .. ..=.
T Consensus 219 ~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~--~~Ps 288 (425)
T COG0823 219 RIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGIN--TSPS 288 (425)
T ss_pred eEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccc--cCcc
Confidence 57777887666666654 11122223444446777666443 347999999998866654421 11 1334
Q ss_pred EcCCCCeEEEE-ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCe--EEEEEcc
Q psy5792 285 VDPESGYLFWS-ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV--LESMDYS 353 (377)
Q Consensus 285 vdp~~g~lywt-d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~--i~~~~~~ 353 (377)
+.|...+|+++ |.+..+.|++++++|+..+.+.... ....--.+.+.+.+|-+... ..+. |...++.
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-~~~~~p~~SpdG~~i~~~~~-~~g~~~i~~~~~~ 358 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-GGNSNPVWSPDGDKIVFESS-SGGQWDIDKNDLA 358 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC-CCCcCccCCCCCCEEEEEec-cCCceeeEEeccC
Confidence 55666777766 4444789999999999887666552 33223334445555555553 3333 4444443
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.2 Score=45.28 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=48.6
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCC-------------------CEEEEEEcCCC-------eEEE-Eee----------
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKE-------------------NVIEVARLTGQ-------YRYV-LIS---------- 274 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~-------------------~~I~~~~~~g~-------~~~~-l~~---------- 274 (377)
..+.+|++|++++.++.+|++-.+. +.|++..+++. .-.. +..
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4577899999999999999985432 48999988765 2222 221
Q ss_pred ------CCCCCceeEEEcCCCCeEEEEecC
Q psy5792 275 ------GGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 275 ------~~~~~P~~iavdp~~g~lywtd~g 298 (377)
..+..|-.|++|| .|.|++.+-+
T Consensus 427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDP-DGNLWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECC-CCCEEEEeCC
Confidence 1277999999998 6778887644
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=93.50 E-value=7.5 Score=37.41 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEee
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLIS 274 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~ 274 (377)
++.+|.++. .+.++.+++... +.+.. .........+++ +++||+++. .+.+..++.+ |+..-..-.
T Consensus 241 ~~~vy~~~~-~g~l~a~d~~tG--~~~W~-------~~~~~~~~p~~~--~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDLRSG--RVLWK-------RDASSYQGPAVD--DNRLYVTDA-DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEc-CCEEEEEECCCC--cEEEe-------eccCCccCceEe--CCEEEEECC-CCeEEEEECCCCcEEEcccc
Confidence 678998874 578888887522 22232 122234455666 788998864 5789988885 432211100
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 275 GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 275 ~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
.........++ .+++||..+. ...|...+.+ |+....+-...-......++ .+++||+... .++|+.+
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~--~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~--~~~~l~v~~~--dG~l~~~ 376 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDF--EGYLHWLSREDGSFVARLKTDGSGIASPPVV--VGDGLLVQTR--DGDLYAF 376 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeC--CCEEEEEECCCCCEEEEEEcCCCccccCCEE--ECCEEEEEeC--CceEEEe
Confidence 00001112233 2568888763 4677777654 44333322111001111222 2467888775 4566554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.2 Score=42.40 Aligned_cols=107 Identities=16% Similarity=0.247 Sum_probs=68.2
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCC------EEEEEEcCCC-----eEE-----EEeeCC---C----CCceeEEEcCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKEN------VIEVARLTGQ-----YRY-----VLISGG---V----DQPSALAVDPE 288 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~------~I~~~~~~g~-----~~~-----~l~~~~---~----~~P~~iavdp~ 288 (377)
..++.-.||++|. .+..||+-+.++ +++..+++.. ... .+.... + ..|.+|++ +.
T Consensus 17 ~~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~ 94 (326)
T PF13449_consen 17 IPFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PP 94 (326)
T ss_pred CccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ec
Confidence 3466788999986 344556533333 3776666541 111 111111 1 26789999 57
Q ss_pred CCeEEEEecCCC------CeEEEEecCCCCeEEE-EecCC-------------CCceEEEEeCCCCEEEEEEe
Q psy5792 289 SGYLFWSESGKI------PLIARAGLDGKKQTIL-AQEII-------------MPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 289 ~g~lywtd~g~~------~~I~r~~ldG~~~~~l-~~~~~-------------~~P~glalD~~~~~LYw~d~ 341 (377)
+|.+||++.+ . ++|.+++.+|.....+ +...+ .-.-|||+.+.+.+||.+-.
T Consensus 95 ~g~~~is~E~-~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 95 DGSFWISSEG-GRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCCEEEEeCC-ccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 9999999986 6 9999999998875544 22211 22568999887777887744
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.56 Score=29.33 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=30.8
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 286 (377)
.++.||+++...++|.++++.......-+.. ...|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 3678999999999999999865543333444 4779999874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.25 Score=37.03 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
.++..|.||++|+.++.||+++...+.|.+....
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4788999999999999999999999999987653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.54 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF 66 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav 66 (377)
++++||+++...+.|..+|+... ...+ .....|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i---~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI---PVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE---ECCCCCceEEe
Confidence 56789999999999999998666 4444 44678998875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.51 E-value=2 Score=43.60 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCC-------------------CcEEEEEcCCC-------CcEEEEeccc--------
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDH-------------------GTISRTHRDGT-------GRENIIEYVE-------- 227 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~-------------------~~I~~~~~~G~-------~~~~i~~~~~-------- 227 (377)
+.+.++.++.+++.++.||++-... |.|+++..++. ..+.++....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4677899999999999999986433 38999998765 2233332111
Q ss_pred --cCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 228 --TGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 228 --~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
......+..|.+|++|+ .++||+..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~e 453 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDP-DGNLWIQE 453 (524)
T ss_pred cCcccCCCcCCCCceEECC-CCCEEEEe
Confidence 01124577899999997 57777763
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=92.50 E-value=12 Score=36.85 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=126.8
Q ss_pred eeEeeccccCCCCc---CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcC
Q psy5792 3 YLHVLPYTRNPSFG---AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDA 76 (377)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~ 76 (377)
..||..++..++.+ .++++++.++.+.=+.+ +.+-++.-++..+. ++++. .--....++.+ .+++|..+--
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aV-t~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAV-TSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEE-ecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccC
Confidence 35677777777754 66777888876654333 34555666777776 44442 34456788888 7889999887
Q ss_pred CCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 77 NDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 77 ~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
..+.|..++ .+....+.+.....|....-|+++.- .++.+
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~---------------------------------------t~l~s 128 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN---------------------------------------TMLVS 128 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCC---------------------------------------eEEEe
Confidence 888899888 32222333333334544444444321 23333
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
..+...+.-.++... .+...+.+ ..-....++.+.+++|.++-..+|.|.-.+..... ..+.. -+-
T Consensus 129 ~sDd~v~k~~d~s~a-----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-------lnh 195 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTA-----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-------LNH 195 (487)
T ss_pred cCCCceEEEEEcCCc-----EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-------ecC
Confidence 333222333344333 11222222 22367788888899999998888999888876443 23332 123
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp 287 (377)
+.|..-.+--.++.++.+-.+ +.+.+-++- |........+.......+.+..
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 333322222235566665554 567777776 4332222222344455666543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=13 Score=37.45 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=109.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc---------EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK---------VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~---------~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~ 85 (377)
.+.+++.++.++.+..+-+..+.|...++... ..++. .+......|++. .+.+.++-..++.|...|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 45677777744455556666777777776432 22232 334456677773 345666666677888888
Q ss_pred -CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 86 -LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 86 -~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
.+++....+..... +.++.. +++. .++++....+.|+
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~-spdG----------------------------------------~lLatgs~Dg~Ir 193 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEW-NLDG----------------------------------------SLLCTTSKDKKLN 193 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEE-ECCC----------------------------------------CEEEEecCCCEEE
Confidence 55655444432222 344433 2221 2444444444577
Q ss_pred EEEcCCCCceeeEEEEecCCC--CceEEEEEECCCCEEEEEEc---CCCcEEEEEcCCCC-cEEEEeccccCCCCCCCCc
Q psy5792 164 GIKYNKNESKVTQVLGPLSKV--SLAAKVDFHAAEDYIYWVDI---DHGTISRTHRDGTG-RENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~d~~~~~ly~sd~---~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~~~p 237 (377)
..++..... +..+... .....+.+....+.++-+-. ..+.|...++.... ....... ......
T Consensus 194 IwD~rsg~~-----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~------d~~~~~ 262 (493)
T PTZ00421 194 IIDPRDGTI-----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL------DQSSAL 262 (493)
T ss_pred EEECCCCcE-----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc------CCCCce
Confidence 777754322 1111111 11223334443455543321 23567767765322 1111110 111112
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCC
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPE 288 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~ 288 (377)
....+|+.++.||.+-...+.|...++...............| +++++-|.
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2345677666677766667889998887654333322222233 67777774
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=91.97 E-value=9.2 Score=34.55 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=135.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.++-|.|.++...| +-.....|+..|++.. ..-+.. +..-++..++.+ .+++-.+|...++.+..-+ ..-.-.
T Consensus 41 sqVNrLeiTpdk~~L--Aaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q 118 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDL--AAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ 118 (311)
T ss_pred cceeeEEEcCCcchh--hhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence 356778888877777 7777888999999877 322221 144567888888 7888888888888777776 321112
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
+.+... .|..-.+.||.. .-|+.++.+ |.|+.-++....
T Consensus 119 R~~~~~-spVn~vvlhpnQ---------------------------------------teLis~dqs-g~irvWDl~~~~ 157 (311)
T KOG0315|consen 119 RNYQHN-SPVNTVVLHPNQ---------------------------------------TELISGDQS-GNIRVWDLGENS 157 (311)
T ss_pred hhccCC-CCcceEEecCCc---------------------------------------ceEEeecCC-CcEEEEEccCCc
Confidence 222222 222222223321 134544433 468888886554
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-Cc---EEEEeccccCCCCCCCCcceEEEeccCC
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GR---ENIIEYVETGDPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~---~~i~~~~~~~~~~~~~~p~~iavD~~~~ 247 (377)
. +..+.|- ....+..+.+++.+.+|--.+ +.|..+..++-+. .. +.+.. ....-+....+-+-+...
T Consensus 158 c--~~~liPe-~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k-----~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 158 C--THELIPE-DDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHK-----FQAHNGHILRCLLSPDVK 228 (311)
T ss_pred c--ccccCCC-CCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhh-----eecccceEEEEEECCCCc
Confidence 3 3334442 335577888888666655444 4566666665331 11 11111 001112344455665433
Q ss_pred eEEEEcCCCCEEEEEEcCCCeE-EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYR-YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
...|-+...++.+.+.++-++ +..+..+...-.+.++.....||+-+......+++..
T Consensus 229 -~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 229 -YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred -EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 445666777888888888743 3344555567788888876667766643223455443
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=91.74 E-value=10 Score=34.69 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=138.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-------EEEEEeCCCCCc-eEEEEE-ECCeEEEEcCCCCceEEEc-
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-------VAKVVSMPDAAQ-VVAAVF-YKGRIIYSDANDGNIRSIN- 85 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-------~~~i~~~~~~~~-p~~lav-~~~~ly~td~~~~~I~~~~- 85 (377)
+.+.++++-..++.+|...+....|.+-++... .+.+ .+..| ..++++ .++..+++-..++.++.-|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~---~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL---TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee---eccceEecceEEccCCceEEeccccceEEEEEe
Confidence 356788888888889888888888888776544 2222 23333 455666 7777788877788888889
Q ss_pred CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 86 LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 86 ~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
..|+..+.+..... ..++++...++|. |..+.. ....++-.... +...
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qi-----------------vSGSrD-------------kTiklwnt~g~-ck~t 141 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQI-----------------VSGSRD-------------KTIKLWNTLGV-CKYT 141 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCcee-----------------ecCCCc-------------ceeeeeeeccc-EEEE
Confidence 66766555554444 8888886666661 111000 01111111110 1111
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEE-EEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIY-WVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly-~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
+.-++ ...-...+.|.|.+...+ ++-...+.+...++++-..+.... ..-+....++|-
T Consensus 142 ~~~~~-------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-------gh~~~v~t~~vS 201 (315)
T KOG0279|consen 142 IHEDS-------------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-------GHSGYVNTVTVS 201 (315)
T ss_pred EecCC-------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-------cccccEEEEEEC
Confidence 11111 022356677777664444 444456778888888644333322 234457788888
Q ss_pred ccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 244 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 244 ~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
+ .|.|--+-...+.++.-+++-+..-.-+ ......+++++-|. =||--.+....|.-.+++.+
T Consensus 202 p-DGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspn---rywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 202 P-DGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPN---RYWLCAATATSIKIWDLESK 264 (315)
T ss_pred C-CCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCC---ceeEeeccCCceEEEeccch
Confidence 5 5778777777789999999765442222 23556788999873 24433333345665666543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.4 Score=36.54 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=87.5
Q ss_pred ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCC
Q psy5792 67 YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFH 145 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C 145 (377)
.++.-+.+....+.|+.-| .+|+....+.-+..+.++.+-+..+
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~----------------------------------- 197 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR----------------------------------- 197 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-----------------------------------
Confidence 7888888888888899999 8898877776554466666533332
Q ss_pred cCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEE-Ee
Q psy5792 146 AGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI-IE 224 (377)
Q Consensus 146 ~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i-~~ 224 (377)
.|..+.+.+ |.-.+...-+ .+....-.-++.+-.+.+ ...+|++--+...+++++.+....... ..
T Consensus 198 -----ilTia~gss--V~Fwdaksf~-----~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 198 -----ILTIAYGSS--VKFWDAKSFG-----LLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred -----EEEEecCce--eEEecccccc-----ceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeeccc
Confidence 355555544 5444333221 111112222344455566 458888877778899999875432222 23
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+-+.++.+-| .|.+|-+-+..++|..-.
T Consensus 265 -------gh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 265 -------GHFGPVHCVRFSP-DGELYASGSEDGTIRLWQ 295 (334)
T ss_pred -------CCCCceEEEEECC-CCceeeccCCCceEEEEE
Confidence 3455577888886 688998877777655433
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=91.31 E-value=11 Score=34.09 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=83.9
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
|..+..-. ||-+++..... +.+..+.+ .++..++.|...+..+| +-.+.+.+...++..-..+....
T Consensus 55 LAaa~~qh--vRlyD~~S~np---~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~------ 122 (311)
T KOG0315|consen 55 LAAAGNQH--VRLYDLNSNNP---NPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQ------ 122 (311)
T ss_pred hhhccCCe--eEEEEccCCCC---CceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccchhcc------
Confidence 44444444 99999987655 23344444 37789999998666666 44467777777776433333333
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
...-...+.+.+....|+..|.. +.|.+-++.... ...++-......+.++|+|...+|-=+
T Consensus 123 --~~spVn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 123 --HNSPVNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred --CCCCcceEEecCCcceEEeecCC-CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 12346678888888888888775 678888887764 335555556667899999865444433
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=91.18 E-value=16 Score=35.63 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=102.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.++++.+.+.++++.|++... .+...+. +|+ ..++..+...-.-..+++ -++-||-+-..++.+...+ .++.+.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~ 382 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV 382 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc
Confidence 3568899999999998886654 4444444 666 666642222233456677 4556666666666666667 555555
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+....+ +..|.+ .+ +.+.+....+.++|+-.+|.-.
T Consensus 383 a~Fpght~~vk~i~F-sE----------------------------------------NGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 383 AKFPGHTGPVKAISF-SE----------------------------------------NGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ccCCCCCCceeEEEe-cc----------------------------------------CceEEEEEecCCeEEEEEehhh
Confidence 55544334 344443 11 1234444434445777776543
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
.. . ..+++........++||..+.+|-.. ...-+|+.+.........+..- ....+...++.+.. ..-|
T Consensus 422 ~n--~-kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~-----~~~sg~st~v~Fg~--~aq~ 490 (506)
T KOG0289|consen 422 KN--F-KTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKEL-----ADHSGLSTGVRFGE--HAQY 490 (506)
T ss_pred cc--c-ceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehh-----hhcccccceeeecc--cceE
Confidence 33 1 22334444467889999977777665 2334666666544443333320 01223355566652 3344
Q ss_pred EEcCCCCEE
Q psy5792 251 WSDPKENVI 259 (377)
Q Consensus 251 wtd~~~~~I 259 (377)
..+....+|
T Consensus 491 l~s~smd~~ 499 (506)
T KOG0289|consen 491 LASTSMDAI 499 (506)
T ss_pred Eeeccchhh
Confidence 445544444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=17 Score=35.36 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=73.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 275 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~ 275 (377)
++.||+.+. .+.++.+++... +.+-. ..+..+..++++ +++||+.+.. +++...+...... +-..
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG--~~~W~-------~~~~~~~~~~~~--~~~vy~~~~~-g~l~ald~~tG~~--~W~~ 320 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSG--QIVWK-------REYGSVNDFAVD--GGRIYLVDQN-DRVYALDTRGGVE--LWSQ 320 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCC--CEEEe-------ecCCCccCcEEE--CCEEEEEcCC-CeEEEEECCCCcE--EEcc
Confidence 688998874 578888887532 22333 233344456666 7899998754 6888888864321 1110
Q ss_pred C-C--CCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 276 G-V--DQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 276 ~-~--~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
. + ....+.++ .+++||..+. ...|...+.+ |+.....-...-......++ .+++||+... .+.|+.+.
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~--~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~--~G~l~~~~ 392 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDS--EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQAR--DGTVYAIT 392 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeC--CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeC--CceEEEEe
Confidence 0 0 11122233 3688988874 4677777653 43222211100011122233 3579999875 56777665
Q ss_pred c
Q psy5792 352 Y 352 (377)
Q Consensus 352 ~ 352 (377)
.
T Consensus 393 ~ 393 (394)
T PRK11138 393 R 393 (394)
T ss_pred C
Confidence 3
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=15 Score=34.19 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=88.8
Q ss_pred ECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEE
Q psy5792 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 271 (377)
Q Consensus 193 d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~ 271 (377)
...++++|++|..+ .+..++...-...++... -++ +-.++.++- ++..|++|...+ ....++......+
T Consensus 93 ~vse~yvyvad~ss-GL~IvDIS~P~sP~~~~~------lnt~gyaygv~vs--Gn~aYVadlddg-fLivdvsdpssP~ 162 (370)
T COG5276 93 RVSEEYVYVADWSS-GLRIVDISTPDSPTLIGF------LNTDGYAYGVYVS--GNYAYVADLDDG-FLIVDVSDPSSPQ 162 (370)
T ss_pred EecccEEEEEcCCC-ceEEEeccCCCCcceecc------ccCCceEEEEEec--CCEEEEeeccCc-EEEEECCCCCCce
Confidence 34489999999654 444455543222222210 122 224444443 788999997544 3334443333323
Q ss_pred EeeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEE
Q psy5792 272 LISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLE 348 (377)
Q Consensus 272 l~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~ 348 (377)
|... ..-.-+.++| ...+-|++.++ .-+...+.+.....+++..--..|.--.+-...+|.|.++. ...+.
T Consensus 163 lagrya~~~~d~~~v~I--SGn~AYvA~~d--~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 163 LAGRYALPGGDTHDVAI--SGNYAYVAWRD--GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred eeeeeccCCCCceeEEE--ecCeEEEEEeC--CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceE
Confidence 3221 1112256788 47788988874 45666666554444444431123333444446789999987 45666
Q ss_pred EEEccCCceEEEEecCCCCCcccc
Q psy5792 349 SMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 349 ~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.++.+|....+++-.-....|.++
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~ 260 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSI 260 (370)
T ss_pred EEecCCCCCceEeeccccCCcccc
Confidence 788887655555544444455544
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=90.00 E-value=6.4 Score=37.30 Aligned_cols=199 Identities=10% Similarity=0.106 Sum_probs=110.6
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.++.+++..+ |+...+++... ..+ .+-+...+++-.. .+.+|-|.-..-.|+-...+ ....-..
T Consensus 121 ~~~tvgdDKt--vK~wk~~~~p~---~ti---lg~s~~~gIdh~~-~~~~FaTcGe~i~IWD~~R~--~Pv~sms----- 184 (433)
T KOG0268|consen 121 SFFTVGDDKT--VKQWKIDGPPL---HTI---LGKSVYLGIDHHR-KNSVFATCGEQIDIWDEQRD--NPVSSMS----- 184 (433)
T ss_pred ceEEecCCcc--eeeeeccCCcc---eee---ecccccccccccc-ccccccccCceeeecccccC--Cccceee-----
Confidence 3566666665 77776665422 111 2223345555443 45566554332234333222 2222222
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
-+......+.+.+..-+|.-+-...+.|...++.-.. .+.++.. -.+.+|+-+| +++.|.+-.. ...++..+|
T Consensus 185 --wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnP-eafnF~~a~E-D~nlY~~Dm 258 (433)
T KOG0268|consen 185 --WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNP-EAFNFVAANE-DHNLYTYDM 258 (433)
T ss_pred --cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee--ccccceecCc-cccceeeccc-cccceehhh
Confidence 2444567788888888887777777889888886542 2333322 3589999999 8999998643 467777766
Q ss_pred CCCCeEEEEecC-CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 309 DGKKQTILAQEI-IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 309 dG~~~~~l~~~~-~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.--.+..-+..+ ......+... .+|+=+++-+ ...+|.....+.+..+.+.....+.|-|.+
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfs-ptG~Efvsgs-yDksIRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGS-YDKSIRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred hhhcccchhhcccceeEEEeccC-CCcchhcccc-ccceEEEeecCCCcchhhhhHhhhheeeEE
Confidence 532222222211 1111122222 2355556666 667777777777766666666666666654
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=89.84 E-value=18 Score=34.33 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=45.3
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEE-EcCCCCceEEEc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSIN 85 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~-td~~~~~I~~~~ 85 (377)
.++++++++|+.+++ |.+-+....|...|+... ..++. +......|++|..-.-|. +-.....|...|
T Consensus 151 lgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred cceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEeec--chhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 368999999998644 456666788888899877 44443 567788999994443333 223444555556
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=22 Score=34.53 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P 324 (377)
.+.||++.. .+.+...++..... +-...+..+..++++ .+.||+.+. ..++...+.. |+.....-...-...
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~--~W~~~~~~~~~~~~~--~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQI--VWKREYGSVNDFAVD--GGRIYLVDQ--NDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCE--EEeecCCCccCcEEE--CCEEEEEcC--CCeEEEEECCCCcEEEcccccCCCcc
Confidence 578888765 36788888754321 111123334455663 689999874 4688888775 322111100000111
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
...++ .+++||..+. .+.|..++.+.+
T Consensus 329 ~sp~v--~~g~l~v~~~--~G~l~~ld~~tG 355 (394)
T PRK11138 329 TAPVL--YNGYLVVGDS--EGYLHWINREDG 355 (394)
T ss_pred cCCEE--ECCEEEEEeC--CCEEEEEECCCC
Confidence 22333 3578888875 467888877544
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=88.54 E-value=25 Score=34.10 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=112.0
Q ss_pred CCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCC
Q psy5792 58 AAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLS 134 (377)
Q Consensus 58 ~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~ 134 (377)
...|..... .++.+..|-...+....-+ .+++...++....+-.+-.+++|.. +..|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~----------------~~~~---- 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD----------------SDLN---- 233 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC----------------Cccc----
Confidence 445655443 6778888887778888888 7887777777666633333456642 1111
Q ss_pred CccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCC-CcEEEE
Q psy5792 135 KVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDH-GTISRT 212 (377)
Q Consensus 135 ~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~-~~I~~~ 212 (377)
+.+....|.++-..++.... +.-+. ...+...++|++.+++|-=+.... =+++
T Consensus 234 ------------------lat~s~Dgtvklw~~~~e~~-----l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW-- 288 (459)
T KOG0272|consen 234 ------------------LATASADGTVKLWKLSQETP-----LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW-- 288 (459)
T ss_pred ------------------eeeeccCCceeeeccCCCcc-----hhhhhcchhhheeeeecCCCceeeecccccchhhc--
Confidence 11222222344444444311 11112 234688899999766665443321 1232
Q ss_pred EcCCCCcEEEEeccccCCCCC-CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 213 HRDGTGRENIIEYVETGDPTP-VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~-~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
++.. ..+.+.. ++ -....+||+.+ .|.|--|-.....=.+=++....+..++.+.+....+++.+| +|+
T Consensus 289 D~~t-k~ElL~Q-------EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy 358 (459)
T KOG0272|consen 289 DLET-KSELLLQ-------EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGY 358 (459)
T ss_pred cccc-chhhHhh-------cccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-Cce
Confidence 3331 2233332 22 33488899985 677766655433223346655555566666788889999998 899
Q ss_pred EEEEecCC-CCeEEEEecCC
Q psy5792 292 LFWSESGK-IPLIARAGLDG 310 (377)
Q Consensus 292 lywtd~g~-~~~I~r~~ldG 310 (377)
..-|-.++ ..+|+...+..
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred EEeecCCCCcEEEeeecccc
Confidence 88886543 34666655443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=88.40 E-value=25 Score=34.04 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=73.7
Q ss_pred cEEEEEeCCC-CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 150 DFILFSVNSG-YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 150 ~~l~~s~~~~-~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
.+|+.++.++ -.+..++|+.... .| +...++ .+..|.-+.+.+..+|+.. ....+.+++++....+.+...
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i--~Q-LTdg~g-~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~--- 120 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEI--TQ-LTDGPG-DNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEV--- 120 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EE--EE----SS--B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE----
T ss_pred EEEEEeccCCCcceEEEEcccCEE--EE-CccCCC-CCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEEC---
Confidence 3555555221 2488888887643 21 211111 2222444556688887765 346899999987665555541
Q ss_pred CCCCCCCCcceEE-EeccCCeEEEEc----------------------CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEE
Q psy5792 229 GDPTPVDQFTDIA-VDWIAQNIYWSD----------------------PKENVIEVARLTGQYRYVLISGGVDQPSALAV 285 (377)
Q Consensus 229 ~~~~~~~~p~~ia-vD~~~~~lYwtd----------------------~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav 285 (377)
+.... ..+-. ++. .+.+++.- .-..+|..+++.+...++++... ..-.-+-.
T Consensus 121 --p~~~~-g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~f 195 (386)
T PF14583_consen 121 --PDDWK-GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQF 195 (386)
T ss_dssp ---TTEE-EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEE
T ss_pred --Ccccc-cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCccc
Confidence 01111 11222 221 23232211 01258999999988888887753 22223333
Q ss_pred cCCC-CeEEEEecC---C-CCeEEEEecCCCCeEEEEec
Q psy5792 286 DPES-GYLFWSESG---K-IPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 286 dp~~-g~lywtd~g---~-~~~I~r~~ldG~~~~~l~~~ 319 (377)
.|.. ..|-++..| . ..||+.++.||++.+.+...
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~ 234 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR 234 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC
Confidence 3332 355566554 2 35999999999988776543
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=88.37 E-value=20 Score=32.71 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCC------CCCCCcceEEEeccCCe--EEEEcCCCCEEEEEEcCC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDP------TPVDQFTDIAVDWIAQN--IYWSDPKENVIEVARLTG 266 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~------~~~~~p~~iavD~~~~~--lYwtd~~~~~I~~~~~~g 266 (377)
++.||+--..+..|.|.++...... ...- ..+... ..-..=-++|+|. +|. ||-+....+.|.+..+|-
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L-~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~ 155 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARREL-PGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDP 155 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEEC-CccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCc
Confidence 7899999888899999999854332 1111 000000 0001134799993 553 455566667899988886
Q ss_pred CeEEEE--eeCCCCCc---eeEEEcCCCCeEEEEecCC--CCeEEEE-ecC-CCCe--EEEEecCCCCceEEEEeCCCCE
Q psy5792 267 QYRYVL--ISGGVDQP---SALAVDPESGYLFWSESGK--IPLIARA-GLD-GKKQ--TILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 267 ~~~~~l--~~~~~~~P---~~iavdp~~g~lywtd~g~--~~~I~r~-~ld-G~~~--~~l~~~~~~~P~glalD~~~~~ 335 (377)
....+. ..+.+.++ .+..+ =|.||.++... ..+|.-+ ++. ++.. .+..........-|.-++.+++
T Consensus 156 ~tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~ 232 (250)
T PF02191_consen 156 ETLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKK 232 (250)
T ss_pred ccCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCe
Confidence 543221 12233333 34555 47999999653 2455433 444 2221 1222223455667888999999
Q ss_pred EEEEEeCCCCeEEEEE
Q psy5792 336 VYWCYSVGSNVLESMD 351 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~ 351 (377)
||.=|. +...++.+.
T Consensus 233 LY~wd~-G~~v~Y~v~ 247 (250)
T PF02191_consen 233 LYAWDN-GYQVTYDVR 247 (250)
T ss_pred EEEEEC-CeEEEEEEE
Confidence 998888 555554443
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.21 E-value=25 Score=33.67 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=80.0
Q ss_pred EEEEEECCCCEEE--EEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe-ccCCeEEEEcCCC--CEEE
Q psy5792 188 AKVDFHAAEDYIY--WVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD-WIAQNIYWSDPKE--NVIE 260 (377)
Q Consensus 188 ~~l~~d~~~~~ly--~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD-~~~~~lYwtd~~~--~~I~ 260 (377)
..+.....+..|+ |.+...+ .+..++......+.+.. .....-+.....+.+- ..++.++|.-... ..|.
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~---e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE---ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE---EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE---ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 3344433344344 4454444 45556665444444443 1111223223344432 3455555554343 4899
Q ss_pred EEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC---CCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 261 VARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG---KIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 261 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g---~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
..+.+|...+.|..+...-=.-+.+|+.++.||++-.. ....+++++++ +...+.|.... ..-...++.+..+.+
T Consensus 264 ~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 264 LYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-GDHYSASFSPDGKYY 342 (353)
T ss_dssp EEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-STTEEEEE-TTSSEE
T ss_pred EEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-CCceEEEECCCCCEE
Confidence 99999998766655543322458899999999999754 25689999999 77776655542 221466776544433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=87.38 E-value=23 Score=32.34 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcE--EEEeccccCCCCC------CCCcceEEEeccCCe--EEEEcCCCCEEEEEEcC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRE--NIIEYVETGDPTP------VDQFTDIAVDWIAQN--IYWSDPKENVIEVARLT 265 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~--~i~~~~~~~~~~~------~~~p~~iavD~~~~~--lYwtd~~~~~I~~~~~~ 265 (377)
++.||+....+..|.|.++...... ..+. .+.-... -..=-++|+|. +|. ||-|....+.|.+..++
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp--~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~ivvSkLn 159 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLN--GAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGKIVISKLN 159 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecC--ccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCCEEEEeeC
Confidence 7899998888889999999854322 1111 0000000 01124799994 453 56667777899999998
Q ss_pred CCeEEEE--eeCCCCCc---eeEEEcCCCCeEEEEecC--CCCeEEEE-ecCCCC-eEEEE--ecCCCCceEEEEeCCCC
Q psy5792 266 GQYRYVL--ISGGVDQP---SALAVDPESGYLFWSESG--KIPLIARA-GLDGKK-QTILA--QEIIMPIKDITLDRKNK 334 (377)
Q Consensus 266 g~~~~~l--~~~~~~~P---~~iavdp~~g~lywtd~g--~~~~I~r~-~ldG~~-~~~l~--~~~~~~P~glalD~~~~ 334 (377)
-....+. -.+...++ .++.| =|.||.++.. ...+|.-+ +..... ....+ .+....-.-|.-.+.++
T Consensus 160 p~tL~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~ 236 (255)
T smart00284 160 PATLTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDR 236 (255)
T ss_pred cccceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCC
Confidence 7554332 22233333 45555 3799999852 24566544 444322 22212 11223334477788889
Q ss_pred EEEEEEeCCCCeEE
Q psy5792 335 RVYWCYSVGSNVLE 348 (377)
Q Consensus 335 ~LYw~d~~~~~~i~ 348 (377)
+||.=|. +.-.++
T Consensus 237 ~LY~wdn-g~~l~Y 249 (255)
T smart00284 237 KLYAWNN-GHLVHY 249 (255)
T ss_pred eEEEEeC-CeEEEE
Confidence 9998877 443333
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=86.98 E-value=22 Score=31.66 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=70.3
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCCCCC--CCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDPTPV--DQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~--~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
++.++ |.| ++.+|.+-.....|+-.++.-.. ..++-. ..+..++ ....+++||+ +++|..+-.....-+..
T Consensus 185 hilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~---~~~~~glessavaav~vdp-sgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 185 HILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN---DFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLY 258 (350)
T ss_pred cEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccC---cccCCCcccceeEEEEECC-CcceeeeccCCCceEEE
Confidence 34444 344 67788776666666655554211 111111 0000222 2377899997 67788888877788888
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
++.|.....-........+.+-+.|..-+|.-..+ ..+|...++.|.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~sy--d~~ikltdlqgd 305 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY--DMKIKLTDLQGD 305 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecc--cceEEEeecccc
Confidence 88886543222223455788888885555554443 468888888875
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=86.09 E-value=44 Score=34.33 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=118.9
Q ss_pred cCCcCCCcC---CCcEEEEEeCCCCeEEEEEcCCCCcee---eEEEE--ec--CCCCceEEEEEECCCCEEEEEEcCCCc
Q psy5792 139 AAKVDFHAG---ISDFILFSVNSGYDIMGIKYNKNESKV---TQVLG--PL--SKVSLAAKVDFHAAEDYIYWVDIDHGT 208 (377)
Q Consensus 139 ~~G~~~C~~---~~~~l~~s~~~~~~I~~~~l~~~~~~~---~~~~~--~~--~~~~~~~~l~~d~~~~~ly~sd~~~~~ 208 (377)
...|.+|.+ .+.+++.+.+-.++|.--+++....+. .+.+. .+ ..-..++++|... .+.++++-...+-
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccc
Confidence 456778874 355677776655567777776431100 00000 00 1112356776654 4567666544455
Q ss_pred EEEEEcCCC-CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 209 ISRTHRDGT-GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 209 I~~~~~~G~-~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
|...+.... ....+. ....+++.|-++.. |+=..+-+..++|..-++.-+.+..-+...-...+++..+|
T Consensus 195 lr~wDprt~~kimkLr--------GHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLR--------GHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred eEEeccccccceeeee--------ccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 555555422 222222 23456888888854 44446777788999999988765433332344589999999
Q ss_pred CCCeEEEEecCCCCeEEEEecCCC-CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 288 ESGYLFWSESGKIPLIARAGLDGK-KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~ldG~-~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.-.++|..+. ...|+|.+|... ..+.|..++ ....-+.++...+.+ |+-. ....|.+-...
T Consensus 266 sf~~vYsG~r--d~~i~~Tdl~n~~~~tlick~d-aPv~~l~~~~~~~~~-WvtT-tds~I~rW~~~ 327 (735)
T KOG0308|consen 266 SFTHVYSGGR--DGNIYRTDLRNPAKSTLICKED-APVLKLHLHEHDNSV-WVTT-TDSSIKRWKLE 327 (735)
T ss_pred CcceEEecCC--CCcEEecccCCchhheEeecCC-CchhhhhhccccCCc-eeee-ccccceecCCc
Confidence 8899999875 579999999874 444444432 333446665444555 7777 77777776554
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=86.08 E-value=52 Score=35.14 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=91.2
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
-..+.+|+.+..|+.++. ++.|...+.... ..+.+-. .-....+||.+ .+.|.+-..++.|.+...
T Consensus 16 ~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~---s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDI--------SGELVSSIACY---SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhc--------cCceeEEEeec---ccceEEeeccceEEEeeC
Confidence 467888998888887764 566666655432 2223221 11236677776 336677777889999998
Q ss_pred CCCeEEEEeeCCCCC-ceeEEEcCCCCeEEEEecCCCCeEEEEecCC-CCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 265 TGQYRYVLISGGVDQ-PSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~-P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
+......++.- +.- .+.++++. +|.+-.+-. +.-.|...+++. +..+++-.- -....+|.+|+.++.|-.+.
T Consensus 84 ps~~~~~iL~R-ftlp~r~~~v~g-~g~~iaags-dD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss-- 157 (933)
T KOG1274|consen 84 PSGEEDTILAR-FTLPIRDLAVSG-SGKMIAAGS-DDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSS-- 157 (933)
T ss_pred CCCCccceeee-eeccceEEEEec-CCcEEEeec-CceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEe--
Confidence 87665555543 333 48889985 444433322 345677777654 444444332 24456788887655555544
Q ss_pred CCCeEEEEEccC
Q psy5792 343 GSNVLESMDYSG 354 (377)
Q Consensus 343 ~~~~i~~~~~~G 354 (377)
..+.|...+++-
T Consensus 158 ~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 158 CDGKVQIWDLQD 169 (933)
T ss_pred cCceEEEEEccc
Confidence 577888887763
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=85.60 E-value=42 Score=33.62 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
..+.+.+|++.+.+..|| +-...+.|..-+......-.+ -.....+..+++.+. .+.||-.-|. ..+.+..+.+.
T Consensus 319 HnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~~~~~t~g~D--d~l~~~~~~~~ 394 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-SGELFTIGWD--DTLRVISLKDN 394 (603)
T ss_pred cccceeEEEEcCCCCEEE-eeccCceEEEEecCCccccccccccccceEEEEeecC-CCcEEEEecC--CeEEEEecccC
Confidence 456688999987666565 444557777666544332223 234456678888873 6888887764 46666655332
Q ss_pred C--eEEEEecCCCCceEEEEeCCCCEEEE
Q psy5792 312 K--QTILAQEIIMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 312 ~--~~~l~~~~~~~P~glalD~~~~~LYw 338 (377)
. ....+.- -.||.|+++...++.+..
T Consensus 395 ~~t~~~~~~l-g~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 395 GYTKSEVVKL-GSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred cccccceeec-CCCceeEEEcCCCCEEEE
Confidence 2 2222222 246777777644333333
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=85.48 E-value=35 Score=32.70 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P 324 (377)
++.+|.+... +.+...++..... +-......+...+++ +++||+.+. .+.|...+.+ |..........-...
T Consensus 241 ~~~vy~~~~~-g~l~a~d~~tG~~--~W~~~~~~~~~p~~~--~~~vyv~~~--~G~l~~~d~~tG~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 241 GGQVYAVSYQ-GRVAALDLRSGRV--LWKRDASSYQGPAVD--DNRLYVTDA--DGVVVALDRRSGSELWKNDELKYRQL 313 (377)
T ss_pred CCEEEEEEcC-CEEEEEECCCCcE--EEeeccCCccCceEe--CCEEEEECC--CCeEEEEECCCCcEEEccccccCCcc
Confidence 6788887653 6788888743321 111112234455553 689999873 4788888874 432221111000011
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
...++ .+++||..+. .+.|..++.+
T Consensus 314 ssp~i--~g~~l~~~~~--~G~l~~~d~~ 338 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDF--EGYLHWLSRE 338 (377)
T ss_pred ccCEE--ECCEEEEEeC--CCEEEEEECC
Confidence 12233 3578888765 4678777775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=85.18 E-value=57 Score=34.84 Aligned_cols=271 Identities=10% Similarity=0.051 Sum_probs=135.0
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCC--c-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEV--K-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG--~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.-+++++|+++.+|+..+++ +.|+..+-.. . .++|- ....-..+++.+.+ .|.+-..++.|.+.. .+|+.-.
T Consensus 15 G~t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETID--ISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred ceEEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhh--ccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCccc
Confidence 46789999999988777664 3455543221 2 44442 13445667777776 455556678899888 7776655
Q ss_pred EEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCc
Q psy5792 93 VLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172 (377)
Q Consensus 93 ~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~ 172 (377)
++..-..|.....++.++. .+.+.++...|..++++....
T Consensus 91 iL~Rftlp~r~~~v~g~g~----------------------------------------~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGK----------------------------------------MIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred eeeeeeccceEEEEecCCc----------------------------------------EEEeecCceeEEEEeccccch
Confidence 5544333322222222211 222222222366677665544
Q ss_pred eeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc-ceEEEeccCCeEE
Q psy5792 173 KVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF-TDIAVDWIAQNIY 250 (377)
Q Consensus 173 ~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p-~~iavD~~~~~lY 250 (377)
+ ..+.+ -....+++||+.++.|-.++ .+|.+...+++....................++ .-+|-.+.++.+-
T Consensus 131 ~-----~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 131 E-----KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred h-----eeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 1 11122 23467899999666666555 568888888763221111110000000111222 2344555555543
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCC-CC-CceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe----EEEEec-CCCC
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGG-VD-QPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ----TILAQE-IIMP 323 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~-~~-~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~----~~l~~~-~~~~ 323 (377)
+. ...+.|.+++.+|-...-.+... .. .-..++.+|.+ .|.+-....+.|-..+.+--.+ ..+.-. =-.+
T Consensus 205 ~~-~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 205 VP-PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred ee-ccCCeEEEEccCCceeheeecccccccceEEEEEcCCC--cEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 32 33467888888876543333322 11 14667777742 2444332345665555552111 111111 0123
Q ss_pred ceEEEEeCCCCEEEEEE
Q psy5792 324 IKDITLDRKNKRVYWCY 340 (377)
Q Consensus 324 P~glalD~~~~~LYw~d 340 (377)
.++|+++...++++++.
T Consensus 282 ~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 282 ANAITLITALGTLGVSP 298 (933)
T ss_pred CCeeEEEeeccccccCh
Confidence 45677766666666543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=84.72 E-value=45 Score=33.24 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=88.4
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
.+++....+.|+..++..... .+..+ ....-+.+++|.+.+ .+..+-...+.|+..++........+.
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~----~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~------ 285 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGR----NLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLK------ 285 (456)
T ss_pred EEEEecCCceEEEeeccCCCe----EEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeee------
Confidence 455555555677777722211 12222 223447899999977 677776677888888887544333333
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--EEeeCCCCCc---eeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--VLISGGVDQP---SALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--~l~~~~~~~P---~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
..-....++++.. .++++++....+.|.+-++...... ..+.. ...| +.+..+|...+++..-. ...+.-
T Consensus 286 -~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~--d~~~~~ 360 (456)
T KOG0266|consen 286 -GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASL--DRTLKL 360 (456)
T ss_pred -ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecC--CCeEEE
Confidence 3445688999995 6777788777899999999887732 23332 3334 88888885555555432 344444
Q ss_pred EecC
Q psy5792 306 AGLD 309 (377)
Q Consensus 306 ~~ld 309 (377)
.++.
T Consensus 361 w~l~ 364 (456)
T KOG0266|consen 361 WDLR 364 (456)
T ss_pred EEcc
Confidence 4444
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=83.88 E-value=34 Score=33.18 Aligned_cols=121 Identities=11% Similarity=0.031 Sum_probs=64.5
Q ss_pred eEEEEcCC-CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC-ce
Q psy5792 248 NIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP-IK 325 (377)
Q Consensus 248 ~lYwtd~~-~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~-P~ 325 (377)
.||.++.. ...++.++|+....+.|........-|..+.|....+||... ..++.+++++....+++..-.-.+ ..
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e~~~vy~~p~~~~g~ 127 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN--GRSLRRVDLDTLEERVVYEVPDDWKGY 127 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET--TTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC--CCeEEEEECCcCcEEEEEECCcccccc
Confidence 35555543 346888899888877777654343446777788899988753 469999999987776666532111 22
Q ss_pred EEE-EeCCCCEEEEEEe--------------------CCCCeEEEEEccCCceEEEEecCC-CCCcc
Q psy5792 326 DIT-LDRKNKRVYWCYS--------------------VGSNVLESMDYSGGSKMQLKLSSN-IKNAL 370 (377)
Q Consensus 326 gla-lD~~~~~LYw~d~--------------------~~~~~i~~~~~~G~~~~~~~~~~~-~~~p~ 370 (377)
|-. ++.....+.-++. .-..+|..+++.++..++++.... +.|+.
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~ 194 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQ 194 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcc
Confidence 322 3433333322211 023589999999998888876443 56653
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=83.62 E-value=38 Score=33.42 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=35.4
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-C-----------CCCCCCcceEEEeccCCeEEEEc
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-D-----------PTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~-----------~~~~~~p~~iavD~~~~~lYwtd 253 (377)
.++.|.+...+..||+++...|.|+..++.....-.++...... . ..-.+.|.-|.+-+.+++||||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46677777779999999999999999998754333332210000 0 01113477778888899999998
Q ss_pred CC
Q psy5792 254 PK 255 (377)
Q Consensus 254 ~~ 255 (377)
+-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 63
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=83.45 E-value=49 Score=32.67 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=100.5
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
+.-|+.+...+|-|+.+++..... +-.+ +......-+-|.+.++.++.+-.....+...++++...+.-+.
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~i-----LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--- 150 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVI-----LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--- 150 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHH-----HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---
Confidence 345666666667788888544211 0001 1112244566677788888876555566666776544221222
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
..-.-.+..++-+.++.|.+|-.-.++|...+..... ..+.+-+-..|-.-.+--.+|-++.+-.| +.+...+
T Consensus 151 ----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWD 223 (487)
T KOG0310|consen 151 ----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWD 223 (487)
T ss_pred ----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEE
Confidence 2223488889988999999999999999988887653 22333234455444443357778877654 5666667
Q ss_pred cCCCCeEEEEecC-CCCceEEEEeCCCCEEEEE
Q psy5792 308 LDGKKQTILAQEI-IMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 308 ldG~~~~~l~~~~-~~~P~glalD~~~~~LYw~ 339 (377)
+-+.++..--..+ ....+.|.+-..+.+|+-.
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence 6643332211111 1234556665555666654
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.69 E-value=38 Score=30.88 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=59.4
Q ss_pred EcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEE--eccCCeEEEE-cCCCCEEEEEEc----CCCeEEEEe
Q psy5792 203 DIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAV--DWIAQNIYWS-DPKENVIEVARL----TGQYRYVLI 273 (377)
Q Consensus 203 d~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iav--D~~~~~lYwt-d~~~~~I~~~~~----~g~~~~~l~ 273 (377)
|...++|....+|+.. .+.+. ....+...++..|+|+++ ++.++-.|+- +...+.|....+ +|+....++
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sit-D~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v 198 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESIT-DSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV 198 (364)
T ss_pred cccCCeEEEEEeCCCccceeecc-CCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee
Confidence 3345566655555432 22222 222223356778999988 4444544432 333466776665 233333344
Q ss_pred eC--CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 274 SG--GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 274 ~~--~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
.. --.+-.|+..|-..|.||.++. .-.||+...+
T Consensus 199 R~fk~~tQTEG~VaDdEtG~LYIaeE--dvaiWK~~Ae 234 (364)
T COG4247 199 RQFKIPTQTEGMVADDETGFLYIAEE--DVAIWKYEAE 234 (364)
T ss_pred EeeecCCcccceeeccccceEEEeec--cceeeecccC
Confidence 32 1235689999999999999985 4678887654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=82.58 E-value=39 Score=30.93 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=67.4
Q ss_pred EEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce----EEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 190 VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD----IAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~----iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
-++++..+.||++-. .|.+.+++.+-....++..+... ..-++.|.. +.+-.++|+|---+.....|++....
T Consensus 141 P~i~~g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~~--~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATRF--GPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred ceecCCCceEEEEec-cceEEEEccCCCCcceehhhhcC--CccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 345666889998874 57777777654322333221000 011223221 11211234443333333445555555
Q ss_pred CCe----------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE
Q psy5792 266 GQY----------RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 266 g~~----------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~ 335 (377)
|.. ++++.-. .+--=++.-|..|.|-|.+. .+...++.++..-+-.+.+-...+|.=|+.-...++
T Consensus 218 GpIf~~Pc~s~Ps~q~i~~~--~~~Cf~~~~p~~ghL~w~~~--~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgk 293 (354)
T KOG4649|consen 218 GPIFMEPCESRPSCQQISLE--NENCFCAPLPIAGHLLWATQ--SGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGK 293 (354)
T ss_pred CceecccccCCCcceEEEEe--cCCeEEEeccccceEEEEec--CCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCc
Confidence 531 1222111 11223556677899999984 345556666654443333333333444555555566
Q ss_pred EEEE
Q psy5792 336 VYWC 339 (377)
Q Consensus 336 LYw~ 339 (377)
+.+.
T Consensus 294 v~il 297 (354)
T KOG4649|consen 294 VMIL 297 (354)
T ss_pred EEEE
Confidence 6655
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=82.56 E-value=41 Score=31.19 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=86.5
Q ss_pred EEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCce
Q psy5792 202 VDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPS 281 (377)
Q Consensus 202 sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~ 281 (377)
+.....+.--.++....+...+. ...+.+-+|++-+.+.|.|++-.-......-++....+..-+.+......
T Consensus 161 T~SGD~TCalWDie~g~~~~~f~-------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN 233 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQTQVFH-------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN 233 (343)
T ss_pred ecCCCceEEEEEcccceEEEEec-------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence 33344455555665434444444 35566888888888899999987766666666655554444444556688
Q ss_pred eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC--CCCceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 282 ~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~--~~~P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
++.+.| +|+-|.|-. +.......++.......+.+.. ....+++++. ..+||.++-. ...++..
T Consensus 234 sv~ffP-~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy-~d~~c~v 299 (343)
T KOG0286|consen 234 SVRFFP-SGDAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGY-DDFTCNV 299 (343)
T ss_pred eEEEcc-CCCeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeee-cCCceeE
Confidence 999998 788888854 2455666666655554444442 3445778885 5688888755 4433333
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=81.63 E-value=61 Score=32.50 Aligned_cols=179 Identities=14% Similarity=0.041 Sum_probs=97.1
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETG 229 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~ 229 (377)
.+++....|.|..-+...... ..+.+-.....+.+++... .+.||-.. ..+.++++.+.+.. ....+.
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~-~~~~~t~g-~Dd~l~~~~~~~~~~t~~~~~~----- 403 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASE-SGELFTIG-WDDTLRVISLKDNGYTKSEVVK----- 403 (603)
T ss_pred EEEeeccCceEEEEecCCccc---cccccccccceEEEEeecC-CCcEEEEe-cCCeEEEEecccCcccccceee-----
Confidence 344444444565554433222 1222222334466776653 25555443 45678887775432 222222
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE-cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR-LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~-~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
--.+|.++|+....+.+..+... .|...+ ..+-.. +. -..+|.++|+.|....+-+- |+..++....+
T Consensus 404 ---lg~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~~~~---~~-~~y~~s~vAv~~~~~~vaVG--G~Dgkvhvysl 472 (603)
T KOG0318|consen 404 ---LGSQPKGLAVLSDGGTAVVACIS--DIVLLQDQTKVSS---IP-IGYESSAVAVSPDGSEVAVG--GQDGKVHVYSL 472 (603)
T ss_pred ---cCCCceeEEEcCCCCEEEEEecC--cEEEEecCCccee---ec-cccccceEEEcCCCCEEEEe--cccceEEEEEe
Confidence 22369999999655565555443 244444 222111 11 24569999999976655544 45678888888
Q ss_pred CCCCeEEE--EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 309 DGKKQTIL--AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 309 dG~~~~~l--~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.|...... ..+-...++.++..+....|--+|. .+++.-.+..
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da--~rkvv~yd~~ 517 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA--SRKVVLYDVA 517 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEecc--CCcEEEEEcc
Confidence 88653222 1222456788888877777777776 3444444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=80.56 E-value=87 Score=33.62 Aligned_cols=194 Identities=8% Similarity=0.019 Sum_probs=98.4
Q ss_pred ccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 19 ASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.+++.....+....+-...+.|...|+... ...+. .+....+++++. ++.+++|-..++.|...+ .++.....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 344444433344444555677888887755 44442 445567888884 566777777778888888 55554444
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
+.....+..+....++ ..++++....|.|+..++.....
T Consensus 614 ~~~~~~v~~v~~~~~~----------------------------------------g~~latgs~dg~I~iwD~~~~~~- 652 (793)
T PLN00181 614 IKTKANICCVQFPSES----------------------------------------GRSLAFGSADHKVYYYDLRNPKL- 652 (793)
T ss_pred EecCCCeEEEEEeCCC----------------------------------------CCEEEEEeCCCeEEEEECCCCCc-
Confidence 4321112222221111 12333333344688887754321
Q ss_pred eeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC----CcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 174 VTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT----GRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 174 ~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.+..+ .....+..+.+. .+..+++-...+.|...++... ....+... . .....+..+++++. +.
T Consensus 653 ---~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~---gh~~~i~~v~~s~~-~~ 721 (793)
T PLN00181 653 ---PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--M---GHTNVKNFVGLSVS-DG 721 (793)
T ss_pred ---cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--c---CCCCCeeEEEEcCC-CC
Confidence 01111 122345667765 3334445445677777766421 11111110 0 11223567888864 44
Q ss_pred EEEEcCCCCEEEEEEcCC
Q psy5792 249 IYWSDPKENVIEVARLTG 266 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g 266 (377)
+..+-...++|.+.+...
T Consensus 722 ~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 722 YIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEEEEeCCCEEEEEECCC
Confidence 555666667777777654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=80.43 E-value=47 Score=30.43 Aligned_cols=129 Identities=9% Similarity=0.135 Sum_probs=62.6
Q ss_pred EEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC-EEEEEEcCCCe
Q psy5792 190 VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN-VIEVARLTGQY 268 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~-~I~~~~~~g~~ 268 (377)
+++|+..+.+||-..-.++|....+ ++. ++ +.+-..++.||+.+..++ +++.+..-+..
T Consensus 36 ~avd~~sG~~~We~ilg~RiE~sa~-------vvg--------df-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 36 IAVDPQSGNLIWEAILGVRIECSAI-------VVG--------DF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EEecCCCCcEEeehhhCceeeeeeE-------EEC--------CE-----EEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 4567778888886554444432111 111 11 444445677777777665 55544433321
Q ss_pred EEEEeeCCCCCceeEEEcCCCCeEEEE---------ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 269 RYVLISGGVDQPSALAVDPESGYLFWS---------ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 269 ~~~l~~~~~~~P~~iavdp~~g~lywt---------d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
. - .-..|+..|.||.. |......|++....|+- +..| +|++-.+.||++
T Consensus 96 k----------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--------f~sP---~i~~g~~sly~a 153 (354)
T KOG4649|consen 96 K----------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--------FVSP---VIAPGDGSLYAA 153 (354)
T ss_pred c----------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--------eccc---eecCCCceEEEE
Confidence 1 0 01233334444443 32222344443333321 2222 344455677777
Q ss_pred EeCCCCeEEEEEccCCceEEEEe
Q psy5792 340 YSVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 340 d~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
-. .+.+.+++.+-...+++..
T Consensus 154 ~t--~G~vlavt~~~~~~~~~w~ 174 (354)
T KOG4649|consen 154 IT--AGAVLAVTKNPYSSTEFWA 174 (354)
T ss_pred ec--cceEEEEccCCCCcceehh
Confidence 65 5666677766554455544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 377 | ||||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 2e-31 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 2e-31 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 2e-31 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-25 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 2e-25 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-25 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 3e-25 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 3e-21 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 4e-21 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 1e-15 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 2e-15 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 2e-15 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 1e-14 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 1e-14 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 2e-13 |
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 5e-50
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246
+D A + IYW D+ I T D + + V + D + +AVDWI
Sbjct: 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIH 464
Query: 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306
NIYW+D + VA G R L +P A+ VDP G+++W++ G I +
Sbjct: 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524
Query: 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
GL+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTI 577
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 1e-18
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 504 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 556
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616
Query: 312 KQTILAQEIIMP--IKDITLDRKNKRVYWCYSVGSN 345
+LA+ ++ P + + + V WC +
Sbjct: 617 DVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLS 652
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 177 bits (449), Expect = 1e-49
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Query: 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246
+D A + IYW D+ I T D + + V + D D +AVDWI
Sbjct: 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG---LAVDWIH 482
Query: 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306
NIYW+D + VA G R L +P A+ VDP G+++W++ G I +
Sbjct: 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542
Query: 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
GL+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEK 600
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 8e-19
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 574
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634
Query: 312 KQTILAQEIIMP--IKDITLDRKNKRVYWCYSVGSN 345
+LA+ ++ P + + + V WC +
Sbjct: 635 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 670
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 6e-49
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 12/211 (5%)
Query: 146 AGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID 205
AG + +L++ + D+ + + T V+G L AA VDF + IYW D+
Sbjct: 1 AGSAPLLLYA--NRRDLRLVDATNGKENATIVVGGLED---AAAVDFVFSHGLIYWSDVS 55
Query: 206 HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265
I RT + T + V +G +P +A DW+ + +YW+D + N IEV+ L
Sbjct: 56 EEAIKRTEFNKTESVQNV--VVSGLLSP----DGLACDWLGEKLYWTDSETNRIEVSNLD 109
Query: 266 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325
G R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+ I
Sbjct: 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 169
Query: 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+TLD + +++YW + N + + G +
Sbjct: 170 GLTLDYEEQKLYWADA-KLNFIHKSNLDGTN 199
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 2e-19
Identities = 54/283 (19%), Positives = 104/283 (36%), Gaps = 31/283 (10%)
Query: 76 ANDGNIRSINLDGSNSTV------LRNNAGI-----SDFILFSVNSGYDIMGIKYNKNES 124
AN ++R ++ L + A + I +S S I ++NK ES
Sbjct: 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69
Query: 125 KVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183
V+ L LA D+ + + + ++ + I + + KV
Sbjct: 70 VQNVVVSGLLSPDGLA--CDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 124
Query: 184 VSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242
++A + ++YW D + I R DG+ R I + + P + +
Sbjct: 125 RAIA----LDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSEIYWP----NGLTL 173
Query: 243 DWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302
D+ Q +YW+D K N I + L G R ++ G + P AL + L+W++ +
Sbjct: 174 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSI 231
Query: 303 IARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
+A G+ + +I P+ ++ + N
Sbjct: 232 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 274
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 39/224 (17%), Positives = 60/224 (26%), Gaps = 53/224 (23%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVL-RNNAGISDFILFSVNSGYDIMGIKYNK 121
A + G +Y +D+ I NLDGS VL I +SG+
Sbjct: 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT----- 139
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
G I + G I
Sbjct: 140 -----------------------DWGEVPKIERAGMDGSSRFII--------------IN 162
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
S++ + E +YW D I +++ DGT R V+ P P A
Sbjct: 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHP------FA 213
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV 285
+ +YW+D + I I + P +
Sbjct: 214 LTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-48
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
++ F+ + +++ + +++E + + +D A + IYW D+ I
Sbjct: 3 YLFFT--NRHEVRKMTLDRSEYTS-----LIPNLRNVVALDTEVASNRIYWSDLSQRMIC 55
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
T D + + V + D + +AVDWI NIYW+D + VA G R
Sbjct: 56 STQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 112
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
L +P A+ VDP G+++W++ G I + GL+G L E I ITLD
Sbjct: 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGS 356
+ R+YW S + + S+D +GG+
Sbjct: 173 LLSGRLYWVDS-KLHSISSIDVNGGN 197
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 1e-18
Identities = 46/286 (16%), Positives = 91/286 (31%), Gaps = 32/286 (11%)
Query: 76 ANDGNIRSINLDGSNSTVLRNNAG---------ISDFILFSVNSGYDIMGIKYNKNESKV 126
N +R + LD S T L N S+ I +S S I + ++
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66
Query: 127 QQVLGPLSKV----SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182
+ LA VD+ I I ++ + + + K
Sbjct: 67 SYDTVISRDIQAPDGLA--VDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 183 KVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
++ ++YW D I + +G ++ V P I
Sbjct: 122 PRAIV----VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTENIQWP----NGIT 170
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 301
+D ++ +YW D K + I + G R ++ ++ +FW++
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 302 LIARAGLDGKKQTILAQEIIMPIKDITLD--RKNKRVYWCYSVGSN 345
+ + L G +LA+ ++ P + + + V WC +
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 276
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 4e-48
Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 191 DFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250
DFH + ++W D+ I R + +G+ E ++ T ++ +AVDW+ +Y
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGGLAVDWVHDKLY 174
Query: 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310
W+D + IEVA L G +R VL+ +++P A+A+ P G ++W++ G P I + +DG
Sbjct: 175 WTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234
Query: 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ I+A + +T+D +R+YW + +V+E + G + +
Sbjct: 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDA-KHHVIERANLDGSHRKAV 283
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 5e-19
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
H E IYW D + I + DG+GR I +T P + +D+ + +YW
Sbjct: 210 HPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTHLFWP----NGLTIDYAGRRMYW 262
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K +VIE A L G +R +IS G+ P A+ V L+W++ + + GK
Sbjct: 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGK 320
Query: 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
Q I+ ++ P+ TL + + +N
Sbjct: 321 NQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNN 354
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 8e-15
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292
++ + + ++WSD + I A L G ++S G++ P LAVD L
Sbjct: 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173
Query: 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352
+W++SG I A LDG + +L + + + I L +YW + +E+
Sbjct: 174 YWTDSGT-SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232
Query: 353 SGGSKMQLKLSSNIK--NAL-LDRKS 375
G + + +++ N L +D
Sbjct: 233 DGSGRRII-ADTHLFWPNGLTIDYAG 257
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 171 bits (433), Expect = 5e-48
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 14/220 (6%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
F+LFS DI I N + V PL+ V A+ +DF ++ IYW DI TIS
Sbjct: 8 FLLFS--RRADIRRISLETNNNNVAI---PLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
R +G+ E+++E G P +AVDW+ +N+YW+D N IEV++L GQ+R
Sbjct: 63 RAFMNGSALEHVVE---FGLDYP----EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L + +T+D
Sbjct: 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRAN-GLTID 174
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNAL 370
+R+YW +N++ES + G ++ + L
Sbjct: 175 YAKRRLYWTDL-DTNLIESSNMLGLNREVIADDLPHPFGL 213
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 3e-45
Identities = 61/307 (19%), Positives = 126/307 (41%), Gaps = 13/307 (4%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSN--STVLRNNAGISDFILFSVNSGYDIMGIKYNKNE 123
Y+ I ++D + +I N + + + + D ++F + +
Sbjct: 215 QYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGH 274
Query: 124 SKVQQVLGPLSKVSLAAKV------DFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV 177
+ P+ D + + I + ++ +S +
Sbjct: 275 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQS--PDI 332
Query: 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237
+ P+ + +D+ + +YW+D I + DG+ ++ Q
Sbjct: 333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVV-SSVPSQNLEIQP 391
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 297
D+++D ++ IYW+ NVI V RL G+ V++ G D+P A+ V+PE GY++++
Sbjct: 392 YDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL 451
Query: 298 GKI-PLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+ P I RA LDG ++ +L + + LD + +++W S +ES D SG +
Sbjct: 452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS-DLRRIESSDLSGAN 510
Query: 357 KMQLKLS 363
++ L+ S
Sbjct: 511 RIVLEDS 517
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 3e-17
Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 50/272 (18%)
Query: 59 AQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIK 118
+ + ++ + D+ IR DGS + ++ S N +
Sbjct: 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQ------NLEIQPYDLS 395
Query: 119 YNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178
+ S +I ++ + I + + V +
Sbjct: 396 IDI--------------------------YSRYIYWTCEATNVINVTRLDGRSVGVV-LK 428
Query: 179 GPLSKV-SLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVD 235
G + ++ + + Y+Y+ ++ I R DGT RE + +G P+
Sbjct: 429 GEQDRPRAVV----VNPEKGYMYFTNLQERSPKIERAALDGTEREVL---FFSGLSKPIA 481
Query: 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295
+A+D ++W+D IE + L+G R VL + QP L V +L+W
Sbjct: 482 ----LALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF--ENWLYWI 535
Query: 296 ESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327
+ + +I + + G++ Q I + DI
Sbjct: 536 DKQQ-QMIEKIDMTGREGRTKVQARIAQLSDI 566
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 9e-08
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 38/278 (13%)
Query: 35 TLSHSLHYVNIEVKVAKVVSMPDAAQVVAAV---FYKGRIIYSDANDGNIRSINLDGSNS 91
+ + +++E V + +A+ RI ++D + I ++GS
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 92 TVLRNN-----AGIS-DFI---LFSVNSGYD-IMGIKYNKNESKV---QQVLGPLSKVSL 138
+ G++ D++ L+ ++G + I K + +V + + P +L
Sbjct: 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP---RAL 128
Query: 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDY 198
A +D G I + +E + V A + A+
Sbjct: 129 A--LDPAEGF--MYWTEWGGKPKIDRAAMDGSERTT-----LVPNVGRANGLTIDYAKRR 179
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258
+YW D+D I ++ G RE I + + + IYW+D
Sbjct: 180 LYWTDLDTNLIESSNMLGLNREVIADDLP--------HPFGLTQY--QDYIYWTDWSRRS 229
Query: 259 IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296
IE A T +I G +D + V S W+E
Sbjct: 230 IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNE 267
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-47
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 12/212 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTI 209
+LF+ I + +N K T+ L + + F + +YW DI +I
Sbjct: 3 HLLFA--QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 210 SRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR 269
R G II +P IA+D + + I+W+D + + IEVA++ G R
Sbjct: 61 GRASLHGGEPTTIIR---QDLGSP----EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113
Query: 270 YVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDIT 328
VL G+ P + DP G L+W++ + P I + +DG + ILAQ+ + +T
Sbjct: 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT 173
Query: 329 LDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
D + ++ W + G++ E ++ + + ++
Sbjct: 174 FDAFSSQLCWVDA-GTHRAECLNPAQPGRRKV 204
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 62/303 (20%)
Query: 39 SLHYVNIEVKVAKVVSMPDAAQVVA-AVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRN 96
L ++ AK A ++ A +++Y +D ++ +I +L G T +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-- 73
Query: 97 NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156
+ + G +A +D + I ++
Sbjct: 74 -----------IRQD--------------LGSPEG------IA--LDH---LGRTIFWTD 97
Query: 157 NSGYDIMGIKYNKNESKV---TQVLGPLSKVSLAAKVDFHAAEDYIYWVDI--DHGTISR 211
+ I K + + +V T ++ P + +YW D D+ I
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRG-------IVTDPVRGNLYWTDWNRDNPKIET 150
Query: 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 271
+H DGT R + + P + D + + W D + E R
Sbjct: 151 SHMDGTNRRIL---AQDNLGLP----NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK 203
Query: 272 LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331
++ G+ P A+ L++++ +IA K+ + IT+
Sbjct: 204 VLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260
Query: 332 KNK 334
Sbjct: 261 SQC 263
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 71/333 (21%), Positives = 139/333 (41%), Gaps = 17/333 (5%)
Query: 37 SHSLHYVNIEVKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR 95
+ +H N++ + V A ++ + ++D + +I + N G +
Sbjct: 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251
Query: 96 NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ--VLGPLSKVSLAAKVDFHAGISDFIL 153
++ I + ++ P+ A + +
Sbjct: 252 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT 311
Query: 154 FSVNSGYDIMG------IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG 207
+ ++ + + + T ++ L + A +D+ E YIYW D +
Sbjct: 312 CKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371
Query: 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267
I R+ DG+G + ++ + IAVDW+A+N+YW+D + IEV RL G
Sbjct: 372 AIRRSFIDGSGSQFVVT-------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424
Query: 268 YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327
R +LIS +++P A+ +DP GY++W++ G+IP I RA LDG + +L + +
Sbjct: 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGL 484
Query: 328 TLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
LD ++YW + ++ +E M+ G + L
Sbjct: 485 ALDYDEGKIYWGDA-KTDKIEVMNTDGTGRRVL 516
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-44
Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 147 GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH 206
+ +L++ + D+ + + T V+G L + VDF + IYW D+
Sbjct: 7 HHAPLLLYA--NRRDLRLVDATNGKENATIVVGGLEDAAA---VDFVFSHGLIYWSDVSE 61
Query: 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266
I RT + T + V +G +P +A DW+ + +YW+D + N IEV+ L G
Sbjct: 62 EAIKRTEFNKTESVQNV--VVSGLLSP----DGLACDWLGEKLYWTDSETNRIEVSNLDG 115
Query: 267 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 326
R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+ I
Sbjct: 116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175
Query: 327 ITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+TLD + +++YW + N + + G +
Sbjct: 176 LTLDYEEQKLYWADA-KLNFIHKSNLDGTN 204
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 4e-16
Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 32/279 (11%)
Query: 73 YSDANDGNIRSINLDGSNSTV-------LRNNAGI-----SDFILFSVNSGYDIMGIKYN 120
A ++R I+LD + T +R+ I +I ++ + I +
Sbjct: 320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID 379
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180
+ S+ +A VD+ ++ + ++ I + N K+
Sbjct: 380 GSGSQFVVTAQIAHPDGIA--VDW---VARNLYWTDTGTDRIEVTRLNGTMRKILISEDL 434
Query: 181 LSKVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239
++ Y+YW D + I R DG+ R + V T P
Sbjct: 435 EEPRAIV----LDPMVGYMYWTDWGEIPKIERAALDGSDRVVL---VNTSLGWP----NG 483
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299
+A+D+ IYW D K + IEV G R VL+ + + Y++W++ +
Sbjct: 484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQR 541
Query: 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYW 338
I R ++ ++ ++ + +
Sbjct: 542 -RSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSN 579
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 9e-15
Identities = 56/280 (20%), Positives = 104/280 (37%), Gaps = 33/280 (11%)
Query: 76 ANDGNIRSINLDGSNSTV------LRNNAGI-----SDFILFSVNSGYDIMGIKYNKNES 124
AN ++R ++ L + A + I +S S I ++NK ES
Sbjct: 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 74
Query: 125 KVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183
V+ L LA D+ + + + ++ + I + + KV
Sbjct: 75 VQNVVVSGLLSPDGLA--CDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 129
Query: 184 VSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242
++A + ++YW D + I R DG+ R I + + P + +
Sbjct: 130 RAIA----LDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSEIYWP----NGLTL 178
Query: 243 DWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302
D+ Q +YW+D K N I + L G R ++ G + P AL + L+W++ +
Sbjct: 179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSI 236
Query: 303 IARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCY 340
+A G+ + +I M I + R+ C
Sbjct: 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG 276
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 7e-05
Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 31/320 (9%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVL-----RNNAGI-----SDFILFS-VNSG 111
A + G +Y +D+ I NLDGS VL I S F+ ++
Sbjct: 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 149
Query: 112 YDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKN 170
I + + S ++ +D+ + L+ ++ + I +
Sbjct: 150 PKIE--RAGMDGSSRFIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGT 203
Query: 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230
+ +L ED +YW D +I ++ TG + +
Sbjct: 204 NRQAVVKGSLPHPFALT------LFEDILYWTDWSTHSILACNKY-TGEGLREIHSDIFS 256
Query: 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP--E 288
P + F+ + + + + + GV
Sbjct: 257 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316
Query: 289 SGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLE 348
+ L + + I+ D + ++I I I D +YW +
Sbjct: 317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAI-AIDYDPVEGYIYWT-DDEVRAIR 374
Query: 349 SMDYSGGSKMQLKLSSNIKN 368
GS Q +++ I +
Sbjct: 375 RSFI-DGSGSQFVVTAQIAH 393
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 4e-46
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 189 KVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248
+D A + IYW D+ I T D + + V + D D +AVDWI N
Sbjct: 116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD---GLAVDWIHSN 172
Query: 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308
IYW+D + VA G R L +P A+ VDP G+++W++ G I + GL
Sbjct: 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232
Query: 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 233 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEK 288
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 1e-19
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 262
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322
Query: 312 KQTILAQEI--IMPIKDITLDRKNKRVYWCYSVGSN 345
+LA+ + + + + V WC +
Sbjct: 323 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 358
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 154 bits (389), Expect = 9e-44
Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 180 PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239
L+ + A +DFH + ++W D+ I R + +G+ E ++ T ++
Sbjct: 68 LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGG 120
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299
+AVDW+ +YW+D + IEVA L G +R VL+ +++P A+A+ P G ++W++ G
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQ 359
P I + +DG + I+A + +T+D +R+YW + +V+E + G +
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA-KHHVIERANLDGSHRKA 239
Query: 360 L 360
+
Sbjct: 240 V 240
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 2e-19
Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 9/168 (5%)
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252
A + + I + + ++ +E + + ++WS
Sbjct: 39 KALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA--------IALDFHHRRELVFWS 90
Query: 253 DPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312
D + I A L G ++S G++ P LAVD L+W++SG I A LDG
Sbjct: 91 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT-SRIEVANLDGAH 149
Query: 313 QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ +L + + + I L +YW + +E+ G + +
Sbjct: 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 197
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 2e-15
Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 32/289 (11%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAG--------ISDFILFSVNSGYDIMGIKYN 120
+ AN +IR + S T+L NN ++F + D + + N
Sbjct: 43 PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRIL-RAN 101
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKNESKVTQVLG 179
N S V++V+ + VD+ L+ +SG I + KV +
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVANLDGAHRKVL-LWQ 156
Query: 180 PLSKV-SLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237
L K ++A H E IYW D + I + DG+GR I + T +
Sbjct: 157 SLEKPRAIA----LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWP 205
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 297
+ +D+ + +YW D K +VIE A L G +R +IS G+ P A+ V L+W++
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW 263
Query: 298 GKIPLIARAGL-DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
I A GK Q I+ ++ P+ TL + + +N
Sbjct: 264 HT-KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNN 311
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 54/241 (22%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKN 122
AV + +Y +D+ I NLDG++ VL
Sbjct: 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL---------------------------- 153
Query: 123 ESKVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
+ L K ++A + G ++ + G + + S +
Sbjct: 154 ------LWQSLEKPRAIA--LHPMEG----TIYWTDWGNTPRIEASSMDGSGRRIIADTH 201
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
+D+ +YWVD H I R + DG+ R+ +I G P P A
Sbjct: 202 LFWPNGLTIDYA--GRRMYWVDAKHHVIERANLDGSHRKAVI---SQGLPHP------FA 250
Query: 242 VDWIAQNIYWSDPKENVIEVA-RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300
+ ++YW+D I A + TG+ + ++ + + P+ + G
Sbjct: 251 ITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDN 310
Query: 301 P 301
Sbjct: 311 N 311
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 2e-15
Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 64 AVFYKGRIIYSDANDGN-IRSINLDGSNSTVLRNNAGIS-----DFILFSVNSGYDIMGI 117
G + +S+ ND + ++N+DGSN L N+ + +++ + N+ I
Sbjct: 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 118 KY---NKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI-KYNKNESK 173
+ ++N + G S V + + I ++I + + + + +
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE 140
Query: 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTP 233
++ + ++ Y Y+ + +G + R + P
Sbjct: 141 KKKIKNHYL-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-CNCYKPVV 192
Query: 234 VDQFTDIAVDWIAQNIYWSD-PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292
+D N+Y+ D ++N I + VL ++ + +
Sbjct: 193 LDD----------TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLI 237
Query: 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352
F+ G P + DG LA+ +I + ++ VY+ SN
Sbjct: 238 FYQRGGDNPALCVVKNDGTGFKELAKG---EFCNINVT--SQYVYFTDF-VSNKEYCTST 291
Query: 353 SGGSKMQL 360
++
Sbjct: 292 QNPDTIKA 299
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 15/166 (9%), Positives = 42/166 (25%), Gaps = 27/166 (16%)
Query: 67 YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILF-------SVNSGYDIMGIKY 119
Y++ +G + + + + + +L VN I+
Sbjct: 155 SDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRDNAIV--HV 212
Query: 120 NKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKNESKVTQVL 178
N N + ++ + I + + +K + K
Sbjct: 213 NINNPNPVVLTEA--------NIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFK----- 259
Query: 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224
+++ + + Y+Y+ D T ++
Sbjct: 260 ----ELAKGEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ +++V+I I R G E PTP + I I++++
Sbjct: 196 GNDGALWFVEIMGNKIGRITTTGE-------ISEYDIPTPNARPHAITAG-KNSEIWFTE 247
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300
N I + + +P + G ++++ KI
Sbjct: 248 WGANQIGRITNDNTIQEYQLQTENAEPHGITFGK-DGSVWFALKCKI 293
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ + +++ IS + G E PTP + + V +I++++
Sbjct: 28 SEDGKVWFTQHKANKISSLDQSGR-------IKEFEVPTPDAKVMCLIVS-SLGDIWFTE 79
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 313
N I G + + P + +G +++++ I + DG
Sbjct: 80 NGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNG-DRIGKLTADGTIY 137
Query: 314 TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV 346
ITL N +++ + +++
Sbjct: 138 EYDLPNKGSYPAFITLGSDN-ALWFTENQNNSI 169
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ + ++ IS + DG E PTP + + + +++++
Sbjct: 23 SDKGKVWITQHKANMISCINLDGK-------ITEYPLPTPDAKVMCLTIS-SDGEVWFTE 74
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I G + + P + P +G ++++E
Sbjct: 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMN 118
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+++ +++ + + I R G E PTP I +++ +
Sbjct: 150 SDNALWFTENQNNAIGRITESGD-------ITEFKIPTPASGPVGITKG-NDDALWFVEI 201
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I +G+ I +P A+ L+++E G
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITAGAG-IDLWFTEWG 244
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+D +++V+I I R G E PTP + I ++++++
Sbjct: 192 NDDALWFVEIIGNKIGRITTSGE-------ITEFKIPTPNARPHAITAG-AGIDLWFTEW 243
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287
N I I +P + D
Sbjct: 244 GANKIGRLTSNNIIEEYPIQIKSAEPHGICFDG 276
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+++ +++ + I R + G E P P I +I++++
Sbjct: 65 SSDGEVWFTENAANKIGRITKKGI-------IKEYTLPNPDSAPYGITEGP-NGDIWFTE 116
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I G+ R + PS + + L+++E+
Sbjct: 117 MNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ 160
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 37/273 (13%), Positives = 74/273 (27%), Gaps = 45/273 (16%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128
+Y R I+ + + + + I ++ + I+ N N+
Sbjct: 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208
Query: 129 VLGPLSKVSLAAKVDFHAGISDFILFSVN------SGYDIMGIKYNKNESKVTQVLGPLS 182
+L S + ++ + +N S +Y+ + T L +
Sbjct: 209 ILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQ 267
Query: 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP----------- 231
+ FH + +Y Y V ++ I R+ D + Y+ G
Sbjct: 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK 327
Query: 232 ----------TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL------ISG 275
T V + Y+ D + + I + G+ SG
Sbjct: 328 KARMHAPRQGTFVKNPAYKGSS-DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSG 386
Query: 276 GVD----------QPSALAVDPESGYLFWSESG 298
D P + D E F +
Sbjct: 387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 23/229 (10%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAGIS-------DFILFSVNSGYDIMGIKYNK 121
G I ++ G I SI DG+ +S ++ + + I + K
Sbjct: 43 GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
++ V+ +L + L L + + I I + + + P+
Sbjct: 103 SDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQPSGSIW-LEHPM 158
Query: 182 SKVSLAAKVDF-----HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQ 236
S + V +++Y + + + R D T + E + T +D
Sbjct: 159 LARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNID- 215
Query: 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALA 284
D A D + N+Y + N + + GV +A+A
Sbjct: 216 --DFAFD-VEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVA 261
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 50/427 (11%), Positives = 98/427 (22%), Gaps = 147/427 (34%)
Query: 22 LKPQSGPFVYGV----KTLSHSLHYVNIEVKVAKVVS-------MPDAAQVVAAVFYKGR 70
L+P + GV KT V M +F+
Sbjct: 147 LRPAKNVLIDGVLGSGKT-----------WVALDVCLSYKVQCKMDFK------IFW--- 186
Query: 71 IIYSDANDGNIRSIN--LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128
N N S L+ + + + + S N I I+ +
Sbjct: 187 -----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 129 -------VLGPLSKVSLAAKVDFH---------AGISDFILFSVNSGYDIMGIK--YNKN 170
VL + + ++DF+ + + + +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 171 ESK--VTQVLG--------------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR 214
E K + + L P ++S+ A+ + W ++ ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTI-- 358
Query: 215 DGTGRENIIEYVETGDPTPVDQFTDIAV---D-WIAQN---IYWSDPKENVIEV------ 261
E+ + +E + F ++V I + W D ++ + V
Sbjct: 359 ----IESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 262 ----------------------------------ARLTGQYRYVLISGGVDQPSALAVDP 287
+ Y I D L
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN---IPKTFD-SDDLIPPY 468
Query: 288 ESGYLFW---------SESGKIPLIARAGLD-----GK-KQTILAQEIIMPIKDITLDRK 332
Y + ++ L LD K + A I + K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 333 NKRVYWC 339
+ Y C
Sbjct: 529 FYKPYIC 535
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.97 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.95 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.95 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.93 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.92 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.91 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.9 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.9 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.88 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.85 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.85 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.81 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.78 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.78 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.78 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.77 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.74 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.72 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.66 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.64 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.64 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.64 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.61 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.61 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.6 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.6 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.59 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.56 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.55 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.54 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.54 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.5 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.49 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.49 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.48 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.46 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.46 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.41 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.41 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.39 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.36 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.36 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.35 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.34 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.33 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.29 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.26 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.25 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.24 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.24 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.24 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.21 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.19 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.17 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.16 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.16 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.15 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.14 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.14 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.14 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.14 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.13 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.13 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.13 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.13 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.13 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.12 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.1 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.05 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.0 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.98 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.97 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.96 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.93 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.92 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.92 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.91 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.85 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.77 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.76 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.72 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.7 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.68 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.67 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.65 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.63 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.63 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.61 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.61 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.59 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.57 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.55 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.54 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.54 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.36 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.36 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.34 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.33 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.32 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.32 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.31 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.28 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.27 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.23 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.18 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.16 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.15 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.14 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.14 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.13 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.13 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.11 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.11 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.08 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.04 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.03 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.89 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.88 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.85 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.83 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.83 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.82 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.82 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.79 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.78 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.75 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.74 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.69 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.66 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.6 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.52 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.48 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.45 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.44 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.44 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.44 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.43 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.41 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.41 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.39 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.35 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.35 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.34 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.32 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.32 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.31 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.25 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.23 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.23 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.2 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.19 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.19 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.19 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.17 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.14 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.09 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.08 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.07 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.07 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.02 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.9 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.85 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.8 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.76 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.75 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.74 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 96.71 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.54 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.51 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.51 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.45 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 96.41 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.4 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.4 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.4 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.39 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.36 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.31 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.25 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.25 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.18 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.16 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 96.04 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.85 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 95.84 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.67 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.66 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.65 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.59 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.52 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.44 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.43 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.41 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 95.37 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.23 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.17 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 95.05 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 94.79 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.68 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.48 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 94.24 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 93.57 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 93.5 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 93.43 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.41 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.4 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 92.95 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.82 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 92.74 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 92.73 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 92.66 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 92.63 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 92.46 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 92.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 91.75 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 91.61 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 91.4 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 91.31 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 91.27 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 90.24 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 89.64 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 89.61 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 89.61 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 89.26 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 88.92 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 88.79 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 88.74 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 88.63 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 88.61 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 88.55 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 87.79 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 86.98 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 86.04 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 84.16 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 83.32 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 80.12 |
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-62 Score=500.76 Aligned_cols=359 Identities=21% Similarity=0.361 Sum_probs=319.0
Q ss_pred ceeEeeccccCC-----------------CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEE
Q psy5792 2 GYLHVLPYTRNP-----------------SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVA 63 (377)
Q Consensus 2 ~~~~~~~~~~~~-----------------~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~ 63 (377)
|+|||.||...+ .+..|.|+++|+.+++|||+|+..+.|++++++|+ ++.+. ..+.+|+|
T Consensus 135 G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~--~~l~~P~g 212 (628)
T 4a0p_A 135 GFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA--DDLPHPFG 212 (628)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECCSCEEE
T ss_pred CeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee--ccCCCceE
Confidence 899999996433 24689999999999999999999999999999999 86654 67889999
Q ss_pred EEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCC-cCCCCCCceeccccCC-Cccc-
Q psy5792 64 AVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLS-KVSL- 138 (377)
Q Consensus 64 lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~-C~~~~g~Cs~~C~~~~-~~~~- 138 (377)
|++++++|||||+.++.|.+++ .+|+..+++..+.. |++|+++++.+| ++.| |..+||+|+|+|++.+ +++.
T Consensus 213 lav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q---~~~n~C~~~ng~C~~~C~~~~~~~~~C 289 (628)
T 4a0p_A 213 LTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQ---SGWNECASSNGHCSHLCLAVPVGGFVC 289 (628)
T ss_dssp EEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGS---CCCCTTTTTGGGCSSEEEEETTTEEEE
T ss_pred EEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeeccc---ccceEeccCCCCcchhhhcCCCCCeeE
Confidence 9999999999999999999999 88999988887777 999999999998 6889 9999999999999999 6666
Q ss_pred --cCCcC------CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEE
Q psy5792 139 --AAKVD------FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210 (377)
Q Consensus 139 --~~G~~------~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~ 210 (377)
+.||. +|.++++||+++..+. |+++.++.... ...++|+.++.++.+++||..+++|||+|...++|+
T Consensus 290 ~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~--i~~i~l~~~~~--~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~ 365 (628)
T 4a0p_A 290 GCPAHYSLNADNRTCSAPTTFLLFSQKSA--INRMVIDEQQS--PDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIR 365 (628)
T ss_dssp ECSTTCEECTTSSCEECCSSEEEEEETTE--EEEECCCTTCC--CCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EcCCCcEecccCCcCccccceeeeeccce--EEEEecccccC--ceEEEEehhcCCceEEEEecCCCeEEEEecCcceEE
Confidence 78986 9999999999999988 99999987644 346778888999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC
Q psy5792 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 211 ~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g 290 (377)
|+.++|+..+.++... ......+..|.|||+||.+++|||||...++|.+++++|+.+++++...+..|++|||||.+|
T Consensus 366 r~~~~g~~~~~v~~~~-~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g 444 (628)
T 4a0p_A 366 KAQEDGSQGFTVVVSS-VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKG 444 (628)
T ss_dssp EEETTSCSCEEEEC---------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTT
T ss_pred EEEcCCCCceEEEEcc-cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCC
Confidence 9999998877776500 000014678999999999999999999999999999999999999888899999999999999
Q ss_pred eEEEEecCCCC-eEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCc
Q psy5792 291 YLFWSESGKIP-LIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNA 369 (377)
Q Consensus 291 ~lywtd~g~~~-~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p 369 (377)
+|||||++..+ +|+|++|||+.+++++.+.+.+|+||++|+.+++|||+|. ..++|++++++|++++++.. ..+.||
T Consensus 445 ~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~-~~~~I~~~~~dG~~r~~~~~-~~~~~P 522 (628)
T 4a0p_A 445 YMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS-DLRRIESSDLSGANRIVLED-SNILQP 522 (628)
T ss_dssp EEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEEC-SSCSCE
T ss_pred eEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeC-CCCEEEEEeCCCCceEEEEc-CCCCCc
Confidence 99999998554 9999999999999999988999999999999999999999 99999999999998887764 567899
Q ss_pred ccc
Q psy5792 370 LLD 372 (377)
Q Consensus 370 ~~~ 372 (377)
|+.
T Consensus 523 ~gl 525 (628)
T 4a0p_A 523 VGL 525 (628)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-62 Score=497.02 Aligned_cols=355 Identities=22% Similarity=0.389 Sum_probs=315.7
Q ss_pred ceeEeeccccCCC------------------CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceE
Q psy5792 2 GYLHVLPYTRNPS------------------FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVV 62 (377)
Q Consensus 2 ~~~~~~~~~~~~~------------------~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~ 62 (377)
|+|||.||..++. +..|.|+++|+.+++|||+|...++|++++++|+ ++++. ...+.+|+
T Consensus 139 g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~-~~~~~~P~ 217 (619)
T 3s94_A 139 GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPF 217 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CC
T ss_pred CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE-eCCCCCce
Confidence 8999999975432 3589999999999999999999999999999999 88776 24688999
Q ss_pred EEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCC-cCCCCCCceeccccCCCc--c
Q psy5792 63 AAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPLSKV--S 137 (377)
Q Consensus 63 ~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~-C~~~~g~Cs~~C~~~~~~--~ 137 (377)
||++++++||||||.+++|.+++ .+|+..+++..... |.+|+++|+.+| +.+.| |..++|+|||+|++.+.. +
T Consensus 218 gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~q--p~~~n~C~~~ng~Cs~lCl~~~~~~~~ 295 (619)
T 3s94_A 218 ALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ--PNATNPCGIDNGGCSHLCLMSPVKPFY 295 (619)
T ss_dssp CEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGS--CCCCCTTTTTGGGCSSEEEECSSTTSE
T ss_pred EEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccC--CCccccccCCCCcccceEECCCCCCCc
Confidence 99999999999999999999999 78988888877766 999999999988 35888 999999999999998853 4
Q ss_pred c---cCCcC------CCcC-CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC
Q psy5792 138 L---AAKVD------FHAG-ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG 207 (377)
Q Consensus 138 ~---~~G~~------~C~~-~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~ 207 (377)
. +.||. +|.. +++||+++.+.. |+++++++... +..++|+.++.++.+++||..+++|||+|...+
T Consensus 296 ~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~--i~~i~l~~~~~--~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 296 QCACPTGVKLLENGKTCKDGATELLLLARRTD--LRRISLDTPDF--TDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp EEECCTTCCBCTTSSCBCSSCSEEEEEEESSC--EEEEESSSTTC--CCEECCCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred eEeCCchheecccCcccCCCCceEEEEEcccc--eEEEecCCCcc--ceeEEeccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 4 88996 8985 678999999888 99999998766 456778888999999999999999999999999
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
+|+|++++|+..+.++. .++..|.||||||.+++|||||...++|++++++|+.+++++..++..|++||+||
T Consensus 372 ~I~r~~~~g~~~~~v~~-------~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp 444 (619)
T 3s94_A 372 AIRRSFIDGSGSQFVVT-------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDP 444 (619)
T ss_dssp EEEEEETTSCSCEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEET
T ss_pred eEEEEEcCCCccEEEEE-------CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEc
Confidence 99999999998888887 78889999999999999999999999999999999999999888899999999999
Q ss_pred CCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCC
Q psy5792 288 ESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIK 367 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~ 367 (377)
.+|+|||||++..++|+|+++||+.+++++...+.+|+|||+|+.+++|||+|. ..++|++++++|+.++++.. ..+.
T Consensus 445 ~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~-~~~~I~~~~~dG~~~~~~~~-~~l~ 522 (619)
T 3s94_A 445 MVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA-KTDKIEVMNTDGTGRRVLVE-DKIP 522 (619)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-TTTEEEEEESSSCCCEEEEE-CCCC
T ss_pred CCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC-CCCEEEEEecCCCceEEEec-cCCC
Confidence 999999999986799999999999999999888999999999999999999999 99999999999998887764 5678
Q ss_pred Ccccc
Q psy5792 368 NALLD 372 (377)
Q Consensus 368 ~p~~~ 372 (377)
|||+.
T Consensus 523 ~P~gl 527 (619)
T 3s94_A 523 HIFGF 527 (619)
T ss_dssp SSCCE
T ss_pred CcEEE
Confidence 89764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=312.01 Aligned_cols=238 Identities=24% Similarity=0.465 Sum_probs=205.9
Q ss_pred C-cCCCCCCceeccccCCCccc---cCCcC------CCc--CCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC
Q psy5792 118 K-YNKNESKVQQVLGPLSKVSL---AAKVD------FHA--GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS 185 (377)
Q Consensus 118 ~-C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~--~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 185 (377)
+ |. ++++|||+|++.++++. +.||. +|+ .++++|+++..+. |+++++++... ...+..+.
T Consensus 2 ~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~--I~~i~~~g~~~-----~~~~~~~~ 73 (349)
T 3v64_C 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID--IRQVLPHRSEY-----TLLLNNLE 73 (349)
T ss_dssp --------CCSSEECCC---CCEECCTTEEECTTSSCEEESSSCCEEEEECBSC--EEEECTTSCCE-----EEEECSCS
T ss_pred cccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCcccccccCceeEeecccc--eEEEeCCCCee-----EEeecCCC
Confidence 5 87 78999999999999998 78997 897 3578999999888 99999988754 23346778
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
+|.++++|+.++.|||+|...++|++++++|+..+.++. .++..|.|||+||.+++|||+|...++|.+++++
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 146 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD 146 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence 899999999999999999999999999999988888776 6788899999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 266 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 266 g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
|..+++++...+..|++||+||.+|+|||+|++..++|+|+++||+.+++++...+.+|+||++|+.+++|||+|. ..+
T Consensus 147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~-~~~ 225 (349)
T 3v64_C 147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA-KHH 225 (349)
T ss_dssp SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET-TTT
T ss_pred CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC-CCC
Confidence 9998888887899999999999999999999974499999999999999988877899999999999999999999 999
Q ss_pred eEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 346 VLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 346 ~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
+|++++++|+++++++ ...+.+|++.
T Consensus 226 ~I~~~~~dG~~~~~~~-~~~~~~P~gi 251 (349)
T 3v64_C 226 VIERANLDGSHRKAVI-SQGLPHPFAI 251 (349)
T ss_dssp EEEEEETTSCSCEEEE-CSSCSSEEEE
T ss_pred EEEEEeCCCCceEEEE-eCCCCCceEE
Confidence 9999999998887775 3457788764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=308.30 Aligned_cols=243 Identities=24% Similarity=0.417 Sum_probs=214.8
Q ss_pred ccCCC-cCCCCCCceeccccCCCccc---cCCcC------CCcC--CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec
Q psy5792 114 IMGIK-YNKNESKVQQVLGPLSKVSL---AAKVD------FHAG--ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181 (377)
Q Consensus 114 ~~~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~~--~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~ 181 (377)
+...+ |. ..++|+|.|.+.+++|. ..||. +|+. ..++|+++.++. |+++++++... + . .+
T Consensus 37 C~dideC~-~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~--I~~i~l~~~~~--~-~--~~ 108 (400)
T 3p5b_L 37 CEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE--VRKMTLDRSEY--T-S--LI 108 (400)
T ss_dssp EEECCCCS-TTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTE--EEEECTTSCSC--E-E--EE
T ss_pred ccCchhhh-ccCCCCCccCCCccceeeeccccccccccccceeeccccceeEEeccce--eEEEccCCcce--e-E--ec
Confidence 34677 87 45799999999999998 78887 8874 568999999987 99999998765 2 2 24
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC----CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG----TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN 257 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G----~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~ 257 (377)
..+..+.++++|+.+++|||+|...++|++++++| +..+.++. ..+..|.||||||.+++|||+|...+
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------CCCCCcccEEEEecCCceEEEECCCC
Confidence 67889999999999999999999999999999998 44667776 67889999999999999999999999
Q ss_pred EEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEE
Q psy5792 258 VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVY 337 (377)
Q Consensus 258 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LY 337 (377)
+|.+++++|..+++++...+..|++|||||.+|+|||+|++..++|++++++|+.+++++...+.+|+|||+|+.+++||
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEE
Confidence 99999999999999998889999999999999999999998668999999999999999988899999999999999999
Q ss_pred EEEeCCCCeEEEEEccCCceEEEEec-CCCCCcccc
Q psy5792 338 WCYSVGSNVLESMDYSGGSKMQLKLS-SNIKNALLD 372 (377)
Q Consensus 338 w~d~~~~~~i~~~~~~G~~~~~~~~~-~~~~~p~~~ 372 (377)
|+|. ..++|++++++|+.++++... ..+++|++.
T Consensus 262 ~aD~-~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl 296 (400)
T 3p5b_L 262 WVDS-KLHSISSIDVNGGNRKTILEDEKRLAHPFSL 296 (400)
T ss_dssp EEET-TTTEEEEEETTSCCCEEEEECSSTTSSEEEE
T ss_pred EEEC-CCCEEEEEeCCCCccEEEEeCCCCCCCCEEE
Confidence 9999 999999999999988888764 357899764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=320.34 Aligned_cols=241 Identities=24% Similarity=0.429 Sum_probs=212.0
Q ss_pred CCC-cCCCCCCceeccccCCCccc---cCCcC------CCcC--CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC
Q psy5792 116 GIK-YNKNESKVQQVLGPLSKVSL---AAKVD------FHAG--ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~~--~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~ 183 (377)
..+ |. ++++|+|.|++.+++|. +.||. +|+. ..++|+++.... |+++++++... ..+ +..
T Consensus 351 dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~--Ir~i~l~~~~~---~~l--~~~ 422 (791)
T 3m0c_C 351 DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE--VRKMTLDRSEY---TSL--IPN 422 (791)
T ss_dssp CCCCCS-SSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSS--EEEECTTSCCC---EEE--ECS
T ss_pred cCcccC-CCCCCCCeeecCCCCceeecCCCCEeCCCCceeeecccccccccccccc--eeEeeccCCcc---eee--ecC
Confidence 566 76 56899999999999998 78886 8874 567999999888 99999988765 222 356
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC----CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT----GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVI 259 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I 259 (377)
+..+.+|++|+.+++|||+|...++|++++++|. ..+.++. ..+..|.||||||.+++|||+|...++|
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-------cCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 7889999999999999999999999999999984 4566666 6888999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 260 EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 260 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
++++++|+.+++++...+..|++|||||.+|+|||||++..++|++++++|+.+++++...+.+|+|||||+.+++|||+
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 575 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE
Confidence 99999999999999888999999999999999999999856899999999999999999889999999999999999999
Q ss_pred EeCCCCeEEEEEccCCceEEEEec-CCCCCcccc
Q psy5792 340 YSVGSNVLESMDYSGGSKMQLKLS-SNIKNALLD 372 (377)
Q Consensus 340 d~~~~~~i~~~~~~G~~~~~~~~~-~~~~~p~~~ 372 (377)
|. ..++|++++++|..+++++.. ..+++||+.
T Consensus 576 D~-~~~~I~~~d~dG~~~~~v~~~~~~l~~P~gl 608 (791)
T 3m0c_C 576 DS-KLHSISSIDVNGGNRKTILEDEKRLAHPFSL 608 (791)
T ss_dssp ET-TTTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred eC-CCCcEEEEecCCCceEEEecCCCccCCCCEE
Confidence 99 999999999999999888764 468899864
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=301.82 Aligned_cols=304 Identities=17% Similarity=0.279 Sum_probs=249.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCC-CCceEEEcCCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDAN-DGNIRSINLDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~-~~~I~~~~~~g~~~ 91 (377)
..|.|+|+|..+++|||+|...++|++++++|+ +++++ ...+..|.+|++. ++.|||||+. ..+|.+++.+|..+
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence 579999999999999999999999999999999 87776 3678899999995 7899999987 68999999999998
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
+++..... |.||++..... .|++++...+.|.++++++.
T Consensus 159 ~~l~~~~~~P~GlalD~~~~----------------------------------------~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKR----------------------------------------RLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEECSCSSEEEEEEETTTT----------------------------------------EEEEEETTTTEEEEEETTSC
T ss_pred EEEECCCCCcceEEEccccC----------------------------------------EEEEEECCCCEEEEEcCCCC
Confidence 87776666 99999844332 59999987778999999987
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEc-CCCCcEEEEeccc----------------------
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR-DGTGRENIIEYVE---------------------- 227 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~-~G~~~~~i~~~~~---------------------- 227 (377)
.. ..+ ...+.+|.|++++ +++|||+|...++|.+++. .|..++++.....
T Consensus 199 ~~---~v~--~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ 271 (628)
T 4a0p_A 199 NR---EVI--ADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASS 271 (628)
T ss_dssp SC---EEE--EECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTT
T ss_pred ce---EEe--eccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccC
Confidence 55 222 3467889999999 6899999999999999985 4443333321000
Q ss_pred -------------c--------------C-------------------------C---------CCCCCCcceEEEeccC
Q psy5792 228 -------------T--------------G-------------------------D---------PTPVDQFTDIAVDWIA 246 (377)
Q Consensus 228 -------------~--------------~-------------------------~---------~~~~~~p~~iavD~~~ 246 (377)
+ . . ..++..+.+|++|+.+
T Consensus 272 ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~ 351 (628)
T 4a0p_A 272 NGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD 351 (628)
T ss_dssp GGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTT
T ss_pred CCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCC
Confidence 0 0 0 0123457789999999
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI 320 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~ 320 (377)
++|||+|...++|.+++++|.....++.. .+..|.|||+|+.++.|||+|.+ ..+|++++++|+.+++++...
T Consensus 352 ~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~-~~~I~v~~~~G~~~~~l~~~~ 430 (628)
T 4a0p_A 352 KQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA-TNVINVTRLDGRSVGVVLKGE 430 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCEEEEEEECT
T ss_pred CeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCC-CCEEEEEECCCCeEEEEEeCC
Confidence 99999999999999999999876555543 57789999999999999999985 789999999999988888877
Q ss_pred CCCceEEEEeCCCCEEEEEEeCCCC--eEEEEEccCCceEEEEecCCCCCcc
Q psy5792 321 IMPIKDITLDRKNKRVYWCYSVGSN--VLESMDYSGGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 321 ~~~P~glalD~~~~~LYw~d~~~~~--~i~~~~~~G~~~~~~~~~~~~~~p~ 370 (377)
+..|.+|++|+.++.|||+|. +.. +|++++++|++++++.. ..+..|-
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~-g~~~~~I~r~~~dG~~~~~l~~-~~l~~P~ 480 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNL-QERSPKIERAALDGTEREVLFF-SGLSKPI 480 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEE-ETTEEEEEEEETTSCSCEEEEC-SSCSCEE
T ss_pred CCceeeEEEecCCCeEEEeec-CCCCCeEEEEeCCCCCcEEEEe-ccCCCcc
Confidence 899999999999999999999 766 89999999998887763 4455553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=297.00 Aligned_cols=241 Identities=24% Similarity=0.464 Sum_probs=203.6
Q ss_pred cCCC-cCCCCCCceeccccCCCccc---cCCcC------CCc--CCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC
Q psy5792 115 MGIK-YNKNESKVQQVLGPLSKVSL---AAKVD------FHA--GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182 (377)
Q Consensus 115 ~~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~--~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~ 182 (377)
...+ |. .+++|+|.|++.++++. +.||. +|+ +++++|+++..+. |+++++++... . ..+.
T Consensus 42 ~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~--I~~i~~~~~~~---~--~~~~ 113 (386)
T 3v65_B 42 QDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID--IRQVLPHRSEY---T--LLLN 113 (386)
T ss_dssp -----------CCTTEEC-----CCEECCTTEEECTTSSCEEECSSCCEEEEECBSC--EEEECTTSCCC---E--EEEC
T ss_pred CccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccccceeEeecCcc--ceeeccCCCcE---E--EEec
Confidence 4667 87 56899999999999988 78886 897 3578999999888 99999988755 2 2345
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
.+..|.++++|+.+++|||+|...++|++++++|+..+.++. .++..|.|||+||.+++|||+|...++|.++
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 186 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-------SSCSCCCCEEEETTTTEEEEEETTTTEEEEC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEE
Confidence 778899999999999999999999999999999988777776 6788899999999999999999999999999
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
+++|..+++++...+..|++||+||.+|+|||+|++..++|+|++++|+.++.++...+.+|+|||+|+.+++|||+|.
T Consensus 187 ~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~- 265 (386)
T 3v65_B 187 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA- 265 (386)
T ss_dssp BTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET-
T ss_pred eCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC-
Confidence 9999998888887889999999999999999999974599999999999999999888999999999999999999999
Q ss_pred CCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 343 GSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 343 ~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
..++|++++++|+.+++++ ...+.+|++.
T Consensus 266 ~~~~I~~~d~dG~~~~~~~-~~~~~~P~gi 294 (386)
T 3v65_B 266 KHHVIERANLDGSHRKAVI-SQGLPHPFAI 294 (386)
T ss_dssp TTTEEEEECTTSCSCEEEE-CSSCSSEEEE
T ss_pred CCCEEEEEeCCCCeeEEEE-ECCCCCceEE
Confidence 9999999999998887775 4557888764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=304.65 Aligned_cols=320 Identities=17% Similarity=0.243 Sum_probs=253.3
Q ss_pred ceeEeeccccCC------------------CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceE
Q psy5792 2 GYLHVLPYTRNP------------------SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVV 62 (377)
Q Consensus 2 ~~~~~~~~~~~~------------------~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~ 62 (377)
|+|||.|+..+. .+..|.|+|+|..+++|||+|...++|.+++++|+ +++++ ...+..|.
T Consensus 52 ~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~-~~~l~~P~ 130 (619)
T 3s94_A 52 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF-WQELDQPR 130 (619)
T ss_dssp TEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCC
T ss_pred CEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE-eCCCCCCc
Confidence 678998885321 13589999999999999999999999999999999 87776 36788999
Q ss_pred EEEE--ECCeEEEEcCC-CCceEEEcCCCCceEEEe-cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCcc
Q psy5792 63 AAVF--YKGRIIYSDAN-DGNIRSINLDGSNSTVLR-NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS 137 (377)
Q Consensus 63 ~lav--~~~~ly~td~~-~~~I~~~~~~g~~~~~~~-~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~ 137 (377)
+|++ .+++|||||+. ..+|.+++.+|...+++. .... |.||++.....
T Consensus 131 ~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~--------------------------- 183 (619)
T 3s94_A 131 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ--------------------------- 183 (619)
T ss_dssp CEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT---------------------------
T ss_pred eEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCC---------------------------
Confidence 9999 46899999987 578999999999877665 3455 99999854432
Q ss_pred ccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-C
Q psy5792 138 LAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-G 216 (377)
Q Consensus 138 ~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G 216 (377)
.|++++...+.|.+++++|... ..+ ....+.+|.||+++ +++|||+|..+++|.+++.. |
T Consensus 184 -------------~LY~aD~~~~~I~~~~~dG~~~---~~~-~~~~~~~P~gi~~~--~~~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 184 -------------KLYWADAKLNFIHKSNLDGTNR---QAV-VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp -------------EEEEEETTTCCEEEESSSCCEE---C----------CCCEEES--SSEEEEECTTTCSEEEEESSSC
T ss_pred -------------EEEEEeCCCCeEEEecCCCCcc---EEE-EeCCCCCceEEEEe--CCEEEEecCCCCEEEEEECCCC
Confidence 5999997777799999998744 122 12356789999998 56999999999999999874 3
Q ss_pred CCcEEEEecc------------ccC-------------------------------------------------------
Q psy5792 217 TGRENIIEYV------------ETG------------------------------------------------------- 229 (377)
Q Consensus 217 ~~~~~i~~~~------------~~~------------------------------------------------------- 229 (377)
...+.+.... ..+
T Consensus 245 ~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~ 324 (619)
T 3s94_A 245 EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR 324 (619)
T ss_dssp CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE
T ss_pred cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc
Confidence 2221111000 000
Q ss_pred -------------------CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC
Q psy5792 230 -------------------DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 230 -------------------~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g 290 (377)
...++..|.+|++|+.+++|||+|...++|.+++++|+..++++..++..|.|||+|+.++
T Consensus 325 ~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 0012456888999998999999999999999999999888888887889999999999999
Q ss_pred eEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC-CeEEEEEccCCceEEEEecCCCCCc
Q psy5792 291 YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS-NVLESMDYSGGSKMQLKLSSNIKNA 369 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~-~~i~~~~~~G~~~~~~~~~~~~~~p 369 (377)
.|||+|.+ ..+|++++++|+.+++++.+.+..|.+|++|+.++.|||+|. +. .+|++++++|++++++. ...+..|
T Consensus 405 ~lY~tD~~-~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~-g~~~~I~r~~~dG~~~~~l~-~~~l~~P 481 (619)
T 3s94_A 405 NLYWTDTG-TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW-GEIPKIERAALDGSDRVVLV-NTSLGWP 481 (619)
T ss_dssp EEEEEETT-TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCSCEEEE-CSSCSCE
T ss_pred cEEEEeCC-CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecC-CCCCEEEEEccCCCccEEEE-eCCCCCC
Confidence 99999986 789999999999999999878999999999999999999998 54 89999999999887765 4455555
Q ss_pred cc
Q psy5792 370 LL 371 (377)
Q Consensus 370 ~~ 371 (377)
-+
T Consensus 482 ~G 483 (619)
T 3s94_A 482 NG 483 (619)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=270.60 Aligned_cols=211 Identities=27% Similarity=0.541 Sum_probs=186.3
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEecc
Q psy5792 148 ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYV 226 (377)
Q Consensus 148 ~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~ 226 (377)
++++|+++.++. |+++++++... +...++.++..+.++++|+.++.|||+|...++|++++++|+.. +.++.
T Consensus 3 ~~p~ll~~~~~~--I~~i~l~~~~~---~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-- 75 (318)
T 3sov_A 3 SAPLLLYANRRD--LRLVDATNGKE---NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-- 75 (318)
T ss_dssp -CCEEEEECEEE--EEEEETTCTTS---CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--
T ss_pred CccEEEEEccCe--EEEEECCCCce---EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--
Confidence 568999999887 99999998753 22344556778999999999999999999999999999998753 44555
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
.++..|.|||+||.+++|||+|...++|.+++++|..+++++...+..|++||+||.+|+|||+|++..++|+|+
T Consensus 76 -----~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 76 -----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp -----ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred -----CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 578889999999999999999999999999999999988888778999999999999999999998767999999
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
+++|+.+++++...+.+|+||++|+.+++|||+|. ..++|++++++|++++++.. ..+.+|++.
T Consensus 151 ~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~-~~~~I~~~d~dG~~~~~~~~-~~~~~P~gl 214 (318)
T 3sov_A 151 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA-KLNFIHKSNLDGTNRQAVVK-GSLPHPFAL 214 (318)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEEC-SCCSCEEEE
T ss_pred EcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC-CCCEEEEEcCCCCceEEEec-CCCCCceEE
Confidence 99999999998877999999999999999999999 99999999999988887763 457888764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-33 Score=263.62 Aligned_cols=248 Identities=19% Similarity=0.308 Sum_probs=209.0
Q ss_pred ccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecC
Q psy5792 21 TLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNN 97 (377)
Q Consensus 21 ~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~ 97 (377)
.+.+. .+.|+++. .+.|++++++|. .+.++ ..+..|.||++ .+++|||+|...++|++++.+|...+.+.
T Consensus 39 ~~~~~-~~~ll~~~--~~~I~~i~~~g~~~~~~~--~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-- 111 (349)
T 3v64_C 39 KALGP-EPVLLFAN--RIDIRQVLPHRSEYTLLL--NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-- 111 (349)
T ss_dssp EESSS-CCEEEEEC--BSCEEEECTTSCCEEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--
T ss_pred ccccc-CceeEeec--ccceEEEeCCCCeeEEee--cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE--
Confidence 34444 56787774 466999999999 87776 77889999999 47899999999999988886654322110
Q ss_pred CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE
Q psy5792 98 AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV 177 (377)
Q Consensus 98 ~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~ 177 (377)
T Consensus 112 -------------------------------------------------------------------------------- 111 (349)
T 3v64_C 112 -------------------------------------------------------------------------------- 111 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE- 256 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~- 256 (377)
..++..|.++++|+.+++|||+|...++|.+++++|+.++.+.. ..+..|.+||+|+.+++|||+|...
T Consensus 112 ---~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-------~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 112 ---STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------TTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred ---eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-------CCCCCcceEEEecCcCeEEEeccCCC
Confidence 11234578899999999999999999999999999998888876 6788999999999999999999988
Q ss_pred CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
++|++++++|+.+++++..++..|.|||+||.+++|||+|++ ..+|++++++|+.+++++...+.+|.||+++ +++|
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~l 258 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSL 258 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEE
Confidence 999999999999888887789999999999999999999986 6899999999999998888778999999995 6899
Q ss_pred EEEEeCCCCeEEEEE-ccCCceEEEEecCCCCCccc
Q psy5792 337 YWCYSVGSNVLESMD-YSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 337 Yw~d~~~~~~i~~~~-~~G~~~~~~~~~~~~~~p~~ 371 (377)
||+|+ ..++|.+++ .+|...+++.. .+.+|++
T Consensus 259 y~td~-~~~~V~~~~~~~G~~~~~i~~--~~~~p~g 291 (349)
T 3v64_C 259 YWTDW-HTKSINSANKFTGKNQEIIRN--KLHFPMD 291 (349)
T ss_dssp EEEET-TTTEEEEEETTTCCSCEEEEC--SCSCCCC
T ss_pred EEecC-CCCeEEEEEccCCCccEEecc--CCCCCce
Confidence 99999 999999999 78877776653 3445543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=256.92 Aligned_cols=209 Identities=27% Similarity=0.507 Sum_probs=181.8
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC----CCcEEEEe
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG----TGRENIIE 224 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G----~~~~~i~~ 224 (377)
+++|+++.++. |+++++++... .. + +..+.+|.++++|+.+++|||+|...++|++++++| +..+.++.
T Consensus 1 ~~~ll~~~~~~--I~~i~~~~~~~--~~-~--~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 1 IAYLFFTNRHE--VRKMTLDRSEY--TS-L--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp CCEEEEECBSS--EEEEETTSCCC--EE-E--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred CCEEEEECCCe--EEEEECCCcce--Ee-h--hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 36899999988 99999998765 22 2 356788999999999999999999999999999997 55566665
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
..+..|.+||+||.+++|||+|...++|.+++++|+.+++++...+..|++||+||.+|+|||+|++..++|+
T Consensus 74 -------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 74 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp -------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred -------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEE
Confidence 5678899999999999999999999999999999999888888778999999999999999999997458999
Q ss_pred EEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEec-CCCCCcccc
Q psy5792 305 RAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS-SNIKNALLD 372 (377)
Q Consensus 305 r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~-~~~~~p~~~ 372 (377)
++++||+.+++++...+.+|+||++|+.+++|||+|. ..++|++++++|++++++... ..+.+|++.
T Consensus 147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~-~~~~I~~~d~dg~~~~~~~~~~~~~~~P~gi 214 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (316)
T ss_dssp EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC-CCCeEEEEecCCCceEEEeecCCccCCcEEE
Confidence 9999999999888777899999999999999999999 999999999999888887653 357788753
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=262.30 Aligned_cols=247 Identities=20% Similarity=0.320 Sum_probs=203.9
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeE
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDF 103 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i 103 (377)
.++|+++. .+.|+++++++. .+.++ ..+..|.||++. +++|||+|..+++|++++.+|.... .
T Consensus 83 ~~~ll~~~--~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--~-------- 148 (400)
T 3p5b_L 83 IAYLFFTN--RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--S-------- 148 (400)
T ss_dssp SCEEEEEE--TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------C--------
T ss_pred cceeEEec--cceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--C--------
Confidence 35776664 578999999999 77777 778999999994 7899999999999998886552200 0
Q ss_pred EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC
Q psy5792 104 ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183 (377)
Q Consensus 104 ~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~ 183 (377)
. .. .+....
T Consensus 149 ------------------------------------------------------~---~~--------------~~~~~~ 157 (400)
T 3p5b_L 149 ------------------------------------------------------S---YD--------------TVISRD 157 (400)
T ss_dssp ------------------------------------------------------C---CE--------------EEECSS
T ss_pred ------------------------------------------------------c---ce--------------EEEeCC
Confidence 0 00 001123
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC-CCEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK-ENVIEVA 262 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~-~~~I~~~ 262 (377)
+..|.++++|+.++.|||+|...++|.+++++|..+++++. ..+..|.+||+|+.+++|||||.. .++|+++
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-------CCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 45689999999999999999999999999999998888887 688899999999999999999976 4899999
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEE
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCY 340 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d 340 (377)
+++|..+++++...+..|.|||+|+.+++|||+|.+ ..+|++++++|+.+++++.. .+.+|.||+++ +++|||+|
T Consensus 231 ~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd 307 (400)
T 3p5b_L 231 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 307 (400)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEE
T ss_pred eCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEec
Confidence 999999989988889999999999999999999985 78999999999999988875 37899999995 68999999
Q ss_pred eCCCCeEEEEE-ccCCceEEEEecCCCCCccc
Q psy5792 341 SVGSNVLESMD-YSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 341 ~~~~~~i~~~~-~~G~~~~~~~~~~~~~~p~~ 371 (377)
+ ..++|.+++ .+|...+++. ..+.+|++
T Consensus 308 ~-~~~~V~~~~~~~G~~~~~i~--~~~~~p~~ 336 (400)
T 3p5b_L 308 I-INEAIFSANRLTGSDVNLLA--ENLLSPED 336 (400)
T ss_dssp S-SSCSEEEEESSSCCCCEEEE--CSCSCEEE
T ss_pred C-CCCeEEEEEcCCCCceEEEe--cCCCCCce
Confidence 9 999999999 6777766664 34445543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=254.09 Aligned_cols=243 Identities=21% Similarity=0.359 Sum_probs=202.0
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc---EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCce-EEEecCCCc
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK---VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNS-TVLRNNAGI 100 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~---~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~p 100 (377)
.++|+++ +...|.+++++|. .+.++ ..+..|.+|++. +++|||+|...++|++++.+|... ..
T Consensus 4 ~p~ll~~--~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------- 72 (318)
T 3sov_A 4 APLLLYA--NRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------- 72 (318)
T ss_dssp CCEEEEE--CEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-------
T ss_pred ccEEEEE--ccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-------
Confidence 4567666 4678999999997 33444 567789999994 789999999999999888655321 00
Q ss_pred eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe
Q psy5792 101 SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180 (377)
Q Consensus 101 ~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~ 180 (377)
+.
T Consensus 73 -------------------------------------------------------------~~----------------- 74 (318)
T 3sov_A 73 -------------------------------------------------------------VV----------------- 74 (318)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------EE-----------------
Confidence 00
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC-CCEE
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK-ENVI 259 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~-~~~I 259 (377)
..++..|.++++|+.++.|||+|...++|.+++++|..++++.. ..+..|.+||+|+..++|||+|.. .++|
T Consensus 75 ~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-------~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 75 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-------QELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp EECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-------CCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 01234578999999999999999999999999999998888886 678899999999999999999975 6899
Q ss_pred EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 260 EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 260 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
++++++|+.+++++..++..|.|||+||.++.|||+|.+ ..+|++++++|+.+++++...+..|.||++| ++.|||+
T Consensus 148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywt 224 (318)
T 3sov_A 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWT 224 (318)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEE
Confidence 999999999888888789999999999999999999985 7999999999999999888668999999997 5799999
Q ss_pred EeCCCCeEEEEEc-cCCceEEEEecCCCCCccc
Q psy5792 340 YSVGSNVLESMDY-SGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 340 d~~~~~~i~~~~~-~G~~~~~~~~~~~~~~p~~ 371 (377)
|. ..++|.+++. +|...+++.. .+.+|++
T Consensus 225 d~-~~~~V~~~~~~~G~~~~~i~~--~~~~P~~ 254 (318)
T 3sov_A 225 DW-STHSILACNKYTGEGLREIHS--DIFSPMD 254 (318)
T ss_dssp ET-TTTEEEEEETTTCCSCEEEEC--CCSSCCC
T ss_pred ec-CCCeEEEEECCCCCceEEEeC--CCCCCcE
Confidence 99 9999999998 5766666643 3445543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=259.89 Aligned_cols=248 Identities=19% Similarity=0.307 Sum_probs=208.5
Q ss_pred ccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecC
Q psy5792 21 TLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNN 97 (377)
Q Consensus 21 ~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~ 97 (377)
.+++. .+.|++++ .+.|++++++|. .+.++ ..+..|.||++. +++|||+|...++|++++.+|...+.+.
T Consensus 82 ~~~~~-~~~l~~~~--~~~I~~i~~~~~~~~~~~--~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-- 154 (386)
T 3v65_B 82 KALGP-EPVLLFAN--RIDIRQVLPHRSEYTLLL--NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-- 154 (386)
T ss_dssp EECSS-CCEEEEEC--BSCEEEECTTSCCCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE--
T ss_pred CCccc-cceeEeec--CccceeeccCCCcEEEEe--cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE--
Confidence 34444 56776664 467999999999 77776 778899999994 7899999999999998886664322211
Q ss_pred CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE
Q psy5792 98 AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV 177 (377)
Q Consensus 98 ~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~ 177 (377)
T Consensus 155 -------------------------------------------------------------------------------- 154 (386)
T 3v65_B 155 -------------------------------------------------------------------------------- 154 (386)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE- 256 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~- 256 (377)
..++..|.++++|+.++.|||+|...++|.+++++|+.++.++. .++..|.+||+|+.+++|||+|...
T Consensus 155 ---~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-------~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 155 ---STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp ---CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-------SSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred ---eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-------CCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 01233577899999999999999999999999999998888887 6788999999999999999999988
Q ss_pred CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
++|++++++|+.+++++..++..|.|||+||.+++|||+|.+ ..+|++++++|+.+++++...+.+|.||+++ +++|
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~l 301 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSL 301 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT-TTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEE
Confidence 999999999999988888789999999999999999999986 7899999999999998888778999999995 6899
Q ss_pred EEEEeCCCCeEEEEE-ccCCceEEEEecCCCCCccc
Q psy5792 337 YWCYSVGSNVLESMD-YSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 337 Yw~d~~~~~~i~~~~-~~G~~~~~~~~~~~~~~p~~ 371 (377)
||+|+ ..++|.+++ .+|...+++.. .+.+|++
T Consensus 302 y~td~-~~~~V~~~~~~~G~~~~~i~~--~~~~p~g 334 (386)
T 3v65_B 302 YWTDW-HTKSINSANKFTGKNQEIIRN--KLHFPMD 334 (386)
T ss_dssp EEEET-TTTEEEEEETTTCCSCEEEEC--SCSCCCC
T ss_pred EEeeC-CCCeEEEEECCCCcceEEEcc--CCCCCce
Confidence 99999 999999999 68777776653 3444543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=278.13 Aligned_cols=246 Identities=20% Similarity=0.322 Sum_probs=202.7
Q ss_pred CeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEE
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFI 104 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~ 104 (377)
..|+++ +...|+++++++. ...++ ..+..|.||++. +++|||+|..+++|++++.+|.....
T Consensus 396 p~Ll~a--n~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~----------- 460 (791)
T 3m0c_C 396 AYLFFT--NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS----------- 460 (791)
T ss_dssp CEEEEE--CBSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred cccccc--cccceeEeeccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-----------
Confidence 466555 5577999999999 77777 778999999994 78999999999999988865522100
Q ss_pred eeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCC
Q psy5792 105 LFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKV 184 (377)
Q Consensus 105 v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 184 (377)
. . ..+....+
T Consensus 461 -----------------------------------------------------~---~--------------~~vi~~~l 470 (791)
T 3m0c_C 461 -----------------------------------------------------S---Y--------------DTVISRDI 470 (791)
T ss_dssp ---------------------------------------------------------C--------------EEEECSSC
T ss_pred -----------------------------------------------------c---e--------------eEEEecCC
Confidence 0 0 00011244
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-CEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-NVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-~~I~~~~ 263 (377)
..|.||++|+.+++|||+|...++|.+++++|+.+++++. ..+..|.+|||||.+++|||||... ++|++++
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 5689999999999999999999999999999999888887 7888999999999999999999876 8999999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEEe
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d~ 341 (377)
++|..+++++...+..|.|||||+.+++|||+|++ ..+|++++++|+.+++++.. .+.+|.||+++ +++|||+|+
T Consensus 544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~ 620 (791)
T 3m0c_C 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI 620 (791)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET
T ss_pred cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEEC
Confidence 99999999998889999999999999999999986 78999999999999998875 36788888884 679999999
Q ss_pred CCCCeEEEEE-ccCCceEEEEecCCCCCccc
Q psy5792 342 VGSNVLESMD-YSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 342 ~~~~~i~~~~-~~G~~~~~~~~~~~~~~p~~ 371 (377)
..++|++++ ++|.+++++. ..+.+|++
T Consensus 621 -~~~~I~~~dk~tG~~~~~l~--~~l~~P~~ 648 (791)
T 3m0c_C 621 -INEAIFSANRLTGSDVNLLA--ENLLSPED 648 (791)
T ss_dssp -TTTEEEEEETTTCCCCEEEE--CSCSCCCC
T ss_pred -CCCEEEEEeCCCCcceEEee--cCCCCcee
Confidence 999999998 5666666664 34555654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=246.55 Aligned_cols=246 Identities=20% Similarity=0.319 Sum_probs=200.0
Q ss_pred CeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEE
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFI 104 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~ 104 (377)
+.|+++ ..+.|.++++++. ...++ ..+..|.|+++. +++|||+|...++|++++.+|... ..
T Consensus 2 ~~ll~~--~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~---~~-------- 66 (316)
T 1ijq_A 2 AYLFFT--NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VS-------- 66 (316)
T ss_dssp CEEEEE--CBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred CEEEEE--CCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC---Cc--------
Confidence 467666 4567999999999 76676 778999999994 679999999999999888654210 00
Q ss_pred eeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCC
Q psy5792 105 LFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKV 184 (377)
Q Consensus 105 v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 184 (377)
. .. .+. ...+
T Consensus 67 ------------------------------------------------------~--~~-------------~~~-~~~~ 76 (316)
T 1ijq_A 67 ------------------------------------------------------S--YD-------------TVI-SRDI 76 (316)
T ss_dssp ---------------------------------------------------------CE-------------EEE-CSSC
T ss_pred ------------------------------------------------------c--cE-------------EEE-eCCC
Confidence 0 00 000 0123
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-CEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-NVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-~~I~~~~ 263 (377)
..|.++++|+.++.|||+|...++|.+++++|..+++++. ..+..|.+||+|+.+++|||+|... ++|++++
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 4688999999899999999999999999999988777776 6788999999999999999999876 8999999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEEe
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d~ 341 (377)
++|+.+++++...+..|.|||+|+.+++|||+|.+ ..+|++++++|+.+++++.. .+.+|.||++| +++|||+|.
T Consensus 150 ~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~ 226 (316)
T 1ijq_A 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI 226 (316)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET
T ss_pred CCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEEC
Confidence 99999888887778999999999999999999985 78999999999999988774 37899999997 589999999
Q ss_pred CCCCeEEEEEc-cCCceEEEEecCCCCCccc
Q psy5792 342 VGSNVLESMDY-SGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 342 ~~~~~i~~~~~-~G~~~~~~~~~~~~~~p~~ 371 (377)
..++|.+++. +|...+++.. .+.+|++
T Consensus 227 -~~~~V~~~~~~~g~~~~~i~~--~~~~p~~ 254 (316)
T 1ijq_A 227 -INEAIFSANRLTGSDVNLLAE--NLLSPED 254 (316)
T ss_dssp -TTTEEEEEETTTCCCCEEEEC--SCSCCCC
T ss_pred -CCCeEEEEeCCCCcceEEEec--CCCCceE
Confidence 9999999996 6766666643 3455544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=291.95 Aligned_cols=241 Identities=24% Similarity=0.420 Sum_probs=205.2
Q ss_pred CCC-cCCCCCCceeccccCCCccc---cCCcC------CCcC--CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC
Q psy5792 116 GIK-YNKNESKVQQVLGPLSKVSL---AAKVD------FHAG--ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~~--~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~ 183 (377)
..+ |. .+++|+|.|++.+++|. +.||. +|+. ..++|++++.+. |+++++++... ...+..
T Consensus 333 dideC~-~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~--I~~id~~~~~~-----~~~~~~ 404 (699)
T 1n7d_A 333 DIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE--VRKMTLDRSEY-----TSLIPN 404 (699)
T ss_dssp CCCCCS-SSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC---CEECTTSCCE-----ECCSCC
T ss_pred CccccC-CCCccccccccCCCCeeeeeecccccCCCCCcccccccceeEEecCccc--eEEEeCCCCcc-----eeeecc
Confidence 556 65 35789999999999998 88987 8874 567899998887 99999987644 223456
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC----CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG----TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVI 259 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G----~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I 259 (377)
+.+|.++++|+.+++|||+|...++|++++++| +..+.++. ..+..|.+|||||.+++|||+|...++|
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-------~~~~~P~glavD~~~g~LY~tD~~~~~I 477 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV 477 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-------SCC--CCCEECCCSSSBCEECCTTTSCE
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-------CCCCCcceEEEEeeCCcEEEEeccCCeE
Confidence 778999999999999999999999999999997 44444444 4677899999999999999999999999
Q ss_pred EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 260 EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 260 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
.+++++|..+++++...+..|++|||||.+|+|||+|++..++|++++++|+.+++++...+.+|+|||+|+.+++|||+
T Consensus 478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence 99999999988888877899999999999999999998755899999999999988887778999999999999999999
Q ss_pred EeCCCCeEEEEEccCCceEEEEec-CCCCCcccc
Q psy5792 340 YSVGSNVLESMDYSGGSKMQLKLS-SNIKNALLD 372 (377)
Q Consensus 340 d~~~~~~i~~~~~~G~~~~~~~~~-~~~~~p~~~ 372 (377)
|. ..++|++++++|+++++++.. ..+++|++.
T Consensus 558 D~-~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gl 590 (699)
T 1n7d_A 558 DS-KLHSISSIDVNGGNRKTILEDEKRLAHPFSL 590 (699)
T ss_dssp ET-TTTEEEEECSSSSCCEEECCCSSSCSSCCCC
T ss_pred ec-CCCeEEEEccCCCceEEEEecCCcCCCceEe
Confidence 99 999999999999888877653 457788764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=217.49 Aligned_cols=245 Identities=18% Similarity=0.255 Sum_probs=194.8
Q ss_pred CeEEEEeCCCCcEEEEEcCCc-EE-----EEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCC
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK-VA-----KVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAG 99 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~-~~-----~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~ 99 (377)
++|||++. +.|++++++|+ .+ .++. ....+|.++++. +++|||+|...++|.+++.+|.....+.
T Consensus 2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---- 74 (267)
T 1npe_A 2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---- 74 (267)
T ss_dssp EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE----
T ss_pred cEEEEEcC--CeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE----
Confidence 57899875 58999999998 53 2331 234689999994 6799999999888888886553321110
Q ss_pred ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEE
Q psy5792 100 ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLG 179 (377)
Q Consensus 100 p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~ 179 (377)
T Consensus 75 -------------------------------------------------------------------------------- 74 (267)
T 1npe_A 75 -------------------------------------------------------------------------------- 74 (267)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CC
Q psy5792 180 PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--EN 257 (377)
Q Consensus 180 ~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~ 257 (377)
...+..|.++++|+.+++|||+|...++|.+++++|...+.+.. .++..|.+|++|+.+++|||++.. .+
T Consensus 75 -~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-------~~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 75 -RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-------TGLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp -CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred -ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-------CCCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 01234688999999889999999999999999999987777765 567789999999888999999987 67
Q ss_pred EEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEE
Q psy5792 258 VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVY 337 (377)
Q Consensus 258 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LY 337 (377)
+|++++++|...+++....+..|.+|++|+.+++|||+|.+ ..+|.+++++|..++.+... +..|.||++| +++||
T Consensus 147 ~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~ly 222 (267)
T 1npe_A 147 KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLY 222 (267)
T ss_dssp EEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEE
T ss_pred EEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC-CCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEE
Confidence 99999999988877776678899999999989999999986 68999999999877777664 7899999997 58999
Q ss_pred EEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 338 WCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 338 w~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
|++. ..++|.+++.+++.....+.....+.|++.
T Consensus 223 va~~-~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi 256 (267)
T 1npe_A 223 YTDW-KTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (267)
T ss_dssp EEET-TTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred EEEC-CCCeEEEEeCCCCCceEEEcccccccccee
Confidence 9999 999999999985543333322233456543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=254.55 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=194.6
Q ss_pred CeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEE
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFI 104 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~ 104 (377)
..|+++ +.+.|.++++++. .+.++ ..+..|.||++. +++|||+|...++|++++.+|.... .
T Consensus 378 ~~ll~~--~~~~I~~id~~~~~~~~~~--~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~---~-------- 442 (699)
T 1n7d_A 378 AYLFFT--NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---S-------- 442 (699)
T ss_dssp CCBCCC--CTTC-CEECTTSCCEECCS--CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC----C--------
T ss_pred eeEEec--CccceEEEeCCCCcceeee--ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC---c--------
Confidence 455444 5678999999999 77665 678899999994 7899999999999999886552100 0
Q ss_pred eeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCC
Q psy5792 105 LFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKV 184 (377)
Q Consensus 105 v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 184 (377)
. . ..+....+
T Consensus 443 ------~--------------------------------------------------~--------------~~~i~~~~ 452 (699)
T 1n7d_A 443 ------S--------------------------------------------------Y--------------DTVISRDI 452 (699)
T ss_dssp ------C--------------------------------------------------C--------------CCBCCSCC
T ss_pred ------c--------------------------------------------------e--------------EEEEeCCC
Confidence 0 0 00000123
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-CEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-NVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-~~I~~~~ 263 (377)
..|.+|++|+.+++|||+|...++|.+++++|..+++++. ..+..|.+||||+..++|||+|... ++|++++
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 4578899999899999999999999999999988777776 6778899999999999999999875 8999999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEEe
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d~ 341 (377)
++|+.+++++...+..|+|||+||.+++|||+|.+ ..+|++++++|+.+++++.. .+.+|.||++|. ++|||+|+
T Consensus 526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~ 602 (699)
T 1n7d_A 526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI 602 (699)
T ss_dssp SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEECS
T ss_pred CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEEeC
Confidence 99998888887778999999999999999999985 78999999999999888763 378899999974 69999999
Q ss_pred CCCCeEEEEEcc-CCceEEEEecCCCCCccc
Q psy5792 342 VGSNVLESMDYS-GGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 342 ~~~~~i~~~~~~-G~~~~~~~~~~~~~~p~~ 371 (377)
..++|.+++.. |...+++ ...+.+|++
T Consensus 603 -~~~~V~~~d~~~G~~~~~i--~~~~~~P~~ 630 (699)
T 1n7d_A 603 -INEAIFSANRLTGSDVNLL--AENLLSPED 630 (699)
T ss_dssp -TTTCEEEEETTTEEEEECC--CTTCSSCCC
T ss_pred -CCCeEEEEEccCCCceEEe--ecCCCCCcE
Confidence 99999999975 4433333 233445543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-26 Score=208.24 Aligned_cols=209 Identities=24% Similarity=0.472 Sum_probs=174.3
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceee--EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVT--QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
++|++++.+. |+++++++...+.. ..++. ....+|.++++|+.+++|||+|...++|++++++|...+.++.
T Consensus 2 ~~l~~~~~~~--I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--- 75 (267)
T 1npe_A 2 THLLFAQTGK--IERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--- 75 (267)
T ss_dssp EEEEEEEEEE--EEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---
T ss_pred cEEEEEcCCe--EEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE---
Confidence 4789988765 99999998753100 11221 1235789999999899999999999999999999987777665
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEE
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARA 306 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~ 306 (377)
.++..|.+|++|+.+++|||+|...++|.+++++|...+++...++..|++|++||.+++|||+|++. .++|+++
T Consensus 76 ----~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 76 ----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp ----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ----CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 56788999999998999999999999999999999887777776678999999999899999999863 5799999
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCccc
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~ 371 (377)
.++|+..+++....+..|+||++|+.+++|||+|. ..++|.+++++|..++++.. ...+|++
T Consensus 152 ~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~-~~~~I~~~~~~g~~~~~~~~--~~~~P~g 213 (267)
T 1npe_A 152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-GTHRAECLNPAQPGRRKVLE--GLQYPFA 213 (267)
T ss_dssp ETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTEEEEEEEEE--CCCSEEE
T ss_pred ecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC-CCCEEEEEecCCCceEEEec--CCCCceE
Confidence 99999888887666889999999988899999999 99999999999876665543 3456654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-24 Score=197.29 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=204.4
Q ss_pred CCCCcCCccccccCCCCeEEEEeCC-CCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCC-----------
Q psy5792 12 NPSFGAVASTLKPQSGPFVYGVKTL-SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDAND----------- 78 (377)
Q Consensus 12 ~~~~~~~~~~~~d~~~~~ly~~d~~-~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~----------- 78 (377)
|.+.+-..+-.+-.+++.||+.... .++|++++.||+ .+.|. -..+.-|.+.+++||+++...
T Consensus 10 n~~~Ni~n~g~~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~----~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~ 85 (302)
T 3s25_A 10 NTAGNLYNAGLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLS----NDTAMYINADKNYVYYVRNNNQKITSQTFFSY 85 (302)
T ss_dssp SCTTTGGGTTCEEEETTEEEEEEGGGTTEEEEEETTSCSCEEEE----EEEEEEEEECSSEEEEEEECC------CCSSC
T ss_pred ccccceecceEEEEeCCEEEEEeCCCCceEEEEcCCCCCCEEcc----CCceeeEEEcCCEEEEEECCCCcccccceecc
Confidence 3344445555556678999999864 688999999999 88885 224677888999999997653
Q ss_pred --CceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe
Q psy5792 79 --GNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156 (377)
Q Consensus 79 --~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~ 156 (377)
+.|++++.+|...+.+...... .+ .+. ...|++++
T Consensus 86 n~~~Iy~i~~dg~~~~~l~~~~~~-~~---s~~---------------------------------------g~~Iy~~~ 122 (302)
T 3s25_A 86 DRNSLCRIKRNGHGSTVLDPDPCI-YA---SLI---------------------------------------GNYIYYLH 122 (302)
T ss_dssp CSEEEEEEETTSCCCEEEECSCEE-EE---EEE---------------------------------------TTEEEEEE
T ss_pred CCCeEEEEeCCCCcceEeecCCcc-EE---EEe---------------------------------------CCEEEEEe
Confidence 5799999888887766543221 11 111 13688877
Q ss_pred ---CCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCC
Q psy5792 157 ---NSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTP 233 (377)
Q Consensus 157 ---~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~ 233 (377)
.....|.++++++... +.+.. ... .++++.++.|||++.....|++++++|+.++.+.. .
T Consensus 123 ~~~~~~~~Iy~~~~dGs~~---~~lt~-~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-------~- 185 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGEEK---KKIKN-HYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-------C- 185 (302)
T ss_dssp ESSSSCEEEEEEETTSCCC---EEEES-SCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-------S-
T ss_pred ecCCCCceEEEEECCCCCe---EEEeC-CCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-------C-
Confidence 3445699999999866 23322 111 34566799999999877899999999988777754 2
Q ss_pred CCCcceEEEeccCCeEEEEcCCC-CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKE-NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~-~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
+..++++|.++.|||++... .+|++++++|..+++|.+..+ | .++|.+++|||++.+....|+++++||++
T Consensus 186 ---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 ---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 33456667899999998764 599999999999888876543 3 37778999999865446899999999999
Q ss_pred eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 313 QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 313 ~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
++.|.... ..+|++ .+++|||+|. ..+.|.+++++|+++.+++
T Consensus 258 r~~l~~~~---~~~i~i--~~d~Iy~td~-~~~~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 258 FKELAKGE---FCNINV--TSQYVYFTDF-VSNKEYCTSTQNPDTIKAL 300 (302)
T ss_dssp CEEEEESC---EEEEEE--CSSEEEEEET-TTCCEEEEESSSCCSCEEC
T ss_pred cEEeeCCc---cceEEE--eCCEEEEEEC-CCCeEEEEECCCCCceEec
Confidence 99988752 334554 8999999999 8889999999999887774
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=201.29 Aligned_cols=244 Identities=13% Similarity=0.147 Sum_probs=183.8
Q ss_pred CCcCCccccccC-CCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceE----EEc
Q psy5792 14 SFGAVASTLKPQ-SGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIR----SIN 85 (377)
Q Consensus 14 ~~~~~~~~~~d~-~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~----~~~ 85 (377)
.|..|.++++|+ ..++||++|.. ++|.++++++. ++++. .....|.+|++ .+++||++|...+.+. .++
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 478999999998 57899999998 99999999998 77776 67889999999 3456999998654321 121
Q ss_pred CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 86 LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 86 ~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
.+|... . ..
T Consensus 212 ~~g~~~-------------------------------------------------------------------~--~~-- 220 (430)
T 3tc9_A 212 RESGFK-------------------------------------------------------------------V--IT-- 220 (430)
T ss_dssp GGGTSC-------------------------------------------------------------------S--EE--
T ss_pred CCCcee-------------------------------------------------------------------e--ee--
Confidence 111000 0 00
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
. +..+..|.++++|+.+++|||+|...++|+++++++.....+... .....|.+||+|+.
T Consensus 221 -----------~---l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~------~~~~~P~gia~~pd 280 (430)
T 3tc9_A 221 -----------E---LTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI------QDSGWEFHIQFHPS 280 (430)
T ss_dssp -----------E---EEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC------SSSSCCEEEEECTT
T ss_pred -----------e---eccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc------CCCCcceeEEEcCC
Confidence 0 012346888999998899999999999999999997654344430 23457999999987
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCe-----EEEEeeC--------------CCCCce-eEEEcC-------CCCeEEEEecC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQY-----RYVLISG--------------GVDQPS-ALAVDP-------ESGYLFWSESG 298 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~-----~~~l~~~--------------~~~~P~-~iavdp-------~~g~lywtd~g 298 (377)
++.|||+|...++|.++++++.. ..++... .+..|. ++++++ ..|.|||+|++
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~ 360 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE 360 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG
T ss_pred CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC
Confidence 66799999999999999998741 2233321 267899 899963 36899999996
Q ss_pred CCCeEEEEecCCCCeEEEEe---------c-------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 299 KIPLIARAGLDGKKQTILAQ---------E-------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 299 ~~~~I~r~~ldG~~~~~l~~---------~-------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+++|.+++.+|.-.+..-. . .|.+|.||++|+.++.||++|. .+++|.+++++
T Consensus 361 -n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~-~n~rIr~i~~e 429 (430)
T 3tc9_A 361 -NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR-ENRRIRKIGYE 429 (430)
T ss_dssp -GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG-GGTEEEEEEEC
T ss_pred -CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC-CCCeEEEEccC
Confidence 7999999988743333322 0 1668999999987899999999 99999999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-22 Score=195.49 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=179.1
Q ss_pred CCcCCccccccCC--CCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCC
Q psy5792 14 SFGAVASTLKPQS--GPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGS 89 (377)
Q Consensus 14 ~~~~~~~~~~d~~--~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~ 89 (377)
.|..|.++++|++ .++|||+|.. ++|+++++++. .+++. ..+..|.+|++ .++.||++|..++...
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~lyVad~~~~~~~------- 206 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGDMVVVDDQSSDTN------- 206 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCCEEEEECCSCTTS-------
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee--cCCCCccEEEECCCCCEEEEcCCCCccc-------
Confidence 5788999999984 7899999998 99999999666 76675 67889999999 5556999997542110
Q ss_pred ceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 90 NSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 90 ~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
.++..+.+... + ..
T Consensus 207 -----------~gv~~~~~~~~---------------------------------------~----------~~------ 220 (433)
T 4hw6_A 207 -----------TGIYLFTRASG---------------------------------------F----------TE------ 220 (433)
T ss_dssp -----------EEEEEECGGGT---------------------------------------T----------CC------
T ss_pred -----------ceEEEEECCCC---------------------------------------e----------ec------
Confidence 00000011000 0 00
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
... +..+..|.++++|+.++.|||+|...++|++++++ |...+.+... .....+.+||+|+.++.
T Consensus 221 ------~~~--~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~------~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 221 ------RLS--LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM------DTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp ------EEE--EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC------SCCSSCEEEEECTTSSE
T ss_pred ------ccc--ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc------CCCCCcccEEEeCCCCE
Confidence 000 11245688899999889999999999999999998 4332344431 22344678999987777
Q ss_pred EEEEcCCCCEEEEEEcCCCe-----EEEEeeC--------------CCCCceeEEE---------cCCCCeEEEEecCCC
Q psy5792 249 IYWSDPKENVIEVARLTGQY-----RYVLISG--------------GVDQPSALAV---------DPESGYLFWSESGKI 300 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~-----~~~l~~~--------------~~~~P~~iav---------dp~~g~lywtd~g~~ 300 (377)
||++|..+++|.++++++.. ..++... .+..|.+|++ | ..|.||++|++ +
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~-n 364 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRD-S 364 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETT-T
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECC-C
Confidence 99999999999999988531 1233321 2678999999 6 58999999986 7
Q ss_pred CeEEEEecCCCCeEEEEec-----------------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 301 PLIARAGLDGKKQTILAQE-----------------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 301 ~~I~r~~ldG~~~~~l~~~-----------------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
++|.+++.+|.- .++... .|.+|.||++|+.++.||++|. .+++|.+++++
T Consensus 365 ~~I~~~~~~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~-~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTPEGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC-DNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECTTSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG-GGTEEEEEEEC
T ss_pred CEEEEECCCCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC-CCCEEEEEecC
Confidence 999999988843 333321 2678999999988999999999 99999999865
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-21 Score=186.89 Aligned_cols=246 Identities=12% Similarity=0.113 Sum_probs=179.0
Q ss_pred CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCC-ceEEEcCCCC
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDG-NIRSINLDGS 89 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~-~I~~~~~~g~ 89 (377)
.|..|.++++|+. ++|||+|...+.|+++++++. .+++. .....|. +++ .++.|||+|...+ .|++++.++.
T Consensus 129 ~~~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~--~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 129 KFKYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVH--PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEE--ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred ccCCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEee--ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 4789999999964 679999999999999999988 77775 3455677 888 5668999998654 7777773321
Q ss_pred c-eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 N-STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~-~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
. ...+. .+
T Consensus 205 ~~~~~~g----------------------------------------------------------------------~~- 213 (409)
T 3hrp_A 205 WAPTRIG----------------------------------------------------------------------QL- 213 (409)
T ss_dssp TCEEEEE----------------------------------------------------------------------EC-
T ss_pred ceeEEee----------------------------------------------------------------------ec-
Confidence 1 11110 00
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc-eEEEeccCC
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT-DIAVDWIAQ 247 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~-~iavD~~~~ 247 (377)
.......|.++++|+.++.||+++. .++|+++++++.....+.. ..... .....|. +|++|+..+
T Consensus 214 -----------~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~-~~~~g-~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 214 -----------GSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQ-LELSG-SLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp -----------CTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEE-CCCCS-CCCCSSCCEEEEETTTT
T ss_pred -----------cchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEec-ccccC-CCCCCccccEEEeCCCC
Confidence 0012235677888888899999875 6799999998765443321 00000 1112366 999998789
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeCC--------------CCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCC
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISGG--------------VDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKK 312 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~~--------------~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~ 312 (377)
+||++|...++|.+++++|... ++.... +..|.+|++|| .|.||++|. + +.+|.+.++....
T Consensus 280 ~lyv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~-~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFK-GYCLRKLDILDGY 356 (409)
T ss_dssp EEEEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTT-TCEEEEEETTTTE
T ss_pred EEEEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCC-CCEEEEEECCCCE
Confidence 9999999999999999999843 343322 67899999998 577999998 6 7999999944333
Q ss_pred eEEEEec--------------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 313 QTILAQE--------------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 313 ~~~l~~~--------------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..++... .+..|.||++|.. +.||++|. ..++|.++.++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~-~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEA-WGKAIRKYAVE 409 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEES-TTCEEEEEEEC
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEEC-CCCeEEEEEeC
Confidence 4444432 2678999999975 99999999 99999998763
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-22 Score=183.28 Aligned_cols=226 Identities=16% Similarity=0.272 Sum_probs=169.9
Q ss_pred EEEECCeEEEEcCC-CCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCc
Q psy5792 64 AVFYKGRIIYSDAN-DGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKV 142 (377)
Q Consensus 64 lav~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~ 142 (377)
++..+++||+++.. ...|++++.+|..++.+.... +..|.+ +
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~-~~~i~~---~--------------------------------- 63 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT-AMYINA---D--------------------------------- 63 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE-EEEEEE---C---------------------------------
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc-eeeEEE---c---------------------------------
Confidence 34599999999754 578999999998877765421 222221 1
Q ss_pred CCCcCCCcEEEEEeCC-------------CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEE---cCC
Q psy5792 143 DFHAGISDFILFSVNS-------------GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVD---IDH 206 (377)
Q Consensus 143 ~~C~~~~~~l~~s~~~-------------~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd---~~~ 206 (377)
...|+++..+ .+.|+++++++... ..+. .... ..++. .+++|||++ ...
T Consensus 64 ------g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~---~~l~--~~~~--~~~s~--~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 64 ------KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS---TVLD--PDPC--IYASL--IGNYIYYLHYDTQTA 128 (302)
T ss_dssp ------SSEEEEEEECC------CCSSCCSEEEEEEETTSCCC---EEEE--CSCE--EEEEE--ETTEEEEEEESSSSC
T ss_pred ------CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc---eEee--cCCc--cEEEE--eCCEEEEEeecCCCC
Confidence 1245555422 34699999999866 2222 1111 23333 499999999 466
Q ss_pred CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc
Q psy5792 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 207 ~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 286 (377)
..|++++++|+.++.+.. ... +++||.+++|||++....+|++++++|..++.|... +..++++
T Consensus 129 ~~Iy~~~~dGs~~~~lt~-------~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~ 192 (302)
T 3s25_A 129 TSLYRIRIDGEEKKKIKN-------HYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVV 192 (302)
T ss_dssp EEEEEEETTSCCCEEEES-------SCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEE
T ss_pred ceEEEEECCCCCeEEEeC-------CCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Cccceee
Confidence 799999999999888876 322 467899999999999888999999999998877653 4455677
Q ss_pred CCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE-EeCCCCeEEEEEccCCceEEEEec
Q psy5792 287 PESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC-YSVGSNVLESMDYSGGSKMQLKLS 363 (377)
Q Consensus 287 p~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~-d~~~~~~i~~~~~~G~~~~~~~~~ 363 (377)
|..++|||++++...+|+|+++||+++++|..+.+ | .+|+.+++|||+ +. ....|++++++|++++++..+
T Consensus 193 P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r~~l~~~ 264 (302)
T 3s25_A 193 LDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGG-DNPALCVVKNDGTGFKELAKG 264 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECS-SSCEEEEEETTSCCCEEEEES
T ss_pred ecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECC-CCcEEEEEECCCCccEEeeCC
Confidence 89999999998756899999999999998876543 3 366678999998 55 678999999999998888754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=184.92 Aligned_cols=252 Identities=11% Similarity=0.164 Sum_probs=185.5
Q ss_pred CCcCCccccccCC-CCeEEEEeCCCCcEEEEEcCCc-EEEEEeCC--CCCceEEEEE---------ECCeEEEEcCCCCc
Q psy5792 14 SFGAVASTLKPQS-GPFVYGVKTLSHSLHYVNIEVK-VAKVVSMP--DAAQVVAAVF---------YKGRIIYSDANDGN 80 (377)
Q Consensus 14 ~~~~~~~~~~d~~-~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~--~~~~p~~lav---------~~~~ly~td~~~~~ 80 (377)
.|..|.+|++|+. .++||+++...+.|+++|+++. ++++.... .+..|.+|++ .+++||++|+..++
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4678999999984 7899999998899999999998 88876322 3457999999 45579999987643
Q ss_pred ------eEEEcC--CCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEE
Q psy5792 81 ------IRSINL--DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFI 152 (377)
Q Consensus 81 ------I~~~~~--~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l 152 (377)
|..++. +|+..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~------------------------------------------------------------- 235 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFD------------------------------------------------------------- 235 (496)
T ss_dssp GGGEEEEEEEECCTTSCCS-------------------------------------------------------------
T ss_pred cccCceEEEEecCCCCcee-------------------------------------------------------------
Confidence 333320 01000
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-------CCCc------
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-------GTGR------ 219 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-------G~~~------ 219 (377)
.+.. .. .++ ...+|.++++|+.++.||++|...++|++++++ +...
T Consensus 236 ---~~~~--~~--------------~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 236 ---DRSD--IQ--------------LIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp ---TTSC--EE--------------EEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred ---eccc--ce--------------eec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 0000 00 011 234678889999899999999999999999997 3221
Q ss_pred ------EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE-----EEEeeC-------------
Q psy5792 220 ------ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR-----YVLISG------------- 275 (377)
Q Consensus 220 ------~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~-----~~l~~~------------- 275 (377)
+.+... .....|.+||+|+.++.||++|..+++|+++++++... .++...
T Consensus 295 ~~~g~~~~l~~~------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~ 368 (496)
T 3kya_A 295 NNPNTFKQLFTI------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368 (496)
T ss_dssp GCTTTEEEEEEC------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred ccccccceeEec------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccc
Confidence 233330 23456999999987767999999999999999988531 233321
Q ss_pred -CCCCce-eEEEcC------CCCeEEEEecCCCCeEEEEecCCCCeEEEEec-----------------------CCCCc
Q psy5792 276 -GVDQPS-ALAVDP------ESGYLFWSESGKIPLIARAGLDGKKQTILAQE-----------------------IIMPI 324 (377)
Q Consensus 276 -~~~~P~-~iavdp------~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-----------------------~~~~P 324 (377)
.+..|. ++++|. ..|.||++|++ +++|++++.+|. .+++... .|.+|
T Consensus 369 a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 369 ARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-NFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp CBCSSEEEEEEEECTTCCSSCCEEEEEEEGG-GTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred cccCCCeEEEEEccccccccCCCeEEEEECC-CCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 257899 889973 57999999996 899999998884 4444421 26789
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.||++|..++.||++|. .+++|++++++|..
T Consensus 447 ~gIavd~~~g~lyVaD~-~N~rIrki~~~~~~ 477 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQ-VGHTIRTISMEQEE 477 (496)
T ss_dssp EEEEEETTTTEEEEEET-TTTEEEEEEECCCC
T ss_pred cEEEEECCCCEEEEEeC-CCCEEEEEECCCCc
Confidence 99999977799999999 99999999999753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-18 Score=160.17 Aligned_cols=277 Identities=14% Similarity=0.139 Sum_probs=202.6
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTV 93 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~ 93 (377)
+..|.++++|.+ ++||+++...+.|.+++.+|....+........|.+|++ .++.||+++...+.|.+++.+|+....
T Consensus 19 ~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~ 97 (300)
T 2qc5_A 19 DSGPYGITSSED-GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEY 97 (300)
T ss_dssp TCCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCCcceeeECCC-CCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence 679999999986 689999998999999999966333432234578999999 567899999888999999966665433
Q ss_pred Eec-CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 94 LRN-NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 94 ~~~-~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
... ... |.++++. ++ ..++++....+.|.+++.++.
T Consensus 98 ~~~~~~~~~~~i~~~-~~----------------------------------------g~l~v~~~~~~~i~~~~~~g~- 135 (300)
T 2qc5_A 98 PLPQPDSGPYGITEG-LN----------------------------------------GDIWFTQLNGDRIGKLTADGT- 135 (300)
T ss_dssp ECSSTTCCEEEEEEC-ST----------------------------------------TCEEEEETTTTEEEEECTTSC-
T ss_pred cCCCCCCCCccceEC-CC----------------------------------------CCEEEEccCCCeEEEECCCCC-
Confidence 222 122 7777653 21 136777754456888887733
Q ss_pred ceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 172 SKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
. . ...+. ....|.++++|.. ++||+++...+.|++++.+|........ .....|.+|++|. .++||
T Consensus 136 ~---~-~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~-------~~~~~~~~i~~d~-~g~l~ 202 (300)
T 2qc5_A 136 I---Y-EYDLPNKGSYPAFITLGSD-NALWFTENQNNSIGRITNTGKLEEYPLP-------TNAAAPVGITSGN-DGALW 202 (300)
T ss_dssp E---E-EEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECS-------STTCCEEEEEECT-TSSEE
T ss_pred E---E-EccCCCCCCCceeEEECCC-CCEEEEecCCCeEEEECCCCcEEEeeCC-------CCCCCcceEEECC-CCCEE
Confidence 2 1 12222 4567999999984 5699999888899999997654332121 3456799999996 67999
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
+++...++|.+.+++|.............|.+|++|+ .|.||+++.+ ..+|.+.+.+|.............|.+|++|
T Consensus 203 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGK-NSEIWFTEWG-ANQIGRITNDNTIQEYQLQTENAEPHGITFG 280 (300)
T ss_dssp EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECS-TTCEEEEETT-TTEEEEECTTSCEEEEECCSTTCCCCCEEEC
T ss_pred EEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECC-CCCEEEeccC-CCeEEEECCCCcEEEEECCccCCccceeEeC
Confidence 9999889999999988766544444577899999998 5889999975 6899999987654433233335789999999
Q ss_pred CCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 331 RKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 331 ~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
. .++||+++. . .|.+++.+
T Consensus 281 ~-~g~l~v~~~-~--~i~~~~p~ 299 (300)
T 2qc5_A 281 K-DGSVWFALK-C--KIGKLNLN 299 (300)
T ss_dssp T-TSCEEEECS-S--EEEEEEEC
T ss_pred C-CCCEEEEcc-C--ceEEeCCC
Confidence 5 578999887 4 88887653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-19 Score=165.59 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=191.4
Q ss_pred ecccc-CCCCcCCccccccCCCCeEEEEeCCC------------------------CcEEEEEcC-Cc-EEEEEeCCCCC
Q psy5792 7 LPYTR-NPSFGAVASTLKPQSGPFVYGVKTLS------------------------HSLHYVNIE-VK-VAKVVSMPDAA 59 (377)
Q Consensus 7 ~~~~~-~~~~~~~~~~~~d~~~~~ly~~d~~~------------------------~~I~~~~~d-G~-~~~i~~~~~~~ 59 (377)
.+|+. +.-++.|.|+++|++ ++||+++... +.|.++|.+ |+ .+.+ ....+.
T Consensus 14 ~~wp~~~~~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~ 91 (329)
T 3fvz_A 14 LDWPGVYLLPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-GKNLFY 91 (329)
T ss_dssp TTCGGGGCCCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-CTTTCS
T ss_pred cCCchhceecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-CCCccC
Confidence 46744 445889999999986 5899999877 479999997 66 5444 234567
Q ss_pred ceEEEEE-ECCeEEEEcCCCCceEEEcCCCCc--eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCc
Q psy5792 60 QVVAAVF-YKGRIIYSDANDGNIRSINLDGSN--STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKV 136 (377)
Q Consensus 60 ~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~ 136 (377)
.|.+|++ .++.||++|..+++|.+++.+|+. ...+.... .
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~------------~------------------------- 134 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM------------Q------------------------- 134 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT------------B-------------------------
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC------------C-------------------------
Confidence 8999999 577899999999999999977752 22221100 0
Q ss_pred cccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-CCCcEEEEEcC
Q psy5792 137 SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRD 215 (377)
Q Consensus 137 ~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-~~~~I~~~~~~ 215 (377)
.+.. ...+..|.++++|+.++.||++|. ..++|.+++.+
T Consensus 135 -------------------------------~g~~---------~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~ 174 (329)
T 3fvz_A 135 -------------------------------PGSD---------QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174 (329)
T ss_dssp -------------------------------CCCS---------TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred -------------------------------CCCC---------ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence 0000 013456899999987899999996 78999999998
Q ss_pred CCCcEEEEecccc--CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeC-CCCCceeEEEcCCCCe
Q psy5792 216 GTGRENIIEYVET--GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISG-GVDQPSALAVDPESGY 291 (377)
Q Consensus 216 G~~~~~i~~~~~~--~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~-~~~~P~~iavdp~~g~ 291 (377)
|.....+...... ..+..+..|.+||+|+.+++||++|..+++|.+.+++ |+....+... ....|.++++.| +.
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~ 252 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GF 252 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CE
Confidence 8665544321000 0012345699999998779999999999999999998 8877666432 245688888887 67
Q ss_pred EEEEecC------CCCeEEEEecCCCCeEEEEe---cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 292 LFWSESG------KIPLIARAGLDGKKQTILAQ---EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 292 lywtd~g------~~~~I~r~~ldG~~~~~l~~---~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
+|.++.. ...+|...++........+. ..+..|.+|++|+ ++.||++|. ..++|.+++++|.
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~-~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDA-HTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEES-SSCCEEEEEEEEC
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEEC-CCCEEEEEeCCcc
Confidence 7766521 24588888865433333332 3478899999996 459999999 9999999998864
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=164.57 Aligned_cols=238 Identities=15% Similarity=0.214 Sum_probs=177.0
Q ss_pred CCccccccCCCCeEEE-EeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEcCCCCceEE
Q psy5792 17 AVASTLKPQSGPFVYG-VKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSINLDGSNSTV 93 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~-~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~g~~~~~ 93 (377)
.|.++++|+.+ +||+ ++...+.|.+++.++. ...+ .......|.+|++. ++.||+++. .+.|.+++.++.....
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EEC-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceE-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 99999999865 6999 8888999999998777 4443 22455789999994 678999998 7788888755432111
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
+
T Consensus 102 ~------------------------------------------------------------------------------- 102 (270)
T 1rwi_B 102 L------------------------------------------------------------------------------- 102 (270)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
.......|.++++|+ +++||+++...+.|++++.. +....... ...+..|.+|++|+ .++||+++
T Consensus 103 ------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-~~~~~~~~------~~~~~~p~~i~~~~-~g~l~v~~ 167 (270)
T 1rwi_B 103 ------PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAG-SKTQTVLP------FTGLNDPDGVAVDN-SGNVYVTD 167 (270)
T ss_dssp ------CCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTT-CCSCEECC------CCSCCSCCCEEECT-TCCEEEEE
T ss_pred ------ecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECC-CceeEeec------cccCCCceeEEEeC-CCCEEEEE
Confidence 001223577888887 56799999888899999544 33333221 03456799999996 56799999
Q ss_pred CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 254 ~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
...++|.+.++++..........+..|.+|++|+ .|.||+++.+ ..+|.+.+.++.....+....+..|.++++|..
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~- 244 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHN-TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD- 244 (270)
T ss_dssp GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETT-TSCEEEECTTCSCCEECCCCSCSCEEEEEECTT-
T ss_pred CCCCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECC-CCcEEEEcCCCCcceeeccCCCCCceeEEECCC-
Confidence 9889999999998776544444568899999998 5799999975 689999999887665544334678999999964
Q ss_pred CEEEEEEeCCCCeEEEEEccCC
Q psy5792 334 KRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
++||+++. ..++|..++++..
T Consensus 245 g~l~v~~~-~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 245 RTVYVADR-GNDRVVKLTSLEH 265 (270)
T ss_dssp CCEEEEEG-GGTEEEEECCCGG
T ss_pred CCEEEEEC-CCCEEEEEcCCCc
Confidence 67999999 9999999988743
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-17 Score=150.36 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=199.1
Q ss_pred CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceE
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNST 92 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~ 92 (377)
....|.++++|++ ++||+++...+.|.+++++|....+........|.+|++ .++.+|+++...+.|.+++.+|+...
T Consensus 13 ~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~ 91 (299)
T 2z2n_A 13 QDTGPYGITVSDK-GKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKE 91 (299)
T ss_dssp SSCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred cCCCccceEECCC-CCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEE
Confidence 4578999999976 579999988899999999965444431234578999999 67799999988889999996665433
Q ss_pred EEec-CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 93 VLRN-NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 93 ~~~~-~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
.... ... |.++++. ++ ..++++....+.|.+++.++.
T Consensus 92 ~~~~~~~~~~~~i~~~-~~----------------------------------------g~l~v~~~~~~~i~~~d~~g~ 130 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEG-PN----------------------------------------GDIWFTEMNGNRIGRITDDGK 130 (299)
T ss_dssp EECSSTTCCEEEEEEC-TT----------------------------------------SCEEEEETTTTEEEEECTTCC
T ss_pred EeCCCcCCCceeeEEC-CC----------------------------------------CCEEEEecCCceEEEECCCCC
Confidence 2211 222 6776652 21 236777654445888877433
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
. ...........+.++++|. ++.+|+++...+.|++++.+|........ .....|.+|++|. .++||
T Consensus 131 -~---~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~-------~~~~~~~~i~~~~-~g~l~ 197 (299)
T 2z2n_A 131 -I---REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITESGDITEFKIP-------TPASGPVGITKGN-DDALW 197 (299)
T ss_dssp -E---EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECS-------STTCCEEEEEECT-TSSEE
T ss_pred -E---EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCC-------CCCCcceeEEECC-CCCEE
Confidence 1 1121122456799999997 56899999888899999985533222122 3456799999996 57899
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
+++...+.|.+.+++|.............|.+|++|+ +|.||+++.+ ...|.+.+.+|.............|.++++
T Consensus 198 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 198 FVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA-GIDLWFTEWG-ANKIGRLTSNNIIEEYPIQIKSAEPHGICF- 274 (299)
T ss_dssp EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECS-TTCEEEEETT-TTEEEEEETTTEEEEEECSSSSCCEEEEEE-
T ss_pred EEccCCceEEEECCCCcEEEEECCCCCCCceeEEECC-CCCEEEeccC-CceEEEECCCCceEEEeCCCCCCccceEEe-
Confidence 9998889999999977655433333567899999997 5889999974 689999998764322212233578999999
Q ss_pred CCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 331 RKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 331 ~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
.+++||+++. .+.|.+++.+.
T Consensus 275 -~~g~l~v~~~--~~~l~~~~~~~ 295 (299)
T 2z2n_A 275 -DGETIWFAME--CDKIGKLTLIK 295 (299)
T ss_dssp -CSSCEEEEET--TTEEEEEEEC-
T ss_pred -cCCCEEEEec--CCcEEEEEcCc
Confidence 6789999986 47888887763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-17 Score=148.25 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=180.7
Q ss_pred CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe----CCCCCceEEEEE--ECCeEEEEcCC-CCceEEEc
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS----MPDAAQVVAAVF--YKGRIIYSDAN-DGNIRSIN 85 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~----~~~~~~p~~lav--~~~~ly~td~~-~~~I~~~~ 85 (377)
.+..|.++++|+. ++||+++...+.|.+++++|. .+.+.. ......|.+|++ .+++||+++.. ++.|.+++
T Consensus 28 ~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCC-CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 3679999999986 579999999999999999998 666531 123468999999 47899999864 66777776
Q ss_pred CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 86 LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 86 ~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
.+|+.... +
T Consensus 107 ~~g~~~~~-----------------------------------------------------------------------~ 115 (286)
T 1q7f_A 107 QYGQFVRK-----------------------------------------------------------------------F 115 (286)
T ss_dssp TTSCEEEE-----------------------------------------------------------------------E
T ss_pred CCCcEEEE-----------------------------------------------------------------------e
Confidence 54432211 1
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
.. .....|.++++|+ +++||+++...+.|++++.+|.....+.. ...+..|.+|++|+
T Consensus 116 ~~--------------~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~------~~~~~~p~~i~~~~- 173 (286)
T 1q7f_A 116 GA--------------TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGC------SKHLEFPNGVVVND- 173 (286)
T ss_dssp CT--------------TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEEC------TTTCSSEEEEEECS-
T ss_pred cC--------------ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCC------CCccCCcEEEEECC-
Confidence 00 1123577888887 45799999888999999988755444432 02456799999996
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec-CCCC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-IIMP 323 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~~~~ 323 (377)
.++||+++...++|.+.+++|.....+... .+..|.+|++|+ +|.||+++.+.+.+|.+.+.+|.....+... ....
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQ 252 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSC
T ss_pred CCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCc
Confidence 678999999889999999999876655432 257899999998 6899999976324999999888776666543 2346
Q ss_pred ceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 324 IKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
|.++++++ +++||+++. .++|...++.
T Consensus 253 ~~~i~~~~-~g~l~vs~~--~~~v~v~~~~ 279 (286)
T 1q7f_A 253 CFDVALMD-DGSVVLASK--DYRLYIYRYV 279 (286)
T ss_dssp EEEEEEET-TTEEEEEET--TTEEEEEECS
T ss_pred ceeEEECC-CCcEEEECC--CCeEEEEEcc
Confidence 89999996 678999964 5788777665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=149.17 Aligned_cols=247 Identities=10% Similarity=0.051 Sum_probs=174.4
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCC------------------CCCceEEEEEE--CCeEEE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMP------------------DAAQVVAAVFY--KGRIIY 73 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~------------------~~~~p~~lav~--~~~ly~ 73 (377)
+..|.|+++|.. +.+||++...+.|.+++.++. .+.+.... ....|.||++. +++||+
T Consensus 18 ~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 18 SYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 578999999986 677889999999999999987 66553111 12469999996 689999
Q ss_pred EcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 74 SDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 74 td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
+|... .|.+++.++...+.+..
T Consensus 97 ~d~~~-~i~~~d~~~g~~~~~~~--------------------------------------------------------- 118 (322)
T 2fp8_A 97 VDCYY-HLSVVGSEGGHATQLAT--------------------------------------------------------- 118 (322)
T ss_dssp EETTT-EEEEECTTCEECEEEES---------------------------------------------------------
T ss_pred EECCC-CEEEEeCCCCEEEEecc---------------------------------------------------------
Confidence 99764 48878744322222110
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC-----------------CCcEEEEEcCC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-----------------HGTISRTHRDG 216 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-----------------~~~I~~~~~~G 216 (377)
. ..+ ..+..|.++++|..++.||++|.. .+.|++++.++
T Consensus 119 --------~----~~~------------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 119 --------S----VDG------------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp --------E----ETT------------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred --------c----CCC------------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 0 000 011246778888745689999864 26789998875
Q ss_pred CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC---eEEEEeeCCCCCceeEEEcCCCCeEE
Q psy5792 217 TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ---YRYVLISGGVDQPSALAVDPESGYLF 293 (377)
Q Consensus 217 ~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly 293 (377)
...+.+.. .+..|.+|++++.++.||++|...++|.++++++. ..+++.. +..|.+|++|+ +|.||
T Consensus 175 ~~~~~~~~--------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~gP~gi~~d~-~G~l~ 243 (322)
T 2fp8_A 175 KETTLLLK--------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNA-DGHFW 243 (322)
T ss_dssp TEEEEEEE--------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSSEEEEEECT-TSCEE
T ss_pred CEEEEecc--------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCCCCCeEECC-CCCEE
Confidence 44444443 56789999999876779999999999999999873 3334433 22299999997 68899
Q ss_pred EEecC---------CCCeEEEEecCCCCeEEEEecC---CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 294 WSESG---------KIPLIARAGLDGKKQTILAQEI---IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 294 wtd~g---------~~~~I~r~~ldG~~~~~l~~~~---~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
+++++ ...+|.+.+.+|.....+.... +..|.+++.+ .++||+++. ..+.|.+++++.....
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~-~~~~i~~~~~~~~~~~ 317 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTL-FHGSVGILVYDKKGNS 317 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECS-SCSEEEEEEC------
T ss_pred EEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEe--CCEEEEeec-CCCceEEEecccccCc
Confidence 99874 1367999998887666555432 5678888874 689999999 9999999998854433
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-16 Score=146.15 Aligned_cols=275 Identities=12% Similarity=0.019 Sum_probs=194.8
Q ss_pred CeEEEEeCC-----CCcEEEEEcCCc-E-EEEEe----CCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEe
Q psy5792 28 PFVYGVKTL-----SHSLHYVNIEVK-V-AKVVS----MPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR 95 (377)
Q Consensus 28 ~~ly~~d~~-----~~~I~~~~~dG~-~-~~i~~----~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~ 95 (377)
..+|+++.+ .+.|..+|++.. . ..+.. ......|.+|++.++++|++....+.|.++| .+++....+.
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~ 81 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT 81 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC
Confidence 467888887 789999999866 3 32310 1223568999999999999999889999999 7788777665
Q ss_pred cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceee
Q psy5792 96 NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVT 175 (377)
Q Consensus 96 ~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~ 175 (377)
....|.++++...+ .+++++...+.|..+++..... .
T Consensus 82 ~~~~p~~i~~~~~g-----------------------------------------~lyv~~~~~~~v~~iD~~t~~~--~ 118 (328)
T 3dsm_A 82 GFTSPRYIHFLSDE-----------------------------------------KAYVTQIWDYRIFIINPKTYEI--T 118 (328)
T ss_dssp CCSSEEEEEEEETT-----------------------------------------EEEEEEBSCSEEEEEETTTTEE--E
T ss_pred CCCCCcEEEEeCCC-----------------------------------------eEEEEECCCCeEEEEECCCCeE--E
Confidence 43348888863221 3777773444699998876532 1
Q ss_pred EEEEecCC----CCceEEEEEECCCCEEEEEEcC-CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 176 QVLGPLSK----VSLAAKVDFHAAEDYIYWVDID-HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 176 ~~~~~~~~----~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
...++.. ...|.+++++ +++||+++.. .+.|.++++........+. . -..|.++++|+ .+++|
T Consensus 119 -~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-------~-g~~p~~i~~~~-dG~l~ 186 (328)
T 3dsm_A 119 -GYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELT-------I-GIQPTSLVMDK-YNKMW 186 (328)
T ss_dssp -EEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEE-------C-SSCBCCCEECT-TSEEE
T ss_pred -EEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEE-------c-CCCccceEEcC-CCCEE
Confidence 1223222 1268888885 8999999984 7899999987433222232 1 24699999996 57899
Q ss_pred EEcCCC----------CEEEEEEcCCCeEE-EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeE--EEE
Q psy5792 251 WSDPKE----------NVIEVARLTGQYRY-VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT--ILA 317 (377)
Q Consensus 251 wtd~~~----------~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~--~l~ 317 (377)
++.... ++|.+.+++..... .+.......|++|+++|.+++||+++. .|++.+.+..... .++
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSCSB
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCceeeeeee
Confidence 998765 79999999865433 332222357999999999999999973 8888888643321 111
Q ss_pred ecCCCCceEEEEeCCCCEEEEEE----eCCCCeEEEEEccCCceEEEEe
Q psy5792 318 QEIIMPIKDITLDRKNKRVYWCY----SVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 318 ~~~~~~P~glalD~~~~~LYw~d----~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
......|.|+++|+.+++||+++ . ..++|..++.+|.-.+++-.
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~-~~~~V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQ-QQGIVYRYSPQGKLIDEFYV 310 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSS-SEEEEEEECTTCCEEEEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccc-cCCEEEEECCCCCEEEEEEe
Confidence 21136899999998899999999 7 78999999999765555543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=156.69 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=129.8
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCC----cEEEEEcCCCCcE-EEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHG----TISRTHRDGTGRE-NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN 257 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~----~I~~~~~~G~~~~-~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~ 257 (377)
....|.++++|..+++||++|...+ .+..+..+|.... ..+. .+.+|.++++|+..++|||+|...+
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--------~~~~p~giavdp~~g~lyv~d~~~~ 248 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--------KGQNCNGAETHPINGELYFNSWNAG 248 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--------ECSSCCCEEECTTTCCEEEEETTTT
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--------cCCCceEEEEeCCCCEEEEEECCCC
Confidence 4567999999998888999997543 5667787776542 2222 4678999999988899999999999
Q ss_pred EEEEEEcCCCeEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-----eEEEEec------------
Q psy5792 258 VIEVARLTGQYRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-----QTILAQE------------ 319 (377)
Q Consensus 258 ~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-----~~~l~~~------------ 319 (377)
+|+++++++.....+... ....|++|++||...+|||+|.. +++|++++.+|.. .+++...
T Consensus 249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~ 327 (430)
T 3tc9_A 249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK 327 (430)
T ss_dssp EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG
T ss_pred EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc
Confidence 999999998876444432 34679999999977779999985 7999999998752 2333332
Q ss_pred --CCCCce-EEEEeC-------CCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 320 --IIMPIK-DITLDR-------KNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 320 --~~~~P~-glalD~-------~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
.+..|. |++++. .++.||++|. .+++|.+++.+| ...++.
T Consensus 328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~-~n~~I~~i~~~G-~v~~~~ 377 (430)
T 3tc9_A 328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR-ENHCIRILTPQG-RVTTFA 377 (430)
T ss_dssp GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG-GGTEEEEECTTS-EEEEEE
T ss_pred ceEeCCCcceEEEccccccccCCCCeEEEEEC-CCcEEEEECCCC-cEEEEE
Confidence 267899 899963 4689999999 999999999876 344443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-15 Score=138.77 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=176.0
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEEe-cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceecccc
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVLR-NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGP 132 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~~-~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~ 132 (377)
.....|.+|++ .++.||+++...+.|.+++.+|+...... .... |.++.+. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~----------------------- 72 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SL----------------------- 72 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC-TT-----------------------
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEEC-CC-----------------------
Confidence 45678999999 67899999988899999996555443222 1222 6676652 22
Q ss_pred CCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 133 LSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 133 ~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
..++++....+.|.+++.++. . ....+. ....|.++++|. ++.||+++...+.|++
T Consensus 73 -----------------g~l~v~~~~~~~v~~~d~~g~-~----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 73 -----------------GDIWFTENGANKIGKLSKKGG-F----TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGK 129 (300)
T ss_dssp -----------------SCEEEEETTTTEEEEECTTSC-E----EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEE
T ss_pred -----------------CCEEEEecCCCeEEEECCCCC-e----EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEE
Confidence 236777765556888887733 2 112222 346799999996 6789999988889999
Q ss_pred EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 212 ~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
++.+|...+.... .....|.+|++|. .++||+++...+.|.+.+.+|.............|.+|++|+ +|.
T Consensus 130 ~~~~g~~~~~~~~-------~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~ 200 (300)
T 2qc5_A 130 LTADGTIYEYDLP-------NKGSYPAFITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGA 200 (300)
T ss_dssp ECTTSCEEEEECS-------STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSS
T ss_pred ECCCCCEEEccCC-------CCCCCceeEEECC-CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCC
Confidence 9998543322222 2456799999996 567999999889999999988766543334567899999998 789
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
||+++.+ ..+|.+.+.+|.............|.+|++|.. ++||+++. ..+.|.+++.+|.
T Consensus 201 l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~-~~~~i~~~~~~g~ 261 (300)
T 2qc5_A 201 LWFVEIM-GNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEW-GANQIGRITNDNT 261 (300)
T ss_dssp EEEEETT-TTEEEEECTTCCEEEEECSSTTCCEEEEEECST-TCEEEEET-TTTEEEEECTTSC
T ss_pred EEEEccC-CCEEEEEcCCCcEEEEECCCCCCCceEEEECCC-CCEEEecc-CCCeEEEECCCCc
Confidence 9999975 578999998766444333334678999999964 77999998 8899999999753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-16 Score=144.86 Aligned_cols=227 Identities=14% Similarity=0.126 Sum_probs=161.8
Q ss_pred CCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCC--ceEEEc-C
Q psy5792 12 NPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDG--NIRSIN-L 86 (377)
Q Consensus 12 ~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~--~I~~~~-~ 86 (377)
.|....|.|+++|.. ++|||+|...++|.+++.+|+ .+.+ .....|.+|++ .+++||++|...+ .|.+++ .
T Consensus 28 ~p~~~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~~~~~---~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 28 FPVNTFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQIHA---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp ECTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEE---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred CCCCCCcceEEECCC-CCEEEEeCCCCeEEEECCCCceEEEE---eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence 344578999999985 679999999999999999999 5544 33468999999 5678999997654 488887 6
Q ss_pred CCCceEEEec-CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 87 DGSNSTVLRN-NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 87 ~g~~~~~~~~-~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
+|+...+... ... +.|+++. + ...+++++...+.|.+
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~-~----------------------------------------~~~~~v~d~~~g~i~~ 142 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPL-S----------------------------------------DTQYLTADSYRGAIWL 142 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEES-S----------------------------------------SSEEEEEETTTTEEEE
T ss_pred CCeEEEEEeCCCccccCccccc-C----------------------------------------CCcEEEEECCCCeEEE
Confidence 6765433321 111 4444431 1 1246667755567888
Q ss_pred EEcCCCCceeeEEE---------EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC--C--CcEEEEeccccCCC
Q psy5792 165 IKYNKNESKVTQVL---------GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG--T--GRENIIEYVETGDP 231 (377)
Q Consensus 165 ~~l~~~~~~~~~~~---------~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G--~--~~~~i~~~~~~~~~ 231 (377)
++.+.... ... .+...+..|.+++.| ++.||++|...++|+++++++ . ..+.+..
T Consensus 143 ~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngis~d--g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------- 210 (306)
T 2p4o_A 143 IDVVQPSG---SIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------- 210 (306)
T ss_dssp EETTTTEE---EEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-------
T ss_pred EeCCCCcE---eEEEECCccccccccCCCCcCCCcCcC--CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-------
Confidence 88764311 111 112345578888444 789999999999999999984 2 2333332
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCCCCceeEEEc---CCCCeEEEEecC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVD---PESGYLFWSESG 298 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~P~~iavd---p~~g~lywtd~g 298 (377)
+..|.+|++|. .++||+++...++|.+++.+|+...+. +...+..|.+++++ |..+.||+++.+
T Consensus 211 --~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 211 --QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 35799999996 679999999999999999998764321 23346889999998 778999999864
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=154.44 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=124.0
Q ss_pred CCCceEEEEEECCCCEEEEEEcCC----CcEEEEEcCCCCcE-EEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDH----GTISRTHRDGTGRE-NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN 257 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~----~~I~~~~~~G~~~~-~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~ 257 (377)
....|.++++|+.++ ||++|... ..+..+..++.... ... ..+..|.++++|+..++|||+|..++
T Consensus 180 ~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--------~~~~~P~giavd~~~G~lyv~d~~~~ 250 (433)
T 4hw6_A 180 NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSL--------CNARGAKTCAVHPQNGKIYYTRYHHA 250 (433)
T ss_dssp CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEE--------EECSSBCCCEECTTTCCEEECBTTCS
T ss_pred CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccc--------cccCCCCEEEEeCCCCeEEEEECCCC
Confidence 345689999998766 99999743 23555665554331 222 24678999999988999999999999
Q ss_pred EEEEEEcC-CCeEEEEee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-----eEEEEec-----------
Q psy5792 258 VIEVARLT-GQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-----QTILAQE----------- 319 (377)
Q Consensus 258 ~I~~~~~~-g~~~~~l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-----~~~l~~~----------- 319 (377)
+|++++++ |.....+.. .....|.+|++||..++|||+|.+ +++|.++++++.. ..++...
T Consensus 251 ~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~-~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~ 329 (433)
T 4hw6_A 251 MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG-KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG 329 (433)
T ss_dssp EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence 99999998 655344443 234456789999987789999986 7999999988532 2344332
Q ss_pred ---CCCCceEEEE---------eCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 320 ---IIMPIKDITL---------DRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 320 ---~~~~P~glal---------D~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
.+..|.||++ | .+++||++|. .+++|.+++.+| ...++.
T Consensus 330 ~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~-~n~~I~~~~~~G-~v~t~~ 380 (433)
T 4hw6_A 330 TGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDR-DSHTVRVLTPEG-RVTTYA 380 (433)
T ss_dssp GGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEET-TTTEEEEECTTS-EEEEEE
T ss_pred cceEEcCCccEEEEccccccccC-CCCcEEEEEC-CCCEEEEECCCC-CEEEEE
Confidence 2678999999 6 6799999999 999999999886 344443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-16 Score=144.62 Aligned_cols=253 Identities=11% Similarity=0.087 Sum_probs=182.8
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
...|.+++++ +++||++....+.|..+|++.. ..++ .....|.+|++ .+++||+++...+.|.++| .+++.
T Consensus 43 g~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~ 117 (328)
T 3dsm_A 43 GDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI 117 (328)
T ss_dssp BSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE
T ss_pred CccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE
Confidence 3457888885 5799999999999999999855 5666 45689999999 8889999997788999999 56665
Q ss_pred eEEEecCC------CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC-CCCeEE
Q psy5792 91 STVLRNNA------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN-SGYDIM 163 (377)
Q Consensus 91 ~~~~~~~~------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~-~~~~I~ 163 (377)
...+.... .|.++++ .+ ..+++++. ..+.|.
T Consensus 118 ~~~i~~g~~~~~~~~p~~i~~--~~----------------------------------------~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 118 TGYIECPDMDMESGSTEQMVQ--YG----------------------------------------KYVYVNCWSYQNRIL 155 (328)
T ss_dssp EEEEECTTCCTTTCBCCCEEE--ET----------------------------------------TEEEEEECTTCCEEE
T ss_pred EEEEEcCCccccCCCcceEEE--EC----------------------------------------CEEEEEcCCCCCEEE
Confidence 55554433 4666665 11 24777764 245699
Q ss_pred EEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC----------CcEEEEEcCCCCcEEEEeccccCCCCC
Q psy5792 164 GIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH----------GTISRTHRDGTGRENIIEYVETGDPTP 233 (377)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~----------~~I~~~~~~G~~~~~i~~~~~~~~~~~ 233 (377)
.+++..... +..+.....|.++.+++ ++++|+++... +.|++++.........+.. ..
T Consensus 156 viD~~t~~~-----~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~------~~ 223 (328)
T 3dsm_A 156 KIDTETDKV-----VDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF------KL 223 (328)
T ss_dssp EEETTTTEE-----EEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC------CT
T ss_pred EEECCCCeE-----EEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec------CC
Confidence 998876532 12222345688899987 57899988654 7899999874332222220 11
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--EEeeCCCCCceeEEEcCCCCeEEEEe----cCCCCeEEEEe
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--VLISGGVDQPSALAVDPESGYLFWSE----SGKIPLIARAG 307 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--~l~~~~~~~P~~iavdp~~g~lywtd----~g~~~~I~r~~ 307 (377)
-..|.+|++++.++.||+++. +|.+.+++..... .++......|.+|++||.+++||+++ .. +.+|.+.+
T Consensus 224 g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-~~~V~v~d 299 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-QGIVYRYS 299 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-EEEEEEEC
T ss_pred CCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-CCEEEEEC
Confidence 247999999998999999987 7999998764421 12222256899999999999999999 53 67999999
Q ss_pred cCCCCeEEEEecCCCCceEEEEeCC
Q psy5792 308 LDGKKQTILAQEIIMPIKDITLDRK 332 (377)
Q Consensus 308 ldG~~~~~l~~~~~~~P~glalD~~ 332 (377)
.+|+..+.+-.. ..|.+++.-++
T Consensus 300 ~~g~~~~~i~~G--~~P~~~~~~~~ 322 (328)
T 3dsm_A 300 PQGKLIDEFYVG--IIPGAFCWKLE 322 (328)
T ss_dssp TTCCEEEEEEEE--ESEEEEEEECC
T ss_pred CCCCEEEEEEec--cCcceEEEecc
Confidence 998776666543 57999888543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-15 Score=133.83 Aligned_cols=240 Identities=15% Similarity=0.147 Sum_probs=172.4
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEEec-CCC-ceeEEeeecCCCCcccCCCcCCCCCCceecccc
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVLRN-NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGP 132 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~-~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~ 132 (377)
.....|.+|++ .++.||+++...+.|.+++.+|+....... ... |.++++. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~-~~----------------------- 67 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTIS-SD----------------------- 67 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC-TT-----------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEEC-CC-----------------------
Confidence 44678999999 577999999888899999966554333211 222 6676652 21
Q ss_pred CCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 133 LSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 133 ~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
..++++....+.|.+++.++. . .. ..+ .....|.++++|. ++.||+++...+.|++
T Consensus 68 -----------------g~l~v~~~~~~~i~~~~~~g~-~---~~-~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~ 124 (299)
T 2z2n_A 68 -----------------GEVWFTENAANKIGRITKKGI-I---KE-YTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGR 124 (299)
T ss_dssp -----------------SCEEEEETTTTEEEEECTTSC-E---EE-EECSSTTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred -----------------CCEEEeCCCCCeEEEECCCCc-E---EE-EeCCCcCCCceeeEECC-CCCEEEEecCCceEEE
Confidence 236677654456888887643 1 11 222 2456799999997 6789999988889999
Q ss_pred EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 212 ~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
++.+|........ .....|.+|++|. .++||+++...+.|.+.+++|.............|.+|++|+ .|.
T Consensus 125 ~d~~g~~~~~~~~-------~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~ 195 (299)
T 2z2n_A 125 ITDDGKIREYELP-------NKGSYPSFITLGS-DNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDA 195 (299)
T ss_dssp ECTTCCEEEEECS-------STTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSS
T ss_pred ECCCCCEEEecCC-------CCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECC-CCC
Confidence 9986543322222 3455799999995 579999998888999999977665443444567899999998 588
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
||+++.. ...|.+.+.+|.............|.+|++|. +++||+++. ..+.|.+++.+|
T Consensus 196 l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~~~~i~~~d~~g 255 (299)
T 2z2n_A 196 LWFVEII-GNKIGRITTSGEITEFKIPTPNARPHAITAGA-GIDLWFTEW-GANKIGRLTSNN 255 (299)
T ss_dssp EEEEETT-TTEEEEECTTCCEEEEECSSTTCCEEEEEECS-TTCEEEEET-TTTEEEEEETTT
T ss_pred EEEEccC-CceEEEECCCCcEEEEECCCCCCCceeEEECC-CCCEEEecc-CCceEEEECCCC
Confidence 9999974 57999999866533321222357899999995 477999998 889999999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=147.20 Aligned_cols=165 Identities=13% Similarity=0.135 Sum_probs=121.8
Q ss_pred EEEECCCCEEEEEEcCCC-cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 190 VDFHAAEDYIYWVDIDHG-TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~-~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
+++++.++.|||++...+ +|++++.++......... ........|.++|+|+.+++||+++. .++|.++++++..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~---~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ---LGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE---CCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCC
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee---ccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC
Confidence 777888889999998655 999999986554333310 00024567999999988899999876 6799999999876
Q ss_pred EEEE----eeC-CCCCce-eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC--------------CCCceEEE
Q psy5792 269 RYVL----ISG-GVDQPS-ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--------------IMPIKDIT 328 (377)
Q Consensus 269 ~~~l----~~~-~~~~P~-~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~--------------~~~P~gla 328 (377)
...+ ... ....|. +|++||.++.||++|.. +++|++.+.+|. ...+.... +..|.||+
T Consensus 252 ~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 252 VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 5544 211 123477 99999988999999985 789999999987 33444332 67899999
Q ss_pred EeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 329 LDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 329 lD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
+|.. ++||++|....++|.++++..+...++.
T Consensus 330 ~d~d-G~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 330 VDED-GNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ECTT-CCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCC-CCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 9965 6699999524789999995544444443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=139.02 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=133.4
Q ss_pred CceEEEEEECCCCEEEEEEcC-CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDID-HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
..|.+++++..++.||+++.. .+.|.+++.+|.....+.. .....|.+|++|+ .++||+++...++|.+.+
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~-------~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA-------TILQHPRGVTVDN-KGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECT-------TTCSCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecC-------ccCCCceEEEEeC-CCCEEEEECCCCEEEEEc
Confidence 457888887668999999964 7899999987755444433 3456799999997 578999999889999999
Q ss_pred cCCCeEEEEee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec-CCCCceEEEEeCCCCEEEEEEe
Q psy5792 264 LTGQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-IIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 264 ~~g~~~~~l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~ 341 (377)
.+|.....+.. ..+..|++|++|+ +|.||+++.. ..+|.+.+.+|.....+... .+..|.+|++|. +++||+++.
T Consensus 149 ~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~ 225 (286)
T 1q7f_A 149 QNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS-NGEILIADN 225 (286)
T ss_dssp TTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCEEEEESCTTTSCSEEEEEECT-TCCEEEEEC
T ss_pred CCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-CCEEEEEcCCCCEEEEEccCCccCCCcEEEECC-CCCEEEEeC
Confidence 99987665543 3467899999998 6889999975 68999999988765554333 257899999995 578999999
Q ss_pred CCCC-eEEEEEccCCceEEEEecCCCCCcc
Q psy5792 342 VGSN-VLESMDYSGGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 342 ~~~~-~i~~~~~~G~~~~~~~~~~~~~~p~ 370 (377)
..+ +|..++.+|...+++........|.
T Consensus 226 -~~~~~i~~~~~~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 226 -HNNFNLTIFTQDGQLISALESKVKHAQCF 254 (286)
T ss_dssp -SSSCEEEEECTTSCEEEEEEESSCCSCEE
T ss_pred -CCCEEEEEECCCCCEEEEEcccCCCCcce
Confidence 776 9999998876555554433333343
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-15 Score=136.25 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=159.6
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSK 135 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~ 135 (377)
....|.++++ .++.|||+|..+++|++++.+|+....+.....|.+|++. ++.
T Consensus 30 ~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~-~dG------------------------- 83 (306)
T 2p4o_A 30 VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFT-SNG------------------------- 83 (306)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEEC-TTS-------------------------
T ss_pred CCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEc-CCC-------------------------
Confidence 3468999999 5678999999999999999877655544433238888763 221
Q ss_pred ccccCCcCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEE
Q psy5792 136 VSLAAKVDFHAGISDFILFSVNS--GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTH 213 (377)
Q Consensus 136 ~~~~~G~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~ 213 (377)
.+++++.. ...|.+++...... ..+........+.+++.. .++++|++|...+.|++++
T Consensus 84 ---------------~l~vad~~~~~~~v~~~d~~~g~~---~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 84 ---------------DLVATGWNADSIPVVSLVKSDGTV---ETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp ---------------CEEEEEECTTSCEEEEEECTTSCE---EEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEE
T ss_pred ---------------cEEEEeccCCcceEEEEcCCCCeE---EEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEe
Confidence 26666622 22377766544333 233333444556777754 4789999998889999999
Q ss_pred cCCCCcEEEEecccc---CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC--C--eEEEEeeCCCCCceeEEEc
Q psy5792 214 RDGTGRENIIEYVET---GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG--Q--YRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 214 ~~G~~~~~i~~~~~~---~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--~--~~~~l~~~~~~~P~~iavd 286 (377)
.++...+........ .....+..|.+|.. .+++||++|...++|.++++++ . ..+++.. +..|.+|++|
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd 220 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFD 220 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEB
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEEC
Confidence 875322222110000 01134567999944 4789999999999999999985 2 2333333 4679999999
Q ss_pred CCCCeEEEEecCCCCeEEEEecCCCCeEEE-EecCCCCceEEEEe---CCCCEEEEEEe
Q psy5792 287 PESGYLFWSESGKIPLIARAGLDGKKQTIL-AQEIIMPIKDITLD---RKNKRVYWCYS 341 (377)
Q Consensus 287 p~~g~lywtd~g~~~~I~r~~ldG~~~~~l-~~~~~~~P~glalD---~~~~~LYw~d~ 341 (377)
+ +|.||+++++ +.+|.+++.+|+...+. +...+.+|.+++++ ...++||+++.
T Consensus 221 ~-dG~l~va~~~-~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 221 V-EGNLYGATHI-YNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp T-TCCEEEECBT-TCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred C-CCCEEEEeCC-CCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 8 6899999986 68999999887543221 12236789999998 56799999998
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-14 Score=131.28 Aligned_cols=273 Identities=9% Similarity=0.069 Sum_probs=191.1
Q ss_pred CCcCCccccccCCCCeEEEEeCC------CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEE
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTL------SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSI 84 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~------~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~ 84 (377)
....|.++++++++++||++... .+.|..+|+++. ....+ .....|.++++ .++++|+++...+.|..+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI--HNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE--EESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE--ecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 34578999999999999999976 678999999766 33333 33456888998 445799999988999999
Q ss_pred c-CCCCceEEEecCCC----------ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 85 N-LDGSNSTVLRNNAG----------ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 85 ~-~~g~~~~~~~~~~~----------p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
+ .+|+....+..... |.++.+ +++. ..++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg---------------------------------------~~l~ 156 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA-DDAT---------------------------------------NTVY 156 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE-ETTT---------------------------------------TEEE
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEE-CCCC---------------------------------------CEEE
Confidence 9 66766555543210 333333 2221 2466
Q ss_pred EEe-CCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 154 FSV-NSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 154 ~s~-~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++. ...+.|..+++..... +..+. ....+.++++++.++.||+++. .+.|..+++........... ...
T Consensus 157 ~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~---~~~ 227 (353)
T 3vgz_A 157 ISGIGKESVIWVVDGGNIKL-----KTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKL---LDD 227 (353)
T ss_dssp EEEESSSCEEEEEETTTTEE-----EEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEEC---CCS
T ss_pred EEecCCCceEEEEcCCCCce-----EEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEc---CCC
Confidence 666 3445688888875532 22223 2345888999998999999985 67899888864333222220 000
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
.....|.++++++.++.||+++...+.|.+.++........+. ...|.+++++|..++||+++.. ...|...++...
T Consensus 228 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~-~~~v~~~d~~~~ 304 (353)
T 3vgz_A 228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA--APESLAVLFNPARNEAYVTHRQ-AGKVSVIDAKSY 304 (353)
T ss_dssp SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE--CSSCCCEEEETTTTEEEEEETT-TTEEEEEETTTT
T ss_pred CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCceEEECCCCCEEEEEECC-CCeEEEEECCCC
Confidence 0123477899999888899999988999999997654433333 3457899999988889999975 589999998654
Q ss_pred CeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 312 ~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
.....+.. -..|.++++++.++.||++..
T Consensus 305 ~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 305 KVVKTFDT-PTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEEEC-CSEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEEec-CCCCCeEEEcCCCCEEEEEEc
Confidence 43333333 358999999988888999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-15 Score=146.83 Aligned_cols=167 Identities=11% Similarity=0.128 Sum_probs=125.1
Q ss_pred CCceEEEEE-------ECCCCEEEEEEcCCC------cEEEEEcCC--CCcE----EEEeccccCCCCCCCCcceEEEec
Q psy5792 184 VSLAAKVDF-------HAAEDYIYWVDIDHG------TISRTHRDG--TGRE----NIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 184 ~~~~~~l~~-------d~~~~~ly~sd~~~~------~I~~~~~~G--~~~~----~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
+.+|.++++ |..+++||++|...+ .|+.++.+. .... ..+. ...+|.++++|+
T Consensus 185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--------~~~~p~giavdp 256 (496)
T 3kya_A 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA--------AYKQCNGATIHP 256 (496)
T ss_dssp CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--------EESCCCCEEECT
T ss_pred cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec--------cCCCceEEEEcC
Confidence 346888888 887888999998753 377775543 3321 2222 356899999999
Q ss_pred cCCeEEEEcCCCCEEEEEEcC--------CCe-----------EEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 245 IAQNIYWSDPKENVIEVARLT--------GQY-----------RYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~--------g~~-----------~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
.+++||+++...++|++++++ +.. .+.+... ....|.+||+||....||++|.+ +++|+
T Consensus 257 ~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-~h~I~ 335 (496)
T 3kya_A 257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-NHYFM 335 (496)
T ss_dssp TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEE
T ss_pred CCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-CCEEE
Confidence 899999999999999999997 322 2233332 34579999999987789999986 79999
Q ss_pred EEecCCCCe-----EEEEec--------------CCCCce-EEEEeC------CCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 305 RAGLDGKKQ-----TILAQE--------------IIMPIK-DITLDR------KNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 305 r~~ldG~~~-----~~l~~~--------------~~~~P~-glalD~------~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
+++++|... .++... .|.+|. |+++|. .++.||++|. .+++|++++.+| ...
T Consensus 336 kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~-~N~rIr~i~~~G-~v~ 413 (496)
T 3kya_A 336 RSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR-LNFCVRKVTPEG-IVS 413 (496)
T ss_dssp EEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG-GGTEEEEECTTC-BEE
T ss_pred EEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC-CCCEEEEEeCCC-CEE
Confidence 999988642 344432 367899 888873 5789999999 999999999886 455
Q ss_pred EEE
Q psy5792 359 QLK 361 (377)
Q Consensus 359 ~~~ 361 (377)
++.
T Consensus 414 Tia 416 (496)
T 3kya_A 414 TYA 416 (496)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=141.57 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=131.8
Q ss_pred CCCceEEEEEECCCCEEEEEEcCC------------------------CcEEEEEcC-CCCcEEEEeccccCCCCCCCCc
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDH------------------------GTISRTHRD-GTGRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~------------------------~~I~~~~~~-G~~~~~i~~~~~~~~~~~~~~p 237 (377)
.+..+.++++|+ +++||+++... +.|++++.+ |........ ..+..|
T Consensus 22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~~p 93 (329)
T 3fvz_A 22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-------NLFYLP 93 (329)
T ss_dssp CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-------TTCSSE
T ss_pred ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-------CccCCc
Confidence 467799999998 57999999876 368888886 433222222 346689
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcCCC--eEEEEe--------eCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQ--YRYVLI--------SGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~g~--~~~~l~--------~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
.+||+|+ .++||++|...++|.+.+++|. ....+. ...+..|.+|++||.+|.||++|...+.+|.+.+
T Consensus 94 ~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 94 HGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred eEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 9999996 6779999999999999999997 444443 2346689999999989999999951268999999
Q ss_pred cCCCCeEEEEec---------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc-CCceEEE
Q psy5792 308 LDGKKQTILAQE---------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS-GGSKMQL 360 (377)
Q Consensus 308 ldG~~~~~l~~~---------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~-G~~~~~~ 360 (377)
.+|.....+... .+..|.||++|+.+++||++|. ..++|..++.+ |.-.+++
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-ENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-TTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-CCCEEEEEECCCCcEEEEE
Confidence 999877666422 2567999999987799999999 99999999998 6544444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-14 Score=128.57 Aligned_cols=236 Identities=12% Similarity=0.081 Sum_probs=170.5
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC-CCCceE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL-DGSNST 92 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~g~~~~ 92 (377)
+..|.|++.|++++.|||++...+.|.++++++..+.+. .....|.+|++ .++.||+++...+.|.+++. +|+...
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEM--HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEE--SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEE--CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 568999999998888999999999999999998833343 44567999999 67789999988888998884 664322
Q ss_pred EEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCc
Q psy5792 93 VLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172 (377)
Q Consensus 93 ~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~ 172 (377)
.... . .+
T Consensus 105 ~~~~-----------------------------------------------------------~-----------~~--- 111 (296)
T 3e5z_A 105 IADS-----------------------------------------------------------F-----------EG--- 111 (296)
T ss_dssp EECE-----------------------------------------------------------E-----------TT---
T ss_pred Eeec-----------------------------------------------------------c-----------CC---
Confidence 2110 0 00
Q ss_pred eeeEEEEecCCCCceEEEEEECCCCEEEEEEc-----------------CCCcEEEEEcCCCCcEEEEeccccCCCCCCC
Q psy5792 173 KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-----------------DHGTISRTHRDGTGRENIIEYVETGDPTPVD 235 (377)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-----------------~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~ 235 (377)
.....+.++++|+ ++++|++|. ..+.|++++.+|. .+.+. ..+.
T Consensus 112 ---------~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~--------~~~~ 172 (296)
T 3e5z_A 112 ---------KKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPI--------RDRV 172 (296)
T ss_dssp ---------EECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEE--------CCCS
T ss_pred ---------CCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEee--------cCCC
Confidence 0011244566676 567888764 2358998888743 33333 4677
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEEEEcC--CCe---EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLT--GQY---RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~~~~~--g~~---~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
.|.+|++++.++.| |++...++|.+.+++ |.. .+++ ......|.+|++|+ +|.||++. ...|.+.+.+|
T Consensus 173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~-~G~l~v~~---~~~v~~~~~~g 246 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDA-GGLIWASA---GDGVHVLTPDG 246 (296)
T ss_dssp SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBT-TSCEEEEE---TTEEEEECTTS
T ss_pred CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECC-CCCEEEEc---CCeEEEECCCC
Confidence 89999999866666 999999999999985 444 3344 44566799999997 68899998 36899999997
Q ss_pred CCeEEEEecCCCCceEEEEe-CCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 311 KKQTILAQEIIMPIKDITLD-RKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 311 ~~~~~l~~~~~~~P~glalD-~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.....+... .. |..++++ ...+.||++.. +.+.+++....
T Consensus 247 ~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~---~~l~~~~~~~~ 287 (296)
T 3e5z_A 247 DELGRVLTP-QT-TSNLCFGGPEGRTLYMTVS---TEFWSIETNVR 287 (296)
T ss_dssp CEEEEEECS-SC-CCEEEEESTTSCEEEEEET---TEEEEEECSCC
T ss_pred CEEEEEECC-CC-ceeEEEECCCCCEEEEEcC---CeEEEEEcccc
Confidence 765555443 24 8999995 45567888766 57999988743
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-13 Score=122.88 Aligned_cols=280 Identities=8% Similarity=0.061 Sum_probs=189.2
Q ss_pred cccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc-eEEEe
Q psy5792 22 LKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN-STVLR 95 (377)
Q Consensus 22 ~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~-~~~~~ 95 (377)
..+..+.++|+++...+.|..+|++.. ...+. .....| ++++ .+.+||+++...+.|..++ .+++. ...+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 455667899999999999999999866 44443 445567 9999 4557999999889999999 56665 44444
Q ss_pred cCCCcee-EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEEEEcCCCCc
Q psy5792 96 NNAGISD-FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMGIKYNKNES 172 (377)
Q Consensus 96 ~~~~p~~-i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~~~l~~~~~ 172 (377)
....|.. +.+ +++.+ +++.+....+ .|..++++....
T Consensus 81 ~~~~~~~~~~~-s~dg~---------------------------------------~l~~~~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 81 EGQSSMADVDI-TPDDQ---------------------------------------FAVTVTGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp ECSSCCCCEEE-CTTSS---------------------------------------EEEECCCSSSSCEEEEEETTTTEE
T ss_pred cCCCCccceEE-CCCCC---------------------------------------EEEEecCCCCcccEEEEECCCCCe
Confidence 4434555 544 33322 3443333312 588888876532
Q ss_pred eeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCc-EEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 173 KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGT-ISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~-I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
+..+.....+.++++++.+++||+++...+. |...+++......-...... ..-..|.++++++.++.||+
T Consensus 121 -----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 121 -----ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI---SGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp -----EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE---CSSSSEEEEEECTTSSEEEE
T ss_pred -----EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc---cCCCCccceEECCCCCEEEE
Confidence 2223344568999999988889999988777 77777764322110000000 12345999999988778999
Q ss_pred EcCCCCEEEEEEcCCCeE---EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe--cC------
Q psy5792 252 SDPKENVIEVARLTGQYR---YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ--EI------ 320 (377)
Q Consensus 252 td~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~--~~------ 320 (377)
++...++|.+.+++.... ...+.. ...|.+++++|...+||++..+ ...|...++.....+.+.. ..
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES-TVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS-EEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcC-CCEEEEEECCCCceeeecccccccccCCC
Confidence 999889999999975432 222332 4679999999988889999864 4678888887543322211 11
Q ss_pred -CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 321 -IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 321 -~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
....+++++.+.+++||++.. ..+.|...++.+.
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISAN-ISRELKVFTISGK 305 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTSC
T ss_pred CcccccceEECCCCCEEEEecC-CCCcEEEEEecCC
Confidence 111245899988899999999 8899999999854
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=131.55 Aligned_cols=190 Identities=14% Similarity=0.173 Sum_probs=140.6
Q ss_pred EEEE-EeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 151 FILF-SVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 151 ~l~~-s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.+++ ++...+.|.+++.++... ...+......|.++++|. ++.||+++. .+.|++++.+|.....+..
T Consensus 36 ~l~v~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~----- 104 (270)
T 1rwi_B 36 NVYVTSEGMYGRVVKLATGSTGT----TVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPF----- 104 (270)
T ss_dssp CEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCC-----
T ss_pred CEEEEccCCCCcEEEecCCCccc----ceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeec-----
Confidence 4777 655555688887654422 223334556799999998 456999998 7899999998865544433
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
..+..|.+|++|+ .++||+++...++|.+.+.............+..|.+|++|+ +|.||+++.+ ..+|.+.+.+
T Consensus 105 --~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~ 179 (270)
T 1rwi_B 105 --DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAE 179 (270)
T ss_dssp --CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-GTEEEEECTT
T ss_pred --CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECC-CCEEEEEecC
Confidence 3456799999997 678999999889999997654433333333467899999998 6789999975 5799999999
Q ss_pred CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 310 GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 310 G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
+..........+..|.+|++|. +++||+++. ..++|.+++.+|....
T Consensus 180 ~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~-~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 180 SNNQVVLPFTDITAPWGIAVDE-AGTVYVTEH-NTNQVVKLLAGSTTST 226 (270)
T ss_dssp TCCEEECCCSSCCSEEEEEECT-TCCEEEEET-TTSCEEEECTTCSCCE
T ss_pred CCceEeecccCCCCceEEEECC-CCCEEEEEC-CCCcEEEEcCCCCcce
Confidence 8766554444468899999996 469999999 8899999999875443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-13 Score=124.60 Aligned_cols=227 Identities=11% Similarity=0.137 Sum_probs=161.2
Q ss_pred CCCCceEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 56 PDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 56 ~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
.....+.|.++. ++.|||+|...++|++++.++.....+.....|.++++ +++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~-~~dG----------------------- 65 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVAL-RQSG----------------------- 65 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEE-BTTS-----------------------
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEE-CCCC-----------------------
Confidence 566788999984 58999999999999999955544444443333666665 2222
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC---CCCceEEEEEECCCCEEEEEEc------
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS---KVSLAAKVDFHAAEDYIYWVDI------ 204 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~---~~~~~~~l~~d~~~~~ly~sd~------ 204 (377)
.++++..+. |.+++.+.... ..+.... ....+.++++|+ ++++|+++.
T Consensus 66 -----------------~l~v~~~~~--l~~~d~~~g~~---~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~ 122 (297)
T 3g4e_A 66 -----------------GYVATIGTK--FCALNWKEQSA---VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAP 122 (297)
T ss_dssp -----------------SEEEEETTE--EEEEETTTTEE---EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBT
T ss_pred -----------------CEEEEECCe--EEEEECCCCcE---EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccccc
Confidence 266666655 88888875533 2222221 234588999998 566999873
Q ss_pred -----CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC---CCe--EEEEee
Q psy5792 205 -----DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT---GQY--RYVLIS 274 (377)
Q Consensus 205 -----~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~---g~~--~~~l~~ 274 (377)
..+.|++++.+|.. ..+. ..+..|.+|++++.++.|||++...++|.+++++ |.. ++++..
T Consensus 123 ~~~~~~~~~l~~~d~~g~~-~~~~--------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~ 193 (297)
T 3g4e_A 123 AVLERHQGALYSLFPDHHV-KKYF--------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK 193 (297)
T ss_dssp TBCCTTCEEEEEECTTSCE-EEEE--------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE
T ss_pred ccccCCCcEEEEEECCCCE-EEEe--------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE
Confidence 23589999887643 3333 3566799999998888899999999999999874 332 334443
Q ss_pred C--CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEe-CCCCEEEEEEe
Q psy5792 275 G--GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLD-RKNKRVYWCYS 341 (377)
Q Consensus 275 ~--~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD-~~~~~LYw~d~ 341 (377)
. ....|.++++|+ +|.||+++++ ..+|.+.+.+ |+....+... ..+|..+++. +..++||++..
T Consensus 194 ~~~~~~~p~g~~~d~-~G~lwva~~~-~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 194 LEKEEQIPDGMCIDA-EGKLWVACYN-GGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CCGGGCEEEEEEEBT-TSCEEEEEET-TTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCCCCeeEECC-CCCEEEEEcC-CCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence 2 235799999997 6899999985 5789999997 6655554332 4689999997 56789999987
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-12 Score=118.59 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=201.0
Q ss_pred CeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeE
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDF 103 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i 103 (377)
+++|++....+.|...|++.. ....+ .....|.++++ .+.+||++....+.|..++ .+|+....+.....+.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 578999999999999999866 33333 34456899999 4557899988888999999 667666555443346666
Q ss_pred EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC
Q psy5792 104 ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183 (377)
Q Consensus 104 ~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~ 183 (377)
++ +++. ..|+++....+.|+.+++..... +..+..
T Consensus 80 ~~-spdg---------------------------------------~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~~ 114 (391)
T 1l0q_A 80 AV-SPDG---------------------------------------KQVYVTNMASSTLSVIDTTSNTV-----AGTVKT 114 (391)
T ss_dssp EE-CTTS---------------------------------------SEEEEEETTTTEEEEEETTTTEE-----EEEEEC
T ss_pred EE-CCCC---------------------------------------CEEEEEECCCCEEEEEECCCCeE-----EEEEeC
Confidence 54 3322 25777776656799999876532 222334
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+.++++++.++.||++....+.|+..++.......... .-..|.++++++.++.||++....++|.+.+
T Consensus 115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d 186 (391)
T 1l0q_A 115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------VGRSPKGIAVTPDGTKVYVANFDSMSISVID 186 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------CCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--------cCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 45789999999888999999888999999987544333333 2346899999988888999988889999999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
+........+.. ...|.+++++|.+.+||.+... ....|...++........+.. -..|.++++++.+++||++..
T Consensus 187 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~- 263 (391)
T 1l0q_A 187 TVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALS- 263 (391)
T ss_dssp TTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET-
T ss_pred CCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcC-
Confidence 987765555543 4578999999988899998852 257899999875544444443 356889999988889999988
Q ss_pred CCCeEEEEEccCCce
Q psy5792 343 GSNVLESMDYSGGSK 357 (377)
Q Consensus 343 ~~~~i~~~~~~G~~~ 357 (377)
..++|...++..+..
T Consensus 264 ~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 264 FXNTVSVIDTATNTI 278 (391)
T ss_dssp TTTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCcE
Confidence 889999999875443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=133.07 Aligned_cols=243 Identities=10% Similarity=0.041 Sum_probs=160.5
Q ss_pred cCCccccccCCCCeEEEEeCC--CC--cEEEEEcCCcEEEEE-----eCCCCCceEEEEE-ECCeEEEEcCC-----CCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL--SH--SLHYVNIEVKVAKVV-----SMPDAAQVVAAVF-YKGRIIYSDAN-----DGN 80 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~--~~--~I~~~~~dG~~~~i~-----~~~~~~~p~~lav-~~~~ly~td~~-----~~~ 80 (377)
..|.|++++++ +++|++... .+ +|..++ +|+...+- ....+..|.+|++ .+++|||+|.. ..+
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 58999999975 589999753 23 789988 77633221 0134678999999 46899999976 456
Q ss_pred eEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 81 IRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 81 I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
|.+++ .+|+..
T Consensus 95 i~~~d~~tg~~~-------------------------------------------------------------------- 106 (343)
T 2qe8_A 95 LVAWDTLNNQLS-------------------------------------------------------------------- 106 (343)
T ss_dssp EEEEETTTTEEE--------------------------------------------------------------------
T ss_pred EEEEECCCCeEE--------------------------------------------------------------------
Confidence 77776 334322
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc---CCCcEEEEEcCCCCcEEEEeccccCCC-----
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI---DHGTISRTHRDGTGRENIIEYVETGDP----- 231 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~---~~~~I~~~~~~G~~~~~i~~~~~~~~~----- 231 (377)
+.+.+..... .....+.++++|+.++.+|++|. ..+.|.+++++......+........+
T Consensus 107 ---~~~~~~~~~~---------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 107 ---RVIYLPPPIT---------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp ---EEEECCTTTS---------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred ---EEEECChhhc---------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 2222211100 01123567788877789999998 677888888864332222210000000
Q ss_pred --C---------------CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC----CCe--------EEEEeeCCCCCcee
Q psy5792 232 --T---------------PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT----GQY--------RYVLISGGVDQPSA 282 (377)
Q Consensus 232 --~---------------~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~----g~~--------~~~l~~~~~~~P~~ 282 (377)
. ....|.+||+++.++.||+++...++|++++.+ +.. ...+- ....|.|
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~~g~pdg 252 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS--EKPICDG 252 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE--ECCSCSC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc--cCCCCce
Confidence 0 012479999999888999999988899999853 110 01111 2347999
Q ss_pred EEEcCCCCeEEEEecCCCCeEEEEec-CCCCeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCCeE
Q psy5792 283 LAVDPESGYLFWSESGKIPLIARAGL-DGKKQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSNVL 347 (377)
Q Consensus 283 iavdp~~g~lywtd~g~~~~I~r~~l-dG~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~~i 347 (377)
|++|+ .|.||+++++ ..+|.+.+. +|+ ...+... .+.+|.+++++. .++||+++. ..+++
T Consensus 253 ia~d~-~G~l~va~~~-~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~-~g~l~v~~~-~~~~~ 314 (343)
T 2qe8_A 253 ISIDK-DHNIYVGDLA-HSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGS-DGYLYFDCN-QLHHS 314 (343)
T ss_dssp EEECT-TCCEEEEEGG-GTEEEEEETTTTE-EEEEEECGGGSCEEEEEECT-TSCEEEEEC-CGGGS
T ss_pred EEECC-CCCEEEEccC-CCeEEEEECCCCC-EEEEEECCceecCCeeEECC-CCcEEEEeC-ccccc
Confidence 99998 6999999986 689999999 775 3444443 378899999985 588999998 65544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-12 Score=119.96 Aligned_cols=267 Identities=9% Similarity=0.031 Sum_probs=167.6
Q ss_pred CCCCceEEEEE-ECCeEEEEcCC--CCceEEEc-CCCCceEE--Ee-cCCCceeEEeeecCCCCcccCCCcCCCCCCcee
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDAN--DGNIRSIN-LDGSNSTV--LR-NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~--~~~I~~~~-~~g~~~~~--~~-~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~ 128 (377)
.....|.+|++ .+++||+++.. .+.|..++ .+|+...+ +. ....|.++++ +++.+
T Consensus 37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~-spdg~----------------- 98 (347)
T 3hfq_A 37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV-DEARQ----------------- 98 (347)
T ss_dssp EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE-ETTTT-----------------
T ss_pred eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE-CCCCC-----------------
Confidence 44678999999 45669999864 57888888 44432221 11 1222667665 34322
Q ss_pred ccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe--cC--------CCCceEEEEEECCCCE
Q psy5792 129 VLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP--LS--------KVSLAAKVDFHAAEDY 198 (377)
Q Consensus 129 ~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~--~~--------~~~~~~~l~~d~~~~~ 198 (377)
+|+++....+.|..++++.... ...+.. .. ....+.++++++.++
T Consensus 99 ----------------------~l~~~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~- 153 (347)
T 3hfq_A 99 ----------------------LVYSANYHKGTAEVMKIAADGA--LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR- 153 (347)
T ss_dssp ----------------------EEEEEETTTTEEEEEEECTTSC--EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-
T ss_pred ----------------------EEEEEeCCCCEEEEEEeCCCCC--eeecceeecCCCCCCccccCCCceEEEECCCCc-
Confidence 5777775555688887753322 111111 11 123578899999766
Q ss_pred EEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC--CeEEEE--e
Q psy5792 199 IYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG--QYRYVL--I 273 (377)
Q Consensus 199 ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--~~~~~l--~ 273 (377)
+|+++...+.|..++++. .....+... .. ..-..|.++++++.++.||+++...++|.+.+++. ...+.+ +
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~---~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVL-TM---EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEE-EC---CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeE-Ec---CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 999998888998888872 222222110 00 12236899999987777999999889998888874 222111 1
Q ss_pred eCC------CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEE--EecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 274 SGG------VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTIL--AQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 274 ~~~------~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l--~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
... ...|.+++++|...+||+++.+ ...|...+++..+ .+.+ +...-..|.++++++.+++||.++. ..
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-~~ 307 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ-NT 307 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEET-TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET-TT
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCC-CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc-CC
Confidence 111 1458899999988889999875 5777777776322 2222 1211346999999988889999998 77
Q ss_pred CeEEEE--EccCCceEEEEecCCCCCccc
Q psy5792 345 NVLESM--DYSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 345 ~~i~~~--~~~G~~~~~~~~~~~~~~p~~ 371 (377)
+.|... +...+..+.+-....++.|..
T Consensus 308 ~~v~v~~~d~~tg~l~~~~~~~~~p~p~~ 336 (347)
T 3hfq_A 308 DNATLYARDLTSGKLSLLQKDVTVPEGVC 336 (347)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECTTEEE
T ss_pred CcEEEEEEeCCCCeEEecccceecCCCcE
Confidence 877766 444444444433334666643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-13 Score=124.38 Aligned_cols=252 Identities=13% Similarity=0.146 Sum_probs=169.7
Q ss_pred CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCC-CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCC
Q psy5792 46 EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLD-GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNK 121 (377)
Q Consensus 46 dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~ 121 (377)
.+. ...+. .....|.++++ .++.|||++...+.|.+++.+ |+.......... |.++++. ++.
T Consensus 33 ~~~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~-~dg----------- 98 (333)
T 2dg1_A 33 TAEPWLEIS--KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDG----------- 98 (333)
T ss_dssp ECEEEEEEE--SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC-TTS-----------
T ss_pred ccceeEEEe--ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEEC-CCC-----------
Confidence 344 55554 56677899999 577899999988999999954 544443322223 7777652 222
Q ss_pred CCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC----CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCC
Q psy5792 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG----YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED 197 (377)
Q Consensus 122 ~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~----~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~ 197 (377)
.++++.... +.|.+++.++... ...+........+.++++|+ ++
T Consensus 99 -----------------------------~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~i~~d~-~g 146 (333)
T 2dg1_A 99 -----------------------------RLFVCYLGDFKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDS-KG 146 (333)
T ss_dssp -----------------------------CEEEEECTTSSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECT-TS
T ss_pred -----------------------------cEEEEeCCCCCCCceEEEEeCCCCEE--EEEEccCccCCcccceEECC-CC
Confidence 255554322 3488888776644 11221122334688999998 57
Q ss_pred EEEEEEcC------CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc--CCCeE
Q psy5792 198 YIYWVDID------HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL--TGQYR 269 (377)
Q Consensus 198 ~ly~sd~~------~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~--~g~~~ 269 (377)
.+|+++.. .+.|++++.++...+.+.. ....|.++++++.++.||+++...++|.+.++ +|...
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEEEEeec--------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 89998864 4689999887655444433 34569999999876679999988889999999 44432
Q ss_pred EE-----Eee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC-----CCCceEEEEeCCCCEEEE
Q psy5792 270 YV-----LIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-----IMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 270 ~~-----l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~-----~~~P~glalD~~~~~LYw 338 (377)
.. ... .....|.+|++|+ .|.||+++.+ ...|.+.+.+|.....+.... +..|.++++++.+++||+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~-~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYG-QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII 296 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEET-TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred ccccceEEEecCCCCCCCceEECC-CCCEEEEEcC-CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence 21 111 1234799999997 6889999875 578999998876555543321 126899999866679999
Q ss_pred EEeCC-----CCeEEEEEccC
Q psy5792 339 CYSVG-----SNVLESMDYSG 354 (377)
Q Consensus 339 ~d~~~-----~~~i~~~~~~G 354 (377)
+.. . .+.|++++...
T Consensus 297 ~~~-~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 297 CSN-DIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp EEE-CGGGTCCEEEEEEECSS
T ss_pred EeC-ccCCCCCceEEEEeccc
Confidence 988 5 34788887654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=131.61 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=153.9
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEe----CCCCCceEEEEEEC-----CeEEEEcCCC-----Cc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVS----MPDAAQVVAAVFYK-----GRIIYSDAND-----GN 80 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~----~~~~~~p~~lav~~-----~~ly~td~~~-----~~ 80 (377)
+..|.++++++++ +||+++.. ++|.+++ +|+.+.+.. ......|.||++.. ++||+++... ++
T Consensus 30 l~~P~~ia~~pdG-~l~V~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDG-GMLIAERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTS-CEEEEETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCC-eEEEEeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 6789999999864 79999986 9999999 777333321 13467899999965 4999998754 56
Q ss_pred eEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC
Q psy5792 81 IRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY 160 (377)
Q Consensus 81 I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~ 160 (377)
|.+++.++...... ..+
T Consensus 107 v~r~~~~~~~~~~~--------------------------------------------------------~~l------- 123 (352)
T 2ism_A 107 VVRLRHLGERGVLD--------------------------------------------------------RVV------- 123 (352)
T ss_dssp EEEEEECSSCEEEE--------------------------------------------------------EEE-------
T ss_pred EEEEEeCCCCcCce--------------------------------------------------------EEE-------
Confidence 77666332211000 000
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------------CCCcEEEEEcCCC----------
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-------------DHGTISRTHRDGT---------- 217 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-------------~~~~I~~~~~~G~---------- 217 (377)
+..+.... .....+.++++++ +++||+++. ..++|+|++.+|+
T Consensus 124 -~~~~p~~~------------~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 124 -LDGIPARP------------HGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp -EEEECCCT------------TCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred -EEeCCCCC------------CCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 00111000 0112345677777 568998863 2368999999982
Q ss_pred ---CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE--------EEEEEcCCCe--------------EE-E
Q psy5792 218 ---GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV--------IEVARLTGQY--------------RY-V 271 (377)
Q Consensus 218 ---~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~--------I~~~~~~g~~--------------~~-~ 271 (377)
..++.. .++..|.+|++|+.+++||++|...+. |.++...+.+ .. .
T Consensus 190 ~~~~~~i~a--------~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 190 RGARPEVYS--------LGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TTSCTTEEE--------ECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCccEEE--------EcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 334444 367789999999878999999987665 6665543310 11 1
Q ss_pred EeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-------eEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 272 LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-------QTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 272 l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-------~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
........|.|+++ .+|.+|++++. ..+|.++.+++.. ...++. ....|.++++++ .+.||+++.
T Consensus 262 ~~~~~~~ap~G~~~--~~G~l~v~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 262 YFWPQGFPPGNLAF--FRGDLYVAGLR-GQALLRLVLEGERGRWRVLRVETALS-GFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp EECTTCCCEEEEEE--ETTEEEEEETT-TTEEEEEEEEEETTEEEEEEEEEEEE-SSCCEEEEEECT-TSCEEEEEC
T ss_pred EecCCCCCCcceEE--ECCEEEEEECC-CCEEEEEEECCCCcceeecchheecc-cCCCeeEEEECC-CCcEEEEEe
Confidence 11122346899999 58999999985 6899999988654 233443 367899999996 579999997
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-13 Score=124.31 Aligned_cols=243 Identities=10% Similarity=0.121 Sum_probs=167.7
Q ss_pred CcCCccccccCCCCeEEEE-------eCCCCcEEEEEcCCc-EEEEEe---CCCCCceEEEEE-EC-CeEEEEcCCCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGV-------KTLSHSLHYVNIEVK-VAKVVS---MPDAAQVVAAVF-YK-GRIIYSDANDGNI 81 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~-------d~~~~~I~~~~~dG~-~~~i~~---~~~~~~p~~lav-~~-~~ly~td~~~~~I 81 (377)
+..|.++++| .+++|||+ +...+.|.++++++. .+.+.. ......|.++++ .+ ++||+++... .|
T Consensus 17 ~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l 94 (314)
T 1pjx_A 17 IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GL 94 (314)
T ss_dssp CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EE
T ss_pred CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-CE
Confidence 6689999999 45699999 788889999997655 555531 013357999999 44 7899998643 67
Q ss_pred EEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 82 RSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
.+++.+|+........
T Consensus 95 ~~~d~~g~~~~~~~~~---------------------------------------------------------------- 110 (314)
T 1pjx_A 95 LVVQTDGTFEEIAKKD---------------------------------------------------------------- 110 (314)
T ss_dssp EEEETTSCEEECCSBC----------------------------------------------------------------
T ss_pred EEEeCCCCEEEEEecc----------------------------------------------------------------
Confidence 7777444321110000
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC---------------CcEEEEEcCCCCcEEEEecc
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH---------------GTISRTHRDGTGRENIIEYV 226 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~---------------~~I~~~~~~G~~~~~i~~~~ 226 (377)
... .....+.++++|. ++++|+++... +.|++++.+|. .+.+..
T Consensus 111 ------~~~-----------~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~-- 169 (314)
T 1pjx_A 111 ------SEG-----------RRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDT-- 169 (314)
T ss_dssp ------TTS-----------CBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEE--
T ss_pred ------CCC-----------ccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCC-EEEecc--
Confidence 000 0012355666776 56788887654 57888888743 233332
Q ss_pred ccCCCCCCCCcceEEEe----ccCCeEEEEcCCCCEEEEEEcC--CCe--EEEEee--CCC-CCceeEEEcCCCCeEEEE
Q psy5792 227 ETGDPTPVDQFTDIAVD----WIAQNIYWSDPKENVIEVARLT--GQY--RYVLIS--GGV-DQPSALAVDPESGYLFWS 295 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD----~~~~~lYwtd~~~~~I~~~~~~--g~~--~~~l~~--~~~-~~P~~iavdp~~g~lywt 295 (377)
....|.+++++ +.++.||+++...++|.+.+++ |.. ...+.. ... ..|.+|++|+ +|.||++
T Consensus 170 ------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~ 242 (314)
T 1pjx_A 170 ------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVA 242 (314)
T ss_dssp ------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEE
T ss_pred ------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEE
Confidence 45579999999 8766899999988999999876 332 112222 112 5699999997 7899999
Q ss_pred ecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 296 ESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 296 d~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
+.+ ...|.+.+.+ |.....+... ...|.+++++..+++||+++. ..+.|.+++.+.
T Consensus 243 ~~~-~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWG-SSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQR 299 (314)
T ss_dssp EET-TTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEET-TTTEEEEEECSS
T ss_pred EcC-CCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeC-CCCeEEEEeCCC
Confidence 875 5799999988 6655544332 478999999877677999999 888999998873
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-11 Score=115.56 Aligned_cols=245 Identities=8% Similarity=0.046 Sum_probs=173.9
Q ss_pred CCceEEEEE--ECCeEEEEcCC------CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCcee
Q psy5792 58 AAQVVAAVF--YKGRIIYSDAN------DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128 (377)
Q Consensus 58 ~~~p~~lav--~~~~ly~td~~------~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~ 128 (377)
...|.++++ .+++||+++.. .+.|..++ .+++....+.....|.++.+ +++.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-s~dg------------------ 100 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATI-NNTT------------------ 100 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEE-ETTT------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEE-CCCC------------------
Confidence 456888998 45689999976 56899999 66766666554333666665 2322
Q ss_pred ccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC--------ceEEEEEECCCCEEE
Q psy5792 129 VLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS--------LAAKVDFHAAEDYIY 200 (377)
Q Consensus 129 ~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~d~~~~~ly 200 (377)
..++++....+.|..+++..... ....+..... .+.++++++.++++|
T Consensus 101 ---------------------~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 156 (353)
T 3vgz_A 101 ---------------------QTLWFGNTVNSAVTAIDAKTGEV---KGRLVLDDRKRTEEVRPLQPRELVADDATNTVY 156 (353)
T ss_dssp ---------------------TEEEEEETTTTEEEEEETTTCCE---EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEE
T ss_pred ---------------------CEEEEEecCCCEEEEEeCCCCee---EEEEecCCCccccccCCCCCceEEECCCCCEEE
Confidence 24777776656788888876543 1223332221 378999999999999
Q ss_pred EEEc-CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC----
Q psy5792 201 WVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG---- 275 (377)
Q Consensus 201 ~sd~-~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~---- 275 (377)
+++. ..+.|+.+++........+. ..-..|.++++++.++.||+++. .+.|.+.++........+..
T Consensus 157 ~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 228 (353)
T 3vgz_A 157 ISGIGKESVIWVVDGGNIKLKTAIQ-------NTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDG 228 (353)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEEC-------CCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSS
T ss_pred EEecCCCceEEEEcCCCCceEEEec-------CCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCC
Confidence 9985 46789999987543332222 12335999999998888999987 57899999876654433332
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 276 GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 276 ~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
....|.+++++|.+++||+++.+ ...|...++........+. ...|.++++++.+++||+++. ..+.|..++...+
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSK-AAEVLVVDTRNGNILAKVA--APESLAVLFNPARNEAYVTHR-QAGKVSVIDAKSY 304 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESS-SSEEEEEETTTCCEEEEEE--CSSCCCEEEETTTTEEEEEET-TTTEEEEEETTTT
T ss_pred CCcccceEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEEEE--cCCCceEEECCCCCEEEEEEC-CCCeEEEEECCCC
Confidence 23457889999998999999874 5899999986544433333 456789999988889999998 8899999998755
Q ss_pred ce
Q psy5792 356 SK 357 (377)
Q Consensus 356 ~~ 357 (377)
..
T Consensus 305 ~~ 306 (353)
T 3vgz_A 305 KV 306 (353)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-13 Score=126.53 Aligned_cols=252 Identities=13% Similarity=0.171 Sum_probs=168.9
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEE-----ecCCC-ceeEEeeecCCCCcccCCCcCC
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVL-----RNNAG-ISDFILFSVNSGYDIMGIKYNK 121 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~-----~~~~~-p~~i~v~~~~~~~~~~~~~C~~ 121 (377)
.+++. ..+..|++|++ .+++||+++.. ++|++++.+|+ ..+. ..... |.||++ +++-.
T Consensus 21 ~~~va--~~l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~-~pdf~---------- 85 (354)
T 3a9g_A 21 ISEVA--SDLEVPWSIAPLGGGRYLVTERP-GRLVLISPSGK-KLVASFDVANVGEAGLLGLAL-HPEFP---------- 85 (354)
T ss_dssp EEEEE--CSCSCEEEEEEEETTEEEEEETT-TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEE-CTTTT----------
T ss_pred EEEEe--CCCCCCeEEEEcCCCeEEEEeCC-CEEEEEeCCCc-eEeeccceeecCCCceeeEEe-CCCCC----------
Confidence 56665 67899999999 67899999987 89999987776 3322 12223 888886 44310
Q ss_pred CCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC---C----CeEEEEEcCCCCcee--eEEE---EecCCCCceEE
Q psy5792 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS---G----YDIMGIKYNKNESKV--TQVL---GPLSKVSLAAK 189 (377)
Q Consensus 122 ~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~---~----~~I~~~~l~~~~~~~--~~~~---~~~~~~~~~~~ 189 (377)
.+..|+++... . ..|.++++++....+ .+.+ .+......+.+
T Consensus 86 --------------------------~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~ 139 (354)
T 3a9g_A 86 --------------------------KKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGR 139 (354)
T ss_dssp --------------------------TSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCC
T ss_pred --------------------------cCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCce
Confidence 01246555431 1 348899887652111 1122 23223345778
Q ss_pred EEEECCCCEEEEEEcC-------------CCcEEEEEcCCC--------CcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 190 VDFHAAEDYIYWVDID-------------HGTISRTHRDGT--------GRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~-------------~~~I~~~~~~G~--------~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
|++++ +++||++.-. .++|+|++.+|+ ..++.. .++..|.+|++|+.+++
T Consensus 140 l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a--------~G~rnp~Gla~d~~~g~ 210 (354)
T 3a9g_A 140 IRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS--------YGHRNPQGIDWHRASGV 210 (354)
T ss_dssp EEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE--------ECCSCCCEEEECTTTCC
T ss_pred EEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE--------EccCCcceEEEeCCCCC
Confidence 99998 6689999632 368999999987 334444 47888999999987899
Q ss_pred EEEEcCCCC---EEEEEEcCCCe--------------EEEEee--CCCCCceeEEE-------cCCCCeEEEEecCCCCe
Q psy5792 249 IYWSDPKEN---VIEVARLTGQY--------------RYVLIS--GGVDQPSALAV-------DPESGYLFWSESGKIPL 302 (377)
Q Consensus 249 lYwtd~~~~---~I~~~~~~g~~--------------~~~l~~--~~~~~P~~iav-------dp~~g~lywtd~g~~~~ 302 (377)
||++|...+ .|.++...+.+ ...+.. .....|.|+++ + .+|.+|+++.. ..+
T Consensus 211 l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-~~G~l~v~~~~-~~~ 288 (354)
T 3a9g_A 211 MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-LRGWLLIACLR-GSM 288 (354)
T ss_dssp EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-GTTEEEEEETT-TTE
T ss_pred EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-cCCcEEEEEcC-CCE
Confidence 999998764 46665543310 111111 12356999999 4 57899999985 689
Q ss_pred EEEEecCCCCe----EEEEecCCCCceEEEEeCCCCEEEEEEeCC-CC---------eEEEEEccC
Q psy5792 303 IARAGLDGKKQ----TILAQEIIMPIKDITLDRKNKRVYWCYSVG-SN---------VLESMDYSG 354 (377)
Q Consensus 303 I~r~~ldG~~~----~~l~~~~~~~P~glalD~~~~~LYw~d~~~-~~---------~i~~~~~~G 354 (377)
|.++.+++... ..++......|.++++++ .+.||+++. . .+ +|+++...|
T Consensus 289 v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~-~~~G~g~~~~~~g~i~ri~~~g 352 (354)
T 3a9g_A 289 LAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS-NRDGRGSLRAGDDKILKIVSEQ 352 (354)
T ss_dssp EEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC-TTSSSSCCCTTCSCEEEEEETT
T ss_pred EEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe-CCCCCcCCCCCCCEEEEEecCC
Confidence 99999986431 233333356899999986 568999986 4 33 888887764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-13 Score=125.48 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=122.5
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC---------
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--------- 255 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--------- 255 (377)
..|.++++|..++.||++|.. +.|.++++++...+.+...... ..+..|.+|++|+..++||++|..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~---~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDG---VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEETT---EECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCC---CcccccceEEEecCCCEEEEECCcccccccccc
Confidence 358899999767899999975 4588888875444554421000 124569999999646799999865
Q ss_pred --------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC---CeEEEEecCCCCc
Q psy5792 256 --------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK---KQTILAQEIIMPI 324 (377)
Q Consensus 256 --------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~---~~~~l~~~~~~~P 324 (377)
.++|.+.+.++...+.+.. .+..|.+|+++|....||++|.+ ..+|.+.++++. ..+.+... .. |
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~-~~~I~~~~~~~~~~~~~~~~~~~-~g-P 231 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFL-SHQIVKYWLEGPKKGTAEVLVKI-PN-P 231 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGG-GTEEEEEESSSTTTTCEEEEEEC-SS-E
T ss_pred eehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCC-CCeEEEEECCCCcCCccceEEeC-CC-C
Confidence 2689999998766555544 47889999999977789999985 689999999873 33444432 23 9
Q ss_pred eEEEEeCCCCEEEEEEeCC----------CCeEEEEEccCCceEEE
Q psy5792 325 KDITLDRKNKRVYWCYSVG----------SNVLESMDYSGGSKMQL 360 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~----------~~~i~~~~~~G~~~~~~ 360 (377)
.||++|. +++||+++. . .++|.+++.+|.-.+.+
T Consensus 232 ~gi~~d~-~G~l~va~~-~~~~~~~~~~~~~~v~~~d~~G~~~~~~ 275 (322)
T 2fp8_A 232 GNIKRNA-DGHFWVSSS-EELDGNMHGRVDPKGIKFDEFGNILEVI 275 (322)
T ss_dssp EEEEECT-TSCEEEEEE-EETTSSTTSCEEEEEEEECTTSCEEEEE
T ss_pred CCeEECC-CCCEEEEec-CcccccccCCCccEEEEECCCCCEEEEE
Confidence 9999996 567999998 6 57899999986544444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-12 Score=119.33 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=159.5
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTV 93 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~ 93 (377)
+..+.|.+.++++++|||++...+.|.+.+.+|..+++. .....|.++++ .+++||+++...+.|.+++.+|+....
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~ 121 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLL 121 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEE
Confidence 457889999998888999999999999999987744443 34567999999 577899999888899999977764333
Q ss_pred EecCC-----CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC-----------
Q psy5792 94 LRNNA-----GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN----------- 157 (377)
Q Consensus 94 ~~~~~-----~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~----------- 157 (377)
..... .|.++.+. ++ ..+++++.
T Consensus 122 ~~~~~~~~~~~~~~i~~d-~d----------------------------------------G~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVA-RD----------------------------------------GAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp ECEETTEECSCCCCEEEC-TT----------------------------------------SCEEEECCSGGGSCGGGSC
T ss_pred EeccCCCccCCCCCEEEC-CC----------------------------------------CCEEEeCcCCCcccccccc
Confidence 22110 13344431 11 12444321
Q ss_pred ------CCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC-----CcEEEEEcCCCC---cEEEE
Q psy5792 158 ------SGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH-----GTISRTHRDGTG---RENII 223 (377)
Q Consensus 158 ------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~-----~~I~~~~~~G~~---~~~i~ 223 (377)
..+.|.+++.+.... ..+. ....|.++++++.++.||+++... +.|+++++++.. .+.+.
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~---~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 234 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPL---QRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCC---EEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred ccccccCCCeEEEEcCCCCcE---EEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence 112377777654433 1221 456789999999888999999763 789999887532 22333
Q ss_pred eccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 224 EYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 224 ~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
. .....|.+|++|. .++||++. .+.|.+.+++|+....+... ..|..+++.+..+.||++.. ..|
T Consensus 235 ~-------~~~~~pdgi~~d~-~G~lwv~~--~~gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~---~~l 299 (305)
T 3dr2_A 235 S-------VPDGLPDGFCVDR-GGWLWSSS--GTGVCVFDSDGQLLGHIPTP--GTASNCTFDQAQQRLFITGG---PCL 299 (305)
T ss_dssp C-------CSSSCCCSEEECT-TSCEEECC--SSEEEEECTTSCEEEEEECS--SCCCEEEECTTSCEEEEEET---TEE
T ss_pred E-------CCCCCCCeEEECC-CCCEEEec--CCcEEEECCCCCEEEEEECC--CceeEEEEeCCCCEEEEEcC---CeE
Confidence 3 2345699999995 67788877 34699999999876655433 25999999987788999874 478
Q ss_pred EEEec
Q psy5792 304 ARAGL 308 (377)
Q Consensus 304 ~r~~l 308 (377)
++.++
T Consensus 300 ~~~~~ 304 (305)
T 3dr2_A 300 WMLPL 304 (305)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-11 Score=111.29 Aligned_cols=277 Identities=10% Similarity=0.067 Sum_probs=180.5
Q ss_pred CCeEEEEeCCCCcEEEEEcC--CcEEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC---CCCceEE--EecC
Q psy5792 27 GPFVYGVKTLSHSLHYVNIE--VKVAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL---DGSNSTV--LRNN 97 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~d--G~~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~---~g~~~~~--~~~~ 97 (377)
++.||+++...+.|...+++ |..+.+........|.++++ .+.+||+++...+.|...+. +|+...+ +...
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 45789998888999999986 54222211144567888998 56679999987788887662 3443222 2211
Q ss_pred CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE
Q psy5792 98 AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV 177 (377)
Q Consensus 98 ~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~ 177 (377)
..|.++++ +++. .+++++....+.|..++++.... ...
T Consensus 84 ~~~~~~~~-s~dg---------------------------------------~~l~~~~~~~~~i~~~d~~~~~~--~~~ 121 (343)
T 1ri6_A 84 GSLTHIST-DHQG---------------------------------------QFVFVGSYNAGNVSVTRLEDGLP--VGV 121 (343)
T ss_dssp SCCSEEEE-CTTS---------------------------------------SEEEEEETTTTEEEEEEEETTEE--EEE
T ss_pred CCCcEEEE-cCCC---------------------------------------CEEEEEecCCCeEEEEECCCCcc--ccc
Confidence 12555543 2222 25667766555688887741111 123
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC-CCcEEE----EeccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG-TGRENI----IEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G-~~~~~i----~~~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
+..+.....+.++++++.++.||+++...+.|..++++. .....+ ... ..-..|.++++++.++.||++
T Consensus 122 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~pdg~~l~~~ 195 (343)
T 1ri6_A 122 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------VEGAGPRHMVFHPNEQYAYCV 195 (343)
T ss_dssp EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------STTCCEEEEEECTTSSEEEEE
T ss_pred cccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc------CCCCCcceEEECCCCCEEEEE
Confidence 333445566889999998889999997788999988864 222221 110 122468999999888889999
Q ss_pred cCCCCEEEEEEcCC---Ce--EEEEee--C---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC--CCCeEEEEe-c
Q psy5792 253 DPKENVIEVARLTG---QY--RYVLIS--G---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--GKKQTILAQ-E 319 (377)
Q Consensus 253 d~~~~~I~~~~~~g---~~--~~~l~~--~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--G~~~~~l~~-~ 319 (377)
+...++|.+.+++. .. ...+.. . ....|.+++++|...+||++..+ ...|...+++ +...+.+.. .
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-ASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTSCCEEEEEEEE
T ss_pred eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-CCEEEEEEEcCCCCceEEeeeec
Confidence 98889999999864 22 112211 1 13457789999988899999864 5778888776 433333321 1
Q ss_pred CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 320 IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 320 ~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.-..|.++++++.+++||.+.. ..+.|...+++
T Consensus 275 ~~~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d 307 (343)
T 1ri6_A 275 TETQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIV 307 (343)
T ss_dssp CSSSCCCEEECTTSSEEEEECT-TTCEEEEEEEE
T ss_pred CCCccceEEECCCCCEEEEecC-CCCeEEEEEEc
Confidence 1245999999988889999997 77777666444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-12 Score=118.56 Aligned_cols=225 Identities=10% Similarity=0.088 Sum_probs=155.8
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC-CCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL-DGSNS 91 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~g~~~ 91 (377)
...+.|.+.|+.+++|||+|...++|+++++++. .+.+. ....|.++++ .++.+|++. .+.|.+++. +|+..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT---MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE---CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe---CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEE
Confidence 4577888999988999999999999999999988 65553 3457899999 466788876 468999994 45433
Q ss_pred EEEecCC----C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe----------
Q psy5792 92 TVLRNNA----G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV---------- 156 (377)
Q Consensus 92 ~~~~~~~----~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~---------- 156 (377)
.+..... . |.++++ +++ ..++++.
T Consensus 87 ~~~~~~~~~~~~~~~di~~-d~d----------------------------------------G~l~~~~~~~~~~~~~~ 125 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKV-DPA----------------------------------------GRYFAGTMAEETAPAVL 125 (297)
T ss_dssp EEEECCTTCSSEEEEEEEE-CTT----------------------------------------SCEEEEEEECCSBTTBC
T ss_pred EEEecCCCCCCCCCCCEEE-CCC----------------------------------------CCEEEecCCcccccccc
Confidence 3322111 1 444444 221 1244443
Q ss_pred -CCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC---CC--CcEEEEeccccCC
Q psy5792 157 -NSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD---GT--GRENIIEYVETGD 230 (377)
Q Consensus 157 -~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~---G~--~~~~i~~~~~~~~ 230 (377)
...+.|.+++.++.. ..+ ......|.++++++.++.|||++...++|++++++ |. ..+.+...
T Consensus 126 ~~~~~~l~~~d~~g~~----~~~--~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~----- 194 (297)
T 3g4e_A 126 ERHQGALYSLFPDHHV----KKY--FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL----- 194 (297)
T ss_dssp CTTCEEEEEECTTSCE----EEE--EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-----
T ss_pred cCCCcEEEEEECCCCE----EEE--eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-----
Confidence 122347777665431 111 23456789999999888999999988999999874 32 12333320
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEc-CCCCeEEEEecC
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVD-PESGYLFWSESG 298 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavd-p~~g~lywtd~g 298 (377)
......|.+|++|. .++||+++...++|.+.+++ |+....+ ......|.++++. |..+.||+|...
T Consensus 195 ~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i-~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 195 EKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTV-KLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEE-ECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEE-ECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 01224699999996 57999999888999999998 7765544 3345679999998 777899999853
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-12 Score=115.81 Aligned_cols=240 Identities=15% Similarity=0.178 Sum_probs=164.0
Q ss_pred CCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCC
Q psy5792 46 EVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNK 121 (377)
Q Consensus 46 dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~ 121 (377)
.+. .+++. .....+.|.++ .+++|||+|..++.|++++.+|+. +++..... |.++++ +++.
T Consensus 33 ~~~~~~~l~--~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~-~~~~~~~~~~~gl~~-d~dG----------- 97 (305)
T 3dr2_A 33 GDARLLTLY--DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTV-DVLLDATAFTNGNAV-DAQQ----------- 97 (305)
T ss_dssp TTCCCEEEE--CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCE-EEEEESCSCEEEEEE-CTTS-----------
T ss_pred CCCceEEEe--cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCE-EEEeCCCCccceeeE-CCCC-----------
Confidence 455 77776 67888999998 345799999999999999976653 34433333 777765 2222
Q ss_pred CCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe-cC--CCCceEEEEEECCCCE
Q psy5792 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP-LS--KVSLAAKVDFHAAEDY 198 (377)
Q Consensus 122 ~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~-~~--~~~~~~~l~~d~~~~~ 198 (377)
.|+++....+.|.+++.++. . ..+.. .. ....|..+++|. ++.
T Consensus 98 -----------------------------~l~v~~~~~~~v~~~~~~g~-~---~~~~~~~~~~~~~~~~~i~~d~-dG~ 143 (305)
T 3dr2_A 98 -----------------------------RLVHCEHGRRAITRSDADGQ-A---HLLVGRYAGKRLNSPNDLIVAR-DGA 143 (305)
T ss_dssp -----------------------------CEEEEETTTTEEEEECTTSC-E---EEEECEETTEECSCCCCEEECT-TSC
T ss_pred -----------------------------CEEEEECCCCEEEEECCCCC-E---EEEEeccCCCccCCCCCEEECC-CCC
Confidence 25566544335888877643 2 12211 11 123467788997 678
Q ss_pred EEEEEcC-----------------CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-----
Q psy5792 199 IYWVDID-----------------HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE----- 256 (377)
Q Consensus 199 ly~sd~~-----------------~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~----- 256 (377)
||++|.. .+.|++++.++...+.+.. +..|.+|++++.++.||+++...
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD---------LDHPNGLAFSPDEQTLYVSQTPEQGHGS 214 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---------ESSEEEEEECTTSSEEEEEECCC---CC
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---------CCCCcceEEcCCCCEEEEEecCCcCCCC
Confidence 9998741 3579999885433333322 34699999998878899999873
Q ss_pred CEEEEEEcCCCe---EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 257 NVIEVARLTGQY---RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 257 ~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
++|.+.++++.. .+++.......|.+|++|+ .|.||++.. ..|.+.+.+|.....+... ..|..++++...
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~~---~gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~ 288 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSSG---TGVCVFDSDGQLLGHIPTP--GTASNCTFDQAQ 288 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECCS---SEEEEECTTSCEEEEEECS--SCCCEEEECTTS
T ss_pred CEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEecC---CcEEEECCCCCEEEEEECC--CceeEEEEeCCC
Confidence 799999987643 3344443456799999997 677888873 4699999988766665543 268899998666
Q ss_pred CEEEEEEeCCCCeEEEEEc
Q psy5792 334 KRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~ 352 (377)
++||++.. +.++++++
T Consensus 289 ~~L~it~~---~~l~~~~~ 304 (305)
T 3dr2_A 289 QRLFITGG---PCLWMLPL 304 (305)
T ss_dssp CEEEEEET---TEEEEEEC
T ss_pred CEEEEEcC---CeEEEEEC
Confidence 78888766 46777654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-10 Score=112.82 Aligned_cols=283 Identities=13% Similarity=0.057 Sum_probs=203.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC----CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM----PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~----~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~ 87 (377)
...|.++++++ ++++|++....+.|...|+++. ....... .....+.++++ .++.+|++....+.|...+ .+
T Consensus 122 ~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 122 GFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 35678899998 7899999888889999999866 4443211 22335677888 6789999998889999999 56
Q ss_pred CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 88 GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 88 g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
++....+..... +.++++ +++. ..++++....+.|+.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~---------------------------------------~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLY-DPIR---------------------------------------DLVYCSNWISEDISVID 240 (433)
T ss_dssp CCEEEEEECSSSSEEEEEE-ETTT---------------------------------------TEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCCeeEEEE-cCCC---------------------------------------CEEEEEecCCCcEEEEE
Confidence 666555553333 666654 3322 24666765556799998
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-------DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-------~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ 239 (377)
+.... .+..+.....+.++++++.++.|+.+.. ..+.|+..++.......... ....|.+
T Consensus 241 ~~~~~-----~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~~ 307 (433)
T 3bws_A 241 RKTKL-----EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--------PPGNKRH 307 (433)
T ss_dssp TTTTE-----EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--------EEECEEE
T ss_pred CCCCc-----EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--------CCCCcce
Confidence 87542 2333444556899999998889998875 35688899987543322222 1236889
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCC-------------CeEEEE
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI-------------PLIARA 306 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~-------------~~I~r~ 306 (377)
+++++.++.||++....++|.+.+++.......+. ....|.+++++|...+||.+..+.. +.|+..
T Consensus 308 ~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~ 386 (433)
T 3bws_A 308 IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386 (433)
T ss_dssp EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence 99998777899998888999999998765544444 3567999999998888999886421 389999
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
++........+.. -..|.++++++.++.||.+.. ..+.|...++++
T Consensus 387 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~d~~i~v~~~~~ 432 (433)
T 3bws_A 387 DTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF-LDHQIRVYRRDG 432 (433)
T ss_dssp ETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET-TTTEEEEEEETT
T ss_pred ECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC-CCCeEEEEEecC
Confidence 8865444444443 467999999988889998887 788888877763
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-11 Score=111.12 Aligned_cols=212 Identities=9% Similarity=0.103 Sum_probs=147.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc--CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN--LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~--~~g~~~ 91 (377)
+.+.|++.|+++++||.+....+.|..+|++|. .+++- ..+..++.||++ .++.+++++-..+++..++ .+++ .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~-l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP-LDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-V 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE-CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe-cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-e
Confidence 579999999999999998888999999999999 77663 356689999999 5667778887778887776 2221 1
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.+ +..+.+.-..
T Consensus 105 ~~--------------------------------------------------------------------~~~~~~~~~~ 116 (255)
T 3qqz_A 105 KI--------------------------------------------------------------------LKKIKIPLQE 116 (255)
T ss_dssp EE--------------------------------------------------------------------EEEEECCCSS
T ss_pred ee--------------------------------------------------------------------eeeecccccc
Confidence 11 1111111000
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC-cEEEEE--cCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG-TISRTH--RDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~-~I~~~~--~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
........|+++|+.+++||.+..... .|+.++ +.+... .+...........+..+.+|++|+.+++
T Consensus 117 ---------~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l-~i~~~~~~~~~~~~~d~S~l~~dp~tg~ 186 (255)
T 3qqz_A 117 ---------SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL-HISKDKALQRQFTLDDVSGAEFNQQKNT 186 (255)
T ss_dssp ---------CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC-EEEECHHHHHTCCSSCCCEEEEETTTTE
T ss_pred ---------ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce-eeecchhhccccccCCceeEEEcCCCCe
Confidence 011223689999999999999876554 788887 122122 2222100001123557999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEeeC--------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLISG--------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~~--------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
||+.....+++..++++|..+..+--. .+.+|.|||+|+ +|.||++.. ...++++.-++
T Consensus 187 lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE--~n~~y~f~~~~ 253 (255)
T 3qqz_A 187 LLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE--PNRFYRFTPQS 253 (255)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEET--TTEEEEEEC--
T ss_pred EEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcC--CceEEEEEecC
Confidence 999999999999999999865544222 257999999998 689999975 35888886544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-11 Score=113.05 Aligned_cols=257 Identities=12% Similarity=0.127 Sum_probs=168.3
Q ss_pred CcCCccccccCCCCeEEEEeC---CCCcEEEE--EcC-CcEEEEEe-CCCCCceEEEEEECCeEEEEcCCCCceEEEcC-
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---LSHSLHYV--NIE-VKVAKVVS-MPDAAQVVAAVFYKGRIIYSDANDGNIRSINL- 86 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---~~~~I~~~--~~d-G~~~~i~~-~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~- 86 (377)
...|.++++++++++||.+.. ..+.|... +.+ |..+.+.. ......|..+++.+++||+++...+.|..++.
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~ 128 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIG 128 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeC
Confidence 468999999999999999988 35677654 555 43433321 13456899999977789999988888877772
Q ss_pred -CCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 87 -DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 87 -~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+|....+ ...+
T Consensus 129 ~~g~~~~~--------------------------------------------------------------------~~~~ 140 (361)
T 3scy_A 129 QDGALLPA--------------------------------------------------------------------SDVI 140 (361)
T ss_dssp TTSCBCSC--------------------------------------------------------------------SEEE
T ss_pred CCCcCccc--------------------------------------------------------------------ceeE
Confidence 2211000 0000
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-------------EEEEeccccCCCC
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-------------ENIIEYVETGDPT 232 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-------------~~i~~~~~~~~~~ 232 (377)
...+... . ..-....++.++++++.+++||+++...+.|...+++.... ..... .
T Consensus 141 ~~~g~~~--~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-------~ 208 (361)
T 3scy_A 141 EFKGSGP--D---KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-------A 208 (361)
T ss_dssp ECCCCCS--C---TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-------C
T ss_pred EccCCCC--C---ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-------C
Confidence 0011000 0 00012235788899998889999998888888887764321 11222 2
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEe--e---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI--S---GGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~--~---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
.-..|.++++++.++.||+++...++|.+.+++....+.+. . .....|.+|+++|...+||+++.+....|...+
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 33469999999988889999988899999998754432221 1 124568899999988899999874135676666
Q ss_pred cC--CCCeEEE--EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 308 LD--GKKQTIL--AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 308 ld--G~~~~~l--~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
++ ....+.+ +.. -..|.++++++.+++||.+.. ..+.|....++
T Consensus 289 ~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d 336 (361)
T 3scy_A 289 VDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR-DTNVIQIFERD 336 (361)
T ss_dssp ECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET-TTTEEEEEEEC
T ss_pred EcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEEC-CCCCEEEEEEE
Confidence 65 2222222 122 247999999988889999998 77877774444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-11 Score=109.25 Aligned_cols=279 Identities=13% Similarity=0.052 Sum_probs=173.3
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcC--Cc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC-CC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE--VK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL-DG 88 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d--G~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~-~g 88 (377)
...|.++++++.+++||++....+.|...+++ +. .+.+........|.++++ .+.+||+++...+.|..++. +|
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence 35799999999999999999887899988776 44 433321122337899999 45579999988888888883 44
Q ss_pred CceEEEe---cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 89 SNSTVLR---NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 89 ~~~~~~~---~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
...+.+. ....|.++.+ +++ ..+++++....+.|..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~-s~d---------------------------------------g~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 117 LPVGVVDVVEGLDGCHSANI-SPD---------------------------------------NRTLWVPALKQDRICLF 156 (343)
T ss_dssp EEEEEEEEECCCTTBCCCEE-CTT---------------------------------------SSEEEEEEGGGTEEEEE
T ss_pred ccccccccccCCCCceEEEE-CCC---------------------------------------CCEEEEecCCCCEEEEE
Confidence 3322221 1111333332 121 12566666444568888
Q ss_pred EcCCCCceeeEE---EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC--CCcEEEEecc-ccCCCCCCCCcce
Q psy5792 166 KYNKNESKVTQV---LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG--TGRENIIEYV-ETGDPTPVDQFTD 239 (377)
Q Consensus 166 ~l~~~~~~~~~~---~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G--~~~~~i~~~~-~~~~~~~~~~p~~ 239 (377)
++..... .... .........+.++++++.++.||+++...+.|..++++. ...+.+.... ..........|.+
T Consensus 157 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 157 TVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp EECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EecCCCc-eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 8875222 0111 223334457889999998889999998888999999863 2221111100 0000011335778
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE--ecCCCCe
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARA--GLDGKKQ 313 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~--~ldG~~~ 313 (377)
+++++.++.||+++...+.|.+.+++ +...+.+ +... ..|.+++++|...+||++... ...|... +.+....
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~-~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQK-SHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTT-TCEEEEEEEETTTTEE
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCC-CCeEEEEEEcCCCcee
Confidence 99998888999999888999999987 3322222 2322 349999999988889999854 3555555 4433323
Q ss_pred EEEEecC-CCCceEEEEeCCCCEE
Q psy5792 314 TILAQEI-IMPIKDITLDRKNKRV 336 (377)
Q Consensus 314 ~~l~~~~-~~~P~glalD~~~~~L 336 (377)
+.+..-. -..|.+++++...+++
T Consensus 314 ~~~~~~~~g~~p~~i~~~~~~~~~ 337 (343)
T 1ri6_A 314 HEKGRYAVGQGPMWVVVNAHEGGS 337 (343)
T ss_dssp EEEEEEECSSSCCEEEEEEEC---
T ss_pred eEccccccCCCCeeEEEEcccCCc
Confidence 3332211 2679999998765543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-11 Score=111.27 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=164.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCC----CceEEEcCCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDAND----GNIRSINLDG 88 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~----~~I~~~~~~g 88 (377)
+..|.++++|+. ++|||++...+.|.++++++. .+.+.. .....|.+|++ .++++|+++... +.|.+++.++
T Consensus 44 ~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 44 GLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 356889999965 569999999999999999877 555531 34567999999 577899998766 6899999555
Q ss_pred CceE-EEecC--C-CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC------
Q psy5792 89 SNST-VLRNN--A-GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS------ 158 (377)
Q Consensus 89 ~~~~-~~~~~--~-~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~------ 158 (377)
.... ++... . .|.++.+ +++. .++++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~-d~~g----------------------------------------~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVF-DSKG----------------------------------------GFYFTDFRGYSTNP 160 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEE-CTTS----------------------------------------CEEEEECCCBTTBC
T ss_pred CEEEEEEccCccCCcccceEE-CCCC----------------------------------------CEEEEeccccccCC
Confidence 4433 43311 1 1555554 2221 25555432
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEeccccCCCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYVETGDPTPVDQ 236 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~~~~~~~~~~~ 236 (377)
.+.|.+++.++... ..+. .....+.++++++.++.||+++...+.|++++++ |.....+....... ..+...
T Consensus 161 ~~~l~~~~~~~~~~---~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-~~~~~~ 234 (333)
T 2dg1_A 161 LGGVYYVSPDFRTV---TPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-FTGHEG 234 (333)
T ss_dssp CEEEEEECTTSCCE---EEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-CCSSSE
T ss_pred CceEEEEeCCCCEE---EEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe-cCCCCC
Confidence 23477777665433 1111 2334688999998778899999888899999984 43322211000000 012246
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-----CCCceeEEEcCCCCeEEEEecCC----CCeEEEEe
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-----VDQPSALAVDPESGYLFWSESGK----IPLIARAG 307 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-----~~~P~~iavdp~~g~lywtd~g~----~~~I~r~~ 307 (377)
|.+|++|. .++||+++...++|.+.+++|+....+-... +..|.+++++|..+.||++.... ...|++++
T Consensus 235 ~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 235 PDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp EEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 99999996 5789999888889999999887655553221 12699999998767999987531 24677777
Q ss_pred cCCCC
Q psy5792 308 LDGKK 312 (377)
Q Consensus 308 ldG~~ 312 (377)
.+..+
T Consensus 314 ~~~~g 318 (333)
T 2dg1_A 314 GFAKG 318 (333)
T ss_dssp CSSCB
T ss_pred cccCc
Confidence 66443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=121.26 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=161.4
Q ss_pred CCc-EEEEEeCCCCCceEEEEE-ECCe-EEEEcCCCCceEEEcCCCCceEEE-------ecCCC-ceeEEeeecCCCCcc
Q psy5792 46 EVK-VAKVVSMPDAAQVVAAVF-YKGR-IIYSDANDGNIRSINLDGSNSTVL-------RNNAG-ISDFILFSVNSGYDI 114 (377)
Q Consensus 46 dG~-~~~i~~~~~~~~p~~lav-~~~~-ly~td~~~~~I~~~~~~g~~~~~~-------~~~~~-p~~i~v~~~~~~~~~ 114 (377)
+|- .+++. ..+.+|++|++ -+++ ||+++.. ++|++++.+|...+.+ ..... +.+|++ +|+-.
T Consensus 6 ~g~~~~~va--~~l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~-~pdf~--- 78 (353)
T 2g8s_A 6 ATVNVEVLQ--DKLDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVL-APDFA--- 78 (353)
T ss_dssp CCSEEEEEE--EEESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEE-CTTHH---
T ss_pred CCcEEEEEE--CCCCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEE-CCCCC---
Confidence 454 56665 57889999999 5667 9999974 7899998666432211 11222 666665 33200
Q ss_pred cCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-------CCeEEEEEcCCCCcee--eEEEEe-cC--
Q psy5792 115 MGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS-------GYDIMGIKYNKNESKV--TQVLGP-LS-- 182 (377)
Q Consensus 115 ~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~-------~~~I~~~~l~~~~~~~--~~~~~~-~~-- 182 (377)
.+..|+++... ...|.++.+++...++ .+.++. +.
T Consensus 79 ---------------------------------~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~ 125 (353)
T 2g8s_A 79 ---------------------------------QSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL 125 (353)
T ss_dssp ---------------------------------HHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCC
T ss_pred ---------------------------------CCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCC
Confidence 01235554321 1248888876542211 122221 11
Q ss_pred --CCCceEEEEEECCCCEEEEEEcC-------------CCcEEEEEcCCC-------------CcEEEEeccccCCCCCC
Q psy5792 183 --KVSLAAKVDFHAAEDYIYWVDID-------------HGTISRTHRDGT-------------GRENIIEYVETGDPTPV 234 (377)
Q Consensus 183 --~~~~~~~l~~d~~~~~ly~sd~~-------------~~~I~~~~~~G~-------------~~~~i~~~~~~~~~~~~ 234 (377)
....+.+|++++ +++||++.-. .++|+|++.+|+ ..++.. .++
T Consensus 126 ~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a--------~G~ 196 (353)
T 2g8s_A 126 STGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS--------YGI 196 (353)
T ss_dssp BSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE--------ECC
T ss_pred CCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE--------EcC
Confidence 223467899998 6799999632 368999999987 334443 377
Q ss_pred CCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCCe---------------------------E-EEEeeCCCCCceeE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQY---------------------------R-YVLISGGVDQPSAL 283 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~~---------------------------~-~~l~~~~~~~P~~i 283 (377)
..|.+|++|+.++.||++|.... .|.++...+.+ . ..........|.++
T Consensus 197 rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~ 276 (353)
T 2g8s_A 197 RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGM 276 (353)
T ss_dssp SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEE
T ss_pred cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCccee
Confidence 78999999987899999988643 55554332221 0 00111112368899
Q ss_pred EEcC------CCCeEEEEecCCCCeEEEEecCCCCe---EEEEecCCCCceEEEEeCCCCEEEEE-EeCCCCeEEEEEc
Q psy5792 284 AVDP------ESGYLFWSESGKIPLIARAGLDGKKQ---TILAQEIIMPIKDITLDRKNKRVYWC-YSVGSNVLESMDY 352 (377)
Q Consensus 284 avdp------~~g~lywtd~g~~~~I~r~~ldG~~~---~~l~~~~~~~P~glalD~~~~~LYw~-d~~~~~~i~~~~~ 352 (377)
++.. ..|.+|++++. ..+|.++.+++... ..++......|.++++++ .+.||++ |. ..++|+++..
T Consensus 277 ~~y~g~~fp~~~g~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~td~-~~g~I~ri~~ 352 (353)
T 2g8s_A 277 AFYNSDKFPQWQQKLFIGALK-DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVLTDE-SSGELLKVSP 352 (353)
T ss_dssp EEECCSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEEECS-TTEEEEEEEC
T ss_pred EEECCccCcccCCcEEEEEcc-CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEEEeC-CCCEEEEEeC
Confidence 9974 35899999985 68999999986422 122222245899999986 5679996 66 7789988853
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-12 Score=118.91 Aligned_cols=239 Identities=9% Similarity=0.037 Sum_probs=156.9
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEe----CCCCCceEEEEEEC-----CeEEEEcCC---C----
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVS----MPDAAQVVAAVFYK-----GRIIYSDAN---D---- 78 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~----~~~~~~p~~lav~~-----~~ly~td~~---~---- 78 (377)
+..|.+++++++ ++||+++.. ++|.+++.+|. +.+.. ......|.||++.. ++||+++.. .
T Consensus 28 l~~P~~ia~~pd-G~l~V~e~~-g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GRYLVTERP-GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEET-TEEEEEETT-TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCC-CeEEEEeCC-CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 678999999985 589999987 99999987776 33321 13456799999964 699999863 3
Q ss_pred CceEEEcCCCC-----ceEEEec----C-CC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcC
Q psy5792 79 GNIRSINLDGS-----NSTVLRN----N-AG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAG 147 (377)
Q Consensus 79 ~~I~~~~~~g~-----~~~~~~~----~-~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~ 147 (377)
++|.+++.++. ..+++.. . .. +.+|++ .+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~-~p--------------------------------------- 144 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRF-GP--------------------------------------- 144 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEE-CT---------------------------------------
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEE-CC---------------------------------------
Confidence 67999884443 1222211 0 11 233332 11
Q ss_pred CCcEEEEEeCC-------------CCeEEEEEcCCC--------CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC
Q psy5792 148 ISDFILFSVNS-------------GYDIMGIKYNKN--------ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH 206 (377)
Q Consensus 148 ~~~~l~~s~~~-------------~~~I~~~~l~~~--------~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~ 206 (377)
+..|+++.++ .|+|.+++.++. .. +. + ..++.+|.++++|+.++.||++|...
T Consensus 145 -DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~---~i-~-a~G~rnp~Gla~d~~~g~l~v~d~g~ 218 (354)
T 3a9g_A 145 -DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS---PI-W-SYGHRNPQGIDWHRASGVMVATEHGP 218 (354)
T ss_dssp -TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC---CE-E-EECCSCCCEEEECTTTCCEEEEECCS
T ss_pred -CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC---cE-E-EEccCCcceEEEeCCCCCEEEEecCC
Confidence 2235554321 256999998875 12 11 1 24678899999999889999999865
Q ss_pred C---cEEEEEcCCCC---------------cEEEEeccccCCCCCCCCcceEEE-------eccCCeEEEEcCCCCEEEE
Q psy5792 207 G---TISRTHRDGTG---------------RENIIEYVETGDPTPVDQFTDIAV-------DWIAQNIYWSDPKENVIEV 261 (377)
Q Consensus 207 ~---~I~~~~~~G~~---------------~~~i~~~~~~~~~~~~~~p~~iav-------D~~~~~lYwtd~~~~~I~~ 261 (377)
+ .|.++... .+ ...+.. .......|.|+++ +| .++||+++...++|.+
T Consensus 219 ~~~dei~~i~~G-~nyGwp~~~g~~~~~~~~~p~~~-----~~~~~~ap~G~~~y~g~~fp~~-~G~l~v~~~~~~~v~~ 291 (354)
T 3a9g_A 219 VGHDEVNIILKG-GNYGWPLATGKAGRGEFVDPVID-----TGSETWAPSGASFVHGDMFPGL-RGWLLIACLRGSMLAA 291 (354)
T ss_dssp SSCCEEEEECTT-CBCCTTTCCSCCCCTTSCCCSEE-----CTTCCCCEEEEEECCSSSCGGG-TTEEEEEETTTTEEEE
T ss_pred CCCcEEEEecCC-CcCCCCcccCCCCCCCCcCCEee-----cCCCCcCCcceEEECCCCCccc-CCcEEEEEcCCCEEEE
Confidence 4 46665542 21 011111 0012235999999 64 6899999999999999
Q ss_pred EEcCCC--e--EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC---------eEEEEecCC
Q psy5792 262 ARLTGQ--Y--RYVLISGGVDQPSALAVDPESGYLFWSESGKIP---------LIARAGLDG 310 (377)
Q Consensus 262 ~~~~g~--~--~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~---------~I~r~~ldG 310 (377)
+++++. . ...++......|++++++| .|.||++++.... +|+|+...|
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g 352 (354)
T 3a9g_A 292 VNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTSNRDGRGSLRAGDDKILKIVSEQ 352 (354)
T ss_dssp EEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred EEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence 999853 2 2344443467899999998 5899999963223 888887654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.3e-11 Score=110.24 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=155.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC-CCCceE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL-DGSNST 92 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~g~~~~ 92 (377)
..+.|.+.|+.++++||++...+.|.++++++. .+.+. ....|.++++ .++.+|++.. ..|.+++. +|+..
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~v~~i~~~~dg~l~v~~~--~gl~~~d~~~g~~~- 122 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIASD--DGLFLRDTATGVLT- 122 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEEET--TEEEEEETTTCCEE-
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE---CCCcceEEEEeCCCeEEEEEC--CCEEEEECCCCcEE-
Confidence 456788999988999999999999999999988 65553 2346888888 6778888762 34777763 33221
Q ss_pred EEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCc
Q psy5792 93 VLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172 (377)
Q Consensus 93 ~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~ 172 (377)
.+.. ....
T Consensus 123 ~~~~----------------------------------------------------------------------~~~~-- 130 (326)
T 2ghs_A 123 LHAE----------------------------------------------------------------------LESD-- 130 (326)
T ss_dssp EEEC----------------------------------------------------------------------SSTT--
T ss_pred EEee----------------------------------------------------------------------CCCC--
Confidence 1100 0000
Q ss_pred eeeEEEEecCCCCceEEEEEECCCCEEEEEEcC------CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 173 KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID------HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 173 ~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~------~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
.....+..+++|+ ++++|+++.. .+.|++++ +|.. +.+.. ....|.++++++.+
T Consensus 131 ---------~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~--------~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 131 ---------LPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV-TKLFA--------DISIPNSICFSPDG 190 (326)
T ss_dssp ---------CTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEEEE--------EESSEEEEEECTTS
T ss_pred ---------CCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcE-EEeeC--------CCcccCCeEEcCCC
Confidence 0012355666776 4567777642 35788888 5432 23322 34568999999877
Q ss_pred CeEEEEcCCCCEEEEEEcC---C-C--eEEEEee--CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe
Q psy5792 247 QNIYWSDPKENVIEVARLT---G-Q--YRYVLIS--GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~---g-~--~~~~l~~--~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~ 318 (377)
+.||+++...++|.+.+++ | . .++++.. .....|.++++|+ .|.||++.++ ..+|.+.+.+|.....+..
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~-~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWG-EGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEET-TTEEEEECTTCCEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeC-CCEEEEECCCCCEEEEEEC
Confidence 7899999988999999985 4 2 1233332 1245699999997 6899999875 5789999987765444433
Q ss_pred cCCCCceEEEEe-CCCCEEEEEEeCCC
Q psy5792 319 EIIMPIKDITLD-RKNKRVYWCYSVGS 344 (377)
Q Consensus 319 ~~~~~P~glalD-~~~~~LYw~d~~~~ 344 (377)
. ...|.+++++ ...+.||++.. ..
T Consensus 269 ~-~~~~~~~af~g~d~~~L~vt~~-~~ 293 (326)
T 2ghs_A 269 P-GKQTTCPAFIGPDASRLLVTSA-RE 293 (326)
T ss_dssp S-CSBEEEEEEESTTSCEEEEEEB-CT
T ss_pred C-CCCcEEEEEecCCCCEEEEEec-CC
Confidence 2 4579999998 66789999887 54
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-12 Score=119.40 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCceEEEEEECC---CCEEEEEEcCC-----CcEEEEEcCCC---CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 184 VSLAAKVDFHAA---EDYIYWVDIDH-----GTISRTHRDGT---GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 184 ~~~~~~l~~d~~---~~~ly~sd~~~-----~~I~~~~~~G~---~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
...+.+|++++. ++.||+++... ++|.+++.++. ..++++... .........|.+|++++ .++||++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~-p~~~~~~h~~~~l~~~p-dG~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGI-PARPHGLHSGGRIAFGP-DGMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEE-CCCTTCCCCCCCEEECT-TSCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeC-CCCCCCCcCCceEEECC-CCCEEEE
Confidence 345888888886 68999998754 78999998864 233443310 00012345689999997 5799999
Q ss_pred cCC-------------CCEEEEEEcCCCe------------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC------
Q psy5792 253 DPK-------------ENVIEVARLTGQY------------RYVLISGGVDQPSALAVDPESGYLFWSESGKIP------ 301 (377)
Q Consensus 253 d~~-------------~~~I~~~~~~g~~------------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~------ 301 (377)
+.. .++|.+++++|+. ...+...++..|.+|++||.+|.||++|.+...
T Consensus 152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~ 231 (352)
T 2ism_A 152 TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH 231 (352)
T ss_dssp CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence 742 3699999999831 122334468899999999988999999987422
Q ss_pred -eEEEEecCCC---------------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 302 -LIARAGLDGK---------------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 302 -~I~r~~ldG~---------------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.|.++.-.+. ......-.....|.|+++ ..+.||+++. ..++|.++++++..
T Consensus 232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G~l~v~~~-~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRGDLYVAGL-RGQALLRLVLEGER 299 (352)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETTEEEEEET-TTTEEEEEEEEEET
T ss_pred eEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECCEEEEEEC-CCCEEEEEEECCCC
Confidence 3666643320 011111111346999999 4689999999 99999999998543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-10 Score=108.55 Aligned_cols=260 Identities=12% Similarity=0.079 Sum_probs=159.0
Q ss_pred CcCCccccccCCCCeEEEEeCC--CCcEEEEEcCCc-EEEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc--C
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTL--SHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN--L 86 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~--~ 86 (377)
...|.++++++++. ||+++.. .+.|...++++. .+.+.. ......|.+|++ .+.+||+++...+.|..++ .
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 35899999999766 9999864 688999999766 444431 134668999999 4557999998888888877 3
Q ss_pred CCCceEEE--ecC-CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 87 DGSNSTVL--RNN-AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 87 ~g~~~~~~--~~~-~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
+|....+. ... .+|. .++ .. ..+..+++ .++.-++++....+.|.
T Consensus 118 ~g~~~~~~~~~~~~~~p~-------~~~---~~-------~~~~~~~~---------------spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPR-------PEQ---DG-------SHIHYTDL---------------TPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp TSCEEEEEEEECCCCCSS-------TTC---SS-------CCEEEEEE---------------CTTSCEEEEETTTTEEE
T ss_pred CCCeeecceeecCCCCCC-------ccc---cC-------CCceEEEE---------------CCCCcEEEEeCCCCEEE
Confidence 44332221 110 0010 000 00 00000000 11112677776666788
Q ss_pred EEEcCCCCceeeE-EEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC--CCcEEEEeccc-cCCCCCCCCcce
Q psy5792 164 GIKYNKNESKVTQ-VLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG--TGRENIIEYVE-TGDPTPVDQFTD 239 (377)
Q Consensus 164 ~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G--~~~~~i~~~~~-~~~~~~~~~p~~ 239 (377)
.++++.... +.. ..........|..+++++.++.||+++...+.|..++++. ...+.+..... .........|.+
T Consensus 166 ~~~~~~~g~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 166 VYNVSDAGQ-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA 244 (347)
T ss_dssp EEEECTTSC-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred EEEECCCCc-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence 888873221 011 1112333456889999998888999998888888887764 12111111000 000011235889
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcC--CCeEE-EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLT--GQYRY-VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~-~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+++++.++.||+++...++|.+.+++ |.... ..+......|++++++|...+||+++.. ...|....++
T Consensus 245 i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~d 316 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN-TDNATLYARD 316 (347)
T ss_dssp EEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT-TTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC-CCcEEEEEEe
Confidence 99999888899999888899999886 33222 1223335579999999988899999875 4566665444
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-10 Score=107.43 Aligned_cols=259 Identities=11% Similarity=0.056 Sum_probs=173.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-E-EEEEeCCCCCceEE-EEE--ECCeEEEEcCCCC--ceEEEc-CCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-V-AKVVSMPDAAQVVA-AVF--YKGRIIYSDANDG--NIRSIN-LDG 88 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~-~~i~~~~~~~~p~~-lav--~~~~ly~td~~~~--~I~~~~-~~g 88 (377)
.| ++++++++++||++....+.|..+|+++. . ...+ .....|.. +++ .+.+||.++...+ .|..++ .++
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI--QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE--EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec--ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 45 99999999999999999999999999777 4 5544 44556777 888 4557885554434 899999 566
Q ss_pred CceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe-EEEEEc
Q psy5792 89 SNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKY 167 (377)
Q Consensus 89 ~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~-I~~~~l 167 (377)
+....+.....|.++++ +++.+ +++++....+. |..+++
T Consensus 119 ~~~~~~~~~~~~~~~~~-spdg~---------------------------------------~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 119 KFISTIPIPYDAVGIAI-SPNGN---------------------------------------GLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EEEEEEECCTTEEEEEE-CTTSS---------------------------------------CEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCccceEE-CCCCC---------------------------------------EEEEEecCCCceEEEEEE
Confidence 65555554444777665 33322 46666655445 777776
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc---EEEEeccccCCCCCCCCcceEEEec
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR---ENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~---~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
+....-.......+.....+.++++++.++++|+++...+.|..++++.... ...+. .-..|.++++++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--------~~~~~~~~~~sp 230 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--------TNNLPGTIVVSR 230 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--------CSSCCCCEEECT
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--------CCCCCceEEECC
Confidence 6433200000122234456999999998889999998889999999874443 22222 225699999999
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEEEEe--eCC-------CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEE
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRYVLI--SGG-------VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI 315 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~~l~--~~~-------~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~ 315 (377)
.++.||+++...+.|.+.++.....+.+. ... .....+++++|...+||++... ...|...++++.....
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTISGKVVGY 309 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEecCCcccc
Confidence 88889999988889999999865442221 111 1112458999988899999864 5788888887654333
Q ss_pred EEecCCCCceEEEE
Q psy5792 316 LAQEIIMPIKDITL 329 (377)
Q Consensus 316 l~~~~~~~P~glal 329 (377)
+. .+....++++
T Consensus 310 ~~--~~~~~g~~~~ 321 (331)
T 3u4y_A 310 VA--GIEANGGIAI 321 (331)
T ss_dssp CT--TCCCBSCEEE
T ss_pred ee--cccccCCeEE
Confidence 21 2334444544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=116.72 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=141.2
Q ss_pred CcCCccccccCCCCeEEEEeCC-----CCcEEEEEcC-Cc-EEEEEeC----CCCCceEEEEEE--CCeEEEEcC---CC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTL-----SHSLHYVNIE-VK-VAKVVSM----PDAAQVVAAVFY--KGRIIYSDA---ND 78 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~-----~~~I~~~~~d-G~-~~~i~~~----~~~~~p~~lav~--~~~ly~td~---~~ 78 (377)
+..|.|+++|.. ++|||+|.. ..+|.++|++ |+ .+++... .....|.+|++. ++++|++|. ..
T Consensus 66 ~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 66 FDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 578999999987 689999987 5899999997 55 5555311 112467999996 579999998 77
Q ss_pred CceEEEc-CCCCceEEEecC--CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 79 GNIRSIN-LDGSNSTVLRNN--AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 79 ~~I~~~~-~~g~~~~~~~~~--~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
+.|.+++ .+|+..+++... ..|.... +..
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~------------------------------------------------~~~ 176 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDID------------------------------------------------LVI 176 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCC------------------------------------------------CEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccc------------------------------------------------eeE
Confidence 8999999 556655544220 0010000 000
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC----CCC--cE-----EEEe
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD----GTG--RE-----NIIE 224 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~----G~~--~~-----~i~~ 224 (377)
++.. +...+.++. +.+. ...+.+|++++.++.||+++....+|++++.+ +.. .+ ....
T Consensus 177 ~g~~--~~~~~~~g~-------~~~~--~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 177 DGVP--VQIGQPDGT-------VIRP--HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TTEE--CBEECTTSC-------EECC--CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred CCEE--EEeccCCCc-------eece--ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 0000 100011111 0000 12467899999888999999988899999853 210 00 1111
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc-CCCeEEEEeeC-CCCCceeEEEcCCCCeEEEEec
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL-TGQYRYVLISG-GVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~-~g~~~~~l~~~-~~~~P~~iavdp~~g~lywtd~ 297 (377)
..+.|.||++|. .++||+++...++|.+.+. +|+.. ++... .+..|.++++++ .|.||+++.
T Consensus 246 --------~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~-~g~l~v~~~ 309 (343)
T 2qe8_A 246 --------EKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGS-DGYLYFDCN 309 (343)
T ss_dssp --------ECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECT-TSCEEEEEC
T ss_pred --------cCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECC-CCcEEEEeC
Confidence 234799999996 6899999999999999999 77643 44443 377899999998 589999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-09 Score=104.02 Aligned_cols=238 Identities=12% Similarity=0.119 Sum_probs=174.6
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
..|.++++++.+.+||++....+.|...|+... ...+ .....+.++++ .+.+||++....+.|..++ .+++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 468899999999999999988999999999666 4444 23338899999 4667999988889999999 55655
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
...+.....+.++.+ +++. ..++++....+.|+.+++...
T Consensus 109 ~~~~~~~~~~~~~~~-s~dg---------------------------------------~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 109 AGTVKTGKSPLGLAL-SPDG---------------------------------------KKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp EEEEECSSSEEEEEE-CTTS---------------------------------------SEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeCCCCcceEEE-CCCC---------------------------------------CEEEEEeCCCCEEEEEECCCC
Confidence 555544333656554 3322 246667666667999888765
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
.. +..+.....+..+++++.++.||++....+.|+..++.......... .-..+.++++++.++.||
T Consensus 149 ~~-----~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 149 AV-----INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------VEAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp EE-----EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------CSSEEEEEEECTTSSEEE
T ss_pred cE-----EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------cCCCccceEECCCCCEEE
Confidence 32 22233345688999999888999998888999999987544333333 234689999998888899
Q ss_pred EEcC--CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 251 WSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 251 wtd~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
.+.. ..+.|.+.++........+.. ...|.+++++|.+.+||++... ..+|...++...
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~-d~~v~v~d~~~~ 276 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSF-XNTVSVIDTATN 276 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTT
T ss_pred EEecCcCCCcEEEEECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCC-CCEEEEEECCCC
Confidence 8876 678999999987655444443 4568999999988899998753 578888887643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-10 Score=108.36 Aligned_cols=240 Identities=14% Similarity=0.185 Sum_probs=158.5
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC-CCCceEEE------ecCCC-ceeEEeeecCCCCcccCCCc
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL-DGSNSTVL------RNNAG-ISDFILFSVNSGYDIMGIKY 119 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~g~~~~~~------~~~~~-p~~i~v~~~~~~~~~~~~~C 119 (377)
.+++. ..+..|++|++ -++.||+++...++|++++. +|+...+. ..+.. +.||++ +|+-.
T Consensus 24 ~~~va--~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~-~Pdf~-------- 92 (347)
T 3das_A 24 LRTVA--TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL-SPDYA-------- 92 (347)
T ss_dssp EEEEE--CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE-CTTHH--------
T ss_pred eEEee--cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe-ccccc--------
Confidence 45565 78999999999 67799999998899999984 45543321 12233 888876 44210
Q ss_pred CCCCCCceeccccCCCccccCCcCCCcCCCcEEEE--EeCCCCeEEEEEcCCCC-----ceeeEEEE---ecCCCCceEE
Q psy5792 120 NKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF--SVNSGYDIMGIKYNKNE-----SKVTQVLG---PLSKVSLAAK 189 (377)
Q Consensus 120 ~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~--s~~~~~~I~~~~l~~~~-----~~~~~~~~---~~~~~~~~~~ 189 (377)
.+..|++ +....+.|.++.+++.. ....+.++ |.........
T Consensus 93 ----------------------------~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~ 144 (347)
T 3das_A 93 ----------------------------SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGR 144 (347)
T ss_dssp ----------------------------HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCC
T ss_pred ----------------------------cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCcc
Confidence 0112433 43334459999887621 10012222 2222334667
Q ss_pred EEEECCCCEEEEEEc-------------CCCcEEEEEcCCC--------CcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 190 VDFHAAEDYIYWVDI-------------DHGTISRTHRDGT--------GRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 190 l~~d~~~~~ly~sd~-------------~~~~I~~~~~~G~--------~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
|+|++ +++||++-- ..++|+|++.+|+ ..++ .. .++.+|.+|++|+ .+.
T Consensus 145 l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i-~a-------~G~RNp~Gla~dp-~G~ 214 (347)
T 3das_A 145 IAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPV-YS-------YGHRNVQGLAWDD-KQR 214 (347)
T ss_dssp EEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCE-EE-------BCCSBCCEEEECT-TCC
T ss_pred ccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeE-Ee-------eCCCCcceEEECC-CCC
Confidence 99998 579999942 3579999999987 4344 44 4788899999998 799
Q ss_pred EEEEcCCCC---EEEEEEcCCCe----E----------E-EEee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 249 IYWSDPKEN---VIEVARLTGQY----R----------Y-VLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 249 lYwtd~~~~---~I~~~~~~g~~----~----------~-~l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
||++|.... .|.++...+.+ + . +... .....|.||++. .|.+|.++.. ..+|.|+.++
T Consensus 215 L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~-~~~l~~v~~~ 291 (347)
T 3das_A 215 LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLR-GERLWRIPLK 291 (347)
T ss_dssp EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEEST-TCSEEEEEEE
T ss_pred EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeecccc-CCEEEEEEec
Confidence 999997653 56665543321 0 0 0111 112468899995 7999999985 6899999988
Q ss_pred CCC----eEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 310 GKK----QTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 310 G~~----~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
+.. .+.++......|.++++++ .+.||+++.
T Consensus 292 ~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 292 GTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp TTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 653 2444544467899999985 689999976
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-11 Score=112.57 Aligned_cols=248 Identities=8% Similarity=0.053 Sum_probs=153.5
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-----CCCCCceEEEEEE-----CCeEEEEcCC------
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-----MPDAAQVVAAVFY-----KGRIIYSDAN------ 77 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-----~~~~~~p~~lav~-----~~~ly~td~~------ 77 (377)
+..|.++++++++.+||+++. .++|.+++.+|. .+.+.. ......|.+|++. +++||+++..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 678999999987644999997 489999998887 433210 1234578999995 6899999764
Q ss_pred -CCceEEEcCCCC-----ceEEEecCC-------C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcC
Q psy5792 78 -DGNIRSINLDGS-----NSTVLRNNA-------G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVD 143 (377)
Q Consensus 78 -~~~I~~~~~~g~-----~~~~~~~~~-------~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~ 143 (377)
..+|.+++.++. ..+++.... . +.+|++
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~-------------------------------------- 137 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVF-------------------------------------- 137 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEE--------------------------------------
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEE--------------------------------------
Confidence 346888873321 122221110 0 112211
Q ss_pred CCcCCCcEEEEEeCC-------------CCeEEEEEcCCCCce----------eeEEEEecCCCCceEEEEEECCCCEEE
Q psy5792 144 FHAGISDFILFSVNS-------------GYDIMGIKYNKNESK----------VTQVLGPLSKVSLAAKVDFHAAEDYIY 200 (377)
Q Consensus 144 ~C~~~~~~l~~s~~~-------------~~~I~~~~l~~~~~~----------~~~~~~~~~~~~~~~~l~~d~~~~~ly 200 (377)
+++..|+++.++ .|+|.+++.++.-.. ..+ ++ ..++.+|.++++|+.++.||
T Consensus 138 ---~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~-i~-a~G~rnp~gl~~d~~~g~l~ 212 (353)
T 2g8s_A 138 ---DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE-IW-SYGIRNPQGMAMNPWSNALW 212 (353)
T ss_dssp ---CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT-EE-EECCSEEEEEEEETTTTEEE
T ss_pred ---CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc-EE-EEcCcCccceEEECCCCCEE
Confidence 123457777543 357999999875100 001 11 24677899999999889999
Q ss_pred EEEcCC---CcEEEEEcCCCC---cE---------EEE-----eccccCCC----CCCCCcceEEEec------cCCeEE
Q psy5792 201 WVDIDH---GTISRTHRDGTG---RE---------NII-----EYVETGDP----TPVDQFTDIAVDW------IAQNIY 250 (377)
Q Consensus 201 ~sd~~~---~~I~~~~~~G~~---~~---------~i~-----~~~~~~~~----~~~~~p~~iavD~------~~~~lY 250 (377)
++|... ..|.++...+.. .. .+. .......+ .....|.|+++.. ..+.+|
T Consensus 213 ~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~ 292 (353)
T 2g8s_A 213 LNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLF 292 (353)
T ss_dssp EEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEE
T ss_pred EEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEE
Confidence 999764 356655432210 00 000 00000000 0112588999962 257999
Q ss_pred EEcCCCCEEEEEEcCCCeE---EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYR---YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
+++...++|.++++++... ..++.....+|++|+++| .|.||+++.....+|+|+.
T Consensus 293 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 293 IGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEEECSTTEEEEEEE
T ss_pred EEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEEEeCCCCEEEEEe
Confidence 9999999999999986431 223333346899999998 6889997432367899875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-09 Score=101.92 Aligned_cols=287 Identities=9% Similarity=0.048 Sum_probs=189.3
Q ss_pred Ccccc---ccCCCCeEEEEeCCC---------C------cEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCC
Q psy5792 18 VASTL---KPQSGPFVYGVKTLS---------H------SLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDAN 77 (377)
Q Consensus 18 ~~~~~---~d~~~~~ly~~d~~~---------~------~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~ 77 (377)
+..++ ..+....+|++.... + .|..++.++. .+.+........|.++++ .++.+|++...
T Consensus 63 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 142 (433)
T 3bws_A 63 LVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLE 142 (433)
T ss_dssp EEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTT
T ss_pred cEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCC
Confidence 34455 566666777665432 2 6777777653 332221133445777888 47889999888
Q ss_pred CCceEEEc-CCCCceEEEec-----CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCc
Q psy5792 78 DGNIRSIN-LDGSNSTVLRN-----NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISD 150 (377)
Q Consensus 78 ~~~I~~~~-~~g~~~~~~~~-----~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~ 150 (377)
.+.|...+ .+|+....+.. ... +.++++ +++ .
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~----------------------------------------~ 181 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-PEH----------------------------------------N 181 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-GGG----------------------------------------T
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEE-cCC----------------------------------------C
Confidence 88899999 55655543221 111 233332 221 2
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
.++++....+.|+.++++.... ... +. .....+.++++++.++.+|++....+.|...++..........
T Consensus 182 ~~~~s~~~d~~v~~~d~~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~------ 251 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKTLAY--KAT-VD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD------ 251 (433)
T ss_dssp EEEEEEGGGTEEEEEETTTCCE--EEE-EE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC------
T ss_pred EEEEEECCCCEEEEEECCCceE--EEE-Ec-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec------
Confidence 3666665556799998876533 111 11 2345689999999999999999888999999987433222222
Q ss_pred CCCCCCcceEEEeccCCeEEEEcC-------CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDP-------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~-------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
....|.++++++.++.||.+.. ..+.|.+.++........+.. ...|.+++++|....||++... ..+|
T Consensus 252 --~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~-~~~v 327 (433)
T 3bws_A 252 --KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PGNKRHIVSGNTENKIYVSDMC-CSKI 327 (433)
T ss_dssp --CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-EECEEEEEECSSTTEEEEEETT-TTEE
T ss_pred --CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-CCCcceEEECCCCCEEEEEecC-CCEE
Confidence 2345999999987778888764 356899999976654333322 2368999999987799999764 6889
Q ss_pred EEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC--------------CeEEEEEccCCceEEEE
Q psy5792 304 ARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS--------------NVLESMDYSGGSKMQLK 361 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~--------------~~i~~~~~~G~~~~~~~ 361 (377)
...+++.......+.. ...|.++++++.++.||.+.. .. +.|...+...+.....+
T Consensus 328 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 328 EVYDLKEKKVQKSIPV-FDKPNTIALSPDGKYLYVSCR-GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEC-CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCcEEEEecC-CCCCCeEEEcCCCCEEEEEec-CCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 9999885544433443 467899999988888999887 54 48999998755444333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-09 Score=103.67 Aligned_cols=327 Identities=9% Similarity=0.029 Sum_probs=204.0
Q ss_pred ceeEeeccccC------CCCcCCccccccCCCCeEEEEeCCCCcEEEEEcC---Cc-EEEEEeCCCCCceEEEEEE----
Q psy5792 2 GYLHVLPYTRN------PSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE---VK-VAKVVSMPDAAQVVAAVFY---- 67 (377)
Q Consensus 2 ~~~~~~~~~~~------~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d---G~-~~~i~~~~~~~~p~~lav~---- 67 (377)
|++.|.|-... ++...|.++++++++.++|++. ..+.|..+|+. ++ ..++ .....|.+|++.
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~v~~i---~~G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEI---KIGSEARSIETSKMEG 252 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEE---ECCSEEEEEEECCSTT
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCCcEeEEE---ecCCCCceeEEccccC
Confidence 45666664332 3456889999999999999986 46789999994 44 5555 345689999996
Q ss_pred --CCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 68 --KGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 68 --~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
+.++|+++...+.|..+| .+.+....+.....+.+-.-|++... .+.+.. ++
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r--------------va~i~~-s~---------- 307 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR--------------VAAILA-SH---------- 307 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC--------------EEEEEE-CS----------
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc--------------eEEEEE-cC----------
Confidence 448999999999999999 66666555432100000000111100 000000 00
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~ 224 (377)
..+.++++....|.|..++...... ..+..+.....+.++.+++.+.++|.++..+++|..++.........+.
T Consensus 308 ---~~~~~vv~~~~~g~v~~vd~~~~~~---~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 308 ---YRPEFIVNVKETGKILLVDYTDLNN---LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp ---SSSEEEEEETTTTEEEEEETTCSSE---EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEecCCCeEEEEecCCCcc---ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 0124556666667788888765432 1222233345688889999899999999989999999987432222222
Q ss_pred ccccCCCC--CCCCc-ceEE-EeccCCeEEEEcC-CCCEEEEEEcCC--------CeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 225 YVETGDPT--PVDQF-TDIA-VDWIAQNIYWSDP-KENVIEVARLTG--------QYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 225 ~~~~~~~~--~~~~p-~~ia-vD~~~~~lYwtd~-~~~~I~~~~~~g--------~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
. ...+| .|.. +++..+.+|.+.. ..+.|.+++.+. +..+++ ......+..|+++|...+
T Consensus 382 -------vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i-~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 382 -------TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF-PALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp -------CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCSE
T ss_pred -------ccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE-ecCCCCCEEEEeCCCCCe
Confidence 1 12234 3655 4766678887754 558999999875 223333 222344677999998888
Q ss_pred EEEEecCC-----CCeEEEEecCC-----CCe--EEEEe-------cCCCCceEEEEeCCCCEEEEEEeC---CCCeEEE
Q psy5792 292 LFWSESGK-----IPLIARAGLDG-----KKQ--TILAQ-------EIIMPIKDITLDRKNKRVYWCYSV---GSNVLES 349 (377)
Q Consensus 292 lywtd~g~-----~~~I~r~~ldG-----~~~--~~l~~-------~~~~~P~glalD~~~~~LYw~d~~---~~~~i~~ 349 (377)
||+..... ..+|..++++- ... +++.. +.-..|..++++..+.+||++.++ ..+.|..
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v 533 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 533 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence 88876421 24788876542 232 33311 112478899999999999999761 2688988
Q ss_pred EEccCCceEEEEecCCCCCccc
Q psy5792 350 MDYSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 350 ~~~~G~~~~~~~~~~~~~~p~~ 371 (377)
+|.........+....+..|-+
T Consensus 534 ~D~~t~~~~~~i~~~~~~~P~g 555 (567)
T 1qks_A 534 VDDKTLELKHVIKDERLVTPTG 555 (567)
T ss_dssp EETTTTEEEEEECCTTCCSEEE
T ss_pred EECCCceEEEEeCCCcccCCCe
Confidence 8877544444454556777743
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.1e-10 Score=100.31 Aligned_cols=202 Identities=9% Similarity=-0.042 Sum_probs=139.5
Q ss_pred CCccccccCCCCeEEEEeC--CCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKT--LSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~--~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.|.|++++++ ++||.+.. ..+.|.++|+... ..++- ......+.|+++.+++||++++..+.+.++| .+++..
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEE
Confidence 5789999976 69999975 4789999999765 55552 2444566788999999999999999999999 677776
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
..+..+ .|.|..+.... ..+++++. ++.|..++.....
T Consensus 100 ~~i~~g-~~~g~glt~Dg----------------------------------------~~l~vs~g-s~~l~viD~~t~~ 137 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDG----------------------------------------KILYGSDG-TSILYEIDPHTFK 137 (266)
T ss_dssp EEEECC-SSSCCEEEECS----------------------------------------SSEEEECS-SSEEEEECTTTCC
T ss_pred EEEECC-CCCeEEEEECC----------------------------------------CEEEEECC-CCeEEEEECCCCc
Confidence 666544 23333332221 13777774 4578888776543
Q ss_pred ceeeEEEEecC----CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc------cCCCCCCCCcceEE
Q psy5792 172 SKVTQVLGPLS----KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE------TGDPTPVDQFTDIA 241 (377)
Q Consensus 172 ~~~~~~~~~~~----~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~------~~~~~~~~~p~~ia 241 (377)
. .. ..++. ....+..+.+. +++||......+.|.++++........+.... .........|.|||
T Consensus 138 v--~~-~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 138 L--IK-KHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp E--EE-EEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred E--EE-EEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 3 11 22222 12246677777 67999999888999999997544333332110 00111234689999
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
+|+.++++|+|.+..+++.++++...
T Consensus 213 ~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 213 WDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999999999999999887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.8e-09 Score=103.08 Aligned_cols=302 Identities=9% Similarity=0.062 Sum_probs=200.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc--C-Cc-EEEEEeCCCCCceEEEEEE------CCeEEEEcCCCCceEEEc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI--E-VK-VAKVVSMPDAAQVVAAVFY------KGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~--d-G~-~~~i~~~~~~~~p~~lav~------~~~ly~td~~~~~I~~~~ 85 (377)
..|.++++++++++||.++.. +.|..+|+ . ++ ..++ .....|.++++. +.+||+++...+.|..+|
T Consensus 179 ~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp TTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred cccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 358899999999999999887 99999999 3 33 5555 346689999994 457999988788899998
Q ss_pred -CCCCceEEEecCC------------CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEE
Q psy5792 86 -LDGSNSTVLRNNA------------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFI 152 (377)
Q Consensus 86 -~~g~~~~~~~~~~------------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l 152 (377)
.+++...++.... .+.++.+ ++ ....+
T Consensus 255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~-s~---------------------------------------~~~~~ 294 (543)
T 1nir_A 255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA-SH---------------------------------------EHPEF 294 (543)
T ss_dssp TTTCCEEEEEECCEECSSSCCEESCCCEEEEEE-CS---------------------------------------SSSEE
T ss_pred ccccccceeecccCcccCccccccCCceEEEEE-CC---------------------------------------CCCEE
Confidence 6676665554210 0122221 11 12357
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCC
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPT 232 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~ 232 (377)
+++....+.|..+++..... .. +..+.....+.++++++.++++|.++...++|..++.........+.. .
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~--l~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~------g 365 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDN--LT-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV------G 365 (543)
T ss_dssp EEEETTTTEEEEEECTTSSS--CE-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC------S
T ss_pred EEEECCCCeEEEEEecCCCc--ce-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc------C
Confidence 77777777899998865432 11 112223455888999998889999998889999999874332222220 1
Q ss_pred CCCCc-ceEEE-eccCCeEEEEcC-CCCEEEEEEcCC--------CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC--
Q psy5792 233 PVDQF-TDIAV-DWIAQNIYWSDP-KENVIEVARLTG--------QYRYVLISGGVDQPSALAVDPESGYLFWSESGK-- 299 (377)
Q Consensus 233 ~~~~p-~~iav-D~~~~~lYwtd~-~~~~I~~~~~~g--------~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-- 299 (377)
...+| .+..+ ++..+.+|.+.. ..++|.+.+.+. +..+++ ......+..|+++|...+||......
T Consensus 366 ~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-EcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 11223 24443 665688998876 568999999875 233333 33345578999999877888765211
Q ss_pred ---CCeEEEEecC-CCCe-EEE-E------ecCCCCceEEEEeCCCCEEEEEEeC---CCCeEEEEEccCCceEEEEecC
Q psy5792 300 ---IPLIARAGLD-GKKQ-TIL-A------QEIIMPIKDITLDRKNKRVYWCYSV---GSNVLESMDYSGGSKMQLKLSS 364 (377)
Q Consensus 300 ---~~~I~r~~ld-G~~~-~~l-~------~~~~~~P~glalD~~~~~LYw~d~~---~~~~i~~~~~~G~~~~~~~~~~ 364 (377)
...|...+.+ ++.. +.+ + .+.-..+..+++.+.+..||++.+. ..+.|..+|.........+...
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 2488888876 3433 333 1 2223568889999999999998751 2488999888765555555566
Q ss_pred CCCCccc
Q psy5792 365 NIKNALL 371 (377)
Q Consensus 365 ~~~~p~~ 371 (377)
.+..|-+
T Consensus 525 ~~~~p~g 531 (543)
T 1nir_A 525 RLITPTG 531 (543)
T ss_dssp TCCSEEE
T ss_pred CccCCCe
Confidence 6777743
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-09 Score=100.35 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=125.4
Q ss_pred CCeEEEEEcCCCCceeeEEEE--ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccccCCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLG--PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVETGDPTPVD 235 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~~~~~~~~~ 235 (377)
.+.+..++++.... ....+. +......+.++++++.+++||.++...+.|+.++++ ....+.+... .. +....
T Consensus 118 ~g~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-~~--~~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV-DA--PDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-EC--SSTTC
T ss_pred CceEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-ec--CCCCC
Confidence 44577777753221 011111 112446799999999888999999878899999986 3232222110 00 01134
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEEEEcC---CCeE---EEEee--CCC---C-------CceeEE-EcCCCCeEEEEe
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLT---GQYR---YVLIS--GGV---D-------QPSALA-VDPESGYLFWSE 296 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~~~~~---g~~~---~~l~~--~~~---~-------~P~~ia-vdp~~g~lywtd 296 (377)
.|.++++++.++.||+++...++|.+.+++ |+.. ..+.. .+. . .|.+++ ++|...+||.++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 699999999888999999888889888775 4432 11211 111 2 489999 999888999998
Q ss_pred cCCCC----eEEEEecC--CCCeEE--EEecCCCCceEEEEeC---CCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 297 SGKIP----LIARAGLD--GKKQTI--LAQEIIMPIKDITLDR---KNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 297 ~g~~~----~I~r~~ld--G~~~~~--l~~~~~~~P~glalD~---~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.+.+. .|...+++ |.-... +....-..|.++++++ .+++||.+.. ..++|...++++.
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc-CCCeEEEEEEchh
Confidence 75321 67777664 332221 2222234688999998 6899999998 7888988888865
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-09 Score=99.57 Aligned_cols=152 Identities=16% Similarity=0.055 Sum_probs=108.5
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
+.|++++ +++||+++...+.+++++.+.. +.+... . .+...+.+|+-| ++.||.++ ..++|.+.++..
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~--~v~~~i--~---~g~~~g~glt~D--g~~l~vs~-gs~~l~viD~~t 135 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTL--SNIKNF--T---HQMKDGWGLATD--GKILYGSD-GTSILYEIDPHT 135 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTT--EEEEEE--E---CCSSSCCEEEEC--SSSEEEEC-SSSEEEEECTTT
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCC--cEEEEE--E---CCCCCeEEEEEC--CCEEEEEC-CCCeEEEEECCC
Confidence 4567777 7899999999999999998732 222220 0 122234455555 88999999 578999999987
Q ss_pred CeEE-EE-eeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEEEecC------------CCCceEEE
Q psy5792 267 QYRY-VL-ISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEI------------IMPIKDIT 328 (377)
Q Consensus 267 ~~~~-~l-~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~------------~~~P~gla 328 (377)
.... .+ +.. .+..|++++.. +|.||.+.+. ...|.+++..... ...+-... ...|+||+
T Consensus 136 ~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 136 FKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred CcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 5432 22 221 23457888876 6899999985 6899999986443 34443221 14789999
Q ss_pred EeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 329 LDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 329 lD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
+|+.+++||++.. ...+|+.+++..
T Consensus 213 ~~~~~~~lfVTgk-~~~~v~~i~l~~ 237 (266)
T 2iwa_A 213 WDQENKRIFVTGK-LWPKLFEIKLHL 237 (266)
T ss_dssp EETTTTEEEEEET-TCSEEEEEEEEE
T ss_pred EcCCCCEEEEECC-CCCeEEEEEEec
Confidence 9999999999999 999999999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-10 Score=104.06 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=120.8
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
....+.++++|+.++.|||++...+.|+++++++. .+.+. .....|.+|++|+ .++||+++...++|.+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~--------~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM--------HPSHHQNGHCLNK-QGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE--------SSCSSEEEEEECT-TCCEEEEETTTTEEEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE--------CCCCCcceeeECC-CCcEEEEecCCCeEEEE
Confidence 44568899999988889999999999999999976 44443 3456799999996 67899999888899999
Q ss_pred Ec-CCCeEEEEee-C--CCCCceeEEEcCCCCeEEEEec--CC--------------CCeEEEEecCCCCeEEEEecCCC
Q psy5792 263 RL-TGQYRYVLIS-G--GVDQPSALAVDPESGYLFWSES--GK--------------IPLIARAGLDGKKQTILAQEIIM 322 (377)
Q Consensus 263 ~~-~g~~~~~l~~-~--~~~~P~~iavdp~~g~lywtd~--g~--------------~~~I~r~~ldG~~~~~l~~~~~~ 322 (377)
++ +|+....... . ....|.++++|| +|.||++|. +. ...|++.+.+|. .+.+ ...+.
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~-~~~~~ 172 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAP-IRDRV 172 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEE-ECCCS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEe-ecCCC
Confidence 99 5655433211 1 245789999998 789999874 11 358999988844 3333 33478
Q ss_pred CceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 323 PIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 323 ~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.|+|+++++.++.| |++. ..++|..++++
T Consensus 173 ~~~gi~~s~dg~~l-v~~~-~~~~i~~~~~~ 201 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSDT-GDNATHRYCLN 201 (296)
T ss_dssp SEEEEEECTTSCEE-EEET-TTTEEEEEEEC
T ss_pred CCccEEECCCCCEE-EEeC-CCCeEEEEEEC
Confidence 99999999877777 9999 99999999986
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-09 Score=102.85 Aligned_cols=271 Identities=10% Similarity=0.058 Sum_probs=171.2
Q ss_pred CCCCeEEEEeCCC----CcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc-C
Q psy5792 25 QSGPFVYGVKTLS----HSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN-L 86 (377)
Q Consensus 25 ~~~~~ly~~d~~~----~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~-~ 86 (377)
+...++|+++... +.|..+|++.. ..+| .....| +|++ .+.+||+++. ..+.|..+| .
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I---~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT---DGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE---ECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 4557899999976 79999999887 5555 345578 9999 6778999986 356799999 6
Q ss_pred CCCceEEEecC--------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC
Q psy5792 87 DGSNSTVLRNN--------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS 158 (377)
Q Consensus 87 ~g~~~~~~~~~--------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~ 158 (377)
+++....+.-. ..|.++.+ +++. .++++++..
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~-spDG---------------------------------------k~lyV~n~~ 197 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNAL-TPDN---------------------------------------KNLLFYQFS 197 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEE-CTTS---------------------------------------SEEEEEECS
T ss_pred CCcEEEEEECCCccccccCCCcceEEE-cCCC---------------------------------------CEEEEEecC
Confidence 77765554321 22666665 3332 257777743
Q ss_pred -CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc
Q psy5792 159 -GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 159 -~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p 237 (377)
.+.|..|++..... . ..+++.+. ..+ .+.+.+.|++...++++..++........... .. ..--..|
T Consensus 198 ~~~~VsVID~~t~kv--v-~~I~v~g~---~~~--~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~-~~v~~~p 265 (426)
T 3c75_H 198 PAPAVGVVDLEGKTF--D-RMLDVPDC---YHI--FPASPTVFYMNCRDGSLARVDFADGETKVTNT---EV-FHTEDEL 265 (426)
T ss_dssp SSCEEEEEETTTTEE--E-EEEECCSE---EEE--EEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CC-CSCTTSC
T ss_pred CCCeEEEEECCCCeE--E-EEEEcCCc---eee--ccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---ee-eccCCCc
Confidence 45699998876633 1 12333221 122 22234566666666666666663222111100 00 0011123
Q ss_pred c--eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee------CC---CCCcee---EEEcCCCCeEEEEecC-----
Q psy5792 238 T--DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS------GG---VDQPSA---LAVDPESGYLFWSESG----- 298 (377)
Q Consensus 238 ~--~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~------~~---~~~P~~---iavdp~~g~lywtd~g----- 298 (377)
. .+++++..+.+|+... .+++.++++.+....++-. .. ...|.+ ++++|..++||+++..
T Consensus 266 ~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 266 LINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp BCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred eeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 2 3466777788888765 4799999998765433211 00 123555 8999999999999741
Q ss_pred ---CCCeEEEEecCCCCe-EEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccCC
Q psy5792 299 ---KIPLIARAGLDGKKQ-TILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 299 ---~~~~I~r~~ldG~~~-~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G~ 355 (377)
....|..+++.-... ..+--. ..|.+|+++..++ +||.+.. ..+.|..+|....
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~-~s~~VsVID~~t~ 403 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSA-GTQTLHIYDAATG 403 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTC
T ss_pred ccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcC-CCCeEEEEECCCC
Confidence 124688888875443 333222 3699999998888 9999998 8999999998744
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-09 Score=94.62 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=127.4
Q ss_pred ecCCC-CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 180 PLSKV-SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 180 ~~~~~-~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
|+.+. .++.|+++++.++.||.+....++|++++++|...+.+.. .+...++|||++. .+.+++++...++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l-------~g~~D~EGIa~~~-~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL-------DFVKDLETIEYIG-DNQFVISDERDYA 92 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC-------SSCSSEEEEEECS-TTEEEEEETTTTE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec-------CCCCChHHeEEeC-CCEEEEEECCCCc
Confidence 44544 5799999999899999866568899999999766555544 4567899999994 5667788888899
Q ss_pred EEEEEcCCCeE-E--EEeeCCC-CCc-----eeEEEcCCCCeEEEEecCCCCeEEEEe--cCCCCeEEEEe------cCC
Q psy5792 259 IEVARLTGQYR-Y--VLISGGV-DQP-----SALAVDPESGYLFWSESGKIPLIARAG--LDGKKQTILAQ------EII 321 (377)
Q Consensus 259 I~~~~~~g~~~-~--~l~~~~~-~~P-----~~iavdp~~g~lywtd~g~~~~I~r~~--ldG~~~~~l~~------~~~ 321 (377)
+.++.++.... . ......+ ..| .|||.||.++.||.+.......|++.+ +.+...+++-. ..+
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 99988765431 1 1111112 335 899999998899999865333888887 22223333311 125
Q ss_pred CCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEe
Q psy5792 322 MPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
..+.+|++|+.+++||+... ..+.+..++.+|.-+..+.+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~g~~~~~~~L 212 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSH-ESRALQEVTLVGEVIGEMSL 212 (255)
T ss_dssp SCCCEEEEETTTTEEEEEET-TTTEEEEECTTCCEEEEEEC
T ss_pred CCceeEEEcCCCCeEEEEEC-CCCeEEEEcCCCCEEEEEEc
Confidence 67999999999999999999 99999999999864444443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-08 Score=95.98 Aligned_cols=276 Identities=12% Similarity=0.086 Sum_probs=166.5
Q ss_pred ccccCCCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEE
Q psy5792 21 TLKPQSGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRS 83 (377)
Q Consensus 21 ~~~d~~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~ 83 (377)
.+-++.+.++|+++.. .+.|..+|.+.. ..++ .....|. |++ .+.++|++++ ..+.|..
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 4556788899999987 789999999877 5555 3345574 888 6778999985 2467999
Q ss_pred Ec-CCCCceEEEecC--------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 84 IN-LDGSNSTVLRNN--------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 84 ~~-~~g~~~~~~~~~--------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
+| .+++....+... ..|.++.+ +++. .++++
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~-spDG---------------------------------------k~lyV 153 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPDG---------------------------------------KTLLF 153 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-CTTS---------------------------------------SEEEE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEE-cCCC---------------------------------------CEEEE
Confidence 99 667665554321 13666665 3332 25777
Q ss_pred EeCC-CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCC
Q psy5792 155 SVNS-GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTP 233 (377)
Q Consensus 155 s~~~-~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~ 233 (377)
++.. .+.|..+++..... ... +++.+ .. ..+.. +.+.|++...++++..+.+....... ....... ..
T Consensus 154 an~~~~~~VsVID~~t~~v--v~t-I~v~g---~~-~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~--~~ 222 (386)
T 3sjl_D 154 YQFSPAPAVGVVDLEGKAF--KRM-LDVPD---CY-HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVF--HP 222 (386)
T ss_dssp EECSSSCEEEEEETTTTEE--EEE-EECCS---EE-EEEEE-ETTEEEEEETTSCEEEEECCSSSCCE-EEECCCC--SC
T ss_pred EEcCCCCeEEEEECCCCcE--EEE-EECCC---cc-eeecC-CCceeEEECCCCCEEEEECCCCCeEE-Eeeccee--cc
Confidence 7743 45699998877643 222 23322 11 11222 23333344455666666654322111 1100000 00
Q ss_pred CCCcc--eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC---------CCCCce---eEEEcCCCCeEEEEec-C
Q psy5792 234 VDQFT--DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG---------GVDQPS---ALAVDPESGYLFWSES-G 298 (377)
Q Consensus 234 ~~~p~--~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~---------~~~~P~---~iavdp~~g~lywtd~-g 298 (377)
-..|. ..+++...++++|... .+++.++++.+...+++-.- ....|. .+++|+..++||++.. +
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 11222 2466655677766544 47899999987654332110 011243 4889999999999863 1
Q ss_pred -------CCCeEEEEecCCCCe-EEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccCC
Q psy5792 299 -------KIPLIARAGLDGKKQ-TILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 299 -------~~~~I~r~~ldG~~~-~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G~ 355 (377)
...+|..+++....+ ..+... ..|.+|+++...+ +||.+.. ..+.|..++...+
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~-~~~~VsViD~~t~ 364 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALST-GDKTLYIHDAESG 364 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEET-TTTEEEEEETTTC
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcC-CCCeEEEEECCCC
Confidence 125788888865443 333322 3688999988775 7999998 8999999998743
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-08 Score=92.81 Aligned_cols=266 Identities=7% Similarity=-0.040 Sum_probs=168.8
Q ss_pred eEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCC-ceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCC----
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAA-QVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNA---- 98 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~-~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~---- 98 (377)
.++++....+.|..+|+... ..++. ..... .|.++++ .+.++|+++...+.|..++ .+|+....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 45677778899999998765 44443 12111 5889999 4458999998888999999 6676655444221
Q ss_pred --CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC-----------CCCeEEEE
Q psy5792 99 --GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN-----------SGYDIMGI 165 (377)
Q Consensus 99 --~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~-----------~~~~I~~~ 165 (377)
.|.++++ +++. ..++++.. ..+.|..+
T Consensus 81 ~~~~~~~~~-s~dg---------------------------------------~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 81 VKSLFGAAL-SPDG---------------------------------------KTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp EECTTCEEE-CTTS---------------------------------------SEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred cccccceEE-CCCC---------------------------------------CEEEEEecccccccccccccCceEEEE
Confidence 2444433 2221 24666531 12348888
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
++..... +..+.....+.++++++.++.||++ ++.|+.+++........+. .. ..+..+++.+.
T Consensus 121 d~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~-------~~-~~~~~~~~s~d 184 (337)
T 1pby_B 121 DAETLSR-----RKAFEAPRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKP-------IQ-SWEAETYAQPD 184 (337)
T ss_dssp ETTTTEE-----EEEEECCSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEEC-------ST-TTTTTTBCCCB
T ss_pred ECCCCcE-----EEEEeCCCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeee-------cc-ccCCCceeCCC
Confidence 8865422 2222233457788899888889998 4789999987543332232 11 11222345555
Q ss_pred CCeEEEEcCCCC-----------------------EEEEEEcCCCeEEEE-eeCCCCCceeEEEcCCCCeEEEEecCCCC
Q psy5792 246 AQNIYWSDPKEN-----------------------VIEVARLTGQYRYVL-ISGGVDQPSALAVDPESGYLFWSESGKIP 301 (377)
Q Consensus 246 ~~~lYwtd~~~~-----------------------~I~~~~~~g~~~~~l-~~~~~~~P~~iavdp~~g~lywtd~g~~~ 301 (377)
+..||++....+ .|.+.++.......+ .......|.+++++|...+||.++ .
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----~ 260 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY----N 260 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE----S
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC----C
Confidence 666666654433 467788876544322 222345788999999888999883 5
Q ss_pred eEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 302 LIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 302 ~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
.|...+++.......+.. -..|.++++++.+++||.+ . ..+.|..++...+...
T Consensus 261 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~-~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLG-G-ALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEE-S-BSSEEEEEETTTCCEE
T ss_pred eEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEE-c-CCCcEEEEECcCCcEE
Confidence 888888875544333433 3578999999888889887 5 5789999998755433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-07 Score=90.75 Aligned_cols=275 Identities=12% Similarity=0.037 Sum_probs=166.7
Q ss_pred ccCCCCeEEEEeC-CCC---cEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc
Q psy5792 23 KPQSGPFVYGVKT-LSH---SLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN 85 (377)
Q Consensus 23 ~d~~~~~ly~~d~-~~~---~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~ 85 (377)
.++...++|+++. ..+ .|..+|++.. ..++ +....| ++++ .+.+||+++. ..+.|..+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i---~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEe---cCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 3455678999997 555 7899998766 4444 445568 9999 6779999984 246688888
Q ss_pred -CCCCceEEEecC--------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe
Q psy5792 86 -LDGSNSTVLRNN--------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156 (377)
Q Consensus 86 -~~g~~~~~~~~~--------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~ 156 (377)
.+++....+.-. ..|.++.+ +++. .+|++++
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~-spDG---------------------------------------~~l~v~n 143 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNAN-TPNN---------------------------------------ADLLFFQ 143 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEE-CCCC---------------------------------------CEEEEEe
Confidence 555554443321 12555554 3332 2677776
Q ss_pred CC-CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC
Q psy5792 157 NS-GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD 235 (377)
Q Consensus 157 ~~-~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~ 235 (377)
.. .+.|..++ ..... ...++++ +..+.+.+...+.|++....+++..++..|.....+.. ... ..-.
T Consensus 144 ~~~~~~v~viD-~t~~~--~~~~i~~-----~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~--~~~--~~~~ 211 (373)
T 2mad_H 144 FAAGPAVGLVV-QGGSS--DDQLLSS-----PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV--GAM--LTAA 211 (373)
T ss_pred cCCCCeEEEEE-CCCCE--EeEEcCC-----CceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEec--ccc--ccCC
Confidence 43 34688888 65533 1111222 12233445567788888888888888883322111110 000 0001
Q ss_pred Cc--ceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee---------CCCCCcee---EEEcCCCCeEEEEecC---
Q psy5792 236 QF--TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS---------GGVDQPSA---LAVDPESGYLFWSESG--- 298 (377)
Q Consensus 236 ~p--~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~---------~~~~~P~~---iavdp~~g~lywtd~g--- 298 (377)
.| ...+++...+.+||.. ..+++.++++.+...+++-. .....|.+ ++++|..++||++...
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred cceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 12 1233444466777766 45689999987653322111 01123555 8999999999998531
Q ss_pred -----CCCeEEEEecCCCCe-EEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccCCce
Q psy5792 299 -----KIPLIARAGLDGKKQ-TILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 299 -----~~~~I~r~~ldG~~~-~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
....|..+++..... ..+ .. -..|.+++++..++ +||.+.. ..+.|..++......
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~i-~~-g~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQI-SL-GHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQ 353 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEEE-EC-CCCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCE
Confidence 135799998875443 344 32 24699999998888 7888887 789999999885433
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-09 Score=98.40 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=114.9
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEE-EeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--------
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI-IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-------- 256 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i-~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-------- 256 (377)
.+.+++++..+++||+++.. +.|++++.+| ..+.+ ... ........|.+|++|+ .++||+++...
T Consensus 72 ~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~g-~~~~~~~~~---~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 72 IPAGCQCDRDANQLFVADMR-LGLLVVQTDG-TFEEIAKKD---SEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp CEEEEEECSSSSEEEEEETT-TEEEEEETTS-CEEECCSBC---TTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCC
T ss_pred CCceEEEecCCCcEEEEECC-CCEEEEeCCC-CEEEEEecc---CCCccccCCcCEEECC-CCCEEEEecCccccccccc
Confidence 47788888754899999864 4899999884 33333 220 0001234599999996 67899998764
Q ss_pred -------CEEEEEEcCCCeEEEEeeCCCCCceeEEEc----CCCCeEEEEecCCCCeEEEEecCCCCe----EEEEec--
Q psy5792 257 -------NVIEVARLTGQYRYVLISGGVDQPSALAVD----PESGYLFWSESGKIPLIARAGLDGKKQ----TILAQE-- 319 (377)
Q Consensus 257 -------~~I~~~~~~g~~~~~l~~~~~~~P~~iavd----p~~g~lywtd~g~~~~I~r~~ldG~~~----~~l~~~-- 319 (377)
+.|.+.+.+|+... +.. ....|.+++++ |.++.||+++.. ..+|.+.++++.+. +.+..-
T Consensus 146 ~~~~~~~~~l~~~~~~g~~~~-~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~-~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTDGQMIQ-VDT-AFQFPNGIAVRHMNDGRPYQLIVAETP-TKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp BTTSSSCEEEEEECTTSCEEE-EEE-EESSEEEEEEEECTTSCEEEEEEEETT-TTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred ccccCCCCeEEEECCCCCEEE-ecc-CCCCcceEEEecccCCCCCEEEEEECC-CCeEEEEECCCCCccccceEEEECCC
Confidence 68999998866543 333 35679999999 866689999975 58999998763221 122221
Q ss_pred CC-CCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc-CCceEEE
Q psy5792 320 II-MPIKDITLDRKNKRVYWCYSVGSNVLESMDYS-GGSKMQL 360 (377)
Q Consensus 320 ~~-~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~-G~~~~~~ 360 (377)
.. ..|.++++|. +++||+++. ..+.|.+++.+ |.....+
T Consensus 223 ~~~~~p~~i~~d~-~G~l~v~~~-~~~~i~~~d~~~g~~~~~~ 263 (314)
T 1pjx_A 223 THEGGADGMDFDE-DNNLLVANW-GSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp CSSCEEEEEEEBT-TCCEEEEEE-TTTEEEEECTTCBSCSEEE
T ss_pred CCCCCCCceEECC-CCCEEEEEc-CCCEEEEEcCCCCcEeEEE
Confidence 11 5799999995 679999999 88999999988 5433433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-07 Score=95.75 Aligned_cols=274 Identities=9% Similarity=-0.007 Sum_probs=179.4
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC---CCCceEEEecCCC
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL---DGSNSTVLRNNAG 99 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~---~g~~~~~~~~~~~ 99 (377)
..++|++....+.|..+|.+.. ..++ .....|.++++ .+.++|+++. .+.|..+|. +++....+..+..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i---~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVL---DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEE---eCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecCCC
Confidence 4689999999999999999877 4455 44557889999 5678999974 578999994 5655555555445
Q ss_pred ceeEEeee---cCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeE
Q psy5792 100 ISDFILFS---VNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQ 176 (377)
Q Consensus 100 p~~i~v~~---~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~ 176 (377)
|.++.+.. ++.+ ++++++...+.+..++...... ..
T Consensus 242 P~~ia~s~~~~pDGk---------------------------------------~l~v~n~~~~~v~ViD~~t~~~--~~ 280 (567)
T 1qks_A 242 ARSIETSKMEGWEDK---------------------------------------YAIAGAYWPPQYVIMDGETLEP--KK 280 (567)
T ss_dssp EEEEEECCSTTCTTT---------------------------------------EEEEEEEETTEEEEEETTTCCE--EE
T ss_pred CceeEEccccCCCCC---------------------------------------EEEEEEccCCeEEEEECCCCcE--EE
Confidence 88888742 3332 5777765555687777654432 11
Q ss_pred EEEecCC----------CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 177 VLGPLSK----------VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 177 ~~~~~~~----------~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
.+++.+ ..++.++........++++....++|..++........+... ..-..|.++++|+.+
T Consensus 281 -~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i------~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 281 -IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI------SAERFLHDGGLDGSH 353 (567)
T ss_dssp -EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE------ECCSSEEEEEECTTS
T ss_pred -EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee------eccccccCceECCCC
Confidence 122211 125667776666667777777789999998864322222210 122358899999988
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeC--CCCCc-eeEE-EcCCCCeEEEEecCCCCeEEEEecCCCC--------eE
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISG--GVDQP-SALA-VDPESGYLFWSESGKIPLIARAGLDGKK--------QT 314 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~--~~~~P-~~ia-vdp~~g~lywtd~g~~~~I~r~~ldG~~--------~~ 314 (377)
+.+|.++...++|.+.++........+.. ...+| ++.. ++|..+.+|.+.......|..++.+... .+
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 99999999899999999987654444443 23444 4665 5887788887764225789999887521 22
Q ss_pred EEEecCCCCceEEEEeCCCCEEEEEEeCC-----CCeEEEEEcc
Q psy5792 315 ILAQEIIMPIKDITLDRKNKRVYWCYSVG-----SNVLESMDYS 353 (377)
Q Consensus 315 ~l~~~~~~~P~glalD~~~~~LYw~d~~~-----~~~i~~~~~~ 353 (377)
.+-... ..+..+...+.+.+||+..... .+.|..++.+
T Consensus 434 ~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 434 SFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp EEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred EEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 222211 2334577777667777655301 3478888876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.6e-08 Score=96.57 Aligned_cols=278 Identities=12% Similarity=0.009 Sum_probs=183.3
Q ss_pred cccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC---CCCceEEE
Q psy5792 22 LKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL---DGSNSTVL 94 (377)
Q Consensus 22 ~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~---~g~~~~~~ 94 (377)
++++ ++++|++....+.|..+|.+.. ..++- .+. .|+++++ .+.+||.++.. +.|..++. +++....+
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~--~g~-~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVID--TGY-AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEE--CST-TEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEE
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEe--cCc-ccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEE
Confidence 4665 4589999999999999998766 55553 222 3899988 66789999976 88999986 44444555
Q ss_pred ecCCCceeEEeeec----CCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 95 RNNAGISDFILFSV----NSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 95 ~~~~~p~~i~v~~~----~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..|.++++ ++ +.+ ++++++...+.|..++....
T Consensus 219 ~~g~~p~~va~-sp~~~~dg~---------------------------------------~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 219 KIGIEARSVES-SKFKGYEDR---------------------------------------YTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp ECCSEEEEEEE-CCSTTCTTT---------------------------------------EEEEEEEESSEEEEEETTTC
T ss_pred ecCCCcceEEe-CCCcCCCCC---------------------------------------EEEEEEccCCeEEEEecccc
Confidence 54334888875 44 332 46666643445887876554
Q ss_pred CceeeEEEEecC----------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEE-EEeccccCCCCCCCCcc
Q psy5792 171 ESKVTQVLGPLS----------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-REN-IIEYVETGDPTPVDQFT 238 (377)
Q Consensus 171 ~~~~~~~~~~~~----------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~-i~~~~~~~~~~~~~~p~ 238 (377)
.. .. .++.. ...++.++.+.+.+..+|++....++|..++..... ... .+. .-..|.
T Consensus 259 ~~--~~-~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--------~~~~~~ 327 (543)
T 1nir_A 259 EP--KQ-IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--------AAPFLH 327 (543)
T ss_dssp CE--EE-EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--------CCSSCC
T ss_pred cc--ce-eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--------cCcCcc
Confidence 33 12 22221 123678899998889999999999999999986432 221 122 224599
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC-CCCCc-eeEE-EcCCCCeEEEEecCCCCeEEEEecCC-----
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQP-SALA-VDPESGYLFWSESGKIPLIARAGLDG----- 310 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~-~~~~P-~~ia-vdp~~g~lywtd~g~~~~I~r~~ldG----- 310 (377)
++++++.++.+|.++...++|.+.++........+.. ...+| ++.. ++|..|.+|.+.......|...+++.
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 9999998888999998889999999987655444443 22333 3554 47877999988752247888888774
Q ss_pred ---CCeEEEEecCCCCceEEEEeCCCCEEEEEEeCC-----CCeEEEEEccCCc
Q psy5792 311 ---KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVG-----SNVLESMDYSGGS 356 (377)
Q Consensus 311 ---~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~-----~~~i~~~~~~G~~ 356 (377)
+..+++-.. -..+..+++.+.+++||...... .++|..++.+...
T Consensus 408 ~~~~~v~~l~~~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 408 YAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TBTSEEEEEECS-CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred hcCeEEEEEEcC-CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 222333221 13456788887777777654101 3478888876443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-09 Score=98.43 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=156.7
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCC-------CceEEEEE----ECCeEEEE-cCCCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDA-------AQVVAAVF----YKGRIIYS-DANDGNI 81 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~-------~~p~~lav----~~~~ly~t-d~~~~~I 81 (377)
--+|.|..-|...+++|+.+...+.|.++++++. ...+. .+.+ .+|.||.+ ..++|++. |.. .
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~--~- 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA--K- 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET--T-
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-cCCccccCCCcceeeEEEEeccCCCCcEEEEEccc--c-
Confidence 3589999999999999999999999999999966 44442 2332 37899999 45678773 310 0
Q ss_pred EEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 82 RSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
..+..|+.. .+.. .
T Consensus 88 -af~~~g~~~------~g~~-----------------------------------------------------------~ 101 (334)
T 2p9w_A 88 -SFNFADQSS------HGAS-----------------------------------------------------------S 101 (334)
T ss_dssp -TTCTTSCCS------SSCC-----------------------------------------------------------E
T ss_pred -ccccccccc------CCCC-----------------------------------------------------------E
Confidence 000111110 0000 1
Q ss_pred EEEEEcC----CCCceeeEEEEecC------------CCCceEEEEEECCCCEEEEEEcCC-CcEEEEEcCCCCcEEEEe
Q psy5792 162 IMGIKYN----KNESKVTQVLGPLS------------KVSLAAKVDFHAAEDYIYWVDIDH-GTISRTHRDGTGRENIIE 224 (377)
Q Consensus 162 I~~~~l~----~~~~~~~~~~~~~~------------~~~~~~~l~~d~~~~~ly~sd~~~-~~I~~~~~~G~~~~~i~~ 224 (377)
+.++++. +... ....+. ....+..+++|. ++++|+++... +.|+|++.+|........
T Consensus 102 v~~~Dl~~~~tg~~~----~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 102 FHSFNLPLSENSKPV----WSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp EEEEESSCCTTCCCS----EEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred EEEEcCCcCCCCCEE----EEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 4444444 1111 111111 112477899997 79999999988 999999999985544432
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE-EEEee--C---CCCCceeE-EEcCCCCeE-EEEe
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR-YVLIS--G---GVDQPSAL-AVDPESGYL-FWSE 296 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~-~~l~~--~---~~~~P~~i-avdp~~g~l-ywtd 296 (377)
. ..-......+.||++++.+..|+..+. .++|.++++....+ .+-+. . .+..|.+| ++.. +|.+ ++++
T Consensus 177 ~--~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~-~G~vllV~~ 252 (334)
T 2p9w_A 177 E--SGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV-GNESVLVGA 252 (334)
T ss_dssp C--CCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE-TTEEEEEEE
T ss_pred c--CCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCccccccccc-CCEEEEEEc
Confidence 0 100112334889999998888888888 89999999984332 12122 1 36778995 6664 5555 9998
Q ss_pred cCCCCeEEEEecCCCCeE-EEEec---CCCCceEEEEe-----CCCCEEEEEEeCCC
Q psy5792 297 SGKIPLIARAGLDGKKQT-ILAQE---IIMPIKDITLD-----RKNKRVYWCYSVGS 344 (377)
Q Consensus 297 ~g~~~~I~r~~ldG~~~~-~l~~~---~~~~P~glalD-----~~~~~LYw~d~~~~ 344 (377)
.. +..+...+.|| .++ .+... .+. +.|++.+ ..+++||.++. ..
T Consensus 253 ~~-~~~~~l~S~Dg-W~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~-~f 305 (334)
T 2p9w_A 253 RA-PYAISFRSWDN-WKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSA-FF 305 (334)
T ss_dssp ET-TEEEEEECSST-TSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEEC-CG
T ss_pred CC-CCEEEEECCCC-cceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEee-ec
Confidence 64 45666677787 433 22221 233 7899988 45799999997 43
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.2e-08 Score=86.75 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=104.8
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
..|++++ +++||.++...+.+++++++.-....-+. .. ..+.|++-| ++.||.+|. .++|...++..
T Consensus 89 geGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-------~~-~eG~glt~d--g~~L~~SdG-s~~i~~iDp~T 155 (262)
T 3nol_A 89 GEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFN-------YD-GEGWGLTHN--DQYLIMSDG-TPVLRFLDPES 155 (262)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEE-------CS-SCCCCEEEC--SSCEEECCS-SSEEEEECTTT
T ss_pred eeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEE-------CC-CCceEEecC--CCEEEEECC-CCeEEEEcCCC
Confidence 4556666 78999999999999999987433222222 11 256677766 789999996 68999999986
Q ss_pred Ce-EEEE-eeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEEEecC-----------CCCceEEEE
Q psy5792 267 QY-RYVL-ISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEI-----------IMPIKDITL 329 (377)
Q Consensus 267 ~~-~~~l-~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~-----------~~~P~glal 329 (377)
.. ...+ +.. ....++.+.. .+|.||...|. ...|.+++..-.. ...+-... ..-|+|||+
T Consensus 156 ~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 156 LTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp CSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred CeEEEEEEeccCCccccccceeEE--ECCEEEEEEcc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 43 3222 221 1234455655 37899999985 6899999875433 33333221 236899999
Q ss_pred eCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 330 DRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
|+.+++||++-. .=.+++.+.+.
T Consensus 233 dp~~~~lfVTGK-~Wp~~~ev~~~ 255 (262)
T 3nol_A 233 DKEHHRLFVTGK-LWPKVFEITLT 255 (262)
T ss_dssp ETTTTEEEEEET-TCSEEEEEEEE
T ss_pred cCCCCEEEEECC-CCCceEEEEEe
Confidence 999999999998 77888888764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-08 Score=96.67 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=150.4
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC----CCCceEEEEE--ECCeEEEEcCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP----DAAQVVAAVF--YKGRIIYSDAN 77 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~----~~~~p~~lav--~~~~ly~td~~ 77 (377)
...| ++++++++++||.++. ..+.|..+|+... ..++-... ....|.+|++ .+.+||+++..
T Consensus 50 g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~ 128 (361)
T 2oiz_A 50 AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS 128 (361)
T ss_dssp CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES
T ss_pred CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC
Confidence 4578 9999999999999974 2456999998765 55553111 2457899999 67799999876
Q ss_pred -CCceEEEc-CCCCceEE-EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 78 -DGNIRSIN-LDGSNSTV-LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 78 -~~~I~~~~-~~g~~~~~-~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
.+.|..++ .+++.... +... +..++.++.... ..++
T Consensus 129 ~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~----------------------------------------~~~~ 167 (361)
T 2oiz_A 129 PATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRP----------------------------------------RSFM 167 (361)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSS----------------------------------------SEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCC----------------------------------------eeEE
Confidence 67899999 55544433 2211 111222211110 0111
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEE---EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC--
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVL---GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-- 229 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~---~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-- 229 (377)
+....|.+..++++..+.. .... ..+.....+..+...+....+++... .+.|+.+++.+.....+.......
T Consensus 168 ~~~~dg~~~~v~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~ 245 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKV-ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY-YGNVYSADFSGDEVKVDGPWSLLNDE 245 (361)
T ss_dssp EEETTSSEEEEEECTTSSE-EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT-TSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred EECCCCcEEEEEECCCCcE-eeeccccceEcCCCCceEEEecccCCEEEEEeC-CCeEEEEEecCCCceecccccccCcc
Confidence 2111223444444332110 0000 00111112222222222456666653 467888887654333221100000
Q ss_pred CCCCCCCcce---EEEeccCCeEEEEcC----------CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 230 DPTPVDQFTD---IAVDWIAQNIYWSDP----------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 230 ~~~~~~~p~~---iavD~~~~~lYwtd~----------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
.......|.+ +++++.++.+|++.. ..++|.+.++.......-+..+. |.+|+++|...+||.+.
T Consensus 246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 0000012444 999988899999864 13589999998765443344333 99999999999999887
Q ss_pred cCCCCeEEEEecCCCCeEEEEe--cCCCCceEEEEeCCC
Q psy5792 297 SGKIPLIARAGLDGKKQTILAQ--EIIMPIKDITLDRKN 333 (377)
Q Consensus 297 ~g~~~~I~r~~ldG~~~~~l~~--~~~~~P~glalD~~~ 333 (377)
. ..|...++.....+.+-. ..=..|.++++++.+
T Consensus 324 ~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 324 G---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp S---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred C---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 4 678888776441122222 213579999998654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-09 Score=92.52 Aligned_cols=191 Identities=12% Similarity=0.059 Sum_probs=128.6
Q ss_pred ccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEe
Q psy5792 19 ASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR 95 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~ 95 (377)
.|+.++ +++||.+....++|.++|++.. .++++ .......||++.+++||..+|..+.+.++| .+++.
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~----- 128 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR----- 128 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-----
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-----
Confidence 588877 4799999999999999999765 44444 333334568999999999999999999888 44433
Q ss_pred cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceee
Q psy5792 96 NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVT 175 (377)
Q Consensus 96 ~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~ 175 (377)
+..+...+
T Consensus 129 ------------------------------------------------------------------~~ti~~~~------ 136 (268)
T 3nok_A 129 ------------------------------------------------------------------ERTTRYSG------ 136 (268)
T ss_dssp ------------------------------------------------------------------EEEEECSS------
T ss_pred ------------------------------------------------------------------EEEEeCCC------
Confidence 23333221
Q ss_pred EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC
Q psy5792 176 QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 176 ~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~ 255 (377)
.+.|++.| +++||.+| .+++|+.++...-....-+. -...+..+..+..| +|.++.||.....
T Consensus 137 ----------eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~--V~~~g~~v~~lNeL--e~~dG~lyanvw~ 199 (268)
T 3nok_A 137 ----------EGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQ--VKLRGQPVELINEL--ECANGVIYANIWH 199 (268)
T ss_dssp ----------CCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEE--CEETTEECCCEEEE--EEETTEEEEEETT
T ss_pred ----------ceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEE--eCCCCccccccccc--EEeCCEEEEEECC
Confidence 13455556 67888888 57888888876432221111 00000122334444 4558999999888
Q ss_pred CCEEEEEEcCCCeEEEEeeC-------------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 256 ENVIEVARLTGQYRYVLISG-------------GVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~-------------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.+.|.++++........+.. ....|.|||.||.++.||+|-.. =++++++.+
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~-Wp~~~ev~~ 264 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL-WPRLFEVRL 264 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT-CSEEEEEEE
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC-CCceEEEEE
Confidence 89999999976544332221 12478999999999999999742 478888776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-08 Score=96.35 Aligned_cols=267 Identities=7% Similarity=0.030 Sum_probs=155.4
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC-----CCCceEEEEE--ECCeEEEEcC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP-----DAAQVVAAVF--YKGRIIYSDA 76 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~-----~~~~p~~lav--~~~~ly~td~ 76 (377)
...|. +++++++.+||+++. ..+.|..+|.... ..+|.... ....|+++++ .+.+||+++.
T Consensus 78 G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~ 156 (386)
T 3sjl_D 78 GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 156 (386)
T ss_dssp CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc
Confidence 35785 999999999999985 3567999999887 55553111 1357999999 6778999997
Q ss_pred C-CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 77 N-DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 77 ~-~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
. .+.|..+| .+++....+.... . ..++..... .|+
T Consensus 157 ~~~~~VsVID~~t~~vv~tI~v~g-~--~~~~P~g~~--------------------------------------~~~-- 193 (386)
T 3sjl_D 157 SPAPAVGVVDLEGKAFKRMLDVPD-C--YHIFPTAPD--------------------------------------TFF-- 193 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEEECCS-E--EEEEEEETT--------------------------------------EEE--
T ss_pred CCCCeEEEEECCCCcEEEEEECCC-c--ceeecCCCc--------------------------------------eeE--
Confidence 5 68899999 6776665553211 1 111111110 011
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEE-EecCCCCceEE--EEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecc---cc
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVL-GPLSKVSLAAK--VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYV---ET 228 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~-~~~~~~~~~~~--l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~---~~ 228 (377)
+....|++..++++..+.- .... ..+.....+.. ..++..+++++|... .++|+.+++.+...+.+-.-. ..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccc
Confidence 1111122444444331110 0000 01111111221 356666788777654 689999999765443321100 00
Q ss_pred CCCCCCCCcc---eEEEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC-eEEEE
Q psy5792 229 GDPTPVDQFT---DIAVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG-YLFWS 295 (377)
Q Consensus 229 ~~~~~~~~p~---~iavD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~lywt 295 (377)
.. ..-..|. .+++|...++||++... .++|.++++....+..-+.. ...|.+|++++... +||.+
T Consensus 272 ~~-~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 272 ER-ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp HH-HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred cc-cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEE
Confidence 00 0001233 38999999999998641 25899999987654322222 23689999999765 78888
Q ss_pred ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC
Q psy5792 296 ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331 (377)
Q Consensus 296 d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~ 331 (377)
+++ ...|..++........-+.. ...|+.|.+..
T Consensus 350 n~~-~~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~ 383 (386)
T 3sjl_D 350 STG-DKTLYIHDAESGEELRSVNQ-LGHGPQVITTA 383 (386)
T ss_dssp ETT-TTEEEEEETTTCCEEEEECC-CCSSCCEEEEC
T ss_pred cCC-CCeEEEEECCCCcEEEEecC-CCCCceeEECC
Confidence 875 67888888753333222332 57888887753
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-08 Score=94.88 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=150.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc--CCcEEEEEeCCCCCceEEEEE-ECCe---EEEEc-------C-----C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI--EVKVAKVVSMPDAAQVVAAVF-YKGR---IIYSD-------A-----N 77 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~--dG~~~~i~~~~~~~~p~~lav-~~~~---ly~td-------~-----~ 77 (377)
..|.++++++++++||.++.. .|...++ +|+...+........|..+++ .+++ +|.++ . .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 368999999999899988876 7888887 455322221111124666777 3343 34454 1 3
Q ss_pred CCceEEEc--CCCCceEEEec----CC-CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCc
Q psy5792 78 DGNIRSIN--LDGSNSTVLRN----NA-GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISD 150 (377)
Q Consensus 78 ~~~I~~~~--~~g~~~~~~~~----~~-~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~ 150 (377)
.+.+..++ .+|+....+.. .. .|.++++ +|+. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-spdG---------------------------------------~ 157 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF-DPTE---------------------------------------T 157 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE-CTTS---------------------------------------S
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEE-CCCC---------------------------------------C
Confidence 45565555 35654333321 11 2555554 3332 2
Q ss_pred EEEEEeCCCCeEEEEEcC-CCCceeeEEE--EecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcC---CCCc---E
Q psy5792 151 FILFSVNSGYDIMGIKYN-KNESKVTQVL--GPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD---GTGR---E 220 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~-~~~~~~~~~~--~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~---G~~~---~ 220 (377)
++++++...+.|+.++++ .... ..+ ..... ...|.++++++.++.||+++...+.|..++.+ |... +
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~---~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 234 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEV---ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCE---EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCE---EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence 577776544569988887 3322 111 12222 45699999999888999999877888877765 2211 1
Q ss_pred EEEeccccCCCCCC---C-------CcceEE-EeccCCeEEEEcCCCC-----EEEEEEcC--CCeEEE--EeeCCCCCc
Q psy5792 221 NIIEYVETGDPTPV---D-------QFTDIA-VDWIAQNIYWSDPKEN-----VIEVARLT--GQYRYV--LISGGVDQP 280 (377)
Q Consensus 221 ~i~~~~~~~~~~~~---~-------~p~~ia-vD~~~~~lYwtd~~~~-----~I~~~~~~--g~~~~~--l~~~~~~~P 280 (377)
.+.. .+.+. . .|.+++ +++.++.||.++...+ +|.+.+++ |+.... .+......|
T Consensus 235 ~~~~-----~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~ 309 (365)
T 1jof_A 235 SFPL-----IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG 309 (365)
T ss_dssp EEES-----SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT
T ss_pred eEEc-----CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc
Confidence 1211 00111 1 488999 9998889999987554 88888874 443322 233334569
Q ss_pred eeEEEcC---CCCeEEEEecCCCCeEEEEecCCC
Q psy5792 281 SALAVDP---ESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 281 ~~iavdp---~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
++++++| ..++||+++.. ...|...++++.
T Consensus 310 ~~~a~sp~~~dg~~l~v~~~~-~~~v~v~~~~~~ 342 (365)
T 1jof_A 310 HSNAVSPCPWSDEWMAITDDQ-EGWLEIYRWKDE 342 (365)
T ss_dssp TCCCEEECTTCTTEEEEECSS-SCEEEEEEEETT
T ss_pred ccceecCCCcCCCEEEEEEcC-CCeEEEEEEchh
Confidence 9999999 68899999864 467777777665
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=92.25 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=124.1
Q ss_pred ccccccCCCCeEEEEeCCC--CcEEEEEcCCc--EEEEEeCCCCCce--EEEEEECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 19 ASTLKPQSGPFVYGVKTLS--HSLHYVNIEVK--VAKVVSMPDAAQV--VAAVFYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~~--~~I~~~~~dG~--~~~i~~~~~~~~p--~~lav~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.|++++ +++||...... ..|.++|++.. .+++. ....+ .||++.+++||..+|..+.+.++| .+++..
T Consensus 46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIE---LGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEe---cCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 788887 46999998764 48999999766 55553 23344 558889999999999999999888 455433
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
..+...+
T Consensus 121 -----------------------------------------------------------------------~ti~~~~-- 127 (262)
T 3nol_A 121 -----------------------------------------------------------------------RSFNYDG-- 127 (262)
T ss_dssp -----------------------------------------------------------------------EEEECSS--
T ss_pred -----------------------------------------------------------------------EEEECCC--
Confidence 2332221
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
...|++.| +++||.+|. +++|+.++...-....-+.- ......+..++.|. |.++.||.
T Consensus 128 --------------eG~glt~d--g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V--~~~g~~~~~lNELe--~~~G~lya 186 (262)
T 3nol_A 128 --------------EGWGLTHN--DQYLIMSDG-TPVLRFLDPESLTPVRTITV--TAHGEELPELNELE--WVDGEIFA 186 (262)
T ss_dssp --------------CCCCEEEC--SSCEEECCS-SSEEEEECTTTCSEEEEEEC--EETTEECCCEEEEE--EETTEEEE
T ss_pred --------------CceEEecC--CCEEEEECC-CCeEEEEcCCCCeEEEEEEe--ccCCccccccceeE--EECCEEEE
Confidence 12344444 677777773 56777777763222111110 00001122344444 45899999
Q ss_pred EcCCCCEEEEEEcCCCeEEEEee-CC-----------CCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 252 SDPKENVIEVARLTGQYRYVLIS-GG-----------VDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 252 td~~~~~I~~~~~~g~~~~~l~~-~~-----------~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
.....+.|.++++........+. .+ ...|.|||.||.++.||+|-.. =++++++.+.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~-Wp~~~ev~~~ 255 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL-WPKVFEITLT 255 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT-CSEEEEEEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC-CCceEEEEEe
Confidence 99888999999997655433333 21 2468999999999999999743 4788887653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-08 Score=90.25 Aligned_cols=275 Identities=13% Similarity=0.055 Sum_probs=161.2
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
++|+++.. ++++|++....+.|..+|+++. ..++- ......|.++++ .+.++|+++...+.|..++ .+|+...
T Consensus 2 ~~g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 2 DTGPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp --CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEe-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 56777775 5789999999999999999766 44442 222226889999 3457999998889999999 5565544
Q ss_pred EEecCC------C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-------
Q psy5792 93 VLRNNA------G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS------- 158 (377)
Q Consensus 93 ~~~~~~------~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~------- 158 (377)
.+.... . |.++.+ +++. ..++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-spdg---------------------------------------~~l~~~~~~~~~~~~~ 119 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAI-SPDG---------------------------------------KEVYATVNPTQRLNDH 119 (349)
T ss_dssp EEESCCSTTEEEECSSCEEE-CTTS---------------------------------------SEEEEEEEEEEECSSC
T ss_pred EEEcccccccccccccceEE-CCCC---------------------------------------CEEEEEcccccccccc
Confidence 443211 1 344443 2221 245555522
Q ss_pred ----CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC---
Q psy5792 159 ----GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP--- 231 (377)
Q Consensus 159 ----~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~--- 231 (377)
.+.|..+++..... ...+........+.++++++.+. +|+++ +.|+.+++........+.......+
T Consensus 120 ~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 193 (349)
T 1jmx_B 120 YVVKPPRLEVFSTADGLE--AKPVRTFPMPRQVYLMRAADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYS 193 (349)
T ss_dssp EEECCCEEEEEEGGGGGG--BCCSEEEECCSSCCCEEECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred cccCCCeEEEEECCCccc--cceeeeccCCCcccceeECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCcccc
Confidence 23488888865221 01111112223577888888666 88753 3488888764332222220000000
Q ss_pred -----------C---CCCCcceEEEecc---------CCeEEE-EcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 232 -----------T---PVDQFTDIAVDWI---------AQNIYW-SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 232 -----------~---~~~~p~~iavD~~---------~~~lYw-td~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
. .+..|.++++... ....|+ .+...+++...+++ .....|.+++++|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp 264 (349)
T 1jmx_B 194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSP 264 (349)
T ss_dssp CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECS
T ss_pred CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecC
Confidence 0 0003445555421 122333 34444444444331 1345689999999
Q ss_pred -CCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 288 -ESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 288 -~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
...+||.+ ..+|...++........+.. -..|.++++++.+++||.+. ..+.|...+.....
T Consensus 265 ~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 265 KDPNQIYGV----LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGG--TFNDLAVFNPDTLE 327 (349)
T ss_dssp SCTTEEEEE----ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEES--BSSEEEEEETTTTE
T ss_pred CCCCEEEEE----cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEec--CCCeEEEEeccccc
Confidence 88899988 25899998876544333333 25688999998888899864 45899999987543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-09 Score=101.86 Aligned_cols=247 Identities=9% Similarity=0.075 Sum_probs=149.1
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC------CCCceEEEEE--ECCeEEEEc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP------DAAQVVAAVF--YKGRIIYSD 75 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~------~~~~p~~lav--~~~~ly~td 75 (377)
...| ++++++++++||+++. ..+.|..+|+... ..+|.. . ....|.++++ .+.+||+++
T Consensus 118 G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v-~g~~r~~~g~~P~~~~~spDGk~lyV~n 195 (426)
T 3c75_H 118 GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL-PDAPRFLVGTYQWMNALTPDNKNLLFYQ 195 (426)
T ss_dssp CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-TTCCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC-CCccccccCCCcceEEEcCCCCEEEEEe
Confidence 4589 9999999999999986 4678999999776 555531 2 1357899999 677999999
Q ss_pred CC-CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 76 AN-DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 76 ~~-~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
.. .+.|..+| .+++....+.-. ....++..... .+
T Consensus 196 ~~~~~~VsVID~~t~kvv~~I~v~---g~~~~~p~g~~----------------------------------------~~ 232 (426)
T 3c75_H 196 FSPAPAVGVVDLEGKTFDRMLDVP---DCYHIFPASPT----------------------------------------VF 232 (426)
T ss_dssp CSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEETT----------------------------------------EE
T ss_pred cCCCCeEEEEECCCCeEEEEEEcC---CceeeccCCCc----------------------------------------EE
Confidence 75 68899999 666665544321 11111111100 11
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEE-EecCCCCce--EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVL-GPLSKVSLA--AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~-~~~~~~~~~--~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
++....|++..+++..... .... ..+.....+ ..+.+....+.+|++.. .++++.+++.+.....+... ....
T Consensus 233 v~~~~dG~~~~V~~~~~~v--~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~-~~~~ 308 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGET--KVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPI-EALT 308 (426)
T ss_dssp EEEETTSSEEEEECCTTCC--EEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCE-ESSC
T ss_pred EEEcCCCCEEEEECCCCcE--EEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeee-eecc
Confidence 2221222355555522211 0000 001111112 22455666788888764 57899998875432221110 0000
Q ss_pred CC--CC-CCcce---EEEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC-eEEE
Q psy5792 231 PT--PV-DQFTD---IAVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG-YLFW 294 (377)
Q Consensus 231 ~~--~~-~~p~~---iavD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~lyw 294 (377)
.. .. ..|.+ +++++.+++||+++.. .++|.++++.......-+.. ...|.+|+++|... ++|.
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEE
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEE
Confidence 00 00 12555 8999989999999742 35799999987653322222 23599999999888 8999
Q ss_pred EecCCCCeEEEEecCCCC
Q psy5792 295 SESGKIPLIARAGLDGKK 312 (377)
Q Consensus 295 td~g~~~~I~r~~ldG~~ 312 (377)
+.++ ...|..+++..-.
T Consensus 388 ~n~~-s~~VsVID~~t~k 404 (426)
T 3c75_H 388 LSAG-TQTLHIYDAATGE 404 (426)
T ss_dssp EETT-TTEEEEEETTTCC
T ss_pred EcCC-CCeEEEEECCCCC
Confidence 9975 6899999986543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=100.74 Aligned_cols=160 Identities=15% Similarity=0.127 Sum_probs=115.2
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc---CCeEEEEc--CC
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI---AQNIYWSD--PK 255 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~---~~~lYwtd--~~ 255 (377)
..++..|.+|++.+ ++.||+++...++|++++.++...+.+.. .......+...+.|||+++. ++.||++. ..
T Consensus 28 a~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~-~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 28 ATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGE-VPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE-CTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred ecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecc-cCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 46788999999998 57899999878999999876444333322 00001134556999999983 78899864 35
Q ss_pred CCEEEEEEcCCC--------eEEEEeeC----CCCCceeEEEcCCCCeEEEEec--C----------CCCeEEEEecCCC
Q psy5792 256 ENVIEVARLTGQ--------YRYVLISG----GVDQPSALAVDPESGYLFWSES--G----------KIPLIARAGLDGK 311 (377)
Q Consensus 256 ~~~I~~~~~~g~--------~~~~l~~~----~~~~P~~iavdp~~g~lywtd~--g----------~~~~I~r~~ldG~ 311 (377)
.++|.++.+++. ..++++.. ....+..|+++| .|+||++.- + ...+|.|++.||+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 579999998872 23444431 244578899998 689999941 1 1479999999998
Q ss_pred --------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCe
Q psy5792 312 --------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV 346 (377)
Q Consensus 312 --------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~ 346 (377)
..++ ....+.+|.||++|+ +++||++|. ..+.
T Consensus 185 ip~~nPf~~~~i-~a~G~RNp~Gla~dp-~G~L~~~d~-g~~~ 224 (347)
T 3das_A 185 PAPGNPFPGSPV-YSYGHRNVQGLAWDD-KQRLFASEF-GQDT 224 (347)
T ss_dssp BCTTCSSTTCCE-EEBCCSBCCEEEECT-TCCEEEEEC-CSSS
T ss_pred ccCCCCCCCCeE-EeeCCCCcceEEECC-CCCEEEEec-CCCC
Confidence 4444 444689999999997 699999998 6543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-07 Score=86.88 Aligned_cols=263 Identities=10% Similarity=0.019 Sum_probs=151.9
Q ss_pred CCcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC------CCCceEEEEE--ECCeEEEE
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP------DAAQVVAAVF--YKGRIIYS 74 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~------~~~~p~~lav--~~~~ly~t 74 (377)
+...| ++++++++++||+++. ..+.|..+|.... ..++- .. ....|.++++ .+.+||++
T Consensus 65 ~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~l~v~ 142 (373)
T 2mad_H 65 GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred CCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCEEEEE
Confidence 34577 9999999999999985 3577999999755 45442 11 1356889998 67899999
Q ss_pred cCC-CCceEEEcCCC-CceEE-EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcE
Q psy5792 75 DAN-DGNIRSINLDG-SNSTV-LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDF 151 (377)
Q Consensus 75 d~~-~~~I~~~~~~g-~~~~~-~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~ 151 (377)
+.. .+.|..+| .. +.... +.. |.++.++.... .
T Consensus 143 n~~~~~~v~viD-~t~~~~~~~i~~---~~~~~~~~~~~----------------------------------------~ 178 (373)
T 2mad_H 143 QFAAGPAVGLVV-QGGSSDDQLLSS---PTCYHIHPGAP----------------------------------------S 178 (373)
T ss_pred ecCCCCeEEEEE-CCCCEEeEEcCC---CceEEEEeCCC----------------------------------------c
Confidence 875 57899998 43 22222 211 22222221111 1
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEE--ecCCCCce--EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLG--PLSKVSLA--AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~--~~~~~~~~--~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
.+++....|++..+++ .... ..... +......+ ....+....+.+||.. ..+.++.+++.+...+.+..-..
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGA--AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcE--EEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeee
Confidence 2222222334666666 2211 00000 00011112 2233455567777776 45788888887543222211000
Q ss_pred cC-C-CCCCCCcce---EEEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC-eE
Q psy5792 228 TG-D-PTPVDQFTD---IAVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG-YL 292 (377)
Q Consensus 228 ~~-~-~~~~~~p~~---iavD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~l 292 (377)
.. . ......|.+ +++++.++.||++... .+.|.++++.......-+.. ...|.+|+++|... .+
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDL 333 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEE
Confidence 00 0 001113555 8999888999998642 35899999987654322332 33699999999877 67
Q ss_pred EEEecCCCCeEEEEecCCCCeE-EEEecCCCCceEEEE
Q psy5792 293 FWSESGKIPLIARAGLDGKKQT-ILAQEIIMPIKDITL 329 (377)
Q Consensus 293 ywtd~g~~~~I~r~~ldG~~~~-~l~~~~~~~P~glal 329 (377)
|.+.++ ...|..+++...... .+..-+ ..|.+|..
T Consensus 334 ~v~~~~-~~~V~ViD~~t~~vv~~i~~vG-~~P~~~~~ 369 (373)
T 2mad_H 334 YALSAG-TEVLHIYDAGAGDQDQSTVELG-SGPQVLSV 369 (373)
T ss_pred EEEcCC-CCeEEEEECCCCCEEeeecCCC-CCCcEEEE
Confidence 777765 578999998754433 323322 56888776
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-08 Score=99.53 Aligned_cols=248 Identities=18% Similarity=0.156 Sum_probs=157.5
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEe--c------CCC-ceeEEeeecCCCCcccCC
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLR--N------NAG-ISDFILFSVNSGYDIMGI 117 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~--~------~~~-p~~i~v~~~~~~~~~~~~ 117 (377)
.+++. ..+.+|++|++ -+++||+++...++|++++ .+|+...+.. . ... +.||++ +|+=.
T Consensus 19 ~~~~a--~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~-~Pdf~------ 89 (454)
T 1cru_A 19 KKVIL--SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF-HPDFK------ 89 (454)
T ss_dssp EEEEE--CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE-CTTTT------
T ss_pred EEEEE--CCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEE-CCCcC------
Confidence 66665 67999999999 7779999999877899998 4565443321 1 112 667775 44211
Q ss_pred CcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC------------CCeEEEEEcCCCCcee--eEEEE---e
Q psy5792 118 KYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS------------GYDIMGIKYNKNESKV--TQVLG---P 180 (377)
Q Consensus 118 ~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~------------~~~I~~~~l~~~~~~~--~~~~~---~ 180 (377)
.+..|+++... ...|.++.++....++ ...++ +
T Consensus 90 ------------------------------~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p 139 (454)
T 1cru_A 90 ------------------------------NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP 139 (454)
T ss_dssp ------------------------------TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ------------------------------cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC
Confidence 01245554421 1248888876532211 12222 2
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcC--------------------------------CCcEEEEEcCCC-----------
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDID--------------------------------HGTISRTHRDGT----------- 217 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~--------------------------------~~~I~~~~~~G~----------- 217 (377)
......+.+|++++ +++||++.-. .++|.|++.+|+
T Consensus 140 ~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~ 218 (454)
T 1cru_A 140 SSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGV 218 (454)
T ss_dssp CCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTE
T ss_pred CCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCC
Confidence 22344589999998 6789998421 368999999997
Q ss_pred CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCCe--------------------------
Q psy5792 218 GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQY-------------------------- 268 (377)
Q Consensus 218 ~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~~-------------------------- 268 (377)
..++. . .++.+|.+|++|+ ++.||.++.... .|..+...+.+
T Consensus 219 ~~ei~-a-------~G~RNp~gla~dp-~G~L~~~d~g~~~~dein~i~~G~nYGWP~~~G~~~~~~~~~~~~~~~~~~~ 289 (454)
T 1cru_A 219 VSHIY-T-------LGHRNPQGLAFTP-NGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKS 289 (454)
T ss_dssp ECSEE-E-------BCCSEEEEEEECT-TSCEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTT
T ss_pred cceEE-E-------ECCCCcceEEECC-CCCEEEEecCCCCCeEEEEecCCCCCCCCceecCcccCcccccccccccccc
Confidence 33444 4 4788899999998 799999986532 33333221100
Q ss_pred ----------------------------EEEEee----------------------CCCCCceeEEEcC--------CCC
Q psy5792 269 ----------------------------RYVLIS----------------------GGVDQPSALAVDP--------ESG 290 (377)
Q Consensus 269 ----------------------------~~~l~~----------------------~~~~~P~~iavdp--------~~g 290 (377)
..-++. .....|.++++.. .+|
T Consensus 290 ~~~~~y~~~~i~~~~p~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ap~G~~fy~g~~~~~~~~~g 369 (454)
T 1cru_A 290 IKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWEN 369 (454)
T ss_dssp CCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCTTCTT
T ss_pred ccccccCCcccCccccccccccccCCCcCCCceecccccccccccccccccccccccCccCcceeEEeCCCCccCcccCC
Confidence 000000 0123477888853 348
Q ss_pred eEEEEecCCCCeEEEEecCCCC--e----EEEEecCCCCceEEEEeCCCCE-EEEEEeCCCCeEEE
Q psy5792 291 YLFWSESGKIPLIARAGLDGKK--Q----TILAQEIIMPIKDITLDRKNKR-VYWCYSVGSNVLES 349 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ldG~~--~----~~l~~~~~~~P~glalD~~~~~-LYw~d~~~~~~i~~ 349 (377)
.||++++. ..+|.++.+++.+ . ..++. ....|.++++++ .+. ||+++. ..+.|++
T Consensus 370 ~lfv~~~~-~~~i~~v~l~~~g~~~~~~~~~~~~-~~~R~~dv~~gp-DG~~Lyv~~d-~~G~i~~ 431 (454)
T 1cru_A 370 TLLVPSLK-RGVIFRIKLDPTYSTTYDDAVPMFK-SNNRYRDVIASP-DGNVLYVLTD-TAGNVQK 431 (454)
T ss_dssp EEEEEBSS-SCCEEEEEECTTSSSEEEEEEEESC-CSSCEEEEEECT-TSSCEEEEEC-SSCCEEC
T ss_pred cEEEeecC-CCEEEEEEECCCCCeeeeeeeeecc-cCCCceeEEECC-CCCEEEEEEC-CCCCCcc
Confidence 89999996 5799999998533 2 12222 357999999986 465 999999 8888765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-09 Score=105.32 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=113.3
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-CCCCCCCcceEEEecc---CCeEEEEcCC--
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-DPTPVDQFTDIAVDWI---AQNIYWSDPK-- 255 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~~~~~~~p~~iavD~~---~~~lYwtd~~-- 255 (377)
.++..|.+|++++ +++||+++...++|++++.++...+.+....... ...+...+.|||+++. ++.||+++..
T Consensus 24 ~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 24 SNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 4677899999998 5789999987778999987533334333210000 0012345779999986 8999999853
Q ss_pred ----------CCEEEEEEcCCC-----eEEEEee----CCCCCceeEEEcCCCCeEEEEecC--C---------------
Q psy5792 256 ----------ENVIEVARLTGQ-----YRYVLIS----GGVDQPSALAVDPESGYLFWSESG--K--------------- 299 (377)
Q Consensus 256 ----------~~~I~~~~~~g~-----~~~~l~~----~~~~~P~~iavdp~~g~lywtd~g--~--------------- 299 (377)
..+|.+++++.. ..++++. .....+.+|+++| .|+||++... .
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~ 181 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHT 181 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccc
Confidence 358999988642 3345553 2345689999998 7899998521 0
Q ss_pred --------------CCeEEEEecCCCC----------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 300 --------------IPLIARAGLDGKK----------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 300 --------------~~~I~r~~ldG~~----------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
..+|.|++.||+- ...+....+.+|.||++|. +++||.+|. ..+
T Consensus 182 p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~-g~~ 249 (454)
T 1cru_A 182 PTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQ-GPN 249 (454)
T ss_dssp CCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEE-CSS
T ss_pred cccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEec-CCC
Confidence 3689999999972 2234455689999999998 799999998 654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-08 Score=88.19 Aligned_cols=149 Identities=9% Similarity=0.017 Sum_probs=103.2
Q ss_pred EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
.|++++ +++||.++...+.+++++.+.-....-+. . -..+.||+-| ++.||.+|. .++|...++...
T Consensus 99 eGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~-------~-~~eGwGLt~D--g~~L~vSdG-s~~l~~iDp~T~ 165 (268)
T 3nok_A 99 EGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR-------Y-SGEGWGLCYW--NGKLVRSDG-GTMLTFHEPDGF 165 (268)
T ss_dssp EEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE-------C-SSCCCCEEEE--TTEEEEECS-SSEEEEECTTTC
T ss_pred eEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe-------C-CCceeEEecC--CCEEEEECC-CCEEEEEcCCCC
Confidence 445555 78999999889999999987422222222 1 1346778877 789999995 789999998875
Q ss_pred eE-EEE-eeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEEEecC------------CCCceEEEE
Q psy5792 268 YR-YVL-ISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEI------------IMPIKDITL 329 (377)
Q Consensus 268 ~~-~~l-~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~------------~~~P~glal 329 (377)
.. ..+ +.. .+..+..+.. .+|.||...|. ...|.+++..-.. ...+-... ..-|+|||.
T Consensus 166 ~v~~~I~V~~~g~~v~~lNeLe~--~dG~lyanvw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 166 ALVGAVQVKLRGQPVELINELEC--ANGVIYANIWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp CEEEEEECEETTEECCCEEEEEE--ETTEEEEEETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred eEEEEEEeCCCCcccccccccEE--eCCEEEEEECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 32 222 211 1234455554 47899999985 6899999985433 33333221 136899999
Q ss_pred eCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 330 DRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
|+.+++||++-. .=.+++.+.++
T Consensus 243 dp~~~rlfVTGK-~Wp~~~ev~~~ 265 (268)
T 3nok_A 243 EPGSGRIFMTGK-LWPRLFEVRLD 265 (268)
T ss_dssp CTTTCCEEEEET-TCSEEEEEEEE
T ss_pred cCCCCEEEEeCC-CCCceEEEEEE
Confidence 999999999998 77888888763
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-07 Score=83.89 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=104.5
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
..|++++ +++||..+...+.+++++.+.-....-+. .. ..+.||+-| ++.||.+|. .++|.+.++..
T Consensus 67 geGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~-------~~-~~Gwglt~d--g~~L~vSdg-s~~l~~iDp~t 133 (243)
T 3mbr_X 67 GAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFR-------YP-GEGWALTSD--DSHLYMSDG-TAVIRKLDPDT 133 (243)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-------CS-SCCCEEEEC--SSCEEEECS-SSEEEEECTTT
T ss_pred eeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEe-------CC-CCceEEeeC--CCEEEEECC-CCeEEEEeCCC
Confidence 4566666 79999999999999999987422222222 11 246677665 889999996 78999999886
Q ss_pred CeEE-EE-eeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEEEecC------------CCCceEEE
Q psy5792 267 QYRY-VL-ISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEI------------IMPIKDIT 328 (377)
Q Consensus 267 ~~~~-~l-~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~------------~~~P~gla 328 (377)
.... .+ +.. .+..+..+.. .+|.||...|. ...|.+++..-.. ...+-... ..-|+|||
T Consensus 134 ~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanvw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 134 LQQVGSIKVTAGGRPLDNLNELEW--VNGELLANVWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp CCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred CeEEEEEEEccCCcccccceeeEE--eCCEEEEEECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE
Confidence 5332 22 211 1233444443 58999999985 6799999886433 33433221 23689999
Q ss_pred EeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 329 LDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 329 lD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.|+.+++||++-. .=.+++.+.+.
T Consensus 211 ~d~~~~~lfVTGK-~wp~~~~v~~~ 234 (243)
T 3mbr_X 211 FDAEHDRLFVTGK-RWPMLYEIRLT 234 (243)
T ss_dssp EETTTTEEEEEET-TCSEEEEEEEC
T ss_pred EcCCCCEEEEECC-CCCcEEEEEEe
Confidence 9999999999998 88899998875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.7e-08 Score=86.59 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=130.6
Q ss_pred CCcCCccccccCCCCeEEEEeCC--CCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCC
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTL--SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDG 88 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g 88 (377)
.-.+--||++|. ++||..... ...|.++|++.. .+++- ........|+++.+++||..+|..+.+.++| .++
T Consensus 19 ~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 19 TTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred CccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC
Confidence 334556899886 699999775 468999999766 55442 2333344677889999999999999999888 444
Q ss_pred CceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 89 SNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 89 ~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
+. +..+...
T Consensus 96 ~~-----------------------------------------------------------------------~~ti~~~ 104 (243)
T 3mbr_X 96 TP-----------------------------------------------------------------------RARFRYP 104 (243)
T ss_dssp EE-----------------------------------------------------------------------EEEEECS
T ss_pred cE-----------------------------------------------------------------------EEEEeCC
Confidence 33 2333222
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
+ .+.|++.| +++||.+| .+++|+.++...-....-+. -...+..+..+.. ++|.++.
T Consensus 105 ~----------------~Gwglt~d--g~~L~vSd-gs~~l~~iDp~t~~~~~~I~--V~~~g~~~~~lNe--Le~~~G~ 161 (243)
T 3mbr_X 105 G----------------EGWALTSD--DSHLYMSD-GTAVIRKLDPDTLQQVGSIK--VTAGGRPLDNLNE--LEWVNGE 161 (243)
T ss_dssp S----------------CCCEEEEC--SSCEEEEC-SSSEEEEECTTTCCEEEEEE--CEETTEECCCEEE--EEEETTE
T ss_pred C----------------CceEEeeC--CCEEEEEC-CCCeEEEEeCCCCeEEEEEE--EccCCccccccee--eEEeCCE
Confidence 1 23455544 67888888 47788888776422211111 0000011223333 4566899
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEee-C------------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLIS-G------------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~-~------------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
||......+.|.++++........+. . ....|.|||.||.++.||+|-.. =++++++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-wp~~~~v~~~~ 235 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-WPMLYEIRLTP 235 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-CSEEEEEEECC
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-CCcEEEEEEec
Confidence 99888888999999997655433332 1 22468999999999999999742 47898887754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-07 Score=87.30 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=109.2
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc----EEEEeccccCCC----CCCCCcceEEEeccCCeEEEEcCCCC
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR----ENIIEYVETGDP----TPVDQFTDIAVDWIAQNIYWSDPKEN 257 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~----~~i~~~~~~~~~----~~~~~p~~iavD~~~~~lYwtd~~~~ 257 (377)
.|..+++ .++.||+++...+.|..++++.... ...... .+..+ ....+|.++++++.++.||+++...+
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF-KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC-CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc-cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 4666666 3788999998888888888753211 111110 00000 11234688999988778999999889
Q ss_pred EEEEEEcCCCeE-------------EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe--c---
Q psy5792 258 VIEVARLTGQYR-------------YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ--E--- 319 (377)
Q Consensus 258 ~I~~~~~~g~~~-------------~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~--~--- 319 (377)
+|.+.+++.... ..+.......|++++++|...+||+++.. ...|...+++....+.+.. .
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~~~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-GGTVIAFRYADGMLDEIQTVAADTV 256 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TCEEEEEEEETTEEEEEEEEESCSS
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-CCeEEEEEecCCceEEeEEEecCCC
Confidence 999888764321 12222345679999999988889999864 5778887776332222211 1
Q ss_pred CCCCceEEEEeCCCCEEEEEEeCC-CCeEEEEEcc
Q psy5792 320 IIMPIKDITLDRKNKRVYWCYSVG-SNVLESMDYS 353 (377)
Q Consensus 320 ~~~~P~glalD~~~~~LYw~d~~~-~~~i~~~~~~ 353 (377)
....|.++++++.+++||.++. . .+.|...+++
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~-~~~~~i~v~~~~ 290 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNR-LKADGVAIFKVD 290 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEEC-SSSCEEEEEEEC
T ss_pred CCCCcccEEECCCCCEEEEECC-CCCCEEEEEEEc
Confidence 1345789999998899999998 7 7777777765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-07 Score=91.96 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=161.8
Q ss_pred CCCCeEEEEeCCCCcEEEEEcC---Cc--EEEEEe------CCCCCceEEEEEECCeEEEEcCCC------CceEEEc-C
Q psy5792 25 QSGPFVYGVKTLSHSLHYVNIE---VK--VAKVVS------MPDAAQVVAAVFYKGRIIYSDAND------GNIRSIN-L 86 (377)
Q Consensus 25 ~~~~~ly~~d~~~~~I~~~~~d---G~--~~~i~~------~~~~~~p~~lav~~~~ly~td~~~------~~I~~~~-~ 86 (377)
.+..+||+....+++|+.+|.. .+ ...++. ..+...|.++.+..+.||++.+.+ +.|..+| .
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 4567899999999999999974 22 222220 014558999999544599998776 6788888 5
Q ss_pred CCCceEEEecCCCc----eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe------
Q psy5792 87 DGSNSTVLRNNAGI----SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV------ 156 (377)
Q Consensus 87 ~g~~~~~~~~~~~p----~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~------ 156 (377)
+++.+..+.....| .++. ++++.. .++.++
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~-~~p~~~---------------------------------------~mvsS~wg~p~~ 212 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFW-WNLPNE---------------------------------------VLVSSEWAVPNT 212 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEE-EETTTT---------------------------------------EEEECBCCCHHH
T ss_pred CCeEEEEEccCCCCccccceEE-ECCCCC---------------------------------------EEEEccCcCccc
Confidence 56665555422222 1121 233222 222222
Q ss_pred ------------CCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEE--ECCCCEEEEEEc-----CCCcEEEEEcCC
Q psy5792 157 ------------NSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDF--HAAEDYIYWVDI-----DHGTISRTHRDG 216 (377)
Q Consensus 157 ------------~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~--d~~~~~ly~sd~-----~~~~I~~~~~~G 216 (377)
....+|..++++.... .+ .+++. ....|..+.+ ++.+.++|++.. .++.|.++..++
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~-tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKRKR--IH-SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTTEE--EE-EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred cccccchhhhhhccCCEEEEEECCCCcE--ee-EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 0122388888875422 22 23332 2235677766 888999999998 888998877764
Q ss_pred CCcE--EEEeccccCCCCC-----------CCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEE--EeeCC-C--
Q psy5792 217 TGRE--NIIEYVETGDPTP-----------VDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYV--LISGG-V-- 277 (377)
Q Consensus 217 ~~~~--~i~~~~~~~~~~~-----------~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~--l~~~~-~-- 277 (377)
...+ .++.......... -..|.+|++.+.++.||+++...+.|.+++.+ ....+. .+..+ .
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence 3211 1111000000000 14589999999999999999999999999985 322221 12222 1
Q ss_pred -------C----CceeEEEcCCCCeEEEEe--------c----CCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 278 -------D----QPSALAVDPESGYLFWSE--------S----GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 278 -------~----~P~~iavdp~~g~lywtd--------~----g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
. .|++++++|...+||+++ . +.+..+.+++.|.. +||+++.
T Consensus 370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~-------------~GL~~~~--- 433 (462)
T 2ece_A 370 RADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPS-------------GGLEIDK--- 433 (462)
T ss_dssp CBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTT-------------SCEEEEE---
T ss_pred cccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCC-------------CCceeCC---
Confidence 1 599999999999999998 2 12334444433321 2344331
Q ss_pred EEEEEEeCCCCeEEEEEccCCc
Q psy5792 335 RVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
=+++|. ...+...+.+.||+
T Consensus 434 -~f~vdf-~~~~~h~~r~~ggd 453 (462)
T 2ece_A 434 -EFFVDF-GEARSHQVRLSGGD 453 (462)
T ss_dssp -EEEEEC-TTSEEEEEEETTCC
T ss_pred -CEEeec-ccCcceeeecCCCC
Confidence 144566 55667778888775
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-07 Score=89.20 Aligned_cols=294 Identities=13% Similarity=0.106 Sum_probs=170.1
Q ss_pred eeccccCCCCc-CCccccccCCCCeEEEEeC-------CCCcEEEEEcC------Cc-EEEEEeCCCC---CceEEE---
Q psy5792 6 VLPYTRNPSFG-AVASTLKPQSGPFVYGVKT-------LSHSLHYVNIE------VK-VAKVVSMPDA---AQVVAA--- 64 (377)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~d~~~~~ly~~d~-------~~~~I~~~~~d------G~-~~~i~~~~~~---~~p~~l--- 64 (377)
..+|.++|+|- .|.--..-+..+.+|+.-. ..+.|..+|+| |+ +.++- .+.. .|=+|-
T Consensus 3 ~~~~~~~~~~y~sp~~a~~~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~-~p~~gde~HH~gwn~c 81 (462)
T 2ece_A 3 IVPFKRDPTFYPSPKMAMKAPPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVE-LPYINDELHHFGWNAC 81 (462)
T ss_dssp -----CCTTCCSSHHHHHTSCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEE-CSSSCCCBCCCEESCC
T ss_pred cccCCCCCCccCChHHHhcCCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEE-CCCCCCcccccchhhh
Confidence 46899999985 3443334445556776633 25788899998 67 55543 1211 111222
Q ss_pred --------E--EECCeEEEEcCCCCceEEEc-C-CCCceEEEec----------CCC-ceeEEeeecCCCCcccCCCcCC
Q psy5792 65 --------V--FYKGRIIYSDANDGNIRSIN-L-DGSNSTVLRN----------NAG-ISDFILFSVNSGYDIMGIKYNK 121 (377)
Q Consensus 65 --------a--v~~~~ly~td~~~~~I~~~~-~-~g~~~~~~~~----------~~~-p~~i~v~~~~~~~~~~~~~C~~ 121 (377)
. ..+.+||++....++|..+| . +-..+++... +.. |.++..
T Consensus 82 ss~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~---------------- 145 (462)
T 2ece_A 82 SSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC---------------- 145 (462)
T ss_dssp GGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE----------------
T ss_pred hhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE----------------
Confidence 2 45889999999999999999 3 2222333221 111 332221
Q ss_pred CCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC------CCeEEEEEcCCCCceeeEEEEecCCCCc--eEEEEEE
Q psy5792 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS------GYDIMGIKYNKNESKVTQVLGPLSKVSL--AAKVDFH 193 (377)
Q Consensus 122 ~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~------~~~I~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~d 193 (377)
.+ +. ++++... .|.|..++...... ....+...... +..+-+.
T Consensus 146 ---------~p----------------dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v---~~~~~~~~~~~~~~Yd~~~~ 196 (462)
T 2ece_A 146 ---------GP----------------DA-IYISALGNEEGEGPGGILMLDHYSFEP---LGKWEIDRGDQYLAYDFWWN 196 (462)
T ss_dssp ---------CS----------------SC-EEEEEEEETTSCSCCEEEEECTTTCCE---EEECCSBCTTCCCCCCEEEE
T ss_pred ---------CC----------------Ce-EEEEcCCCcCCCCCCeEEEEECCCCeE---EEEEccCCCCccccceEEEC
Confidence 11 11 2222211 13366665554322 11222222222 3335557
Q ss_pred CCCCEEEEEEc------------------CCCcEEEEEcCCCCcEEEEeccccCCCCC--CCCcceEEE--eccCCeEEE
Q psy5792 194 AAEDYIYWVDI------------------DHGTISRTHRDGTGRENIIEYVETGDPTP--VDQFTDIAV--DWIAQNIYW 251 (377)
Q Consensus 194 ~~~~~ly~sd~------------------~~~~I~~~~~~G~~~~~i~~~~~~~~~~~--~~~p~~iav--D~~~~~lYw 251 (377)
+..+.+|.++. ..++|...+++.......+. .+ -..|..|++ ++.+..+|+
T Consensus 197 p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-------vg~~g~~P~~i~f~~~Pdg~~aYV 269 (462)
T 2ece_A 197 LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-------LGEENRMALELRPLHDPTKLMGFI 269 (462)
T ss_dssp TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-------SCTTEEEEEEEEECSSTTCCEEEE
T ss_pred CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe-------cCCCCCccceeEeeECCCCCEEEE
Confidence 77888888873 36899999998532111222 11 124888877 888899999
Q ss_pred EcC-----CCCEEEEEEcCCCe---EEEE-eeC-----C-----------CCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 252 SDP-----KENVIEVARLTGQY---RYVL-ISG-----G-----------VDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 252 td~-----~~~~I~~~~~~g~~---~~~l-~~~-----~-----------~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
+.. ..++|.++..++.. .+++ +.. . ...|.+|++.+...+||+++++ ...|...
T Consensus 270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg-~d~Vavf 348 (462)
T 2ece_A 270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG-IGEVRQY 348 (462)
T ss_dssp EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT-TTEEEEE
T ss_pred EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC-CCEEEEE
Confidence 998 88889887776532 1111 111 0 2468999999999999999998 5788888
Q ss_pred ecC-CCCeEEEEecCCC----------------CceEEEEeCCCCEEEEEE------------eCCCCeEEEEEcc
Q psy5792 307 GLD-GKKQTILAQEIIM----------------PIKDITLDRKNKRVYWCY------------SVGSNVLESMDYS 353 (377)
Q Consensus 307 ~ld-G~~~~~l~~~~~~----------------~P~glalD~~~~~LYw~d------------~~~~~~i~~~~~~ 353 (377)
+.+ ....+.+-.-... .|.++++++.+++||++. ......+.+++.|
T Consensus 349 dV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd 424 (462)
T 2ece_A 349 DISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNAN 424 (462)
T ss_dssp ECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEEC
T ss_pred EecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEec
Confidence 874 3333322221122 599999999999999998 1145677766444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-08 Score=92.94 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=115.8
Q ss_pred CCCeEEEEEcCCCCceeeEEEEecCC------CCceEEEEEECC---CCEEEEEEcCC--C--cEEEEEcCCCCcEEEEe
Q psy5792 158 SGYDIMGIKYNKNESKVTQVLGPLSK------VSLAAKVDFHAA---EDYIYWVDIDH--G--TISRTHRDGTGRENIIE 224 (377)
Q Consensus 158 ~~~~I~~~~l~~~~~~~~~~~~~~~~------~~~~~~l~~d~~---~~~ly~sd~~~--~--~I~~~~~~G~~~~~i~~ 224 (377)
..|.|..++++.... ....+.+.+ .-+|.|+++... ..+||++|... . .|++++.++.. .+++.
T Consensus 81 ~~G~I~~~d~~~~~~--~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~ 157 (355)
T 3sre_A 81 KSGKILLMDLNEKEP--AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLK 157 (355)
T ss_dssp -CCEEEEEETTSSSC--CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEE
T ss_pred CCCeEEEEecCCCCC--ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEe
Confidence 456799999874322 122233333 237999999662 34799999763 2 46667776543 33333
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcC-----------------CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDP-----------------KENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~-----------------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
..+. ..+..|+++++|. .+.+|+++. ..++|++++.+ ..+++.. ++..|+|||++|
T Consensus 158 ~~~g---~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~-~l~~pNGia~sp 230 (355)
T 3sre_A 158 TIRH---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAE-GFDFANGINISP 230 (355)
T ss_dssp EECC---TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEE-EESSEEEEEECT
T ss_pred cccc---CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeec-CCcccCcceECC
Confidence 1111 4577899999995 688888764 23678888873 3444544 588999999999
Q ss_pred CCCeEEEEecCCCCeEEEEecCCCC----eEEEEecCCCCceEEEEeCCCCEEEEEE
Q psy5792 288 ESGYLFWSESGKIPLIARAGLDGKK----QTILAQEIIMPIKDITLDRKNKRVYWCY 340 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~ldG~~----~~~l~~~~~~~P~glalD~~~~~LYw~d 340 (377)
.+..||++|.. ..+|++.++++.+ ++++ .. -..|.|+++|.++++||.+.
T Consensus 231 Dg~~lYvadt~-~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 231 DGKYVYIAELL-AHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp TSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECTTTCCEEEEE
T ss_pred CCCEEEEEeCC-CCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeCCCCcEEEEe
Confidence 98999999985 6899999987533 2333 32 46899999996468899865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-08 Score=89.65 Aligned_cols=258 Identities=8% Similarity=0.009 Sum_probs=156.6
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCC----CCceEEEEE--ECCeEEEEcC-----------C
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPD----AAQVVAAVF--YKGRIIYSDA-----------N 77 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~----~~~p~~lav--~~~~ly~td~-----------~ 77 (377)
.|.+++++++++++|++....+.|..+|+.+. ..++. ... ...|.++++ .+++||+++. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cCCcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 48999999999899999999999999998765 44453 121 126788888 4558999952 3
Q ss_pred CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe
Q psy5792 78 DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156 (377)
Q Consensus 78 ~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~ 156 (377)
.+.|..++ .+++....+.....|.++.+ +++.. .++++
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-s~dg~---------------------------------------~l~~~- 152 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAW-ARDGS---------------------------------------KLYGL- 152 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEE-CTTSS---------------------------------------CEEEE-
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEE-CCCCC---------------------------------------EEEEe-
Confidence 57898888 55555444443323555553 33221 35555
Q ss_pred CCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC-----------------------cEEEEE
Q psy5792 157 NSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG-----------------------TISRTH 213 (377)
Q Consensus 157 ~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~-----------------------~I~~~~ 213 (377)
... |..+++..... ....+......+. .+.+.+..||++....+ .|+.++
T Consensus 153 ~~~--i~~~d~~~~~~---~~~~~~~~~~~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 153 GRD--LHVMDPEAGTL---VEDKPIQSWEAET--YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp SSS--EEEEETTTTEE---EEEECSTTTTTTT--BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred CCe--EEEEECCCCcE---eeeeeccccCCCc--eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 333 88888865532 1112222111222 33444555555443332 356677
Q ss_pred cCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEE
Q psy5792 214 RDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLF 293 (377)
Q Consensus 214 ~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly 293 (377)
+.......+... .....|.++++++.++.||.+ .++|.+.+++.......+.. ...|.+++++|...+||
T Consensus 226 ~~~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 226 LETGEMAMREVR------IMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVW 295 (337)
T ss_dssp TTTCCEEEEEEE------ECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEE
T ss_pred CCCCCceEeecC------CCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEE
Confidence 664433221110 122468899999988889988 47899999987654444443 35799999999878898
Q ss_pred EEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 294 WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 294 wtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
.+.. ...|...++........+... ..|. +.+ ...++|+.
T Consensus 296 ~~~~--~~~i~v~d~~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~ 335 (337)
T 1pby_B 296 LGGA--LGDLAAYDAETLEKKGQVDLP-GNAS-MSL--ASVRLFTR 335 (337)
T ss_dssp EESB--SSEEEEEETTTCCEEEEEECG-GGCC-CBT--CCCEEEEC
T ss_pred EEcC--CCcEEEEECcCCcEEEEEEcC-CCCc-eeE--eeeEEEec
Confidence 8843 578999988754433333321 1232 222 45677764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-07 Score=81.52 Aligned_cols=231 Identities=14% Similarity=0.034 Sum_probs=152.6
Q ss_pred CCeEEEEcCCCCceEEEc-CCCCceEEEecCC--CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 68 KGRIIYSDANDGNIRSIN-LDGSNSTVLRNNA--GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 68 ~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~--~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
.+.+++++..++.|..++ .+|+..-.+.... .+.++.+ .++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~-~pd----------------------------------- 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAA-TKA----------------------------------- 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEE-CTT-----------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEE-CCC-----------------------------------
Confidence 468888888889999999 4888766554322 2444443 111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEcCCCCcEEEE
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHRDGTGRENII 223 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~~G~~~~~i~ 223 (377)
..++++.... |..++.++... ..+.......+.+..+.+ ++.+++++.. .++|+.++.+|.....+.
T Consensus 48 -----G~ilvs~~~~--V~~~d~~G~~~----W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~ 115 (276)
T 3no2_A 48 -----GEILFSYSKG--AKMITRDGREL----WNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTE 115 (276)
T ss_dssp -----SCEEEECBSE--EEEECTTSCEE----EEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEE
T ss_pred -----CCEEEeCCCC--EEEECCCCCEE----EEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEe
Confidence 1244454443 77776644321 111211112345566655 6677777766 778988888886544443
Q ss_pred eccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 224 EYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 224 ~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
.. .........|.+++++. ++++++++...++|..++++|+..-.+-.. ..|.++++.+ +|.+++++.. ..+|
T Consensus 116 ~~--~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~--~~~~~~~~~~-~g~~~v~~~~-~~~v 188 (276)
T 3no2_A 116 FE--TGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQLLNSVKLS--GTPFSSAFLD-NGDCLVACGD-AHCF 188 (276)
T ss_dssp EC--CSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECS--SCCCEEEECT-TSCEEEECBT-TSEE
T ss_pred cc--CCCCcccccccCceECC-CCCEEEEecCCCEEEEECCCCCEEEEEECC--CCccceeEcC-CCCEEEEeCC-CCeE
Confidence 21 00001123477888885 678889999999999999998876555432 4689999986 7888888864 5789
Q ss_pred EEEecC-CCCeEEEEecC-----CCCceEEEEeCCCCEEEEEEeCCC----------CeEEEEEccCC
Q psy5792 304 ARAGLD-GKKQTILAQEI-----IMPIKDITLDRKNKRVYWCYSVGS----------NVLESMDYSGG 355 (377)
Q Consensus 304 ~r~~ld-G~~~~~l~~~~-----~~~P~glalD~~~~~LYw~d~~~~----------~~i~~~~~~G~ 355 (377)
..++.+ |+....+-..+ +..|.+++++ .++.+|+++. .. .++..++.+|.
T Consensus 189 ~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~-~~G~i~v~~~-~g~~~~~~~~~~~~~~~~~~~g~ 254 (276)
T 3no2_A 189 VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL-QNGGLYICNW-QGHDREAGKGKHPQLVEIDSEGK 254 (276)
T ss_dssp EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC-TTSCEEEEEE-CTTCTTGGGSCCCSEEEECTTSB
T ss_pred EEEeCcCCcEEEEecCCCCCCccccccccceEc-CCCCEEEEec-cCccccccccCCceEEEECCCCC
Confidence 999998 88877776432 5569999997 5899999996 33 35777777764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-06 Score=81.25 Aligned_cols=272 Identities=12% Similarity=0.016 Sum_probs=156.9
Q ss_pred CCCeEEEEeCC-----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc-C
Q psy5792 26 SGPFVYGVKTL-----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN-L 86 (377)
Q Consensus 26 ~~~~ly~~d~~-----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~-~ 86 (377)
+..++|+++.. .+.|..+|.+.. ..++ .....| ++++ .+.++|+++. ..+.|..++ .
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i---~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV---PTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE---ECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe---cCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 34689999865 468999997654 5555 345678 9999 5678999974 234688888 5
Q ss_pred CCCceEEEecC-------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-
Q psy5792 87 DGSNSTVLRNN-------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS- 158 (377)
Q Consensus 87 ~g~~~~~~~~~-------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~- 158 (377)
+++....+.-. ..|.++++ +++. .+|++++..
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~-spdg---------------------------------------~~l~v~n~~~ 129 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQ-TTDG---------------------------------------KFIVLQNASP 129 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEE-CTTS---------------------------------------SEEEEEEESS
T ss_pred CCcEEEEEEcCccccccCCCcceEEE-CCCC---------------------------------------CEEEEECCCC
Confidence 56655444321 12666664 3332 267777643
Q ss_pred CCeEEEEEcCCCCceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEE-EEeccccCCCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGREN-IIEYVETGDPTPVDQ 236 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~-i~~~~~~~~~~~~~~ 236 (377)
.+.|..+++..... +.. +. .....++.+.+.+...|++....+++..+..+...... ... .... ...-..
T Consensus 130 ~~~v~v~d~~~~~~-----~~~~i~-~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~~~~-~~~~~~ 201 (361)
T 2oiz_A 130 ATSIGIVDVAKGDY-----VEDVTA-AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR-SKQM-FSVKDD 201 (361)
T ss_dssp SEEEEEEETTTTEE-----EEEEGG-GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE-CCCC-SCTTTS
T ss_pred CCeEEEEECCCCcE-----EEEEec-CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc-ccce-EcCCCC
Confidence 45699998876522 222 21 12223344445444556665566666666654322221 110 0000 001112
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee--C-------CCCCcee---EEEcCCCCeEEEEec--C----
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS--G-------GVDQPSA---LAVDPESGYLFWSES--G---- 298 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~--~-------~~~~P~~---iavdp~~g~lywtd~--g---- 298 (377)
|..+..-+..+.+++... .+++.+.++.+.....+-. . ....|.+ ++++|..+++|++.. +
T Consensus 202 ~~~~~~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 202 PIFIAPALDKDKAHFVSY-YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CBCSCCEECSSEEEEEBT-TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ceEEEecccCCEEEEEeC-CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 433333333456666654 4688888887654322211 0 0112444 999999999999864 1
Q ss_pred ---CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 299 ---KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 299 ---~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
....|...++.......-+... . |.+|++++.+++||.+. . +.|..++...+
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~-~-p~~ia~spdg~~l~v~n--~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGR-D-ALSMTIDQQRNLMLTLD--G-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECT-T-CCEEEEETTTTEEEEEC--S-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecC-C-eeEEEECCCCCEEEEeC--C-CeEEEEECCCC
Confidence 1347888887654333223322 3 99999999889998765 3 78888888754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-08 Score=91.98 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=115.1
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC--CCCCCCcceEEE---eccCCeEEE-EcC-----
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD--PTPVDQFTDIAV---DWIAQNIYW-SDP----- 254 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~--~~~~~~p~~iav---D~~~~~lYw-td~----- 254 (377)
-|.+.++|..++++|+++...++|.++++++...+.+.- .... .+....|.||.+ |+. ++|++ ++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~--~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~ 90 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI--DGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN 90 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC--TTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec--CCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence 377889999899999999999999999998654444422 0000 012235889999 775 78877 442
Q ss_pred -------CCCEEEEEEcC----CCeEEEE-eeC-----------CCCCceeEEEcCCCCeEEEEecCCC-CeEEEEecCC
Q psy5792 255 -------KENVIEVARLT----GQYRYVL-ISG-----------GVDQPSALAVDPESGYLFWSESGKI-PLIARAGLDG 310 (377)
Q Consensus 255 -------~~~~I~~~~~~----g~~~~~l-~~~-----------~~~~P~~iavdp~~g~lywtd~g~~-~~I~r~~ldG 310 (377)
....+.+.+++ |+....+ +.. ....|.++++|+ .|.+|+++.. . +.|.|++.||
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~-~~~~I~rV~pdG 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFAL-GMPAIARVSADG 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEE-SSCEEEEECTTS
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCC-CCCeEEEEeCCC
Confidence 24679999999 4433222 110 123489999997 8999999975 5 8999999999
Q ss_pred CCeEEEEecC-----CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 311 KKQTILAQEI-----IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 311 ~~~~~l~~~~-----~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+......... ...|+||++++.+..|+..+. .++|.++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~ 214 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVS 214 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS--SSSEEEEECS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCC
Confidence 9666554331 223789999987777877776 7889999977
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-07 Score=88.16 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=113.8
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+.+..+++.++.+||+|...+.|+++++++...+.+.. -..|.+|++++ .+++|++.. ..|.+.+
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~---------~~~v~~i~~~~-dg~l~v~~~--~gl~~~d 115 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL---------PFMGSALAKIS-DSKQLIASD--DGLFLRD 115 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC---------SSCEEEEEEEE-TTEEEEEET--TEEEEEE
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC---------CCcceEEEEeC-CCeEEEEEC--CCEEEEE
Confidence 34578889999889999999988999999998654333322 23689999996 577877763 4699999
Q ss_pred cCCCeEEEEeeCC----CCCceeEEEcCCCCeEEEEecC-----CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 264 LTGQYRYVLISGG----VDQPSALAVDPESGYLFWSESG-----KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 264 ~~g~~~~~l~~~~----~~~P~~iavdp~~g~lywtd~g-----~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
+++...+.+.... ...|.++++|| .|.+|+++.+ ....|++.+ +|+.. .+.. .+..|+++++++.++
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~~-~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLFA-DISIPNSICFSPDGT 191 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEEE-EESSEEEEEECTTSC
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-EeeC-CCcccCCeEEcCCCC
Confidence 8765544444321 24689999998 6788888753 136899998 65432 3333 356899999998888
Q ss_pred EEEEEEeCCCCeEEEEEcc
Q psy5792 335 RVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~ 353 (377)
.||+++. ..+.|.+++++
T Consensus 192 ~lyv~~~-~~~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDT-KVNRLMRVPLD 209 (326)
T ss_dssp EEEEEET-TTCEEEEEEBC
T ss_pred EEEEEEC-CCCEEEEEEcc
Confidence 9999999 88999999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-07 Score=94.27 Aligned_cols=289 Identities=9% Similarity=-0.014 Sum_probs=176.2
Q ss_pred CCcCCccccccC-----CCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE----ECCeEEEEc--------
Q psy5792 14 SFGAVASTLKPQ-----SGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF----YKGRIIYSD-------- 75 (377)
Q Consensus 14 ~~~~~~~~~~d~-----~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav----~~~~ly~td-------- 75 (377)
+.+.+. .++.. ++.+||+.+...++|.++|++.. ...++..+....|.|+++ ..++||+++
T Consensus 84 ~gd~hh-~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 84 NGDLHH-VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp CCCBCC-EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred cCCCCc-cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCC
Confidence 344444 55555 66799999999999999999998 555543355678999997 478999994
Q ss_pred ---------CCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc-------
Q psy5792 76 ---------ANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL------- 138 (377)
Q Consensus 76 ---------~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~------- 138 (377)
...+.+..+| .+.+....+.-+..|.++.+ +++.. +.=. .|.++.....
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~-spdGk--~~~v-----------t~~~se~~~~i~~~~~~ 228 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDA-DYEGK--WAFS-----------TSYNSEKGMTLPEMTAA 228 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEE-CSSSS--EEEE-----------EESCTTCCSSHHHHTCC
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEE-CCCCC--EEEE-----------EecCcccCcchhhcccc
Confidence 4445677777 44444333333224767765 22221 0000 0111111000
Q ss_pred cCCcC---------CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcE
Q psy5792 139 AAKVD---------FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTI 209 (377)
Q Consensus 139 ~~G~~---------~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I 209 (377)
...+. .......++.+ +. +..++......+..-...| ....|.++++.+.+.++|+++...+.|
T Consensus 229 ~~d~v~V~~~~~~~~~v~~Gk~~~i---~~--V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 229 EMDHIVVFNIAEIEKAIAAGDYQEL---NG--VKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp SEEEEEEEEHHHHHHHHHHTCSEEE---TT--EEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred ccceEEEeeccceeEeccCCCeeEE---Cc--EEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeE
Confidence 00000 00000112222 33 8888776411100011222 235799999999999999999999999
Q ss_pred EEEEcCCCC---------c-EEEEeccccCCCCCC-CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC--------eEE
Q psy5792 210 SRTHRDGTG---------R-ENIIEYVETGDPTPV-DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ--------YRY 270 (377)
Q Consensus 210 ~~~~~~G~~---------~-~~i~~~~~~~~~~~~-~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~--------~~~ 270 (377)
..++.+... . .++.. ..+ ..|..+++|+.+ ++|.+....+.|.+.+++.. ...
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~-------v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAE-------PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEEC-------CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred EEEECcccccccccccCcccceEEE-------cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 999987310 0 12222 122 359999999865 99999999999999998761 122
Q ss_pred EEeeC-CCCCc------eeEEEcCCCCeEEEEecCCCCeE-----------EEEecCCCCeEEEEec-CCCCceEEEEeC
Q psy5792 271 VLISG-GVDQP------SALAVDPESGYLFWSESGKIPLI-----------ARAGLDGKKQTILAQE-IIMPIKDITLDR 331 (377)
Q Consensus 271 ~l~~~-~~~~P------~~iavdp~~g~lywtd~g~~~~I-----------~r~~ldG~~~~~l~~~-~~~~P~glalD~ 331 (377)
++-.. -..+| .++++.|...+||.++.++.-++ ..++++|...+.+... ....|...++++
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~ 453 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVH 453 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEEC
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEcc
Confidence 22111 13456 78888999999999997643455 6677777665554332 267899999886
Q ss_pred C
Q psy5792 332 K 332 (377)
Q Consensus 332 ~ 332 (377)
.
T Consensus 454 ~ 454 (595)
T 1fwx_A 454 P 454 (595)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-08 Score=93.17 Aligned_cols=262 Identities=8% Similarity=-0.030 Sum_probs=153.7
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC-----CCCceEEEEE--ECCeEEEEcC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP-----DAAQVVAAVF--YKGRIIYSDA 76 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~-----~~~~p~~lav--~~~~ly~td~ 76 (377)
...| +++++++++++|++++ ..+.|..+|+... ..+|-... ....|.++++ .+.++|+++.
T Consensus 65 G~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~ 143 (368)
T 1mda_H 65 AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred CCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEcc
Confidence 4578 9999999999999984 4688999999877 66653110 1357999999 6779999997
Q ss_pred C-CCceEE--Ec-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEE
Q psy5792 77 N-DGNIRS--IN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFI 152 (377)
Q Consensus 77 ~-~~~I~~--~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l 152 (377)
. .+.+.. +| .+ ...+.. ++|.|+- + .+ ...
T Consensus 144 ~~~~~v~V~~iD~~t---v~~i~v---------------------------~~~~~~~-p--~g-------------~~~ 177 (368)
T 1mda_H 144 GSSAAAGLSVPGASD---DQLTKS---------------------------ASCFHIH-P--GA-------------AAT 177 (368)
T ss_dssp SSSCEEEEEETTTEE---EEEEEC---------------------------SSCCCCE-E--EE-------------TTE
T ss_pred CCCCeEEEEEEchhh---ceEEEC---------------------------CCceEEc-c--CC-------------CeE
Confidence 6 456777 77 33 233321 1121110 0 00 012
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEE----ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLG----PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~----~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
+++....|++..++++.....-...+. .+.....|. + ....+.+||+.. +.+..++..+...+.+... ..
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~-~~ 251 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAI-DG 251 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCC-CS
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEE-Ee
Confidence 222222233555665540000000000 011123455 3 555788898886 8999999875433333210 00
Q ss_pred CCC---CCCCCcce---EEEeccCCeEEEEcC---C-----CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEE
Q psy5792 229 GDP---TPVDQFTD---IAVDWIAQNIYWSDP---K-----ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFW 294 (377)
Q Consensus 229 ~~~---~~~~~p~~---iavD~~~~~lYwtd~---~-----~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lyw 294 (377)
... .....|.+ +++++.++++|++.. . .+.+.++++.......-+.. ...|.+|+++|...++|+
T Consensus 252 ~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEE
T ss_pred ccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEE
Confidence 000 01113666 899998999999865 2 24566999876543222222 236999999998778999
Q ss_pred EecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC
Q psy5792 295 SESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331 (377)
Q Consensus 295 td~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~ 331 (377)
+.......|..+++.......-+.. -..|.||+++.
T Consensus 331 a~~~~~~~VsVID~~t~kvv~~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 331 ANSAGTEVLDIYDAASDQDQSSVEL-DKGPESLSVQN 366 (368)
T ss_dssp EEETTTTEEEEEESSSCEEEEECCC-CSCCCEEECCC
T ss_pred EccCCCCeEEEEECCCCcEEEEEEC-CCCCCEEEeec
Confidence 9872268999999875433322332 46799999853
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-06 Score=79.34 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=150.9
Q ss_pred CeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEEecCC--Ccee
Q psy5792 28 PFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVLRNNA--GISD 102 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~--~p~~ 102 (377)
++++++++..+.|..+|. +|+ +-++- ......+.++++ .+++++++. .+.|..++.+|+.+-.+.... .+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilvs~--~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILFSY--SKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEEEC--BSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEEeC--CCCEEEECCCCCEEEEEcCCCCccccc
Confidence 478889999999999999 888 66553 122246788888 677888853 567999998887765554321 1222
Q ss_pred EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-CCeEEEEEcCCCCceeeEEEEec
Q psy5792 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS-GYDIMGIKYNKNESKVTQVLGPL 181 (377)
Q Consensus 103 i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~-~~~I~~~~l~~~~~~~~~~~~~~ 181 (377)
..+ .+ +.-++++... .+.+..++.++... ....+
T Consensus 82 ~~~-~~----------------------------------------dG~~lv~~~~~~~~v~~vd~~Gk~l----~~~~~ 116 (276)
T 3no2_A 82 ARI-LP----------------------------------------DGNALVAWCGHPSTILEVNMKGEVL----SKTEF 116 (276)
T ss_dssp EEE-CT----------------------------------------TSCEEEEEESTTEEEEEECTTSCEE----EEEEE
T ss_pred cEE-CC----------------------------------------CCCEEEEecCCCCEEEEEeCCCCEE----EEEec
Confidence 221 11 1123444332 33354444444321 11111
Q ss_pred CC-----CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC
Q psy5792 182 SK-----VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256 (377)
Q Consensus 182 ~~-----~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~ 256 (377)
.. ...+.+++++. ++.+++++...++|..++.+|.....+-. -..|.++++++ ++++++++...
T Consensus 117 ~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~~~w~~~~---------~~~~~~~~~~~-~g~~~v~~~~~ 185 (276)
T 3no2_A 117 ETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQLLNSVKL---------SGTPFSSAFLD-NGDCLVACGDA 185 (276)
T ss_dssp CCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSCEEEEEEC---------SSCCCEEEECT-TSCEEEECBTT
T ss_pred cCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCCCCEEEEEEC---------CCCccceeEcC-CCCEEEEeCCC
Confidence 11 11244555665 56677888888999999999755444432 24688888884 78899999888
Q ss_pred CEEEEEEcC-CCeEEEEeeC-----CCCCceeEEEcCCCCeEEEEec-CC--------CCeEEEEecCCCCeEEEEec-C
Q psy5792 257 NVIEVARLT-GQYRYVLISG-----GVDQPSALAVDPESGYLFWSES-GK--------IPLIARAGLDGKKQTILAQE-I 320 (377)
Q Consensus 257 ~~I~~~~~~-g~~~~~l~~~-----~~~~P~~iavdp~~g~lywtd~-g~--------~~~I~r~~ldG~~~~~l~~~-~ 320 (377)
++|..++++ |+..-.+-.. .+..|.++++.+ +|.+|++++ +. ..++..++.+|.-...+-.. .
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCccc
Confidence 899999999 8876666432 245689999997 899999996 31 33566666666554443332 2
Q ss_pred CCCceEE
Q psy5792 321 IMPIKDI 327 (377)
Q Consensus 321 ~~~P~gl 327 (377)
+..++++
T Consensus 265 ~~~~~~~ 271 (276)
T 3no2_A 265 FGMISTI 271 (276)
T ss_dssp SCCCCEE
T ss_pred ccceeee
Confidence 4455543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-07 Score=91.98 Aligned_cols=255 Identities=11% Similarity=0.015 Sum_probs=158.8
Q ss_pred ECCeEEEEcCCCCceEEEc-CCCCceEEEe--cCCCceeEEeee-cCCCCcccCCCcCCCCCCceeccccCCCccccCCc
Q psy5792 67 YKGRIIYSDANDGNIRSIN-LDGSNSTVLR--NNAGISDFILFS-VNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKV 142 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~-~~g~~~~~~~--~~~~p~~i~v~~-~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~ 142 (377)
.+.+||++|..+.+|.+++ .+.+...++. ...+|.|+++.. |+..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~------------------------------- 148 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN------------------------------- 148 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-------------------------------
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-------------------------------
Confidence 5779999999999999999 5566555443 233499998755 4432
Q ss_pred CCCcCCCcEEEEEeC-----------------CCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC
Q psy5792 143 DFHAGISDFILFSVN-----------------SGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID 205 (377)
Q Consensus 143 ~~C~~~~~~l~~s~~-----------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~ 205 (377)
+++++.. ..+.+..++.+.... ...+++. .+|.++++++.++++|+++..
T Consensus 149 --------~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v---~~qI~Vg--g~pd~~~~spdGk~~~vt~~~ 215 (595)
T 1fwx_A 149 --------YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV---AWQVLVS--GNLDNCDADYEGKWAFSTSYN 215 (595)
T ss_dssp --------EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE---EEEEEES--SCCCCEEECSSSSEEEEEESC
T ss_pred --------EEEEecccccccCCCCcccccccccCceEEEEECCCCeE---EEEEEeC--CCccceEECCCCCEEEEEecC
Confidence 2222211 111366666665422 1222333 378999999999999999976
Q ss_pred CC--------------cEEEEEc--------CCCC----cEEEEeccc--cCC----CCCCCCcceEEEeccCCeEEEEc
Q psy5792 206 HG--------------TISRTHR--------DGTG----RENIIEYVE--TGD----PTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 206 ~~--------------~I~~~~~--------~G~~----~~~i~~~~~--~~~----~~~~~~p~~iavD~~~~~lYwtd 253 (377)
+. .|...+. +|.. .-.++.... ... ..--..|.|+++.+.++.+|+++
T Consensus 216 se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 216 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp TTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC
T ss_pred cccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeC
Confidence 52 2332221 1210 011111100 000 00113699999999999999999
Q ss_pred CCCCEEEEEEcCCCe------------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-------CC-e
Q psy5792 254 PKENVIEVARLTGQY------------RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-------KK-Q 313 (377)
Q Consensus 254 ~~~~~I~~~~~~g~~------------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-------~~-~ 313 (377)
...++|.+++.+... ...-+. -...|+.+++||. |++|.+.+- .+.|.+.+++. .. .
T Consensus 296 ~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~d-G~aY~t~~l-dsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 296 KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGR-GNAYTSLFL-DSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTT-SEEEEEETT-TTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCC-CeEEEEEec-CCcEEEEEhhHhhhhhcccccc
Confidence 999999999998431 111112 2356999999995 599999875 68888888764 11 2
Q ss_pred EEEEecC-CCCc------eEEEEeCCCCEEEEEEeCCC-CeE-----------EEEEccCCceEEEEecCCCCCc
Q psy5792 314 TILAQEI-IMPI------KDITLDRKNKRVYWCYSVGS-NVL-----------ESMDYSGGSKMQLKLSSNIKNA 369 (377)
Q Consensus 314 ~~l~~~~-~~~P------~glalD~~~~~LYw~d~~~~-~~i-----------~~~~~~G~~~~~~~~~~~~~~p 369 (377)
+++-.-. -.+| .|+++...+++||.+.. .. +++ +-+++.|+..+.+.......+|
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk-~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~eP 446 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK-FSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEP 446 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES-CCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCC
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCC-CCccccccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCC
Confidence 2222211 2345 56777888999999998 55 666 7888887655555444445555
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-07 Score=90.31 Aligned_cols=264 Identities=6% Similarity=-0.064 Sum_probs=161.9
Q ss_pred CCCeEEEEeCCCC----cEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc-CC
Q psy5792 26 SGPFVYGVKTLSH----SLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN-LD 87 (377)
Q Consensus 26 ~~~~ly~~d~~~~----~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~-~~ 87 (377)
...++|+++...+ .|..+|++.. ..++ .....| ++++ .+.++|+++. ..+.|..+| .+
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i---~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS---LGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---EECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEE---eCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 3468999999877 8889999877 5555 334568 8999 6779999983 357899999 77
Q ss_pred CCceEEEecC--------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-
Q psy5792 88 GSNSTVLRNN--------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS- 158 (377)
Q Consensus 88 g~~~~~~~~~--------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~- 158 (377)
++....+.-. ..|.++.+ +++.+ ++++++..
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~-SpDGk---------------------------------------~lyVan~~~ 145 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGN-CASSA---------------------------------------CLLFFLFGS 145 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEE-CTTSS---------------------------------------CEEEEECSS
T ss_pred CCEEEEEECCCccccccCCCcceEEE-cCCCC---------------------------------------EEEEEccCC
Confidence 8776665422 22777765 33332 46666632
Q ss_pred CCeEEE--EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC---cEEEEeccccCCCCC
Q psy5792 159 GYDIMG--IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG---RENIIEYVETGDPTP 233 (377)
Q Consensus 159 ~~~I~~--~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~---~~~i~~~~~~~~~~~ 233 (377)
...+.. ++... . ..+++.+. ..+ .+..++.|++....+++..++++... .+.+.... ... .-
T Consensus 146 ~~~v~V~~iD~~t--v----~~i~v~~~---~~~--~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i-~v 212 (368)
T 1mda_H 146 SAAAGLSVPGASD--D----QLTKSASC---FHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQ-NC 212 (368)
T ss_dssp SCEEEEEETTTEE--E----EEEECSSC---CCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTS-CB
T ss_pred CCeEEEEEEchhh--c----eEEECCCc---eEE--ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eee-eC
Confidence 223555 44322 1 11222211 111 23356678877777888778776411 11110000 000 01
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC---------CCCCcee---EEEcCCCCeEEEEec---C
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG---------GVDQPSA---LAVDPESGYLFWSES---G 298 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~---------~~~~P~~---iavdp~~g~lywtd~---g 298 (377)
-..|. + .+..+.+||+.. +++.++++.+...+++-.- ....|.+ ++++|..+++|++.. +
T Consensus 213 g~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~ 287 (368)
T 1mda_H 213 SSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287 (368)
T ss_dssp CSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred CCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccC
Confidence 12465 4 556788888887 8999999987543332211 1234666 999999999999865 2
Q ss_pred C----CCeEEEEecCCCCe-EEEEecCCCCceEEEEeCCCCEEEEEEeCC-CCeEEEEEccC
Q psy5792 299 K----IPLIARAGLDGKKQ-TILAQEIIMPIKDITLDRKNKRVYWCYSVG-SNVLESMDYSG 354 (377)
Q Consensus 299 ~----~~~I~r~~ldG~~~-~~l~~~~~~~P~glalD~~~~~LYw~d~~~-~~~i~~~~~~G 354 (377)
. ...+..+++.-... ..+... ..|.||++...+++||++.. . .+.|..+|...
T Consensus 288 ~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~-~~~~~VsVID~~t 346 (368)
T 1mda_H 288 SCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANS-AGTEVLDIYDAAS 346 (368)
T ss_dssp CTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEE-TTTTEEEEEESSS
T ss_pred cccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEcc-CCCCeEEEEECCC
Confidence 0 12444666654322 222221 36999999987778998887 5 89999999884
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-07 Score=88.00 Aligned_cols=159 Identities=6% Similarity=0.008 Sum_probs=105.2
Q ss_pred eEEEEEECCCCEEEEEE------------cCCCcEEEEEcCCC--CcEEEEeccccC-CCCCCCCcceEEEecc---CCe
Q psy5792 187 AAKVDFHAAEDYIYWVD------------IDHGTISRTHRDGT--GRENIIEYVETG-DPTPVDQFTDIAVDWI---AQN 248 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd------------~~~~~I~~~~~~G~--~~~~i~~~~~~~-~~~~~~~p~~iavD~~---~~~ 248 (377)
+..+++++ ++.+|.+. ...|+|++++++.. ..+.+.. .+. .....-+|.||.+... +.+
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~--~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI--IGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE--ECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc--cCCCCCcCceeeeeeEEEECCCCcEE
Confidence 44555555 56777765 24678999888732 2223222 000 0011237999999642 337
Q ss_pred EEEEcCC--CCEEEEEEc--CCCeEEEEee----CCCCCceeEEEcCCCCeEEEEecC----------------CCCeEE
Q psy5792 249 IYWSDPK--ENVIEVARL--TGQYRYVLIS----GGVDQPSALAVDPESGYLFWSESG----------------KIPLIA 304 (377)
Q Consensus 249 lYwtd~~--~~~I~~~~~--~g~~~~~l~~----~~~~~P~~iavdp~~g~lywtd~g----------------~~~~I~ 304 (377)
||++|+. ..+|+++++ ++... +++. ..+..|+.+++|+ .|.+|+++.. ..++|+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEE-EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 9999987 456666554 44443 3332 2478899999997 6888777631 135788
Q ss_pred EEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 305 RAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 305 r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
|.+.+ ..+.+.. ++..||||++++.++.||++|. ..++|.+.++++
T Consensus 207 r~d~~--~~~~~~~-~l~~pNGia~spDg~~lYvadt-~~~~I~~~~~~~ 252 (355)
T 3sre_A 207 YYSPN--DVRVVAE-GFDFANGINISPDGKYVYIAEL-LAHKIHVYEKHA 252 (355)
T ss_dssp EECTT--CCEEEEE-EESSEEEEEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred EEECC--eEEEeec-CCcccCcceECCCCCEEEEEeC-CCCeEEEEEECC
Confidence 88763 4445554 4899999999998899999999 999999999874
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-06 Score=83.86 Aligned_cols=155 Identities=15% Similarity=0.020 Sum_probs=94.1
Q ss_pred eEEEEEECCCCEEEEEEc-----------------CCCcEEEEEcCCCC-------------------cEEEEeccccCC
Q psy5792 187 AAKVDFHAAEDYIYWVDI-----------------DHGTISRTHRDGTG-------------------RENIIEYVETGD 230 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~-----------------~~~~I~~~~~~G~~-------------------~~~i~~~~~~~~ 230 (377)
...|+|++ +++||++-- ..++|.|++++|+. +..+..
T Consensus 141 g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a------ 213 (463)
T 2wg3_C 141 GGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA------ 213 (463)
T ss_dssp EEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE------
T ss_pred CCcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE------
Confidence 55677777 568888732 13689999999841 123444
Q ss_pred CCCCCCcceEEEeccCC------eEEEEcC-CC----CEEEEEEcCCCe---EEEEeeCC--CCCceeEEEcC------C
Q psy5792 231 PTPVDQFTDIAVDWIAQ------NIYWSDP-KE----NVIEVARLTGQY---RYVLISGG--VDQPSALAVDP------E 288 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~------~lYwtd~-~~----~~I~~~~~~g~~---~~~l~~~~--~~~P~~iavdp------~ 288 (377)
.++.+|.+|++|+.++ .+|.+|. .. ..|..+...+.+ ..++.... ...|.|+++-. .
T Consensus 214 -~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~ 292 (463)
T 2wg3_C 214 -HGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERL 292 (463)
T ss_dssp -ECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTT
T ss_pred -ECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhh
Confidence 4788899999998754 5777885 21 245444322211 11111111 14688888842 3
Q ss_pred CCeEEEEecCCCCeEEEEecCCCC---eEEEE-e--------cCCCCceEEEEeCCCCEEEEEEeC------CCCeEEEE
Q psy5792 289 SGYLFWSESGKIPLIARAGLDGKK---QTILA-Q--------EIIMPIKDITLDRKNKRVYWCYSV------GSNVLESM 350 (377)
Q Consensus 289 ~g~lywtd~g~~~~I~r~~ldG~~---~~~l~-~--------~~~~~P~glalD~~~~~LYw~d~~------~~~~i~~~ 350 (377)
.|.+|++++. .+|.++.+++.. ....+ . .....|.++++++ .+.||+++.. ..++|+++
T Consensus 293 ~g~~f~~~~~--g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~p-dG~Lyv~~~~~~~~~~~~G~I~Ri 369 (463)
T 2wg3_C 293 YGSYVFGDRN--GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDE-LGEVYILSSSKSMTQTHNGKLYKI 369 (463)
T ss_dssp TTCEEEEETT--SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECT-TCCEEEEEESSCGGGCSSEEEEEE
T ss_pred cceEEEecCC--CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECC-CCCEEEEeccCCcccCCCCcEEEe
Confidence 4669999985 689999887542 22232 1 1135799999985 6899999971 25788888
Q ss_pred Ec
Q psy5792 351 DY 352 (377)
Q Consensus 351 ~~ 352 (377)
..
T Consensus 370 ~~ 371 (463)
T 2wg3_C 370 VD 371 (463)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-05 Score=76.16 Aligned_cols=223 Identities=11% Similarity=0.100 Sum_probs=145.1
Q ss_pred CcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEc-CCCCceEEEecCCC-ceeEEeeecCC
Q psy5792 38 HSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNS 110 (377)
Q Consensus 38 ~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~ 110 (377)
+.|...|++|. .+++. ........+++ .+.+|+++.... ..|+..+ .+|+... +..... +..+.+ +|+.
T Consensus 159 ~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~-spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF-SPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEE-CTTS
T ss_pred ceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEE-cCCC
Confidence 68999999998 77775 34456778888 556788876543 5788888 5555443 332222 333332 3332
Q ss_pred CCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--CeEEEEEcCCCCceeeEEEEecCCCCceE
Q psy5792 111 GYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG--YDIMGIKYNKNESKVTQVLGPLSKVSLAA 188 (377)
Q Consensus 111 ~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~~~~~ 188 (377)
+ .|+++.... ..|..+++..... ..+ ........
T Consensus 235 ~---------------------------------------~la~~~~~~g~~~i~~~d~~~~~~---~~l--~~~~~~~~ 270 (415)
T 2hqs_A 235 S---------------------------------------KLAFALSKTGSLNLYVMDLASGQI---RQV--TDGRSNNT 270 (415)
T ss_dssp S---------------------------------------EEEEEECTTSSCEEEEEETTTCCE---EEC--CCCSSCEE
T ss_pred C---------------------------------------EEEEEEecCCCceEEEEECCCCCE---EeC--cCCCCccc
Confidence 2 455554322 2488888876533 111 12234577
Q ss_pred EEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEc
Q psy5792 189 KVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARL 264 (377)
Q Consensus 189 ~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~ 264 (377)
.+++.+.+..|+++....+ +|+.+++++...+.+.. ....+..+++.+.++.|+++... ...|.+.++
T Consensus 271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~--------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW--------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC--------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec--------CCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 8899988888888764333 89999998765444332 22346678898888888887654 458999999
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
++...+.+... .....+++.|....|+++... ....|+..+++|...+.+..
T Consensus 343 ~~~~~~~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 343 ATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp TTCCEEECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred CCCCEEEecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 88776555433 378899999988878877642 12389999999877666543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.8e-06 Score=84.30 Aligned_cols=288 Identities=14% Similarity=0.144 Sum_probs=171.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCC-----cEEEEEcCCc-EEEEEeCCCC-----------------------CceEEEE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSH-----SLHYVNIEVK-VAKVVSMPDA-----------------------AQVVAAV 65 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~-----~I~~~~~dG~-~~~i~~~~~~-----------------------~~p~~la 65 (377)
...+..+++.+++++|+++....+ .|...++++. .+.+...... ....+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456889999999999988876444 8999999888 6666521111 1135566
Q ss_pred E--ECCeEEEEcCCCCceEEEcCCCC---ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCcccc
Q psy5792 66 F--YKGRIIYSDANDGNIRSINLDGS---NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLA 139 (377)
Q Consensus 66 v--~~~~ly~td~~~~~I~~~~~~g~---~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~ 139 (377)
+ .+.+|+++.. +.|+.++.++. ....+..... +..+.+ +|+.
T Consensus 116 ~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~-SPDG----------------------------- 163 (741)
T 2ecf_A 116 WSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKL-SPKG----------------------------- 163 (741)
T ss_dssp ECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEE-CTTS-----------------------------
T ss_pred ECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccC-CCCC-----------------------------
Confidence 7 4556777765 77888884332 3222222112 333332 3332
Q ss_pred CCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC----------------ceEEEEEECCCCEEEEEE
Q psy5792 140 AKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS----------------LAAKVDFHAAEDYIYWVD 203 (377)
Q Consensus 140 ~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~----------------~~~~l~~d~~~~~ly~sd 203 (377)
..|+++.... |+.+++++... ..+. ..... .+.++++.+.+.+|+++.
T Consensus 164 ----------~~la~~~~~~--i~~~d~~~g~~---~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 164 ----------GFVSFIRGRN--LWVIDLASGRQ---MQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp ----------SEEEEEETTE--EEEEETTTTEE---EECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred ----------CEEEEEeCCc--EEEEecCCCCE---EEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 2466666554 88888876532 1111 11111 136688888888888875
Q ss_pred cCCC--------------------------------cEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 204 IDHG--------------------------------TISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 204 ~~~~--------------------------------~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
...+ .|+.+++++ .....+... ...-..+..+++ +.++.|+
T Consensus 228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~ 301 (741)
T 2ecf_A 228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG-----KEQDIYLARVNW-RDPQHLS 301 (741)
T ss_dssp EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC-----SCSSEEEEEEEE-EETTEEE
T ss_pred EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC-----CCcceEEEEEEe-CCCCEEE
Confidence 4321 666677765 444333220 001123667888 8788888
Q ss_pred EEcC----CCCEEEEEEcCCCeEEEEeeCCCC----CceeEEEcCCCCeEEEEe-cCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 251 WSDP----KENVIEVARLTGQYRYVLISGGVD----QPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQTILAQEII 321 (377)
Q Consensus 251 wtd~----~~~~I~~~~~~g~~~~~l~~~~~~----~P~~iavdp~~g~lywtd-~g~~~~I~r~~ldG~~~~~l~~~~~ 321 (377)
++.. ...+|.+.++++.....+...... ....+++.|.+. ++++. .....+|++.+++|. .+.+....
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~- 378 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGN- 378 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSS-
T ss_pred EEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecc-
Confidence 7643 235799999987665555443111 335789998655 55553 322468999998887 55544332
Q ss_pred CCceEE-EEeCCCCEEEEEEeCC----CCeEEEEEccCCceEEE
Q psy5792 322 MPIKDI-TLDRKNKRVYWCYSVG----SNVLESMDYSGGSKMQL 360 (377)
Q Consensus 322 ~~P~gl-alD~~~~~LYw~d~~~----~~~i~~~~~~G~~~~~~ 360 (377)
.....+ ++++.+++||++.. . ...|+.++.+|...+.+
T Consensus 379 ~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l~~~~~~g~~~~~l 421 (741)
T 2ecf_A 379 WSVDELLAVDEKAGLAYFRAG-IESARESQIYAVPLQGGQPQRL 421 (741)
T ss_dssp SCEEEEEEEETTTTEEEEEEC-SSCTTCBEEEEEETTCCCCEEC
T ss_pred eEEEeEeEEeCCCCEEEEEEe-CCCCceEEEEEEEcCCCCeeec
Confidence 234455 58888888988765 4 34688888876544433
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-06 Score=77.47 Aligned_cols=207 Identities=8% Similarity=0.029 Sum_probs=140.5
Q ss_pred CCcCCccccccCCCCeEEEEeCCC---------------CcEEEEEcCC---c-EEEEEeC----CCCCceEEEEEE---
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLS---------------HSLHYVNIEV---K-VAKVVSM----PDAAQVVAAVFY--- 67 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~---------------~~I~~~~~dG---~-~~~i~~~----~~~~~p~~lav~--- 67 (377)
.|..+-++.+|. .+||+++|++. -+|..+|+.. + ++++.-. ........|+|.
T Consensus 85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~ 163 (381)
T 3q6k_A 85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN 163 (381)
T ss_dssp SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence 377888999997 57999999872 1577888854 5 5555411 123456778886
Q ss_pred ------CCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccC
Q psy5792 68 ------KGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAA 140 (377)
Q Consensus 68 ------~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~ 140 (377)
+.++|+||.....|.+++ .+|+..++++....| +..
T Consensus 164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p--------d~~----------------------------- 206 (381)
T 3q6k_A 164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA--------ERP----------------------------- 206 (381)
T ss_dssp TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC--------CSC-----------------------------
T ss_pred CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc--------ccC-----------------------------
Confidence 578999999999999999 778777776432112 100
Q ss_pred CcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECC----CCEEEEEEcCCCcEEEEEcC-
Q psy5792 141 KVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA----EDYIYWVDIDHGTISRTHRD- 215 (377)
Q Consensus 141 G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~----~~~ly~sd~~~~~I~~~~~~- 215 (377)
..+ .++|... .+ ...+.+|++.+. ++.|||.-..+.+++++...
T Consensus 207 ----------~~~------------~i~G~~~-----~~----~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~ 255 (381)
T 3q6k_A 207 ----------TKF------------DYGGKEY-----EF----KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKE 255 (381)
T ss_dssp ----------EEE------------EETTEEE-----EE----CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHH
T ss_pred ----------cce------------EECCEEe-----Ee----ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHH
Confidence 111 1111100 00 124677777776 78999999988899999842
Q ss_pred ---CC---CcEEEEeccccCCCCC-CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC-C----eEEEEee-CCCCCcee
Q psy5792 216 ---GT---GRENIIEYVETGDPTP-VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG-Q----YRYVLIS-GGVDQPSA 282 (377)
Q Consensus 216 ---G~---~~~~i~~~~~~~~~~~-~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g-~----~~~~l~~-~~~~~P~~ 282 (377)
.+ ..+.+.. .+ ..+..++++|..+|+||+++-..+.|.+-+.++ . ...++.. ..+..|.+
T Consensus 256 L~~~~~~~~v~~~G~-------kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~ 328 (381)
T 3q6k_A 256 LKQKGGKLNPELLGN-------RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTD 328 (381)
T ss_dssp HSSTTCCCCCEEEEE-------CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEE
T ss_pred hhCcchhhceEEeee-------cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCe
Confidence 21 2233332 22 234557899877899999999999999999998 3 3455554 35788999
Q ss_pred EEEcCCCCeEEEEec
Q psy5792 283 LAVDPESGYLFWSES 297 (377)
Q Consensus 283 iavdp~~g~lywtd~ 297 (377)
+++|. +|+||+...
T Consensus 329 ~~i~~-~g~Lwv~sn 342 (381)
T 3q6k_A 329 ISVDS-KGGLWFMSN 342 (381)
T ss_dssp EEECT-TSCEEEEEC
T ss_pred EEECC-CCeEEEEEC
Confidence 99996 789999863
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-05 Score=69.99 Aligned_cols=247 Identities=11% Similarity=0.032 Sum_probs=150.1
Q ss_pred CCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC-C-CCceEEEecCC-C-ceeEEeeec
Q psy5792 36 LSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL-D-GSNSTVLRNNA-G-ISDFILFSV 108 (377)
Q Consensus 36 ~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~-~-g~~~~~~~~~~-~-p~~i~v~~~ 108 (377)
..+.|...++++. .+.+. .....+.++++ .+.+|+++. .+.|...+. + ++...+..... . +..+.+ ++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-sp 94 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI-SP 94 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE-CT
T ss_pred cceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEE-CC
Confidence 4567888888777 66555 33445777888 455666664 567888884 4 43333221110 1 222221 11
Q ss_pred CCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC---CCeEEEEEcCCCCceeeEEEEecCCCC
Q psy5792 109 NSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS---GYDIMGIKYNKNESKVTQVLGPLSKVS 185 (377)
Q Consensus 109 ~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~---~~~I~~~~l~~~~~~~~~~~~~~~~~~ 185 (377)
+ ...++++... ...|..+++++... ..+....
T Consensus 95 d---------------------------------------g~~l~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~ 129 (297)
T 2ojh_A 95 D---------------------------------------GALYAISDKVEFGKSAIYLLPSTGGTP------RLMTKNL 129 (297)
T ss_dssp T---------------------------------------SSEEEEEECTTTSSCEEEEEETTCCCC------EECCSSS
T ss_pred C---------------------------------------CCEEEEEEeCCCCcceEEEEECCCCce------EEeecCC
Confidence 1 1245555521 23577777766533 1223334
Q ss_pred ceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC--CCCEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP--KENVIEV 261 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~--~~~~I~~ 261 (377)
.+..+++.+.+..|+++....+ .|+.+++++.....+. .....+..+++.+.++.|+++.. ...+|+.
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT--------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC--------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc--------cCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 4778889888888887665555 6667777654443332 23345788999887777887753 3457888
Q ss_pred EEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC---------CCeEEEEecCCCCeEEEEe--cCCCCceEEEEe
Q psy5792 262 ARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK---------IPLIARAGLDGKKQTILAQ--EIIMPIKDITLD 330 (377)
Q Consensus 262 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~---------~~~I~r~~ldG~~~~~l~~--~~~~~P~glalD 330 (377)
.++++.....+.. .......++++|...+|+++.... ...|+..++++...+.+.. ..-..+..+++.
T Consensus 202 ~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 280 (297)
T 2ojh_A 202 VRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS 280 (297)
T ss_dssp EETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred ECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence 8877766555543 234567899999888888875421 2568899998776555543 212345667787
Q ss_pred CCCCEEEEEEe
Q psy5792 331 RKNKRVYWCYS 341 (377)
Q Consensus 331 ~~~~~LYw~d~ 341 (377)
+.+.+|+++..
T Consensus 281 pdg~~l~~~~~ 291 (297)
T 2ojh_A 281 PDGDEFAYVRY 291 (297)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 77788888765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-05 Score=74.79 Aligned_cols=193 Identities=11% Similarity=0.047 Sum_probs=131.3
Q ss_pred EEEEEeCCC--CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEecc
Q psy5792 151 FILFSVNSG--YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYV 226 (377)
Q Consensus 151 ~l~~s~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~ 226 (377)
.|+++..+. ..|+..++..... ..+. .....+.++++.+.+..|+++.... ..|+.+++++.....+..
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~---~~l~--~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-- 264 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAV---RQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-- 264 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE---EEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC--
T ss_pred EEEEEEecCCCcEEEEEECCCCcE---EEee--cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC--
Confidence 355554331 2488888876543 1222 2234578899999888899876543 469999998655433332
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeE
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLI 303 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I 303 (377)
.-.....+++.+.++.|+++... ..+|++.++++...+.+.. .......+++.|...+|+++.... ...|
T Consensus 265 ------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i 337 (415)
T 2hqs_A 265 ------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHI 337 (415)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred ------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCCceEE
Confidence 23457788888877778877543 3489999998876544433 234567899999888898887531 3689
Q ss_pred EEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCC--eEEEEEccCCceEEE
Q psy5792 304 ARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN--VLESMDYSGGSKMQL 360 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~--~i~~~~~~G~~~~~~ 360 (377)
+..++++...+.+... .....+++.+.+..|+++.. ..+ .|+.++++|+..+++
T Consensus 338 ~~~d~~~~~~~~l~~~--~~~~~~~~spdg~~l~~~s~-~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 338 AKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSS-QGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEE-ETTEEEEEEEETTSCCEEEC
T ss_pred EEEECCCCCEEEecCC--CCcCCeEEcCCCCEEEEEEc-CCCccEEEEEECCCCcEEEe
Confidence 9999987766554433 36788999888888888776 544 899999998766555
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-05 Score=73.76 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=122.7
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCC-------EEEEEEcC--CCcEEEEEcCCCCcEEE
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED-------YIYWVDID--HGTISRTHRDGTGRENI 222 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~-------~ly~sd~~--~~~I~~~~~~G~~~~~i 222 (377)
++++....+-+..++++|... +. +. ..++.++++-+.-. .+|.++.. .++|..+.++....+ +
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l---~~---~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKML---HS---YN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEE---EE---EC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred EEEEEcCCCCEEEEcCCCcEE---EE---cc-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 344443334599999987744 22 22 25677777665221 56889988 888888877632221 2
Q ss_pred EeccccCCC--CCCCCcceEEE--eccCC--eEEEEcCCCCEEEEEEc----CCCeEEEEeeC--CCCCceeEEEcCCCC
Q psy5792 223 IEYVETGDP--TPVDQFTDIAV--DWIAQ--NIYWSDPKENVIEVARL----TGQYRYVLISG--GVDQPSALAVDPESG 290 (377)
Q Consensus 223 ~~~~~~~~~--~~~~~p~~iav--D~~~~--~lYwtd~~~~~I~~~~~----~g~~~~~l~~~--~~~~P~~iavdp~~g 290 (377)
........+ ..+..|+||++ ++.++ .+|+++.. +++....+ +|.....++.. --.+|.++++|+..|
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence 110000001 44578999999 87666 47777776 78877555 23232233321 235799999999999
Q ss_pred eEEEEecCCCCeEEEEecCCCC---eEEEEe---cCCC-CceEEEEeCCC---CEEEEEEeCCCCeEEEEEccCC
Q psy5792 291 YLFWSESGKIPLIARAGLDGKK---QTILAQ---EIIM-PIKDITLDRKN---KRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ldG~~---~~~l~~---~~~~-~P~glalD~~~---~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
+||++++. ..|++.+.+... .+.+.. ..+. .|-||+|.+.. ++|+.++. +.++...++..+.
T Consensus 193 ~Lyv~eEd--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~~~ 264 (355)
T 3amr_A 193 RLYIAEED--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQGK 264 (355)
T ss_dssp EEEEEETT--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTT
T ss_pred eEEEeccc--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECCCC
Confidence 99999974 569999966332 333322 1233 79999997543 58999999 8888888888754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.67 E-value=0.00038 Score=69.05 Aligned_cols=278 Identities=13% Similarity=0.123 Sum_probs=174.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVL 94 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~ 94 (377)
.+.++++.+++..|... ...+.|...+.++. .+.+. .....+.++++ .++....+-..++.|...+.+++....+
T Consensus 223 ~v~~~~~s~dg~~l~~~-~~d~~i~~w~~~~~~~~~~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~ 299 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299 (577)
T ss_dssp CEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEE-eCCCEEEEEeCCCCEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEE
Confidence 56778888877666544 45677888899888 77664 45556788888 3445555555567777777777666555
Q ss_pred ecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 95 RNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 95 ~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
..... +.++++ +++.+ .+++....+.|+..++++...
T Consensus 300 ~~h~~~v~~~~~-~~~~~----------------------------------------~l~t~~~d~~i~~w~~~~~~~- 337 (577)
T 2ymu_A 300 TGHSSSVWGVAF-SPDGQ----------------------------------------TIASASDDKTVKLWNRNGQHL- 337 (577)
T ss_dssp CCCSSCEEEEEE-CTTSS----------------------------------------EEEEEETTSCEEEEETTSCEE-
T ss_pred ecCCCCeEEEEE-CCCCC----------------------------------------EEEEEeCCCeEEEEeCCCCee-
Confidence 43333 445543 33222 333333334577777765422
Q ss_pred eeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
.........+.++++.+.+..|.... ..+.|...+.++.....+.. .-..+.++++.+.+..|. +-
T Consensus 338 ----~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~~~~~~~~~~~~~~~--------~~~~v~~~~~s~dg~~l~-~~ 403 (577)
T 2ymu_A 338 ----QTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTG--------HSSSVRGVAFSPDGQTIA-SA 403 (577)
T ss_dssp ----EEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTCCEEEEEEC--------CSSCEEEEEECTTSSCEE-EE
T ss_pred ----EEEeCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEcCCCCEEEEecC--------CCCCeEEEEECCCCCEEE-EE
Confidence 11112334578899998777766554 56788888887654444432 344688999997655554 44
Q ss_pred CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 254 ~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
...+.|.+.+.+++....+.. .-....++++.|.+.+|..+.. ...|...++++.....+... -.....+++.+.+
T Consensus 404 ~~d~~v~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~--d~~v~~w~~~~~~~~~~~~~-~~~v~~~~~spd~ 479 (577)
T 2ymu_A 404 SDDKTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDDQTIASASD--DKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDG 479 (577)
T ss_dssp ETTSEEEEECTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTSCEEEEEECC-SSCEEEEEECTTS
T ss_pred eCCCEEEEEeCCCCEEEEecC-CCCCeEEEEECCCCCEEEEEcC--CCEEEEEECCCCEEEEEcCC-CCCEEEEEEcCCC
Confidence 455789998988877666544 3455789999997777666553 46777778877665555443 3556788987655
Q ss_pred CEEEEEEeCCCCeEEEEEccCCceEE
Q psy5792 334 KRVYWCYSVGSNVLESMDYSGGSKMQ 359 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~G~~~~~ 359 (377)
..|. +-. ..+.|...+.+|.-.++
T Consensus 480 ~~la-s~~-~d~~i~iw~~~~~~~~~ 503 (577)
T 2ymu_A 480 QTIA-SAS-DDKTVKLWNRNGQLLQT 503 (577)
T ss_dssp CEEE-EEE-TTSEEEEEETTSCEEEE
T ss_pred CEEE-EEe-CCCEEEEEcCCCCEEEE
Confidence 5444 444 46677777776543333
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-05 Score=71.13 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=107.3
Q ss_pred CceEEEEEE-C------CCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC------CC-----CCCcceEEEecc-
Q psy5792 185 SLAAKVDFH-A------AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP------TP-----VDQFTDIAVDWI- 245 (377)
Q Consensus 185 ~~~~~l~~d-~------~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~------~~-----~~~p~~iavD~~- 245 (377)
+....+.+| . .++++|++|.....|.++++.......+....-.... .+ .....|||+.+.
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 446677777 2 1679999998888888888864332222211000000 01 135889999987
Q ss_pred ---CCeEEEEcCCCCEEEEEEc---C-C---CeEEEEeeCC-CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC----
Q psy5792 246 ---AQNIYWSDPKENVIEVARL---T-G---QYRYVLISGG-VDQPSALAVDPESGYLFWSESGKIPLIARAGLDG---- 310 (377)
Q Consensus 246 ---~~~lYwtd~~~~~I~~~~~---~-g---~~~~~l~~~~-~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG---- 310 (377)
.+.|||.--...++++... . . ...+.+.+.+ ..+..++++|+.+|.||+++.. ...|.+.+.++
T Consensus 232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~~~ 310 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMPLR 310 (381)
T ss_dssp TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCSBC
T ss_pred CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCccc
Confidence 7899999988888888873 2 1 1223333322 2345578998779999999985 78999999887
Q ss_pred -CCeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 311 -KKQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 311 -~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
.+..++++. .+.+|.++++|. ++.||+... ...
T Consensus 311 ~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~sn-~l~ 345 (381)
T 3q6k_A 311 MKNTDVVYTSSRFVFGTDISVDS-KGGLWFMSN-GFP 345 (381)
T ss_dssp GGGEEEEEECTTCCSEEEEEECT-TSCEEEEEC-SCC
T ss_pred cCceEEEEECCCccccCeEEECC-CCeEEEEEC-cch
Confidence 355666665 488999999984 678999887 543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-05 Score=72.65 Aligned_cols=295 Identities=9% Similarity=0.044 Sum_probs=160.9
Q ss_pred ccccCCCCeEEEEeCCCC--cEEEEEcCCc-EEEEEeCCCCCce-EEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 21 TLKPQSGPFVYGVKTLSH--SLHYVNIEVK-VAKVVSMPDAAQV-VAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 21 ~~~d~~~~~ly~~d~~~~--~I~~~~~dG~-~~~i~~~~~~~~p-~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.++.+++++|+++....+ .|..+++++. .+.+. .....+ .++++ .+.+|+++.. ...|+.++ .+|+...+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~ 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT--EGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENVV 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC--CSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee--eCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcceee
Confidence 678888888888776444 6999999988 77664 222222 24456 5667888874 35788888 55554444
Q ss_pred EecCCC-c-eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc-----cCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 94 LRNNAG-I-SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL-----AAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 94 ~~~~~~-p-~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~-----~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
...... . .+..+.+++... -.+........ ..+|.. .+.......|..++
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~---------------l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTK---------------LVGIEIRREDWVPLTDWKKFHE--------FYFTKPCCRLMRVD 174 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSE---------------EEEEEEEGGGCCCCCSHHHHHH--------HGGGCCCEEEEEEE
T ss_pred eechhhcccccceeECCCCCe---------------eccccccCcccccccccchhhh--------hhccCCcceEEEEE
Confidence 432222 1 111122222110 00000000000 000000 00000112377777
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEEC-CCCEEEEEEcC-----CCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcce
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHA-AEDYIYWVDID-----HGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTD 239 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~-~~~~ly~sd~~-----~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~ 239 (377)
+.+... ..+.. .......+++.+ .++.|.++... ...|+.++.+|...+.+.. ... .....
T Consensus 175 ~~~g~~---~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~~~~~ 242 (388)
T 3pe7_A 175 LKTGES---TVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT-------HAEGESCTH 242 (388)
T ss_dssp TTTCCE---EEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC-------CCTTEEEEE
T ss_pred CCCCce---EEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee-------CCCCccccc
Confidence 765533 22221 223466788888 67778776543 3489999998876555543 111 12445
Q ss_pred EEEeccCCeEEEE-cCCCC---EEEEEEcCCCeEEEEeeCCC-----CCceeEEEcCCCCeEEEEec-------CCCCeE
Q psy5792 240 IAVDWIAQNIYWS-DPKEN---VIEVARLTGQYRYVLISGGV-----DQPSALAVDPESGYLFWSES-------GKIPLI 303 (377)
Q Consensus 240 iavD~~~~~lYwt-d~~~~---~I~~~~~~g~~~~~l~~~~~-----~~P~~iavdp~~g~lywtd~-------g~~~~I 303 (377)
.++.+.++.|+++ +.... .|++.++++...+.+..... ..|.++++.|...+|+++-. .....|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 6777767777554 33222 49999998776555543211 12555677777777777531 235789
Q ss_pred EEEecCCCCeEEEEecCCC----------CceEEEEeCCCCEEEEEEeC-CCCeEEEEEcc
Q psy5792 304 ARAGLDGKKQTILAQEIIM----------PIKDITLDRKNKRVYWCYSV-GSNVLESMDYS 353 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~~~~----------~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~ 353 (377)
+..++++...+.+...... ....+++.+.+++|+++... +...|+.+++.
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 9999998776666654210 34567888888899988651 33467776665
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00028 Score=66.44 Aligned_cols=287 Identities=12% Similarity=-0.010 Sum_probs=164.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECC-eEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKG-RIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~-~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.+++..+.+..|+.. ...+.|...+.+|. ...+. ........+++ .++ .|+.+ ..++.|...+ .+++...
T Consensus 110 ~v~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTG-VENGELRLWNKTGALLNVLN--FHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CEEEEEECTTSSEEEEE-ETTSCEEEEETTSCEEEEEC--CCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCeeeecc--CCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEE
Confidence 67888898876666544 45678999998888 77663 45566788888 333 45544 4567788888 5565544
Q ss_pred EEecCCCc-eeEEeeecCCCCcccCCCcCCCCCC--ceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 93 VLRNNAGI-SDFILFSVNSGYDIMGIKYNKNESK--VQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 93 ~~~~~~~p-~~i~v~~~~~~~~~~~~~C~~~~g~--Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
.+.....+ ..+.. ......+ ...++. .++..+ ++....+.|+.+++..
T Consensus 186 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~---------------~~~~~~-~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 186 HFELKETGGSSINA-------------ENHSGDGSLGVDVEW---------------VDDDKF-VIPGPKGAIFVYQITE 236 (425)
T ss_dssp EECCC----------------------------CCCBSCCEE---------------EETTEE-EEECGGGCEEEEETTC
T ss_pred EeeccccCccceee-------------ccccCCcceeeEEEE---------------cCCCEE-EEEcCCCeEEEEEcCC
Confidence 44321111 00000 0000000 000000 111233 3333344688888876
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
... ...+ ......+..+++.+.+..|+.+. ..+.|...++.......... ..-..+.++++.+.+ +
T Consensus 237 ~~~--~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~--~ 302 (425)
T 1r5m_A 237 KTP--TGKL--IGHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNSQNCFY-------GHSQSIVSASWVGDD--K 302 (425)
T ss_dssp SSC--SEEE--CCCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBSCSEEEC-------CCSSCEEEEEEETTT--E
T ss_pred Cce--eeee--ccCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCccceEec-------CCCccEEEEEECCCC--E
Confidence 533 1111 12344578899998777666555 56788888876543333333 234457888888644 6
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-----------------
Q psy5792 250 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK----------------- 312 (377)
Q Consensus 250 Ywtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~----------------- 312 (377)
+++-...+.|.+.++........+......+..++++|...+|+.+.. .+.|...++....
T Consensus 303 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 380 (425)
T 1r5m_A 303 VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM--DGQVNVYDLKKLNSKSRSLYGNRDGILNPL 380 (425)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET--TSCEEEEECHHHHC--------------CE
T ss_pred EEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC--CCeEEEEECCCCccceeeeecccccccCcc
Confidence 666667789999999766554444444566899999997666666653 4567766665332
Q ss_pred ---eEEEEecCCC--CceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 313 ---QTILAQEIIM--PIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 313 ---~~~l~~~~~~--~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
....+..... .+..+++.+.+..|+.+. ..+.|...+++|
T Consensus 381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~g 425 (425)
T 1r5m_A 381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY--SLQEGSVVAIPG 425 (425)
T ss_dssp ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE--SSSCCEEEECCC
T ss_pred cchhhhhhcCcccCCceEEEEccCCCceEEEEe--cCceEEEEeecC
Confidence 2222222122 677888876666665554 355666666553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-05 Score=73.46 Aligned_cols=193 Identities=9% Similarity=0.064 Sum_probs=122.1
Q ss_pred eEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECC---------eEEEEcCC--CCceEEE--cCCCCceEEE
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKG---------RIIYSDAN--DGNIRSI--NLDGSNSTVL 94 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~---------~ly~td~~--~~~I~~~--~~~g~~~~~~ 94 (377)
.+++.-...+.+..+|++|+ +..+ +. ..+.++++..+ .+|.++.. .++|..+ +.+....+.+
T Consensus 41 s~ii~t~k~~gL~Vydl~G~~l~~~---~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGKMLHSY---NT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEETTSCEEEEE---CC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEEcCCCCEEEEcCCCcEEEEc---cC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 34555555678999999999 7766 33 57888887333 46999988 8888777 4222223333
Q ss_pred e-------cC-CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 95 R-------NN-AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 95 ~-------~~-~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
. .. ..|.|+++|..... ..-+++++.. .|.+..+.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~------------------------------------g~~yafV~~k-~G~~~q~~ 159 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKT------------------------------------GKYYAMVTGK-EGEFEQYE 159 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTT------------------------------------CCEEEEEECS-SSEEEEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCC------------------------------------CcEEEEEECC-CCeEEEEE
Confidence 2 22 23888888765321 0013444444 46787766
Q ss_pred cC--CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCC-cEEEEeccccCCCCCCC-CcceE
Q psy5792 167 YN--KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTG-RENIIEYVETGDPTPVD-QFTDI 240 (377)
Q Consensus 167 l~--~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~-~~~i~~~~~~~~~~~~~-~p~~i 240 (377)
+. +...-....+-.+...+.+.++.+|...++||+++... .|++++.+ +.. .+.+.. ... ..+. .|+||
T Consensus 160 l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~-~~~---g~l~aDvEGL 234 (355)
T 3amr_A 160 LKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDR-ADG---RHLTRDIEGL 234 (355)
T ss_dssp EEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEE-BSS---SSBCSCEEEE
T ss_pred EEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEE-ecC---CccccCcceE
Confidence 62 22110012233344456899999999999999999774 59999954 322 233322 000 2333 69999
Q ss_pred EEeccC---CeEEEEcCCCCEEEEEEcCCC
Q psy5792 241 AVDWIA---QNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 241 avD~~~---~~lYwtd~~~~~I~~~~~~g~ 267 (377)
++.... +.|+.+++.+++..+++..+.
T Consensus 235 ai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 235 TIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp EEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 996433 579999999999999999754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.61 E-value=0.0003 Score=64.05 Aligned_cols=188 Identities=9% Similarity=0.008 Sum_probs=119.8
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++.+. ..+.|+..++..... ............+..+++.+.++.|+... ..+.|...++..........
T Consensus 112 l~~~~-~d~~i~~~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~------- 180 (337)
T 1gxr_A 112 LIVGG-EASTLSIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQ------- 180 (337)
T ss_dssp EEEEE-SSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEEC-------
T ss_pred EEEEc-CCCcEEEEECCCCCc--ceeeecccCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeee-------
Confidence 44433 334588888876542 11111112344578999998767776665 56789989987543333333
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
.....+.++++.+.+. .+++-...+.|.+.++.......... ....+..++++|....|+.... ...|...++...
T Consensus 181 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--~~~i~~~~~~~~ 256 (337)
T 1gxr_A 181 GHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME--SSNVEVLHVNKP 256 (337)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET--TSCEEEEETTSS
T ss_pred cccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC--CCcEEEEECCCC
Confidence 2344588899987544 44555566899999998765544444 2455789999997777777763 468888888876
Q ss_pred CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCce
Q psy5792 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 312 ~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
....+... -..+..+++.+.++.|+ +-. ..+.|...++..+..
T Consensus 257 ~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~-~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 257 DKYQLHLH-ESCVLSLKFAYCGKWFV-STG-KDNLLNAWRTPYGAS 299 (337)
T ss_dssp CEEEECCC-SSCEEEEEECTTSSEEE-EEE-TTSEEEEEETTTCCE
T ss_pred CeEEEcCC-ccceeEEEECCCCCEEE-Eec-CCCcEEEEECCCCeE
Confidence 65544332 35678899986555554 445 577888888875443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00053 Score=67.96 Aligned_cols=278 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVL 94 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~ 94 (377)
.+.++++.+.+..|. +-+..+.|...+.++. .+.+. .......++++ .++....+-..++.|...+.++.....+
T Consensus 264 ~v~~v~~~~d~~~l~-~~~~d~~i~~w~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~ 340 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIA-SASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL 340 (577)
T ss_dssp CEEEEEECTTSSEEE-EEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEE-EEeCCCEEEEEeCCCcEEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE
Confidence 566778877665554 4455678888899998 77664 45566788888 3445555555667788778666665555
Q ss_pred ecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 95 RNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 95 ~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
..... +.++++ +++.+ .++.+.. .+.|+..+..+...
T Consensus 341 ~~~~~~v~~~~~-s~~g~---------------------------------------~l~~~~~-dg~v~~~~~~~~~~- 378 (577)
T 2ymu_A 341 TGHSSSVWGVAF-SPDGQ---------------------------------------TIASASD-DKTVKLWNRNGQLL- 378 (577)
T ss_dssp CCCSSCEEEEEE-CTTSS---------------------------------------EEEEEET-TSEEEEEETTCCEE-
T ss_pred eCCCCCEEEEEE-CCCCC---------------------------------------EEEEEeC-CCEEEEEcCCCCEE-
Confidence 43222 444433 22221 3333333 33577666554321
Q ss_pred eeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
..+ ......+.++++.+.+..|.... ..+.|...+.++...+.+.. .-..+.++++.+.+..| .+-
T Consensus 379 --~~~--~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l-~~~ 444 (577)
T 2ymu_A 379 --QTL--TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTG--------HSSSVWGVAFSPDDQTI-ASA 444 (577)
T ss_dssp --EEE--ECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCCEEEEEEC--------CSSCEEEEEECTTSSEE-EEE
T ss_pred --EEe--cCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCEEEEecC--------CCCCeEEEEECCCCCEE-EEE
Confidence 111 12334578899988666665554 56778877777654444432 33457889998755544 455
Q ss_pred CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 254 ~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
...+.|...+++++....+.. ......++++.|...+|..+.. ...|...+.+|...+.+... -...+.+++.+.+
T Consensus 445 ~~d~~v~~w~~~~~~~~~~~~-~~~~v~~~~~spd~~~las~~~--d~~i~iw~~~~~~~~~~~~h-~~~v~~l~~s~dg 520 (577)
T 2ymu_A 445 SDDKTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD--DKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDG 520 (577)
T ss_dssp ETTSEEEEEETTSCEEEEEEC-CSSCEEEEEECTTSCEEEEEET--TSEEEEEETTSCEEEEEECC-SSCEEEEEECTTS
T ss_pred cCCCEEEEEECCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeC--CCEEEEEcCCCCEEEEEeCC-CCCEEEEEEcCCC
Confidence 556789999998887666654 3556789999996666655543 46777777887766655443 3567889997655
Q ss_pred CEEEEEEeCCCCeEEEEEccCCceEE
Q psy5792 334 KRVYWCYSVGSNVLESMDYSGGSKMQ 359 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~G~~~~~ 359 (377)
..|. +-. ..+.|.-.+++|...++
T Consensus 521 ~~l~-s~~-~dg~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 521 QTIA-SAS-DDKTVKLWNRNGQLLQT 544 (577)
T ss_dssp SCEE-EEE-TTSEEEEECTTSCEEEE
T ss_pred CEEE-EEE-CcCEEEEEeCCCCEEEE
Confidence 5554 444 56778777777643333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00064 Score=70.41 Aligned_cols=280 Identities=11% Similarity=0.054 Sum_probs=170.9
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
+.+.+++++++++.|.... ..+.|...++... ..++. .......++++ .+..|..+ ..++.|...+ .+|+.
T Consensus 14 ~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEK 89 (814)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEe--cCCCcEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcE
Confidence 3678999999888776654 5688999997655 55554 44556788888 33445544 4467888888 66766
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
...+..... +..+.+ +++. .+|+.+. ..|.|+..+++.
T Consensus 90 ~~~~~~~~~~v~~~~~-s~~~---------------------------------------~~l~~~~-~dg~i~vw~~~~ 128 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAV-HPTK---------------------------------------PYVLSGS-DDLTVKLWNWEN 128 (814)
T ss_dssp EEEEECCSSCEEEEEE-CSSS---------------------------------------SEEEEEE-TTSEEEEEEGGG
T ss_pred EEEEecCCCCEEEEEE-eCCC---------------------------------------CEEEEEc-CCCEEEEEECCC
Confidence 666553333 444443 3322 1344443 334688888765
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCCCCCCCcceEEEecc-CC
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDPTPVDQFTDIAVDWI-AQ 247 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~~~~~~p~~iavD~~-~~ 247 (377)
... ..... ......+..+++.+.++.++++-...+.|...++...... .+.. .....+..+++.+. .+
T Consensus 129 ~~~--~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 198 (814)
T 3mkq_A 129 NWA--LEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-------GQERGVNYVDYYPLPDK 198 (814)
T ss_dssp TSE--EEEEE-ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC-------CCTTCCCEEEECCSTTC
T ss_pred Cce--EEEEE-cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec-------CCCCCEEEEEEEECCCC
Confidence 422 11111 1233457889998855556666557789999998654433 3332 22245777888762 34
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gl 327 (377)
.++++-...++|.+.++........+.........++++|....|+.... .+.|...++...............+..+
T Consensus 199 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--DGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 55566666789999998776654444544566789999996666665543 4677777776544333333333556677
Q ss_pred EEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 328 TLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 328 alD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
++.+.+..++.+-. ..+.+..+++.
T Consensus 277 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 301 (814)
T 3mkq_A 277 ATHPTGRKNYIASG-FDNGFTVLSLG 301 (814)
T ss_dssp EECTTCGGGEEEEE-ETTEEEEEECS
T ss_pred EEccCCCceEEEEE-eCCCEEEEEcC
Confidence 77665555544444 44555555543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-05 Score=67.67 Aligned_cols=194 Identities=10% Similarity=0.044 Sum_probs=128.8
Q ss_pred EEEEEeCCCCeEEEEEcCC-CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC---CCcEEEEEcCCCCcEEEEecc
Q psy5792 151 FILFSVNSGYDIMGIKYNK-NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID---HGTISRTHRDGTGRENIIEYV 226 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~---~~~I~~~~~~G~~~~~i~~~~ 226 (377)
.|+++... .|..+++++ ... ..+........+..+++.+.+..|+++... ...|+.++.++...+.+..
T Consensus 55 ~l~~~~~~--~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 127 (297)
T 2ojh_A 55 YLLLNSEG--LLYRLSLAGDPSP---EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-- 127 (297)
T ss_dssp EEEEEETT--EEEEEESSSCCSC---EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS--
T ss_pred EEEEEcCC--eEEEEeCCCCCCc---eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec--
Confidence 46665544 499999887 543 222212222446678888888889888743 4689989887655444332
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCCCC--EEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeE
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN--VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLI 303 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I 303 (377)
...+..+++.+.++.|+++....+ +|+..++++.....+.. ....+..++++|...+|+++.. ....+|
T Consensus 128 -------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 199 (297)
T 2ojh_A 128 -------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQI 199 (297)
T ss_dssp -------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-SSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred -------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-CCCccccceECCCCCEEEEEecCCCCccE
Confidence 224777888877778887665545 56666677665544433 3456789999998888888753 235788
Q ss_pred EEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC----------CeEEEEEccCCceEEEE
Q psy5792 304 ARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS----------NVLESMDYSGGSKMQLK 361 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~----------~~i~~~~~~G~~~~~~~ 361 (377)
+..++++.....+... -.....+++++.++.|+++.. .. ..|...+++++..+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 200 WRVRVDGSSVERITDS-AYGDWFPHPSPSGDKVVFVSY-DADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEETTSSCEEECCCC-SEEEEEEEECTTSSEEEEEEE-ETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EEECCCCCCcEEEecC-CcccCCeEECCCCCEEEEEEc-CCCCCcccccCceEEEEEecCCCCceeee
Confidence 8888887766555433 234567888888888888766 42 56999999877655554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-05 Score=76.56 Aligned_cols=284 Identities=9% Similarity=0.021 Sum_probs=161.7
Q ss_pred CCccccccCCCCeEEEEeC--C---CCcEEEEEcCCcEEEEEeCCCCCceE---------EEEEE----CCe-EEEEcCC
Q psy5792 17 AVASTLKPQSGPFVYGVKT--L---SHSLHYVNIEVKVAKVVSMPDAAQVV---------AAVFY----KGR-IIYSDAN 77 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~--~---~~~I~~~~~dG~~~~i~~~~~~~~p~---------~lav~----~~~-ly~td~~ 77 (377)
.+..++++. +++||+.. . ...|.....+|..+++. ....... +.++. +++ |+++...
T Consensus 25 ~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 25 RPACVGAVG--DEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp CCEEEEEET--TEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred ccceeEEcC--CeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 556666763 58888876 2 23455553333355553 1111111 23333 677 8888777
Q ss_pred CCceEEEcCC--C-CceEEEecC-----CC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCC
Q psy5792 78 DGNIRSINLD--G-SNSTVLRNN-----AG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGI 148 (377)
Q Consensus 78 ~~~I~~~~~~--g-~~~~~~~~~-----~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~ 148 (377)
+..|+.++.+ | .....+... .. +.++. ++++.+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~-~spDg~------------------------------------- 142 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV-LLPERG------------------------------------- 142 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE-EETTTT-------------------------------------
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE-ECCCCC-------------------------------------
Confidence 7889999966 4 444444321 11 22332 234332
Q ss_pred CcEEEEEeCC---------CCeEEEEEcCC------CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC-------
Q psy5792 149 SDFILFSVNS---------GYDIMGIKYNK------NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH------- 206 (377)
Q Consensus 149 ~~~l~~s~~~---------~~~I~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~------- 206 (377)
.|+++... ...|..+++++ ... ..+. ........++++.+.+++|+++....
T Consensus 143 --~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 143 --EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp --EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred --EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 35444322 02488888887 322 1111 02233456778889889999887443
Q ss_pred CcEEEEEcCC-C---CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC--EEEEEEcCCCeEEEEeeCCCCC-
Q psy5792 207 GTISRTHRDG-T---GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN--VIEVARLTGQYRYVLISGGVDQ- 279 (377)
Q Consensus 207 ~~I~~~~~~G-~---~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~--~I~~~~~~g~~~~~l~~~~~~~- 279 (377)
..|+.+++++ . ..+.+.. ..-..+..+++.+.++ ||++....+ +|++.++++...+.+.......
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~-------~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLG-------GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE-------ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeCC-------CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 4799999984 3 3334433 1234567778876555 776654444 8999998665555554322111
Q ss_pred -------ceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEE-EEeCCCCEEEEEEeCCC---CeEE
Q psy5792 280 -------PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI-TLDRKNKRVYWCYSVGS---NVLE 348 (377)
Q Consensus 280 -------P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gl-alD~~~~~LYw~d~~~~---~~i~ 348 (377)
...+++.|.+..+|.+.. ...+|+++++++...+.+... .....++ +.| .++++++-. .. ..|+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~-~~~~~~~~s~~--~~~~~~~~~-~~~~~~~i~ 363 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP-WTEWAATLTVS--GTRAVGVAA-SPRTAYEVV 363 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS-CCEEEEEEEEE--TTEEEEEEE-ETTEEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC-CCeEEEEEecC--CCEEEEEEc-CCCCCCEEE
Confidence 357888775444444444 467899999987665554332 2334455 554 566766654 33 3788
Q ss_pred EEEccCCceEEEE
Q psy5792 349 SMDYSGGSKMQLK 361 (377)
Q Consensus 349 ~~~~~G~~~~~~~ 361 (377)
.++++++..+.+.
T Consensus 364 ~~d~~~g~~~~l~ 376 (662)
T 3azo_A 364 ELDTVTGRARTIG 376 (662)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCceEEee
Confidence 8888877666554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00018 Score=73.54 Aligned_cols=186 Identities=12% Similarity=0.123 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCC----CcEEEEEcCCC-CcEEEEeccccCCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDH----GTISRTHRDGT-GRENIIEYVETGDPTPV 234 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~----~~I~~~~~~G~-~~~~i~~~~~~~~~~~~ 234 (377)
.|..+++++... ..+... .....+..+++.+.++.|+++.... ..|+.+++++. ..+.+... . .....
T Consensus 236 ~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~--~-~~~~~ 309 (706)
T 2z3z_A 236 TVGIYHLATGKT---VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE--T-DKHYV 309 (706)
T ss_dssp EEEEEETTTTEE---EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--E-CSSCC
T ss_pred EEEEEECCCCce---EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--c-CCCeE
Confidence 366777765422 111111 1123467889988888898865432 37888888765 33444320 0 00111
Q ss_pred CCcceEEEec--cCCeEEEEcCC-CCEEEEEEcCCCeEEEEeeCCCCCcee-EEEcCCCCeEEEEecCCC---CeEEEEe
Q psy5792 235 DQFTDIAVDW--IAQNIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSA-LAVDPESGYLFWSESGKI---PLIARAG 307 (377)
Q Consensus 235 ~~p~~iavD~--~~~~lYwtd~~-~~~I~~~~~~g~~~~~l~~~~~~~P~~-iavdp~~g~lywtd~g~~---~~I~r~~ 307 (377)
....++++.+ .++.||.++.. ..+|+..+.+|...+.+... ...... ++++|.+..||++..... .+|++.+
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 1235678876 45545544432 35788888888766555432 222344 799998889999875422 4899999
Q ss_pred cCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC---CeEEEEEccCCc
Q psy5792 308 LDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS---NVLESMDYSGGS 356 (377)
Q Consensus 308 ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~---~~i~~~~~~G~~ 356 (377)
+++...+.+.. ......+++.+.+++|.++-. .. ..|+..+.+++.
T Consensus 389 ~~~~~~~~l~~--~~~~~~~~~spdg~~l~~~~~-~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGKTKDLTP--ESGMHRTQLSPDGSAIIDIFQ-SPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCCCEESCC--SSSEEEEEECTTSSEEEEEEE-CSSCSCEEEEEESSSCE
T ss_pred cCCCCceeccC--CCceEEEEECCCCCEEEEEec-CCCCCcEEEEEECCCCe
Confidence 88766555443 244677888877777877644 32 568888888765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-05 Score=70.50 Aligned_cols=226 Identities=10% Similarity=-0.016 Sum_probs=133.8
Q ss_pred EEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCC--CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 63 AAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNA--GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 63 ~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~--~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
|+++ .++++|++....+.|..++ .+|+....+.... .|.++++ +++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-s~dg---------------------------- 54 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM-APDN---------------------------- 54 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEE-CTTS----------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEE-CCCC----------------------------
Confidence 4455 5678999998889999999 6666555554332 3555554 2222
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC-----CCceEEEEEECCCCEEEEEEcC--------
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-----VSLAAKVDFHAAEDYIYWVDID-------- 205 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~d~~~~~ly~sd~~-------- 205 (377)
..++++....+.|..+++..... .....+.. ...+.++++++.++.||+++..
T Consensus 55 -----------~~~~v~~~~~~~i~~~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 120 (349)
T 1jmx_B 55 -----------RTAYVLNNHYGDIYGIDLDTCKN---TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 120 (349)
T ss_dssp -----------SEEEEEETTTTEEEEEETTTTEE---EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred -----------CEEEEEeCCCCcEEEEeCCCCcE---EEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence 24667766556799998876532 11222222 2236788999988899999854
Q ss_pred ---CCcEEEEEcCCCC---cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCC-C
Q psy5792 206 ---HGTISRTHRDGTG---RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGV-D 278 (377)
Q Consensus 206 ---~~~I~~~~~~G~~---~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~-~ 278 (377)
.+.|..+++.... ...... .-..+.++++++.+. ||+++. .|.+.++........+.... .
T Consensus 121 ~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~-l~~~~~---~i~~~d~~~~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 121 VVKPPRLEVFSTADGLEAKPVRTFP--------MPRQVYLMRAADDGS-LYVAGP---DIYKMDVKTGKYTVALPLRNWN 188 (349)
T ss_dssp EECCCEEEEEEGGGGGGBCCSEEEE--------CCSSCCCEEECTTSC-EEEESS---SEEEECTTTCCEEEEECSTTCC
T ss_pred ccCCCeEEEEECCCccccceeeecc--------CCCcccceeECCCCc-EEEccC---cEEEEeCCCCceeccccccccC
Confidence 5789999986421 112222 123588899997655 888643 38888886544332332211 0
Q ss_pred -----------------------CceeEEEcCCC---------CeEEE-EecCCCCeEEEEecCCCCeEEEEecCCCCce
Q psy5792 279 -----------------------QPSALAVDPES---------GYLFW-SESGKIPLIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 279 -----------------------~P~~iavdp~~---------g~lyw-td~g~~~~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
.|.++++.+.. ...|+ .+. ...++....++. .-..|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~ 258 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL-KTGKTHTQEFAD---------LTELYF 258 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET-TTCCEEEEEEEE---------CSSCEE
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec-cCCcEEeccccc---------CCCcce
Confidence 45566665321 23333 232 133343333211 134688
Q ss_pred EEEEeC-CCCEEEEEEeCCCCeEEEEEccCCce
Q psy5792 326 DITLDR-KNKRVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 326 glalD~-~~~~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
++++++ .++.||.+ . +.|..+++..+..
T Consensus 259 ~~~~sp~dg~~l~~~-~---~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 259 TGLRSPKDPNQIYGV-L---NRLAKYDLKQRKL 287 (349)
T ss_dssp EEEECSSCTTEEEEE-E---SEEEEEETTTTEE
T ss_pred eeEecCCCCCEEEEE-c---CeEEEEECccCeE
Confidence 999988 78888888 4 4788888775443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00019 Score=67.36 Aligned_cols=303 Identities=9% Similarity=0.040 Sum_probs=160.1
Q ss_pred CCccccccCCCCeEEEEeCC--CCcEEEEEcCCc-EEEEEeCCCCCceE-EEEE--ECCeEEEEcCCCCceEEEcC-CCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTL--SHSLHYVNIEVK-VAKVVSMPDAAQVV-AAVF--YKGRIIYSDANDGNIRSINL-DGS 89 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG~-~~~i~~~~~~~~p~-~lav--~~~~ly~td~~~~~I~~~~~-~g~ 89 (377)
++..+++.+++++|+++... ...|...++++. .+.+. ....... ++++ .+.+|+++... +.|+.++. .|+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT--EGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC--CSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee--cCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCC
Confidence 36778899999998777543 457999999988 66664 2222222 2444 45677666543 36888884 444
Q ss_pred ceEEEecCCC--ceeEEeeecCCC-CcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe----CCCCeE
Q psy5792 90 NSTVLRNNAG--ISDFILFSVNSG-YDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV----NSGYDI 162 (377)
Q Consensus 90 ~~~~~~~~~~--p~~i~v~~~~~~-~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~----~~~~~I 162 (377)
...+...... |.|-.+...... ....... .+..+|.+ ..+++.. .....|
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~----------~~~~spdg-------------~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEIL----------KRDWQPLT-------------SWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEE----------GGGCCCCC-------------SHHHHHHHHHTCCCEEE
T ss_pred cEEEEecccccCCCCCEEEeccCCcccccccc----------ccccCCCC-------------cceeeeeeccCCCcceE
Confidence 4444332222 332222111000 0000000 00000000 0011110 111126
Q ss_pred EEEEcCCCCceeeEEEEecCCCCceEEEEEEC-CCCEEEEEEcCC-----CcEEEEEcCCCCcEEEEeccccCCCCC-CC
Q psy5792 163 MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA-AEDYIYWVDIDH-----GTISRTHRDGTGRENIIEYVETGDPTP-VD 235 (377)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~-~~~~ly~sd~~~-----~~I~~~~~~G~~~~~i~~~~~~~~~~~-~~ 235 (377)
..+++.+... ..+. ........+++.+ .+++|+++.... .+|+.+++++...+.+.. .. ..
T Consensus 171 ~~~d~~~g~~---~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-------~~~~~ 238 (396)
T 3c5m_A 171 IKVDIETGEL---EVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-------HAEGE 238 (396)
T ss_dssp EEEETTTCCE---EEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-------CCTTE
T ss_pred EEEECCCCcE---Eeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-------cCCCc
Confidence 6666655433 1121 1223456777777 466677765332 479999998765444432 11 12
Q ss_pred CcceEEEeccCCeEEEEcC--CC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcC-CCCeEEEEec-------------
Q psy5792 236 QFTDIAVDWIAQNIYWSDP--KE--NVIEVARLTGQYRYVLISGGVDQPSALAVDP-ESGYLFWSES------------- 297 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~--~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp-~~g~lywtd~------------- 297 (377)
.+..+++.+.++.|+++.. .. +.|.+.++++...+.+.... ... ++..| ....++.+..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------C
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 3666788877777777632 23 34999999876555444321 112 67777 5555554321
Q ss_pred -CCCCeEEEEecCCCCeEEEEecCCC----------CceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEE
Q psy5792 298 -GKIPLIARAGLDGKKQTILAQEIIM----------PIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 298 -g~~~~I~r~~ldG~~~~~l~~~~~~----------~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~ 360 (377)
.....|+..++++...+.+...... .+..+++.+.+++|+++... ....|+.++++++..+.+
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp CCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred cCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 0146899999987665555543211 14456777778899988751 345789999997755544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0015 Score=59.56 Aligned_cols=279 Identities=11% Similarity=0.047 Sum_probs=165.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.++++.+.++.|. +-+..+.|..-|+... .+.+. ........+++ .++.+..+-..++.|...+ .+|+..
T Consensus 14 ~~V~~~~fsp~~~~l~-s~~~dg~v~lWd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVL-TTLYSGRVELWNYETQVEVRSIQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp SCEEEEEECSSSSEEE-EEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred CceEEEEECCCCCEEE-EEcCCCcEEEEECCCCceeEEee--ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 3578899998876664 4456788999998766 55553 33444566777 3444555555677888888 667766
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+++ +++.. ++++....+.|+..++...
T Consensus 91 ~~~~~h~~~v~~~~~-~~~~~----------------------------------------~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAV-HPTKP----------------------------------------YVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp EEEECCSSCEEEEEE-CSSSS----------------------------------------EEEEEETTSCEEEEEGGGT
T ss_pred EEEeCCCCcEEEEEE-cCCCC----------------------------------------EEEEECCCCeEEEEECCCC
Confidence 66654333 455553 33322 3344444446888887654
Q ss_pred CceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEecc-CC
Q psy5792 171 ESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDWI-AQ 247 (377)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~-~~ 247 (377)
.. ....+. ....+..+++++.++.++.+-...+.|...++..... ..+.. ........+++.+. .+
T Consensus 130 ~~----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 130 WA----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-------GQERGVNYVDYYPLPDK 198 (304)
T ss_dssp TE----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC-------CCTTCEEEEEECCSTTC
T ss_pred cc----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc-------CCcCcEEEEEEEEcCCC
Confidence 22 111122 2345788999986666666666778888888864332 23322 12233455666543 34
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gl 327 (377)
.+..+-...++|.+-++....+...+.........++++|....|.-+.. ...|..-++........+.........+
T Consensus 199 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE--DGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC--CCeEEEEECCCCceeeeccCCCccEEEE
Confidence 56667667789999999876655445555666789999996555554442 4667766765443333233224456677
Q ss_pred EEeCCCCEEEEEEeCCCCeEEEEEc
Q psy5792 328 TLDRKNKRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 328 alD~~~~~LYw~d~~~~~~i~~~~~ 352 (377)
++.+.++..|.+-. ..+.+..+++
T Consensus 277 ~~~~~~~~~~~asg-~~~g~~~~~~ 300 (304)
T 2ynn_A 277 ATHPTGRKNYIASG-FDNGFTVLSL 300 (304)
T ss_dssp EECTTCGGGCEEEE-ETTEEEEEEC
T ss_pred EECCCCCceEEEEe-cCCceEEEEe
Confidence 77665555544444 4444444443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-06 Score=80.38 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=104.1
Q ss_pred CCCCceEEEEEECCCC-EEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCCC-----CCCCcceEEEecc---CCeEEE
Q psy5792 182 SKVSLAAKVDFHAAED-YIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDPT-----PVDQFTDIAVDWI---AQNIYW 251 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~-~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~~-----~~~~p~~iavD~~---~~~lYw 251 (377)
+++..|.+|++.+.+. +||+++. .++|++++.+|.. .+.+.... ..... ....+-+||+++. ++.||+
T Consensus 11 ~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~-~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 11 SGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIH-KLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp EEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECT-TTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred cCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCc-ceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 4678899999998663 7999985 5899999877642 12222100 00001 1345789999974 678988
Q ss_pred EcCC------------CCEEEEEEcCCC--------eEEEEee----CCCCCceeEEEcCCCCeEEEEe--cC-------
Q psy5792 252 SDPK------------ENVIEVARLTGQ--------YRYVLIS----GGVDQPSALAVDPESGYLFWSE--SG------- 298 (377)
Q Consensus 252 td~~------------~~~I~~~~~~g~--------~~~~l~~----~~~~~P~~iavdp~~g~lywtd--~g------- 298 (377)
+... ..+|.++.++.. ..++|+. ........|+++| .|+||++- .+
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~ 167 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDME 167 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHH
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccc
Confidence 7532 137888888531 2344443 2234567899998 78999984 11
Q ss_pred -------CCCeEEEEecCCCC-------------------eEEEEecCCCCceEEEEeCCCC------EEEEEEe
Q psy5792 299 -------KIPLIARAGLDGKK-------------------QTILAQEIIMPIKDITLDRKNK------RVYWCYS 341 (377)
Q Consensus 299 -------~~~~I~r~~ldG~~-------------------~~~l~~~~~~~P~glalD~~~~------~LYw~d~ 341 (377)
...+|.|++.||+. +..+....+.+|.||++|+.++ ++|.+|.
T Consensus 168 ~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 168 EMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp HCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred cccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence 03689999999941 2245555699999999998754 6777775
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00035 Score=71.80 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=103.1
Q ss_pred CceEEEEEECCCCEEEEEEc----CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDI----DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NV 258 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~----~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~ 258 (377)
..+..+++ +.++.|+++.. ....|+.+++++...+.+..... ...+.....+++.+.++ ++++.... .+
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~spdg~-~~~~~~~~g~~~ 361 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS---PTWVPLHNSLRFLDDGS-ILWSSERTGFQH 361 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC---SSCCCCCSCCEECTTSC-EEEEECTTSSCE
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC---CCcCCcCCceEECCCCe-EEEEecCCCccE
Confidence 34677888 87888988754 23478888887655554443100 00111235778887555 66664443 47
Q ss_pred EEEEEcCCCeEEEEeeCCCCCceeE-EEcCCCCeEEEEecCC---CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 259 IEVARLTGQYRYVLISGGVDQPSAL-AVDPESGYLFWSESGK---IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~~~~~~P~~i-avdp~~g~lywtd~g~---~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
|+..+++|. .+.+... ......+ +++|.+..||++-... ..+|++++++|...+.|.. ......+++.+.++
T Consensus 362 l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 362 LYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGMHSASFARNAS 437 (741)
T ss_dssp EEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSS
T ss_pred EEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCC
Confidence 888888887 5444432 3344566 5999888898876432 4579999998876666544 23445788888888
Q ss_pred EEEEEEeCCC---CeEEEEEccCCce
Q psy5792 335 RVYWCYSVGS---NVLESMDYSGGSK 357 (377)
Q Consensus 335 ~LYw~d~~~~---~~i~~~~~~G~~~ 357 (377)
+|.++-. .. ..++.++.+|+..
T Consensus 438 ~l~~~~~-~~~~p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 438 VYVDSWS-NNSTPPQIELFRANGEKI 462 (741)
T ss_dssp EEEEEEE-ETTEEEEEEEEETTSCEE
T ss_pred EEEEEec-CCCCCCeEEEEEcCCCeE
Confidence 8877654 32 3577777776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0024 Score=60.44 Aligned_cols=276 Identities=9% Similarity=-0.016 Sum_probs=166.6
Q ss_pred ccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC
Q psy5792 23 KPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG 99 (377)
Q Consensus 23 ~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~ 99 (377)
++.....++ +-+..+.|...+++.. ...+...........+++ .++.+.++-..++.|...+ .+++....+.....
T Consensus 99 ~~~s~~~l~-~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 99 LDWSNLNVV-AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp EEECTTSEE-EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EeecCCCEE-EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence 444444443 4445778999998776 444432234556788888 2333344434567888888 56665555543222
Q ss_pred -ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 100 -ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 100 -p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
+..+.. ++ . ++++....+.|+..++..... ...
T Consensus 178 ~v~~~~~-~~-----------------------------------------~-~l~~~~~dg~i~i~d~~~~~~---~~~ 211 (401)
T 4aez_A 178 RVGCLSW-NR-----------------------------------------H-VLSSGSRSGAIHHHDVRIANH---QIG 211 (401)
T ss_dssp CEEEEEE-ET-----------------------------------------T-EEEEEETTSEEEEEETTSSSC---EEE
T ss_pred ceEEEEE-CC-----------------------------------------C-EEEEEcCCCCEEEEecccCcc---eee
Confidence 333333 11 1 333333345688888874332 111
Q ss_pred EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC--CC
Q psy5792 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP--KE 256 (377)
Q Consensus 179 ~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~--~~ 256 (377)
........+.++++.+.+..|+... ..+.|...++.......... .....+.++++.+.+.+++.+-. ..
T Consensus 212 ~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~ll~~~~gs~d 283 (401)
T 4aez_A 212 TLQGHSSEVCGLAWRSDGLQLASGG-NDNVVQIWDARSSIPKFTKT-------NHNAAVKAVAWCPWQSNLLATGGGTMD 283 (401)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCSSEEEEEC-------CCSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEccCCCCCccEEec-------CCcceEEEEEECCCCCCEEEEecCCCC
Confidence 1122345688999998665655554 56889989987544333333 33445889999987888888865 57
Q ss_pred CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE--EecCCCCceEEEEeCCCC
Q psy5792 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL--AQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l--~~~~~~~P~glalD~~~~ 334 (377)
+.|...++........+.. .....++++.|....|+.+.....+.|...++........ ....-.....+++.+.+.
T Consensus 284 ~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (401)
T 4aez_A 284 KQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR 362 (401)
T ss_dssp CEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS
T ss_pred CEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCC
Confidence 8999999976554444443 4568999999977777776422356777777765433322 222235677899986555
Q ss_pred EEEEEEeCCCCeEEEEEccCCc
Q psy5792 335 RVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.|+. -. ..+.|...++..+.
T Consensus 363 ~l~s-~~-~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 363 ILST-AA-SDENLKFWRVYDGD 382 (401)
T ss_dssp EEEE-EC-TTSEEEEEECCC--
T ss_pred EEEE-Ee-CCCcEEEEECCCCc
Confidence 5554 44 57888888887543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=73.78 Aligned_cols=167 Identities=11% Similarity=0.138 Sum_probs=105.4
Q ss_pred eEEEEEECCCCEEEEEEc--------------------------------CCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 187 AAKVDFHAAEDYIYWVDI--------------------------------DHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~--------------------------------~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
+.++++.+.+.+|+++.. ....|+.+++++.....+... ...-
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~ 257 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG-----EPKE 257 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC-----SCTT
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC-----CCCc
Confidence 468888888888888752 224688888875443332210 0011
Q ss_pred CCcceEEEeccCCeEEEEcCCC----CEEEEEEcCCC-eEEEEeeC-C---CCCceeEEEcC--CCCeEEEEecCCCCeE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKE----NVIEVARLTGQ-YRYVLISG-G---VDQPSALAVDP--ESGYLFWSESGKIPLI 303 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~----~~I~~~~~~g~-~~~~l~~~-~---~~~P~~iavdp--~~g~lywtd~g~~~~I 303 (377)
..+..+++.+.++.|+++.... .+|.+.++++. ..+.+... . .....++++.| ...+||.++.....+|
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 2366788887777788854322 37888998876 55555432 1 11236788988 6666666654335789
Q ss_pred EEEecCCCCeEEEEecCCCCceE-EEEeCCCCEEEEEEeCCCC----eEEEEEccCCceEEE
Q psy5792 304 ARAGLDGKKQTILAQEIIMPIKD-ITLDRKNKRVYWCYSVGSN----VLESMDYSGGSKMQL 360 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~~~~~P~g-lalD~~~~~LYw~d~~~~~----~i~~~~~~G~~~~~~ 360 (377)
+..+.+|...+.+.... ..... +++++.+++||++.. ..+ .|+.++.+++..+.+
T Consensus 338 ~~~~~~~~~~~~l~~~~-~~v~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGE-WEVTNFAGFDPKGTRLYFEST-EASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EEEETTSCEEEECCCSS-SCEEEEEEECTTSSEEEEEES-SSCTTCBEEEEEETTCCCCEES
T ss_pred EEEECCCCEEEecCCCC-eEEEeeeEEcCCCCEEEEEec-CCCCceEEEEEEEcCCCCceec
Confidence 99988877665554321 22334 789888889999877 544 899999887654433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0021 Score=59.12 Aligned_cols=283 Identities=7% Similarity=0.034 Sum_probs=165.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
..+.++++.+.+..|+.. ...+.|...++... ..++. .......++++. ++..+++-..++.|...+ .+++..
T Consensus 33 ~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSC-SKDSSASVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp SCEEEEEECTTSCEEEEE-ESSSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred ceEEEEEEcCCCCEEEEE-eCCCEEEEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 367888998876666544 45678999997665 55442 455567888883 344445545577888888 666666
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC----CCeEEEEEc
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS----GYDIMGIKY 167 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~----~~~I~~~~l 167 (377)
..+.....+..+.+ +++.. +++.+..+ .+.|...++
T Consensus 110 ~~~~~~~~v~~~~~-~~~~~---------------------------------------~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 110 ATWKSPVPVKRVEF-SPCGN---------------------------------------YFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEEECSSCEEEEEE-CTTSS---------------------------------------EEEEEECCBTTBCCEEEEEEE
T ss_pred EEeecCCCeEEEEE-ccCCC---------------------------------------EEEEecCCccCCCCEEEEEEe
Confidence 55553222445443 22221 23333322 123665555
Q ss_pred CCCCce--e-------eEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEeccccCCCCCCCCc
Q psy5792 168 NKNESK--V-------TQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 168 ~~~~~~--~-------~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~~~~~~~~~p 237 (377)
...... . ...+........+..+++++.+..|+... ..+.|...++... ....... .....+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-------~~~~~v 221 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSID-------LHEKSI 221 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEE-------CCSSCE
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEe-------cCCCce
Confidence 432210 0 01111112223688899998777776665 5688999998752 2222232 234458
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC------------eEEE
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP------------LIAR 305 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~------------~I~r 305 (377)
.++++.+.+..| ++-...+.|.+.++........+. .......++++|...+++.+...... .|..
T Consensus 222 ~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 222 SDMQFSPDLTYF-ITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred eEEEECCCCCEE-EEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 889998754444 555566799999998765444444 34567899999988888887642111 4555
Q ss_pred EecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 306 AGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 306 ~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.++........+.........+++.+.+..|. +-. ..+.|...+++
T Consensus 300 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~-~dg~v~iw~~~ 345 (369)
T 3zwl_B 300 YHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA-SGG-EDGFIRLHHFE 345 (369)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEE-TTSEEEEEEEC
T ss_pred EecCCCcchhheecccCcEEEEEECCCCCEEE-EEc-CCCeEEEEECc
Confidence 55544443333333345677888876555444 444 46677666665
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00026 Score=66.90 Aligned_cols=290 Identities=11% Similarity=0.028 Sum_probs=167.4
Q ss_pred CcCCccccccCCCCeEEEEe----------CCCCcEEEEEcCCc-E-EEEEeCCCCCceEEEEE-ECCeEEEEcCCCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGVK----------TLSHSLHYVNIEVK-V-AKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNI 81 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d----------~~~~~I~~~~~dG~-~-~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I 81 (377)
+..+..++..+.++.+..+- +..+.|...+++.. . +.+...........+++ .++.++++-..++.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 34677888888876565565 55678888888765 2 22211133445678888 344444444456778
Q ss_pred EEEcCCC----C-ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 82 RSINLDG----S-NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 82 ~~~~~~g----~-~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
...+... . ....+..... +..+.+ +++. ..++++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~---------------------------------------~~~l~s 131 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKF-NAKQ---------------------------------------DNVLAS 131 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEE-CSSS---------------------------------------TTBEEE
T ss_pred EEeecccccccccchhhccCCccceEEEEE-cCCC---------------------------------------CCEEEE
Confidence 8887322 2 2222222222 333332 2210 123444
Q ss_pred eCCCCeEEEEEcCCCC------ceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 156 VNSGYDIMGIKYNKNE------SKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~------~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
....+.|+..++.... . ...+.. ......+.++++.+.++.++++-...+.|...++..........
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---- 205 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYT--PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS---- 205 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCC--CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC----
T ss_pred EcCCCeEEEEECCCCcccccccc--ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe----
Confidence 4444458777776553 1 000000 11234577899998756667776678899999987543333332
Q ss_pred CCCCC------CCCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCC-eEEEEee-CCCCCceeEEEcCCCCeEEEEec
Q psy5792 229 GDPTP------VDQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQ-YRYVLIS-GGVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 229 ~~~~~------~~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~-~~~~l~~-~~~~~P~~iavdp~~g~lywtd~ 297 (377)
.. -..+.++++.+.+.+++++-...+ .|.+.++... .....+. .....+.++++.|..+.++.+-.
T Consensus 206 ---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 282 (416)
T 2pm9_A 206 ---YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282 (416)
T ss_dssp ---CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE
T ss_pred ---ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe
Confidence 11 345888999986666666655555 8999998763 2222222 33456789999984444444433
Q ss_pred CCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 298 GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 298 g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
....|...++........+...-.....+++.+.+.+++.+-. ..+.|...++...
T Consensus 283 -~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 283 -RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS-FDNKIEVQTLQNL 338 (416)
T ss_dssp -SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC-SSSEEEEEESCCC
T ss_pred -CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe-cCCcEEEEEccCC
Confidence 2467888887654433333332355678999876545666666 6788888887644
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00018 Score=73.07 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=119.9
Q ss_pred EEEEeCCCCeEEEEEcC--C-CCceeeEEEEecC---CCCceEEEEEECCCCEEEEEEcCC---------CcEEEEEcCC
Q psy5792 152 ILFSVNSGYDIMGIKYN--K-NESKVTQVLGPLS---KVSLAAKVDFHAAEDYIYWVDIDH---------GTISRTHRDG 216 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~--~-~~~~~~~~~~~~~---~~~~~~~l~~d~~~~~ly~sd~~~---------~~I~~~~~~G 216 (377)
|+++......|..++++ + ... ..+.... ......++++.+.++.|+++.... ..|+++++++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEECCCCeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 66776544458888887 3 332 2222111 234577899999899999876431 4899999987
Q ss_pred ------CCcEEEE-eccccCCCCCCCCcceEEEeccCCeEEEEcCC-------CCEEEEEEcCC-C---eEEEEeeCCCC
Q psy5792 217 ------TGRENII-EYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK-------ENVIEVARLTG-Q---YRYVLISGGVD 278 (377)
Q Consensus 217 ------~~~~~i~-~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~-------~~~I~~~~~~g-~---~~~~l~~~~~~ 278 (377)
...+.+. . .-....++++.+.++.|+|+... ...|++.++++ . ..+.+......
T Consensus 171 ~~~~~~~~~~~l~~~--------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 171 SAAADRSAVRELSDD--------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp TTTTCGGGSEESSCS--------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred CccccCCceeEEEec--------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 4444443 2 22346678888888889887543 25899999984 3 44445443345
Q ss_pred CceeEEEcCCCCeEEEEe-cCCCCeEEEEecCCCCeEEEEecC--CCC------ceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 279 QPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQTILAQEI--IMP------IKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 279 ~P~~iavdp~~g~lywtd-~g~~~~I~r~~ldG~~~~~l~~~~--~~~------P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
.+..++..|... +|++. .....+|++.++++...+.+.... ... ...+++.. +++++++......+|+.
T Consensus 243 ~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 320 (662)
T 3azo_A 243 AIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGI 320 (662)
T ss_dssp CEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEE
T ss_pred eEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEcCccEEEE
Confidence 678899998655 55554 322348999998666555544321 111 23456643 45555554414456777
Q ss_pred EEccCCceEEE
Q psy5792 350 MDYSGGSKMQL 360 (377)
Q Consensus 350 ~~~~G~~~~~~ 360 (377)
++.+++..+++
T Consensus 321 ~d~~~~~~~~l 331 (662)
T 3azo_A 321 LDPESGELVDA 331 (662)
T ss_dssp EETTTTEEEEC
T ss_pred EECCCCcEEEe
Confidence 78876654443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-05 Score=69.13 Aligned_cols=275 Identities=13% Similarity=0.139 Sum_probs=152.5
Q ss_pred cccCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC
Q psy5792 9 YTRNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL 86 (377)
Q Consensus 9 ~~~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~ 86 (377)
|+.........+.++|.. ++||+. +..+.|..+|.+|+ ..... .......++++ .++.||++... |.+++.
T Consensus 13 W~~~~~~~~~~~~~~d~~-g~l~v~-t~~~~l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~g~l~v~t~~---l~~~d~ 85 (330)
T 3hxj_A 13 WEFLIGNSIDSSPILAKN-GTIYLG-SSNKNLYAINTDGSVKWFFK--SGEIIECRPSIGKDGTIYFGSDK---VYAINP 85 (330)
T ss_dssp CTTTSCEEECCCCEECTT-SCEECS-STTTTTEEECTTSCEEESSC--GGGEEEECCEETTTTEECCSSCE---EEEECC
T ss_pred EEEeCCCCcccCceEccC-CeEEEE-cCCCEEEEECCCCcEEEEEe--cCCCcccceEEecCCcEEEecCc---EEEECC
Confidence 333333333456667653 466544 45667899996666 33221 11122345666 47788887543 888876
Q ss_pred CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 87 ~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+|+.......... .....+. +..++++... +.|..+
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~v~t~~-~~l~~~ 122 (330)
T 3hxj_A 86 DGTEKWRFDTKKAIVSDFTIF------------------------------------------EDILYVTSMD-GHLYAI 122 (330)
T ss_dssp CGGGGGGSCC-----CCEEEE------------------------------------------TTEEEEECTT-SEEEEE
T ss_pred CCcEEEEEECCCCcccCceEE------------------------------------------CCEEEEEecC-CEEEEE
Confidence 6644211110000 0001110 1234444422 237777
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
+.++. . ....... ......+..+. ++.||+.. ..+.|++++.+|....... ........+++|.
T Consensus 123 d~~g~-~---~~~~~~~-~~~~~~~~~~~-~g~l~vgt-~~~~l~~~d~~g~~~~~~~--------~~~~~~~~~~~d~- 186 (330)
T 3hxj_A 123 NTDGT-E---KWRFKTK-KAIYATPIVSE-DGTIYVGS-NDNYLYAINPDGTEKWRFK--------TNDAITSAASIGK- 186 (330)
T ss_dssp CTTSC-E---EEEEECS-SCCCSCCEECT-TSCEEEEC-TTSEEEEECTTSCEEEEEE--------CSSCCCSCCEECT-
T ss_pred cCCCC-E---EEEEcCC-CceeeeeEEcC-CCEEEEEc-CCCEEEEECCCCCEeEEEe--------cCCCceeeeEEcC-
Confidence 76632 1 1111111 11223334454 56777765 4578999988843322222 1233466778884
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCce
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
.++||++. +.|.+.+.+|........ ....+.++++|+ +|.||++.. ...|.+.+.+|......... -..+.
T Consensus 187 ~g~l~v~t---~~l~~~d~~g~~~~~~~~-~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~g~~~~~~~~~-~~~~~ 258 (330)
T 3hxj_A 187 DGTIYFGS---DKVYAINPDGTEKWNFYA-GYWTVTRPAISE-DGTIYVTSL--DGHLYAINPDGTEKWRFKTG-KRIES 258 (330)
T ss_dssp TCCEEEES---SSEEEECTTSCEEEEECC-SSCCCSCCEECT-TSCEEEEET--TTEEEEECTTSCEEEEEECS-SCCCS
T ss_pred CCEEEEEe---CEEEEECCCCcEEEEEcc-CCcceeceEECC-CCeEEEEcC--CCeEEEECCCCCEeEEeeCC-CCccc
Confidence 68898887 678998877765433322 235578899996 689999875 36888887766655444332 23345
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
.+++| .+++||++.. .+.|.+++.+|......
T Consensus 259 ~~~~~-~~g~l~v~t~--~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 259 SPVIG-NTDTIYFGSY--DGHLYAINPDGTEKWNF 290 (330)
T ss_dssp CCEEC-TTSCEEEECT--TCEEEEECTTSCEEEEE
T ss_pred cceEc-CCCeEEEecC--CCCEEEECCCCcEEEEE
Confidence 67776 4678887764 46899998875544443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0023 Score=58.05 Aligned_cols=270 Identities=9% Similarity=0.017 Sum_probs=159.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-----EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-----VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDG 88 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-----~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g 88 (377)
+.+.+++..+.+..|+... .+.|...+++.. ...+...........+++. ++...++-..++.|...+ .++
T Consensus 52 ~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 4677888888777775554 788888888654 1222111334456778883 333444434567788887 444
Q ss_pred Cc--eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 89 SN--STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 89 ~~--~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+. ...+..... +..+.+ +++. ..++.+. ..+.|+..
T Consensus 130 ~~~~~~~~~~~~~~i~~~~~-~~~~---------------------------------------~~l~~~~-~dg~v~~~ 168 (337)
T 1gxr_A 130 TPRIKAELTSSAPACYALAI-SPDS---------------------------------------KVCFSCC-SDGNIAVW 168 (337)
T ss_dssp --EEEEEEECSSSCEEEEEE-CTTS---------------------------------------SEEEEEE-TTSCEEEE
T ss_pred CcceeeecccCCCceEEEEE-CCCC---------------------------------------CEEEEEe-CCCcEEEE
Confidence 32 222222212 333332 2211 1344433 33458888
Q ss_pred EcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec
Q psy5792 166 KYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
++..... +..+. ....+..+++++.+..|+.+. ..+.|...++.......... .-..+..+++.+
T Consensus 169 d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 169 DLHNQTL-----VRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHD--------FTSQIFSLGYCP 234 (337)
T ss_dssp ETTTTEE-----EEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECT
T ss_pred eCCCCce-----eeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCceEeeec--------CCCceEEEEECC
Confidence 8876522 22222 345688999998666666655 57889999987543322222 234578899987
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCc
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPI 324 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P 324 (377)
.+..|+.. ...+.|.+.++.......+.. ....+.+++++|...+|+.+.. ...|...++........... -..+
T Consensus 235 ~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~~~~~~~~~~~~~~-~~~v 309 (337)
T 1gxr_A 235 TGEWLAVG-MESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGK--DNLLNAWRTPYGASIFQSKE-SSSV 309 (337)
T ss_dssp TSSEEEEE-ETTSCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEEC-SSCE
T ss_pred CCCEEEEE-cCCCcEEEEECCCCCeEEEcC-CccceeEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEecC-CCcE
Confidence 65555544 445789999998876544433 3556899999997666666553 47888888776554433332 3567
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
..+++.+.+..|+.+.. .+.|..
T Consensus 310 ~~~~~s~~~~~l~~~~~--dg~i~i 332 (337)
T 1gxr_A 310 LSCDISVDDKYIVTGSG--DKKATV 332 (337)
T ss_dssp EEEEECTTSCEEEEEET--TSCEEE
T ss_pred EEEEECCCCCEEEEecC--CCeEEE
Confidence 88888876666655543 444443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0028 Score=58.09 Aligned_cols=291 Identities=10% Similarity=0.040 Sum_probs=157.2
Q ss_pred cCCccccccCCCCeEEEEeCC---CCcEEEEEcCCc-EEEEEeCCCCCceEEEEEEC----CeEEEEcCCCCceEEEc-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL---SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYK----GRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~---~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~----~~ly~td~~~~~I~~~~-~ 86 (377)
..+.+++..+.++++..+-+. .+.|...++++. ...+...........+++.. +.++++-..++.|...+ .
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 467888999888788766655 788999999877 44332113344567777733 35555555677888888 5
Q ss_pred CCC-ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 87 DGS-NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 87 ~g~-~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
+++ ....+..... +..+... +.. | ..++.-++++....+.|+.
T Consensus 99 ~~~~~~~~~~~~~~~v~~~~~~-~~~-------------------~---------------~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 99 APEMPVYSVKGHKEIINAIDGI-GGL-------------------G---------------IGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp SCSSCSEEECCCSSCEEEEEEE-SGG-------------------G---------------CC-CCCEEEEEETTSCEEE
T ss_pred CCCccEEEEEecccceEEEeec-ccc-------------------c---------------cCCCccEEEEEeCCCeEEE
Confidence 555 4444443222 3444321 000 0 0011113333333345888
Q ss_pred EEcCCCCceeeEEEEecCC--CCceEEEE----EECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 165 IKYNKNESKVTQVLGPLSK--VSLAAKVD----FHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~--~~~~~~l~----~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.++...... ...+.+..+ ......++ +.+.+..|+ +-...+.|...++.......... .-..+.
T Consensus 144 wd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~--------~~~~v~ 213 (357)
T 3i2n_A 144 WDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVC-AGYDNGDIKLFDLRNMALRWETN--------IKNGVC 213 (357)
T ss_dssp ECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEE-EEETTSEEEEEETTTTEEEEEEE--------CSSCEE
T ss_pred EeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEE-EEccCCeEEEEECccCceeeecC--------CCCceE
Confidence 887655310 112211111 22456666 344444444 44466889989987544322222 234588
Q ss_pred eEEEecc--CCeEEEEcCCCCEEEEEEcCCCeEE-E----EeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 239 DIAVDWI--AQNIYWSDPKENVIEVARLTGQYRY-V----LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 239 ~iavD~~--~~~lYwtd~~~~~I~~~~~~g~~~~-~----l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
.+++.+. .+..+++-...+.|.+.++...... . ...........+++.|....++++-.. ...|...++...
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 292 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYP 292 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECC
T ss_pred EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCC
Confidence 8899873 3445555556678888887643211 1 112345567899999865535555432 355555544321
Q ss_pred C-e----------------EEE--EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 312 K-Q----------------TIL--AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 312 ~-~----------------~~l--~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
. . +.+ ....-.....+++.+.+..|.++-. ..+.|...++.
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~-~d~~i~iw~~~ 352 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS-FDQTVRVLIVT 352 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE-TTSEEEEEEEC
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec-CCCcEEEEECC
Confidence 1 1 111 1111345677888776666665666 66677666654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00065 Score=63.63 Aligned_cols=199 Identities=7% Similarity=0.000 Sum_probs=115.1
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCc-eEEEEEECCCCEEEEEE---------------------cCCCc
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSL-AAKVDFHAAEDYIYWVD---------------------IDHGT 208 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~d~~~~~ly~sd---------------------~~~~~ 208 (377)
.|+++..+ ..|+.+++++... ..+........ .....+++.+..+.... .....
T Consensus 94 ~l~~~~~~-~~l~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 94 ALFYVKDG-RNLMRVDLATLEE---NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEEEEETT-TEEEEEETTTCCE---EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred EEEEEeCC-CeEEEEECCCCcc---eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 46666643 2488888887644 22332222111 12223355455554322 12257
Q ss_pred EEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec-cCCeEEEEcCC-----CCEEEEEEcCCCeEEEEeeCCC-CCce
Q psy5792 209 ISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW-IAQNIYWSDPK-----ENVIEVARLTGQYRYVLISGGV-DQPS 281 (377)
Q Consensus 209 I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~-~~~~lYwtd~~-----~~~I~~~~~~g~~~~~l~~~~~-~~P~ 281 (377)
|+.+++.+...+.+.. .-.....+++.+ .++.|.++... ..+|+..++++...+.+..... ....
T Consensus 170 l~~~d~~~g~~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT 241 (388)
T ss_dssp EEEEETTTCCEEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred EEEEECCCCceEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence 8888888666555554 233467888888 67777665433 4589999999877666554321 1345
Q ss_pred eEEEcCCCCeEEEE-ecCCCC--eEEEEecCCCCeEEEEecCC-----CCceEEEEeCCCCEEEEEE--------eCCCC
Q psy5792 282 ALAVDPESGYLFWS-ESGKIP--LIARAGLDGKKQTILAQEII-----MPIKDITLDRKNKRVYWCY--------SVGSN 345 (377)
Q Consensus 282 ~iavdp~~g~lywt-d~g~~~--~I~r~~ldG~~~~~l~~~~~-----~~P~glalD~~~~~LYw~d--------~~~~~ 345 (377)
..+..|....|+++ +..... .|+..++++...+.+....- ..|.++++.+.+++|+++- . ...
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~-~~~ 320 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE-NDP 320 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C-CCC
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC-CCC
Confidence 67899987778554 432233 49999998777666544211 1144455655566677653 4 566
Q ss_pred eEEEEEccCCceEEEEe
Q psy5792 346 VLESMDYSGGSKMQLKL 362 (377)
Q Consensus 346 ~i~~~~~~G~~~~~~~~ 362 (377)
.|+.++++++..+.+..
T Consensus 321 ~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEeccCCceEEecc
Confidence 88899988776655543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0015 Score=70.17 Aligned_cols=155 Identities=15% Similarity=0.154 Sum_probs=105.5
Q ss_pred ceEEEEEE-CCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC-CcceEEEeccCCeEEEEcCCCCEEE-EE
Q psy5792 186 LAAKVDFH-AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD-QFTDIAVDWIAQNIYWSDPKENVIE-VA 262 (377)
Q Consensus 186 ~~~~l~~d-~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~-~p~~iavD~~~~~lYwtd~~~~~I~-~~ 262 (377)
.+..+++. +.+..|.++. .+.|+.++.++.....+. .... .+..+++. .++.|+++.. ..+|+ +.
T Consensus 297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~ 364 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVP--------EPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIY 364 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECS--------CCSCEEEEEECSS-SEEEEEEEET-TEEEEEEE
T ss_pred ccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEcc--------CCCcceEEeeeEc-CCCeEEEEEC-CCceEEEE
Confidence 36678888 8777777776 568888887754433222 1222 34445554 3455666554 56888 89
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
++++...+.+. .....+..+++.|...+|+++.. ...|+..++.+...+.+..........+++.+.+++|.++..
T Consensus 365 d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~--~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~- 440 (1045)
T 1k32_A 365 DYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP- 440 (1045)
T ss_dssp ETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE-
T ss_pred ECCCCCceEec-CCccceeeeEECCCCCEEEEECC--CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEec-
Confidence 99887665555 44567899999998888888764 468999999876666665443344577899888888888765
Q ss_pred CC---------CeEEEEEccCCc
Q psy5792 343 GS---------NVLESMDYSGGS 356 (377)
Q Consensus 343 ~~---------~~i~~~~~~G~~ 356 (377)
.. ..|...+.+++.
T Consensus 441 ~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 441 LKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp ECSSTTCSCCEEEEEEEETTTTE
T ss_pred CccccccCCCCCeEEEEECCCCc
Confidence 33 478888888654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0011 Score=63.69 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=148.9
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCC-----------c-EEEEEeCCCCCceEEEEEE-CCe-EEEEcCCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV-----------K-VAKVVSMPDAAQVVAAVFY-KGR-IIYSDANDGNI 81 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG-----------~-~~~i~~~~~~~~p~~lav~-~~~-ly~td~~~~~I 81 (377)
+.+..++..+.++.++.+-+..+.|...++.. . ..++. .....+.+|++. .+. ++++-...+.|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 47888899887677888888889999999864 3 44454 455567888883 233 66666667888
Q ss_pred EEEc-CCCCc-------eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEE
Q psy5792 82 RSIN-LDGSN-------STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFI 152 (377)
Q Consensus 82 ~~~~-~~g~~-------~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l 152 (377)
...+ ..+.. ...+..... +.++.. ++. +..+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~p~---------------------------------------~~~~ 246 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLL---------------------------------------HESL 246 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEE-CSS---------------------------------------CTTE
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEE-eCC---------------------------------------CCCE
Confidence 8888 33221 111111111 222222 110 1235
Q ss_pred EEEeCCCCeEEEEEcCCCCc-eeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEeccccCC
Q psy5792 153 LFSVNSGYDIMGIKYNKNES-KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVETGD 230 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~~~ 230 (377)
+++....+.|+..++..... +....+ ......+..+++.+.+..++++-...+.|...++... .......
T Consensus 247 l~s~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~------ 318 (430)
T 2xyi_A 247 FGSVADDQKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE------ 318 (430)
T ss_dssp EEEEETTSEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE------
T ss_pred EEEEeCCCeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee------
Confidence 55554555799998875421 001111 1234558899999987778887777889999998752 2222222
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC--------------eEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ--------------YRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~--------------~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
..-..+.+|++.+.++.++.+....++|.+.++... ............++.++++|...+++.+-
T Consensus 319 -~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 319 -SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp -CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred -cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 234568899999877788888888888998888651 22222233355689999999766466665
Q ss_pred cCCCCeEEEEecC
Q psy5792 297 SGKIPLIARAGLD 309 (377)
Q Consensus 297 ~g~~~~I~r~~ld 309 (377)
.. .+.|...+++
T Consensus 398 s~-dg~i~iw~~~ 409 (430)
T 2xyi_A 398 SE-DNIMQVWQMA 409 (430)
T ss_dssp ET-TSEEEEEEEC
T ss_pred EC-CCCEEEeEcc
Confidence 42 4555554443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00014 Score=66.64 Aligned_cols=259 Identities=13% Similarity=0.131 Sum_probs=142.8
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEcCCCCceEEEec
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRN 96 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~g~~~~~~~~ 96 (377)
+.++++|. ++.||+.... |..+|.+|. ..... .........++.++.||+... .+.|..++.+|+..-....
T Consensus 62 ~~~~~~~~-~g~l~v~t~~---l~~~d~~g~~~~~~~--~~~~~~~~~~~~~~~l~v~t~-~~~l~~~d~~g~~~~~~~~ 134 (330)
T 3hxj_A 62 ECRPSIGK-DGTIYFGSDK---VYAINPDGTEKWRFD--TKKAIVSDFTIFEDILYVTSM-DGHLYAINTDGTEKWRFKT 134 (330)
T ss_dssp EECCEETT-TTEECCSSCE---EEEECCCGGGGGGSC--C-----CCEEEETTEEEEECT-TSEEEEECTTSCEEEEEEC
T ss_pred ccceEEec-CCcEEEecCc---EEEECCCCcEEEEEE--CCCCcccCceEECCEEEEEec-CCEEEEEcCCCCEEEEEcC
Confidence 35666665 4567664332 889998887 43321 111111223456889988753 4679999855654333221
Q ss_pred CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceee
Q psy5792 97 NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVT 175 (377)
Q Consensus 97 ~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~ 175 (377)
... ...+.+ ..+..++++..+ +.|..++.++. .
T Consensus 135 ~~~~~~~~~~-----------------------------------------~~~g~l~vgt~~-~~l~~~d~~g~-~--- 168 (330)
T 3hxj_A 135 KKAIYATPIV-----------------------------------------SEDGTIYVGSND-NYLYAINPDGT-E--- 168 (330)
T ss_dssp SSCCCSCCEE-----------------------------------------CTTSCEEEECTT-SEEEEECTTSC-E---
T ss_pred CCceeeeeEE-----------------------------------------cCCCEEEEEcCC-CEEEEECCCCC-E---
Confidence 111 111111 011235555432 23777777632 1
Q ss_pred EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC
Q psy5792 176 QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 176 ~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~ 255 (377)
....... ......+.+|. ++.||++. +.|++++.+|....... .....+.++++|. .++||++..
T Consensus 169 ~~~~~~~-~~~~~~~~~d~-~g~l~v~t---~~l~~~d~~g~~~~~~~--------~~~~~~~~~~~~~-~g~l~v~t~- 233 (330)
T 3hxj_A 169 KWRFKTN-DAITSAASIGK-DGTIYFGS---DKVYAINPDGTEKWNFY--------AGYWTVTRPAISE-DGTIYVTSL- 233 (330)
T ss_dssp EEEEECS-SCCCSCCEECT-TCCEEEES---SSEEEECTTSCEEEEEC--------CSSCCCSCCEECT-TSCEEEEET-
T ss_pred eEEEecC-CCceeeeEEcC-CCEEEEEe---CEEEEECCCCcEEEEEc--------cCCcceeceEECC-CCeEEEEcC-
Confidence 1112211 12233445554 67788876 78998886553322222 1224577889984 568888765
Q ss_pred CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE
Q psy5792 256 ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~ 335 (377)
.+.|.+.+.+|......-. ....+..+++|+ ++.||++.. ...|.+.+.+|......... -.....+.+| .+++
T Consensus 234 ~~gl~~~~~~g~~~~~~~~-~~~~~~~~~~~~-~g~l~v~t~--~ggl~~~d~~g~~~~~~~~~-~~~~~~~~~d-~~g~ 307 (330)
T 3hxj_A 234 DGHLYAINPDGTEKWRFKT-GKRIESSPVIGN-TDTIYFGSY--DGHLYAINPDGTEKWNFETG-SWIIATPVID-ENGT 307 (330)
T ss_dssp TTEEEEECTTSCEEEEEEC-SSCCCSCCEECT-TSCEEEECT--TCEEEEECTTSCEEEEEECS-SCCCSCCEEC-TTCC
T ss_pred CCeEEEECCCCCEeEEeeC-CCCccccceEcC-CCeEEEecC--CCCEEEECCCCcEEEEEEcC-CccccceEEc-CCCE
Confidence 3578888887776544332 233456678874 789999874 35899998766554443322 2345567777 4677
Q ss_pred EEEEEeCCCCeEEEEEc
Q psy5792 336 VYWCYSVGSNVLESMDY 352 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~ 352 (377)
||+... .+.+.....
T Consensus 308 l~~gt~--~G~~~~~~~ 322 (330)
T 3hxj_A 308 IYFGTR--NGKFYALFN 322 (330)
T ss_dssp EEEECT--TSCEEEEEC
T ss_pred EEEEcC--CCeEEEEec
Confidence 887654 445544433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0021 Score=60.03 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=140.7
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEE--eCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVV--SMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~--~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+++..++ ++| .+-+..+.|+.-|++.. ..+.. ...+......|++ .++....+-..++.|...+ .+|+..
T Consensus 85 v~~~~~s~d-~~l-~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 85 VADLTWVGE-RGI-LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp EEEEEEETT-TEE-EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEEeCC-CeE-EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 455666654 344 35566788888887654 32221 1134455788888 4455556656677888888 667666
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+.+ +++. ..++++....+.|+..++...
T Consensus 163 ~~~~~h~~~V~~~~~-~~~~---------------------------------------~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAA-SPHK---------------------------------------DSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp EEECCCSSCEEEEEE-CSSC---------------------------------------TTEEEEEETTSCEEEEETTSS
T ss_pred EEEcCcCCceEEEEe-cCCC---------------------------------------CCceeeecccccccccccccc
Confidence 66654333 444443 2211 124444444445888887655
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
.. ...+........+.++++.+.+++++.+-..++.|...++.......... .....+.+|++.+.+.++.
T Consensus 203 ~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-------~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 203 KP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-------VHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp SC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-------CCSSCEEEEEECSSSSCCE
T ss_pred ce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-------CCCCCEEEEEEccCCCeEE
Confidence 33 11111112233477899988778887776677889888886433222222 2344578999987666666
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.+-...++|.+.++.......+ ........++++.|.+..|+.+-.. ...|..-++
T Consensus 274 asgs~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~llas~s~-D~~v~~w~v 329 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVGW-DHQVVHHVV 329 (344)
T ss_dssp EEEETTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEEEEET-TSCEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEEEEcC-CCeEEEEEC
Confidence 6766677899988877654433 2334567899999977777765422 345544444
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0057 Score=57.27 Aligned_cols=282 Identities=11% Similarity=0.026 Sum_probs=157.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc----CCc-E-----EEE-EeCC---------CCCceEEEEE-ECCeEEEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI----EVK-V-----AKV-VSMP---------DAAQVVAAVF-YKGRIIYS 74 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~----dG~-~-----~~i-~~~~---------~~~~p~~lav-~~~~ly~t 74 (377)
+.+.++++.+.++.+..+-...+.|...++ ... . ... +... .......+++ .++.++++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 578899999987724444455688888888 543 2 111 1111 1225677888 33344444
Q ss_pred cCCCCceEEEcCCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 75 DANDGNIRSINLDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 75 d~~~~~I~~~~~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
-..++.|...+.+++....+..... +..+.+ +++.. +|+
T Consensus 126 ~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~-~~~~~---------------------------------------~l~ 165 (425)
T 1r5m_A 126 GVENGELRLWNKTGALLNVLNFHRAPIVSVKW-NKDGT---------------------------------------HII 165 (425)
T ss_dssp EETTSCEEEEETTSCEEEEECCCCSCEEEEEE-CTTSS---------------------------------------EEE
T ss_pred EeCCCeEEEEeCCCCeeeeccCCCccEEEEEE-CCCCC---------------------------------------EEE
Confidence 4456778888866766665553333 444443 22211 233
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCC--------------CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKV--------------SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR 219 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~ 219 (377)
.+.. .+.|+..++..... .. ....... ..+..+++.+ ++.++ +-...+.|...++.....
T Consensus 166 ~~~~-d~~i~iwd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 166 SMDV-ENVTILWNVISGTV--MQ-HFELKETGGSSINAENHSGDGSLGVDVEWVD-DDKFV-IPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp EEET-TCCEEEEETTTTEE--EE-EECCC---------------CCCBSCCEEEE-TTEEE-EECGGGCEEEEETTCSSC
T ss_pred EEec-CCeEEEEECCCCcE--EE-EeeccccCccceeeccccCCcceeeEEEEcC-CCEEE-EEcCCCeEEEEEcCCCce
Confidence 3332 23477777654422 11 1111100 0145566665 35544 444567888888875443
Q ss_pred EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 220 ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 220 ~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
..... .....+..+++.+.+. ++++-...+.|.+.++........+.........+++.|.. .++... .
T Consensus 240 ~~~~~-------~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~ 308 (425)
T 1r5m_A 240 TGKLI-------GHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS--M 308 (425)
T ss_dssp SEEEC-------CCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE--T
T ss_pred eeeec-------cCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe--C
Confidence 33333 2344578899997555 44555556789999887654333333345567899999854 444443 2
Q ss_pred CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 300 ~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
...|...++............-..+..+++.+.+..|+.+ . ..+.|...++....
T Consensus 309 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~-~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 309 DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA-F-MDGQVNVYDLKKLN 363 (425)
T ss_dssp TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE-E-TTSCEEEEECHHHH
T ss_pred CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE-E-CCCeEEEEECCCCc
Confidence 5788888886544433333323567889998665555544 4 56778888876443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0052 Score=56.46 Aligned_cols=274 Identities=9% Similarity=-0.018 Sum_probs=154.3
Q ss_pred CCccccccCC---CCeEEEEeCCCCcEEEEEcCCc-EEEE-EeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCC
Q psy5792 17 AVASTLKPQS---GPFVYGVKTLSHSLHYVNIEVK-VAKV-VSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 17 ~~~~~~~d~~---~~~ly~~d~~~~~I~~~~~dG~-~~~i-~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
.+.+++..+. ++.+..+-+..+.|..-+++.. .... ...........+++ ..+.+..+-..++.|...+ .+|+
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~ 113 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 4555665442 2345556666677777776554 2221 11234445677777 4455666666677888888 6666
Q ss_pred ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
....+..... +..+.+ +|+. ..+++....+.|+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~-spdg----------------------------------------~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAF-SPDS----------------------------------------QYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEEEECCTTCCCCEEE-CTTS----------------------------------------SEEEEECTTSEEEEEETT
T ss_pred EEEEEeCCCccEEEEEE-CCCC----------------------------------------CEEEEEcCCCcEEEEEcC
Confidence 5555543222 222322 2221 234444445568888887
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.... .. .+ ......+.++++.+.+..|.... ..+.|...++.......... .....+..+++.+. +.
T Consensus 153 ~~~~--~~-~~-~~~~~~v~~~~~spdg~~lasg~-~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~spd-~~ 219 (321)
T 3ow8_A 153 SGKK--EY-SL-DTRGKFILSIAYSPDGKYLASGA-IDGIINIFDIATGKLLHTLE-------GHAMPIRSLTFSPD-SQ 219 (321)
T ss_dssp TCSE--EE-EE-ECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEEC-------CCSSCCCEEEECTT-SC
T ss_pred CCce--eE-Ee-cCCCceEEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEc-------ccCCceeEEEEcCC-CC
Confidence 6533 11 11 12234578899998776666554 56788888886433222222 22345789999975 44
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla 328 (377)
+..+-...+.|.+.++........+.........+++.|...+|+-+.. ...|...++........+...-....+++
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS--DKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 5566666788999998766544444444556789999996666655543 45677777654332222222234567788
Q ss_pred EeCCCCEEEEEEeCCCCeEE
Q psy5792 329 LDRKNKRVYWCYSVGSNVLE 348 (377)
Q Consensus 329 lD~~~~~LYw~d~~~~~~i~ 348 (377)
+.+.+..|.-+ . ..++|.
T Consensus 298 ~s~~g~~l~s~-~-~d~~i~ 315 (321)
T 3ow8_A 298 YNGNGSKIVSV-G-DDQEIH 315 (321)
T ss_dssp ECTTSSEEEEE-E-TTCCEE
T ss_pred ECCCCCEEEEE-e-CCCeEE
Confidence 87554444433 3 344443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00027 Score=70.68 Aligned_cols=269 Identities=9% Similarity=-0.056 Sum_probs=152.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCC-CceEEEEEECC-eEEEEcC--CCC--ceEEEcC--C
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDA-AQVVAAVFYKG-RIIYSDA--NDG--NIRSINL--D 87 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~-~~p~~lav~~~-~ly~td~--~~~--~I~~~~~--~ 87 (377)
.+.+++..+++++|.++....+.+...+++|. .+++. ... ....++++..| .+|+++. ... .|+.++. +
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECC--SSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeee--cccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 35677888888899887665666766667888 76664 222 34555666333 5666765 222 5666775 6
Q ss_pred CCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 88 GSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 88 g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
|... .+....+.... ..+++.+ ..++.+.... .+...++
T Consensus 101 g~~~-~l~~~~~~~~~-~~s~dg~--------------------------------------~~~~~s~~~~-~~~l~d~ 139 (582)
T 3o4h_A 101 GEEQ-RLEAVKPMRIL-SGVDTGE--------------------------------------AVVFTGATED-RVALYAL 139 (582)
T ss_dssp TCCE-ECTTSCSBEEE-EEEECSS--------------------------------------CEEEEEECSS-CEEEEEE
T ss_pred Cccc-cccCCCCceee-eeCCCCC--------------------------------------eEEEEecCCC-CceEEEc
Confidence 6554 22221112211 2233221 1233333222 2445566
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC---CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID---HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~---~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
++... ..+..... ..+++++.+..|+++... ...|+.+++++...+.+.. .......+++.+
T Consensus 140 ~~g~~---~~l~~~~~----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~--------~~~~~~~~~~Sp 204 (582)
T 3o4h_A 140 DGGGL---RELARLPG----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS--------GEGSFSSASISP 204 (582)
T ss_dssp ETTEE---EEEEEESS----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC--------SSCEEEEEEECT
T ss_pred cCCcE---EEeecCCC----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec--------CCCccccceECC
Confidence 55432 12221111 567777878999876532 1579999988766665543 344567889988
Q ss_pred cCCeEEEEcCCC-CEEEEEEcCCCeEEEEeeCCCCCceeEE--------EcCCCCeEEEEecCCCCeEEEEecCCCCeEE
Q psy5792 245 IAQNIYWSDPKE-NVIEVARLTGQYRYVLISGGVDQPSALA--------VDPESGYLFWSESGKIPLIARAGLDGKKQTI 315 (377)
Q Consensus 245 ~~~~lYwtd~~~-~~I~~~~~~g~~~~~l~~~~~~~P~~ia--------vdp~~g~lywtd~g~~~~I~r~~ldG~~~~~ 315 (377)
.++.|+.++... .+|++.++++...+ ++......+.+++ ++|.. .+|++-.. ..++....+ |+..+
T Consensus 205 DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~-~g~~~l~~~-g~~~~- 279 (582)
T 3o4h_A 205 GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARR-EGRSAVFID-GERVE- 279 (582)
T ss_dssp TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEE-TTEEEEEET-TEEEC-
T ss_pred CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEc-CCcEEEEEE-CCeec-
Confidence 888888544432 38999999987766 5544333455566 89865 77776542 345555555 43221
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCC---CeEEEEEccC
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGS---NVLESMDYSG 354 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~---~~i~~~~~~G 354 (377)
.......++++. +++++++-. .. ..++.++.++
T Consensus 280 ---~~~~~v~~~~~s--dg~~l~~~s-~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 ---APQGNHGRVVLW--RGKLVTSHT-SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ---CCSSEEEEEEEE--TTEEEEEEE-ETTEEEEEEEETTCC
T ss_pred ---cCCCceEEEEec--CCEEEEEEc-CCCCCCeEEEEcCCC
Confidence 112345567776 455555433 22 4566666654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0025 Score=61.35 Aligned_cols=232 Identities=10% Similarity=0.006 Sum_probs=133.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcC--Cc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIE--VK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d--G~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
.+.++++.+.+.+|+.+-...+.|...+++ +. .+.+........+.++++ .+..|+.++. .+.|..++ .+++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIP 182 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcc
Confidence 678999999988888888788989999887 44 555531123456788888 3446666654 67788887 5554
Q ss_pred ceE----EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 90 NST----VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 90 ~~~----~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
... .+..... +..+.+ +++.. ...+|+.+. ..+.|+.
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~-sp~~~------------------------------------~~~~l~s~~-~d~~i~v 224 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHL-IKDSD------------------------------------GHQFIITSD-RDEHIKI 224 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEE-EECTT------------------------------------SCEEEEEEE-TTSCEEE
T ss_pred cccccceeeecccCceEEEEE-cCCCC------------------------------------CCcEEEEEc-CCCcEEE
Confidence 321 2211112 333332 22200 011344443 3346888
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc--C-------------
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET--G------------- 229 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~--~------------- 229 (377)
.++..... ... ........+..+++. .+..|+... ..+.|...++........+..... .
T Consensus 225 wd~~~~~~--~~~-~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 225 SHYPQCFI--VDK-WLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp EEESCTTC--EEE-ECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred EECCCCce--eee-eecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 88865533 111 111233557888888 566666554 678888888864432222210000 0
Q ss_pred ---CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc--CCC---eEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 230 ---DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL--TGQ---YRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 230 ---~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~--~g~---~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
....-..+.+|++.+.++.||.+....+.|.+.++ ... .....+... ..+.+++++| ++ ++.+
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~ 370 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVT 370 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEE
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEE
Confidence 00001236678888777788888767788999888 322 222223333 6789999998 44 4554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0068 Score=58.02 Aligned_cols=193 Identities=9% Similarity=0.120 Sum_probs=121.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCc--eeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC---CcEEEEec
Q psy5792 152 ILFSVNSGYDIMGIKYNKNES--KVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT---GRENIIEY 225 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~--~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~---~~~~i~~~ 225 (377)
++++....|.|+..++..... ........+ .....+..+++.+.++.++.+....+.|...++... .......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~- 274 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD- 274 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-
Confidence 445555555688888875321 000001111 233458899999877888888878899999998743 1222222
Q ss_pred cccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC-CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 226 VETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG-QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
..-..+..|++.+.+.+++++-...+.|.+.++.. ......+........+++++|.+..++.+-.. ..+|.
T Consensus 275 ------~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~-d~~i~ 347 (430)
T 2xyi_A 275 ------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLH 347 (430)
T ss_dssp ------CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET-TSCCE
T ss_pred ------cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC-CCcEE
Confidence 23345889999987777888888889999999976 22222233335567999999977777777643 35555
Q ss_pred EEecCC--C-----------CeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 305 RAGLDG--K-----------KQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 305 r~~ldG--~-----------~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..++.. . ........ .-..+..+++.+....++.+-. ..+.|...+++
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~dg~i~iw~~~ 409 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS-EDNIMQVWQMA 409 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE-TTSEEEEEEEC
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE-CCCCEEEeEcc
Confidence 555543 1 12222221 1345889999876654777766 77777766665
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00057 Score=64.06 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=132.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EE---EEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VA---KVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~---~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
.+.+++..+++ ++. +-+..+.|..-|+... .. .+...........|++ .++...++-..++.|...+ .+++.
T Consensus 96 ~V~~~~~s~d~-~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~ 173 (357)
T 4g56_B 96 GVTDVAWVSEK-GIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV 173 (357)
T ss_dssp CEEEEEEETTT-EEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEEcCCC-CEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35566666654 332 3445667777665443 11 1111123345678888 3445555555667888888 56655
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
...+..... +..+++ +++. ..++++....+.|+..++..
T Consensus 174 ~~~~~~h~~~v~~v~~-s~~~---------------------------------------~~~~~s~~~dg~v~~wd~~~ 213 (357)
T 4g56_B 174 LKSYNAHSSEVNCVAA-CPGK---------------------------------------DTIFLSCGEDGRILLWDTRK 213 (357)
T ss_dssp EEEECCCSSCEEEEEE-CTTC---------------------------------------SSCEEEEETTSCEEECCTTS
T ss_pred EEEEcCCCCCEEEEEE-ccCC---------------------------------------CceeeeeccCCceEEEECCC
Confidence 555543333 444443 2211 11333333333477776654
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
... ...+........+..+++.+.++.++.+-...+.|...++.......... .....+.+|++.+.++++
T Consensus 214 ~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 214 PKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-------VHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp SSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-------CCSSCEEEEEECSSSSCC
T ss_pred Cce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-------ccceeEEEEEEcCCCCCE
Confidence 432 11111112233478899988777777665567888888886433333332 234457889998766666
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 250 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 250 Ywtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
..+-...++|.+.+++......... .....+++++.|..+.++.+-.. ...|..-++.
T Consensus 285 lasgs~D~~i~iwd~~~~~~~~~~~-H~~~V~~vafsP~d~~~l~s~s~-Dg~v~iW~~~ 342 (357)
T 4g56_B 285 LASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFTTVGW-DHKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEECTTSCEEEEECC-CSSCEEEEEECSSSTTEEEEEET-TSCEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCcEeEECC-CCCCEEEEEEeCCCCCEEEEEcC-CCeEEEEECC
Confidence 6666666789999988765433332 34557899999876666665432 3555555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.01 Score=56.40 Aligned_cols=261 Identities=9% Similarity=0.022 Sum_probs=151.6
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+..+++.+... +..+-+..+.|...|+... .+++. ........+++ .++.+..+-..++.|...+ .+++...
T Consensus 110 ~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 110 PVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp CEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence 566777877654 4455566788999998765 55553 44556788888 4555666666677888888 4444444
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.+..... +..+.+ +++. . .+++....+.|+..++....
T Consensus 187 ~~~~h~~~V~~v~~-~p~~---------------------------------------~-~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 187 TMHGHDHNVSSVSI-MPNG---------------------------------------D-HIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp CCCCCSSCEEEEEE-CSSS---------------------------------------S-EEEEEETTSEEEEEETTTCC
T ss_pred EEcCCCCCEEEEEE-eCCC---------------------------------------C-EEEEEeCCCeEEEEECCCCc
Confidence 3332222 333332 2221 1 33333334468888876543
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC-----
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA----- 246 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~----- 246 (377)
. ...+ ......+..+++.+.+ .++.+-...+.|...++.......... ..-..+..+++.+..
T Consensus 226 ~--~~~~--~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 226 C--VKTF--TGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELR-------EHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp E--EEEE--ECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECCSCGGGGG
T ss_pred E--EEEE--eCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEec-------CCCceEEEEEEcCcccccch
Confidence 2 1111 1223346777887744 445555567888888886544333332 233346677776532
Q ss_pred --------------CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 247 --------------QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 247 --------------~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
+.+.++-...+.|...++........+.......++++++|...+|+-+.. ...|...++....
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD--DKTLRVWDYKNKR 371 (410)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET--TTEEEEECCTTSC
T ss_pred hhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCc
Confidence 456677777789999998766544334444556789999996666665543 4677777775433
Q ss_pred -eEEEEecCCCCceEEEEeCCCCEE
Q psy5792 313 -QTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 313 -~~~l~~~~~~~P~glalD~~~~~L 336 (377)
...+.. .-....++++.+....|
T Consensus 372 ~~~~~~~-h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 372 CMKTLNA-HEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp CCEEEEC-CSSCEEEEEECSSSSCE
T ss_pred eEEEEcC-CCCcEEEEEEcCCCCEE
Confidence 333322 23456778876544333
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0035 Score=64.05 Aligned_cols=284 Identities=9% Similarity=0.051 Sum_probs=154.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCC--ceEEEEE--ECCeEEEEcCC--------CCceE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAA--QVVAAVF--YKGRIIYSDAN--------DGNIR 82 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~--~p~~lav--~~~~ly~td~~--------~~~I~ 82 (377)
..+.+++..+++..+|- +..+.|...++++. .+.++...... .+.++++ .+.+|.++... ...|+
T Consensus 17 ~~~~~~~~spdg~~~~~--~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR--EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCC--CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEE--eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 35777888887775532 56678999999877 55555221111 3677888 45566666332 14566
Q ss_pred EEc-CCCCceEEEecCCC----ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC
Q psy5792 83 SIN-LDGSNSTVLRNNAG----ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN 157 (377)
Q Consensus 83 ~~~-~~g~~~~~~~~~~~----p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~ 157 (377)
..+ .+|+. +.+..... +..+. ++|+ ...|.++..
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~-~SPd---------------------------------------G~~la~~~~ 133 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAG-WGPK---------------------------------------GQQLIFIFE 133 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCC-BCSS---------------------------------------TTCEEEEET
T ss_pred EEECCCCce-EeccCCccccccccccE-ECCC---------------------------------------CCEEEEEEC
Confidence 666 33432 22221100 00010 1111 124656555
Q ss_pred CCCeEEEEEcCCCCceeeEEEEecCC-----------------CCceEEEEEECCCCEEEEEEcCC--------------
Q psy5792 158 SGYDIMGIKYNKNESKVTQVLGPLSK-----------------VSLAAKVDFHAAEDYIYWVDIDH-------------- 206 (377)
Q Consensus 158 ~~~~I~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~l~~d~~~~~ly~sd~~~-------------- 206 (377)
.. |+.+++++... ..+..... .....++++.+.+++|.++....
T Consensus 134 ~~--i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~ 208 (723)
T 1xfd_A 134 NN--IYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (723)
T ss_dssp TE--EEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred Ce--EEEEECCCCce---EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence 44 88888876543 11211100 11336788988888888775322
Q ss_pred -------------------CcEEEEEcCCCCcEEEEeccccCCCCC------CCCcceEEEeccCCeEE-EEcCC--CCE
Q psy5792 207 -------------------GTISRTHRDGTGRENIIEYVETGDPTP------VDQFTDIAVDWIAQNIY-WSDPK--ENV 258 (377)
Q Consensus 207 -------------------~~I~~~~~~G~~~~~i~~~~~~~~~~~------~~~p~~iavD~~~~~lY-wtd~~--~~~ 258 (377)
..|+..++++......+. .. ......+++.+.++.|+ +++.. ...
T Consensus 209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 281 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-------PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (723)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-------CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-------CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE
Confidence 145566665433211111 11 11244577776555553 33432 347
Q ss_pred EEEEEcCCCeEEEEeeC---CCCC--ceeEEEcCCCCeEEEE-ecCC-----CCeEEEEe-cCCCC---eEEEEecCCCC
Q psy5792 259 IEVARLTGQYRYVLISG---GVDQ--PSALAVDPESGYLFWS-ESGK-----IPLIARAG-LDGKK---QTILAQEIIMP 323 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~~---~~~~--P~~iavdp~~g~lywt-d~g~-----~~~I~r~~-ldG~~---~~~l~~~~~~~ 323 (377)
|.+.++++.....+... .... +..++..|.+..|+++ .... ..+|+..+ .++.. .+.+.......
T Consensus 282 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 282 LTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred EEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 88889887655544332 1111 2478999988878875 3221 23688888 56655 44444322222
Q ss_pred ceEEEEeCCCCEEEEEEeCC----CCeEEEEEccCC
Q psy5792 324 IKDITLDRKNKRVYWCYSVG----SNVLESMDYSGG 355 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~~~----~~~i~~~~~~G~ 355 (377)
...+++++.+++||++.. . ...|+.++.+|+
T Consensus 362 ~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLST-EDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEEEEEETTTTEEEEEES-SSCTTCCEEEEECSSTT
T ss_pred EeeeEEcCCCCEEEEEEc-CCCCcceEEEEEeCCCC
Confidence 223689999999998865 3 356888887765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.94 E-value=0.013 Score=54.57 Aligned_cols=282 Identities=9% Similarity=-0.033 Sum_probs=160.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--------EEEEEeCCCCCceEEEEEE-C----C---eEEEEcCCCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--------VAKVVSMPDAAQVVAAVFY-K----G---RIIYSDANDG 79 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--------~~~i~~~~~~~~p~~lav~-~----~---~ly~td~~~~ 79 (377)
+.+.+++.++ .++++-+..+.|...+++.. ...+. ........+++. + + .++++-..++
T Consensus 17 ~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 17 ADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 4667788766 45556666788888887653 33343 444556788883 3 4 5555555667
Q ss_pred ceEEEc-CCCCc-----eEEEecC-----CC-ceeEEeee---cCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 80 NIRSIN-LDGSN-----STVLRNN-----AG-ISDFILFS---VNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 80 ~I~~~~-~~g~~-----~~~~~~~-----~~-p~~i~v~~---~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
.|...+ .+++. ...+... .. +..+.+.. ++.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------- 137 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL---------------------------------- 137 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------------------------------
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC----------------------------------
Confidence 888888 45543 4444322 12 44444320 111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCC------CCc-ee--eEEEEe-----cCCCCceEEEEEECCCCEEEEEEcCCCcEE
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNK------NES-KV--TQVLGP-----LSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~------~~~-~~--~~~~~~-----~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~ 210 (377)
..++++....|.|+..++.. ... .+ ...+.. ......+..+++.+.+ ++++-...+.|.
T Consensus 138 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~ 210 (397)
T 1sq9_A 138 -----SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQ 210 (397)
T ss_dssp -----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEE
T ss_pred -----ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEE
Confidence 23133333334577777765 221 00 001110 1224457889999855 555555778999
Q ss_pred EEEcCCCCcEEEEeccccCCCC---C---CCCcceEEEeccCCeEEEEcCCC---CEEEEEEcCCCeEEEEeeC------
Q psy5792 211 RTHRDGTGRENIIEYVETGDPT---P---VDQFTDIAVDWIAQNIYWSDPKE---NVIEVARLTGQYRYVLISG------ 275 (377)
Q Consensus 211 ~~~~~G~~~~~i~~~~~~~~~~---~---~~~p~~iavD~~~~~lYwtd~~~---~~I~~~~~~g~~~~~l~~~------ 275 (377)
..++........+. . . -..+..+++++....| ++-... +.|.+.++........+..
T Consensus 211 i~d~~~~~~~~~~~-------~~~~h~~~~~~i~~i~~~~~~~~l-~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 211 ISELSTLRPLYNFE-------SQHSMINNSNSIRSVKFSPQGSLL-AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp EEETTTTEEEEEEE-------CCC---CCCCCEEEEEECSSTTEE-EEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred EEECCCCceeEEEe-------ccccccccCCccceEEECCCCCEE-EEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 99987433323333 2 2 4458899998755444 454444 7899999875543333332
Q ss_pred -------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe------cC---------------CCCceEE
Q psy5792 276 -------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ------EI---------------IMPIKDI 327 (377)
Q Consensus 276 -------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~------~~---------------~~~P~gl 327 (377)
.......++++|...+|+.... ...|...++........+. .. -.....+
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 3455789999997666666553 4688888876544333333 11 2456788
Q ss_pred EEeCCCC---------EEEEEEeCCCCeEEEEEccC
Q psy5792 328 TLDRKNK---------RVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 328 alD~~~~---------~LYw~d~~~~~~i~~~~~~G 354 (377)
++.+.+. +++++-. ..+.|...++++
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~ 395 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVC-LDRSIRWFREAG 395 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEE-TTTEEEEEEEEC
T ss_pred EeccccccccccccccceEEEec-CCCcEEEEEcCC
Confidence 8876542 4555555 567777666654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.017 Score=55.51 Aligned_cols=239 Identities=8% Similarity=0.008 Sum_probs=135.5
Q ss_pred ceEEEEE--ECCeEEEEcCCCCceEEEc-C--CCCceEEEec--CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccc
Q psy5792 60 QVVAAVF--YKGRIIYSDANDGNIRSIN-L--DGSNSTVLRN--NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLG 131 (377)
Q Consensus 60 ~p~~lav--~~~~ly~td~~~~~I~~~~-~--~g~~~~~~~~--~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~ 131 (377)
...++++ .+..|+++-..++.|...+ . +|+....+.. ... +.++++ +++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~--------------------- 161 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI-AEDD--------------------- 161 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE-CTTS---------------------
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEE-cCCC---------------------
Confidence 3567777 4445566666667777777 4 5666555532 111 444443 2221
Q ss_pred cCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeE-EEEec-CCCCceEEEEEECC--CCEEEEEEcCCC
Q psy5792 132 PLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQ-VLGPL-SKVSLAAKVDFHAA--EDYIYWVDIDHG 207 (377)
Q Consensus 132 ~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~-~~~~~-~~~~~~~~l~~d~~--~~~ly~sd~~~~ 207 (377)
.+|+.+.. .|.|+.+++..... .. ....+ .....+..+++.+. .+.++++-...+
T Consensus 162 ------------------~~l~~~~~-~g~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 162 ------------------TTVIIADK-FGDVYSIDINSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp ------------------SEEEEEET-TSEEEEEETTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred ------------------CEEEEEeC-CCcEEEEecCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 24555544 44688888765432 10 00011 12345788999985 144444444668
Q ss_pred cEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC-----------
Q psy5792 208 TISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG----------- 275 (377)
Q Consensus 208 ~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~----------- 275 (377)
.|...++..... ..+.. .....+.++++. .+.++++-...++|.+.++........+..
T Consensus 221 ~i~vwd~~~~~~~~~~~~-------~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKWLF-------GHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp CEEEEEESCTTCEEEECC-------CCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred cEEEEECCCCceeeeeec-------CCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 888888864432 23232 233457888887 455555656678999999876543322221
Q ss_pred --------------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEec--CCCC-eE--EEEecCCCCceEEEEeCCCCEE
Q psy5792 276 --------------GVDQPSALAVDPESGYLFWSESGKIPLIARAGL--DGKK-QT--ILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 276 --------------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l--dG~~-~~--~l~~~~~~~P~glalD~~~~~L 336 (377)
.-....+|+..|...+|+.+... ...|...++ .... .+ ..+... ..+..+++++ +.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~ 367 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-TKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEF 367 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETT-CSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECC-CCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcE
Confidence 11235789999988888888743 466766666 2221 11 112222 6788999986 456
Q ss_pred EEEEeCCCC---------eEEEEEccCC
Q psy5792 337 YWCYSVGSN---------VLESMDYSGG 355 (377)
Q Consensus 337 Yw~d~~~~~---------~i~~~~~~G~ 355 (377)
+.+-. ... .|+.++.+++
T Consensus 368 ~v~~~-~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 368 QVTLD-NKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EEEEC-CTTCCSSCCCSEEEEEEETTTT
T ss_pred EEEEe-cccCCCCCCcceEEEEEEcCCC
Confidence 66644 321 6777776644
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.011 Score=55.62 Aligned_cols=225 Identities=12% Similarity=0.020 Sum_probs=135.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCC--------c-EEEEEeCCCCCceEEEEEECC--eEEEEcCCCCceEEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV--------K-VAKVVSMPDAAQVVAAVFYKG--RIIYSDANDGNIRSI 84 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG--------~-~~~i~~~~~~~~p~~lav~~~--~ly~td~~~~~I~~~ 84 (377)
..+.+++..+.++.++.+-+..+.|...++.. . ...+. ........|++..+ .++++-..++.|...
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 36778888884455556666678898888765 3 34443 45567788888332 466666677888888
Q ss_pred c-CCCCceEEE--ecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC
Q psy5792 85 N-LDGSNSTVL--RNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY 160 (377)
Q Consensus 85 ~-~~g~~~~~~--~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~ 160 (377)
+ .+++....+ ..... +..+.+ +++. ..|+.+. ..+
T Consensus 160 d~~~~~~~~~~~~~~~~~~v~~~~~-~~~~---------------------------------------~~l~~~~-~d~ 198 (402)
T 2aq5_A 160 DVGTGAAVLTLGPDVHPDTIYSVDW-SRDG---------------------------------------ALICTSC-RDK 198 (402)
T ss_dssp ETTTTEEEEEECTTTCCSCEEEEEE-CTTS---------------------------------------SCEEEEE-TTS
T ss_pred ECCCCCccEEEecCCCCCceEEEEE-CCCC---------------------------------------CEEEEEe-cCC
Confidence 8 666555555 22222 444443 2221 1244333 334
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEE---cCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVD---IDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQ 236 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd---~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~ 236 (377)
.|+..++..... ...+........+..+++.+. +.++.+- ...+.|...++..... ...... .....
T Consensus 199 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~ 269 (402)
T 2aq5_A 199 RVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQEL------DTSSG 269 (402)
T ss_dssp EEEEEETTTTEE--EEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC------CCCSS
T ss_pred cEEEEeCCCCce--eeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEec------cCCCc
Confidence 688888765432 111111222233678888874 5555554 4567888888875332 122210 23345
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCe--EEEEeeC-CCCCceeEEEcCCCCeE
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQY--RYVLISG-GVDQPSALAVDPESGYL 292 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~--~~~l~~~-~~~~P~~iavdp~~g~l 292 (377)
+..+++++.++.||.+....+.|.+.++.... ...+... ......++++.|....+
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccc
Confidence 88899999888898888778889999987654 3333321 23557899999854443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.015 Score=59.89 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=99.3
Q ss_pred eEEEEEECCCCEEEEEEcC----CCcEEEEEcCCC--C-cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC---CC
Q psy5792 187 AAKVDFHAAEDYIYWVDID----HGTISRTHRDGT--G-RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP---KE 256 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~----~~~I~~~~~~G~--~-~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~---~~ 256 (377)
..++.+.+.+.+|+++... ...|+.+++++. . .+.+.. ........ +.+.++.||+... .+
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--------~~~~~~~~-~~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP--------DLKAQWDF-VDGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC--------SSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC--------CCCceEEE-EeccCCEEEEEECCCCCC
Confidence 6788888878888876542 358999998765 3 445543 22222222 3355788877633 25
Q ss_pred CEEEEEEcCC--CeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 257 NVIEVARLTG--QYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 257 ~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
.+|.+.++++ ...+.++........+++.+ ++.|+++... ...+|+..+++|...+.+.........+++.++.+
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~ 418 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD 418 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC
T ss_pred CEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC
Confidence 6899999987 34455655433334566665 6778877532 24688888988775544432123445667777666
Q ss_pred CEEEEEEe--CCCCeEEEEEccCCce
Q psy5792 334 KRVYWCYS--VGSNVLESMDYSGGSK 357 (377)
Q Consensus 334 ~~LYw~d~--~~~~~i~~~~~~G~~~ 357 (377)
+.|+++-. ....+|+..++.++..
T Consensus 419 ~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 419 RHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 67776533 1346888999886543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.017 Score=53.10 Aligned_cols=246 Identities=10% Similarity=0.057 Sum_probs=136.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc----EEEEEeCCCCCceEEEEEE-C--CeEEEEcCCCCceEEEc-CC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK----VAKVVSMPDAAQVVAAVFY-K--GRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~----~~~i~~~~~~~~p~~lav~-~--~~ly~td~~~~~I~~~~-~~ 87 (377)
+.+.++++.+.+.+|... ...+.|...++++. ...+ .........|++. . +.++++-..++.|...+ .+
T Consensus 12 ~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTL--TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred ccEEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcceeeeEe--cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 357788888877666444 45678888888644 2223 2344566788883 2 45555545567888888 55
Q ss_pred CC--ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 88 GS--NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 88 g~--~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
++ ....+..... +..+.+ +++.. ..+++.+. ..+.|+.
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~-~~~~~-------------------------------------~~~l~~~~-~d~~i~v 129 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQW-APHEY-------------------------------------GPLLLVAS-SDGKVSV 129 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEE-CCGGG-------------------------------------CSEEEEEE-TTSEEEE
T ss_pred CceeEeeeecCCCcceEEEEe-CCCCC-------------------------------------CCEEEEec-CCCcEEE
Confidence 54 2222222222 344433 22100 01333333 3346888
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECC------------CCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCC
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAA------------EDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDP 231 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~------------~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~ 231 (377)
.++..... ............+..+++.+. ++.++++-...+.|...++...... .+... ..
T Consensus 130 ~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~--- 203 (379)
T 3jrp_A 130 VEFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LE--- 203 (379)
T ss_dssp EECCTTSC--CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE-EC---
T ss_pred EecCCCCc--eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE-Ee---
Confidence 88866532 111222233455788888874 3444445446678888877643322 11110 00
Q ss_pred CCCCCcceEEEeccC--CeEEEEcCCCCEEEEEEcCCCe---EEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 232 TPVDQFTDIAVDWIA--QNIYWSDPKENVIEVARLTGQY---RYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 232 ~~~~~p~~iavD~~~--~~lYwtd~~~~~I~~~~~~g~~---~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
.....+.++++.+.. +.++.+-...+.|.+.+++... ...+... ......+++++|...+|+.+.....-+|+
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 223457889998763 5666666667788888887642 2233322 23456889999977777776643233445
Q ss_pred EEecC
Q psy5792 305 RAGLD 309 (377)
Q Consensus 305 r~~ld 309 (377)
..+..
T Consensus 284 ~~~~~ 288 (379)
T 3jrp_A 284 KENLE 288 (379)
T ss_dssp EEEET
T ss_pred eCCCC
Confidence 54443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0037 Score=63.87 Aligned_cols=152 Identities=9% Similarity=0.035 Sum_probs=87.4
Q ss_pred ceEEEEEECCCCEEEE-EEcC--CCcEEEEEcCCCCcEEEEeccccCCCCC-CC-CcceEEEeccCCeEEEE-cCCCC--
Q psy5792 186 LAAKVDFHAAEDYIYW-VDID--HGTISRTHRDGTGRENIIEYVETGDPTP-VD-QFTDIAVDWIAQNIYWS-DPKEN-- 257 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~-sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~-~~-~p~~iavD~~~~~lYwt-d~~~~-- 257 (377)
....+++.+.+..|+. ++.. ...|+.+++++.....+..... .. +. .+..+++.+.++.|+++ ....+
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES----EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC----SSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc----CCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 4567888886666643 3432 2468888887655444432000 01 11 02467888777778875 43333
Q ss_pred ----EEEEEE-cCCCe---EEEEeeCCCCCceeEEEcCCCCeEEEEecC---CCCeEEEEecCCCC-eEEEEec--CCCC
Q psy5792 258 ----VIEVAR-LTGQY---RYVLISGGVDQPSALAVDPESGYLFWSESG---KIPLIARAGLDGKK-QTILAQE--IIMP 323 (377)
Q Consensus 258 ----~I~~~~-~~g~~---~~~l~~~~~~~P~~iavdp~~g~lywtd~g---~~~~I~r~~ldG~~-~~~l~~~--~~~~ 323 (377)
+|+..+ .++.. .+.+..........++++|.+..||++... ...+|++++++|.. .+.+... .-..
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 411 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT 411 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCC
Confidence 688888 55554 444433222222336899999999887543 24679999988753 3332211 0123
Q ss_pred ceEEEEeCCCCEEEEEEe
Q psy5792 324 IKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~ 341 (377)
...+++.+.+++|.+.-.
T Consensus 412 ~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 412 YFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CCEEEECTTSSEEEEECC
T ss_pred eEEEEECCCCCEEEEEcc
Confidence 456788777777766544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.022 Score=53.70 Aligned_cols=236 Identities=10% Similarity=0.012 Sum_probs=144.9
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEcC--CCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINL--DGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~--~g~~~ 91 (377)
..+.+++..+.+..|+.. +..+.|...++... .+++. ........+++.++.++.. ..++.|...+. .+...
T Consensus 135 ~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVG-LGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSSG-SRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp CCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred CCEEEEEECCCCCEEEEE-CCCCeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEEE-cCCCCEEEEecccCccee
Confidence 357788888866655444 45678999998766 55443 4455667777766555544 45677887773 23334
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +.++.+ +++. ..++.+. ..+.|+..++...
T Consensus 211 ~~~~~~~~~v~~~~~-~~~~---------------------------------------~~l~s~~-~d~~v~iwd~~~~ 249 (401)
T 4aez_A 211 GTLQGHSSEVCGLAW-RSDG---------------------------------------LQLASGG-NDNVVQIWDARSS 249 (401)
T ss_dssp EEEECCSSCEEEEEE-CTTS---------------------------------------SEEEEEE-TTSCEEEEETTCS
T ss_pred eEEcCCCCCeeEEEE-cCCC---------------------------------------CEEEEEe-CCCeEEEccCCCC
Confidence 44433323 444443 2221 1343333 3345888888765
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEc--CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI--DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~--~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.. ..........+.++++.+.+..++.+-. ..+.|...++.......... .-..+.++++.+.+..
T Consensus 250 ~~----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--------~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 250 IP----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--------AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp SE----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--------CSSCEEEEEECSSSSE
T ss_pred Cc----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--------CCCcEEEEEECCCCCe
Confidence 33 1111123445788999987778887754 57889999987544333333 2345889999887666
Q ss_pred EEEEc-CCCCEEEEEEcCCCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 249 IYWSD-PKENVIEVARLTGQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 249 lYwtd-~~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
|+.+. ...+.|.+.++........ +.........++++|...+|+.+.. ...|...++..
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~--dg~i~iw~~~~ 380 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS--DENLKFWRVYD 380 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT--TSEEEEEECCC
T ss_pred EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEECCC
Confidence 76653 3578899999877543332 3344566889999996666666543 46777777654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.02 Score=53.16 Aligned_cols=239 Identities=11% Similarity=-0.002 Sum_probs=136.3
Q ss_pred eEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEe----cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCC
Q psy5792 61 VVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR----NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLS 134 (377)
Q Consensus 61 p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~----~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~ 134 (377)
...+++..+..+++-..++.|+..+ .+|+...++. .... +..+++ +++.
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~-spdg------------------------ 139 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV-LSSG------------------------ 139 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE-CTTS------------------------
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE-CCCC------------------------
Confidence 5667775554455556677888888 5665543322 1112 344443 2222
Q ss_pred CccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEE
Q psy5792 135 KVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTH 213 (377)
Q Consensus 135 ~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~ 213 (377)
-++++....+.|+..++.... .+..+.+ ...+..+++.+.+..++.+-...+.|...+
T Consensus 140 ----------------~~l~sgs~d~~i~iwd~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd 198 (344)
T 4gqb_B 140 ----------------TQAVSGSKDICIKVWDLAQQV-----VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198 (344)
T ss_dssp ----------------SEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ----------------CEEEEEeCCCeEEEEECCCCc-----EEEEEcCcCCceEEEEecCCCCCceeeecccccccccc
Confidence 133444334458888886552 2233333 445788999887777888776778898888
Q ss_pred cCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEE
Q psy5792 214 RDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLF 293 (377)
Q Consensus 214 ~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly 293 (377)
+........+.. ...-..+..+++.+.+++++.+-...+.|.+.++........+........++++.|....+.
T Consensus 199 ~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 199 TRCPKPASQIGC-----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp TTSSSCEEECC---------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCE
T ss_pred ccccceeeeeec-----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEE
Confidence 864332222210 011224778888877788888877778999999875443222333455678999998665544
Q ss_pred EEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 294 WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 294 wtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.+-. ....|...++.......+ ..--....++++.+.+++|..+-. ..++|..-++.
T Consensus 274 asgs-~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~llas~s-~D~~v~~w~v~ 330 (344)
T 4gqb_B 274 ASLS-EDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTTVG-WDHQVVHHVVP 330 (344)
T ss_dssp EEEE-TTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEEEEE-TTSCEEEEECC
T ss_pred EEEe-CCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEEEEc-CCCeEEEEECC
Confidence 4432 235666666654332221 111234677777665556655555 45555444443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.015 Score=54.28 Aligned_cols=188 Identities=9% Similarity=-0.049 Sum_probs=110.4
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
+++....+.|+..++..... +..+. ....+..+++.+.++.++.+-...+.|...++.......... ..
T Consensus 154 l~sgs~dg~v~iwd~~~~~~-----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~-----~~ 223 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAV-----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID-----FC 223 (357)
T ss_dssp EEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC-----CT
T ss_pred EEEEeCCCeEEEEECCCCcE-----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee-----ec
Confidence 33333334588887765422 22222 244578899988777777777677888887775332211111 00
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
..-..+..+++.+..++++.+-...+.|...++........+........++++.|..+.+..+-. ....|...+++..
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~ 302 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFS 302 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSC
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCC
Confidence 122347788888777888877666778999998754433333333455689999987655444432 2456776676644
Q ss_pred CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 312 ~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
....... --...+++++.+.+++++.+-. ..++|..-++.
T Consensus 303 ~~~~~~~-H~~~V~~vafsP~d~~~l~s~s-~Dg~v~iW~~~ 342 (357)
T 4g56_B 303 EVFRDLS-HRDFVTGVAWSPLDHSKFTTVG-WDHKVLHHHLP 342 (357)
T ss_dssp EEEEECC-CSSCEEEEEECSSSTTEEEEEE-TTSCEEEEECC
T ss_pred cEeEECC-CCCCEEEEEEeCCCCCEEEEEc-CCCeEEEEECC
Confidence 3222211 1245678888765555555555 56666666654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.011 Score=63.65 Aligned_cols=171 Identities=10% Similarity=0.022 Sum_probs=110.5
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCC-ceEEEEEECCCCEEEEEEcCCCcEE-EEEcCCCCcEEEEeccc
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVS-LAAKVDFHAAEDYIYWVDIDHGTIS-RTHRDGTGRENIIEYVE 227 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~-~~~~l~~d~~~~~ly~sd~~~~~I~-~~~~~G~~~~~i~~~~~ 227 (377)
.|+++... .|..+++.+... . .+. ... .+..+++. .++.|+++.. ...|+ ..++++...+.+..
T Consensus 310 ~la~~~~~--~i~~~~~~~~~~----~--~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~~--- 376 (1045)
T 1k32_A 310 LIAFVSRG--QAFIQDVSGTYV----L--KVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFEE--- 376 (1045)
T ss_dssp CEEEEETT--EEEEECTTSSBE----E--ECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECCC---
T ss_pred EEEEEEcC--EEEEEcCCCCce----E--EccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEecC---
Confidence 35555543 377777665422 1 112 122 45566666 5566777664 56888 78887654333322
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC--------C
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG--------K 299 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g--------~ 299 (377)
....+..+++.+.++.|+++.. .+.|.+.++++.....+.........++++.|...+|.++... .
T Consensus 377 -----~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~ 450 (1045)
T 1k32_A 377 -----NLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 450 (1045)
T ss_dssp -----CCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred -----CccceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCC
Confidence 2345788999987777877654 4689999998776666664444445899999988888887542 1
Q ss_pred CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 300 ~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
...|+..++++.....+.. ....+..+++.+.+++|||...
T Consensus 451 ~~~i~l~d~~~g~~~~l~~-~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 451 MQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEES
T ss_pred CCeEEEEECCCCcEEEeeC-CCcccCCceEcCCCCEEEEEec
Confidence 2588888888755433332 2345677889888889998765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.021 Score=52.23 Aligned_cols=286 Identities=9% Similarity=0.007 Sum_probs=159.9
Q ss_pred cCCccccccCC---CCeEEEEeCCCCcEEEEEcC-Cc-EEEEEeC---CCCCceEEEEEE-C----CeEEEEcCCCCceE
Q psy5792 16 GAVASTLKPQS---GPFVYGVKTLSHSLHYVNIE-VK-VAKVVSM---PDAAQVVAAVFY-K----GRIIYSDANDGNIR 82 (377)
Q Consensus 16 ~~~~~~~~d~~---~~~ly~~d~~~~~I~~~~~d-G~-~~~i~~~---~~~~~p~~lav~-~----~~ly~td~~~~~I~ 82 (377)
..+.+++..+. +..++++-...+.|...++. +. .+.+... ........+++. + +.++++-..++.|.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 46778888873 44555566666789999988 44 5555311 133457888883 3 35666666778899
Q ss_pred EEc-CCCCceEEEecCCC-ceeEEeeec-CCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 83 SIN-LDGSNSTVLRNNAG-ISDFILFSV-NSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 83 ~~~-~~g~~~~~~~~~~~-p~~i~v~~~-~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
..+ .+++....+..... +..+.+ ++ +.. ++++....
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~~----------------------------------------~l~s~~~d 137 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKF-HPRDPN----------------------------------------LLLSVSKD 137 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEE-CSSCTT----------------------------------------EEEEEETT
T ss_pred EEEchhceEeeeecCCCCcEEEEEE-CCCCCC----------------------------------------EEEEEeCC
Confidence 998 66766666653333 555554 22 211 33333333
Q ss_pred CeEEEEEcCCCCceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecc------------
Q psy5792 160 YDIMGIKYNKNESKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYV------------ 226 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~------------ 226 (377)
|.|+..++..... ...+.. ......+..+++++.++.|+.+. ..+.|...++............
T Consensus 138 g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 138 HALRLWNIQTDTL--VAIFGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp SCEEEEETTTTEE--EEEECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred CeEEEEEeecCeE--EEEecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence 4588888875532 111100 12345688999998766666555 5678888887632110000000
Q ss_pred ---------ccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE--------------EEEeeCCCCCceeE
Q psy5792 227 ---------ETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR--------------YVLISGGVDQPSAL 283 (377)
Q Consensus 227 ---------~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~--------------~~l~~~~~~~P~~i 283 (377)
.......-..+..++++ ++++.+-...+.|.+.++..... .............+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred cceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence 00000022346677776 44666767778899988765321 11222233456778
Q ss_pred EEcCC--CCeEEEEecCCCCeEEEEecCCCCe----EEEEecC--CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEc
Q psy5792 284 AVDPE--SGYLFWSESGKIPLIARAGLDGKKQ----TILAQEI--IMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 284 avdp~--~g~lywtd~g~~~~I~r~~ldG~~~----~~l~~~~--~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~ 352 (377)
++.|. ..+|+... ..+.|...++..... ....... -.....+++.+.+..|..+. ..+.|...++
T Consensus 292 ~~s~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~ 364 (366)
T 3k26_A 292 RFSMDFWQKMLALGN--QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC--DDASIWRWDR 364 (366)
T ss_dssp CCEECTTSSEEEEEC--TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEEC
T ss_pred EEcCCCCCcEEEEEe--cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe--CCCEEEEEEe
Confidence 88876 55665554 346788888775431 1122221 24567888876555555444 4566655544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.011 Score=55.10 Aligned_cols=146 Identities=7% Similarity=0.051 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCc--EEEEEcCCCCcEEEEeccccCCCCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGT--ISRTHRDGTGRENIIEYVETGDPTPVDQ 236 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~--I~~~~~~G~~~~~i~~~~~~~~~~~~~~ 236 (377)
.|..+++++... ..+..-.....+..+++.+.++.|+++... ... |+.+++++...+.+.. .. .
T Consensus 217 ~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-------~~--~ 284 (396)
T 3c5m_A 217 RMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-------MP--P 284 (396)
T ss_dssp CCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-------CC--S
T ss_pred eEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-------CC--C
Confidence 478888776533 112110012246677888878877776432 224 8989887655444443 11 1
Q ss_pred cceEEEec-cCCeEEEEc---------------CCCCEEEEEEcCCCeEEEEeeCCCC----------CceeEEEcCCCC
Q psy5792 237 FTDIAVDW-IAQNIYWSD---------------PKENVIEVARLTGQYRYVLISGGVD----------QPSALAVDPESG 290 (377)
Q Consensus 237 p~~iavD~-~~~~lYwtd---------------~~~~~I~~~~~~g~~~~~l~~~~~~----------~P~~iavdp~~g 290 (377)
.. +++.+ .++.|+.+. .....|++.++++...+.+...... .+..+++.|...
T Consensus 285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 363 (396)
T 3c5m_A 285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD 363 (396)
T ss_dssp EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCC
Confidence 12 56665 444444432 1346899999987665555443211 245678888877
Q ss_pred eEEEEecC-CCCeEEEEecCCCCeEEEEec
Q psy5792 291 YLFWSESG-KIPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 291 ~lywtd~g-~~~~I~r~~ldG~~~~~l~~~ 319 (377)
+|+++... ....|+++++++...+++..+
T Consensus 364 ~l~~~s~~~~~~~l~~~~~~~~~~~~~~~~ 393 (396)
T 3c5m_A 364 GVLFTSDFEGVPAIYIADVPESYKHLEHHH 393 (396)
T ss_dssp EEEEEECTTSSCEEEEEECCTTCC------
T ss_pred eEEEEecCCCCceEEEEEEccccccccccc
Confidence 88887642 357899999998887776553
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.77 E-value=0.023 Score=52.17 Aligned_cols=189 Identities=10% Similarity=-0.007 Sum_probs=106.8
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++.+. ..+.|+..++..... ............+..+++.+.+..|+... ..+.|...+++......+......
T Consensus 67 l~~~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~--- 139 (372)
T 1k8k_C 67 IVTCG-TDRNAYVWTLKGRTW--KPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKK--- 139 (372)
T ss_dssp EEEEE-TTSCEEEEEEETTEE--EEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECT---
T ss_pred EEEEc-CCCeEEEEECCCCee--eeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeec---
Confidence 44333 334587777765432 11222123345688999998777777666 457777777765432111110000
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-------------------CCeEEEEeeCCCCCceeEEEcCCCCeE
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-------------------GQYRYVLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-------------------g~~~~~l~~~~~~~P~~iavdp~~g~l 292 (377)
.....+.++++.+. ++++++-...+.|.+.++. +..... +........+++++|...+|
T Consensus 140 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 140 PIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp TCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSSSEE
T ss_pred ccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCCCEE
Confidence 22345888999874 4455555556788888853 232222 22334567899999976677
Q ss_pred EEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 293 ywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
+.+.. ...|...++........+...-..+..+++.+.+..|... ..+.|...++..
T Consensus 218 ~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~~ 274 (372)
T 1k8k_C 218 AWVSH--DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG---HDCFPVLFTYDS 274 (372)
T ss_dssp EEEET--TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE---TTSSCEEEEEET
T ss_pred EEEeC--CCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE---eCCeEEEEEccC
Confidence 66653 4678888886444333333323456889998654433333 345555555543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0033 Score=62.75 Aligned_cols=150 Identities=9% Similarity=-0.050 Sum_probs=95.5
Q ss_pred EEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC---CCEEEEEEcC
Q psy5792 189 KVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK---ENVIEVARLT 265 (377)
Q Consensus 189 ~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~---~~~I~~~~~~ 265 (377)
..++.+..+.++++....+.+...++++...+.+.. ... ..+++++.++.|+++... ...|++.+++
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-------~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~ 183 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-------LPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS 183 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-------ESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-------CCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC
Confidence 344555466665555455555566777665555544 111 778898888888866432 2579999998
Q ss_pred CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE--------EeCCCCEEE
Q psy5792 266 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT--------LDRKNKRVY 337 (377)
Q Consensus 266 g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla--------lD~~~~~LY 337 (377)
+...+.+... ......++..|....|+.++......|++.++++...+ ++...-..+.+++ +++.+ ++|
T Consensus 184 ~g~~~~l~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 184 SGGLRVFDSG-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp TCCCEEECCS-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred CCCceEeecC-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 7766666443 44568999999888888555432348999999987776 4443222333444 77655 777
Q ss_pred EEEeCCCCeEEEEEc
Q psy5792 338 WCYSVGSNVLESMDY 352 (377)
Q Consensus 338 w~d~~~~~~i~~~~~ 352 (377)
++-. ..+++....+
T Consensus 261 ~~~~-~~g~~~l~~~ 274 (582)
T 3o4h_A 261 VVAR-REGRSAVFID 274 (582)
T ss_dssp EEEE-ETTEEEEEET
T ss_pred EEEE-cCCcEEEEEE
Confidence 7766 5566655555
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.025 Score=51.65 Aligned_cols=241 Identities=12% Similarity=0.107 Sum_probs=142.8
Q ss_pred cCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcC
Q psy5792 45 IEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYN 120 (377)
Q Consensus 45 ~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~ 120 (377)
..|. .+.+....+-.....|++ .++.+.++-..++.|...+ .+++....+..... +.++.+ +++..
T Consensus 18 ~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~--------- 87 (369)
T 3zwl_B 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCFTK--------- 87 (369)
T ss_dssp SSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEE-CTTSS---------
T ss_pred EeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEE-cCCCC---------
Confidence 4555 333321245556777888 3344444444567888888 66766666653333 445543 22211
Q ss_pred CCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEE
Q psy5792 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIY 200 (377)
Q Consensus 121 ~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly 200 (377)
+|+.+ ...+.|+..++..... +..+.....+..+++.+.+..++
T Consensus 88 ------------------------------~l~s~-~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~ 131 (369)
T 3zwl_B 88 ------------------------------YCVTG-SADYSIKLWDVSNGQC-----VATWKSPVPVKRVEFSPCGNYFL 131 (369)
T ss_dssp ------------------------------EEEEE-ETTTEEEEEETTTCCE-----EEEEECSSCEEEEEECTTSSEEE
T ss_pred ------------------------------EEEEE-eCCCeEEEEECCCCcE-----EEEeecCCCeEEEEEccCCCEEE
Confidence 33333 3344688888876543 12222445688999999777777
Q ss_pred EEEcC----CCcEEEEEcCCCC------------cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 201 WVDID----HGTISRTHRDGTG------------RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 201 ~sd~~----~~~I~~~~~~G~~------------~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
.+... .+.|...++.... ...+.. ......+..+++.+.+..|+ +-...+.|.+.++
T Consensus 132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~ 204 (369)
T 3zwl_B 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT------HEGLDAATVAGWSTKGKYII-AGHKDGKISKYDV 204 (369)
T ss_dssp EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC------CTTCCCEEEEEECGGGCEEE-EEETTSEEEEEET
T ss_pred EecCCccCCCCEEEEEEecCCccceeecccccceeeeccC------CcCccceeEEEEcCCCCEEE-EEcCCCEEEEEEC
Confidence 66532 2677766664321 111111 01122678888987655555 4445589999999
Q ss_pred CC-CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 265 TG-QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 265 ~g-~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
.. ......+........+++++|...+|+.+.. ...|...++........... -.....+++.+.+..|+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR--DTNSFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGGG 279 (369)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEEC
T ss_pred CCCcEeEEEEecCCCceeEEEECCCCCEEEEecC--CceEEEEECCCCceeeeecC-CCCceeEEecCCCceEEEeec
Confidence 87 3433344444566799999997666666653 46888888875544444443 356778888887777777665
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.026 Score=51.70 Aligned_cols=222 Identities=10% Similarity=0.077 Sum_probs=128.9
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.++++.+... +..+-+..+.|...|+... ...+. ........+++ .++....+-...+.|...+ .+++...
T Consensus 82 ~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 82 GVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSID--AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp CEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEE--CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred CEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEe--CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence 455566665543 4445556778888887655 55553 33344566777 3445555555667777777 5555544
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.+..... +..+++ +++. .+|+.+. ..+.|+..++....
T Consensus 159 ~~~~~~~~v~~~~~-spdg---------------------------------------~~lasg~-~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 159 SLDTRGKFILSIAY-SPDG---------------------------------------KYLASGA-IDGIINIFDIATGK 197 (321)
T ss_dssp EEECSSSCEEEEEE-CTTS---------------------------------------SEEEEEE-TTSCEEEEETTTTE
T ss_pred EecCCCceEEEEEE-CCCC---------------------------------------CEEEEEc-CCCeEEEEECCCCc
Confidence 4433222 333332 2221 1343333 33458888876542
Q ss_pred ceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 172 SKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
. +..+.. ...+..+++.+.+..|. +-...+.|...++.......... .....+..+++.+.+. ..
T Consensus 198 ~-----~~~~~~h~~~v~~l~~spd~~~l~-s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~sp~~~-~l 263 (321)
T 3ow8_A 198 L-----LHTLEGHAMPIRSLTFSPDSQLLV-TASDDGYIKIYDVQHANLAGTLS-------GHASWVLNVAFCPDDT-HF 263 (321)
T ss_dssp E-----EEEECCCSSCCCEEEECTTSCEEE-EECTTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSS-EE
T ss_pred E-----EEEEcccCCceeEEEEcCCCCEEE-EEcCCCeEEEEECCCcceeEEEc-------CCCCceEEEEECCCCC-EE
Confidence 2 222232 33467899998655554 44467888888887544333333 2344578899987544 45
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
.+-...++|.+-++....+...+........++++.|...+|.-+.
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 5666667899999876654433433455678999998655555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.067 Score=55.05 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=143.7
Q ss_pred CCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceecccc
Q psy5792 57 DAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGP 132 (377)
Q Consensus 57 ~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~ 132 (377)
......++++ .+..|..+. .++.|...+ .+|+....+..... +.++.+ +++.+
T Consensus 12 h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~--------------------- 68 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKF-IARKN--------------------- 68 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGT---------------------
T ss_pred CCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEE-eCCCC---------------------
Confidence 3445677777 334454443 456788888 66666555553333 444443 33322
Q ss_pred CCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 133 LSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 133 ~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
.|+.+.. .|.|+..++..... ...+ ......+..+++.+.+..|..+. ..+.|...
T Consensus 69 ------------------~l~~~~~-dg~i~vw~~~~~~~--~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw 124 (814)
T 3mkq_A 69 ------------------WIIVGSD-DFRIRVFNYNTGEK--VVDF--EAHPDYIRSIAVHPTKPYVLSGS-DDLTVKLW 124 (814)
T ss_dssp ------------------EEEEEET-TSEEEEEETTTCCE--EEEE--ECCSSCEEEEEECSSSSEEEEEE-TTSEEEEE
T ss_pred ------------------EEEEEeC-CCeEEEEECCCCcE--EEEE--ecCCCCEEEEEEeCCCCEEEEEc-CCCEEEEE
Confidence 3444433 44688888765533 1111 12345588999998777777655 56888888
Q ss_pred EcCCC-CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE-EEEeeCCCCCceeEEEcC--C
Q psy5792 213 HRDGT-GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR-YVLISGGVDQPSALAVDP--E 288 (377)
Q Consensus 213 ~~~G~-~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp--~ 288 (377)
+++.. ....... ..-..+..+++.+..++++++-...+.|.+.++..... ..+..........++..| .
T Consensus 125 ~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 125 NWENNWALEQTFE-------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp EGGGTSEEEEEEE-------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT
T ss_pred ECCCCceEEEEEc-------CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC
Confidence 88754 2223333 23345788898874566777767778999999876543 333333335678889987 5
Q ss_pred CCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 289 SGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 289 ~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
...|+.... ...|...++..................+++.+.+..|+ +-. ..+.|...+...+
T Consensus 198 ~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 198 KPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGS-EDGTLKIWNSSTY 260 (814)
T ss_dssp CCEEEEECT--TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE-EEE-TTSCEEEEETTTC
T ss_pred CCEEEEEeC--CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEe-CCCeEEEEECCCC
Confidence 556665543 46788877765443333333235567888876555444 444 4567777777644
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.034 Score=50.74 Aligned_cols=275 Identities=12% Similarity=0.042 Sum_probs=156.1
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-------EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-------VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-------~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~ 86 (377)
+.+.++++.+.++.+..+-+..+.|..-++.+. .+++. .+......+++ .++....+-..++.|...+ .
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 356778887766677777777788887776532 22332 34445677787 4455555656678888888 6
Q ss_pred CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 87 ~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+|+....+..... +..+.+ +++. .++++....+.|+..
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~-~~~~----------------------------------------~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDI-DKKA----------------------------------------SMIISGSRDKTIKVW 134 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEE-CTTS----------------------------------------CEEEEEETTSCEEEE
T ss_pred CCCeeEEEccCCCcEEEEEE-cCCC----------------------------------------CEEEEEeCCCeEEEE
Confidence 6766555543333 444443 2221 133444333457777
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCC-----CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceE
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAE-----DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~-----~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
++.+... .........+..+.+.+.. +.++++-...+.|...++.......... .....+..+
T Consensus 135 d~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~ 202 (319)
T 3frx_A 135 TIKGQCL-----ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-------GHNSNINTL 202 (319)
T ss_dssp ETTSCEE-----EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-------CCCSCEEEE
T ss_pred ECCCCeE-----EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-------CCCCcEEEE
Confidence 7765421 1111223345566665532 2345555567888888887533333232 234458889
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI 320 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~ 320 (377)
++.+. +.+..+-...+.|.+-++........+.. ......+++.|...+|..+.. ..|...+++...........
T Consensus 203 ~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~---~~i~v~~~~~~~~~~~~~~~ 277 (319)
T 3frx_A 203 TASPD-GTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA---TGIKVFSLDPQYLVDDLRPE 277 (319)
T ss_dssp EECTT-SSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET---TEEEEEEETTEEEEEEECCC
T ss_pred EEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC---CCcEEEEeCcCeeeeccCcc
Confidence 99874 55556666678999999987655444443 356789999997666655542 34655666543322222111
Q ss_pred --------CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEc
Q psy5792 321 --------IMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 321 --------~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~ 352 (377)
-.....+++.+.++.|+-.. ..+.|..-++
T Consensus 278 ~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd~ 315 (319)
T 3frx_A 278 FAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQV 315 (319)
T ss_dssp CTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEEE
T ss_pred ccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEEE
Confidence 12345678876655555443 4455544443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.017 Score=54.10 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=138.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCC----c--EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV----K--VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG----~--~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~ 86 (377)
..+.+++..+.+..|+.. ...+.|...+++. . ...+. ........+++. ++.++++-..++.|...+ .
T Consensus 68 ~~v~~~~~s~~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGA-LDNGSLELYSTNEANNAINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SCEEEEEECSSSSCEEEE-ESSSCEEEECCSSTTSCCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred CceEEEEECCCCCeEEEE-ccCCeEEEeecccccccccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 356788888776666444 4467899988876 2 33332 344566788883 256666666677788777 4
Q ss_pred CCC------ceEEEe---cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe
Q psy5792 87 DGS------NSTVLR---NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156 (377)
Q Consensus 87 ~g~------~~~~~~---~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~ 156 (377)
+++ ....+. .... +..+.+ +++ ...++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~---------------------------------------~~~~l~~~ 184 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAW-NQS---------------------------------------LAHVFASA 184 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEE-CSS---------------------------------------CTTEEEEE
T ss_pred CCccccccccccccccccCCCCCeeEEEe-CCC---------------------------------------CCcEEEEE
Confidence 443 111110 0000 112211 110 02245554
Q ss_pred CCCCeEEEEEcCCCCceeeEEEEecCC-----CCceEEEEEECCCCEEEEEEcCCC---cEEEEEcCCCC--cEEEEecc
Q psy5792 157 NSGYDIMGIKYNKNESKVTQVLGPLSK-----VSLAAKVDFHAAEDYIYWVDIDHG---TISRTHRDGTG--RENIIEYV 226 (377)
Q Consensus 157 ~~~~~I~~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~d~~~~~ly~sd~~~~---~I~~~~~~G~~--~~~i~~~~ 226 (377)
...+.|+..++..... ........ ...+..+++.+.+..++++-...+ .|...++.... ...+..
T Consensus 185 ~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-- 259 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKE---VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ-- 259 (416)
T ss_dssp SSSSCEEEEETTTTEE---EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--
T ss_pred cCCCCEEEEECCCCCc---ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--
Confidence 4555688888876532 11111111 456889999987655555554555 88888886432 111110
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
.....+.++++.+..++++.+-...++|.+.++........+........++++.|....++.+-. ....|...
T Consensus 260 -----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~d~~i~iw 333 (416)
T 2pm9_A 260 -----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS-FDNKIEVQ 333 (416)
T ss_dssp -----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC-SSSEEEEE
T ss_pred -----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe-cCCcEEEE
Confidence 122357888888745666667666789999998765443334444556789999996635555543 24667666
Q ss_pred ecCC
Q psy5792 307 GLDG 310 (377)
Q Consensus 307 ~ldG 310 (377)
++..
T Consensus 334 ~~~~ 337 (416)
T 2pm9_A 334 TLQN 337 (416)
T ss_dssp ESCC
T ss_pred EccC
Confidence 6654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.086 Score=53.88 Aligned_cols=182 Identities=10% Similarity=0.086 Sum_probs=109.3
Q ss_pred EEEEEcCCCCceeeEEE-EecCC-CCceEEEEEECCCCEEEEEEc-C---CCcEEEEEcCC------C--CcEEEEeccc
Q psy5792 162 IMGIKYNKNESKVTQVL-GPLSK-VSLAAKVDFHAAEDYIYWVDI-D---HGTISRTHRDG------T--GRENIIEYVE 227 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~-~~~~~-~~~~~~l~~d~~~~~ly~sd~-~---~~~I~~~~~~G------~--~~~~i~~~~~ 227 (377)
|+..++.+... ...+ ..... .....++++.+.+++|+++.. . ...|+.+++++ . ..+.+..
T Consensus 210 v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~--- 284 (710)
T 2xdw_A 210 LYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID--- 284 (710)
T ss_dssp EEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC---
T ss_pred EEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC---
Confidence 77777765432 1122 22111 223678888888888888754 2 46899999874 2 2344443
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCC---CCEEEEEEcCCCe---EEEEeeCCC-CCceeEEEcCCCCeEEEEecC-C
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPK---ENVIEVARLTGQY---RYVLISGGV-DQPSALAVDPESGYLFWSESG-K 299 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~---~~~I~~~~~~g~~---~~~l~~~~~-~~P~~iavdp~~g~lywtd~g-~ 299 (377)
...... -.+++.++.||+.... +.+|.+.++++.. .+.++...- ....++++.+ +++|+++-.. .
T Consensus 285 -----~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g 357 (710)
T 2xdw_A 285 -----NFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDV 357 (710)
T ss_dssp -----SSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETT
T ss_pred -----CCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECC
Confidence 222222 2455557888887432 4589999998753 245554322 2456777764 6777776532 2
Q ss_pred CCeEEEEec-CCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe--CCCCeEEEEEccCCc
Q psy5792 300 IPLIARAGL-DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS--VGSNVLESMDYSGGS 356 (377)
Q Consensus 300 ~~~I~r~~l-dG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~--~~~~~i~~~~~~G~~ 356 (377)
..+|+..++ +|...+.+... .....+++.++.+.+|+++-. ....+|+.+++..+.
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 457888898 66644444322 344566777766678887644 145789999987655
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.053 Score=50.90 Aligned_cols=261 Identities=9% Similarity=-0.021 Sum_probs=150.4
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc-EE--EEE-eCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CCC--
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VA--KVV-SMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LDG-- 88 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~--~i~-~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~g-- 88 (377)
+..++.++....+.+.-+..+.|...+++.. .. .+. ...+.....++++. ++.++++-..++.|...+ .++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3445555554445445567889999998654 21 110 01344557888883 566666666678888888 444
Q ss_pred -----CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeE
Q psy5792 89 -----SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDI 162 (377)
Q Consensus 89 -----~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I 162 (377)
+....+..... +..+.+ +++. ..++++....+.|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~-~p~~---------------------------------------~~~l~s~~~dg~i 156 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAW-HPTA---------------------------------------QNVLLSAGCDNVI 156 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEE-CSSB---------------------------------------TTEEEEEETTSCE
T ss_pred ccccCCceEEecCCCCeEEEEEE-CcCC---------------------------------------CCEEEEEcCCCEE
Confidence 22333332222 334433 2221 1244444444468
Q ss_pred EEEEcCCCCceeeEEEEec---CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEE-eccccCCCCCCCCcc
Q psy5792 163 MGIKYNKNESKVTQVLGPL---SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENII-EYVETGDPTPVDQFT 238 (377)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~-~~~~~~~~~~~~~p~ 238 (377)
+..++..... +..+ .....+..+++.+.+..|+.+. ..+.|...++......... .. ..-..+.
T Consensus 157 ~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~ 224 (402)
T 2aq5_A 157 LVWDVGTGAA-----VLTLGPDVHPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRKGTVVAEKDRP------HEGTRPV 224 (402)
T ss_dssp EEEETTTTEE-----EEEECTTTCCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTTTEEEEEEECS------SCSSSCC
T ss_pred EEEECCCCCc-----cEEEecCCCCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCCCceeeeeccC------CCCCcce
Confidence 8888876522 2222 2345688999998666666554 5688999998743322222 20 1122367
Q ss_pred eEEEeccCCeEEEEc---CCCCEEEEEEcCCCeE--EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-
Q psy5792 239 DIAVDWIAQNIYWSD---PKENVIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK- 312 (377)
Q Consensus 239 ~iavD~~~~~lYwtd---~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~- 312 (377)
.+++.+. +.++.+- ...+.|.+.++..... ..........+..++++|.+.+||.+-.. ...|...++....
T Consensus 225 ~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~-dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 225 HAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG-DSSIRYFEITSEAP 302 (402)
T ss_dssp EEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT-CSCEEEEEECSSTT
T ss_pred EEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC-CCeEEEEEecCCCc
Confidence 8888864 5555554 5678899999876432 22221234567899999988899888643 4677777776544
Q ss_pred -eEEEEec-CCCCceEEEEeCC
Q psy5792 313 -QTILAQE-IIMPIKDITLDRK 332 (377)
Q Consensus 313 -~~~l~~~-~~~~P~glalD~~ 332 (377)
...+..- .-....++++.+.
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~ 324 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPK 324 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCG
T ss_pred ceEeecccccCCcccceEEecc
Confidence 3333321 1245677887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.042 Score=56.16 Aligned_cols=186 Identities=10% Similarity=0.072 Sum_probs=104.5
Q ss_pred EEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCC---CcEEEEEcCCCCcEEEEeccccCCCCCCCCc
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDH---GTISRTHRDGTGRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~---~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p 237 (377)
|+..++.+...+ ...+..... .....++.+.+.+++|+++.... ..|+.++..+...+.+.. .....
T Consensus 204 v~~~~l~t~~~~-~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--------~~~~~ 274 (695)
T 2bkl_A 204 IRYHTLGTEPSK-DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK--------GVGAK 274 (695)
T ss_dssp EEEEETTSCGGG-CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--------CSSCC
T ss_pred EEEEECCCCchh-ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--------CCCce
Confidence 777787765320 012222212 13467888888888888765433 377777665445555554 22222
Q ss_pred ceEEEeccCCeEEEEcC---CCCEEEEEEcCCCe---EEEEeeCC-CCCceeEEEcCCCCeEEEEecC-CCCeEEEEecC
Q psy5792 238 TDIAVDWIAQNIYWSDP---KENVIEVARLTGQY---RYVLISGG-VDQPSALAVDPESGYLFWSESG-KIPLIARAGLD 309 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~---~~~~I~~~~~~g~~---~~~l~~~~-~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ld 309 (377)
...+. +.++ ||+... .+.+|.+.++++.. .+.++... .....++++. ++.|+++... ...+|+..+++
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCC
Confidence 22222 3345 776533 35799999997654 24555432 2335677776 6777777532 24688888888
Q ss_pred CCCeEEEEecCCCCceEEEEeCCCCEEEEEEe--CCCCeEEEEEccCCceEEE
Q psy5792 310 GKKQTILAQEIIMPIKDITLDRKNKRVYWCYS--VGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 310 G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~--~~~~~i~~~~~~G~~~~~~ 360 (377)
|...+.+.........+++.++.++.|+++-. ....+|+..++.++..+.+
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 76444432211223344555555567776544 0235788888886654443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.18 Score=54.70 Aligned_cols=285 Identities=9% Similarity=0.068 Sum_probs=167.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.++++.+.+.+|... +..+.|...+.... ..++. .......++++ .++....+-..++.|...+ .+|+..
T Consensus 616 ~~v~~~~~s~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASC-GADKTLQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 467788888877666444 46688999998666 55553 45566788888 3444444545667888888 677666
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+.+ +++. +..++++....+.|+..++...
T Consensus 693 ~~~~~~~~~v~~~~~-~~~~--------------------------------------~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHF-TNKS--------------------------------------NHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp EEEECCSSCEEEEEE-CSSS--------------------------------------SCCEEEEEETTSCEEEEETTSS
T ss_pred EEEcCCCCcEEEEEE-ecCC--------------------------------------CceEEEEEeCCCeEEEEECCCc
Confidence 66654333 344433 2211 1234444444456888887765
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc------CCCCCCCCcceEEEec
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET------GDPTPVDQFTDIAVDW 244 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~------~~~~~~~~p~~iavD~ 244 (377)
.. ... .......+.++++.+.+..|.... ..+.|...++.............. ........+..+++.+
T Consensus 734 ~~--~~~--~~~h~~~v~~~~~sp~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 734 EC--RNT--MFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp SE--EEE--ECCCSSCEEEEEECSSTTEEEEEE-SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred ch--hhe--ecCCCCCEEEEEEecCCCEEEEEE-CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 33 111 112344578899998666655544 567888888764322211110000 0000111366778887
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEE-EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRY-VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP 323 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~ 323 (377)
.+..+..+. .+.|...++...... .+..........+++.|....+..+.. ...|...+++..............
T Consensus 809 dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 809 DGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS--QYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp TSSEEEEEE--TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS--SSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCEEEEEc--CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCceeeecCCCccc
Confidence 666666654 467888888765433 333344566789999997776666653 467777777755443333333456
Q ss_pred ceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 324 IKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..++++.+.+..|+.+ . ..+.|...+..
T Consensus 885 v~~v~~spdg~~l~s~-s-~dg~v~vw~~~ 912 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTA-S-DDQTIRVWETK 912 (1249)
T ss_dssp EEEEEECTTSSEEEEE-E-TTSCEEEEEHH
T ss_pred eEEEEECCCCCEEEEE-e-CCCeEEEEEcc
Confidence 7889998765555544 4 45566555543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.061 Score=48.71 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=133.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-----EEEEEeCCCCCceEEEEE-ECCe-EEEEcCCCCceEEEcC-
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-----VAKVVSMPDAAQVVAAVF-YKGR-IIYSDANDGNIRSINL- 86 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-----~~~i~~~~~~~~p~~lav-~~~~-ly~td~~~~~I~~~~~- 86 (377)
-+.+.+++..+.+..|+.. +..+.|...+++.. ...+. ........+++ .++. .+++-..++.|...+.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCcEEEEEEcCCCCEEEEE-cCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3567788888876666444 45677888776543 22222 34456778888 3455 4444445678888886
Q ss_pred CCCceEEEec--CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 87 DGSNSTVLRN--NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 87 ~g~~~~~~~~--~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
.......+.. ... +..+.+. + . ..++.+. ..+.|+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~l~~~-~-~---------------------------------------~~l~s~~-~d~~i~ 125 (342)
T 1yfq_A 88 GSPSFQALTNNEANLGICRICKY-G-D---------------------------------------DKLIAAS-WDGLIE 125 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEE-T-T---------------------------------------TEEEEEE-TTSEEE
T ss_pred cCCceEeccccCCCCceEEEEeC-C-C---------------------------------------CEEEEEc-CCCeEE
Confidence 6555544443 222 4444432 1 1 1233333 334577
Q ss_pred EEEcCC---------CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC-CC--cEEEEeccccCCC
Q psy5792 164 GIKYNK---------NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG-TG--RENIIEYVETGDP 231 (377)
Q Consensus 164 ~~~l~~---------~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G-~~--~~~i~~~~~~~~~ 231 (377)
..++.. ... +..+.....+.++++++. .++.. ...+.|...++.. .. ......
T Consensus 126 iwd~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~--~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~------- 190 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLN-----SNNTKVKNKIFTMDTNSS--RLIVG-MNNSQVQWFRLPLCEDDNGTIEES------- 190 (342)
T ss_dssp EECHHHHTTBCEEEEESC-----SSSSSSCCCEEEEEECSS--EEEEE-ESTTEEEEEESSCCTTCCCEEEEC-------
T ss_pred EEcccccccccccccCCe-----eeEEeeCCceEEEEecCC--cEEEE-eCCCeEEEEECCccccccceeeec-------
Confidence 776643 211 111223345788888753 35544 4567888888875 22 222222
Q ss_pred CCCCCcceEEEec-cCCeEEEEcCCCCEEEEEEcCCC------eEEEEeeCCC---------CCceeEEEcCCCCeEEEE
Q psy5792 232 TPVDQFTDIAVDW-IAQNIYWSDPKENVIEVARLTGQ------YRYVLISGGV---------DQPSALAVDPESGYLFWS 295 (377)
Q Consensus 232 ~~~~~p~~iavD~-~~~~lYwtd~~~~~I~~~~~~g~------~~~~l~~~~~---------~~P~~iavdp~~g~lywt 295 (377)
..-..+..+++.+ .+ +++++-...+.|.+.+++.. .....+.... .....++++|...+|+..
T Consensus 191 ~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp SCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred CCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 2233578888886 44 45555555778888776654 2222233222 267899999976677666
Q ss_pred ecCCCCeEEEEecCCC
Q psy5792 296 ESGKIPLIARAGLDGK 311 (377)
Q Consensus 296 d~g~~~~I~r~~ldG~ 311 (377)
.. ...|...++...
T Consensus 270 ~~--dg~i~vwd~~~~ 283 (342)
T 1yfq_A 270 GS--DGIISCWNLQTR 283 (342)
T ss_dssp ET--TSCEEEEETTTT
T ss_pred cC--CceEEEEcCccH
Confidence 53 467877777643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.073 Score=49.36 Aligned_cols=283 Identities=10% Similarity=0.003 Sum_probs=152.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEEEC--CeEEEEcCCCCceEEEcCCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVFYK--GRIIYSDANDGNIRSINLDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~g~~~ 91 (377)
..+.+++..+.+++++.+-+..+.|...++++. ...... ........++++.. +.++++-..++.|...+..+...
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 467788888887456666667889999999877 444432 13455678888854 35556656677888888555554
Q ss_pred EEEecCC---C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 92 TVLRNNA---G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 92 ~~~~~~~---~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
..+.... . +..+.+ +++. .+++.+. ..+.|+..++
T Consensus 154 ~~~~~~~~~~~~v~~~~~-~~~~---------------------------------------~~l~~~~-~d~~i~i~d~ 192 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDV-SVSR---------------------------------------QMLATGD-STGRLLLLGL 192 (383)
T ss_dssp EEEECCCCSSCCEEEEEE-ETTT---------------------------------------TEEEEEE-TTSEEEEEET
T ss_pred EEEeccCCCCCCeEEEEE-CCCC---------------------------------------CEEEEEC-CCCCEEEEEC
Confidence 4443221 1 333332 2221 2344433 3346888888
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
.+... .. .......+.++++.+.+..++++-...+.|...++.... .+.+... .....+.++++++.
T Consensus 193 ~~~~~---~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~s~~ 261 (383)
T 3ei3_B 193 DGHEI---FK--EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM------PHEKPVNAAYFNPT 261 (383)
T ss_dssp TSCEE---EE--EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE------ECSSCEEEEEECTT
T ss_pred CCCEE---EE--eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe------cCCCceEEEEEcCC
Confidence 54322 11 112345688999998776456665567888888886311 1121110 12346889999973
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCC-----CCCceeEEEcCCCCeEEEEe-------cCCCCeEEEEecCCCC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQY-RYVLISGG-----VDQPSALAVDPESGYLFWSE-------SGKIPLIARAGLDGKK 312 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~-----~~~P~~iavdp~~g~lywtd-------~g~~~~I~r~~ldG~~ 312 (377)
.+.++++-...++|.+.++.... ...+.... ...+...+.+|....+..+- .+....|...++....
T Consensus 262 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGG 341 (383)
T ss_dssp TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCC
T ss_pred CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCc
Confidence 44455555566899999987532 22332210 11122223333222222221 1124667777765333
Q ss_pred -eEEEEecC-CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 313 -QTILAQEI-IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 313 -~~~l~~~~-~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
...+.... -.....+++.+.+..|..+ . .+.|..-+++
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d~~i~iw~~~ 381 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASG-M--GFNILIWNRE 381 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEE-E--TTEEEEEECC
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEe-c--CCcEEEEecC
Confidence 33332211 1234455777655555444 3 2455554443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.44 E-value=0.11 Score=53.32 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=92.9
Q ss_pred eEEEEEECCCCEE-EEEEcCCC--cEEEEEcCCCC-------cEEEEeccccCCCCCCC--CcceEEEeccCCeEE-EEc
Q psy5792 187 AAKVDFHAAEDYI-YWVDIDHG--TISRTHRDGTG-------RENIIEYVETGDPTPVD--QFTDIAVDWIAQNIY-WSD 253 (377)
Q Consensus 187 ~~~l~~d~~~~~l-y~sd~~~~--~I~~~~~~G~~-------~~~i~~~~~~~~~~~~~--~p~~iavD~~~~~lY-wtd 253 (377)
...+++.+.++.+ ++.+...+ .|+.+++++.. ...+.. ......+. .+...++.+.++.|+ |..
T Consensus 262 ~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~---~~~~~~v~~~~~~~p~fspDG~~l~~~~s 338 (740)
T 4a5s_A 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE---MSTTGWVGRFRPSEPHFTLDGNSFYKIIS 338 (740)
T ss_dssp EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE---ECSSSCSSSSSCCCCEECTTSSEEEEEEE
T ss_pred EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee---ccCCceEccCcCCCceEcCCCCEEEEEEE
Confidence 5566777655533 34444332 68888877544 222221 00001111 134667777666665 653
Q ss_pred C--CCCEEEEEEcCCCeEEEEeeCCCCCcee-EEEcCCCCeEEEEecC-----CCCeEEEEecCCCCeEEEEecCC----
Q psy5792 254 P--KENVIEVARLTGQYRYVLISGGVDQPSA-LAVDPESGYLFWSESG-----KIPLIARAGLDGKKQTILAQEII---- 321 (377)
Q Consensus 254 ~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~-iavdp~~g~lywtd~g-----~~~~I~r~~ldG~~~~~l~~~~~---- 321 (377)
. +...|+..+++|...+.|..... .... ...| ++.||++... ....|++++++|...+..++..+
T Consensus 339 ~~~G~~~l~~~~~~~~~~~~lT~g~~-~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~ 415 (740)
T 4a5s_A 339 NEEGYRHICYFQIDKKDCTFITKGTW-EVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPER 415 (740)
T ss_dssp CTTSCEEEEEEETTCSSCEESCCSSS-CEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTT
T ss_pred cCCCceEEEEEECCCCceEecccCCE-EEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCC
Confidence 2 34589999999987766665432 2333 3355 7899998753 13689999999876654444221
Q ss_pred CCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEE
Q psy5792 322 MPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~ 360 (377)
......++.+..+.+...-.. ....+..++.+++....+
T Consensus 416 ~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~ 455 (740)
T 4a5s_A 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (740)
T ss_dssp BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence 234456776655554444330 223566666664433333
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.44 E-value=0.071 Score=48.98 Aligned_cols=276 Identities=8% Similarity=0.018 Sum_probs=146.8
Q ss_pred CCccccc-----cCCCCeEEEEeCCCCcEEEEEcCC--------c-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCce
Q psy5792 17 AVASTLK-----PQSGPFVYGVKTLSHSLHYVNIEV--------K-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNI 81 (377)
Q Consensus 17 ~~~~~~~-----d~~~~~ly~~d~~~~~I~~~~~dG--------~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I 81 (377)
.+.+++. .+.++.+..+-+..+.|..-++.. . ..++. ........+++ .++.+.++-..++.|
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~~~~l~s~s~D~~v 100 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFVSDLALSQENCFAISSSWDKTL 100 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCEEEEEECSSTTEEEEEETTSEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 3455655 332445556666677788877642 2 33332 44445677888 445566666677888
Q ss_pred EEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 82 RSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 82 ~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
...+ .+|+....+..... +..+.+ +++.. .| ++....
T Consensus 101 ~lwd~~~~~~~~~~~~h~~~v~~v~~-sp~~~---------------------------------------~l-~s~~~d 139 (343)
T 2xzm_R 101 RLWDLRTGTTYKRFVGHQSEVYSVAF-SPDNR---------------------------------------QI-LSAGAE 139 (343)
T ss_dssp EEEETTSSCEEEEEECCCSCEEEEEE-CSSTT---------------------------------------EE-EEEETT
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEE-CCCCC---------------------------------------EE-EEEcCC
Confidence 8888 66766655554333 555554 33222 23 333333
Q ss_pred CeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCC---------EEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAED---------YIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~---------~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
+.|+..++.+... ...... .....+..+++.+... .++.+-...+.|...+.++.....+ .
T Consensus 140 ~~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~----- 210 (343)
T 2xzm_R 140 REIKLWNILGECK---FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF-K----- 210 (343)
T ss_dssp SCEEEEESSSCEE---EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE-E-----
T ss_pred CEEEEEeccCCce---eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE-c-----
Confidence 4577777764311 000000 1223366777766431 3444444667888777554222222 2
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
..-..+..+++.+. +.+..+-...++|...++. .......... ......++++|....|.... ...|...++
T Consensus 211 --~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~~la~~~---d~~v~iw~~ 283 (343)
T 2xzm_R 211 --AHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAVGT---DQGVKIFNL 283 (343)
T ss_dssp --CCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSCEEEEEECSSSCEEEEEE---SSCEEEEES
T ss_pred --CccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcccceeecC-CCcEEEEEECCCCCEEEEEC---CCCEEEEEe
Confidence 23345888999874 4555666667889998883 3322222222 23478999999655554333 234555555
Q ss_pred CCCCe-E--EEEe----------cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 309 DGKKQ-T--ILAQ----------EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 309 dG~~~-~--~l~~----------~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..... . .+.. ........+++++.+..|+... ..+.|...+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~Dg~v~~w~~~ 339 (343)
T 2xzm_R 284 MTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF--TDGVIRTFSFE 339 (343)
T ss_dssp SSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE--TTSEEEEEEEE
T ss_pred CCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec--CCceEEEEEEE
Confidence 43221 1 1110 0012346788876655555443 45666555443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.081 Score=49.56 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=152.4
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
+..++++++++.+.+|+.... .+.|...++... ....+ ... ....+.+ .++.++++-..++.|...+ ..++.
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~-d~~v~i~d~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARL-DGHDFLFNTIIRDGSKML--KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEE-TTEEEEEECCSEETTTTS--CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccccceeeeecCCeEEEEEc-CCcEEEEEecccceeeEE--ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 445678888888888766544 467888887665 22111 111 2333333 3444555555667788888 44433
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
...+..... +..+++ +++. . ++++....+.|+..++..
T Consensus 132 ~~~~~~h~~~v~~~~~-~~~~---------------------------------------~-~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 132 REIDQAHVSEITKLKF-FPSG---------------------------------------E-ALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp EEETTSSSSCEEEEEE-CTTS---------------------------------------S-EEEEEETTSEEEEEETTT
T ss_pred eeecccccCccEEEEE-CCCC---------------------------------------C-EEEEEeCCCeEEEEeCCC
Confidence 333322222 444443 2221 1 333333344688888875
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCC-----------------
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPT----------------- 232 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~----------------- 232 (377)
... ...+ ......+.++++.+.+..|+.+. ..+.|...++.............. ...
T Consensus 171 ~~~--~~~~--~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 171 GSN--PRTL--IGHRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGTGTTIHTFNRKEN-PHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp CCC--CEEE--ECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEEECBTTB-TTCCEEEEEEEECCCSSCGG
T ss_pred CcC--ceEE--cCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCCCceeEEeecCCC-CCCCccEEEEecCCcceeee
Confidence 533 1111 12345588999998777776554 567888888764332222210000 000
Q ss_pred -CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE-EEeeCCCCCceeEEEcCCCC-eEEEEecCCCCeEEEEecC
Q psy5792 233 -PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY-VLISGGVDQPSALAVDPESG-YLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 233 -~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~-~l~~~~~~~P~~iavdp~~g-~lywtd~g~~~~I~r~~ld 309 (377)
.......+++++ .+++.++-...+.|.+.++...... .+..........++++|... +|+.... ...|...++.
T Consensus 245 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~i~vwd~~ 321 (420)
T 3vl1_A 245 ISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLR 321 (420)
T ss_dssp GCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET--TSEEEEEETT
T ss_pred cccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC--CCeEEEEEcC
Confidence 012233444554 3445555556678999998765433 33332345678999999766 5555542 4788888886
Q ss_pred CC-C-eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 310 GK-K-QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 310 G~-~-~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
.. . ...+....-.....+... .++++.+-. ..+.|...++..
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~-~d~~v~iw~~~~ 365 (420)
T 3vl1_A 322 SPECPVGEFLINEGTPINNVYFA--AGALFVSSG-FDTSIKLDIISD 365 (420)
T ss_dssp CTTSCSEEEEESTTSCEEEEEEE--TTEEEEEET-TTEEEEEEEECC
T ss_pred CCcCchhhhhccCCCCceEEEeC--CCCEEEEec-CCccEEEEeccC
Confidence 53 2 334433222334455543 456666665 666776666553
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.41 E-value=0.075 Score=48.68 Aligned_cols=242 Identities=9% Similarity=-0.049 Sum_probs=130.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.++++.+.+..|+ +-...+.|...++++. .+.+.. .........+++. ++.++++-..++.|...+ .+++..
T Consensus 9 ~~i~~~~~s~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIA-ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SCCCEEEECTTSSEEE-EECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEE-EEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 3567888888766554 4445788999998776 322211 1344567888884 344444444567788888 444433
Q ss_pred EEEe--cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 92 TVLR--NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 92 ~~~~--~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
..+. .... +..+.+ +++. .+++.+.. .+.|+..+++
T Consensus 88 ~~~~~~~~~~~v~~~~~-~~~~---------------------------------------~~l~~~~~-d~~v~i~d~~ 126 (372)
T 1k8k_C 88 PTLVILRINRAARCVRW-APNE---------------------------------------KKFAVGSG-SRVISICYFE 126 (372)
T ss_dssp EEEECCCCSSCEEEEEE-CTTS---------------------------------------SEEEEEET-TSSEEEEEEE
T ss_pred eeEEeecCCCceeEEEE-CCCC---------------------------------------CEEEEEeC-CCEEEEEEec
Confidence 2221 1111 333332 2211 13444443 2357777766
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC----------------CCcEEEEeccccCCCC
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG----------------TGRENIIEYVETGDPT 232 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G----------------~~~~~i~~~~~~~~~~ 232 (377)
..................+..+++.+.+..|+... ..+.|...++.. ...+.+... ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 200 (372)
T 1k8k_C 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-----SS 200 (372)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-----CC
T ss_pred CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEec-----CC
Confidence 54320001111122245688999998666665554 567888887531 011122110 02
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
....+.++++.+.+..| ++-...+.|.+.++........+.........++++|.+.+|... ....-+|+...
T Consensus 201 ~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 201 SCGWVHGVCFSANGSRV-AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSCEEEEEECSSSSEE-EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 23357889998755444 555566889999996544333334444457899999855444444 32233444443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.075 Score=48.66 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECC--CCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA--EDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETGDPTPV 234 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~--~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~ 234 (377)
.|.|+..++..... ............+..+++.+. +..|+.+. ..+.|...++.... ...... ...
T Consensus 78 dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-------~~~ 147 (379)
T 3jrp_A 78 DGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTTSPIIID-------AHA 147 (379)
T ss_dssp TSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCTTSCCCEEEEE-------CCT
T ss_pred CCEEEEEEcCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEec-CCCcEEEEecCCCCceeeEEec-------CCC
Confidence 34587777766532 111222223456889999886 55555554 57888888886542 222232 234
Q ss_pred CCcceEEEecc------------CCeEEEEcCCCCEEEEEEcCCCe-EE---EEeeCCCCCceeEEEcCC---CCeEEEE
Q psy5792 235 DQFTDIAVDWI------------AQNIYWSDPKENVIEVARLTGQY-RY---VLISGGVDQPSALAVDPE---SGYLFWS 295 (377)
Q Consensus 235 ~~p~~iavD~~------------~~~lYwtd~~~~~I~~~~~~g~~-~~---~l~~~~~~~P~~iavdp~---~g~lywt 295 (377)
..+..+++.+. .+.++.+-...+.|.+.++.... .. ..+........+++++|. ..+|+.+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 45778888864 35666666666788888876432 11 122233455789999997 4445444
Q ss_pred ecCCCCeEEEEecCCCC---eEEEEec--CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 296 ESGKIPLIARAGLDGKK---QTILAQE--IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 296 d~g~~~~I~r~~ldG~~---~~~l~~~--~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.. ...|...++.... ...+... .-.....+++.+.+..|+.+.. .+.|...+++
T Consensus 228 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~ 286 (379)
T 3jrp_A 228 SQ--DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN 286 (379)
T ss_dssp ET--TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEE
T ss_pred eC--CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCC
Confidence 43 3566666655432 2232222 1234677888876666665544 4555555554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.066 Score=47.63 Aligned_cols=271 Identities=10% Similarity=0.039 Sum_probs=149.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCC---
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGS--- 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~--- 89 (377)
+.+.+++. +.+++| .+-+..+.|...++++. ...... ........+++ .++.+.++-..++.|...+ .+..
T Consensus 19 ~~v~~~~~-~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 19 QDVRDVVA-VDDSKV-ASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp SCEEEEEE-EETTEE-EEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred CCcEEEEe-cCCCEE-EEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 35667777 544454 45566788999998777 333331 34556778888 3344444444566676666 3322
Q ss_pred ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
....+..... +..+.. + ..+++.+.. .+.|+..+ .
T Consensus 96 ~~~~~~~~~~~i~~~~~-~-----------------------------------------~~~l~~~~~-d~~i~~~d-~ 131 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSF-Q-----------------------------------------DGVVISGSW-DKTAKVWK-E 131 (313)
T ss_dssp C-CEECCCSSCEEEEEE-E-----------------------------------------TTEEEEEET-TSEEEEEE-T
T ss_pred cccchhhcccCEEEEEe-c-----------------------------------------CCEEEEEeC-CCCEEEEc-C
Confidence 1222222111 233332 1 012333333 33566666 1
Q ss_pred CCCceeeEEEEecCCCCceEEEEEEC-CCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCC
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHA-AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~-~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~ 247 (377)
+. ...........+..+++.+ ..+.++.. ...+.|...+.. ........ ..-..+..+++.+. +
T Consensus 132 ~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~~~~~~~------~~~~~i~~~~~~~~-~ 196 (313)
T 3odt_A 132 GS-----LVYNLQAHNASVWDAKVVSFSENKFLTA-SADKTIKLWQND--KVIKTFSG------IHNDVVRHLAVVDD-G 196 (313)
T ss_dssp TE-----EEEEEECCSSCEEEEEEEETTTTEEEEE-ETTSCEEEEETT--EEEEEECS------SCSSCEEEEEEEET-T
T ss_pred Cc-----EEEecccCCCceeEEEEccCCCCEEEEE-ECCCCEEEEecC--ceEEEEec------cCcccEEEEEEcCC-C
Confidence 11 1111112334567787776 44555444 456788877732 11222220 13345778888854 4
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gl 327 (377)
. +++-...+.|.+.++........+........+++++|. +.|+... ....|...++........+.........+
T Consensus 197 ~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 197 H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN-GDIVSCG--EDRTVRIWSKENGSLKQVITLPAISIWSV 272 (313)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SCEEEEE--TTSEEEEECTTTCCEEEEEECSSSCEEEE
T ss_pred e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC-CCEEEEe--cCCEEEEEECCCCceeEEEeccCceEEEE
Confidence 4 556666789999999855443334444566799999985 4655554 35788888876554443344333466788
Q ss_pred EEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 328 TLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 328 alD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
++.+.+ ++. +-. ..+.|...+++.+
T Consensus 273 ~~~~~~-~~~-~~~-~dg~i~iw~~~~~ 297 (313)
T 3odt_A 273 DCMSNG-DII-VGS-SDNLVRIFSQEKS 297 (313)
T ss_dssp EECTTS-CEE-EEE-TTSCEEEEESCGG
T ss_pred EEccCC-CEE-EEe-CCCcEEEEeCCCC
Confidence 887654 443 445 6778888887744
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.17 Score=51.47 Aligned_cols=237 Identities=13% Similarity=0.064 Sum_probs=139.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCC------c-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV------K-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG------~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~ 86 (377)
+.+.+++..+.+..+..+-+..+.|..-+++. . .+.+. .+......+++ .++.+..+-..++.|+..+ .
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 35678888887777878888888898888753 2 33443 44556677888 4555566666678888888 6
Q ss_pred CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 87 ~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+|.....+..... +.++.+ +++.. .|+ +....+.|+..
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~-s~~~~---------------------------------------~l~-s~s~D~~i~iw 499 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAF-SLDNR---------------------------------------QIV-SASRDRTIKLW 499 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEE-CTTSS---------------------------------------CEE-EEETTSCEEEE
T ss_pred CCcceeEEeCCCCCEEEEEE-eCCCC---------------------------------------EEE-EEeCCCEEEEE
Confidence 6666555543333 445443 22221 232 22222346666
Q ss_pred EcCCCCceeeEEEEec---CCCCceEEEEEECCC-CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEE
Q psy5792 166 KYNKNESKVTQVLGPL---SKVSLAAKVDFHAAE-DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~---~~~~~~~~l~~d~~~-~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ia 241 (377)
+..+... ..... .....+..+++.+.. ..++.+-...+.|...++.......... .....+..++
T Consensus 500 d~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-------~h~~~v~~v~ 568 (694)
T 3dm0_A 500 NTLGECK----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-------GHTGYVSTVA 568 (694)
T ss_dssp CTTSCEE----EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEE
T ss_pred ECCCCcc----eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-------CCCCCEEEEE
Confidence 5543311 11111 112236788887754 2345555567888888887544433333 3345688999
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
+.+. +++..+-...++|.+-++....+...+. .-.....+++.|.+..|.-+. ...|...++...
T Consensus 569 ~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~---~~~i~iwd~~~~ 633 (694)
T 3dm0_A 569 VSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT---EHGIKIWDLESK 633 (694)
T ss_dssp ECTT-SSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE---TTEEEEEETTTT
T ss_pred EeCC-CCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc---CCCEEEEECCCC
Confidence 9874 5566676667889999987654322222 234568899998544444333 234666665543
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0032 Score=62.41 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCceEEEEEECCCCEEEEEEcC---------------------CCcEEEEEcCCCC-------cEEEEeccccC----
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDID---------------------HGTISRTHRDGTG-------RENIIEYVETG---- 229 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~---------------------~~~I~~~~~~G~~-------~~~i~~~~~~~---- 229 (377)
+.+.+|..+++++.++.||++-.+ .|.|+++..++.. .+.++......
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 345679999999999999998432 2789999986532 23333211110
Q ss_pred ----------CCCCCCCcceEEEeccCCeEEE-EcCC-----------CCEEEEEEcCCCeEEEEeeC-CCCCceeEEEc
Q psy5792 230 ----------DPTPVDQFTDIAVDWIAQNIYW-SDPK-----------ENVIEVARLTGQYRYVLISG-GVDQPSALAVD 286 (377)
Q Consensus 230 ----------~~~~~~~p~~iavD~~~~~lYw-td~~-----------~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavd 286 (377)
....+..|.+|++|. .++||+ ||.. ++.+++.+.+....+.++.. ....|.|+++.
T Consensus 461 ~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS 539 (592)
T 4a9v_A 461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence 012477899999996 689999 8864 34899999864444444443 35689999999
Q ss_pred CCCCeEEEEec
Q psy5792 287 PESGYLFWSES 297 (377)
Q Consensus 287 p~~g~lywtd~ 297 (377)
|....||++-.
T Consensus 540 PD~ktLfV~vQ 550 (592)
T 4a9v_A 540 PDQKTLFVGIQ 550 (592)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999975
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.34 E-value=0.08 Score=47.60 Aligned_cols=225 Identities=11% Similarity=0.052 Sum_probs=132.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.+++..+.+..|+ +-+..+.|...|+... ..++. ........+++ .++.++++-..++.|...+ .+++...
T Consensus 67 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 67 GISDVAWSSDSNLLV-SASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp CEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ceEEEEEcCCCCEEE-EECCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 566788887665554 4455678888888655 55553 44555677777 3445555555667888888 5666555
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.+..... +..+.+ +++.. +++ +....+.|+..++....
T Consensus 144 ~~~~~~~~v~~~~~-~~~~~---------------------------------------~l~-~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 144 TLPAHSDPVSAVHF-NRDGS---------------------------------------LIV-SSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EECCCSSCEEEEEE-CTTSS---------------------------------------EEE-EEETTSCEEEEETTTCC
T ss_pred EecCCCCcEEEEEE-cCCCC---------------------------------------EEE-EEeCCCcEEEEECCCCc
Confidence 5543323 333332 22211 233 33333458888876553
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCC--cceEEEeccCCeE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQ--FTDIAVDWIAQNI 249 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~--p~~iavD~~~~~l 249 (377)
. .. ............+++++.+..|..+. ..+.|...++.......... ..... .....+....+.+
T Consensus 183 ~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 183 C--LK-TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYT-------GHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp E--EE-EECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEEEEEC-------SSCCSSSCCCEEEECSSSCE
T ss_pred e--ee-EEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEE-------ecCCceEEEEEEEEeCCCcE
Confidence 2 11 11112233467788998777766655 56788888886433222222 11111 2223344446777
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 250 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 250 Ywtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+.+-...+.|.+.++........+.........++.+|....|.-+.
T Consensus 252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 77877788999999987655444444456678999999766666554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.1 Score=48.30 Aligned_cols=246 Identities=10% Similarity=0.006 Sum_probs=134.6
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE----CCeEEEEcCCCCceEEEc-CCCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY----KGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~----~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
..+.+++..+.++.++++-+..+.|...+++.. ..... ........+++. ++.++++-..++.|...+ .+++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 467778888756666667677889999999887 44444 334455666662 333555555667888888 5666
Q ss_pred ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
....+..... +..+.+ +++. ..++++....|.|+..++.
T Consensus 178 ~~~~~~~~~~~v~~~~~-~~~~---------------------------------------~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 178 CSHILQGHRQEILAVSW-SPRY---------------------------------------DYILATASADSRVKLWDVR 217 (408)
T ss_dssp CCEEECCCCSCEEEEEE-CSSC---------------------------------------TTEEEEEETTSCEEEEETT
T ss_pred eeeeecCCCCcEEEEEE-CCCC---------------------------------------CcEEEEEcCCCcEEEEECC
Confidence 6655553333 444443 2221 1244444344458877775
Q ss_pred CCCceeeEEEE------------e-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC
Q psy5792 169 KNESKVTQVLG------------P-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD 235 (377)
Q Consensus 169 ~~~~~~~~~~~------------~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~ 235 (377)
..... ...+. . ......+..+++.+.+..|+... ..+.|...++........... . ......
T Consensus 218 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~--~-~~~~~~ 292 (408)
T 4a11_B 218 RASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYG--K-VCNNSK 292 (408)
T ss_dssp CSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCC--C-CCCCCS
T ss_pred CCCcc-cccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccc--c-cccccc
Confidence 43210 00000 0 11234578999998766776665 567888888874332111110 0 000011
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
....+.+.......+.+-...+.|.+.++........+........+++++|...+|+-+.. .+.|...+++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iw~~~~ 365 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR--DCNILAWVPSL 365 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEEEEECC
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC--CCeEEEEeCCC
Confidence 11122222122222222233468888888765544444444556789999997666666653 35666665553
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.15 Score=50.21 Aligned_cols=280 Identities=10% Similarity=-0.038 Sum_probs=157.5
Q ss_pred cCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcC-C----c-EEEEEeCCCCCc-eEEEEEE---CCeEEEEcCCCCc
Q psy5792 11 RNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE-V----K-VAKVVSMPDAAQ-VVAAVFY---KGRIIYSDANDGN 80 (377)
Q Consensus 11 ~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d-G----~-~~~i~~~~~~~~-p~~lav~---~~~ly~td~~~~~ 80 (377)
+.+..+.+..++++++++.|.... .+.|...+++ + . ...+. ..... ...+++. ++.+.++-..++.
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~sp~~~~~~l~s~~~dg~ 89 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGDESGK 89 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CCCccCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEe--cCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence 334457899999999998887776 5678888875 6 6 66553 44455 7889983 5566666556777
Q ss_pred eEEEc-CCC--------CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCc
Q psy5792 81 IRSIN-LDG--------SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISD 150 (377)
Q Consensus 81 I~~~~-~~g--------~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~ 150 (377)
|...+ .+| .....+..... +..+.+ +++. .
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~---------------------------------------~ 129 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DFEG---------------------------------------R 129 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE-CTTS---------------------------------------S
T ss_pred EEEEeCCCCcccccccccccchhhcccccEEEEEE-eCCC---------------------------------------C
Confidence 88777 344 22222322222 334433 2222 1
Q ss_pred EEEEEeCCC---CeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecc
Q psy5792 151 FILFSVNSG---YDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYV 226 (377)
Q Consensus 151 ~l~~s~~~~---~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~ 226 (377)
+|+.+..+. +.|+..+ ... .+..+ .....+..+++.+.+..++.+-...+.|...+...........
T Consensus 130 ~l~~~~~~~~~~~~v~~~d--~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-- 200 (615)
T 1pgu_A 130 RLCVVGEGRDNFGVFISWD--SGN-----SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-- 200 (615)
T ss_dssp EEEEEECCSSCSEEEEETT--TCC-----EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--
T ss_pred EEEEeccCCCCccEEEEEE--CCC-----cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec--
Confidence 344443321 2243332 111 11112 2334578899998776566665577888888876433222222
Q ss_pred ccCCCCCCC---CcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEe-e---CCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 227 ETGDPTPVD---QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI-S---GGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 227 ~~~~~~~~~---~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~-~---~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
.... .+..+++.+.+++++++-...+.|.+.++........+ . .......++++. ...+|+.+..
T Consensus 201 -----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-- 272 (615)
T 1pgu_A 201 -----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-- 272 (615)
T ss_dssp -----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET--
T ss_pred -----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC--
Confidence 2233 57789998762555555555678999998755433333 3 334567899998 4445555542
Q ss_pred CCeEEEEecCCCCe-EEEEecC---CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 300 IPLIARAGLDGKKQ-TILAQEI---IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 300 ~~~I~r~~ldG~~~-~~l~~~~---~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
...|...++..... ..+.... -..+..+... .++.|+ +-. ..+.|...++..
T Consensus 273 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~-~~g~i~~~d~~~ 328 (615)
T 1pgu_A 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII-SLS-LDGTLNFYELGH 328 (615)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE-EEE-TTSCEEEEETTE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE-EEE-CCCCEEEEECCC
Confidence 46777777763332 2222210 1234455553 334444 344 466777777663
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.19 Score=51.30 Aligned_cols=246 Identities=8% Similarity=0.031 Sum_probs=134.3
Q ss_pred CccccccCCCCeEEEEeCCCC----cEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC------------
Q psy5792 18 VASTLKPQSGPFVYGVKTLSH----SLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND------------ 78 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~----~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~------------ 78 (377)
..+.++.+++.+|.++....+ .|+..|+++. ...... ... ...++++ .+..||++....
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 456788888888877755433 8999999888 443321 111 2445777 456788875432
Q ss_pred ---CceEEEc-CCCCc--eEEEecCCC---ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCC
Q psy5792 79 ---GNIRSIN-LDGSN--STVLRNNAG---ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGIS 149 (377)
Q Consensus 79 ---~~I~~~~-~~g~~--~~~~~~~~~---p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~ 149 (377)
..|++.+ .+++. ..+...... ..++.+ +++.
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~-SpDg--------------------------------------- 244 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL-SDDG--------------------------------------- 244 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE-CTTS---------------------------------------
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE-cCCC---------------------------------------
Confidence 2366665 33332 122221110 122221 2221
Q ss_pred cEEEEEeC-C---CCeEEEEEcCC------CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC---CCcEEEEEcCC
Q psy5792 150 DFILFSVN-S---GYDIMGIKYNK------NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID---HGTISRTHRDG 216 (377)
Q Consensus 150 ~~l~~s~~-~---~~~I~~~~l~~------~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~---~~~I~~~~~~G 216 (377)
.+|+++.. . ...|+.++++. ...+ ...+..-.. .... .+.+.++.||+.... ..+|+++++++
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~l~~~~~-~~~~--~~s~dg~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-WVKLIDNFE-GEYD--YVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-CEEEECSSS-SCEE--EEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccCCccc-eEEeeCCCC-cEEE--EEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 24554432 1 23588888864 2110 122221111 1122 244558888887543 34799999986
Q ss_pred CC---cEEEEeccccCCCCCC-CCcceEEEeccCCeEEEEcCCC--CEEEEEEc-CCCeEEEEeeCCCCCceeEEEcCCC
Q psy5792 217 TG---RENIIEYVETGDPTPV-DQFTDIAVDWIAQNIYWSDPKE--NVIEVARL-TGQYRYVLISGGVDQPSALAVDPES 289 (377)
Q Consensus 217 ~~---~~~i~~~~~~~~~~~~-~~p~~iavD~~~~~lYwtd~~~--~~I~~~~~-~g~~~~~l~~~~~~~P~~iavdp~~ 289 (377)
.. .+.++. ..- ....++++. .++.|+++-... .+|.+.++ +|+..+.+.. ......+++.+|..
T Consensus 321 ~~~~~~~~l~~-------~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 321 PEESKWKVLVP-------EHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKD 391 (710)
T ss_dssp CCGGGCEEEEC-------CCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTC
T ss_pred CCcccceeccC-------CCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCC
Confidence 53 255554 211 134555554 267788875544 47888998 6765444432 23445678888877
Q ss_pred CeEEEEecC--CCCeEEEEecCCCC--eEEEEe
Q psy5792 290 GYLFWSESG--KIPLIARAGLDGKK--QTILAQ 318 (377)
Q Consensus 290 g~lywtd~g--~~~~I~r~~ldG~~--~~~l~~ 318 (377)
..|+++-.+ ..+.|++.++.... .+.+-.
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSSCCCEEEEE
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCccceEEeee
Confidence 778876432 35789999997655 555544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.12 Score=47.75 Aligned_cols=291 Identities=8% Similarity=0.004 Sum_probs=154.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEe-----------CCCCCceEEEEEE--CCeEEEEcCCCCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVS-----------MPDAAQVVAAVFY--KGRIIYSDANDGN 80 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~-----------~~~~~~p~~lav~--~~~ly~td~~~~~ 80 (377)
+.+.++++.+.++.+.++-+..+.|...+++.. ...+.. .........+++. ++.++++-..++.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 467788888833444455556788999998765 222210 0134456778873 4556666666778
Q ss_pred eEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 81 IRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 81 I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
|...+ .+++....+.....+..+.. .+.. .+..++++....
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------------------~~~~~~~~~~~~ 165 (408)
T 4a11_B 124 LKVWDTNTLQTADVFNFEETVYSHHM-SPVS-------------------------------------TKHCLVAVGTRG 165 (408)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEE-CSSC-------------------------------------SSCCEEEEEESS
T ss_pred EEEeeCCCCccceeccCCCceeeeEe-ecCC-------------------------------------CCCcEEEEEcCC
Confidence 88888 55544444432211223322 1100 011233333333
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEecccc--------CC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVET--------GD 230 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~--------~~ 230 (377)
+.|+..++..... ...+ ......+.++++.+.+.+++++-...+.|...++.... .......... ..
T Consensus 166 ~~v~~~d~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 166 PKVQLCDLKSGSC--SHIL--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp SSEEEEESSSSCC--CEEE--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred CeEEEEeCCCcce--eeee--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 4588888875533 1111 12344578999998777667666677888888886432 1111100000 00
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC----CCCCc--eeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG----GVDQP--SALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~----~~~~P--~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
......+.++++.+.+..| ++-...+.|.+.++........... ....+ .....+. .+.+.++.. ...|.
T Consensus 242 ~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~i~ 317 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHL-LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC-SSEFVFVPY--GSTIA 317 (408)
T ss_dssp CSCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS-SSCEEEEEE--TTEEE
T ss_pred ccccCceeEEEEcCCCCEE-EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC-CceEEEEec--CCEEE
Confidence 0122347789998754444 4545567899988876443211111 01111 1222222 333444432 35777
Q ss_pred EEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 305 RAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 305 r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
..++........+...-.....+++.+.+..|+.+ . ..+.|..-+++.
T Consensus 318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~-~dg~i~iw~~~~ 365 (408)
T 4a11_B 318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG-S-RDCNILAWVPSL 365 (408)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE-E-TTSCEEEEEECC
T ss_pred EEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE-C-CCCeEEEEeCCC
Confidence 77766544433333323556789998765555544 4 466777777664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.23 E-value=0.21 Score=51.30 Aligned_cols=118 Identities=13% Similarity=0.155 Sum_probs=71.1
Q ss_pred eEEEeccCCe-EEEEcCCC--CEEEEEEcCCCe-------EEEEe-eCC---CC--CceeEEEcCCCCeEE-EEe-cCCC
Q psy5792 239 DIAVDWIAQN-IYWSDPKE--NVIEVARLTGQY-------RYVLI-SGG---VD--QPSALAVDPESGYLF-WSE-SGKI 300 (377)
Q Consensus 239 ~iavD~~~~~-lYwtd~~~--~~I~~~~~~g~~-------~~~l~-~~~---~~--~P~~iavdp~~g~ly-wtd-~g~~ 300 (377)
.++.-+.++. +++.+... .+|..+++++.. ...++ ... .. .+...+..|.+..|+ |.. ....
T Consensus 264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~ 343 (740)
T 4a5s_A 264 DVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY 343 (740)
T ss_dssp EEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC
T ss_pred EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc
Confidence 4445444432 34445443 368888887654 12222 211 11 155778888776665 553 2225
Q ss_pred CeEEEEecCCCCeEEEEecCCCCceE-EEEeCCCCEEEEEEeCC------CCeEEEEEccCCceEEE
Q psy5792 301 PLIARAGLDGKKQTILAQEIIMPIKD-ITLDRKNKRVYWCYSVG------SNVLESMDYSGGSKMQL 360 (377)
Q Consensus 301 ~~I~r~~ldG~~~~~l~~~~~~~P~g-lalD~~~~~LYw~d~~~------~~~i~~~~~~G~~~~~~ 360 (377)
..|+..+++|...+.|..... .... +..| +++||++.. . ...|++++++|+..++.
T Consensus 344 ~~l~~~~~~~~~~~~lT~g~~-~v~~~~~~d--~~~i~f~~~-~~~~~~~~~~ly~v~~~g~~~~~~ 406 (740)
T 4a5s_A 344 RHICYFQIDKKDCTFITKGTW-EVIGIEALT--SDYLYYISN-EYKGMPGGRNLYKIQLIDYTKVTC 406 (740)
T ss_dssp EEEEEEETTCSSCEESCCSSS-CEEEEEEEC--SSEEEEEES-CGGGCTTCBEEEEEETTEEEEEEE
T ss_pred eEEEEEECCCCceEecccCCE-EEEEEEEEe--CCEEEEEEe-cCCCCCceeEEEEEECCCCCccee
Confidence 789999999988777665432 2222 3465 789999876 4 35899999997655433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.11 Score=47.08 Aligned_cols=269 Identities=8% Similarity=0.007 Sum_probs=147.7
Q ss_pred cCCccccccCCC--CeEEEEeCCCCcEEEEEcCC--c-E-EEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CC
Q psy5792 16 GAVASTLKPQSG--PFVYGVKTLSHSLHYVNIEV--K-V-AKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 16 ~~~~~~~~d~~~--~~ly~~d~~~~~I~~~~~dG--~-~-~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~ 87 (377)
+.+.+++..+.. +.+.++-...+.|...+++. . . ..+. ........+++. ++...++-..++.|...+ .+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ--MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec--cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 477889999875 56666666778899999874 4 4 4443 445567888883 444444445567888888 44
Q ss_pred CCceEEEecCCCceeEEee-ecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 88 GSNSTVLRNNAGISDFILF-SVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 88 g~~~~~~~~~~~p~~i~v~-~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
++..........+..+.+. +++ ..++++....+.|+..+
T Consensus 118 ~~~~~~~~~~~~v~~~~~~~~~~----------------------------------------~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 118 NQAIQIAQHDAPVKTIHWIKAPN----------------------------------------YSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp TEEEEEEECSSCEEEEEEEECSS----------------------------------------CEEEEEEETTSEEEEEC
T ss_pred CCceeeccccCceEEEEEEeCCC----------------------------------------CCEEEEccCCCcEEEEE
Confidence 5444433322224444431 121 12344444445688888
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
+..... ... +........+++. ...++.+. ..+.+...+++.......... . ........+++.+..
T Consensus 158 ~~~~~~--~~~---~~~~~~~~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 158 TRSSNP--MMV---LQLPERCYCADVI--YPMAVVAT-AERGLIVYQLENQPSEFRRIE--S---PLKHQHRCVAIFKDK 224 (368)
T ss_dssp SSCSSC--SEE---EECSSCEEEEEEE--TTEEEEEE-GGGCEEEEECSSSCEEEEECC--C---SCSSCEEEEEEEECT
T ss_pred CCCCcE--EEE---EecCCCceEEEec--CCeeEEEe-CCCcEEEEEeccccchhhhcc--c---cccCCCceEEEcccC
Confidence 765433 111 1222345555555 55666655 456777777765432222110 0 111223344444322
Q ss_pred C---eEEEEcCCCCEEEEEEcCCCe---EEEEeeCCCC------------CceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 247 Q---NIYWSDPKENVIEVARLTGQY---RYVLISGGVD------------QPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 247 ~---~lYwtd~~~~~I~~~~~~g~~---~~~l~~~~~~------------~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
. ..+.+-...+.|.+.+++... ....+..... ...+++++|...+|+.+.. .+.|...++
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~i~iwd~ 302 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--DGRFSFWDK 302 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET--TSCEEEEET
T ss_pred CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc--CCeEEEEEC
Confidence 2 224455556788888887642 1111121111 4789999997777776653 467888887
Q ss_pred CCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 309 dG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
........+...-.....+++.+.+..|..+..
T Consensus 303 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 303 DARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp TTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred CCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 744333222222345788999877666666643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.20 E-value=0.12 Score=46.63 Aligned_cols=278 Identities=12% Similarity=0.029 Sum_probs=145.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-------EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-------VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-------~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~ 86 (377)
+.++++++.+.++.+..+-+..+.|..-+++.. .+++ .........+++ .++.+..+-..++.|...+ .
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 468889999887777667777788887776532 1222 133455677777 3444444444556666666 3
Q ss_pred CCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 87 DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 87 ~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
.+...................+. ...++.+..+ +.++..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~s~s~d-~~~~~~d 156 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSD---------------------------------------NRQIVSGSRD-KTIKLWN 156 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTT---------------------------------------SSCEEEEETT-SCEEEEC
T ss_pred ccceeeeecCCCCceeEEEEeec---------------------------------------CccceeecCC-CeEEEEE
Confidence 33222222211111111111111 1123333222 2355555
Q ss_pred cCCCCceeeEEEEecC-CCCceEEEEEECCCC-EEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec
Q psy5792 167 YNKNESKVTQVLGPLS-KVSLAAKVDFHAAED-YIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~-~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
+..... ...... .......+++..... .++.+-...+.|...++.......... ..-..+.+|++.+
T Consensus 157 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-------~h~~~v~~~~~s~ 225 (340)
T 4aow_A 157 TLGVCK----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-------GHTGYLNTVTVSP 225 (340)
T ss_dssp TTSCEE----EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECT
T ss_pred eCCCce----EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-------CCCCcEEEEEECC
Confidence 443311 111111 233455666655433 444555566788888876543333332 2334578899987
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec-----
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE----- 319 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~----- 319 (377)
. ++++++-...++|.+.++........+.. -.....++..|. +.+..+-. ...|...++.+.....-...
T Consensus 226 ~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 226 D-GSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPN-RYWLCAAT--GPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp T-SSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SSEEEEEE--TTEEEEEETTTTEEEEEECCC----
T ss_pred C-CCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCC-CceeeccC--CCEEEEEECCCCeEEEeccccceee
Confidence 4 55556666678999999987665444443 345688888874 44444432 35777777765432211111
Q ss_pred ----CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 320 ----IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 320 ----~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.......+++.+.+..|+- -. ..+.|..-++.
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~s-gs-~Dg~v~iW~~~ 336 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFA-GY-TDNLVRVWQVT 336 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEE-EE-TTSCEEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCEEEE-Ee-CCCEEEEEeCC
Confidence 1234567788765454443 33 45556555544
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=46.87 Aligned_cols=228 Identities=10% Similarity=0.065 Sum_probs=122.3
Q ss_pred cCCccccccCCCC-eEEEEeCCCCcEEEEEc-CCc-EEEEEeCC--CCCceEEEEEECCeEEEEcCCCCceEEEc-CC--
Q psy5792 16 GAVASTLKPQSGP-FVYGVKTLSHSLHYVNI-EVK-VAKVVSMP--DAAQVVAAVFYKGRIIYSDANDGNIRSIN-LD-- 87 (377)
Q Consensus 16 ~~~~~~~~d~~~~-~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~--~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~-- 87 (377)
..+.+++..+.+. .|+ +-...+.|...++ ++. ...+. . .......|++..+.++++-..++.|...+ ..
T Consensus 57 ~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIY-VGTVQGEILKVDLIGSPSFQALT--NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp SCEEEEEEEESSSEEEE-EEETTSCEEEECSSSSSSEEECB--SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred CceEEEEECCCCCcEEE-EEcCCCeEEEEEeccCCceEecc--ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccc
Confidence 4677788887766 454 4445688999999 887 76553 3 45566788885455555555667777777 32
Q ss_pred -------CCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC
Q psy5792 88 -------GSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY 160 (377)
Q Consensus 88 -------g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~ 160 (377)
++....+.....+.++.+ .++. ++.+. ..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~-----------------------------------------~~~~-l~~~~-~d~ 170 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTKVKNKIFTMDT-----------------------------------------NSSR-LIVGM-NNS 170 (342)
T ss_dssp TBCEEEEESCSSSSSSCCCEEEEEE-----------------------------------------CSSE-EEEEE-STT
T ss_pred cccccccCCeeeEEeeCCceEEEEe-----------------------------------------cCCc-EEEEe-CCC
Confidence 211111110000222221 0112 33333 233
Q ss_pred eEEEEEcCC-CCceeeEEEEecCCCCceEEEEEEC-CCCEEEEEEcCCCcEEEEEcCCC------CcEEEEecccc--CC
Q psy5792 161 DIMGIKYNK-NESKVTQVLGPLSKVSLAAKVDFHA-AEDYIYWVDIDHGTISRTHRDGT------GRENIIEYVET--GD 230 (377)
Q Consensus 161 ~I~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~d~-~~~~ly~sd~~~~~I~~~~~~G~------~~~~i~~~~~~--~~ 230 (377)
.|+..++.. ... ............+..+++.+ .+..++... ..+.|...+++.. ........... ..
T Consensus 171 ~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T 1yfq_A 171 QVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp EEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred eEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccc
Confidence 588888876 322 11122223344678899987 666666555 5677777666543 22222220000 00
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-CCCceeEEEcCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-VDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~g~lywt 295 (377)
......+..+++.+..+.| ++-...++|.+.++........+... .....+++ |...+|..+
T Consensus 248 ~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~ 310 (342)
T 1yfq_A 248 TNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310 (342)
T ss_dssp CSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEE
T ss_pred cccceeEEEEEEcCCCCEE-EEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEE
Confidence 0002257889998755555 45455678999999865543333332 33446666 544444444
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.2 Score=49.24 Aligned_cols=158 Identities=5% Similarity=-0.055 Sum_probs=99.1
Q ss_pred CCceEEEEEECCCCEEEEEEcCC---CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDH---GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIE 260 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~---~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~ 260 (377)
...+..+++.+.+..|..+.... +.|+..+ .+ ....... .....+..+++.+.+..++.+-...+.|.
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~-~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SG-NSLGEVS-------GHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TC-CEEEECC-------SCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CC-Ccceeee-------cCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 44588999999888887776432 3555444 12 2122222 23445888999976665777777778999
Q ss_pred EEEcCCCeEEEEeeCCCC---CceeEEEcCC-CCeEEEEecCCCCeEEEEecCCCCeEEEE-e---cCCCCceEEEEeCC
Q psy5792 261 VARLTGQYRYVLISGGVD---QPSALAVDPE-SGYLFWSESGKIPLIARAGLDGKKQTILA-Q---EIIMPIKDITLDRK 332 (377)
Q Consensus 261 ~~~~~g~~~~~l~~~~~~---~P~~iavdp~-~g~lywtd~g~~~~I~r~~ldG~~~~~l~-~---~~~~~P~glalD~~ 332 (377)
+.++........+..... ....++++|. ..+|+.... ...|...++........+ . ..-.....+++. .
T Consensus 187 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 263 (615)
T 1pgu_A 187 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D 263 (615)
T ss_dssp EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S
T ss_pred EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C
Confidence 999877654444443344 5789999997 555555543 467888887644433333 2 223456778886 4
Q ss_pred CCEEEEEEeCCCCeEEEEEccCC
Q psy5792 333 NKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 333 ~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
++++++-. ..+.|...++..+
T Consensus 264 -~~~l~~~~-~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 264 -SQKFATVG-ADATIRVWDVTTS 284 (615)
T ss_dssp -SSEEEEEE-TTSEEEEEETTTT
T ss_pred -CCEEEEEc-CCCcEEEEECCCC
Confidence 44445555 5678888887744
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0058 Score=60.53 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=80.9
Q ss_pred CCCCCcceEEEeccCCeEEEEcCC---------------------CCEEEEEEcCCC------e--EEEEeeC-------
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPK---------------------ENVIEVARLTGQ------Y--RYVLISG------- 275 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~---------------------~~~I~~~~~~g~------~--~~~l~~~------- 275 (377)
..+.+|+++++++.++.||++-.+ .+.|++...++. + ...++..
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 456689999999999999998432 268999988652 1 1122210
Q ss_pred -------------CCCCceeEEEcCCCCeEEE-EecC----------CCCeEEEEecCCCCeEEEEec-CCCCceEEEEe
Q psy5792 276 -------------GVDQPSALAVDPESGYLFW-SESG----------KIPLIARAGLDGKKQTILAQE-IIMPIKDITLD 330 (377)
Q Consensus 276 -------------~~~~P~~iavdp~~g~lyw-td~g----------~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD 330 (377)
.+..|..|++|+ .|.||+ ||.+ .+..+++.+.+....+.++.. ....|+|+++.
T Consensus 461 ~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS 539 (592)
T 4a9v_A 461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred ccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence 268899999997 699999 7742 134788988764455555543 24679999999
Q ss_pred CCCCEEEEEEeCCCC
Q psy5792 331 RKNKRVYWCYSVGSN 345 (377)
Q Consensus 331 ~~~~~LYw~d~~~~~ 345 (377)
+..+.||++-. ..+
T Consensus 540 PD~ktLfV~vQ-HPG 553 (592)
T 4a9v_A 540 PDQKTLFVGIQ-HPG 553 (592)
T ss_dssp TTSSEEEEEEE-STT
T ss_pred CCCCEEEEEEe-CCC
Confidence 99999999987 443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.17 Score=47.87 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=141.0
Q ss_pred CceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCC
Q psy5792 59 AQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSK 135 (377)
Q Consensus 59 ~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~ 135 (377)
.....+++ ..+.+.++-..++.|...+ .+|+....+..... +..+.+ +++..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~-~~~~~------------------------ 163 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGK------------------------ 163 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEE-CTTSS------------------------
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEE-cCCCC------------------------
Confidence 34566777 3445666666677888888 66766666654333 444443 22221
Q ss_pred ccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEc
Q psy5792 136 VSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR 214 (377)
Q Consensus 136 ~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~ 214 (377)
++++....+.|+..++..... +..+. ....+.++++.+.++.|+-+ ...+.|...++
T Consensus 164 ----------------~l~sgs~D~~i~iwd~~~~~~-----~~~~~~h~~~V~~v~~~p~~~~l~s~-s~D~~i~~wd~ 221 (410)
T 1vyh_C 164 ----------------LLASCSADMTIKLWDFQGFEC-----IRTMHGHDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEV 221 (410)
T ss_dssp ----------------EEEEEETTSCCCEEETTSSCE-----EECCCCCSSCEEEEEECSSSSEEEEE-ETTSEEEEEET
T ss_pred ----------------EEEEEeCCCeEEEEeCCCCce-----eEEEcCCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Confidence 333433334577777765432 22222 23457889999866666544 46788888888
Q ss_pred CCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCC-----
Q psy5792 215 DGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPES----- 289 (377)
Q Consensus 215 ~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~----- 289 (377)
........+. ........+++.+ .+.++.+-...+.|.+.++........+.........+++.|..
T Consensus 222 ~~~~~~~~~~-------~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 222 QTGYCVKTFT-------GHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp TTCCEEEEEE-------CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred CCCcEEEEEe-------CCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccch
Confidence 6443322333 2334577788875 45666776677889999987665444444444556788888752
Q ss_pred --------------CeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 290 --------------GYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 290 --------------g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
|.+.++-. ....|...++........+...-....++++++.+..|+ +-. ..+.|..-++..+
T Consensus 294 ~~~~~~~~~~~~~~g~~l~sgs-~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s-~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 294 SEATGSETKKSGKPGPFLLSGS-RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCA-DDKTLRVWDYKNK 370 (410)
T ss_dssp GGCCSCC-------CCEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEE-EEE-TTTEEEEECCTTS
T ss_pred hhhccccccccCCCCCEEEEEe-CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEE-EEe-CCCeEEEEECCCC
Confidence 33444433 246777777764332222222234567899976555444 555 5677877777644
Q ss_pred c
Q psy5792 356 S 356 (377)
Q Consensus 356 ~ 356 (377)
.
T Consensus 371 ~ 371 (410)
T 1vyh_C 371 R 371 (410)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.17 Score=47.31 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=124.4
Q ss_pred ccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC
Q psy5792 23 KPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG 99 (377)
Q Consensus 23 ~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~ 99 (377)
..+.+ .++.+-+..+.|...++.+. ..... .........+++ .++.+.++-..++.|...+ .+++....+.....
T Consensus 105 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~ 182 (420)
T 3vl1_A 105 AKLQM-RRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA 182 (420)
T ss_dssp ECSSS-CEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred EecCC-CEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence 34444 44455566788999998877 54442 244556788888 3444555555677888888 66776666654333
Q ss_pred -ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 100 -ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 100 -p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
+..+++ +++.. .|+ +....+.|+..++..... ...+
T Consensus 183 ~v~~~~~-~~~~~---------------------------------------~l~-s~~~d~~v~iwd~~~~~~--~~~~ 219 (420)
T 3vl1_A 183 TVTDIAI-IDRGR---------------------------------------NVL-SASLDGTIRLWECGTGTT--IHTF 219 (420)
T ss_dssp CEEEEEE-ETTTT---------------------------------------EEE-EEETTSCEEEEETTTTEE--EEEE
T ss_pred cEEEEEE-cCCCC---------------------------------------EEE-EEcCCCcEEEeECCCCce--eEEe
Confidence 555554 33221 232 222223466666554321 1111
Q ss_pred Eec-CCC---------------------CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCC
Q psy5792 179 GPL-SKV---------------------SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQ 236 (377)
Q Consensus 179 ~~~-~~~---------------------~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~ 236 (377)
... ... ..+..+++++. +.+.++-...+.|...++........... .....
T Consensus 220 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~ 292 (420)
T 3vl1_A 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPS------KFTCS 292 (420)
T ss_dssp CBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECC------TTSSC
T ss_pred ecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEccc------ccCCC
Confidence 000 011 12223334453 44444444678888888865432222220 12345
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCe--EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQY--RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
+..+++.+.++.++++-...+.|.+.++.... ...+..........++.. .+.++.+-. ....|...++..
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~-~d~~v~iw~~~~ 365 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSG-FDTSIKLDIISD 365 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEET-TTEEEEEEEECC
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEec-CCccEEEEeccC
Confidence 88899997666466776777899999997642 334433223334555553 344455432 235555555443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.21 Score=47.41 Aligned_cols=258 Identities=10% Similarity=0.053 Sum_probs=142.0
Q ss_pred eEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEE
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFI 104 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~ 104 (377)
...++-+..+.|...|+... ..++. ........+++. +.+.++-..++.|...+ .+|+....+..... +..+.
T Consensus 144 ~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 220 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNTLECKRILT--GHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220 (435)
T ss_dssp SEEEEEESSSCEEEEESSSCCEEEEEC--CCSSCEEEEECC-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEc--CCCCcEEEEEEC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 44455566788999998766 44442 444556777774 44555555678888888 66766555543222 33333
Q ss_pred eeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE-EEecCC
Q psy5792 105 LFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV-LGPLSK 183 (377)
Q Consensus 105 v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~-~~~~~~ 183 (377)
. ++ . .+++....+.|+..++..... ... ......
T Consensus 221 ~-~~-----------------------------------------~-~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~ 255 (435)
T 1p22_A 221 F-NN-----------------------------------------G-MMVTCSKDRSIAVWDMASPTD--ITLRRVLVGH 255 (435)
T ss_dssp C-CT-----------------------------------------T-EEEEEETTSCEEEEECSSSSC--CEEEEEECCC
T ss_pred E-cC-----------------------------------------C-EEEEeeCCCcEEEEeCCCCCC--ceeeeEecCC
Confidence 2 10 1 233333334588888765533 111 111223
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+.+++++ ++.|+.+. ..+.|...++.......... .....+..++++ ++++++-...+.|.+.+
T Consensus 256 ~~~v~~~~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 256 RAAVNVVDFD--DKYIVSAS-GDRTIKVWNTSTCEFVRTLN-------GHKRGIACLQYR---DRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp SSCEEEEEEE--TTEEEEEE-TTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEEE---TTEEEEEETTSCEEEEE
T ss_pred CCcEEEEEeC--CCEEEEEe-CCCeEEEEECCcCcEEEEEc-------CCCCcEEEEEeC---CCEEEEEeCCCeEEEEE
Confidence 3456778775 66776665 56888888887544333333 233456677775 44556666678899999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC---------eEEEEecCCCCceEEEEeCCCC
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK---------QTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~---------~~~l~~~~~~~P~glalD~~~~ 334 (377)
+........+........++++| ..+|..... .+.|...++.... ........-.....++.| +.
T Consensus 323 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~ 396 (435)
T 1p22_A 323 IECGACLRVLEGHEELVRCIRFD--NKRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF 396 (435)
T ss_dssp TTTCCEEEEECCCSSCEEEEECC--SSEEEEEET--TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SS
T ss_pred CCCCCEEEEEeCCcCcEEEEEec--CCEEEEEeC--CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC--CC
Confidence 98554433344344556777774 345555543 4566666553211 222222223455677774 23
Q ss_pred EEEEEEeCCCCeEEEEEccCC
Q psy5792 335 RVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~ 355 (377)
..++-. ..+.|...++...
T Consensus 397 -~l~s~s-~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 397 -QIVSSS-HDDTILIWDFLND 415 (435)
T ss_dssp -CEEECC-SSSEEEEEC----
T ss_pred -EEEEEe-CCCEEEEEECCCC
Confidence 344444 5678888887744
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.2 Score=46.98 Aligned_cols=285 Identities=11% Similarity=0.041 Sum_probs=149.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCC----------------CCCceEEEEE-ECCeEEEEcC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMP----------------DAAQVVAAVF-YKGRIIYSDA 76 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~----------------~~~~p~~lav-~~~~ly~td~ 76 (377)
..+.++++.+++..|... ..+.+...+.... ...+.... .......+++ .++....+-.
T Consensus 65 ~~V~~v~fspdg~~la~g--~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SCCCEEEECTTSSEEEEE--CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEE--cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 356788888887766443 3467777776444 44442000 0012456777 3445555555
Q ss_pred CCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 77 NDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 77 ~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
.++.|...+ .+++....+..... +..+.+ +++.. .| +
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~p~~~---------------------------------------~l-~ 181 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPSGD---------------------------------------KL-V 181 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSS---------------------------------------EE-E
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEE-cCCCC---------------------------------------EE-E
Confidence 677888888 55555555543333 444443 22221 23 3
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
+....+.|+..++..... ...+.....+..+++.+.++.++.+-...+.|...++....................
T Consensus 182 s~s~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 182 SGSGDRTVRIWDLRTGQC-----SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp EEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred EecCCCcEEEEECCCCee-----EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC
Confidence 333344688888765532 222223345778888885666666655678888888764332221110000000122
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe------------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY------------RYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~------------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..+.++++.+.+. +..+-...++|.+.++.... +.............+++.|...+|.-.. ....
T Consensus 257 ~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~ 333 (393)
T 1erj_A 257 DSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRG 333 (393)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTSE
T ss_pred CCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe--CCCe
Confidence 3478899987544 44565666788888875421 1112222344567888888655555443 2466
Q ss_pred EEEEecCCCCeEEEEecCCCCceEEEEeCC-----CCEEEEEEeCCCCeEEEEEc
Q psy5792 303 IARAGLDGKKQTILAQEIIMPIKDITLDRK-----NKRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 303 I~r~~ldG~~~~~l~~~~~~~P~glalD~~-----~~~LYw~d~~~~~~i~~~~~ 352 (377)
|...++........+...-.....+++... ++.++.+-. ..++|..-++
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs-~Dg~i~iW~~ 387 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIWKY 387 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE-TTSEEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC-CCCcEEECcc
Confidence 776666544433333322234455665431 355566655 5555544443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.19 Score=46.55 Aligned_cols=190 Identities=10% Similarity=0.047 Sum_probs=118.8
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
+|+.+. ..+.|+..++..... ...... .....+.++++.+.++.++++-...+.|...++.+.....+...
T Consensus 88 ~l~s~~-~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 159 (383)
T 3ei3_B 88 TVAVGS-KGGDIILWDYDVQNK---TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT---- 159 (383)
T ss_dssp EEEEEE-BTSCEEEEETTSTTC---EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECC----
T ss_pred EEEEEc-CCCeEEEEeCCCccc---ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEecc----
Confidence 344443 334588888876644 222222 24456889999885555555555678999999987444444330
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
...-..+..+++.+.+. ++++-...+.|.+.++++.....+.. ......+++++|...+++.+-. ....|...++.
T Consensus 160 -~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~ 235 (383)
T 3ei3_B 160 -DSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLR 235 (383)
T ss_dssp -CCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGG
T ss_pred -CCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCCEEEEecc-CCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCC
Confidence 01113478999997555 44555566899999998776655543 3566899999997763555443 24677777765
Q ss_pred C-----CCeEEEEecCCCCceEEEEeC-CCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 310 G-----KKQTILAQEIIMPIKDITLDR-KNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 310 G-----~~~~~l~~~~~~~P~glalD~-~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
. .-...+ . .-.....+++++ ....|+ +-. ..+.|...++..+.
T Consensus 236 ~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~~l~-~~~-~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 236 NIKDKNSYIAEM-P-HEKPVNAAYFNPTDSTKLL-TTD-QRNEIRVYSSYDWS 284 (383)
T ss_dssp GCCSTTCEEEEE-E-CSSCEEEEEECTTTSCEEE-EEE-SSSEEEEEETTBTT
T ss_pred CCCcccceEEEe-c-CCCceEEEEEcCCCCCEEE-EEc-CCCcEEEEECCCCc
Confidence 3 222222 2 235678899987 445554 445 57888888876443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.34 Score=49.43 Aligned_cols=145 Identities=8% Similarity=0.067 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC---CCcEEEEEcCCCCc---EEEEeccccCCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID---HGTISRTHRDGTGR---ENIIEYVETGDPTPV 234 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~---~~~I~~~~~~G~~~---~~i~~~~~~~~~~~~ 234 (377)
.|+.++++....+ ...+.+ ........ +++.++.||+.... ..+|+++++++... +.++. ..-
T Consensus 260 ~i~~~d~~~~~~~-~~~l~~-~~~~~~~~--~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-------~~~ 328 (693)
T 3iuj_A 260 RLYVKDLSQENAP-LLTVQG-DLDADVSL--VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-------ERQ 328 (693)
T ss_dssp EEEEEETTSTTCC-CEEEEC-SSSSCEEE--EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-------CCS
T ss_pred EEEEEECCCCCCc-eEEEeC-CCCceEEE--EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-------CCC
Confidence 4888888655321 112221 11111122 33447888876533 46899999987554 55554 222
Q ss_pred CCcceEEEeccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC--CCCeEEEEecCC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG--KIPLIARAGLDG 310 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g--~~~~I~r~~ldG 310 (377)
... .+.+.++.|+++.... .+|.+.+++|...+.+.........++..++....|+++-.+ ..+.|++.++++
T Consensus 329 ~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 329 QVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp SCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred CEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 222 5555588888875443 479999999887655532222233455666777788877532 357999999987
Q ss_pred CCeEEEEec
Q psy5792 311 KKQTILAQE 319 (377)
Q Consensus 311 ~~~~~l~~~ 319 (377)
...+.+...
T Consensus 406 g~~~~l~~~ 414 (693)
T 3iuj_A 406 GAISLYRAS 414 (693)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEEeC
Confidence 666665543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.54 Score=50.97 Aligned_cols=225 Identities=8% Similarity=0.060 Sum_probs=132.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE---CCeEEEEcCCCCceEEEc-CCCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY---KGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~---~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
..+.++++.+.+..|... +..+.|...|+... ..++. ........+++. +..+..+-..++.|...+ .+++
T Consensus 658 ~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATC-SADKKVKIWDSATGKLVHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCEEEEEEecCCCEEEEE-eCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 356778888876666443 45678888888655 55554 445566777773 344556656677888888 5665
Q ss_pred ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
....+..... +..+.+ +++.. .+++....|.|+..++.
T Consensus 735 ~~~~~~~h~~~v~~~~~-sp~~~----------------------------------------~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRF-SPDDE----------------------------------------LLASCSADGTLRLWDVR 773 (1249)
T ss_dssp EEEEECCCSSCEEEEEE-CSSTT----------------------------------------EEEEEESSSEEEEEEGG
T ss_pred hhheecCCCCCEEEEEE-ecCCC----------------------------------------EEEEEECCCeEEEEeCC
Confidence 5555543333 444443 22221 23333333357666665
Q ss_pred CCCceeeEEEE-----------ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEE-EEeccccCCCCCCCC
Q psy5792 169 KNESKVTQVLG-----------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGREN-IIEYVETGDPTPVDQ 236 (377)
Q Consensus 169 ~~~~~~~~~~~-----------~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~-i~~~~~~~~~~~~~~ 236 (377)
.... ...+. +......+..+++.+.+..+..+. .+.|...++....... +.. .....
T Consensus 774 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~-------~~~~~ 842 (1249)
T 3sfz_A 774 SANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHT-------GHHST 842 (1249)
T ss_dssp GTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEEC-------SSSSC
T ss_pred CCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcC-------CCCCc
Confidence 4321 01100 000111345667777677777665 4678888876543322 222 23445
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+..+++.+.+. +..+-...+.|.+.+++................++++.|.+..|+.+.
T Consensus 843 v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 843 IQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp CCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence 88899997544 555556667899999987765555555566789999999666666554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.19 Score=45.54 Aligned_cols=239 Identities=9% Similarity=-0.038 Sum_probs=131.0
Q ss_pred cCCccccccCCC---CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CC
Q psy5792 16 GAVASTLKPQSG---PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 16 ~~~~~~~~d~~~---~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~ 87 (377)
..+.+++..+.. +.+.++-...+.|...+++.. ...+. ........+++. ++.++++-..++.|...+ .+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 345667777663 345566667788999998755 55553 455667888883 556666666678888888 56
Q ss_pred CCceEEEe---cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 88 GSNSTVLR---NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 88 g~~~~~~~---~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
++....+. .... +..+.+ +++.. .++.+. ..+.|+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~---------------------------------------~l~~~~-~dg~i~ 186 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADY-DLLGE---------------------------------------KIMSCG-MDHSLK 186 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEE-CTTSS---------------------------------------EEEEEE-TTSCEE
T ss_pred CeEEEEecccccccCceeEEEE-CCCCC---------------------------------------EEEEec-CCCCEE
Confidence 65555552 1112 444443 22211 233333 233577
Q ss_pred EEEcCCCCcee--e---------------------EEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc
Q psy5792 164 GIKYNKNESKV--T---------------------QVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR 219 (377)
Q Consensus 164 ~~~l~~~~~~~--~---------------------~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~ 219 (377)
..++....... . ...... .....+..++++ ++.| ++-...+.|...++.....
T Consensus 187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI-LSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE-EEECSSSEEEEEEESSTTC
T ss_pred EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE-EEEecCCEEEEEeCCCccc
Confidence 77765321100 0 000000 023346677777 4444 4444578888888764321
Q ss_pred ------------EEEEeccccCCCCCCCCcceEEEeccC-CeEEEEcCCCCEEEEEEcCCCe----EEEEeeCC--CCCc
Q psy5792 220 ------------ENIIEYVETGDPTPVDQFTDIAVDWIA-QNIYWSDPKENVIEVARLTGQY----RYVLISGG--VDQP 280 (377)
Q Consensus 220 ------------~~i~~~~~~~~~~~~~~p~~iavD~~~-~~lYwtd~~~~~I~~~~~~g~~----~~~l~~~~--~~~P 280 (377)
..+... . .....+..+++.+.. +++.++-...+.|.+.+++... ....+... ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~--~---~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 338 (366)
T 3k26_A 264 DIDKIKPSESNVTILGRF--D---YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI 338 (366)
T ss_dssp CGGGCCTTCCCEEEEEEE--E---CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCE
T ss_pred cccccccCCcchheeccc--c---ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCce
Confidence 111110 0 122346777787651 4555565667889999998642 11122222 3567
Q ss_pred eeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 281 SALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 281 ~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
.+++++|...+|..+.. ...|...+
T Consensus 339 ~~~~~s~~~~~l~s~~~--dg~i~iwd 363 (366)
T 3k26_A 339 RQTSFSRDSSILIAVCD--DASIWRWD 363 (366)
T ss_dssp EEEEECTTSSEEEEEET--TSEEEEEE
T ss_pred EEEEeCCCCCeEEEEeC--CCEEEEEE
Confidence 89999986666665543 34555444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.34 Score=49.77 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=70.8
Q ss_pred CCCCEEEEEEcC---CCcEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CEEEEEEcCC
Q psy5792 194 AAEDYIYWVDID---HGTISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NVIEVARLTG 266 (377)
Q Consensus 194 ~~~~~ly~sd~~---~~~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~I~~~~~~g 266 (377)
+.++.||+.... ..+|+++++++. ..+.++. ..-....+++++ ++.|+++.... .+|.+.+++|
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------ESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------CCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC
Confidence 448888887542 457999999863 3445554 222224455554 78888875443 4788888888
Q ss_pred CeEEEEeeCCCCCceeEEEcCCCCeEEEEec--CCCCeEEEEecCCCCeEE
Q psy5792 267 QYRYVLISGGVDQPSALAVDPESGYLFWSES--GKIPLIARAGLDGKKQTI 315 (377)
Q Consensus 267 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~--g~~~~I~r~~ldG~~~~~ 315 (377)
+..+.+.........+++.+|....|+++-. ...+.|++.++++...+.
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence 7555443212334567888887777776643 234689999987655443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.065 Score=55.35 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=134.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEE-eCCCCCceEEEEE-EC--CeEEEEcCCCCceEEEc-CCCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVV-SMPDAAQVVAAVF-YK--GRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~-~~~~~~~p~~lav-~~--~~ly~td~~~~~I~~~~-~~g~ 89 (377)
+.+.+++.++.++.|+.. ...+.|...++.+. ...+. .........++++ .. +...++-..++.|...+ .+++
T Consensus 10 ~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp CCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred ceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 457788888877666544 45788998888643 22221 1244455678888 33 55555556678888888 4443
Q ss_pred c--eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 90 N--STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 90 ~--~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
. ...+..... +..+.+ +++.. ...++.+. ..|.|+..+
T Consensus 89 ~~~~~~~~~h~~~V~~v~~-sp~~~-------------------------------------~~~l~sgs-~dg~I~vwd 129 (753)
T 3jro_A 89 WSQIAVHAVHSASVNSVQW-APHEY-------------------------------------GPLLLVAS-SDGKVSVVE 129 (753)
T ss_dssp EEEEEEECCCSSCEEEEEE-CCGGG-------------------------------------CSEEEEEE-TTSEEEEEE
T ss_pred ccccccccCCCCCeEEEEE-CCCCC-------------------------------------CCEEEEEe-CCCcEEEEE
Confidence 2 222222222 333333 22100 01333333 344688888
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEECC------------CCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCCCC
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHAA------------EDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDPTP 233 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~~------------~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~~~ 233 (377)
+..... ............+..+++++. ++.++.+-..++.|...++...... .+... .. ..
T Consensus 130 l~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~---~h 203 (753)
T 3jro_A 130 FKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LE---GH 203 (753)
T ss_dssp CCSSSC--CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE-EC---CC
T ss_pred eecCCC--cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee-ec---CC
Confidence 865532 111111233456788888874 2444555556788888877643221 11110 00 22
Q ss_pred CCCcceEEEeccC--CeEEEEcCCCCEEEEEEcCCCeE---EEEee--CCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 234 VDQFTDIAVDWIA--QNIYWSDPKENVIEVARLTGQYR---YVLIS--GGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 234 ~~~p~~iavD~~~--~~lYwtd~~~~~I~~~~~~g~~~---~~l~~--~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
-..+.++++.+.. +.+..+-...+.|.+.++..... ..+.. .......+++++|...+|+.+.. .+.|...
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--Dg~I~vw 281 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLW 281 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS--SSCEECC
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC--CCEEEEE
Confidence 3457889998753 66667766678888888876421 11111 12345678999996666655543 3556555
Q ss_pred ecC
Q psy5792 307 GLD 309 (377)
Q Consensus 307 ~ld 309 (377)
+++
T Consensus 282 d~~ 284 (753)
T 3jro_A 282 KEN 284 (753)
T ss_dssp BCC
T ss_pred ecC
Confidence 554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.90 E-value=0.26 Score=45.48 Aligned_cols=191 Identities=7% Similarity=0.002 Sum_probs=109.9
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCC------CceEEEEEE----CCCCE-EEEEEcCCCcEEEEEcCC-------CCcE
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKV------SLAAKVDFH----AAEDY-IYWVDIDHGTISRTHRDG-------TGRE 220 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~------~~~~~l~~d----~~~~~-ly~sd~~~~~I~~~~~~G-------~~~~ 220 (377)
.+.|+..++..........+..+... ..+..+++. +.+.. |+.+. ..+.|...++.. ....
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceee
Confidence 34577777754431000012222333 668899999 76777 55554 567777777654 2222
Q ss_pred -----EEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC---C---CCCceeEEEcCCC
Q psy5792 221 -----NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG---G---VDQPSALAVDPES 289 (377)
Q Consensus 221 -----~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~---~---~~~P~~iavdp~~ 289 (377)
.+... .......-..+.++++.+.+ ++++-...+.|.+.++........+.. . ......++++|..
T Consensus 169 ~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 169 WSPTLELQGT-VESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp CCCEEEEEEE-ECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred ccCcceeeee-eccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 22100 00000234458899999754 666767778999999986554444443 2 4567999999976
Q ss_pred CeEEEEecCCC---CeEEEEecCCCCeEEEEec-------------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 290 GYLFWSESGKI---PLIARAGLDGKKQTILAQE-------------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 290 g~lywtd~g~~---~~I~r~~ldG~~~~~l~~~-------------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.+|+.+.. . ..|...++........+.. .-.....+++.+.+..|+ +-. ..+.|...++.
T Consensus 246 ~~l~~~~~--d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-~dg~i~iwd~~ 321 (397)
T 1sq9_A 246 SLLAIAHD--SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAG-WDGKLRFWDVK 321 (397)
T ss_dssp TEEEEEEE--ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE-EEE-TTSEEEEEETT
T ss_pred CEEEEEec--CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE-EEe-CCCeEEEEEcC
Confidence 66666543 3 5788888764443333332 234567899986555554 444 57888888887
Q ss_pred CCce
Q psy5792 354 GGSK 357 (377)
Q Consensus 354 G~~~ 357 (377)
.+..
T Consensus 322 ~~~~ 325 (397)
T 1sq9_A 322 TKER 325 (397)
T ss_dssp TTEE
T ss_pred CCce
Confidence 5433
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.24 Score=44.55 Aligned_cols=242 Identities=11% Similarity=0.068 Sum_probs=137.3
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
......+|++ .++.+..+-..++.|...+ .++.....+..... ...+.+ .++.+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~-~~~~~---------------------- 68 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF-IARKN---------------------- 68 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-EGGGT----------------------
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEE-eCCCC----------------------
Confidence 3445677888 3444555555667788888 55655555543333 333332 33222
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
++++....+.|+..++..... +..+ .....+.++++.+.+..|. +-...+.|...
T Consensus 69 ------------------~l~s~s~d~~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~lW 124 (304)
T 2ynn_A 69 ------------------WIIVGSDDFRIRVFNYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLW 124 (304)
T ss_dssp ------------------EEEEEETTSEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSSSEEE-EEETTSCEEEE
T ss_pred ------------------EEEEECCCCEEEEEECCCCcE-----EEEEeCCCCcEEEEEEcCCCCEEE-EECCCCeEEEE
Confidence 333333344688888876533 1112 2334578999998666655 44467888888
Q ss_pred EcCCCC-cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE-EEEeeCCCCCceeEEEcCC-C
Q psy5792 213 HRDGTG-RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR-YVLISGGVDQPSALAVDPE-S 289 (377)
Q Consensus 213 ~~~G~~-~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~-~ 289 (377)
++.... ...... ..-..+..+++.+..+.++.+-...++|.+-++..... ..+..........+++.|. +
T Consensus 125 d~~~~~~~~~~~~-------~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 125 NWENNWALEQTFE-------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp EGGGTTEEEEEEC-------CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred ECCCCcchhhhhc-------ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence 886432 222333 23345788999876677777877778999999865432 2333322233456666653 2
Q ss_pred C-eEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 290 G-YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 290 g-~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
+ +|.-+. ....|...++........+.........+++.+... +..+-. ..++|..-+.....
T Consensus 198 ~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s-~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 198 KPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGS-EDGTLKIWNSSTYK 261 (304)
T ss_dssp CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-EEEEEE-TTSCEEEEETTTCC
T ss_pred CCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC-EEEEEc-CCCeEEEEECCCCc
Confidence 3 444333 246777777764433332332234566788876544 444555 56777777776443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.044 Score=55.88 Aligned_cols=115 Identities=4% Similarity=-0.080 Sum_probs=67.0
Q ss_pred cceEEEeccCCeEEEE--cCCC--CEEEEEE----cCCCeEEEEe----eCCCCC-----ceeEEEcCCCCeEEEE-e-c
Q psy5792 237 FTDIAVDWIAQNIYWS--DPKE--NVIEVAR----LTGQYRYVLI----SGGVDQ-----PSALAVDPESGYLFWS-E-S 297 (377)
Q Consensus 237 p~~iavD~~~~~lYwt--d~~~--~~I~~~~----~~g~~~~~l~----~~~~~~-----P~~iavdp~~g~lywt-d-~ 297 (377)
...+++-+. +.+.++ +... .+|.+.+ +++.....+. ...-.. +..++..|....||+. . .
T Consensus 255 ~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 255 FSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred EEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 456677665 555555 3332 3688888 6654443333 111111 1267888877777663 2 2
Q ss_pred CCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCC------CCeEEEEEccCC
Q psy5792 298 GKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVG------SNVLESMDYSGG 355 (377)
Q Consensus 298 g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~------~~~i~~~~~~G~ 355 (377)
....+|+..++++...+.+.... ....++... .+++||++.. . ...++.++.+++
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~-~~v~~~~~~-d~~~i~~~~~-~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGK-WEAINIFRV-TQDSLFYSSN-EFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSS-SCEEEEEEE-CSSEEEEEES-CGGGCTTCBEEEEEECSSS
T ss_pred CCceEEEEEECCCCceEecccCc-eEEEEEEEE-eCCEEEEEEe-cCCCCCceEEEEEEeCCCC
Confidence 22458999998887655544322 223344444 6788998876 3 357888888654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.3 Score=44.63 Aligned_cols=252 Identities=8% Similarity=0.062 Sum_probs=141.2
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCC
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESK 125 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~ 125 (377)
++++. .+.....++++ .++.+..+-..++.|...+ .+++....+..... +..+++ +++..
T Consensus 48 ~~~l~--gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~-s~~~~-------------- 110 (340)
T 1got_B 48 RRTLR--GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY-APSGN-------------- 110 (340)
T ss_dssp EEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEE-CTTSS--------------
T ss_pred heeec--CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEE-CCCCC--------------
Confidence 44443 55566788888 4555666666677888888 66665555543322 333332 23221
Q ss_pred ceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEc
Q psy5792 126 VQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDI 204 (377)
Q Consensus 126 Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~ 204 (377)
+++ +....+.|+..++...... ......+ .....+..+.+.. ++.+. +-.
T Consensus 111 -------------------------~l~-s~~~d~~v~iw~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~-~~~l~-s~s 161 (340)
T 1got_B 111 -------------------------YVA-CGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRFLD-DNQIV-TSS 161 (340)
T ss_dssp -------------------------EEE-EEETTCEEEEEETTTCSBS-CEEEEEEECCSSCEEEEEEEE-TTEEE-EEE
T ss_pred -------------------------EEE-EEeCCCeEEEEECccCCCc-ceeEEEecCCCccEEEEEECC-CCcEE-EEE
Confidence 333 3333345777777544210 0111111 1233456666665 45544 444
Q ss_pred CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEE
Q psy5792 205 DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALA 284 (377)
Q Consensus 205 ~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~ia 284 (377)
..+.|...++.......... .....+.++++.+ .++++.+-...+.|...++........+........+++
T Consensus 162 ~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~ 233 (340)
T 1got_B 162 GDTTCALWDIETGQQTTTFT-------GHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233 (340)
T ss_dssp TTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEc-------CCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence 56788888886433322332 2344578899987 456667777778899999876554444444455678999
Q ss_pred EcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec-C-CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 285 VDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-I-IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 285 vdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~-~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
++|...+|..+.. ...|...++........... . ......+++.+.+. +..+-. ..+.|...+...+...
T Consensus 234 ~~p~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~-~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 234 FFPNGNAFATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGY-DDFNCNVWDALKADRA 305 (340)
T ss_dssp ECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEE-TTSEEEEEETTTCCEE
T ss_pred EcCCCCEEEEEcC--CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC-EEEEEC-CCCeEEEEEcccCcEe
Confidence 9996555554442 46777777764433222221 1 12456788876544 444445 5677877776544433
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.64 Score=47.95 Aligned_cols=274 Identities=8% Similarity=0.005 Sum_probs=149.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe------CCC--CCceEEEEEE-CCeEEEEcCCCCceEEEcC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS------MPD--AAQVVAAVFY-KGRIIYSDANDGNIRSINL 86 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~------~~~--~~~p~~lav~-~~~ly~td~~~~~I~~~~~ 86 (377)
.+.++..|..+ . .|+-+..+-|.+++.... .+.+.. ... .....+|+.. ++.||+... .+.|.+++.
T Consensus 314 ~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~~Gl~~~~~ 390 (781)
T 3v9f_A 314 SARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTD-GGGINVFEN 390 (781)
T ss_dssp CEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEB-SSCEEEEET
T ss_pred eEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeC-CCcEEEEEC
Confidence 45677778653 4 466665666899988776 554421 011 2345667764 467777642 356888774
Q ss_pred CCCceEEEec--CC--C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC-CCC
Q psy5792 87 DGSNSTVLRN--NA--G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN-SGY 160 (377)
Q Consensus 87 ~g~~~~~~~~--~~--~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~-~~~ 160 (377)
.....+.+.. .. . +.++.. . .+..|.++.. .+
T Consensus 391 ~~~~~~~~~~~~~~~~~~v~~i~~--------------------------d---------------~~g~lWigt~~~G- 428 (781)
T 3v9f_A 391 GKRVAIYNKENRELLSNSVLCSLK--------------------------D---------------SEGNLWFGTYLGN- 428 (781)
T ss_dssp TEEEEECC-----CCCSBEEEEEE--------------------------C---------------TTSCEEEEETTEE-
T ss_pred CCCeEEEccCCCCCCCcceEEEEE--------------------------C---------------CCCCEEEEeccCC-
Confidence 3221111110 00 0 111111 0 1123555543 34
Q ss_pred eEEEEEcCCCCceeeEEEEec--CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPL--SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
|.+++...... . .... .....+.++..|. ++.||+... +.|++++.+....+.+...... ......+.
T Consensus 429 -l~~~~~~~~~~---~-~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~--~~~~~~i~ 498 (781)
T 3v9f_A 429 -ISYYNTRLKKF---Q-IIELEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLASKKVIHHYDTSNS--QLLENFVR 498 (781)
T ss_dssp -EEEECSSSCEE---E-ECCSTTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESSSSSCCEEECTTTS--SCSCSCEE
T ss_pred -EEEEcCCCCcE---E-EeccCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCCCCeEEecccCccc--ccccceeE
Confidence 66665543311 1 1111 1224577888776 678888764 6799998875444444321000 00124578
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee-CCC--CCceeEEEcCCCCeEEEEecCCCCeE-EEEecCCCCeE
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GGV--DQPSALAVDPESGYLFWSESGKIPLI-ARAGLDGKKQT 314 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~-~~~--~~P~~iavdp~~g~lywtd~g~~~~I-~r~~ldG~~~~ 314 (377)
+|+.|. .++|+++... +-+.+.+.++...+.+.. .++ ....+|+.|+ +|.|+++.. ..+ .+.+......+
T Consensus 499 ~i~~d~-~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T~---~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 499 SIAQDS-EGRFWIGTFG-GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQMWLATG---EGLVCFPSARNFDYQ 572 (781)
T ss_dssp EEEECT-TCCEEEEESS-SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-TSCEEEEET---TEEEEESCTTTCCCE
T ss_pred EEEEcC-CCCEEEEEcC-CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCCEEEEEC---CCceEEECCCCCcEE
Confidence 999994 6788776543 348888887665444432 122 3457889986 788888763 355 77766544433
Q ss_pred EEEec-CC--CCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 315 ILAQE-II--MPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 315 ~l~~~-~~--~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.+... .+ ....+++.| .+++||++-. +.|.+++.+..
T Consensus 573 ~~~~~~gl~~~~i~~i~~d-~~g~lW~~t~---~Gl~~~~~~~~ 612 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISED-KNGNIWASTN---TGISCYITSKK 612 (781)
T ss_dssp EECGGGTCSCCCCCEEEEC-SSSCEEEECS---SCEEEEETTTT
T ss_pred EccccCCCCCceEEEEEEC-CCCCEEEEcC---CceEEEECCCC
Confidence 33222 12 245688888 4677877644 34777777643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.36 Score=44.93 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=111.1
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEE---ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEecccc
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLG---PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVET 228 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~ 228 (377)
+++....+.|+..++..... ..... +......+..+++...++.++.+-...+.|...++... .......
T Consensus 173 l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---- 246 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---- 246 (380)
T ss_dssp EEEECTTSCEEEECTTTCCE--EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC----
T ss_pred EEEECCCCcEEEEEcCCCcE--EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC----
Confidence 44444444687777765433 11110 01123457788887767777777777889998888622 2222222
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-------CCCceeEEEcCCCCeEEEEecCCCC
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-------VDQPSALAVDPESGYLFWSESGKIP 301 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-------~~~P~~iavdp~~g~lywtd~g~~~ 301 (377)
..-..+.++++.+ .+..+.+-...++|.+.++............ .....++++.|...+|+-.. ...
T Consensus 247 ---~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg 320 (380)
T 3iz6_a 247 ---GHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--SNG 320 (380)
T ss_dssp ---CCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--TTS
T ss_pred ---CcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--CCC
Confidence 2344588999987 4556677777889999999866544333221 12257899998665555543 256
Q ss_pred eEEEEecCCCCeE-EEEe---cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 302 LIARAGLDGKKQT-ILAQ---EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 302 ~I~r~~ldG~~~~-~l~~---~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.|...++...... .+.. ..-.....+++.+.+..| .+-. ..++|..-++.+.
T Consensus 321 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~sgs-~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL-CTGS-WDKNLKIWAFSGH 376 (380)
T ss_dssp CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE-EEEC-TTSCEEEEECCSS
T ss_pred CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE-EEee-CCCCEEEEecCCC
Confidence 7777776543332 2211 112346788887655544 4444 5667776677643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.74 E-value=0.29 Score=43.76 Aligned_cols=265 Identities=10% Similarity=0.044 Sum_probs=149.3
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
..+.++++.+.+++|+ +-+..+.|...++... ...+. ........+++ .++.+.++-..++.|...+ .+++..
T Consensus 24 ~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp SCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcccchhhc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 4678888988766654 4455678888888555 44442 44455778888 3445555555667888888 566655
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+.+ +++.. ++++....+.|+..++...
T Consensus 101 ~~~~~~~~~v~~~~~-~~~~~----------------------------------------~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 101 KTLKGHSNYVFCCNF-NPQSN----------------------------------------LIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EEEECCSSCEEEEEE-CSSSS----------------------------------------EEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCCCEEEEEE-cCCCC----------------------------------------EEEEEeCCCcEEEEECCCC
Confidence 55543322 333332 22211 3333333345888888655
Q ss_pred CceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 171 ESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.. +..+. ....+..+++.+.+..|+.+. ..+.|...++..... ..+.. ........+++++.+..
T Consensus 140 ~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 140 KC-----LKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp CE-----EEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECC-------SSCCCEEEEEECTTSSE
T ss_pred EE-----EEEecCCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeEEec-------cCCCceEEEEECCCCCE
Confidence 33 11222 234577899988666665554 567888888864332 22222 22334667889875554
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEeeCCCCC--ceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceE
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQ--PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 326 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~--P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~g 326 (377)
| ++-...+.|...++............... .......+..+.+..+-. ....|...++........+...-.....
T Consensus 207 l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 207 I-LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp E-EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred E-EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 4 45555678999998766543333322111 122233334455555432 3567777777655443333322334567
Q ss_pred EEEeCCCCEEEEE
Q psy5792 327 ITLDRKNKRVYWC 339 (377)
Q Consensus 327 lalD~~~~~LYw~ 339 (377)
++..+....|.-+
T Consensus 285 ~~~~p~~~~l~s~ 297 (312)
T 4ery_A 285 TACHPTENIIASA 297 (312)
T ss_dssp EEECSSSSEEEEE
T ss_pred EeecCcCCceEEE
Confidence 7776655555544
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00021 Score=50.31 Aligned_cols=29 Identities=3% Similarity=-0.160 Sum_probs=24.6
Q ss_pred cCCC-cCCCCCCceeccccCCC-ccc---cCCcC
Q psy5792 115 MGIK-YNKNESKVQQVLGPLSK-VSL---AAKVD 143 (377)
Q Consensus 115 ~~~~-C~~~~g~Cs~~C~~~~~-~~~---~~G~~ 143 (377)
.+.+ |..++|+|+|+|++.++ ++. +.||.
T Consensus 3 ~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~ 36 (69)
T 1kli_L 3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 36 (69)
T ss_dssp SCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEE
T ss_pred cccccccCCCCCcCCEeEcCCCCCEEEeCCCCCe
Confidence 4578 99999999999999998 576 77875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.76 Score=46.75 Aligned_cols=163 Identities=11% Similarity=0.118 Sum_probs=101.5
Q ss_pred eEEEEEECCCCEEEEEEcC---CCcEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc-CC--CCE
Q psy5792 187 AAKVDFHAAEDYIYWVDID---HGTISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD-PK--ENV 258 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~---~~~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd-~~--~~~ 258 (377)
..++.+.+.+++|+++... ...|+.+++++. ..+.+.. ....-... +++.++.||+.- .. +.+
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~ 306 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--------DLDADVSL-VDNKGSTLYLLTNRDAPNRR 306 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--------SSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--------CCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 5678888888888877542 258999998654 3344443 22222222 555578887763 32 579
Q ss_pred EEEEEcCCCeE---EEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 259 IEVARLTGQYR---YVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 259 I~~~~~~g~~~---~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
|.++++++... +.++....... .+.+.+++|+++... ...+|+..+++|...+.+.........++..++.++
T Consensus 307 l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 307 LVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred EEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCC
Confidence 99999987543 45655432222 556667888887542 245899999998765554322223334555555667
Q ss_pred EEEEEEe--CCCCeEEEEEccCCceEEEE
Q psy5792 335 RVYWCYS--VGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 335 ~LYw~d~--~~~~~i~~~~~~G~~~~~~~ 361 (377)
+|+++-. .....|+.+++.++..+.+.
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred EEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 7887654 13478999999866555443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.28 Score=44.55 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=98.8
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC----CcEEEEEcCCCCcEEEEeccccCCCCCCCCc
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH----GTISRTHRDGTGRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~----~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p 237 (377)
|..+++++... ..+ .....+.+.+.+++|+++.... ..|+.+++++...+.+.. .. . +
T Consensus 45 l~~~d~~~~~~---~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-------~~-~-~ 106 (347)
T 2gop_A 45 IVIENLKNNAR---RFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-------AK-N-I 106 (347)
T ss_dssp EEEEETTTCCE---EEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-------ES-E-E
T ss_pred EEEEeCCCCce---EEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-------CC-C-c
Confidence 66666665533 111 3466778888888888876432 358889988765555544 12 2 6
Q ss_pred ceEEEeccCCeEEEEcCC--------------------------CCEEEEEEcCCCeE-EEEeeCCCCCceeEEEcCCCC
Q psy5792 238 TDIAVDWIAQNIYWSDPK--------------------------ENVIEVARLTGQYR-YVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~--------------------------~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g 290 (377)
.+++..+.++.|+++... ..+|.+.++++... +.+.. . ....++..|..
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg- 182 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-
T ss_pred cceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-
Confidence 777777777778877421 35799999987765 55544 2 67889999855
Q ss_pred eEEEEecCC-------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCC-------CCeEEEEE
Q psy5792 291 YLFWSESGK-------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVG-------SNVLESMD 351 (377)
Q Consensus 291 ~lywtd~g~-------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~-------~~~i~~~~ 351 (377)
.+|.+.... ...|+..+ .|. .+.+... .....+ .+.+++|+++.. . ...|+.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~~~--spdg~~l~~~~~-~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFYAV--DSDGERILLYGK-PEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEEEE--EECSSCEEEEEC-CSSSCCCSSCEEEEEC
T ss_pred EEEEEecccccccccccccEEEeC-CCc-eEEeccC--cceeeE--CCCCCEEEEEEc-cccCCccccceEEEEC
Confidence 555554321 34788888 433 3344332 222222 556777877764 3 35788877
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.06 Score=49.72 Aligned_cols=177 Identities=9% Similarity=-0.046 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCC-ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC----cEEEEeccccCCCCCC
Q psy5792 160 YDIMGIKYNKNE-SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG----RENIIEYVETGDPTPV 234 (377)
Q Consensus 160 ~~I~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~----~~~i~~~~~~~~~~~~ 234 (377)
+.|+..++.... . ............+..+++.+.+..|+... ..+.|...+++... ...+.. ..-
T Consensus 77 ~~v~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-------~h~ 146 (377)
T 3dwl_C 77 RNAYVYEKRPDGTW--KQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKR-------PLR 146 (377)
T ss_dssp SSEEEC------CC--CCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECS-------SCC
T ss_pred CeEEEEEcCCCCce--eeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeec-------ccC
Confidence 347777776543 1 01122222345578899988666666555 46778777776433 222221 134
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe---------------EEEEee--CCCCCceeEEEcCCCCeEEEEec
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY---------------RYVLIS--GGVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~---------------~~~l~~--~~~~~P~~iavdp~~g~lywtd~ 297 (377)
..+.++++.+.+ ++..+-...+.|...++.... ...++. ........++++|...+|+....
T Consensus 147 ~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 147 STILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp SCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred CCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence 458899998754 444555555778888874110 111111 23445789999997776776653
Q ss_pred CCCCeEEEEecCCCCe-----EEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 298 GKIPLIARAGLDGKKQ-----TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 298 g~~~~I~r~~ldG~~~-----~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
...|...++..... ..+.. .......+++.+. +++..+-. . +.+.....+
T Consensus 226 --d~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~-~-~~~~~~~~~ 280 (377)
T 3dwl_C 226 --DSSVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANE-SAIVAAGY-N-YSPILLQGN 280 (377)
T ss_dssp --TTEEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEET-TEEEEEES-S-SSEEEECCC
T ss_pred --CCcEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCC-CCEEEEEc-C-CcEEEEEeC
Confidence 45666666654332 22222 2345678888765 44444433 3 334455554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.58 Score=44.26 Aligned_cols=171 Identities=11% Similarity=0.019 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
+.|+..++..... +..+. ....+.+++++ +..++... ..+.|...++.......... .....+.
T Consensus 259 g~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-------~~~~~v~ 323 (445)
T 2ovr_B 259 FMVKVWDPETETC-----LHTLQGHTNRVYSLQFD--GIHVVSGS-LDTSIRVWDVETGNCIHTLT-------GHQSLTS 323 (445)
T ss_dssp SCEEEEEGGGTEE-----EEEECCCSSCEEEEEEC--SSEEEEEE-TTSCEEEEETTTCCEEEEEC-------CCCSCEE
T ss_pred CEEEEEECCCCcE-----eEEecCCCCceEEEEEC--CCEEEEEe-CCCeEEEEECCCCCEEEEEc-------CCcccEE
Confidence 4588777765422 22222 23456777774 56665554 56888888886433322222 2233456
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-CCeE
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQT 314 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~~~~ 314 (377)
+++.+ ++++++-...+.|.+.++........+.. ......+++.++ .+|+.+.. .+.|...++.. ....
T Consensus 324 ~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~--dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 324 GMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSD--DGTVKLWDLKTGEFIR 396 (445)
T ss_dssp EEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEET--TSEEEEEETTTCCEEE
T ss_pred EEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeC--CCeEEEEECCCCceee
Confidence 66665 34556666678899999865443333332 234457788864 45555542 46788777764 3334
Q ss_pred EEEec----CCCCceEEEEeCCCCEEEEEEeCCCC----eEEEEEccC
Q psy5792 315 ILAQE----IIMPIKDITLDRKNKRVYWCYSVGSN----VLESMDYSG 354 (377)
Q Consensus 315 ~l~~~----~~~~P~glalD~~~~~LYw~d~~~~~----~i~~~~~~G 354 (377)
.+... .-..+..+++++. +.+..+-. ..+ +|...+++.
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~-~~~la~~~-~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNT-KLVCAVGS-RNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSS-EEEEEEEC-SSSSSCCEEEEEECCC
T ss_pred eeeccccCCCCceEEEEEecCC-EEEEEEcc-cCCCCccEEEEEECCC
Confidence 44221 1244677888643 33333333 333 377777664
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.52 Score=42.99 Aligned_cols=258 Identities=7% Similarity=-0.045 Sum_probs=142.1
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCc-
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSN- 90 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~- 90 (377)
+.+.+++..+++..| .+-+..+.|..-|.... ...+. ........+++ .++....+-..++.|...+ ..+..
T Consensus 56 ~~v~~~~~s~d~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 56 AKIYAMHWGTDSRLL-LSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp SCEEEEEECTTSSEE-EEEETTTEEEEEETTTCCEEEEEE--CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CceEEEEECCCCCEE-EEEeCCCcEEEEECCCCCcceEee--cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 356677777765444 45556788888887555 55443 34445677777 3334444444556666666 33221
Q ss_pred ---eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 91 ---STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 91 ---~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
...+..... +..+.. .+ +..++.+. ..+.|+..+
T Consensus 133 ~~~~~~~~~h~~~v~~~~~-~~----------------------------------------~~~l~s~s-~d~~i~~wd 170 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRF-LD----------------------------------------DNQIVTSS-GDTTCALWD 170 (340)
T ss_dssp CEEEEEEECCSSCEEEEEE-EE----------------------------------------TTEEEEEE-TTSCEEEEE
T ss_pred ceeEEEecCCCccEEEEEE-CC----------------------------------------CCcEEEEE-CCCcEEEEE
Confidence 111211111 222221 11 11233333 233577777
Q ss_pred cCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 167 YNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
+..... +..+. ....+.++++.+.+. ++.+-...+.|...++.......... .....+.++++.+.
T Consensus 171 ~~~~~~-----~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~-------~h~~~v~~v~~~p~ 237 (340)
T 1got_B 171 IETGQQ-----TTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFT-------GHESDINAICFFPN 237 (340)
T ss_dssp TTTTEE-----EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEEC-------CCSSCEEEEEECTT
T ss_pred CCCCcE-----EEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEc-------CCcCCEEEEEEcCC
Confidence 765422 22222 334578899988544 55555567889888886544333333 23445889999974
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP 323 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~ 323 (377)
++++.+-...++|.+.++........... .......++++|...+|..... ...|...++........+...-..
T Consensus 238 -~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~--d~~i~vwd~~~~~~~~~~~~h~~~ 314 (340)
T 1got_B 238 -GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD--DFNCNVWDALKADRAGVLAGHDNR 314 (340)
T ss_dssp -SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSC
T ss_pred -CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC--CCeEEEEEcccCcEeeEeecCCCc
Confidence 55666766778899999876554333321 1234688999996555555542 467777776544333333322244
Q ss_pred ceEEEEeCCCC
Q psy5792 324 IKDITLDRKNK 334 (377)
Q Consensus 324 P~glalD~~~~ 334 (377)
...+++.+.+.
T Consensus 315 v~~~~~s~dg~ 325 (340)
T 1got_B 315 VSCLGVTDDGM 325 (340)
T ss_dssp EEEEEECTTSS
T ss_pred EEEEEEcCCCC
Confidence 56677754333
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00065 Score=44.72 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=21.6
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
|..++++|+|+|++.++++. +.||.
T Consensus 1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~ 28 (51)
T 1kig_L 1 CSLDNGGCDQFCREERSEVRCSCAHGYV 28 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEE
T ss_pred CCCCCCCcCCEeEcCCCCeEEeCCCCcE
Confidence 66788999999999999988 77775
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.49 Score=42.23 Aligned_cols=244 Identities=11% Similarity=0.085 Sum_probs=132.6
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCC---c-EEEEEeCCCCCceEEEEEE---CCeEEEEcCCCCceEEEc-CCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEV---K-VAKVVSMPDAAQVVAAVFY---KGRIIYSDANDGNIRSIN-LDG 88 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG---~-~~~i~~~~~~~~p~~lav~---~~~ly~td~~~~~I~~~~-~~g 88 (377)
.+.++++++.+.+| .+-+..+.|...++++ . ..++. .+.....++++. .+.+..|-..++.|...+ .+|
T Consensus 11 ~V~~~~~s~~g~~l-as~s~D~~v~iw~~~~~~~~~~~~l~--gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 11 MIHDAVMDYYGKRM-ATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CEEEEEECTTSSEE-EEEETTSCEEEEEBCSSCBCCCEEEC--CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred ceEEEEECCCCCEE-EEEeCCCEEEEEecCCCCcEEEEEEc--cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 56788888876665 4445678899888864 3 44453 445556788883 256666666677888877 444
Q ss_pred C--ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 89 S--NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 89 ~--~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+ ....+..... +..+.+ +++.. ..++++....+.|+..
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~-~p~~~--------------------------------------g~~l~s~s~d~~v~~w 128 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQW-APHEY--------------------------------------GPMLLVASSDGKVSVV 128 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEE-CCGGG--------------------------------------CSEEEEEETTSEEEEE
T ss_pred ceEEEEEeecCCCceeEEEe-CcCCC--------------------------------------CcEEEEEECCCcEEEE
Confidence 3 2222322112 333332 22100 1133333333467777
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCC------------CEEEEEEcCCCcEEEEEcCCCCcE--E--EEeccccC
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAE------------DYIYWVDIDHGTISRTHRDGTGRE--N--IIEYVETG 229 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~------------~~ly~sd~~~~~I~~~~~~G~~~~--~--i~~~~~~~ 229 (377)
++..... ............+..+++.+.. +.++.+-...+.|...+++..... . ...
T Consensus 129 d~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~----- 201 (297)
T 2pm7_B 129 EFKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE----- 201 (297)
T ss_dssp EBCSSSC--BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-----
T ss_pred EecCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-----
Confidence 7764421 0011111223346677776642 345555556677777776543311 1 121
Q ss_pred CCCCCCCcceEEEeccC--CeEEEEcCCCCEEEEEEcCCC---eEEEEee--CCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 230 DPTPVDQFTDIAVDWIA--QNIYWSDPKENVIEVARLTGQ---YRYVLIS--GGVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~--~~lYwtd~~~~~I~~~~~~g~---~~~~l~~--~~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..-..+.++++.+.. +.++.+-...++|..-+++.. ....++. ........++.+|....|.-+.....-+
T Consensus 202 --~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 202 --GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp --CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred --CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 223457889988753 466677666778888887653 2233332 1223457889998666665554322346
Q ss_pred EEEEecCCC
Q psy5792 303 IARAGLDGK 311 (377)
Q Consensus 303 I~r~~ldG~ 311 (377)
|+....+|.
T Consensus 280 lw~~~~~g~ 288 (297)
T 2pm7_B 280 LWKENLEGK 288 (297)
T ss_dssp EEEECTTSC
T ss_pred EEEECCCCc
Confidence 666666654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.15 Score=48.57 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=103.6
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
..+.++++++.+..+..+-..++.|...+++......+... ...-..+.+|++.+.+++++++-...++|.+-++
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-----~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-----IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-----CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-----cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 35788999986666666655678898888875544444320 0123458899998777777788777889999999
Q ss_pred CCCeEEEEeeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 265 TGQYRYVLISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 265 ~g~~~~~l~~~~--~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
.+.....+.... ......++++|...+|..... .+.|...+++|.....+... -.....+++.+.+..++.+-.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~~wd~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~s~s- 270 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN--VGNVILLNMDGKELWNLRMH-KKKVTHVALNPCCDWFLATAS- 270 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS--SSBEEEEESSSCBCCCSBCC-SSCEEEEEECTTCSSEEEEEE-
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC--CCcEeeeccCcceeEEEecc-cceEEeeeecCCCceEEEEec-
Confidence 988766665432 223468899986555555542 56788888887543332211 234677888766666666655
Q ss_pred CCCeEEEEEcc
Q psy5792 343 GSNVLESMDYS 353 (377)
Q Consensus 343 ~~~~i~~~~~~ 353 (377)
..+.|...++.
T Consensus 271 ~d~~v~iwd~~ 281 (435)
T 4e54_B 271 VDQTVKIWDLR 281 (435)
T ss_dssp TTSBCCEEETT
T ss_pred CcceeeEEecc
Confidence 55555555543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.54 Score=48.39 Aligned_cols=187 Identities=11% Similarity=0.039 Sum_probs=103.6
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECC--CCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA--EDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETG 229 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~--~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~ 229 (377)
++....|.|+..++..... ............+..+++.+. +..++.+. ..+.|...++.... ......
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~vwdl~~~~~~~~~~~~----- 142 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTTSPIIID----- 142 (753)
T ss_dssp EEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCSSSCCCCEEEE-----
T ss_pred EEEeCCCeEEEEECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEe-CCCcEEEEEeecCCCcceeEee-----
Confidence 3333334588777766532 111222223456889999886 55555544 67888888886542 222222
Q ss_pred CCCCCCCcceEEEecc------------CCeEEEEcCCCCEEEEEEcCCCe----EEEEeeCCCCCceeEEEcCCC--Ce
Q psy5792 230 DPTPVDQFTDIAVDWI------------AQNIYWSDPKENVIEVARLTGQY----RYVLISGGVDQPSALAVDPES--GY 291 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~------------~~~lYwtd~~~~~I~~~~~~g~~----~~~l~~~~~~~P~~iavdp~~--g~ 291 (377)
.....+..+++.+. .+.++.+-...+.|.+.++.... ....+........+++++|.. +.
T Consensus 143 --~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 143 --AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp --CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred --cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 23445778888864 34555666666788888876542 112223334567899999973 44
Q ss_pred EEEEecCCCCeEEEEecCCCC---eEEEEec--CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 292 LFWSESGKIPLIARAGLDGKK---QTILAQE--IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~---~~~l~~~--~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
++.+-.. .+.|...++.... ...+... .-....++++.+.+..| .+-. ..+.|...+++
T Consensus 221 ~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~s~s-~Dg~I~vwd~~ 284 (753)
T 3jro_A 221 YLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL-ALSG-GDNKVTLWKEN 284 (753)
T ss_dssp EEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE-EEEC-SSSCEECCBCC
T ss_pred EEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE-EEEc-CCCEEEEEecC
Confidence 4444332 4566666655432 1111111 12345678887655444 4444 45667666665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.53 Score=42.50 Aligned_cols=232 Identities=8% Similarity=0.015 Sum_probs=121.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--E-CCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--Y-KGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~-~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
..+.+++..+.+..|+ +-+..+.|...+++.. ...+. ........+++ . ++.++++-..++.|...+ .+++.
T Consensus 87 ~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp SCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred CCEEEEEECcCCCEEE-EEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 3677888888666665 4455788999999887 55554 44556777877 3 445566656677888888 56655
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
...+........+... ...++.+..+ +.+...++...
T Consensus 164 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~-~~i~~~~~~~~ 200 (368)
T 3mmy_A 164 MMVLQLPERCYCADVI------------------------------------------YPMAVVATAE-RGLIVYQLENQ 200 (368)
T ss_dssp SEEEECSSCEEEEEEE------------------------------------------TTEEEEEEGG-GCEEEEECSSS
T ss_pred EEEEecCCCceEEEec------------------------------------------CCeeEEEeCC-CcEEEEEeccc
Confidence 5544422111111110 0122222221 23666666544
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCC---EEEEEEcCCCcEEEEEcCCCC----cEEEEeccccCC----CCCCCCcce
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAED---YIYWVDIDHGTISRTHRDGTG----RENIIEYVETGD----PTPVDQFTD 239 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~---~ly~sd~~~~~I~~~~~~G~~----~~~i~~~~~~~~----~~~~~~p~~ 239 (377)
.. ...............+.+..... ..+++-...+.|...+++... ...+........ ......+.+
T Consensus 201 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (368)
T 3mmy_A 201 PS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG 278 (368)
T ss_dssp CE--EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred cc--hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence 32 00111001111122222222111 223333356777777776432 112211000000 000014778
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+++.+.+..| ++-...+.|.+.++........+........+++++|...+|..+.
T Consensus 279 ~~~sp~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 279 IAFHPVHGTL-ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEecCCCEE-EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 9998755555 4555567899999987655444444455678999999777777764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.56 Score=42.48 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--------------------------CCcEEEEEc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--------------------------HGTISRTHR 214 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--------------------------~~~I~~~~~ 214 (377)
.|..+++++... ..+.... . +.++++.+.++.|+++... ...|+.+++
T Consensus 86 ~l~~~~~~~g~~---~~l~~~~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 86 EIWVADLETLSS---KKILEAK--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEEEETTTTEE---EEEEEES--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred eEEEEECCCCce---EEEEcCC--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 377777776533 2222222 2 6778888878888887532 257888888
Q ss_pred CCCCc-EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--------CCEEEEEEcCCCeEEEEeeCCCCCceeEEE
Q psy5792 215 DGTGR-ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--------ENVIEVARLTGQYRYVLISGGVDQPSALAV 285 (377)
Q Consensus 215 ~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--------~~~I~~~~~~g~~~~~l~~~~~~~P~~iav 285 (377)
++... +.+.. . .+..+++.+.+ .+|.+... ...|+..+ .|. .+.+... ..... +
T Consensus 160 ~~~~~~~~l~~--------~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~~--~ 222 (347)
T 2gop_A 160 ESEEVIEEFEK--------P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFYA--V 222 (347)
T ss_dssp TTTEEEEEEEE--------E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEEE--E
T ss_pred CCCeEEeeecC--------C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC--cceee--E
Confidence 76554 33322 1 46677777644 44444332 33688888 443 3344432 22222 3
Q ss_pred cCCCCeEEEEecC------CCCeEEEEecCCCCeEEEEecCCCCceE-EEEeCCCCEEEEEEeCCC--CeEEEEEccC
Q psy5792 286 DPESGYLFWSESG------KIPLIARAGLDGKKQTILAQEIIMPIKD-ITLDRKNKRVYWCYSVGS--NVLESMDYSG 354 (377)
Q Consensus 286 dp~~g~lywtd~g------~~~~I~r~~ldG~~~~~l~~~~~~~P~g-lalD~~~~~LYw~d~~~~--~~i~~~~~~G 354 (377)
.|.+.+|+++... ...+|+..+ .|. .+.+....-..... ++.. ++ +|++.. .. ..|+ ++ +|
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s--dg-~~~~~~-~~~~~~l~-~~-~g 292 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD--GK-VYFTLF-EEGSVNLY-IW-DG 292 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET--TE-EEEEEE-ETTEEEEE-EE-SS
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCc-eEeccccCCcccCCccEEc--Cc-EEEEEe-cCCcEEEE-Ec-CC
Confidence 7777778776532 135788888 433 33333221122333 5553 44 776644 33 3555 66 54
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.52 Score=41.59 Aligned_cols=240 Identities=14% Similarity=0.079 Sum_probs=133.9
Q ss_pred CCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 56 PDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 56 ~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
.+......+++.++..+++-..++.|...+ .++.....+..... +..+.+ +++..
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~---------------------- 72 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY-DSEKE---------------------- 72 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEE-ETTTT----------------------
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEE-CCCCC----------------------
Confidence 445566777775454455555667888888 55544444443333 444443 33222
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
+++.+. ..+.|+..++..... ...+..+ .....+..++++ ++.++.+. ..+.|...
T Consensus 73 -----------------~l~~~~-~dg~i~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~~~ 129 (313)
T 3odt_A 73 -----------------LLLFGG-KDTMINGVPLFATSG--EDPLYTLIGHQGNVCSLSFQ--DGVVISGS-WDKTAKVW 129 (313)
T ss_dssp -----------------EEEEEE-TTSCEEEEETTCCTT--SCC-CEECCCSSCEEEEEEE--TTEEEEEE-TTSEEEEE
T ss_pred -----------------EEEEec-CCCeEEEEEeeecCC--CCcccchhhcccCEEEEEec--CCEEEEEe-CCCCEEEE
Confidence 344433 334577777754422 1111112 233456778875 55665554 56778777
Q ss_pred EcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeE
Q psy5792 213 HRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 292 (377)
+ .+.. ..... .....+..+++.+..++++++-...+.|...+. +.....+..........+++.|. +.+
T Consensus 130 d-~~~~-~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~-~~~ 198 (313)
T 3odt_A 130 K-EGSL-VYNLQ-------AHNASVWDAKVVSFSENKFLTASADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVDD-GHF 198 (313)
T ss_dssp E-TTEE-EEEEE-------CCSSCEEEEEEEETTTTEEEEEETTSCEEEEET-TEEEEEECSSCSSCEEEEEEEET-TEE
T ss_pred c-CCcE-EEecc-------cCCCceeEEEEccCCCCEEEEEECCCCEEEEec-CceEEEEeccCcccEEEEEEcCC-CeE
Confidence 7 3222 22222 234457778877645666666666778888883 22333333224556789999984 555
Q ss_pred EEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCce
Q psy5792 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 293 ywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
+... ....|...++........+...-.....+++.+.+ +|+ +-. ..+.|...++..+..
T Consensus 199 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~-~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 199 ISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCG-EDRTVRIWSKENGSL 258 (313)
T ss_dssp EEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEE-TTSEEEEECTTTCCE
T ss_pred EEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEe-cCCEEEEEECCCCce
Confidence 4444 35788888887444433333324567888887654 444 444 567888888764443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.25 E-value=1.1 Score=44.68 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=106.9
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.+++..+.++.+..+-+..+.|...+.... ..++. .+.....++++ .++.++.+-..++.|...+ .+|+...
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEee
Confidence 45677777776655666677788888886554 44442 44556788898 4566777767778888888 6776655
Q ss_pred EEec-------CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 93 VLRN-------NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 93 ~~~~-------~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
.+.. ... +.++.+ +|+. ..+++....+.|+.
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~-spdg----------------------------------------~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTW-SPDG----------------------------------------TKIASASADKTIKI 265 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEE-CTTS----------------------------------------SEEEEEETTSEEEE
T ss_pred eeccccccccccCCCEEEEEE-CCCC----------------------------------------CEEEEEeCCCeEEE
Confidence 5421 111 333332 2221 23344444446777
Q ss_pred EEcCCCCceeeEEEEecC--CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE
Q psy5792 165 IKYNKNESKVTQVLGPLS--KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~--~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav 242 (377)
.++..... ... ++.. ......++.++ .+.+ .+-...+.|...+........... .....+.++++
T Consensus 266 Wd~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~~~l-~s~s~d~~i~~~~~~~~~~~~~~~-------gh~~~v~~l~~ 332 (611)
T 1nr0_A 266 WNVATLKV--EKT-IPVGTRIEDQQLGIIWT--KQAL-VSISANGFINFVNPELGSIDQVRY-------GHNKAITALSS 332 (611)
T ss_dssp EETTTTEE--EEE-EECCSSGGGCEEEEEEC--SSCE-EEEETTCCEEEEETTTTEEEEEEC-------CCSSCEEEEEE
T ss_pred EeCCCCce--eee-ecCCCCccceeEEEEEc--CCEE-EEEeCCCcEEEEeCCCCCcceEEc-------CCCCCEEEEEE
Confidence 77765422 111 1111 11223445443 3333 333356677777765433222222 23345888999
Q ss_pred eccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 243 DWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 243 D~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
.+.++.| .+-...++|..-++...
T Consensus 333 spdg~~l-~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 333 SADGKTL-FSADAEGHINSWDISTG 356 (611)
T ss_dssp CTTSSEE-EEEETTSCEEEEETTTC
T ss_pred eCCCCEE-EEEeCCCcEEEEECCCC
Confidence 8755555 44444567777776544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.59 Score=41.58 Aligned_cols=205 Identities=11% Similarity=0.037 Sum_probs=105.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc---EEEEEe-CCCCCceEEEEEEC---CeEEEEcCCCCceEEEc-CC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK---VAKVVS-MPDAAQVVAAVFYK---GRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~---~~~i~~-~~~~~~p~~lav~~---~~ly~td~~~~~I~~~~-~~ 87 (377)
+.+.+++.++.+..|. +-...+.|...+++.. .+.+.. .........|++.. +.++++-..++.|...+ ..
T Consensus 12 ~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVA-TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SCEEEEEECSSSSEEE-EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred cceeEEEEcCCCCEEE-EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 4678888888766554 4455688988888743 222210 14455678888842 55666655677888887 44
Q ss_pred CCc---------eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC
Q psy5792 88 GSN---------STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN 157 (377)
Q Consensus 88 g~~---------~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~ 157 (377)
++. ...+..... +.++.+ +++.. ..+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-------------------------------------~~~l~~~~- 131 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKF-APAHL-------------------------------------GLKLACLG- 131 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEE-CCGGG-------------------------------------CSEEEEEE-
T ss_pred CcccccccCcceeeeecccCCceeEEEE-cCCCC-------------------------------------CcEEEEec-
Confidence 421 222222112 333332 22100 11233333
Q ss_pred CCCeEEEEEcCCCCce----eeEEEE-----ecCCCCceEEEEEECC---CCEEEEEEcCCCcEEEEEcCCCCcEEEEec
Q psy5792 158 SGYDIMGIKYNKNESK----VTQVLG-----PLSKVSLAAKVDFHAA---EDYIYWVDIDHGTISRTHRDGTGRENIIEY 225 (377)
Q Consensus 158 ~~~~I~~~~l~~~~~~----~~~~~~-----~~~~~~~~~~l~~d~~---~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~ 225 (377)
..+.|+..++...... ...... +......+..+++.+. ...+..+. ..+.+............+...
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKL 210 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEEC
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeec
Confidence 3345777777543320 000000 1123345778888775 55555554 344553333333232222220
Q ss_pred cccCCCCCCCCcceEEEeccCC---eEEEEcCCCCEEEEEEcCC
Q psy5792 226 VETGDPTPVDQFTDIAVDWIAQ---NIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~~~---~lYwtd~~~~~I~~~~~~g 266 (377)
...-..+.++++.+..+ +++.+-...+.|.+.++..
T Consensus 211 -----~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 211 -----PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp -----CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred -----CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 01233578899987542 6667766677788877764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.068 Score=49.34 Aligned_cols=240 Identities=9% Similarity=-0.076 Sum_probs=119.3
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCC--
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGS-- 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~-- 89 (377)
+.+.++++.+.+..| .+-+..+.|...++++. .+.+.. .........+++. ++.++++-..++.|...+ .+++
T Consensus 12 ~~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SCCSCCEECSSSSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CcEEEEEECCCCCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 357888998876655 33345677888888765 233211 1334456788883 344455545567788877 4444
Q ss_pred -ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 90 -NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 90 -~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
....+..... +..+.+ +++. ..|+.+.. .+.|+..++
T Consensus 91 ~~~~~~~~~~~~v~~~~~-~~~~---------------------------------------~~l~~~~~-d~~i~iwd~ 129 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRW-SPNE---------------------------------------DKFAVGSG-ARVISVCYF 129 (377)
T ss_dssp CCEEECCCCSSCEEEEEC-CTTS---------------------------------------SCCEEEES-SSCEEECCC
T ss_pred eeeeEecccCCceEEEEE-CCCC---------------------------------------CEEEEEec-CCeEEEEEE
Confidence 1222221111 333332 2211 12333332 234766666
Q ss_pred CCCCceeeEEEEecC--CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC---------------cEEEEeccccCC
Q psy5792 168 NKNESKVTQVLGPLS--KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG---------------RENIIEYVETGD 230 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~--~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~---------------~~~i~~~~~~~~ 230 (377)
+.... ......+. ....+..+++.+.+..|.... ..+.|...++.... ....... .
T Consensus 130 ~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 202 (377)
T 3dwl_C 130 EQEND--WWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE----Y 202 (377)
T ss_dssp -------CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC----C
T ss_pred CCccc--ceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhc----c
Confidence 54421 00111122 345688999998666665554 45777777764211 1112210 0
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE----EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR----YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
.....+.++++.+.+..|+ +-...+.|.+.++..... ...+........++++.|.+.+| .+-. ...+...
T Consensus 203 -~~~~~v~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~--~~~~~~~ 277 (377)
T 3dwl_C 203 -PSGGWVHAVGFSPSGNALA-YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIV-AAGY--NYSPILL 277 (377)
T ss_dssp -CCSSSEEEEEECTTSSCEE-EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEE-EEES--SSSEEEE
T ss_pred -cCCceEEEEEECCCCCEEE-EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEE-EEEc--CCcEEEE
Confidence 1223478899987655554 444557888888876543 11222234456899999854444 4432 2344455
Q ss_pred ecC
Q psy5792 307 GLD 309 (377)
Q Consensus 307 ~ld 309 (377)
..+
T Consensus 278 ~~~ 280 (377)
T 3dwl_C 278 QGN 280 (377)
T ss_dssp CCC
T ss_pred EeC
Confidence 544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.3 Score=46.40 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=112.1
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
+.++.+....|.|+..+++.... ..+..+. ....+.+++|.+.++.++++-..++.|...++.+...+.+...
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~---~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--- 205 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDK---PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS--- 205 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSC---CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC---
T ss_pred CCEEEEEeCCCEEEEEECCCCCc---eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc---
Confidence 33444444445688888765543 1222222 2345789999876666666666778899999987554444430
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.........+++++. +.++++-...+.|...+++++....+. .......+++++|....++.+-.. ...|...++
T Consensus 206 --~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iwd~ 280 (435)
T 4e54_B 206 --DTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASV-DQTVKIWDL 280 (435)
T ss_dssp --SSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET-TSBCCEEET
T ss_pred --CCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecC-cceeeEEec
Confidence 011123567888864 556666667789999999887543332 234557899999987777766432 344444444
Q ss_pred CC-CCeEEEEe-c-CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 309 DG-KKQTILAQ-E-IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 309 dG-~~~~~l~~-~-~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.. .....+.. . .-.....+++.+.+..|.-+ . ..+.|...+...+.
T Consensus 281 ~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-~-~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 281 RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-D-QKSEIRVYSASQWD 329 (435)
T ss_dssp TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-E-SSSCEEEEESSSSS
T ss_pred ccccccceEEEeeeccccccceeECCCCCeeEEE-c-CCCEEEEEECCCCc
Confidence 32 21111111 1 12234667776655555544 4 46677777765443
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.00071 Score=44.95 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=21.0
Q ss_pred cCCCCCCceeccccCCC-ccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSK-VSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~-~~~---~~G~~ 143 (377)
|..++|+|+|+|++.++ ++. +.||.
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~ 30 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYS 30 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEE
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCE
Confidence 67788999999999998 566 77875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.00 E-value=1.7 Score=44.68 Aligned_cols=154 Identities=12% Similarity=-0.009 Sum_probs=91.8
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
..+.++..|. ++.||+... .+.|++++......+.+.. . ......+.+|+.|. .++||+... +.|.+.+.
T Consensus 407 ~~v~~i~~d~-~g~lWigt~-~~Gl~~~~~~~~~~~~~~~---~--~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~ 476 (781)
T 3v9f_A 407 NSVLCSLKDS-EGNLWFGTY-LGNISYYNTRLKKFQIIEL---E--KNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDL 476 (781)
T ss_dssp SBEEEEEECT-TSCEEEEET-TEEEEEECSSSCEEEECCS---T--TTCCCCEEEEEECT-TSEEEEEET--TEEEEEES
T ss_pred cceEEEEECC-CCCEEEEec-cCCEEEEcCCCCcEEEecc---C--CCCCCeEEEEEECC-CCCEEEEEC--CceEEEeC
Confidence 4577888775 577777653 4578888775432222211 0 01224578899994 677877655 56888888
Q ss_pred CCCeEEEEeeCC-----CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec-CC--CCceEEEEeCCCCEE
Q psy5792 265 TGQYRYVLISGG-----VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE-II--MPIKDITLDRKNKRV 336 (377)
Q Consensus 265 ~g~~~~~l~~~~-----~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~~--~~P~glalD~~~~~L 336 (377)
+....+.+.... ...+.+|+.|+ .|.|+++..+ ..|.+.+.++...+.+... .+ .....|..|. .++|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~--~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l 552 (781)
T 3v9f_A 477 ASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG--GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQM 552 (781)
T ss_dssp SSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS--SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-TSCE
T ss_pred CCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC--CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCCE
Confidence 764333332211 24578999996 7888888753 4588887765544333221 12 2456788874 5666
Q ss_pred EEEEeCCCCeE-EEEEccCC
Q psy5792 337 YWCYSVGSNVL-ESMDYSGG 355 (377)
Q Consensus 337 Yw~d~~~~~~i-~~~~~~G~ 355 (377)
|++- . +.+ .+.+....
T Consensus 553 Wi~T--~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 553 WLAT--G-EGLVCFPSARNF 569 (781)
T ss_dssp EEEE--T-TEEEEESCTTTC
T ss_pred EEEE--C-CCceEEECCCCC
Confidence 6554 3 344 77666544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.86 Score=41.10 Aligned_cols=182 Identities=11% Similarity=0.012 Sum_probs=108.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
++++....+.|+..++..... +..+ .....+.++++++.+..|. +-...+.|...++.+.....+..
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D~~i~vwd~~~~~~~~~~~------ 146 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQCLATLLG------ 146 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEE-----EEEEECCSSCEEEEEECTTSCEEE-EEETTSCEEEEETTSCEEEEECC------
T ss_pred EEEEEeCCCEEEEEECCCCCe-----eEEEccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeEEEEec------
Confidence 344444445688888865532 1112 2344578899988655554 44467888888887644333322
Q ss_pred CCCCCCcceEEEecc-----CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 231 PTPVDQFTDIAVDWI-----AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 231 ~~~~~~p~~iavD~~-----~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
....+..+++.+. .+.++.+-...+.|...++........+.........+++.|...+|.-+.. ...|..
T Consensus 147 --h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~--dg~i~i 222 (319)
T 3frx_A 147 --HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK--DGEIML 222 (319)
T ss_dssp --CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET--TCEEEE
T ss_pred --cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC--CCeEEE
Confidence 2334666777543 2335666666788998888776544444444556789999996555555442 467777
Q ss_pred EecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 306 AGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 306 ~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
-++........+.. -.....+++.+.+..|..+.. ..+...+++
T Consensus 223 wd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~---~~i~v~~~~ 266 (319)
T 3frx_A 223 WNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA---TGIKVFSLD 266 (319)
T ss_dssp EETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET---TEEEEEEET
T ss_pred EECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC---CCcEEEEeC
Confidence 77765443333332 245678888876666655544 335555555
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.85 E-value=1.3 Score=41.90 Aligned_cols=261 Identities=10% Similarity=0.052 Sum_probs=142.6
Q ss_pred ccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC
Q psy5792 23 KPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG 99 (377)
Q Consensus 23 ~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~ 99 (377)
+.+.+++| ++-+..+.|...++... ..++. ........+++.++.|+.+ ..++.|...+ .+|+....+.....
T Consensus 125 ~~~~g~~l-~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~h~~ 200 (445)
T 2ovr_B 125 LQFCGNRI-VSGSDDNTLKVWSAVTGKCLRTLV--GHTGGVWSSQMRDNIIISG-STDRTLKVWNAETGECIHTLYGHTS 200 (445)
T ss_dssp EEEETTEE-EEEETTSCEEEEETTTCCEEEECC--CCSSCEEEEEEETTEEEEE-ETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEEcCCEE-EEEECCCcEEEEECCCCcEEEEEc--CCCCCEEEEEecCCEEEEE-eCCCeEEEEECCcCcEEEEECCCCC
Confidence 34444444 45556788999998655 44442 4455677888876655554 4567888888 56655555543222
Q ss_pred -ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 100 -ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 100 -p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
+..+.. ++ ..++.+ ...+.|+..++..... ...+
T Consensus 201 ~v~~~~~-~~-----------------------------------------~~l~s~-s~dg~i~~wd~~~~~~--~~~~ 235 (445)
T 2ovr_B 201 TVRCMHL-HE-----------------------------------------KRVVSG-SRDATLRVWDIETGQC--LHVL 235 (445)
T ss_dssp CEEEEEE-ET-----------------------------------------TEEEEE-ETTSEEEEEESSSCCE--EEEE
T ss_pred cEEEEEe-cC-----------------------------------------CEEEEE-eCCCEEEEEECCCCcE--EEEE
Confidence 333332 11 123333 3334688888765533 1111
Q ss_pred EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 179 ~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
......+..++++ ++.++... ..+.|...++.......... .....+.++++| +..+++-...+.
T Consensus 236 --~~~~~~v~~~~~~--~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~---~~~l~~~~~d~~ 300 (445)
T 2ovr_B 236 --MGHVAAVRCVQYD--GRRVVSGA-YDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQFD---GIHVVSGSLDTS 300 (445)
T ss_dssp --ECCSSCEEEEEEC--SSCEEEEE-TTSCEEEEEGGGTEEEEEEC-------CCSSCEEEEEEC---SSEEEEEETTSC
T ss_pred --cCCcccEEEEEEC--CCEEEEEc-CCCEEEEEECCCCcEeEEec-------CCCCceEEEEEC---CCEEEEEeCCCe
Confidence 1223446677774 55555544 56888888886433222222 223346666664 444455555678
Q ss_pred EEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec---CCCCceEEEEeCCCCE
Q psy5792 259 IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE---IIMPIKDITLDRKNKR 335 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~---~~~~P~glalD~~~~~ 335 (377)
|.+.++........+........+++.+ ...|+.... .+.|...++........+.. .......++.+ .+
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~- 373 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN- 373 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS-
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC--CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC-
Confidence 9999987654433333334455667665 345555542 46777777754333222221 12335566664 33
Q ss_pred EEEEEeCCCCeEEEEEccCC
Q psy5792 336 VYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~G~ 355 (377)
+..+-. ..+.|...++..+
T Consensus 374 ~l~s~~-~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 374 FVITSS-DDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEEE-TTSEEEEEETTTC
T ss_pred EEEEEe-CCCeEEEEECCCC
Confidence 444444 5677777777644
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0013 Score=44.75 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.8
Q ss_pred cCCCCCCceeccccCC-Cccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLS-KVSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~-~~~~---~~G~~ 143 (377)
|..++|+|+|+|++.+ +++. +.||.
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~ 30 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYR 30 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEE
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcE
Confidence 6678899999999999 4777 77875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.83 E-value=1.9 Score=43.74 Aligned_cols=185 Identities=10% Similarity=0.055 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC------------CcEEEEEcCCCCc--EEEEecc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH------------GTISRTHRDGTGR--ENIIEYV 226 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~------------~~I~~~~~~G~~~--~~i~~~~ 226 (377)
.|+.+++++... . ....+.... ..++++.+.+..||++.... ..|++.++.+... +.+...
T Consensus 148 ~i~v~dl~tg~~--~-~~~~~~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~- 222 (695)
T 2bkl_A 148 VLHVIDVDSGEW--S-KVDVIEGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER- 222 (695)
T ss_dssp EEEEEETTTCCB--C-SSCCBSCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-
T ss_pred EEEEEECCCCCC--c-CCcccCccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-
Confidence 589999987643 1 000112211 15677888788899887532 2499999876542 333330
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCC---CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEE-ecC-CCC
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPK---ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS-ESG-KIP 301 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~---~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywt-d~g-~~~ 301 (377)
. ..-....++++.+.++.|+++... ...|+..+..+...+.+... .......+ .+.++ +|+. ++. ...
T Consensus 223 -~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~-~~~g~-l~~~s~~~~~~~ 295 (695)
T 2bkl_A 223 -T---GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG-VGAKYEVH-AWKDR-FYVLTDEGAPRQ 295 (695)
T ss_dssp -C---CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC-SSCCEEEE-EETTE-EEEEECTTCTTC
T ss_pred -C---CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC-CCceEEEE-ecCCc-EEEEECCCCCCC
Confidence 0 011234577888877788776432 34788877655444445442 22223332 24455 6665 432 257
Q ss_pred eEEEEecCCCCe---EEEEecC-CCCceEEEEeCCCCEEEEEEeCC--CCeEEEEEccCCceEEE
Q psy5792 302 LIARAGLDGKKQ---TILAQEI-IMPIKDITLDRKNKRVYWCYSVG--SNVLESMDYSGGSKMQL 360 (377)
Q Consensus 302 ~I~r~~ldG~~~---~~l~~~~-~~~P~glalD~~~~~LYw~d~~~--~~~i~~~~~~G~~~~~~ 360 (377)
+|+++++++... +.++... -....++++. +++|+++.. . ..+|..++++|+..+++
T Consensus 296 ~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 296 RVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYL-KDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp EEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEE-ETTEEEEEEEETTCCEEEEC
T ss_pred EEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEE-ECCEEEEEEEeCCCCeeEEe
Confidence 999999986553 5555432 2234667775 678888765 4 34677777776644443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.95 Score=45.86 Aligned_cols=166 Identities=10% Similarity=-0.018 Sum_probs=84.0
Q ss_pred eEEEEEECCCCEEEEE--EcCC--CcEEEEE----cCCCCcEEEEeccccCCCCCCC--CcceEEEeccCCeEEE-EcC-
Q psy5792 187 AAKVDFHAAEDYIYWV--DIDH--GTISRTH----RDGTGRENIIEYVETGDPTPVD--QFTDIAVDWIAQNIYW-SDP- 254 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~s--d~~~--~~I~~~~----~~G~~~~~i~~~~~~~~~~~~~--~p~~iavD~~~~~lYw-td~- 254 (377)
...+++.+. +++.++ +... ..|+.++ .++...+.+...........+. ....+++.+.++.||+ +..
T Consensus 255 ~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 255 FSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred EEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 567788776 556555 3222 2588888 5533222111000000001111 0125677766676766 332
Q ss_pred -CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-----CCCeEEEEecCCCC--eEEEEecCC----C
Q psy5792 255 -KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-----KIPLIARAGLDGKK--QTILAQEII----M 322 (377)
Q Consensus 255 -~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-----~~~~I~r~~ldG~~--~~~l~~~~~----~ 322 (377)
...+|.+.++++...+.+... -....+++.. .++.||++... ...+|+++++++.. .+.+.. .+ .
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~-~~~~~~~ 410 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC-HLRKERC 410 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST-TTTTTTB
T ss_pred CCceEEEEEECCCCceEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC-ccCCCCC
Confidence 234789999887665444432 2223455554 67889988753 24689999986542 333221 11 1
Q ss_pred CceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCc
Q psy5792 323 PIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGS 356 (377)
Q Consensus 323 ~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~ 356 (377)
....+++.+..++|+++-.. ....+...+...+.
T Consensus 411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 22345565555666654330 22355566664333
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.66 E-value=1.3 Score=40.67 Aligned_cols=262 Identities=10% Similarity=-0.025 Sum_probs=141.5
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC-CCC---
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL-DGS--- 89 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~g~--- 89 (377)
.+.+++..+++.+| .+-+..+.|..-|.... ...+. ........+++ .++....+-..++.|...+. ...
T Consensus 66 ~V~~~~~s~d~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 66 KVLCMDWCKDKRRI-VSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred eEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCcceEEe--cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 56777777765544 45556777888886554 44443 33345667777 34444555455566655552 111
Q ss_pred ---ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 90 ---NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 90 ---~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
....+..... +..+.+ +++ ...|+.+. ..+.|+..
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~-~~~---------------------------------------~~~l~t~s-~D~~v~lw 181 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSF-TNS---------------------------------------DMQILTAS-GDGTCALW 181 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEE-CSS---------------------------------------SSEEEEEE-TTSEEEEE
T ss_pred ccccceeeeccCCcEEEEEE-eCC---------------------------------------CCEEEEEe-CCCcEEEE
Confidence 0111111111 111111 111 11333333 33468888
Q ss_pred EcCCCCceeeEEEEecC-CCCceEEEEEECC-CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPLS-KVSLAAKVDFHAA-EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~-~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++..... +..+. ....+..+++.+. .+.++++-...+.|...++.......... ..-..+.++++.
T Consensus 182 d~~~~~~-----~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-------~h~~~v~~v~~~ 249 (354)
T 2pbi_B 182 DVESGQL-----LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-------THESDVNSVRYY 249 (354)
T ss_dssp ETTTCCE-----EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC
T ss_pred eCCCCeE-----EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------CCCCCeEEEEEe
Confidence 8765533 11122 2334667777664 23555555567899999986443333333 233458889998
Q ss_pred ccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecC
Q psy5792 244 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEI 320 (377)
Q Consensus 244 ~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~--~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~ 320 (377)
+. ++++.+-...++|...++............ ......+++.|...+|+-... ...|...++. |.....+ ...
T Consensus 250 p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~--d~~i~vwd~~~~~~~~~l-~~h 325 (354)
T 2pbi_B 250 PS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN--DYTINVWDVLKGSRVSIL-FGH 325 (354)
T ss_dssp TT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCSEEEEE-CCC
T ss_pred CC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC--CCcEEEEECCCCceEEEE-ECC
Confidence 74 556666666788999998776544343321 234678999986666665543 4677777764 3333332 222
Q ss_pred CCCceEEEEeCCCCEEEE
Q psy5792 321 IMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 321 ~~~P~glalD~~~~~LYw 338 (377)
-.....+++.+.+..|.-
T Consensus 326 ~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp SSCEEEEEECTTSSCEEE
T ss_pred CCcEEEEEECCCCCEEEE
Confidence 345677888655444443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.65 E-value=1.5 Score=41.41 Aligned_cols=266 Identities=11% Similarity=0.019 Sum_probs=146.9
Q ss_pred EEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEe
Q psy5792 30 VYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFIL 105 (377)
Q Consensus 30 ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v 105 (377)
+..+-+..+.|...|+... ..++. ........+++..+.++++-..++.|...+ .+|+....+..... +..+.+
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 211 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEE
Confidence 4445566788999998666 44442 455677888885554666666778899888 66766666553333 455554
Q ss_pred eecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceee----------
Q psy5792 106 FSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVT---------- 175 (377)
Q Consensus 106 ~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~---------- 175 (377)
.... +..++++....+.|+..++........
T Consensus 212 ~~~~---------------------------------------~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 212 VEYK---------------------------------------NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EESS---------------------------------------SCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ecCC---------------------------------------CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 2211 011233332333466666654321000
Q ss_pred ---------EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 176 ---------QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 176 ---------~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
...........+..+..+ ++.++... ..+.|...++.......... .....+..+++++.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSGH--GNIVVSGS-YDNTLIVWDVAQMKCLYILS-------GHTDRIYSTIYDHER 322 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEEETTT
T ss_pred eeccCCCeEEEEEccCccceEEEEcCC--CCEEEEEe-CCCeEEEEECCCCcEEEEec-------CCCCCEEEEEEcCCC
Confidence 000111122234455444 56666555 56788888886433222222 234458889999754
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceE
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 326 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~g 326 (377)
. ..++-...+.|.+.++........+.........+++++ .+|+-+.. .+.|...++........... -.....
T Consensus 323 ~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~--dg~v~vwd~~~~~~~~~~~~-~~~~~~ 396 (464)
T 3v7d_B 323 K-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAA--DGSIRGWDANDYSRKFSYHH-TNLSAI 396 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--SEEEEEET--TSEEEEEETTTCCEEEEEEC-TTCCCE
T ss_pred C-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--CEEEEEeC--CCcEEEEECCCCceeeeecC-CCCccE
Confidence 4 445655667899999976554433444455567888863 45555543 46777777775444333332 233445
Q ss_pred EEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 327 ITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 327 lalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
+++.+.+..|.... .+.|...++..+
T Consensus 397 ~~~~~~~~~l~~~~---dg~i~iwd~~~g 422 (464)
T 3v7d_B 397 TTFYVSDNILVSGS---ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEECSSEEEEEE---TTEEEEEETTTC
T ss_pred EEEEeCCCEEEEec---CCeEEEEECCCC
Confidence 56665444443332 356777776643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=2.5 Score=43.53 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=149.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCC---C--CCceEEEEE-ECCeEEEEcCCCCceEEEcC-C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMP---D--AAQVVAAVF-YKGRIIYSDANDGNIRSINL-D 87 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~---~--~~~p~~lav-~~~~ly~td~~~~~I~~~~~-~ 87 (377)
..+.++..|.. +.| |+-+..+-|.+++.... .+.+.... . .....+|.. .++.|++.. ..+.|.+++. .
T Consensus 310 ~~i~~i~~D~~-g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt-~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 310 RSVRSIFMDSQ-GGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT-NDGGLNLYNPIT 386 (795)
T ss_dssp SCEEEEEECTT-SCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE-SSSCEEEECTTT
T ss_pred CcEEEEEEeCC-cCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE-CCCCeEEEcCCC
Confidence 45667778865 344 55555566888888766 55442111 1 223566666 355666653 3456888884 3
Q ss_pred CCceEEEecC------C--C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcE-EEEEeC
Q psy5792 88 GSNSTVLRNN------A--G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDF-ILFSVN 157 (377)
Q Consensus 88 g~~~~~~~~~------~--~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~-l~~s~~ 157 (377)
++........ . . +.++.. ..+.. |.++..
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~-----------------------------------------d~~g~~lWigt~ 425 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYV-----------------------------------------DEKKSLVYIGTH 425 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEE-----------------------------------------ETTTTEEEEEET
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEE-----------------------------------------cCCCCEEEEEeC
Confidence 3322221110 0 0 111111 11123 555543
Q ss_pred -CCCeEEEEEcCCCCceeeEEEEec---CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCC
Q psy5792 158 -SGYDIMGIKYNKNESKVTQVLGPL---SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTP 233 (377)
Q Consensus 158 -~~~~I~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~ 233 (377)
.+ |.+++...... ...... .....+.++..|. ++.||++.. +.+++++.+....+.+.. ...+..
T Consensus 426 ~~G--l~~~d~~~~~~---~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~---~~~~~~ 494 (795)
T 4a2l_A 426 AGG--LSILHRNSGQV---ENFNQRNSQLVNENVYAILPDG-EGNLWLGTL--SALVRFNPEQRSFTTIEK---EKDGTP 494 (795)
T ss_dssp TTE--EEEEETTTCCE---EEECTTTSCCSCSCEEEEEECS-SSCEEEEES--SCEEEEETTTTEEEECCB---CTTCCB
T ss_pred cCc--eeEEeCCCCcE---EEeecCCCCcCCCeeEEEEECC-CCCEEEEec--CceeEEeCCCCeEEEccc---cccccc
Confidence 44 77777665432 111110 1123577888886 677888764 578888886433222221 000011
Q ss_pred C--CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee----CC--CCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 234 V--DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS----GG--VDQPSALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 234 ~--~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~----~~--~~~P~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
+ ..+.+|+.| ..++||+... +.+.+.+.++... .+.. .. .....+|+.|+ +|.|+++.. ..|.+
T Consensus 495 ~~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~---~Gl~~ 566 (795)
T 4a2l_A 495 VVSKQITTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS-NGIIWVGTR---EGFYC 566 (795)
T ss_dssp CCCCCEEEEEEC-TTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT-TSCEEEEES---SCEEE
T ss_pred cCCceEEEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC-CCCEEEEeC---CCcee
Confidence 2 347889999 4678887765 4588888776544 3221 11 13457888886 788888764 26888
Q ss_pred EecCCCCeEEEEec-CC--CCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 306 AGLDGKKQTILAQE-II--MPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 306 ~~ldG~~~~~l~~~-~~--~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.+......+.+... .+ ....+++.| .+++|+++-. +.|.+++....
T Consensus 567 ~d~~~~~~~~~~~~~gl~~~~i~~i~~d-~~g~lWi~t~---~Gl~~~~~~~~ 615 (795)
T 4a2l_A 567 FNEKDKQIKRYNTTNGLPNNVVYGILED-SFGRLWLSTN---RGISCFNPETE 615 (795)
T ss_dssp EETTTTEEEEECGGGTCSCSCEEEEEEC-TTSCEEEEET---TEEEEEETTTT
T ss_pred ECCCCCcEEEeCCCCCCchhheEEEEEC-CCCCEEEEcC---CceEEEcCCCC
Confidence 88765433333221 12 235678888 4577776644 56777777644
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.52 E-value=1.5 Score=40.54 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=92.0
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
+..+.+.+..+..+++-...+.|...++.............. ......+..+++.+.+++++.+-...++|..-++..
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP--SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS--SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC--CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 344455554444455555677888888764433333320000 012234667788776788888888888999999863
Q ss_pred --CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC-------CCCceEEEEeCCCCEEE
Q psy5792 267 --QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI-------IMPIKDITLDRKNKRVY 337 (377)
Q Consensus 267 --~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~-------~~~P~glalD~~~~~LY 337 (377)
....++ ........++++.|. +..+.+-. ....|...++............ ......+++.+.+. +.
T Consensus 238 ~~~~~~~~-~~h~~~v~~v~~~p~-~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l 313 (380)
T 3iz6_a 238 TSRAVRTY-HGHEGDINSVKFFPD-GQRFGTGS-DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LL 313 (380)
T ss_dssp TCCCCEEE-CCCSSCCCEEEECTT-SSEEEEEC-SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EE
T ss_pred CCcceEEE-CCcCCCeEEEEEecC-CCeEEEEc-CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EE
Confidence 223333 333456789999985 44444432 2467777777644333322221 12256788876544 44
Q ss_pred EEEeCCCCeEEEEEccCC
Q psy5792 338 WCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 338 w~d~~~~~~i~~~~~~G~ 355 (377)
++-. ..+.|...+...+
T Consensus 314 ~~g~-~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 314 FAGY-SNGDCYVWDTLLA 330 (380)
T ss_dssp EEEC-TTSCEEEEETTTC
T ss_pred EEEE-CCCCEEEEECCCC
Confidence 4455 5677777776533
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.44 E-value=1.5 Score=40.11 Aligned_cols=252 Identities=8% Similarity=0.021 Sum_probs=141.7
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCC
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESK 125 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~ 125 (377)
.+++. .+......+++ .++...+|-..++.|...+ .++.....+..... +..+++ +|+.
T Consensus 57 ~~~l~--gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~-sp~g--------------- 118 (354)
T 2pbi_B 57 RRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY-APSG--------------- 118 (354)
T ss_dssp EEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEE-CTTS---------------
T ss_pred EEEec--CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEE-CCCC---------------
Confidence 45554 55666788888 3445666666677888888 55655444432222 333322 2221
Q ss_pred ceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce---eeEEEEecCCCCceEEEEEECCCCEEEEE
Q psy5792 126 VQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK---VTQVLGPLSKVSLAAKVDFHAAEDYIYWV 202 (377)
Q Consensus 126 Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~d~~~~~ly~s 202 (377)
..+.+....+.++..++...... .....+. .....+.++++.+.+..|+-+
T Consensus 119 -------------------------~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~ 172 (354)
T 2pbi_B 119 -------------------------CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTA 172 (354)
T ss_dssp -------------------------SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEE
T ss_pred -------------------------CEEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEE
Confidence 24444444445666666432110 0000111 123346788888866666654
Q ss_pred EcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc-CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCce
Q psy5792 203 DIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI-AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPS 281 (377)
Q Consensus 203 d~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~-~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~ 281 (377)
. ..+.|...++........+. ..-..+..+++.+. .++++++-...++|...++........+........
T Consensus 173 s-~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 173 S-GDGTCALWDVESGQLLQSFH-------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN 244 (354)
T ss_dssp E-TTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred e-CCCcEEEEeCCCCeEEEEEc-------CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence 4 56888888886443333332 23344667777664 356777777778899999876554444444455678
Q ss_pred eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC--CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 282 ~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~--~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
+++++|....|.-+.. ...|...++.......+.... ......+++.+.+. +..+-. ..+.|...++..+.
T Consensus 245 ~v~~~p~~~~l~s~s~--D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~-~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSD--DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR-LLFAGY-NDYTINVWDVLKGS 317 (354)
T ss_dssp EEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS-EEEEEE-TTSCEEEEETTTCS
T ss_pred EEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC-EEEEEE-CCCcEEEEECCCCc
Confidence 9999996555554443 466777777654433333321 22456778875544 444444 56777777775343
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.43 E-value=1.6 Score=40.27 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=102.3
Q ss_pred eEEEEE--ECCeEEEEcC-CCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCc
Q psy5792 61 VVAAVF--YKGRIIYSDA-NDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKV 136 (377)
Q Consensus 61 p~~lav--~~~~ly~td~-~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~ 136 (377)
+..+++ .+.+|..+.. ..+.|+..+ .+++....+.....+.++++ +|+.+
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~f-spdg~------------------------- 189 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHF-STDGK------------------------- 189 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEE-CTTSS-------------------------
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEE-ccCCc-------------------------
Confidence 455666 3445555443 446677777 56655555543323555553 33322
Q ss_pred cccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC---cEEEEE
Q psy5792 137 SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG---TISRTH 213 (377)
Q Consensus 137 ~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~---~I~~~~ 213 (377)
+++.+..+. +..+....... ............+.+++|.+.+..+..+....+ .++..+
T Consensus 190 --------------~l~s~s~~~--~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 190 --------------VVAYITGSS--LEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp --------------EEEEECSSC--EEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred --------------eEEecccee--EEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 344444444 66666554422 111111112234678888886666665544332 355555
Q ss_pred cCCCCcEE----EEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCC
Q psy5792 214 RDGTGREN----IIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPE 288 (377)
Q Consensus 214 ~~G~~~~~----i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~ 288 (377)
........ ... .....+.++++.+.++ +..+-...+.|.+.++.... ...+.........++++.|.
T Consensus 252 ~~~~~~~~~~~~~~~-------~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVT-------NRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp EETTEEEEEEEEEEE-------SSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT
T ss_pred cccceecceeeeeec-------CCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC
Confidence 54322211 112 2344578899997544 44555556789999987544 34444444556799999995
Q ss_pred CCeEEEEecCCCCeEEEEec
Q psy5792 289 SGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 289 ~g~lywtd~g~~~~I~r~~l 308 (377)
..+| .+-.. ...|...++
T Consensus 324 g~~l-aS~S~-D~tvrvw~i 341 (365)
T 4h5i_A 324 STYV-ASVSA-ANTIHIIKL 341 (365)
T ss_dssp SCEE-EEEET-TSEEEEEEC
T ss_pred CCEE-EEEeC-CCeEEEEEc
Confidence 4444 44322 244544444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=2.9 Score=43.08 Aligned_cols=269 Identities=8% Similarity=0.004 Sum_probs=147.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCC-----C--CCceEEEEEE-CCe-EEEEcCCCCceEEEcC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMP-----D--AAQVVAAVFY-KGR-IIYSDANDGNIRSINL 86 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~-----~--~~~p~~lav~-~~~-ly~td~~~~~I~~~~~ 86 (377)
.+.+++.|.+ +.| |+-+..+-|.+++.+.. .+.+.... . .....+|+.. ++. ||+.. ..+.|.+++.
T Consensus 358 ~V~~i~~d~~-g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDKD-KNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-HAGGLSILHR 434 (795)
T ss_dssp SEEEEEECTT-SCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-TTTEEEEEET
T ss_pred eeEEEEECCC-CCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-CcCceeEEeC
Confidence 4567777764 345 55555666999998876 65553111 1 2346677774 566 66654 3456888884
Q ss_pred CCCceEEEecC---C---CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC
Q psy5792 87 DGSNSTVLRNN---A---GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY 160 (377)
Q Consensus 87 ~g~~~~~~~~~---~---~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~ 160 (377)
.....+.+... . .+..+.. ..+..|.++...+
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~-----------------------------------------d~~g~lwigt~~G- 472 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILP-----------------------------------------DGEGNLWLGTLSA- 472 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEE-----------------------------------------CSSSCEEEEESSC-
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEE-----------------------------------------CCCCCEEEEecCc-
Confidence 33232222210 0 0112211 0112366666555
Q ss_pred eEEEEEcCCCCceeeEEEEec---C--CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-
Q psy5792 161 DIMGIKYNKNESKVTQVLGPL---S--KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV- 234 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~---~--~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~- 234 (377)
+.+++.+.... ...... . ....+.++..|. .+.||++.. +.+++++.++... .+... .....+
T Consensus 473 -l~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~--~Gl~~~~~~~~~~-~~~~~---~~~~~l~ 541 (795)
T 4a2l_A 473 -LVRFNPEQRSF---TTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE--EGLSVFKQEGLDI-QKASI---LPVSNVT 541 (795)
T ss_dssp -EEEEETTTTEE---EECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES--SCEEEEEEETTEE-EECCC---SCSCGGG
T ss_pred -eeEEeCCCCeE---EEccccccccccCCceEEEEEECC-CCCEEEEeC--CceEEEeCCCCeE-EEecC---CCCCCCC
Confidence 88877654322 111110 0 113467888885 677888764 5788888764332 22110 000111
Q ss_pred -CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee-CCC--CCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 235 -DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GGV--DQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 235 -~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~-~~~--~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
..+.+|+.|. .++|+++-.. .|.+.+.+....+.+.. .++ ....+|+.|+ .|.|+++. ...|.+.+.+.
T Consensus 542 ~~~i~~i~~d~-~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~-~g~lWi~t---~~Gl~~~~~~~ 614 (795)
T 4a2l_A 542 KLFTNCIYEAS-NGIIWVGTRE--GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS-FGRLWLST---NRGISCFNPET 614 (795)
T ss_dssp GSCEEEEEECT-TSCEEEEESS--CEEEEETTTTEEEEECGGGTCSCSCEEEEEECT-TSCEEEEE---TTEEEEEETTT
T ss_pred CCeeEEEEECC-CCCEEEEeCC--CceeECCCCCcEEEeCCCCCCchhheEEEEECC-CCCEEEEc---CCceEEEcCCC
Confidence 2467888884 6778776553 58888887665444322 222 2467889996 78888886 35788888765
Q ss_pred CCeEEEEec-CCC----CceEEEEeCCCCEEEEEEeCCCCeEEEEEc
Q psy5792 311 KKQTILAQE-IIM----PIKDITLDRKNKRVYWCYSVGSNVLESMDY 352 (377)
Q Consensus 311 ~~~~~l~~~-~~~----~P~glalD~~~~~LYw~d~~~~~~i~~~~~ 352 (377)
...+.+... ++. .+.++..| .+++||+.-. +-+.+++.
T Consensus 615 ~~~~~~~~~dGl~~~~f~~~~~~~~-~~G~l~~g~~---~Gl~~~~p 657 (795)
T 4a2l_A 615 EKFRNFTESDGLQSNQFNTASYCRT-SVGQMYFGGI---NGITTFRP 657 (795)
T ss_dssp TEEEEECGGGTCSCSCEEEEEEEEC-TTSCEEEEET---TEEEEECG
T ss_pred CcEEEcCCcCCCccccCccCceeEC-CCCeEEEecC---CceEEEcH
Confidence 443333222 121 13466776 5788888754 33545544
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0019 Score=43.18 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=22.0
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
|..++++|+|+|++.++++. +.||.
T Consensus 4 C~~~~~~C~~~C~nt~Gsy~C~C~~Gy~ 31 (55)
T 2jkh_L 4 CSLDNGDCDQFCHEEQNSVVCSCARGYT 31 (55)
T ss_dssp TTTGGGGCSSEEEEETTEEEEECCTTEE
T ss_pred ccCCCCCcCcEeEcCCCCeEEeCCCCCE
Confidence 87788999999999999998 77875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=95.23 E-value=2.7 Score=41.72 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=139.2
Q ss_pred eeEeeccccCCC--CcCCccccccCCCCeEEEEeCCCCcEEEEEcC-Cc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCC
Q psy5792 3 YLHVLPYTRNPS--FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE-VK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDAN 77 (377)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d-G~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~ 77 (377)
|-...-|+..|. -+.|..++.+++++.|.... .+.|..-++. +. .+++. .+......+++ .++.+..+-..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~lasg~~ 79 (611)
T 1nr0_A 4 FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDV 79 (611)
T ss_dssp CEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccEECCCCCcccCceeEEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEec--CCCCceEEEEECCCCcEEEEEeC
Confidence 344455665555 45888888999888886654 4578888886 45 55553 44556778888 44555555555
Q ss_pred CCceEEEc-CCCCce--EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 78 DGNIRSIN-LDGSNS--TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 78 ~~~I~~~~-~~g~~~--~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
++.|+..+ .+++.. ..+..... +.++++ +++.+ .|+
T Consensus 80 d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f-s~dg~---------------------------------------~l~ 119 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISW-DSESK---------------------------------------RIA 119 (611)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSSSCEEEEEE-CTTSC---------------------------------------EEE
T ss_pred CCCEEEeECCCCcceeeEeecccCCceEEEEE-CCCCC---------------------------------------EEE
Confidence 67788777 344432 22332222 444443 33322 233
Q ss_pred EEeCCC---CeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 154 FSVNSG---YDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 154 ~s~~~~---~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.+.... +.|+.. +.... ...+. ....+..++|.+.+...+.+-...+.|...+...........
T Consensus 120 ~~~~~~~~~~~v~~w--d~~~~-----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~----- 187 (611)
T 1nr0_A 120 AVGEGRERFGHVFLF--DTGTS-----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----- 187 (611)
T ss_dssp EEECCSSCSEEEEET--TTCCB-----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-----
T ss_pred EEECCCCceeEEEEe--eCCCC-----cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-----
Confidence 332211 123322 21111 01112 233478899988766556666667788877765322222222
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC-eEEEEee------CCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ-YRYVLIS------GGVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~-~~~~l~~------~~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..-..+.++++.+. +.++.+-...++|..-++... ...++.. .......++++.|...+|.-+.. ...
T Consensus 188 --~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~--D~~ 262 (611)
T 1nr0_A 188 --EHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA--DKT 262 (611)
T ss_dssp --CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET--TSE
T ss_pred --cccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC--CCe
Confidence 23345889999974 556677677788999887543 3333322 23445789999986555544432 456
Q ss_pred EEEEecC
Q psy5792 303 IARAGLD 309 (377)
Q Consensus 303 I~r~~ld 309 (377)
|..-++.
T Consensus 263 v~lWd~~ 269 (611)
T 1nr0_A 263 IKIWNVA 269 (611)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 6666665
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.17 E-value=1.9 Score=39.71 Aligned_cols=196 Identities=9% Similarity=0.064 Sum_probs=107.5
Q ss_pred CCccccccCCCCeEEEEeC-CCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKT-LSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~-~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
++..+++.+++..|..+-. ..+.|...|+... ..++ .......+|++. ++.+..+- ..+.+.+++ .+|...
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~---~~~~~V~~v~fspdg~~l~s~-s~~~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI---ETRGEVKDLHFSTDGKVVAYI-TGSSLEVISTVTGSCI 210 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE---ECSSCCCEEEECTTSSEEEEE-CSSCEEEEETTTCCEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe---CCCCceEEEEEccCCceEEec-cceeEEEEEeccCcce
Confidence 5678899998888877655 3577888898776 4444 334457888983 33333332 345677777 666553
Q ss_pred EEEecC--CC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC---eEEEE
Q psy5792 92 TVLRNN--AG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY---DIMGI 165 (377)
Q Consensus 92 ~~~~~~--~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~---~I~~~ 165 (377)
...... .. +..+++ +++.+ .++.+..+.+ .++..
T Consensus 211 ~~~~~~~~~~~v~~v~f-spdg~---------------------------------------~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINF-IADDT---------------------------------------VLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECCCCTTEEEEEEEE-EETTE---------------------------------------EEEEEEESSSCCEEEEEE
T ss_pred eeeecCCCCCCEEEEEE-cCCCC---------------------------------------EEEEEecCCcceeEEeec
Confidence 322211 11 334433 33322 2222221110 13334
Q ss_pred EcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++........ ....+ .....+.+++|.+.+..|.... ..+.|...++..... ..+.. .....+.++++.
T Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~~~~~~~~~~-------gH~~~V~~v~fS 321 (365)
T 4h5i_A 251 SIKSGNTSVL-RSKQVTNRFKGITSMDVDMKGELAVLAS-NDNSIALVKLKDLSMSKIFKQ-------AHSFAITEVTIS 321 (365)
T ss_dssp EEETTEEEEE-EEEEEESSCSCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEETT-------SSSSCEEEEEEC
T ss_pred ccccceecce-eeeeecCCCCCeEeEEECCCCCceEEEc-CCCEEEEEECCCCcEEEEecC-------cccCCEEEEEEC
Confidence 4332211000 11111 2234578999999666665554 567888888864222 22222 223458899999
Q ss_pred ccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 244 WIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 244 ~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
+. +.+..+-...++|.+.++..
T Consensus 322 pd-g~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 322 PD-STYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TT-SCEEEEEETTSEEEEEECCT
T ss_pred CC-CCEEEEEeCCCeEEEEEcCC
Confidence 75 55556777778888888754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=2.3 Score=39.81 Aligned_cols=206 Identities=11% Similarity=0.025 Sum_probs=108.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc----CCc-EEEEEeC--------C--CCCceEEEEEE---CCeEEEEcCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI----EVK-VAKVVSM--------P--DAAQVVAAVFY---KGRIIYSDAN 77 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~----dG~-~~~i~~~--------~--~~~~p~~lav~---~~~ly~td~~ 77 (377)
..+.+++..+.+..| .+-+..+.|...++ .|. .+..... + .......++.. ++.++++-..
T Consensus 112 ~~v~~~~~~~~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 112 STVTQITMIPNFDAF-AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SCEEEEEECTTSSEE-EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCEEEEEEeCCCCEE-EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 357788888755544 44455677887776 454 3322100 0 22233344432 3555555566
Q ss_pred CCceEEEc-CCCCceEEEec--CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 78 DGNIRSIN-LDGSNSTVLRN--NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 78 ~~~I~~~~-~~g~~~~~~~~--~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
++.|...+ .+++....+.. ... +..+++ +++. .++
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~-s~~~----------------------------------------~~l 229 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICI-DEEC----------------------------------------CVL 229 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEE-CTTS----------------------------------------CEE
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEE-CCCC----------------------------------------CEE
Confidence 77888888 56666555543 112 444443 2221 133
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECC---CCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAA---EDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETG 229 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~---~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~ 229 (377)
++....|.|+..++..... ...+.+.....+..+++.+. ++.+.++-...+.|...++.... ...+.......
T Consensus 230 ~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVL---IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp EEEETTSCEEEEETTTTEE---EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred EEEcCCCeEEEEEcCCccE---EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 3333334688888765422 11112233334667755542 34555666566788888886433 22222100000
Q ss_pred -----CC-------------CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 230 -----DP-------------TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 230 -----~~-------------~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
.+ .....+..++++ .+.++++-...++|.+-++....
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcc
Confidence 00 011226678888 55677777777899999987654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=2.2 Score=38.27 Aligned_cols=182 Identities=9% Similarity=-0.008 Sum_probs=101.3
Q ss_pred CeEEEEEcCCCC-ceeeEEEEecCCCCceEEEEE------ECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCC
Q psy5792 160 YDIMGIKYNKNE-SKVTQVLGPLSKVSLAAKVDF------HAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDP 231 (377)
Q Consensus 160 ~~I~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~------d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~ 231 (377)
|.|+..++.... . ...+ ......+..+++ .+.+..|+.+ ...+.|...++.... ..........
T Consensus 90 g~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~--- 161 (357)
T 3i2n_A 90 GNLHIWNLEAPEMP--VYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTG-SRDGTVKVWDPRQKDDPVANMEPVQG--- 161 (357)
T ss_dssp SCEEEECTTSCSSC--SEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEE-ETTSCEEEECTTSCSSCSEEECCCTT---
T ss_pred CeEEEEeCCCCCcc--EEEE--EecccceEEEeeccccccCCCccEEEEE-eCCCeEEEEeCCCCCCcceeccccCC---
Confidence 458888876554 2 1111 122334666754 3434455444 457788888886543 2222220000
Q ss_pred CCCCCcceEEE----eccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC---CCCeEEEEecCCCCeEE
Q psy5792 232 TPVDQFTDIAV----DWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP---ESGYLFWSESGKIPLIA 304 (377)
Q Consensus 232 ~~~~~p~~iav----D~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp---~~g~lywtd~g~~~~I~ 304 (377)
........+++ .+ .++++++-...+.|...++.......... .......++++| ...+|+.+.. ...|.
T Consensus 162 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSL--EGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEES--TTEEE
T ss_pred CCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECC--CCeEE
Confidence 01124556663 33 45565666666899999998876644433 345679999998 6666666653 45666
Q ss_pred EEecCCC-CeEEE----EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 305 RAGLDGK-KQTIL----AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 305 r~~ldG~-~~~~l----~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
..++... ....+ ....-.....+++.+.+..++++-. ..+.|...++..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 291 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-GAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEEEEC
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-CCCcEEEeecCC
Confidence 6655422 11111 1122356778888865554677766 677777777653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.68 E-value=3 Score=39.34 Aligned_cols=277 Identities=7% Similarity=-0.035 Sum_probs=143.9
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE---CCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY---KGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~---~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
.+.+++..+.+ +.++-+..+.|...|++.. ..++. ........+++. ++...++-..++.|...+ .++..
T Consensus 164 ~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 164 GVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp CEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 55666665543 4556666788998898766 44442 345556777774 446666666677888777 44433
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCC--CCCCceeccccCCCccccCCcCCCcCCC-cEEEEEeCCCCeEEEEEc
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNK--NESKVQQVLGPLSKVSLAAKVDFHAGIS-DFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~--~~g~Cs~~C~~~~~~~~~~G~~~C~~~~-~~l~~s~~~~~~I~~~~l 167 (377)
......... .......+... ..|.. ......- .|..++ ..++.+. ..+.|+..++
T Consensus 240 ~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~v---------------~~~~~~~~~l~~~~-~d~~i~vwd~ 297 (464)
T 3v7d_B 240 VPDHGEEHD-YPLVFHTPEEN-----PYFVGVLRGHMASV---------------RTVSGHGNIVVSGS-YDNTLIVWDV 297 (464)
T ss_dssp C------CC-SSEEESCGGGC-----TTEEEEECCCSSCE---------------EEEEEETTEEEEEE-TTSCEEEEET
T ss_pred cccccccCC-cceEeeccCCC-----eEEEEEccCccceE---------------EEEcCCCCEEEEEe-CCCeEEEEEC
Confidence 222111100 00000001000 00000 0000000 111111 2343333 3346888888
Q ss_pred CCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 168 NKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
..... +..+. ....+..+++++.+..|+... ..+.|...++.......... .....+..++++
T Consensus 298 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~--- 361 (464)
T 3v7d_B 298 AQMKC-----LYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQ-------GHTALVGLLRLS--- 361 (464)
T ss_dssp TTTEE-----EEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEEC---
T ss_pred CCCcE-----EEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEe-------CCCCcEEEEEEc---
Confidence 65422 22222 345588999999777766555 56889989986433222232 233346677776
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeE-EEEecCCCCce
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT-ILAQEIIMPIK 325 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~-~l~~~~~~~P~ 325 (377)
+...++-...+.|.+.++....+..... .......+++.+.+..|.... ...|...++...... .+.........
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~g~~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIW 437 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE---TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec---CCeEEEEECCCCcEEehhhccCCCcEE
Confidence 3455666667889999998765443333 233456678887555555544 357777777543321 11112233455
Q ss_pred EEEEeCCCCEEEEEEe
Q psy5792 326 DITLDRKNKRVYWCYS 341 (377)
Q Consensus 326 glalD~~~~~LYw~d~ 341 (377)
.++.+ ++++..+-.
T Consensus 438 ~v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 438 SVNFK--GKTLVAAVE 451 (464)
T ss_dssp EEEEE--TTEEEEEEE
T ss_pred EEEec--CCEEEEEEE
Confidence 66665 566666544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.48 E-value=4.6 Score=40.67 Aligned_cols=189 Identities=13% Similarity=0.001 Sum_probs=105.5
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++++....+.|+..++..... ..........+.++++.+.+..|.-. ...+.|...+..+.....+... ..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~----~~ 514 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNRQIVSA-SRDRTIKLWNTLGECKYTISEG----GE 514 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEEECSS----TT
T ss_pred EEEEEeCCCcEEEEECCCCcc----eeEEeCCCCCEEEEEEeCCCCEEEEE-eCCCEEEEEECCCCcceeeccC----CC
Confidence 344444445688888765522 11111234457899999866665544 4567888887765433333220 00
Q ss_pred CCCCCcceEEEeccC-CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 232 TPVDQFTDIAVDWIA-QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 232 ~~~~~p~~iavD~~~-~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
.....+.++++.+.. +.+..+-...++|.+.++........+.........++++|...+|.-... ...|...++..
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~--Dg~i~iwd~~~ 592 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK--DGVVLLWDLAE 592 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSBCEEEETTT
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCC
Confidence 112236778887654 246667666788999999876554444444566789999996555554442 35666666643
Q ss_pred CCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 311 ~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
......... -.....+++.+....|.-+. .+.|...++..+
T Consensus 593 ~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~---~~~i~iwd~~~~ 633 (694)
T 3dm0_A 593 GKKLYSLEA-NSVIHALCFSPNRYWLCAAT---EHGIKIWDLESK 633 (694)
T ss_dssp TEEEECCBC-SSCEEEEEECSSSSEEEEEE---TTEEEEEETTTT
T ss_pred CceEEEecC-CCcEEEEEEcCCCcEEEEEc---CCCEEEEECCCC
Confidence 322111111 23456777765443333322 345666666643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=3.5 Score=38.38 Aligned_cols=170 Identities=11% Similarity=0.045 Sum_probs=97.2
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
...+..+++.+.+..|.-+ ..+.|...+++. .....++..........-..+..+++.+.+.+++.+-...+.|...
T Consensus 177 ~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CcceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 3447788998865555544 578888888872 2211111100000001223478899997654666776677889999
Q ss_pred EcCCCeE----EEEeeCCCC------------CceeEEEcCCCCeEEEEecCCCCeEEEEecC--CCCeEEEEecC-CCC
Q psy5792 263 RLTGQYR----YVLISGGVD------------QPSALAVDPESGYLFWSESGKIPLIARAGLD--GKKQTILAQEI-IMP 323 (377)
Q Consensus 263 ~~~g~~~----~~l~~~~~~------------~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--G~~~~~l~~~~-~~~ 323 (377)
++..... ...+..... ....++++|...+|.... . ..|...++. +.....+.... +..
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee--C-CeEEEEeCCCCccccceeeccccccc
Confidence 9876542 223332222 578999999666666554 2 567766665 33333332211 000
Q ss_pred -------------ceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 324 -------------IKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 324 -------------P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
...+++.+.+..| .+-. ..+.|...++..+...++
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s-~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVV-MTGS-YNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEE-EEEC-STTEEEEEETTTCCEEEE
T ss_pred cccccccccccccceEEEECCCCCEE-EEec-cCCEEEEEEcCCCcceee
Confidence 2237887666666 5555 678888888886654433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.36 Score=41.98 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-------CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-------GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-------~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~ 256 (377)
..+...+++++ ++.||-. .++.+++.+.... ....|-. .+...-..+.+| .+++||.. ..
T Consensus 40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-------~Gw~~F~a~~fD-~~G~LYav--~d 106 (236)
T 1tl2_A 40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-------GGWNQFQFLFFD-PNGYLYAV--SK 106 (236)
T ss_dssp CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-------SCGGGCSEEEEC-TTSCEEEE--ET
T ss_pred cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecc-------cccccceEEEEC-CCCCEEEe--CC
Confidence 34566899999 8899988 5778999887421 1122322 233346789999 58999999 33
Q ss_pred CEEEEEEc--CCCe-----EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 257 NVIEVARL--TGQY-----RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 257 ~~I~~~~~--~g~~-----~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
++|++.+. ++.. -.++...+...-..|+.+| .|.||-.. . .+++|-
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g~lyr~ 159 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--QQFYKA 159 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--TEEEEE
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--CcEEec
Confidence 89999887 4432 2345555566779999998 89999988 3 457664
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.57 E-value=8.4 Score=40.44 Aligned_cols=204 Identities=8% Similarity=0.048 Sum_probs=116.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
..+.+++.++.+..|. +-+..+.|...+..+. ..... ........|++..+....+-..++.|...+ .+++....
T Consensus 18 ~~V~~lafspdg~~lA-sgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLA-IATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp SCEEEEEEETTTTEEE-EEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred CCcEEEEECCCCCEEE-EEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEE
Confidence 4678999999876664 4445688999888777 43332 334456788885566444444567888888 56665555
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
+.....+..+++ +++. .+++.+. ..|.|+..+++....
T Consensus 95 ~~~~~~V~~v~~-sp~g---------------------------------------~~l~sgs-~dg~V~lwd~~~~~~- 132 (902)
T 2oaj_A 95 VFVPGKITSIDT-DASL---------------------------------------DWMLIGL-QNGSMIVYDIDRDQL- 132 (902)
T ss_dssp EECSSCEEEEEC-CTTC---------------------------------------SEEEEEE-TTSCEEEEETTTTEE-
T ss_pred EcCCCCEEEEEE-CCCC---------------------------------------CEEEEEc-CCCcEEEEECCCCcc-
Confidence 432211333332 2222 1344443 334688888876532
Q ss_pred eeEEEE---------ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-CC----------CC
Q psy5792 174 VTQVLG---------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-DP----------TP 233 (377)
Q Consensus 174 ~~~~~~---------~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~~----------~~ 233 (377)
..... +-.....+.++++++.+..+..+-...+.| ..++........+...... .+ ..
T Consensus 133 -~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 133 -SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp -EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred -ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 10000 011234577899998655556666667888 8888753322222200000 00 00
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
...+.++++.+. +..+.+-...++|..-++...
T Consensus 211 ~~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 211 TPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp CCCEEEEEECTT-SSEEEEEETTCCEEEEETTTC
T ss_pred CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC
Confidence 134778889875 556667666778888888543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.50 E-value=3.4 Score=40.55 Aligned_cols=188 Identities=7% Similarity=-0.021 Sum_probs=89.4
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~ 230 (377)
++++.+..+.|+-.++..... ...+..-.....+..+++.+.... +.+-...+.|...++.... ...+..
T Consensus 325 ~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~l~g------ 395 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHPLVS------ 395 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEEEEE------
T ss_pred EEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccceeeec------
Confidence 555555555688877754321 011111011123457888885554 5554456678777775433 233333
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC----CCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG----GVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
..+.+.+|++.+. +.++.+-...++|...++.+......-.. .......++.+|..+ ++-.+. ...++..
T Consensus 396 --H~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~~~~~~--~~~~~~~ 469 (524)
T 2j04_B 396 --RETTITAIGVSRL-HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDD-KYRIDS--SYEVYPL 469 (524)
T ss_dssp --CSSCEEEEECCSS-CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSC-EEEECC--CCCCCC-
T ss_pred --CCCceEEEEeCCC-CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCC-eEEccC--Cceeccc
Confidence 3456888999874 44556666667888777654311100000 000124566666433 333321 1222222
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCC--CEEEEEEeCCCCeEEEEEccCCc
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKN--KRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~--~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
...|.....+... -.....++..+.. +.++-+-. ..+.|.--+++|..
T Consensus 470 ~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~-~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 470 TVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSN-SAGLLTLEYLSLEH 519 (524)
T ss_dssp ------------C-CCSCCCEEECCSTTTTTEEEEEC-TTSEEEEEECSCC-
T ss_pred ccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhc-cCceEEEEEccccc
Confidence 2223323333222 2455678887653 23444555 56777777777654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=4.9 Score=37.33 Aligned_cols=145 Identities=9% Similarity=0.067 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCceeeEEEE-----ec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc----EEEEeccc
Q psy5792 158 SGYDIMGIKYNKNESKVTQVLG-----PL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR----ENIIEYVE 227 (377)
Q Consensus 158 ~~~~I~~~~l~~~~~~~~~~~~-----~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~----~~i~~~~~ 227 (377)
..+.|+..++..... ...+. .+ .....+..+++++.+..++.+-...+.|...++..... .....
T Consensus 196 ~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 270 (447)
T 3dw8_B 196 DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE--- 270 (447)
T ss_dssp CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC---
T ss_pred CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec---
Confidence 455688888763211 01111 01 22345889999987634444444678899898865432 23332
Q ss_pred cCCCCCCC------------CcceEEEeccCCeEEEEcCCCCEEEEEEcCC--CeEEEEeeCC-CC-------------C
Q psy5792 228 TGDPTPVD------------QFTDIAVDWIAQNIYWSDPKENVIEVARLTG--QYRYVLISGG-VD-------------Q 279 (377)
Q Consensus 228 ~~~~~~~~------------~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--~~~~~l~~~~-~~-------------~ 279 (377)
.... .+..+++.+.+..|. +-.. +.|.+.++.. .....+.... .. .
T Consensus 271 ----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 271 ----EPEDPSNRSFFSEIISSISDVKFSHSGRYMM-TRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp ----CC-----CCHHHHHTTCEEEEEECTTSSEEE-EEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred ----cCCCccccccccccCceEEEEEECCCCCEEE-EeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 1221 578899998555555 4444 8999999864 3222222110 00 0
Q ss_pred ceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEE
Q psy5792 280 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI 315 (377)
Q Consensus 280 P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~ 315 (377)
...++++|...+|.-.. ..+.|...++.......
T Consensus 345 ~~~~~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGS--YNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp CCCEEECTTSSEEEEEC--STTEEEEEETTTCCEEE
T ss_pred ceEEEECCCCCEEEEec--cCCEEEEEEcCCCccee
Confidence 22389998766664443 35778777777654433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=6.7 Score=38.84 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCeEEEEeCCCCcEEEEEc--CCcEEEEEeCCCC----------CceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 27 GPFVYGVKTLSHSLHYVNI--EVKVAKVVSMPDA----------AQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~--dG~~~~i~~~~~~----------~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
+++||+.....+.|.-+|. +|+...-...... ....++++.+++||+... .+.|..+| .+|+.+-.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-CCEEEEEECCCCCEEEE
Confidence 5689998764678999998 6663222211110 012356789999999964 46799999 78877533
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.40 E-value=5.1 Score=37.38 Aligned_cols=139 Identities=6% Similarity=-0.054 Sum_probs=79.5
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc--CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI--DHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~--~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p 237 (377)
+.++..+....................+.++++.+.+..++.+-. ..+.|...++.......... .-..+
T Consensus 252 ~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--------~~~~v 323 (420)
T 4gga_A 252 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--------AHSQV 323 (420)
T ss_dssp SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------CSSCE
T ss_pred ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--------cccce
Confidence 347766665432200011111223345778888877776665532 35678888876433333332 23457
Q ss_pred ceEEEeccCCeEEEEcC-CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 238 TDIAVDWIAQNIYWSDP-KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
..+++.+..+.|+.+.. ..++|.+.++........+........++++.|...+|.-+.. ...|..-++
T Consensus 324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~--D~tvriWdv 393 (420)
T 4gga_A 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA--DETLRLWRC 393 (420)
T ss_dssp EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET--TTEEEEECC
T ss_pred eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec--CCeEEEEEC
Confidence 78888877777776643 4678999998755443334444566789999986555544432 244444443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=92.95 E-value=5.4 Score=36.48 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEee
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLIS 274 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~ 274 (377)
++.||+.. ..+.++.++..... .+.. .....+.+++++ .++||++.. .+.|...++. |+..-..-.
T Consensus 239 ~~~v~~~~-~~g~l~~~d~~tG~--~~w~-------~~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 239 NGVVFALA-YNGNLTALDLRSGQ--IMWK-------RELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp TTEEEEEC-TTSCEEEEETTTCC--EEEE-------ECCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCCEEEEECT
T ss_pred CCEEEEEe-cCcEEEEEECCCCc--EEee-------ccCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCcEEEeecc
Confidence 68898876 45788888885322 2222 234456677887 789999875 3578888875 443222210
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 275 GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 275 ~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
.........++. ++.||+.+. ...|...+.. |+.....-...-......++ .+++||+... .+.|+.++
T Consensus 306 ~~~~~~~~~~~~--~~~l~v~~~--~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~--~G~l~~~~ 375 (376)
T 3q7m_A 306 LLHRLLTSPVLY--NGNLVVGDS--EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK--DGTVYSIT 375 (376)
T ss_dssp TTTSCCCCCEEE--TTEEEEECT--TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT--TSCEEEEE
T ss_pred cCCCcccCCEEE--CCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC--CCEEEEEe
Confidence 111223344453 688888874 4678888754 44332222211111122333 3688988765 45666654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=1 Score=39.04 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=66.2
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC-------CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG-------QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g-------~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
+......||+++ ++.||-. ..+.+++.++.. ...+.|-..+...-.++.+|| +|.||... ..+|+|
T Consensus 39 gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~---dG~iyr 111 (236)
T 1tl2_A 39 GWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS---KDKLYK 111 (236)
T ss_dssp SCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE---TTEEEE
T ss_pred ccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC---CCEEEE
Confidence 466788999998 8999999 667899988743 123344444555578999997 89999993 379999
Q ss_pred Eec--CCCC-----eEEEEecCCCCceEEEEeCCCCEEEEEE
Q psy5792 306 AGL--DGKK-----QTILAQEIIMPIKDITLDRKNKRVYWCY 340 (377)
Q Consensus 306 ~~l--dG~~-----~~~l~~~~~~~P~glalD~~~~~LYw~d 340 (377)
.+- ++.. .+.+-+..-..-.-|..|+ ++.||-+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~ 152 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH 152 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe
Confidence 875 3332 2344443222335566663 46666554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=92.74 E-value=5.8 Score=36.28 Aligned_cols=264 Identities=12% Similarity=0.058 Sum_probs=129.1
Q ss_pred CCeEEEEeCCCCcEEEEEcC-Cc-EEEEEeCC--------CCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEe
Q psy5792 27 GPFVYGVKTLSHSLHYVNIE-VK-VAKVVSMP--------DAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR 95 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~d-G~-~~~i~~~~--------~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~ 95 (377)
+++||+... .+.|..+|.+ |+ +-+.-... .......+++.++.||+... .+.|..++ .+|+..-...
T Consensus 53 ~~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADR-AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE-KAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECT-TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET-TSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcC-CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC-CCEEEEEECCCCCEEEEEe
Confidence 568888754 5689999985 66 33332111 11223446679999999864 46799999 6787643332
Q ss_pred cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceee
Q psy5792 96 NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVT 175 (377)
Q Consensus 96 ~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~ 175 (377)
....+....+.. +..+++... .+.|..++......
T Consensus 131 ~~~~~~~~p~~~-----------------------------------------~~~v~v~~~-~g~l~~~d~~tG~~--- 165 (376)
T 3q7m_A 131 VAGEALSRPVVS-----------------------------------------DGLVLIHTS-NGQLQALNEADGAV--- 165 (376)
T ss_dssp CSSCCCSCCEEE-----------------------------------------TTEEEEECT-TSEEEEEETTTCCE---
T ss_pred CCCceEcCCEEE-----------------------------------------CCEEEEEcC-CCeEEEEECCCCcE---
Confidence 111100000000 112333322 23466666543322
Q ss_pred EEEEecCCC----CceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccccCCC---CCCC-CcceEEEeccC
Q psy5792 176 QVLGPLSKV----SLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVETGDP---TPVD-QFTDIAVDWIA 246 (377)
Q Consensus 176 ~~~~~~~~~----~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~~~~~---~~~~-~p~~iavD~~~ 246 (377)
......... .......++ ++.||+.. ..+.++.++.. |...-..... ..... ..+. .....+++ .
T Consensus 166 ~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~~--~ 239 (376)
T 3q7m_A 166 KWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVVV--N 239 (376)
T ss_dssp EEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECC-C-----------CCCCCCEEE--T
T ss_pred EEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcEEE--C
Confidence 011111100 000111222 56777653 35677777764 3222111110 00000 0000 00112333 6
Q ss_pred CeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCc
Q psy5792 247 QNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPI 324 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P 324 (377)
+.||+... .+.+...++. |+..-.. ....+.+++++ ++.||++.. ...|...+.. |+.....-...-...
T Consensus 240 ~~v~~~~~-~g~l~~~d~~tG~~~w~~---~~~~~~~~~~~--~~~l~~~~~--~g~l~~~d~~tG~~~w~~~~~~~~~~ 311 (376)
T 3q7m_A 240 GVVFALAY-NGNLTALDLRSGQIMWKR---ELGSVNDFIVD--GNRIYLVDQ--NDRVMALTIDGGVTLWTQSDLLHRLL 311 (376)
T ss_dssp TEEEEECT-TSCEEEEETTTCCEEEEE---CCCCEEEEEEE--TTEEEEEET--TCCEEEEETTTCCEEEEECTTTTSCC
T ss_pred CEEEEEec-CcEEEEEECCCCcEEeec---cCCCCCCceEE--CCEEEEEcC--CCeEEEEECCCCcEEEeecccCCCcc
Confidence 88888754 4678888885 5433221 23446677775 789999985 4688888875 433222210111122
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
...++. +++||+.+. .+.|..++...+
T Consensus 312 ~~~~~~--~~~l~v~~~--~g~l~~~d~~tG 338 (376)
T 3q7m_A 312 TSPVLY--NGNLVVGDS--EGYLHWINVEDG 338 (376)
T ss_dssp CCCEEE--TTEEEEECT--TSEEEEEETTTC
T ss_pred cCCEEE--CCEEEEEeC--CCeEEEEECCCC
Confidence 334443 578888765 567888886544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=92.73 E-value=5.7 Score=36.20 Aligned_cols=226 Identities=10% Similarity=0.109 Sum_probs=123.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
..+.++++.+++..|... ..+.+...+++.. ...... ......+++ ..+.+.++-...+.|...| .+|+..
T Consensus 20 ~~V~~v~fs~dg~~la~g--~~~~~~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~ 94 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILS--TLKSFEIYNVHPVAHIMSQE---MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV 94 (355)
T ss_dssp CCCCEEEECTTSSEEEEE--CSSEEEEEEETTEEEEEEEE---CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCEEEEE--cCCEEEEEecCCcceeeeee---cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE
Confidence 577889999987766433 3345666776655 222211 112223333 4556666666666788788 566555
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC-
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN- 170 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~- 170 (377)
..+.....+.++.+ ++ ..++++.... |+..++...
T Consensus 95 ~~~~~~~~v~~v~~-~~-----------------------------------------~~~~~~~~~~--i~i~d~~~~~ 130 (355)
T 3vu4_A 95 SRIKVDAPVKDLFL-SR-----------------------------------------EFIVVSYGDV--ISVFKFGNPW 130 (355)
T ss_dssp EEEECSSCEEEEEE-CS-----------------------------------------SEEEEEETTE--EEEEESSTTC
T ss_pred EEEECCCceEEEEE-cC-----------------------------------------CEEEEEEcCE--EEEEECCCCc
Confidence 54442222334433 11 1244444443 887777654
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEE-EcCCCcEEEEEcCCCC---------------c-EEEEeccccCCCCC
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWV-DIDHGTISRTHRDGTG---------------R-ENIIEYVETGDPTP 233 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~s-d~~~~~I~~~~~~G~~---------------~-~~i~~~~~~~~~~~ 233 (377)
.. ... +.. .....++.+ +.+.++ ....+.|...++.... . ..... ..
T Consensus 131 ~~--~~~---~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~h 194 (355)
T 3vu4_A 131 KR--ITD---DIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-------AH 194 (355)
T ss_dssp CB--SSC---CEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-------CC
T ss_pred ee--eEE---ecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-------cc
Confidence 21 000 011 111223333 555555 3456778877776432 0 12222 23
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCE-EEEEEcCCC-eEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKENV-IEVARLTGQ-YRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~~~-I~~~~~~g~-~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
-..+.++++.+ .+.+..+-...++ |.+-++... ...++... ......+++++|...+|.-+.. ...|...++.
T Consensus 195 ~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~--d~~v~iw~~~ 270 (355)
T 3vu4_A 195 TNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD--KWTLHVFEIF 270 (355)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET--TCEEEEEESS
T ss_pred CCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC--CCEEEEEEcc
Confidence 44588999997 4556667666777 999999754 44444322 3456789999996666655543 3566666654
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.66 E-value=1.8 Score=43.18 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred CCCceEEEEEECCCCEEEEEEcC---------------------CCcEEEEEcCCCC-------cEEEEeccccC-----
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDID---------------------HGTISRTHRDGTG-------RENIIEYVETG----- 229 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~---------------------~~~I~~~~~~G~~-------~~~i~~~~~~~----- 229 (377)
.+.++.++.+++.++.||++-.. .|.|+++..++.. .+.++......
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 45689999999999999998542 2579999876432 12222111100
Q ss_pred ---------CCCCCCCcceEEEeccCCeEEEE-cCC-----------CCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcC
Q psy5792 230 ---------DPTPVDQFTDIAVDWIAQNIYWS-DPK-----------ENVIEVARLT-GQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 230 ---------~~~~~~~p~~iavD~~~~~lYwt-d~~-----------~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp 287 (377)
....+..|.+|++|+ .++||++ |.. ++.+...... |+.++.+..-......|+++.|
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred ccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 113467899999997 5678776 432 3567777776 4444444333456788999999
Q ss_pred CCCeEEEEec
Q psy5792 288 ESGYLFWSES 297 (377)
Q Consensus 288 ~~g~lywtd~ 297 (377)
....||+.-.
T Consensus 541 Dg~tlfvniQ 550 (592)
T 3zwu_A 541 DQKTLFVGIQ 550 (592)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 8889998854
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.63 E-value=10 Score=38.83 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=100.7
Q ss_pred EEEEEeCCCC----eEEEEEcCCC-CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC----CcEEEEEcCCCCc--
Q psy5792 151 FILFSVNSGY----DIMGIKYNKN-ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH----GTISRTHRDGTGR-- 219 (377)
Q Consensus 151 ~l~~s~~~~~----~I~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~----~~I~~~~~~G~~~-- 219 (377)
.|.|+....| .|+.+++++. .. +...+ .. ...++++.+.++.||++.... .+|++.++++...
T Consensus 188 ~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~---~~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~ 261 (751)
T 2xe4_A 188 LVAFSVDMSGNEVYTIEFKRISDPSQT-IADKV---SG--TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSED 261 (751)
T ss_dssp EEEEEEESSSSSCEEEEEEETTCTTCC-CCCCE---EE--ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC
T ss_pred EEEEEEeCCCCceEEEEEEECCCCCEe-CCccc---cC--ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhc
Confidence 4555543322 3888898876 42 00101 00 123456666677888886532 3799999976532
Q ss_pred EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC--CCCEEEEEEcCCC--eE--EEEeeCCCCCceeEEEc-CCCCeE
Q psy5792 220 ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP--KENVIEVARLTGQ--YR--YVLISGGVDQPSALAVD-PESGYL 292 (377)
Q Consensus 220 ~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~--~~~~I~~~~~~g~--~~--~~l~~~~~~~P~~iavd-p~~g~l 292 (377)
+.+... ..-..-.++++.+.++.|+|+.. ....|++.++++. .. +.+... ...|. ..++ ...+.|
T Consensus 262 ~lv~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~-~s~~~~~g~~l 333 (751)
T 2xe4_A 262 VCLYEE------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVR-YDVQMHGTSHL 333 (751)
T ss_dssp EEEEEC------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCC-EEEEEETTTEE
T ss_pred EEEEec------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCce-EEEeeeeCCEE
Confidence 234330 11112335566666777887643 3457999999864 22 334332 22221 2233 236777
Q ss_pred EEEe-cC--CCCeEEEEecCC-CCeEE-EEecCCC-CceEEEEeCCCCEEEEEEeCCC--CeEEEEEc
Q psy5792 293 FWSE-SG--KIPLIARAGLDG-KKQTI-LAQEIIM-PIKDITLDRKNKRVYWCYSVGS--NVLESMDY 352 (377)
Q Consensus 293 ywtd-~g--~~~~I~r~~ldG-~~~~~-l~~~~~~-~P~glalD~~~~~LYw~d~~~~--~~i~~~~~ 352 (377)
||.. .. .+.+|+++++++ ...+. ++..... ...++++ .+++||++.. .. ..|..+++
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~~g~~~l~~~dl 398 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-RAGLTRIWTMMA 398 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-ETTEEEEEEEEC
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-eCCEEEEEEEec
Confidence 7654 32 357999999885 33333 4443211 2345555 4688888766 43 46777775
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.46 E-value=2.8 Score=41.87 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=72.2
Q ss_pred CCCCCcceEEEeccCCeEEEEcCC---------------------CCEEEEEEcCCCe------E-EEEe-e--------
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPK---------------------ENVIEVARLTGQY------R-YVLI-S-------- 274 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~---------------------~~~I~~~~~~g~~------~-~~l~-~-------- 274 (377)
..+.+|+++++++.++.+|++-.+ .+.|++..+++.. . ..++ .
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 456789999999999999998542 2579999876431 1 1121 1
Q ss_pred ------------CCCCCceeEEEcCCCCeEEEEecCC-----------CCeEEEEecCCCCeEEEEec-CCCCceEEEEe
Q psy5792 275 ------------GGVDQPSALAVDPESGYLFWSESGK-----------IPLIARAGLDGKKQTILAQE-IIMPIKDITLD 330 (377)
Q Consensus 275 ------------~~~~~P~~iavdp~~g~lywtd~g~-----------~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD 330 (377)
..+..|-.|++|| .|.|++++-+. +..+..........+.++.. .-....|+++.
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs 539 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred cccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC
Confidence 1267899999998 67788876542 23455555443333333332 12467899998
Q ss_pred CCCCEEEEEEe
Q psy5792 331 RKNKRVYWCYS 341 (377)
Q Consensus 331 ~~~~~LYw~d~ 341 (377)
+..+.||+.-.
T Consensus 540 pDg~tlfvniQ 550 (592)
T 3zwu_A 540 PDQKTLFVGIQ 550 (592)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 88889998766
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.00 E-value=7.5 Score=35.88 Aligned_cols=185 Identities=10% Similarity=-0.027 Sum_probs=104.9
Q ss_pred EEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 153 ~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
+++....+.|+..++..... +..+. ....+.++++.+.+..|+-+. ..+.|...++..........
T Consensus 138 l~s~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~------- 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKI-----VMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLS------- 204 (393)
T ss_dssp EEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE-------
T ss_pred EEEEcCCCeEEEEECCCCcE-----EEEEccCCCCEEEEEEcCCCCEEEEec-CCCcEEEEECCCCeeEEEEE-------
Confidence 33333334688888876522 22222 334578999998777665444 56888888887533222222
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE-EEe------eCCCCCceeEEEcCCCCeEEEEecCCCCeEE
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY-VLI------SGGVDQPSALAVDPESGYLFWSESGKIPLIA 304 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~-~l~------~~~~~~P~~iavdp~~g~lywtd~g~~~~I~ 304 (377)
.-..+..+++.+..++++.+-...+.|.+.++...... .+. ........+++++|...+|+-... ...|.
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--d~~v~ 281 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--DRSVK 281 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET--TSEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC--CCEEE
Confidence 22357788888766777777777788998888755432 221 122345689999986666655543 35666
Q ss_pred EEecCCCC-------------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 305 RAGLDGKK-------------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 305 r~~ldG~~-------------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
..++.... ...+. ..-.....+++.+.+..|. +-. ..+.|...+...+.
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-sgs-~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYIL-SGS-KDRGVLFWDKKSGN 343 (393)
T ss_dssp EEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEE-EEE-TTSEEEEEETTTCC
T ss_pred EEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEE-EEe-CCCeEEEEECCCCe
Confidence 55554211 11111 1123455677765444443 444 55667666665443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=91.75 E-value=6.6 Score=34.71 Aligned_cols=180 Identities=11% Similarity=-0.009 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.+.|+......... ...............+.+.+..|.... ..+.+...+..+........ ......+.
T Consensus 107 d~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~~~~~d~~~~~~~~~~~------~~~~~~v~ 175 (340)
T 4aow_A 107 DGTLRLWDLTTGTT----TRRFVGHTKDVLSVAFSSDNRQIVSGS-RDKTIKLWNTLGVCKYTVQD------ESHSEWVS 175 (340)
T ss_dssp TSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEEEECTTSCEEEEECS------SSCSSCEE
T ss_pred cccceEEeecccce----eeeecCCCCceeEEEEeecCccceeec-CCCeEEEEEeCCCceEEEEe------ccccCccc
Confidence 34566666655422 222223334455566666555554443 45667666665433322221 01123356
Q ss_pred eEEEeccCC-eEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEE
Q psy5792 239 DIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 239 ~iavD~~~~-~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~ 317 (377)
.+++.+... .++.+-...+.|...++.................+++++|...+|+-+.. ...|...++.........
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK--DGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TCEEEEEETTTTEEEEEE
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC--CCeEEEEEeccCceeeee
Confidence 677765443 45566666678988898876654444444455789999996555555442 467777777654433333
Q ss_pred ecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 318 QEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 318 ~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.. -.....++..+ ++.+.. -. ..+.|...++++.
T Consensus 254 ~~-~~~v~~~~~~~-~~~~~~-~~-~d~~i~iwd~~~~ 287 (340)
T 4aow_A 254 DG-GDIINALCFSP-NRYWLC-AA-TGPSIKIWDLEGK 287 (340)
T ss_dssp EC-SSCEEEEEECS-SSSEEE-EE-ETTEEEEEETTTT
T ss_pred cC-CceEEeeecCC-CCceee-cc-CCCEEEEEECCCC
Confidence 32 23455666653 333333 33 3466766676654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=91.61 E-value=7.1 Score=34.79 Aligned_cols=263 Identities=11% Similarity=0.022 Sum_probs=127.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-E---EEEEeCCCCCceEEEEEE---CCeEEEEcCCCCceEEEc-CC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-V---AKVVSMPDAAQVVAAVFY---KGRIIYSDANDGNIRSIN-LD 87 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~---~~i~~~~~~~~p~~lav~---~~~ly~td~~~~~I~~~~-~~ 87 (377)
+.+.++++++.+.+| .+-+..+.|...|+... . .++. .+......+++. ++.+..+-..++.|...+ .+
T Consensus 14 ~~V~~v~~s~~g~~l-asgs~D~~v~lwd~~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRL-ATCSSDRSVKIFDVRNGGQILIADLR--GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp CCEEEEEECGGGCEE-EEEETTTEEEEEEEETTEEEEEEEEE--CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred CeEEEeeEcCCCCEE-EEEeCCCeEEEEEecCCCcEEEEEEc--CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 356778888776555 44456778888887644 2 2332 445567788873 255666666677888888 44
Q ss_pred CCc--eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 88 GSN--STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 88 g~~--~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
|+. ...+..... +..+.+ +|+.. ..++++....+.|+.
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~-~p~~~--------------------------------------g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCW-APHDY--------------------------------------GLILACGSSDGAISL 131 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEE-CCTTT--------------------------------------CSCEEEECSSSCEEE
T ss_pred CcceEEEEccCCCCceEEEEE-CCCCC--------------------------------------CcEEEEEcCCCCEEE
Confidence 532 222222222 344433 22100 113333333345666
Q ss_pred EEcCCCCceeeEEEEecC-CCCceEEEEEECCC----------------CEEEEEEcCCCcEEEEEcCCCCc-EEEEecc
Q psy5792 165 IKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAE----------------DYIYWVDIDHGTISRTHRDGTGR-ENIIEYV 226 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~----------------~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~ 226 (377)
.++..... ......+. .......+++.+.. +.++.+-...+.|...++..... +.+...
T Consensus 132 wd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l- 208 (316)
T 3bg1_A 132 LTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL- 208 (316)
T ss_dssp EEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-
T ss_pred EecCCCCC--cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-
Confidence 66544321 00000011 11123334444321 23445544556666666653321 222210
Q ss_pred ccCCCCCCCCcceEEEeccC---CeEEEEcCCCCEEEEEEcCCC----eEEEEeeCCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 227 ETGDPTPVDQFTDIAVDWIA---QNIYWSDPKENVIEVARLTGQ----YRYVLISGGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~---~~lYwtd~~~~~I~~~~~~g~----~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
...-..+.++++.+.. +.+..+-...++|..-+++.. ....++.........+++.|....|.-+....
T Consensus 209 ----~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 209 ----EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284 (316)
T ss_dssp ----BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred ----ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 0122347778887643 256677677788888887652 11122222234568999998666665554322
Q ss_pred CCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 300 ~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
.-+|+....+|. ...+.. +..+.|.+++
T Consensus 285 ~v~lw~~~~~g~--~~~~~~-~~~~~~~~~~ 312 (316)
T 3bg1_A 285 KVTLWKESVDGQ--WVCISD-VNKGQGSVSA 312 (316)
T ss_dssp CEEEEEECTTSC--EEEEEE-CC--------
T ss_pred eEEEEEECCCCc--EEEeee-ccCCCCceee
Confidence 345666655554 222222 4445555543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.40 E-value=7.9 Score=34.96 Aligned_cols=281 Identities=12% Similarity=0.047 Sum_probs=141.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--E-EEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCc-
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--V-AKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSN- 90 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~-~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~- 90 (377)
.+..++..+++..|. +-+..+.|..-++++. . ..............|++ .++....+-..++.|...+ ..+..
T Consensus 18 ~v~~l~~sp~g~~la-s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLA-SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE 96 (345)
T ss_dssp CEEEEEECTTSSCEE-EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred cEEEEEECCCCCEEE-EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence 456788888766653 4455678888888765 2 22222234456778888 3444444444556666666 33322
Q ss_pred -eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 91 -STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 91 -~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
...+..... +..+++ +++.. ++++....+.|+..++.
T Consensus 97 ~~~~~~~h~~~v~~v~~-sp~~~----------------------------------------~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAW-APSGN----------------------------------------LLATCSRDKSVWVWEVD 135 (345)
T ss_dssp EEEEECCCSSCEEEEEE-CTTSS----------------------------------------EEEEEETTSCEEEEEEC
T ss_pred EEEEccCCCCCceEEEE-eCCCC----------------------------------------EEEEEECCCeEEEEECC
Confidence 223332222 444443 23221 33333333458777776
Q ss_pred CCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEE--EeccccCCCCCCCCcceEEEecc
Q psy5792 169 KNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI--IEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i--~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
.... ...+..+. ....+..+++.+.+..|.... ..+.|...+........+ .. .....+.+|++++.
T Consensus 136 ~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 136 EEDE--YECVSVLNSHTQDVKHVVWHPSQELLASAS-YDDTVKLYREEEDDWVCCATLE-------GHESTVWSLAFDPS 205 (345)
T ss_dssp TTSC--EEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECTT
T ss_pred CCCC--eEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCCcEEEEEecCCCEEEEEEec-------CCCCceEEEEECCC
Confidence 5432 12222222 234578899988666555444 566777766654322211 22 23345889999975
Q ss_pred CCeEEEEcCCCCEEEEEEc--CCCe--------------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 246 AQNIYWSDPKENVIEVARL--TGQY--------------RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~--~g~~--------------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+..| .+-...++|.+-+. .+.. ..++..........++..|..+.|.-+.. ...|...+.+
T Consensus 206 g~~l-~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~vw~~~ 282 (345)
T 3fm0_A 206 GQRL-ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG--DDAIRVFQED 282 (345)
T ss_dssp SSEE-EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET--TSCEEEEEEC
T ss_pred CCEE-EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC--CCeEEEEEeC
Confidence 5444 55444555555443 2211 01111112344678888887776665543 2445444443
Q ss_pred CCC-----eEEE-Ee---cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 310 GKK-----QTIL-AQ---EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 310 G~~-----~~~l-~~---~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
... ...+ .. ..-...+.++..+....+..+-. ..++|.--+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s-~Dg~v~~W~~~ 334 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS-DDGEVAFWKYQ 334 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE-TTSCEEEEEEC
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC-CCCcEEEEEec
Confidence 221 1111 11 11234566777655444555544 45555544444
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.31 E-value=9.2 Score=35.50 Aligned_cols=217 Identities=9% Similarity=-0.006 Sum_probs=108.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCC---c--E--EEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEcC-
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV---K--V--AKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSINL- 86 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG---~--~--~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~- 86 (377)
+.+.++++.+.++.++.+-+..+.|..-++.. . . .... ........|++. ++..+++-..++.|...+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 45677777772334445555667777777654 1 1 1111 234456778883 3444455455667776662
Q ss_pred ---CCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 87 ---DGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 87 ---~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
+|+........ ....+.+ ++... .....|+. .+..++..++++....+.|+
T Consensus 142 ~~~~~~~~~~~~~~-~i~~~~~-~~~~~-------------~~~~~~~~-----------~~~~~~~~~l~~~~~d~~i~ 195 (437)
T 3gre_A 142 HYQQESEVKFLNCE-CIRKINL-KNFGK-------------NEYAVRMR-----------AFVNEEKSLLVALTNLSRVI 195 (437)
T ss_dssp EEEETTEEEEEEEE-EEEEEEG-GGGSS-------------CCCEEEEE-----------EEECSSCEEEEEEETTSEEE
T ss_pred cccCCceeeccccc-eeEEEEc-cCccc-------------ccCceEEE-----------EEEcCCCCEEEEEeCCCeEE
Confidence 44443332210 0111111 11000 00001110 00011223444444445688
Q ss_pred EEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 164 GIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
..++..... ...+........+.++++++.+..|.... ..+.|...++........... ..-..+..+++.
T Consensus 196 iwd~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~ 266 (437)
T 3gre_A 196 IFDIRTLER--LQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSF------GDHAPITHVEVC 266 (437)
T ss_dssp EEETTTCCE--EEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBC------TTCEEEEEEEEC
T ss_pred EEeCCCCee--eEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEec------CCCCceEEEEec
Confidence 888876543 11111111245688999998766665554 568888888864222111110 112235667655
Q ss_pred cc---CCeEEEEcCCCCEEEEEEcCCCeE
Q psy5792 244 WI---AQNIYWSDPKENVIEVARLTGQYR 269 (377)
Q Consensus 244 ~~---~~~lYwtd~~~~~I~~~~~~g~~~ 269 (377)
+. .+.+..+-...+.|.+.++.....
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence 42 355666777778899999975543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.27 E-value=16 Score=38.25 Aligned_cols=147 Identities=6% Similarity=-0.070 Sum_probs=86.1
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe-ccc---cC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE-YVE---TG 229 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~-~~~---~~ 229 (377)
++....+.|+..++..... ... +.....+..+++++..+.|+... .++.|...++++........ ... ..
T Consensus 73 ~S~s~D~~v~lWd~~~~~~--~~~---~~~~~~V~~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKV--LTT---VFVPGKITSIDTDASLDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFF 146 (902)
T ss_dssp EEEETTCEEEEEETTTCSE--EEE---EECSSCEEEEECCTTCSEEEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred EEEECcCeEEEEECCCCcE--EEE---EcCCCCEEEEEECCCCCEEEEEc-CCCcEEEEECCCCccccceeccccccccc
Confidence 3333344688888865533 111 22335688999999888888776 56889889887543221110 000 00
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC------------------CCCceeEEEcCCCCe
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG------------------VDQPSALAVDPESGY 291 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~------------------~~~P~~iavdp~~g~ 291 (377)
.....+.+.+|++.+..+.+..+-...+.| .-++........+... .....+++..|. |.
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~ 224 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SL 224 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SS
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CC
Confidence 002234588999998655566666667888 9998876543333221 134689999986 44
Q ss_pred EEEEecCCCCeEEEEecC
Q psy5792 292 LFWSESGKIPLIARAGLD 309 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ld 309 (377)
.+.+-. ....|...++.
T Consensus 225 ~lasgs-~Dg~i~lWd~~ 241 (902)
T 2oaj_A 225 HIITIH-EDNSLVFWDAN 241 (902)
T ss_dssp EEEEEE-TTCCEEEEETT
T ss_pred EEEEEE-CCCeEEEEECC
Confidence 444432 24566666664
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.24 E-value=8.8 Score=33.47 Aligned_cols=136 Identities=8% Similarity=-0.026 Sum_probs=76.1
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEE--cCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVD--IDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd--~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
++++....+.|+..++...................+..+++.+....+...- ...+.|...+...........
T Consensus 164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~----- 238 (318)
T 4ggc_A 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD----- 238 (318)
T ss_dssp EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----
T ss_pred EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-----
Confidence 3334433345887777643320001111122233456777766665555432 234567666666444333332
Q ss_pred CCCCCCCcceEEEeccCCeEEEEc-CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSD-PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd-~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
....+..+++.+..+.++.+. ...++|.+.++........+........++++.|.+.+|.-+
T Consensus 239 ---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 239 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 344577888888777777654 356789999987554433344445567899999865555443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=89.64 E-value=4.7 Score=38.24 Aligned_cols=125 Identities=6% Similarity=-0.088 Sum_probs=79.9
Q ss_pred CceEEEEEECCCCEEEE---EEcCCCcEEEEEcCCC-----Cc----EEEEeccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYW---VDIDHGTISRTHRDGT-----GR----ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~---sd~~~~~I~~~~~~G~-----~~----~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
..+.++++++.+..|++ +-...+.|...++... .. ..+... ...-..+.+|++.+..++++.+
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~las 167 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-----KDAGGMVIDMKWNPTVPSMVAV 167 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-----CSGGGSEEEEEECSSCTTEEEE
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-----CCCCCceEEEEECCCCCCEEEE
Confidence 35788999998888886 4444567777776421 10 111110 0112348889998766788888
Q ss_pred cCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 253 DPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 253 d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
-...++|.+.++...............+.+++.+|...+|+.... ...|...++.+.....+
T Consensus 168 ~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~--dg~v~iwd~~~~~~~~~ 229 (434)
T 2oit_A 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ--NGTVVQYLPTLQEKKVI 229 (434)
T ss_dssp EETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET--TSCEEEECTTCCEEEEE
T ss_pred EECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC--CCcEEEEccCCcccccc
Confidence 777888999998876432222222456899999997667776653 46788888775544433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=89.61 E-value=13 Score=34.59 Aligned_cols=177 Identities=12% Similarity=0.058 Sum_probs=96.6
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE---EEEecccc
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE---NIIEYVET 228 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~---~i~~~~~~ 228 (377)
++++....|.|+..++..... ...+ ......+.+++++ .+.++.. ...+.|...++...... ....
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~--~~~~--~~h~~~v~~l~~~--~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~---- 253 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEM--LNTL--IHHCEAVLHLRFN--NGMMVTC-SKDRSIAVWDMASPTDITLRRVLV---- 253 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCE--EEEE--CCCCSCEEEEECC--TTEEEEE-ETTSCEEEEECSSSSCCEEEEEEC----
T ss_pred EEEEEcCCCeEEEEECCCCcE--EEEE--cCCCCcEEEEEEc--CCEEEEe-eCCCcEEEEeCCCCCCceeeeEec----
Confidence 333333344688888876533 1111 1233456777775 4555544 46788888888654322 2222
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.....+..+++| ++.| ++-...+.|.+.++........+.........++.+ ...|+.... .+.|...++
T Consensus 254 ---~~~~~v~~~~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~--dg~i~iwd~ 323 (435)
T 1p22_A 254 ---GHRAAVNVVDFD--DKYI-VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS--DNTIRLWDI 323 (435)
T ss_dssp ---CCSSCEEEEEEE--TTEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET--TSCEEEEET
T ss_pred ---CCCCcEEEEEeC--CCEE-EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeC--CCeEEEEEC
Confidence 223346666664 4444 555556889999987655443344444556777775 345555542 467777777
Q ss_pred CCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 309 dG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
........+...-.....+++| ++.| .+-. ..+.|...++.
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~~--~~~l-~sg~-~dg~i~vwd~~ 364 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRFD--NKRI-VSGA-YDGKIKVWDLV 364 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEECC--SSEE-EEEE-TTSCEEEEEHH
T ss_pred CCCCEEEEEeCCcCcEEEEEec--CCEE-EEEe-CCCcEEEEECC
Confidence 6433333233222345556653 3444 4444 56677777664
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.1 Score=47.15 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=22.9
Q ss_pred CC-cCCC-CCCceeccccCCCccc---cCCcC
Q psy5792 117 IK-YNKN-ESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~-~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
.| |..+ ||+|+|.|.+..+++. +.||.
T Consensus 2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~ 33 (283)
T 3f1s_B 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYR 33 (283)
T ss_dssp -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEE
T ss_pred CCccCCCCCCCCCCEeeCCCCCeEecCCCCcc
Confidence 47 9887 8999999999999887 67876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=89.26 E-value=14 Score=34.32 Aligned_cols=260 Identities=7% Similarity=0.006 Sum_probs=142.7
Q ss_pred CCcEEEEEcCCc-EEEEEeC-CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCC
Q psy5792 37 SHSLHYVNIEVK-VAKVVSM-PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSG 111 (377)
Q Consensus 37 ~~~I~~~~~dG~-~~~i~~~-~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~ 111 (377)
.+.|+.-|.... ...++.. .......+|++ .++....+-..++.|...+ .+++....+..... ...+..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~------ 197 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW------ 197 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE------
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee------
Confidence 456666676554 3333322 23344678888 3445555555667888888 56655544432211 211111
Q ss_pred CcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEE
Q psy5792 112 YDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVD 191 (377)
Q Consensus 112 ~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 191 (377)
++.++.+....+.++..+...... ..............+.
T Consensus 198 -------------------------------------~~~~l~sgs~d~~i~~~d~~~~~~---~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 198 -------------------------------------NSYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGLR 237 (420)
T ss_dssp -------------------------------------ETTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEEE
T ss_pred -------------------------------------CCCEEEEEeCCCceeEeeecccce---eeEEecccccceeeee
Confidence 111333333333466666554433 1111112334567777
Q ss_pred EECCCCEEEEEEcCCCcEEEEEcCCCCc----EEEEeccccCCCCCCCCcceEEEeccCCeEEEEc--CCCCEEEEEEcC
Q psy5792 192 FHAAEDYIYWVDIDHGTISRTHRDGTGR----ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD--PKENVIEVARLT 265 (377)
Q Consensus 192 ~d~~~~~ly~sd~~~~~I~~~~~~G~~~----~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd--~~~~~I~~~~~~ 265 (377)
+.+.+..+... ...+.|...+...... ..... .....+..+++.+...+++.+- ...++|...++.
T Consensus 238 ~~~~g~~l~s~-~~D~~v~i~~~~~~~~~~~~~~~~~-------~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 238 WAPDGRHLASG-GNDNLVNVWPSAPGEGGWVPLQTFT-------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp ECTTSSEEEEE-ETTSCEEEEESSCCSSCSCCSEEEC-------CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ecCCCCeeeee-eccccceEEeeccccccceeeeeec-------ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 77755555444 3567777777653221 11111 2334577888887777777653 345789999987
Q ss_pred CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 266 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 266 g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
.......+.. ...+..++..|..+.++.+.......|...++........+..--.....+++.+.+..| .+-. ..+
T Consensus 310 t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l-~S~s-~D~ 386 (420)
T 4gga_A 310 SGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAA-ADE 386 (420)
T ss_dssp TTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEE-TTT
T ss_pred ccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEe-cCC
Confidence 7655444443 456788999988888877753235678777776433322233223456788987654444 4444 566
Q ss_pred eEEEEEcc
Q psy5792 346 VLESMDYS 353 (377)
Q Consensus 346 ~i~~~~~~ 353 (377)
+|.-=++.
T Consensus 387 tvriWdv~ 394 (420)
T 4gga_A 387 TLRLWRCF 394 (420)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 66655554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.92 E-value=13 Score=33.42 Aligned_cols=157 Identities=10% Similarity=0.070 Sum_probs=93.4
Q ss_pred CceEEEEEEC--CCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 185 SLAAKVDFHA--AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 185 ~~~~~l~~d~--~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
..+..+++++ .+..+.... ..+.|...++.......+... ..-..+..+++.+ .+.++.+-...+.|.+.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~------~~~~~i~~~~~~p-dg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWAD-NRGTIGFQSYEDDSQYIVHSA------KSDVEYSSGVLHK-DSLLLALYSPDGILDVY 197 (343)
T ss_dssp SCEEEEECCC---CCEEEEEE-TTCCEEEEESSSSCEEEEECC------CSSCCCCEEEECT-TSCEEEEECTTSCEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEe-CCCcEEEEECCCCcEEEEEec------CCCCceEEEEECC-CCCEEEEEcCCCEEEEE
Confidence 4578888887 555554444 678898889875443333320 1222478899997 45666666677889999
Q ss_pred EcCCCeEE-EEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe-EEEEe-cCCCCc---eEEEEeCCCCE
Q psy5792 263 RLTGQYRY-VLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ-TILAQ-EIIMPI---KDITLDRKNKR 335 (377)
Q Consensus 263 ~~~g~~~~-~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~-~~l~~-~~~~~P---~glalD~~~~~ 335 (377)
++...... ..+.. .......+++.|...+|..+.. . .|...++..... ..+.. ..-..+ ..+++++.+..
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD--Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES--S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC--C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 99765433 22332 3456799999996666666652 2 777777764322 11110 000011 34888876666
Q ss_pred EEEEEeCCCCeEEEEEcc
Q psy5792 336 VYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~ 353 (377)
|..+.. ..+.|...+++
T Consensus 275 l~~~s~-~d~~i~v~~~~ 291 (343)
T 3lrv_A 275 MIAYSN-ESNSLTIYKFD 291 (343)
T ss_dssp EEEEET-TTTEEEEEEEC
T ss_pred EEEecC-CCCcEEEEEEc
Confidence 666544 46667666664
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=88.79 E-value=12 Score=32.91 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=97.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCC-CEEEEEEcCCCcEEEEEcCCCC--cEEEEeccc
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAE-DYIYWVDIDHGTISRTHRDGTG--RENIIEYVE 227 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~-~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~ 227 (377)
++++....+.|+.-++..... ..+..+. ....+..+++.+.. +.++.+-...+.|...++.... ......
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~---~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~--- 142 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRW---SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID--- 142 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---
T ss_pred EEEEEcCCCEEEEEEcCCCce---EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---
Confidence 444444445688778765422 0111111 23457788888752 3344444466788888876432 122222
Q ss_pred cCCCCCCCCcceEEEeccC------------CeEEEEcCCCCEEEEEEcCCCe----EEEEeeCCCCCceeEEEcCCC--
Q psy5792 228 TGDPTPVDQFTDIAVDWIA------------QNIYWSDPKENVIEVARLTGQY----RYVLISGGVDQPSALAVDPES-- 289 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~------------~~lYwtd~~~~~I~~~~~~g~~----~~~l~~~~~~~P~~iavdp~~-- 289 (377)
........+++.+.. ++++.+-...++|...+++... ....+.......++++.+|..
T Consensus 143 ----~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 143 ----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp ----CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred ----cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 233346677776532 3566676666778877776432 112223334557899999864
Q ss_pred CeEEEEecCCCCeEEEEecCCC---CeEEEEe-cC-CCCceEEEEeCCCCEEEEEEeCCCC--eEEEEEccC
Q psy5792 290 GYLFWSESGKIPLIARAGLDGK---KQTILAQ-EI-IMPIKDITLDRKNKRVYWCYSVGSN--VLESMDYSG 354 (377)
Q Consensus 290 g~lywtd~g~~~~I~r~~ldG~---~~~~l~~-~~-~~~P~glalD~~~~~LYw~d~~~~~--~i~~~~~~G 354 (377)
+.++.+-. ....|..-+++.. ....+.. .. -.....+++.+.+..|..+. ..+ +|+..+.+|
T Consensus 219 ~~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~--~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 219 RSYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKENLEG 287 (297)
T ss_dssp SEEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE--TTSCEEEEEECTTS
T ss_pred ceEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc--CCCcEEEEEECCCC
Confidence 45555433 2345555555432 1222321 11 23356678876555554443 333 344444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.74 E-value=11 Score=32.71 Aligned_cols=259 Identities=7% Similarity=0.001 Sum_probs=137.5
Q ss_pred CCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCC
Q psy5792 36 LSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNS 110 (377)
Q Consensus 36 ~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~ 110 (377)
..+.|+.-|++.. .+++...........+++ .++....+-..++.|...+ .+|+....+..... ...+. .
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~---~-- 117 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---W-- 117 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE---E--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee---c--
Confidence 3567888887654 444431233345678888 4455556656677888888 66655544432211 11111 0
Q ss_pred CCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEE
Q psy5792 111 GYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKV 190 (377)
Q Consensus 111 ~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l 190 (377)
...++.+....+.++......... ..............+
T Consensus 118 --------------------------------------~~~~l~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 156 (318)
T 4ggc_A 118 --------------------------------------NSYILSSGSRSGHIHHHDVRVAEH---HVATLSGHSQEVCGL 156 (318)
T ss_dssp --------------------------------------ETTEEEEEETTSEEEEEETTSSSC---EEEEEECCSSCEEEE
T ss_pred --------------------------------------CCCEEEEEecCCceEeeecCCCce---eEEEEcCccCceEEE
Confidence 011233332223344444443322 111112233456677
Q ss_pred EEECCCCEEEEEEcCCCcEEEEEcCCCC----cEEEEeccccCCCCCCCCcceEEEeccCCeEEEE--cCCCCEEEEEEc
Q psy5792 191 DFHAAEDYIYWVDIDHGTISRTHRDGTG----RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS--DPKENVIEVARL 264 (377)
Q Consensus 191 ~~d~~~~~ly~sd~~~~~I~~~~~~G~~----~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwt--d~~~~~I~~~~~ 264 (377)
++...+..|. +-...+.|...++.... ...... ...+.+..++..+...++..+ ....+.|...+.
T Consensus 157 ~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~ 228 (318)
T 4ggc_A 157 RWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFT-------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228 (318)
T ss_dssp EECTTSSEEE-EEETTSCEEEEESSCBTTBSCCSEEEC-------CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred EEcCCCCEEE-EEecCcceeEEECCCCcccccceeeec-------ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence 7777555555 44456788877775321 111111 223346677777767766543 344578888888
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
.......... .......++..|..+.++.+.......|...++........+..--.....+++.+.+..| .+-. ..
T Consensus 229 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l-~S~s-~D 305 (318)
T 4ggc_A 229 CSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAA-AD 305 (318)
T ss_dssp TTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEE-TT
T ss_pred cccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEe-cC
Confidence 7765544443 3455788888988888877653235677777776433332232223456778886544433 3434 44
Q ss_pred CeEEEEE
Q psy5792 345 NVLESMD 351 (377)
Q Consensus 345 ~~i~~~~ 351 (377)
++|..=+
T Consensus 306 ~~v~iWd 312 (318)
T 4ggc_A 306 ETLRLWR 312 (318)
T ss_dssp TEEEEEC
T ss_pred CeEEEEE
Confidence 5554433
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=13 Score=33.39 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEE--EeccccCCCCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENI--IEYVETGDPTPVDQ 236 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i--~~~~~~~~~~~~~~ 236 (377)
.|+..+++.... ..+..+.+ ...+.++++.+.++.|.-. ...+.|...+++.... +.+ .. .....
T Consensus 84 ~v~iw~~~~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~-------~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDDF---ECVTTLEGHENEVKSVAWAPSGNLLATC-SRDKSVWVWEVDEEDEYECVSVLN-------SHTQD 152 (345)
T ss_dssp CEEEEEECCC-E---EEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECTTSCEEEEEEEC-------CCCSC
T ss_pred cEEEEEccCCCe---EEEEEccCCCCCceEEEEeCCCCEEEEE-ECCCeEEEEECCCCCCeEEEEEec-------CcCCC
Confidence 466666554432 12222332 3457899999866555544 4567888888764332 222 22 23345
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+..+++.+... +..+-...+.|...++...... ..+........+++++|...+|.-......-+|+.....
T Consensus 153 v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 153 VKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 77888887544 4455555567887777654322 223334556789999996666665543224466665443
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=88.61 E-value=0.15 Score=33.18 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=17.8
Q ss_pred CCCceeccccCCCccc---cCCcC
Q psy5792 123 ESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 123 ~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+++|+|.|++.+++|. +.||.
T Consensus 19 ~~~C~~~C~n~~Gsy~C~C~~Gy~ 42 (53)
T 1apq_A 19 QPQCQHLCHNYVGGYFCSCRPGYE 42 (53)
T ss_dssp SCTTSSEEEEETTEEEEECSTTCE
T ss_pred CCCCCCEeECCCCCeEEECCCCCe
Confidence 4789999999999988 67764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=88.55 E-value=22 Score=35.83 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCCcEEEEEcCC-cEEEEEeCCCC----------CceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEE
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEV-KVAKVVSMPDA----------AQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVL 94 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG-~~~~i~~~~~~----------~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~ 94 (377)
+++||+... .+.|.-+|... +...-...... ....++++.+++||+... .+.|..+| .+|+..-.+
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-CCEEEEEECCCCCEEeee
Confidence 568988865 46789999754 43332211110 112467889999999854 46899999 788775444
Q ss_pred e
Q psy5792 95 R 95 (377)
Q Consensus 95 ~ 95 (377)
.
T Consensus 155 ~ 155 (677)
T 1kb0_A 155 N 155 (677)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=87.79 E-value=26 Score=35.74 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCEEEEEEcCCC----cEEEEEc---CCC--CcEEEEeccccCCCCCCCCcceEEEe-ccCCeEEEEcCCC----CEEEE
Q psy5792 196 EDYIYWVDIDHG----TISRTHR---DGT--GRENIIEYVETGDPTPVDQFTDIAVD-WIAQNIYWSDPKE----NVIEV 261 (377)
Q Consensus 196 ~~~ly~sd~~~~----~I~~~~~---~G~--~~~~i~~~~~~~~~~~~~~p~~iavD-~~~~~lYwtd~~~----~~I~~ 261 (377)
++++||+....+ .++|... +|. ..+++..........+.-...+.++. +.++.|.|+.... .+|++
T Consensus 126 g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v 205 (751)
T 2xe4_A 126 GKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEF 205 (751)
T ss_dssp TTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEE
T ss_pred CCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEE
Confidence 789999865444 3667776 565 55666652111000111134566777 7777777664432 35999
Q ss_pred EEcCCC-eEEEEeeCCCC-CceeEEEcCCCCeEEEEecCC---CCeEEEEecCCCC--eEEEEec-CCCCceEEEEeCCC
Q psy5792 262 ARLTGQ-YRYVLISGGVD-QPSALAVDPESGYLFWSESGK---IPLIARAGLDGKK--QTILAQE-IIMPIKDITLDRKN 333 (377)
Q Consensus 262 ~~~~g~-~~~~l~~~~~~-~P~~iavdp~~g~lywtd~g~---~~~I~r~~ldG~~--~~~l~~~-~~~~P~glalD~~~ 333 (377)
.++++. .. +...+. ...+++..|.+..||++.... ..+|++.++++.. .+.+..+ .-..-.++.+.+.+
T Consensus 206 ~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg 282 (751)
T 2xe4_A 206 KRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT 282 (751)
T ss_dssp EETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred EECCCCCEe---CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence 999876 41 111111 124677888777888876421 2479999998754 2344432 11233467787778
Q ss_pred CEEEEEEeC-CCCeEEEEEccCC
Q psy5792 334 KRVYWCYSV-GSNVLESMDYSGG 355 (377)
Q Consensus 334 ~~LYw~d~~-~~~~i~~~~~~G~ 355 (377)
++|+|+... ....|+.++++++
T Consensus 283 ~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 283 NTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp SEEEEEEECSSCEEEEEEESSSC
T ss_pred CEEEEEecCCCCceEEEEECCCC
Confidence 889887651 3457888888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=86.98 E-value=17 Score=32.62 Aligned_cols=185 Identities=12% Similarity=0.011 Sum_probs=103.0
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++++....+.|+..++..... ...+ ......+.++++.+.+..|.-+. ..+.|...++.+........ ..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~--~~~~--~~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~-----~~ 159 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTT--YKRF--VGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGECKFSSAE-----KE 159 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCE--EEEE--ECCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSCEEEECCT-----TT
T ss_pred EEEEEcCCCcEEEEECCCCcE--EEEE--cCCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCCceeeeec-----cc
Confidence 344444445688888765533 1111 12334578999998777766554 56788888887432211110 00
Q ss_pred CCCCCcceEEEeccC---------CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 232 TPVDQFTDIAVDWIA---------QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 232 ~~~~~p~~iavD~~~---------~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
........+++.+.. +.++.+-...++|.+.+..+.....+. ........++++|...+|.-... ...
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~--dg~ 236 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGK--DKK 236 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEET--TCE
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEcC--CCe
Confidence 112235677776543 145566666788888886665444443 33456789999996555555442 467
Q ss_pred EEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 303 IARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 303 I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
|...++. .......... -.....+++.+....|... ..+.|...++.
T Consensus 237 v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~~la~~---~d~~v~iw~~~ 284 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAVG---TDQGVKIFNLM 284 (343)
T ss_dssp EEEEESSCCSSCSEEEEC-SSCEEEEEECSSSCEEEEE---ESSCEEEEESS
T ss_pred EEEEECCCCcccceeecC-CCcEEEEEECCCCCEEEEE---CCCCEEEEEeC
Confidence 7777763 3322222222 2346788887655444332 23446556654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=86.04 E-value=19 Score=32.50 Aligned_cols=192 Identities=13% Similarity=0.011 Sum_probs=101.2
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCC-CceEE
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDG-SNSTV 93 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g-~~~~~ 93 (377)
...++..+..+.+..+-...+.|...|.... ...+. ......++++..+.++++. .+.|...+ .++ +....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSY--GDVISVFKFGNPWKRITD 135 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEE--TTEEEEEESSTTCCBSSC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEE--cCEEEEEECCCCceeeEE
Confidence 4445555556666666666677888887544 44442 2335666777666666653 34566666 333 22211
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE-eCCCCeEEEEEcCCCCc
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS-VNSGYDIMGIKYNKNES 172 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s-~~~~~~I~~~~l~~~~~ 172 (377)
+.. +.++..+.+ ..+.++ ....|.|+..++.....
T Consensus 136 ~~~---~~~~~~~s~-----------------------------------------~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 136 DIR---FGGVCEFSN-----------------------------------------GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp CEE---EEEEEEEET-----------------------------------------TEEEEEESSCTTCEEEEECCC---
T ss_pred ecc---CCceEEEEc-----------------------------------------cEEEEeCCCcCcEEEEEECCCCCc
Confidence 111 222222221 134444 34445577777764320
Q ss_pred ------ee----eEE-EEec-CCCCceEEEEEECCCCEEEEEEcCCCc-EEEEEcCCCCc-EEEEeccccCCCCCCCCcc
Q psy5792 173 ------KV----TQV-LGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGT-ISRTHRDGTGR-ENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 173 ------~~----~~~-~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~-I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~ 238 (377)
+. ... +..+ .....+.++++.+.+..| .+-...+. |...++..... ..+.. + .....+.
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l-~s~s~d~~~v~iwd~~~~~~~~~~~~---g---~h~~~v~ 244 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV-ATCSQDGTIIRVFKTEDGVLVREFRR---G---LDRADVV 244 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECTTSSEE-EEEETTCSEEEEEETTTCCEEEEEEC---T---TCCSCEE
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECCCCCEE-EEEeCCCCEEEEEECCCCcEEEEEEc---C---CCCCcEE
Confidence 00 000 1112 233458899999855544 45446677 88888874332 23321 0 1234588
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
++++.+.+ ++..+-...++|.+.++..
T Consensus 245 ~~~~s~~~-~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 245 DMKWSTDG-SKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEEECTTS-CEEEEEETTCEEEEEESSC
T ss_pred EEEECCCC-CEEEEEECCCEEEEEEccC
Confidence 99999754 4445555567888888864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.16 E-value=22 Score=31.60 Aligned_cols=236 Identities=9% Similarity=0.069 Sum_probs=115.0
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc---EEEEEeCC-CCCceEEEEE-ECCeEEEEcCCCCceEEEcCCC----
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK---VAKVVSMP-DAAQVVAAVF-YKGRIIYSDANDGNIRSINLDG---- 88 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~---~~~i~~~~-~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g---- 88 (377)
+.+++.++. +..+-+..+.|...++... ....+... .......|++ .++.+..+-..++.|...+...
T Consensus 17 v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 17 IWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp EEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred eeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 445555543 4455556788888888653 22222112 3445678888 3445555555567777766321
Q ss_pred ----CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 89 ----SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 89 ----~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
+....+..... +.++++ +++ ..++++....+.|+
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~-sp~----------------------------------------g~~las~s~D~~v~ 132 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAW-SND----------------------------------------GYYLATCSRDKSVW 132 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEE-CTT----------------------------------------SCEEEEEETTSCEE
T ss_pred cccceeEEEEcCCCCcEEEEEE-CCC----------------------------------------CCEEEEEeCCCEEE
Confidence 11122221111 333332 222 12344443334588
Q ss_pred EEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEE--EeccccCCCCCCCCcceE
Q psy5792 164 GIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI--IEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i--~~~~~~~~~~~~~~p~~i 240 (377)
..++...... ...+..+. ....+..+++.+.+..|. +-...+.|...+......+.+ .. .....+..+
T Consensus 133 iwd~~~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s~D~~i~iW~~~~~~~~~~~~~~-------~h~~~v~~~ 203 (330)
T 2hes_X 133 IWETDESGEE-YECISVLQEHSQDVKHVIWHPSEALLA-SSSYDDTVRIWKDYDDDWECVAVLN-------GHEGTVWSS 203 (330)
T ss_dssp EEECCTTCCC-CEEEEEECCCSSCEEEEEECSSSSEEE-EEETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEE
T ss_pred EEeccCCCCC-eEEEEEeccCCCceEEEEECCCCCEEE-EEcCCCeEEEEECCCCCeeEEEEcc-------CCCCcEEEE
Confidence 8887432110 12222222 234578999988665554 444567777666543221222 22 233457788
Q ss_pred EEeccC-CeEEEEcCCCCEEEEEEcCCC--------eEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 241 AVDWIA-QNIYWSDPKENVIEVARLTGQ--------YRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 241 avD~~~-~~lYwtd~~~~~I~~~~~~g~--------~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
++.+.. +.+..+-...++|.+-++.+. .....+.. .......++..+ .+.|.-+.. ...|...+..
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~l~s~~~--dg~v~iw~~~ 279 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NGLIASVGA--DGVLAVYEEV 279 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-TSCEEEEET--TSCEEEEEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-CCEEEEEeC--CCEEEEEEcC
Confidence 888753 344555555566776666432 11111211 234467888875 455544432 3445444443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=83.32 E-value=22 Score=30.88 Aligned_cols=148 Identities=11% Similarity=-0.009 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCCcee----eEEEEec-CCCCceEEEEEECC--CCEEEEEEcCCCcEEEEEcCCCC-cEEE-----Eec
Q psy5792 159 GYDIMGIKYNKNESKV----TQVLGPL-SKVSLAAKVDFHAA--EDYIYWVDIDHGTISRTHRDGTG-RENI-----IEY 225 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~----~~~~~~~-~~~~~~~~l~~d~~--~~~ly~sd~~~~~I~~~~~~G~~-~~~i-----~~~ 225 (377)
.+.|+..++....... ...+..+ .....+.++++.+. +..|+.+. ..+.|...++.... ...+ ...
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG-NDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec-CCCcEEEecCCChHHhccccccccccc
Confidence 3458877776542100 0112222 23455889999986 55555554 56788888875322 1110 000
Q ss_pred cccCCCCCCCCcceEEEecc--CCeEEEEcCCCCEEEEEEcCCCeEEEE--eeCCCCCceeEEEcCCCC---eEEEEecC
Q psy5792 226 VETGDPTPVDQFTDIAVDWI--AQNIYWSDPKENVIEVARLTGQYRYVL--ISGGVDQPSALAVDPESG---YLFWSESG 298 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~--~~~lYwtd~~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g---~lywtd~g 298 (377)
...........+..+++.+. .+.++.+-...+.+............+ +........+++++|..+ .++.+-.
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~- 237 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC- 237 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-
Confidence 00000012334667777764 244444444445554444444332222 222344568999998652 4444432
Q ss_pred CCCeEEEEec
Q psy5792 299 KIPLIARAGL 308 (377)
Q Consensus 299 ~~~~I~r~~l 308 (377)
....|...++
T Consensus 238 ~dg~i~iwd~ 247 (351)
T 3f3f_A 238 KDGRIRIFKI 247 (351)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEeC
Confidence 2344444443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.12 E-value=32 Score=30.61 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=59.6
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP 231 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~ 231 (377)
++.+....+.|+..++..... ....+.......+..++|.+.+..|..+. .+.|...++........+.. ..
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~-~~--- 255 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPT-YT--- 255 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCC-CB---
T ss_pred EEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecc-cc---
Confidence 555544555699999876643 10122221246688999998777777766 33888888864322111110 00
Q ss_pred CCCCCc--ceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 232 TPVDQF--TDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 232 ~~~~~p--~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
...... ..+++++.+..|..+....+.|.+.+++.
T Consensus 256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 000111 35899976665655444356788777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 377 | ||||
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-29 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-10 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 3e-08 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 5e-27 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 5e-12 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 3e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 4e-08 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.001 |
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 112 bits (280), Expect = 2e-29
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 12/212 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNE-SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTI 209
+LF+ I + +N K + + F + +YW DI +I
Sbjct: 3 HLLFA--QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 210 SRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR 269
R G II + IA+D + + I+W+D + + IEVA++ G R
Sbjct: 61 GRASLHGGEPTTIIR-------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113
Query: 270 YVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDIT 328
VL G+ P + DP G L+W++ + P I + +DG + ILAQ+ + +T
Sbjct: 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT 173
Query: 329 LDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
D + ++ W + G++ E ++ + + ++
Sbjct: 174 FDAFSSQLCWVDA-GTHRAECLNPAQPGRRKV 204
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.7 bits (141), Expect = 2e-10
Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 36/241 (14%)
Query: 76 ANDGNIRSINLDGSN----------STVLRNNAGI-----SDFILFSVNSGYDIMGIKYN 120
A G I + L+ + + G+ + ++ S I +
Sbjct: 7 AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH 66
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180
E S +A +D + I ++ + I K + + +V G
Sbjct: 67 GGEPTTIIRQDLGSPEGIA--LDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121
Query: 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGT--ISRTHRDGTGRENIIEYVETGDPTPVDQFT 238
++ + +YW D + I +H DGT R + + +
Sbjct: 122 VNPRGIV----TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-------NLGLPN 170
Query: 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
+ D + + W D + E R ++ G+ P A+ L++++
Sbjct: 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWK 227
Query: 299 K 299
Sbjct: 228 T 228
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.2 bits (124), Expect = 3e-08
Identities = 35/258 (13%), Positives = 79/258 (30%), Gaps = 18/258 (6%)
Query: 39 SLHYVNIEVKVAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRN 96
L ++ AK A ++ F + ++D ++ +I +L G T +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR 75
Query: 97 NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGI----SDFI 152
S + + G I + +V ++ G +V + GI
Sbjct: 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN 135
Query: 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212
L+ + D I+ + + ++ + L + F A + WVD
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
Query: 213 HRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA-RLTGQYRYV 271
+ GR ++E + + +N+Y++D K N + +
Sbjct: 195 NPAQPGRRKVLE--------GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT 244
Query: 272 LISGGVDQPSALAVDPES 289
+ + +
Sbjct: 245 FHPHKQTRLYGITIALSQ 262
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (264), Expect = 5e-27
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 11/210 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
++ F+ + +++ + + S+ T ++ L V +D A + IYW D+ I
Sbjct: 3 YLFFT--NRHEVRKM--TLDRSEYTSLIPNLRNVV---ALDTEVASNRIYWSDLSQRMIC 55
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
T D + + V + D + +AVDWI NIYW+D + VA G R
Sbjct: 56 STQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 112
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
L +P A+ VDP G+++W++ G I + GL+G L E I ITLD
Sbjct: 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ R+YW S + + S+D +GG++ +
Sbjct: 173 LLSGRLYWVDS-KLHSISSIDVNGGNRKTI 201
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 5e-12
Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 22/262 (8%)
Query: 71 IIYSDANDGNIRSINLDGSNSTVLRNNAG---------ISDFILFSVNSGYDIMGIKYNK 121
+ +++ ++ +R + LD S T L N S+ I +S S I + ++
Sbjct: 4 LFFTNRHE--VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
+ + ++ +S + + K + T
Sbjct: 62 AHGVSSYDTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
SK ++YW D GT ++ + G +I V + I
Sbjct: 120 SKPRAIV---VDPVHGFMYWTD--WGTPAKIKKGGLNGVDIYSLVTEN----IQWPNGIT 170
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 301
+D ++ +YW D K + I + G R ++ ++ +FW++
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 302 LIARAGLDGKKQTILAQEIIMP 323
+ + L G +LA+ ++ P
Sbjct: 231 IFSANRLTGSDVNLLAENLLSP 252
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (147), Expect = 3e-11
Identities = 44/259 (16%), Positives = 97/259 (37%), Gaps = 18/259 (6%)
Query: 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDI 162
++ F+ + +++ + +++E + + +D S+ I +S S I
Sbjct: 3 YLFFT--NRHEVRKMTLDRSEYTS-----LIPNLRNVVALDTEV-ASNRIYWSDLSQRMI 54
Query: 163 MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI 222
+ ++ + + + IYW D GT+S G R+ +
Sbjct: 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114
Query: 223 IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPS 281
+ I VD + +YW+D I+ L G Y L++ + P+
Sbjct: 115 F-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167
Query: 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341
+ +D SG L+W +S I+ ++G + + ++ +L +V+W
Sbjct: 168 GITLDLLSGRLYWVDSKL-HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT-D 225
Query: 342 VGSNVLESMDYSGGSKMQL 360
+ + + S + GS + L
Sbjct: 226 IINEAIFSANRLTGSDVNL 244
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSNS-----TVLRNNAGISDFILFS--------VNSGY 112
RI +SD + I S LD ++ TV+ + D + +S
Sbjct: 39 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 98
Query: 113 DIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172
+ + K + SK VD G ++ + G K N
Sbjct: 99 GTVSVADTKGVKRKTLFRENGSKPRAIV-VDPVHGF----MYWTDWGTPAKIKKGGLNGV 153
Query: 173 KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPT 232
+ + + + +YWVD +IS +G R+ I+E D
Sbjct: 154 DIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEK 206
Query: 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV 285
+ +AV ++W+D I A L++ + P + +
Sbjct: 207 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.3 bits (87), Expect = 0.001
Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 3/222 (1%)
Query: 78 DGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS 137
GN+ + +G V++ G + + N Y G+ + +
Sbjct: 24 AGNVYVTS-EGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 82
Query: 138 LAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED 197
A + D + + D G Y + V + +
Sbjct: 83 AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP 142
Query: 198 YIYWVDIDHGTISRTHRDGTGRENI-IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256
VD + + + P A +Y ++
Sbjct: 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT 202
Query: 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N + VL G++ P A+AVD + ++ ++ G
Sbjct: 203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRG 243
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 377 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.87 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.84 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.8 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.75 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.74 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.72 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.53 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.45 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.41 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.74 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.61 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.61 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.46 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.45 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.36 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.36 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.35 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.27 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.26 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.23 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.19 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.13 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.07 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.74 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 97.71 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.69 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.59 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.58 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.56 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.52 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.51 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 97.43 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.41 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.41 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.41 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.4 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 97.33 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 97.27 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 97.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.19 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 97.14 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.92 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 96.82 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 96.7 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 96.58 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 96.11 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.99 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 95.9 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.78 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.74 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.65 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.48 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.41 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 95.35 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 94.11 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 93.31 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 92.49 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 90.99 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 90.09 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 86.07 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 85.67 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 85.45 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 83.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 80.67 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-36 Score=275.43 Aligned_cols=207 Identities=27% Similarity=0.514 Sum_probs=183.6
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC----CcEEEEec
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT----GRENIIEY 225 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~----~~~~i~~~ 225 (377)
+||++++++. |+++++++... ..+ +.++.++.++|||+.+++|||+|...+.|++++++|. ..+.++.
T Consensus 2 ~fLl~s~~~~--I~~~~l~~~~~---~~~--~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~- 73 (266)
T d1ijqa1 2 AYLFFTNRHE--VRKMTLDRSEY---TSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS- 73 (266)
T ss_dssp CEEEEECBSS--EEEEETTSCCC---EEE--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-
T ss_pred CEEEEECCCe--EEEEECCCCcc---eee--eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-
Confidence 5899999998 99999998766 233 3578899999999999999999999999999999874 3456666
Q ss_pred cccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 226 VETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
.++..|.+||+||.+++|||+|...++|++++++|..++.++...+.+|++|++||.+|+|||++++..++|+|
T Consensus 74 ------~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r 147 (266)
T d1ijqa1 74 ------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 147 (266)
T ss_dssp ------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred ------CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeE
Confidence 67888999999999999999999999999999999998888888889999999999999999999987789999
Q ss_pred EecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecC-CCCCccc
Q psy5792 306 AGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSS-NIKNALL 371 (377)
Q Consensus 306 ~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~-~~~~p~~ 371 (377)
+++||++++.++.+.+..|+||++|+.+++|||+|. ..++|++++++|++++++.... .+++|++
T Consensus 148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~-~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~ 213 (266)
T d1ijqa1 148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEKRLAHPFS 213 (266)
T ss_dssp EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred eccCCCceecccccccceeeEEEeeccccEEEEecC-CcCEEEEEECCCCCEEEEEeCCCcccccEE
Confidence 999999999999888899999999999999999999 9999999999999888876644 4678875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-35 Score=270.77 Aligned_cols=211 Identities=24% Similarity=0.446 Sum_probs=184.6
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceee-EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVT-QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
.||+++++.. |+++.+++...... ...........+.++|||+.+++|||+|...++|+++.++|+..++++.
T Consensus 2 ~fLl~s~~~~--I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~---- 75 (263)
T d1npea_ 2 THLLFAQTGK--IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---- 75 (263)
T ss_dssp EEEEEEEEEE--EEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----
T ss_pred CEEEEeCCCe--EEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE----
Confidence 4899999987 99999988754210 1111122345688999999999999999999999999999999999887
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEe
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAG 307 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ 307 (377)
.++..|.+|||||.+++|||+|...++|++++++|+.+++++..++..|++|++||.+|+|||++++. .++|+|++
T Consensus 76 ---~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~ 152 (263)
T d1npea_ 76 ---QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (263)
T ss_dssp ---TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred ---eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence 67889999999999999999999999999999999999888888889999999999999999999874 57899999
Q ss_pred cCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 308 LDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 308 ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
+||++++.++..++..|+|||+|+.+++|||+|. ..++|++++++|+++++++. .+++|++.
T Consensus 153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~-~~~~I~~~~~~g~~~~~v~~--~~~~P~~l 214 (263)
T d1npea_ 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA-GTHRAECLNPAQPGRRKVLE--GLQYPFAV 214 (263)
T ss_dssp TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-TTTEEEEEETTEEEEEEEEE--CCCSEEEE
T ss_pred CCCCCceeeeeecccccceEEEeecCcEEEEEeC-CCCEEEEEECCCCCeEEEEC--CCCCcEEE
Confidence 9999999999888999999999999999999999 99999999999988887764 35677653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.7e-33 Score=252.55 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=200.2
Q ss_pred eEEEEeCCCCcEEEEEcCCc-EEE-----EEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCc
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK-VAK-----VVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGI 100 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~-~~~-----i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p 100 (377)
+|+++ ..+.|++++++|. ... ... .....+.||++ .+++|||+|...+.|++++.+|...+++.
T Consensus 3 fLl~s--~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~----- 74 (263)
T d1npea_ 3 HLLFA--QTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII----- 74 (263)
T ss_dssp EEEEE--EEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-----
T ss_pred EEEEe--CCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-----
Confidence 56555 4568999999987 332 111 23445778888 68899999998888888876664433221
Q ss_pred eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe
Q psy5792 101 SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180 (377)
Q Consensus 101 ~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~ 180 (377)
T Consensus 75 -------------------------------------------------------------------------------- 74 (263)
T d1npea_ 75 -------------------------------------------------------------------------------- 74 (263)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CE
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NV 258 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~ 258 (377)
..++..|.++++|+.+++|||+|...++|.+++++|...+++.. .++..|.+|++|+.++.|||++.+. .+
T Consensus 75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~ 147 (263)
T d1npea_ 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-------TGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (263)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec-------ccccCCcEEEEecccCcEEEeecCCCCcE
Confidence 12234689999999999999999999999999999998888887 6788999999999999999998764 47
Q ss_pred EEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEE
Q psy5792 259 IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw 338 (377)
|++++++|+.+++++..++..|.+||+|+.+++|||+|.+ ..+|++++++|..+++++.. +..|.||+++ +++|||
T Consensus 148 I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~-~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~--~~~lYw 223 (263)
T d1npea_ 148 IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYY 223 (263)
T ss_dssp EEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEE
T ss_pred EEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC-CCEEEEEECCCCCeEEEECC-CCCcEEEEEE--CCEEEE
Confidence 9999999999888888789999999999999999999986 68999999999999888875 7899999996 699999
Q ss_pred EEeCCCCeEEEEEccCCceEEEEecCCCCCccc
Q psy5792 339 CYSVGSNVLESMDYSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 339 ~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~ 371 (377)
+|. ..++|.+++..++...+++...+...|++
T Consensus 224 td~-~~~~I~~~~~~~g~~~~~~~~~~~~~~~g 255 (263)
T d1npea_ 224 TDW-KTNSVIAMDLAISKEMDTFHPHKQTRLYG 255 (263)
T ss_dssp EET-TTTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred EEC-CCCEEEEEECCCCccceEECCCCCCCcce
Confidence 999 99999999998776666665555566664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-32 Score=247.77 Aligned_cols=245 Identities=20% Similarity=0.326 Sum_probs=198.9
Q ss_pred eEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEe
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFIL 105 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v 105 (377)
+|+++ ....|++++++|. ...++ +.+..|.+|++ .+++|||+|...+.|++++.+|......
T Consensus 3 fLl~s--~~~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~----------- 67 (266)
T d1ijqa1 3 YLFFT--NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----------- 67 (266)
T ss_dssp EEEEE--CBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------
T ss_pred EEEEE--CCCeEEEEECCCCcceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc-----------
Confidence 56555 4567999999999 88887 77889999998 5889999999999999887655321000
Q ss_pred eecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC
Q psy5792 106 FSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS 185 (377)
Q Consensus 106 ~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 185 (377)
. ......+..
T Consensus 68 --------------------------------------------------------~--------------~~~~~~~~~ 77 (266)
T d1ijqa1 68 --------------------------------------------------------Y--------------DTVISRDIQ 77 (266)
T ss_dssp --------------------------------------------------------C--------------EEEECSSCS
T ss_pred --------------------------------------------------------e--------------EEEEeCCCC
Confidence 0 011123445
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-CEEEEEEc
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-NVIEVARL 264 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-~~I~~~~~ 264 (377)
.|.++++|+.++.|||+|...++|.+++++|.....+.. ..+..|.+|++|+..+.|||++... .+|+++++
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-------~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~ 150 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-------CCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence 688999999999999999999999999999998878777 6788999999999999999999764 59999999
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC--CCCceEEEEeCCCCEEEEEEeC
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~--~~~P~glalD~~~~~LYw~d~~ 342 (377)
||+.+++++..++..|.+|++|+.+++|||+|.. ..+|++++++|++++.++... +..|.||+++ +++|||+|.
T Consensus 151 dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~- 226 (266)
T d1ijqa1 151 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI- 226 (266)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET-
T ss_pred CCCceecccccccceeeEEEeeccccEEEEecCC-cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEEC-
Confidence 9999999988788999999999999999999986 689999999999988887653 6789999997 589999999
Q ss_pred CCCeEEEEEccCCceEEEEecCCCCCcc
Q psy5792 343 GSNVLESMDYSGGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 343 ~~~~i~~~~~~G~~~~~~~~~~~~~~p~ 370 (377)
..++|++++..++...+++ .....+|.
T Consensus 227 ~~~~I~~~~~~~g~~~~~~-~~~~~~p~ 253 (266)
T d1ijqa1 227 INEAIFSANRLTGSDVNLL-AENLLSPE 253 (266)
T ss_dssp TTTEEEEEETTTCCCCEEE-ECSCSCCC
T ss_pred CCCeEEEEECCCCcceEEE-EcCCCCce
Confidence 9999999997655444443 23444454
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=2.8e-25 Score=200.81 Aligned_cols=251 Identities=14% Similarity=0.160 Sum_probs=197.0
Q ss_pred EeeccccCCCCcCCccccccCCCCeEEEEeCCC-CcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCce
Q psy5792 5 HVLPYTRNPSFGAVASTLKPQSGPFVYGVKTLS-HSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNI 81 (377)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~~~~~ly~~d~~~-~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I 81 (377)
+++|++..-....|.|+++|.. +.+|+++... ++|.+++.++. ...+ .......|.+|++ .++.|||+|..++.|
T Consensus 3 ~~~~~~~~~~~~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~gvav~~~g~i~v~d~~~~~i 80 (260)
T d1rwia_ 3 TVLPFTGIDFRLSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVL-PFNGLYQPQGLAVDGAGTVYVTDFNNRVV 80 (260)
T ss_dssp EECCCCSCCSCCCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEEC-CCCSCCSCCCEEECTTCCEEEEETTTEEE
T ss_pred eEEecccCCCcCCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEe-ccCCccCceEEEEcCCCCEEEeeeeecee
Confidence 4678888888889999999965 6899998754 78899888888 5554 2356778999999 678999999876554
Q ss_pred EEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 82 RSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 82 ~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
...+ ++...
T Consensus 81 ~~~~-~~~~~---------------------------------------------------------------------- 89 (260)
T d1rwia_ 81 TLAA-GSNNQ---------------------------------------------------------------------- 89 (260)
T ss_dssp EECT-TCSCC----------------------------------------------------------------------
T ss_pred eeee-eccce----------------------------------------------------------------------
Confidence 4322 11111
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEE
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ia 241 (377)
.+.+......|.++++|. ++.|||+|...+++.++..++........ .++..|.+|+
T Consensus 90 ---------------~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~i~ 146 (260)
T d1rwia_ 90 ---------------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF-------TGLNDPDGVA 146 (260)
T ss_dssp ---------------EECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCC-------CSCCSCCEEE
T ss_pred ---------------eeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeee-------cccCCcceee
Confidence 111223345688999998 66899999988999999998866555444 5678899999
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEII 321 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~ 321 (377)
+|+ .+++|+++...++|.+++.++....++....+..|.+|++|+ +|.|||+|++ +++|.+...++...+.+....+
T Consensus 147 ~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~-~~~i~~~~~~~~~~~~~~~~~~ 223 (260)
T d1rwia_ 147 VDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHN-TNQVVKLLAGSTTSTVLPFTGL 223 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETT-TTEEEEECTTCSCCEECCCCSC
T ss_pred ecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeee-eeeeeeeecC-CCEEEEEeCCCCeEEEEccCCC
Confidence 996 678999999999999999999988777666789999999997 6899999986 7899999999988777766668
Q ss_pred CCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 322 MPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
..|.||++|. ++.||++|. ..++|.+++..+..
T Consensus 224 ~~P~~i~~d~-~g~l~vad~-~~~rI~~i~~~~~~ 256 (260)
T d1rwia_ 224 NTPLAVAVDS-DRTVYVADR-GNDRVVKLTSLEHH 256 (260)
T ss_dssp CCEEEEEECT-TCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCeEEEEEeC-CCCEEEEEC-CCCEEEEEeCCCCc
Confidence 8999999995 578999999 99999999877543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.87 E-value=1.1e-19 Score=165.17 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=181.3
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEEEecCC-------CceeEEeeecCCCCcccCCCcCCCCCCcee
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTVLRNNA-------GISDFILFSVNSGYDIMGIKYNKNESKVQQ 128 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~-------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~ 128 (377)
.+..|.|||+ .++.||++|..+++|++++.+|+..+.+.... .|.++.+.....
T Consensus 21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------ 82 (279)
T d1q7fa_ 21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG------------------ 82 (279)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT------------------
T ss_pred eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccccccc------------------
Confidence 4778999999 67899999999999999999998776664211 144444322211
Q ss_pred ccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCc
Q psy5792 129 VLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGT 208 (377)
Q Consensus 129 ~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~ 208 (377)
..++......+.|..++.++... ..........|.++++|. ++.+|+++...++
T Consensus 83 ---------------------~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~ 136 (279)
T d1q7fa_ 83 ---------------------DIIVTERSPTHQIQIYNQYGQFV----RKFGATILQHPRGVTVDN-KGRIIVVECKVMR 136 (279)
T ss_dssp ---------------------EEEEEECGGGCEEEEECTTSCEE----EEECTTTCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred ---------------------ccceeccCCccccccccccccce----eecCCCcccccceecccc-CCcEEEEeeccce
Confidence 12333333333477766665522 233345667899999997 6789999998899
Q ss_pred EEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee-CCCCCceeEEEcC
Q psy5792 209 ISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GGVDQPSALAVDP 287 (377)
Q Consensus 209 I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp 287 (377)
+.+++.+|+....+.. ...+..|.++++|. .++||+++...++|.+++.+|+....+.. ..+..|.+|++|+
T Consensus 137 ~~~~~~~g~~~~~~g~------~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~ 209 (279)
T d1q7fa_ 137 VIIFDQNGNVLHKFGC------SKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS 209 (279)
T ss_dssp EEEECTTSCEEEEEEC------TTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECT
T ss_pred eeEeccCCceeecccc------cccccccceeeecc-ceeEEeeeccccceeeeecCCceeeeecccccccCCccccccc
Confidence 9999999876554433 14577899999994 78999999999999999999998766643 3477899999998
Q ss_pred CCCeEEEEecCCCCeEEEEecCCCCeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 288 ESGYLFWSESGKIPLIARAGLDGKKQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.|.||++|+..+.+|...+.+|+...++... ....|.+||+|. +++||+++. .++|....+.
T Consensus 210 -~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~~--n~~v~~fr~~ 272 (279)
T d1q7fa_ 210 -NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD-DGSVVLASK--DYRLYIYRYV 272 (279)
T ss_dssp -TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEEET--TTEEEEEECS
T ss_pred -CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeC-CCcEEEEeC--CCeEEEEEee
Confidence 6789999975567899999999877776554 356899999995 578999876 5788888776
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.84 E-value=1.6e-18 Score=157.55 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=176.2
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe----CCCCCceEEEEEE--CC-eEEEEcCCCCceEEEcC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS----MPDAAQVVAAVFY--KG-RIIYSDANDGNIRSINL 86 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~----~~~~~~p~~lav~--~~-~ly~td~~~~~I~~~~~ 86 (377)
|..|.|+++|.+ ++||++|...++|.+++++|+ .+.+-. ......|.++++. .+ .++..+..++.|.+.+.
T Consensus 22 f~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 22 FTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp BSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ECCccEEEEcCC-CCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 779999999975 679999999999999999999 776631 1234579999973 33 44445666778988888
Q ss_pred CCCceEEEecCC-C-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 87 DGSNSTVLRNNA-G-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 87 ~g~~~~~~~~~~-~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
+|.....+.... . |.++++.... .+++++...+++..
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G-----------------------------------------~i~v~~~~~~~~~~ 139 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKG-----------------------------------------RIIVVECKVMRVII 139 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTS-----------------------------------------CEEEEETTTTEEEE
T ss_pred cccceeecCCCcccccceeccccCC-----------------------------------------cEEEEeeccceeeE
Confidence 888877665433 3 8888874322 25666655555777
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
++.++... ........+..+.++++|. ++.+|++|...+.|++++.+|.....+.. ...+..|.+|++|.
T Consensus 140 ~~~~g~~~---~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~------~g~~~~P~giavD~ 209 (279)
T d1q7fa_ 140 FDQNGNVL---HKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQYLRQIGG------EGITNYPIGVGINS 209 (279)
T ss_dssp ECTTSCEE---EEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCEEEEESC------TTTSCSEEEEEECT
T ss_pred eccCCcee---ecccccccccccceeeecc-ceeEEeeeccccceeeeecCCceeeeecc------cccccCCccccccc
Confidence 66655422 2222334567899999997 67999999999999999999876555532 13466799999996
Q ss_pred cCCeEEEEcCC-CCEEEEEEcCCCeEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 245 IAQNIYWSDPK-ENVIEVARLTGQYRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 245 ~~~~lYwtd~~-~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.++||++|.. +.+|.+++.+|+...++... ....|.+||++| +|.||+++. +.+|.+...
T Consensus 210 -~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V~~~--n~~v~~fr~ 271 (279)
T d1q7fa_ 210 -NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMD-DGSVVLASK--DYRLYIYRY 271 (279)
T ss_dssp -TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET-TTEEEEEET--TTEEEEEEC
T ss_pred -CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeC-CCcEEEEeC--CCeEEEEEe
Confidence 6789999975 45899999999987776543 456899999998 689999985 467776654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=1.6e-18 Score=155.88 Aligned_cols=173 Identities=15% Similarity=0.195 Sum_probs=137.7
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...|.++++|. ++.|||+|...+.| ++..++........ ..+..|.+||+|+ .++|||+|..++++.+.+
T Consensus 56 ~~~p~gvav~~-~g~i~v~d~~~~~i-~~~~~~~~~~~~~~-------~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~ 125 (260)
T d1rwia_ 56 LYQPQGLAVDG-AGTVYVTDFNNRVV-TLAAGSNNQTVLPF-------DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLA 125 (260)
T ss_dssp CCSCCCEEECT-TCCEEEEETTTEEE-EECTTCSCCEECCC-------CSCCSEEEEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred ccCceEEEEcC-CCCEEEeeeeecee-eeeeeccceeeeee-------eeeeecccccccc-cceeEeeccccccccccc
Confidence 34578888887 67899999765554 45455555444433 5677899999996 679999999999999999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCC
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVG 343 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~ 343 (377)
.++.........++..|.+|++|+ +|.+|++++. ..+|.+.+.++.....+....+..|.||++|. +++|||+|. .
T Consensus 126 ~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~-~ 201 (260)
T d1rwia_ 126 AGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEH-N 201 (260)
T ss_dssp TTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEET-T
T ss_pred cccceeeeeeecccCCcceeeecC-CCCEeeeccc-cccccccccccceeeeeeccccCCCccceeee-eeeeeeeec-C
Confidence 999887666556789999999998 7889999985 68999999999988777666689999999995 578999999 9
Q ss_pred CCeEEEEEccCCceEEEEecCCCCCccc
Q psy5792 344 SNVLESMDYSGGSKMQLKLSSNIKNALL 371 (377)
Q Consensus 344 ~~~i~~~~~~G~~~~~~~~~~~~~~p~~ 371 (377)
.++|.+++.+|+.. ++.....+..|.+
T Consensus 202 ~~~i~~~~~~~~~~-~~~~~~~~~~P~~ 228 (260)
T d1rwia_ 202 TNQVVKLLAGSTTS-TVLPFTGLNTPLA 228 (260)
T ss_dssp TTEEEEECTTCSCC-EECCCCSCCCEEE
T ss_pred CCEEEEEeCCCCeE-EEEccCCCCCeEE
Confidence 99999999987644 4444445666654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.77 E-value=2.5e-16 Score=145.68 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=169.3
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCC----CceEEEcCCCCc
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDAND----GNIRSINLDGSN 90 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~----~~I~~~~~~g~~ 90 (377)
.+.|++.|.+ ++|||+|...++|.+++++|. ...+.. .....|.||++ .+++||+++... ..|..++.++..
T Consensus 41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3479999976 579999999999999999998 444432 55668999999 577999997543 223333322211
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
+..+..
T Consensus 119 -----------------------------------------------------------------------~~~~~~--- 124 (319)
T d2dg1a1 119 -----------------------------------------------------------------------LQDIIE--- 124 (319)
T ss_dssp -----------------------------------------------------------------------CEEEEC---
T ss_pred -----------------------------------------------------------------------eeeecc---
Confidence 111100
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC------CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH------GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~------~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
.......+..+++|. +++||++|... +.+++++.+|...+.+.. ++..|+||++++
T Consensus 125 ---------~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--------~~~~pnGia~s~ 186 (319)
T d2dg1a1 125 ---------DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------NISVANGIALST 186 (319)
T ss_dssp ---------SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--------EESSEEEEEECT
T ss_pred ---------CCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee--------ccceeeeeeecc
Confidence 011223466777887 56799998643 469999999877666654 677899999998
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCC--eEE-----EE-eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQ--YRY-----VL-ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~--~~~-----~l-~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
.++.||++|...++|.+++++.. ... .. .......|.||++|+ +|.||+++++ .++|.+.+.+|.....+
T Consensus 187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~-~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYG-QGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEET-TTEEEEECTTSCEEEEE
T ss_pred ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcC-CCEEEEECCCCcEEEEE
Confidence 88889999999999999988642 211 11 122356799999996 7999999996 79999999999766555
Q ss_pred Eec-----CCCCceEEEEeCCCCEEEEEEeC----CCCeEEEEEcc
Q psy5792 317 AQE-----IIMPIKDITLDRKNKRVYWCYSV----GSNVLESMDYS 353 (377)
Q Consensus 317 ~~~-----~~~~P~glalD~~~~~LYw~d~~----~~~~i~~~~~~ 353 (377)
.-- ....+..++......+||.+... ..+.|++++..
T Consensus 265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred eCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 321 13456788887777888887541 34566666654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.75 E-value=2.8e-16 Score=145.12 Aligned_cols=249 Identities=13% Similarity=0.139 Sum_probs=174.9
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCC-------CceEEEcCCCCceEEEec-----CCC-ceeEEeeecCCCCcc
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDAND-------GNIRSINLDGSNSTVLRN-----NAG-ISDFILFSVNSGYDI 114 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~-------~~I~~~~~~g~~~~~~~~-----~~~-p~~i~v~~~~~~~~~ 114 (377)
.+.+. ..+..|.|+++ .++.||+++... ++|.+++.++....++.. ... |.|+.+.....
T Consensus 10 ~~~v~--~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~---- 83 (314)
T d1pjxa_ 10 FTKVT--EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---- 83 (314)
T ss_dssp CEEEE--CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS----
T ss_pred eEEee--cCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC----
Confidence 34454 78889999999 678999987653 579999965544444321 112 77777632221
Q ss_pred cCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-C--CCCceEEEE
Q psy5792 115 MGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-S--KVSLAAKVD 191 (377)
Q Consensus 115 ~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~--~~~~~~~l~ 191 (377)
.+++++... .|.+++.++... ..+... . .+..|..++
T Consensus 84 ------------------------------------~l~vad~~~-~i~~~~~~g~~~---~~~~~~~~g~~~~~pndl~ 123 (314)
T d1pjxa_ 84 ------------------------------------QLFVADMRL-GLLVVQTDGTFE---EIAKKDSEGRRMQGCNDCA 123 (314)
T ss_dssp ------------------------------------EEEEEETTT-EEEEEETTSCEE---ECCSBCTTSCBCBCCCEEE
T ss_pred ------------------------------------EEEEEECCC-eEEEEeCCCcEE---EEEeccccccccCCCcEEE
Confidence 366666432 488898887633 111111 1 133477889
Q ss_pred EECCCCEEEEEEcC---------------CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCC----eEEEE
Q psy5792 192 FHAAEDYIYWVDID---------------HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQ----NIYWS 252 (377)
Q Consensus 192 ~d~~~~~ly~sd~~---------------~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~----~lYwt 252 (377)
+|. ++.||++|.. .++|++++.+|... .+.. .+..|.||++++..+ .||++
T Consensus 124 ~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~-~~~~--------~~~~pNGi~~~~d~d~~~~~lyv~ 193 (314)
T d1pjxa_ 124 FDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVDT--------AFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp ECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEEE--------EESSEEEEEEEECTTSCEEEEEEE
T ss_pred ECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCcee-EeeC--------CcceeeeeEECCCCCcceeEEEEE
Confidence 998 6899999853 34799999998543 3333 577899999987544 69999
Q ss_pred cCCCCEEEEEEcCCC----eEEEEeeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCce
Q psy5792 253 DPKENVIEVARLTGQ----YRYVLISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 253 d~~~~~I~~~~~~g~----~~~~l~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
|...++|.++++++. .++++... ....|.||++|+ +|.||+++++ ..+|.+.+.+|......+......|.
T Consensus 194 d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~-~g~I~~~dp~~g~~~~~i~~p~~~~t 271 (314)
T d1pjxa_ 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPS 271 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEET-TTEEEEECTTCBSCSEEEECSSSCEE
T ss_pred eecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcC-CCEEEEEeCCCCEEEEEEECCCCCEE
Confidence 999999999887543 12333331 244699999996 7999999996 68999999987654443443357899
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
++++....+.||+++. ..++|++++..-..
T Consensus 272 ~~afg~d~~~lyVt~~-~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEH-ENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEECTTSSEEEEEET-TTTEEEEEECSSCB
T ss_pred EEEEeCCCCEEEEEEC-CCCcEEEEECCCCC
Confidence 9999887778999999 99999999987443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.74 E-value=7.7e-16 Score=142.07 Aligned_cols=244 Identities=10% Similarity=0.068 Sum_probs=168.5
Q ss_pred CcCCccccccCCCCeEEEEeCC-------CCcEEEEEcCCc-EEEEEeC---CCCCceEEEEEE--CCeEEEEcCCCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTL-------SHSLHYVNIEVK-VAKVVSM---PDAAQVVAAVFY--KGRIIYSDANDGNI 81 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~-------~~~I~~~~~dG~-~~~i~~~---~~~~~p~~lav~--~~~ly~td~~~~~I 81 (377)
+..|.|.++|+. ++||+++.. .++|.++++++. .+.+... .....|.||++. ++.||++|.. +.|
T Consensus 17 ~~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~~i 94 (314)
T d1pjxa_ 17 IPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGL 94 (314)
T ss_dssp CTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEE
T ss_pred CCCCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-CeE
Confidence 568899999975 689999775 367999999988 6655411 123469999994 4579999875 569
Q ss_pred EEEcCCCCceEEEecCC------CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 82 RSINLDGSNSTVLRNNA------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 82 ~~~~~~g~~~~~~~~~~------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
.+++.+|....++.... .|.++++.... .++++
T Consensus 95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-----------------------------------------~lyvt 133 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-----------------------------------------NLWIT 133 (314)
T ss_dssp EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-----------------------------------------CEEEE
T ss_pred EEEeCCCcEEEEEeccccccccCCCcEEEECCCC-----------------------------------------CEEEe
Confidence 99998887655543221 14455542221 13333
Q ss_pred eC---------------CCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCC----EEEEEEcCCCcEEEEEcCC
Q psy5792 156 VN---------------SGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED----YIYWVDIDHGTISRTHRDG 216 (377)
Q Consensus 156 ~~---------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~----~ly~sd~~~~~I~~~~~~G 216 (377)
+. ..|.|.+++.++... . ....+..|-|+++++..+ .||++|...++|+++++++
T Consensus 134 d~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~----~--~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~ 207 (314)
T d1pjxa_ 134 APAGEVAPADYTRSMQEKFGSIYCFTTDGQMI----Q--VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp ECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE----E--EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred cCccCcccccccceeccCCceEEEEeecCcee----E--eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccC
Confidence 21 123477776665422 1 123455688898876554 7999999999999988754
Q ss_pred CC----cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeE
Q psy5792 217 TG----RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 217 ~~----~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 292 (377)
.. ++.+... .......|.||++| ..++||+++...++|.++++++......+......|.++|+.|....|
T Consensus 208 ~g~~~~~~~~~~~----~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 208 PAKIENKKVWGHI----PGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp TTEEEEEEEEEEC----CCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred ccccceeeEEEEc----cccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence 32 2222220 00223459999999 578999999999999999999776544455456789999999977789
Q ss_pred EEEecCCCCeEEEEecCCCCe
Q psy5792 293 FWSESGKIPLIARAGLDGKKQ 313 (377)
Q Consensus 293 ywtd~g~~~~I~r~~ldG~~~ 313 (377)
|+|+.. +.+|+|+++.-.++
T Consensus 283 yVt~~~-~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 283 FVTEHE-NNAVWKFEWQRNGK 302 (314)
T ss_dssp EEEETT-TTEEEEEECSSCBC
T ss_pred EEEECC-CCcEEEEECCCCCh
Confidence 999975 78999999876654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.72 E-value=1.7e-13 Score=122.49 Aligned_cols=269 Identities=14% Similarity=0.144 Sum_probs=196.6
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCcee
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISD 102 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~ 102 (377)
.++|+++...+.|..+|++.. .+++ .....|.+|++ .+.+||+++..++.|..++ .+++....+.....|.+
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i---~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~ 78 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG 78 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEE---ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccc
Confidence 478999999999999998766 4444 44568999999 4567999999999999999 67777666665445777
Q ss_pred EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC
Q psy5792 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182 (377)
Q Consensus 103 i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~ 182 (377)
+.+.... ..++++....+.+...+..... ....+.
T Consensus 79 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 113 (301)
T d1l0qa2 79 VAVSPDG----------------------------------------KQVYVTNMASSTLSVIDTTSNT-----VAGTVK 113 (301)
T ss_dssp EEECTTS----------------------------------------SEEEEEETTTTEEEEEETTTTE-----EEEEEE
T ss_pred ccccccc----------------------------------------ccccccccccceeeecccccce-----eeeecc
Confidence 7653222 1355555444446666665542 223334
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
....+..+.+.+.+..++.+......+...+........... ....|..+++.+..+.+|++......+.+.
T Consensus 114 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (301)
T d1l0qa2 114 TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------VGRSPKGIAVTPDGTKVYVANFDSMSISVI 185 (301)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------CCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--------cCCCceEEEeeccccceeeecccccccccc
Confidence 456688899998899999988777777777776433333332 445699999998889999999888888888
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
............. ...|.++++++....+|++..+. ...|...++........+.. -..|.++++++.+++||++..
T Consensus 186 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~ 263 (301)
T d1l0qa2 186 DTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALS 263 (301)
T ss_dssp ETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred cccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEEC
Confidence 8887765554443 46799999999999999987643 46788888764433322332 367999999988899999999
Q ss_pred CCCCeEEEEEccCC
Q psy5792 342 VGSNVLESMDYSGG 355 (377)
Q Consensus 342 ~~~~~i~~~~~~G~ 355 (377)
..++|...+...+
T Consensus 264 -~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 264 -FCNTVSVIDTATN 276 (301)
T ss_dssp -TTTEEEEEETTTT
T ss_pred -CCCeEEEEECCCC
Confidence 9999999998744
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.70 E-value=7.6e-15 Score=134.26 Aligned_cols=240 Identities=10% Similarity=0.079 Sum_probs=170.0
Q ss_pred ccCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCcEEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCC
Q psy5792 10 TRNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVKVAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDG 88 (377)
Q Consensus 10 ~~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g 88 (377)
+.+|...+|.++|++++ ++||+++...++|++++.+|..+.+. .....|.+|++ .++.||++++..+.+.+++..+
T Consensus 22 ~~~p~~~~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~~~~~--~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 22 TSFPVNTFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQIHA--TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp EEECTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEEEEE--ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCCcCCEEECCC-CCEEEEeCCCCEEEEEeCCCCEEEEE--cCCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence 44566668999999986 58999999999999999999933343 45578999999 5778999998877777665211
Q ss_pred CceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 89 SNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 89 ~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
... .+..
T Consensus 99 ~~~---------------------------------------------------------------------~~~~---- 105 (302)
T d2p4oa1 99 SDG---------------------------------------------------------------------TVET---- 105 (302)
T ss_dssp TTS---------------------------------------------------------------------CEEE----
T ss_pred ccc---------------------------------------------------------------------ceee----
Confidence 100 0111
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC---CCCCCCCcceEEEecc
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG---DPTPVDQFTDIAVDWI 245 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~---~~~~~~~p~~iavD~~ 245 (377)
+........+.+++++. ++++|+++...+.|++++.++............. .......+.+|+.|
T Consensus 106 ---------~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-- 173 (302)
T d2p4oa1 106 ---------LLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-- 173 (302)
T ss_dssp ---------EEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--
T ss_pred ---------ccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--
Confidence 11112233466777776 6799999998999999998875544433311111 11234458889888
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeE----EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEE-ecC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYR----YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA-QEI 320 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~-~~~ 320 (377)
.+.+|+++...++|.+++.++... .... ....|.+|++|+ .|.||+++.. ..+|.|.+.+|....... ...
T Consensus 174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~-dG~l~va~~~-~~~V~~i~p~G~~~~~~~~~~~ 249 (302)
T d2p4oa1 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDV-EGNLYGATHI-YNSVVRIAPDRSTTIIAQAEQG 249 (302)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBT-TCCEEEECBT-TCCEEEECTTCCEEEEECGGGT
T ss_pred CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECC-CCCEEEEEcC-CCcEEEECCCCCEEEEEecCCC
Confidence 689999999999999999887431 2222 356799999997 6889999975 689999999886444332 224
Q ss_pred CCCceEEEEeC---CCCEEEEEEe
Q psy5792 321 IMPIKDITLDR---KNKRVYWCYS 341 (377)
Q Consensus 321 ~~~P~glalD~---~~~~LYw~d~ 341 (377)
+..|++++++. ..+.||++..
T Consensus 250 ~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 250 VIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCceEEEEcCCCCCCCEEEEECC
Confidence 77899999953 4578999876
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.65 E-value=2.6e-14 Score=131.92 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=147.7
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC----CCcEEEEEcCCCCcEEEEec
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID----HGTISRTHRDGTGRENIIEY 225 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~----~~~I~~~~~~G~~~~~i~~~ 225 (377)
..|++++...++|.+++.++... .. ........|.+++++. +++||+++.. .+.|.+.+.++.....+...
T Consensus 51 G~Ly~~D~~~g~I~ri~p~g~~~--~~--~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (319)
T d2dg1a1 51 GQLFLLDVFEGNIFKINPETKEI--KR--PFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED 125 (319)
T ss_dssp SCEEEEETTTCEEEEECTTTCCE--EE--EEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred CCEEEEECCCCEEEEEECCCCeE--EE--EEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccC
Confidence 35889998778899998887644 22 2234556799999998 6789999753 34678888777666555530
Q ss_pred cccCCCCCCCCcceEEEeccCCeEEEEcCC------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 226 VETGDPTPVDQFTDIAVDWIAQNIYWSDPK------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~~~~lYwtd~~------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
......|.++++|. .|+||++|.. .+.+.+.+++|+..+.+.. .+..|+||+++|.++.||++|..
T Consensus 126 -----~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 126 -----LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp -----SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGG-
T ss_pred -----CCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEeccc-
Confidence 02345699999996 6789999865 3469999999987766665 48889999999988899999985
Q ss_pred CCeEEEEecCCCC--eEEE----E--ecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 300 IPLIARAGLDGKK--QTIL----A--QEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 300 ~~~I~r~~ldG~~--~~~l----~--~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
..+|++.+++... .... . ......|.||++| .+++||+++. ..++|.+++.+|.-..++.
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~-~~g~V~~~~p~G~~l~~i~ 265 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMY-GQGRVLVFNKRGYPIGQIL 265 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEE-TTTEEEEECTTSCEEEEEE
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEc-CCCEEEEECCCCcEEEEEe
Confidence 6899999886532 1111 1 1124569999999 4688999999 9999999999986555554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.53 E-value=3.6e-11 Score=106.98 Aligned_cols=238 Identities=12% Similarity=0.119 Sum_probs=167.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
...|.++++++++++||++....+.|...|+... ..++ .....|.++++ .+..++++......+...+ .+++
T Consensus 31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee---eccccccccccccccccccccccccceeeecccccce
Confidence 3579999999999999999999999999999766 5554 44567999999 4557888888888888887 5565
Q ss_pred ceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 90 NSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 90 ~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
....+.....+..+.+ .++. ..++++......+...+...
T Consensus 108 ~~~~~~~~~~~~~~~~-~~dg---------------------------------------~~~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 108 VAGTVKTGKSPLGLAL-SPDG---------------------------------------KKLYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp EEEEEECSSSEEEEEE-CTTS---------------------------------------SEEEEEETTTTEEEEEETTT
T ss_pred eeeeccccccceEEEe-ecCC---------------------------------------Ceeeeeeccccceeeeeccc
Confidence 5555543333444443 2221 23555554443455555544
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
.. .+..+.....+..+++.+..+.+|++....+.+............... .-..|.++++++.+..+
T Consensus 148 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~ 214 (301)
T d1l0qa2 148 KA-----VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------VEAAPSGIAVNPEGTKA 214 (301)
T ss_dssp TE-----EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------CSSEEEEEEECTTSSEE
T ss_pred cc-----eeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc--------ccCCcceeecccccccc
Confidence 42 222334455688899999899999998877777767666543333332 33469999999988889
Q ss_pred EEEc--CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 250 YWSD--PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 250 Ywtd--~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
|++. ...++|.+.++........+.. ...|++++++|.+.+||++..+ ..+|...++..
T Consensus 215 ~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~-~~~i~v~D~~t 275 (301)
T d1l0qa2 215 YVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSF-CNTVSVIDTAT 275 (301)
T ss_dssp EEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETT-TTEEEEEETTT
T ss_pred ccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECC-CCeEEEEECCC
Confidence 8875 4457899999876554333333 4679999999988899999875 57898888753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.53 E-value=3.5e-12 Score=116.07 Aligned_cols=220 Identities=14% Similarity=0.101 Sum_probs=155.0
Q ss_pred EEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCcccc
Q psy5792 62 VAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLA 139 (377)
Q Consensus 62 ~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~ 139 (377)
.|-.+ .++.|||+|...++|++++.++...+++.-...|.++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~d------------------------------- 69 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISD------------------------------- 69 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEET-------------------------------
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecC-------------------------------
Confidence 44455 478999999999999999966555555543333555554222
Q ss_pred CCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC---CCCceEEEEEECCCCEEEEEEcC------CCcEE
Q psy5792 140 AKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS---KVSLAAKVDFHAAEDYIYWVDID------HGTIS 210 (377)
Q Consensus 140 ~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~---~~~~~~~l~~d~~~~~ly~sd~~------~~~I~ 210 (377)
..++++..++ |.+++.+.... ..+.... ...++..+.+|+ ++++|+++.. .+.++
T Consensus 70 ----------g~l~va~~~g--l~~~d~~tg~~---~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~ 133 (295)
T d2ghsa1 70 ----------SKQLIASDDG--LFLRDTATGVL---TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIY 133 (295)
T ss_dssp ----------TEEEEEETTE--EEEEETTTCCE---EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEE
T ss_pred ----------CCEEEEEeCc--cEEeeccccee---eEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEe
Confidence 2366777766 88888876654 2333222 223578888998 6788988742 23566
Q ss_pred EEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe------EEEEee--CCCCCcee
Q psy5792 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY------RYVLIS--GGVDQPSA 282 (377)
Q Consensus 211 ~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~------~~~l~~--~~~~~P~~ 282 (377)
+.. +| ....+.. ++..|.++++++..+.+||+|...++|.+++++... +...+. .....|.|
T Consensus 134 ~~~-~g-~~~~~~~--------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG 203 (295)
T d2ghsa1 134 HVA-KG-KVTKLFA--------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 203 (295)
T ss_dssp EEE-TT-EEEEEEE--------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred eec-CC-cEEEEee--------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence 664 33 3333333 577899999998888999999999999999987532 233333 23456999
Q ss_pred EEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC-CCCEEEEEEe
Q psy5792 283 LAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR-KNKRVYWCYS 341 (377)
Q Consensus 283 iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~-~~~~LYw~d~ 341 (377)
+++|. +|.||++.++ ..+|.+.+.+|.....+-.- ..+|+.+++.- ..+.||++..
T Consensus 204 ~~vD~-~GnlWva~~~-~g~V~~~dp~G~~~~~i~lP-~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 204 SVCDA-EGHIWNARWG-EGAVDRYDTDGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp EEECT-TSCEEEEEET-TTEEEEECTTCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred eEEcC-CCCEEeeeeC-CCceEEecCCCcEeeEecCC-CCceEEEEEeCCCCCEEEEEEC
Confidence 99996 8999999996 68999999999876655432 46899999963 4589999976
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.48 E-value=6.1e-12 Score=114.50 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=116.8
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
.+.+++++. ++.||+++...+.+.++.+++.. ...+... .....|.++++|. .+++|+++...++|++.+
T Consensus 69 ~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~ 140 (302)
T d2p4oa1 69 KVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTL------PDAIFLNGITPLS-DTQYLTADSYRGAIWLID 140 (302)
T ss_dssp EEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC------TTCSCEEEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred CcceEEEcC-CCCeEEEecCCceEEEEEecccccceeecccc------CCccccceeEEcc-CCCEEeeccccccceeee
Confidence 466777887 56799998888888887776432 2233321 3455699999995 689999999999999999
Q ss_pred cCCCeEEEEeeC----------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe----EEEEecCCCCceEEEE
Q psy5792 264 LTGQYRYVLISG----------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ----TILAQEIIMPIKDITL 329 (377)
Q Consensus 264 ~~g~~~~~l~~~----------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~----~~l~~~~~~~P~glal 329 (377)
+++......... ....|.+|+.| .+.+|+++.. ..+|++++.++... ..... ...|.||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~ 215 (302)
T d2p4oa1 141 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE-KMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAF 215 (302)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT-TTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEE
T ss_pred ccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCC-CCeEEeccccccccccccccccC--CCCCcceEE
Confidence 998765544332 24567888886 5799999985 79999999886532 22222 578999999
Q ss_pred eCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 330 DRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
|. +++||+++. ..++|.+++.+|.
T Consensus 216 d~-dG~l~va~~-~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 216 DV-EGNLYGATH-IYNSVVRIAPDRS 239 (302)
T ss_dssp BT-TCCEEEECB-TTCCEEEECTTCC
T ss_pred CC-CCCEEEEEc-CCCcEEEECCCCC
Confidence 95 578999999 8999999999965
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.45 E-value=1.1e-10 Score=105.89 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=153.3
Q ss_pred cccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEec
Q psy5792 20 STLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRN 96 (377)
Q Consensus 20 ~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~ 96 (377)
|-.-|...++|||+|...++|.+.++++. .+.+. .-..|.+++. .++.++++.. +.|.+++ .+|+. +.+..
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va~~--~gl~~~d~~tg~~-~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIASD--DGLFLRDTATGVL-TLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEEET--TEEEEEETTTCCE-EEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEEEe--CccEEeeccccee-eEEee
Confidence 44568888999999999999999999999 66552 2346788888 7788998864 5799999 44544 33322
Q ss_pred CC----C--ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC------CCCeEEE
Q psy5792 97 NA----G--ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN------SGYDIMG 164 (377)
Q Consensus 97 ~~----~--p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~------~~~~I~~ 164 (377)
.. . +.++++... ..++++.. ..+.+.+
T Consensus 96 ~~~~~~~~~~nd~~vd~~-----------------------------------------G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPS-----------------------------------------GALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp SSTTCTTEEEEEEEECTT-----------------------------------------SCEEEEEEETTCCTTCEEEEE
T ss_pred eecCCCcccceeeEECCC-----------------------------------------CCEEEEeccccccccceeEee
Confidence 11 0 334433111 12333321 1122444
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC------cEEEEeccccCCCCCCCCcc
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG------RENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~------~~~i~~~~~~~~~~~~~~p~ 238 (377)
+. .... . .....+..+-+++++..++.+||+|...++|++++++... +..... .....+.|.
T Consensus 135 ~~--~g~~--~---~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~-----~~~~~g~pd 202 (295)
T d2ghsa1 135 VA--KGKV--T---KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-----STGIKGGMD 202 (295)
T ss_dssp EE--TTEE--E---EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE-----CTTSSSEEE
T ss_pred ec--CCcE--E---EEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec-----cCccccccc
Confidence 32 1111 1 1123455688999999999999999999999999987432 233332 002334699
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc-CCCCeEEEEecCC------------CCeEEE
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD-PESGYLFWSESGK------------IPLIAR 305 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd-p~~g~lywtd~g~------------~~~I~r 305 (377)
|+++| ..|+||++....++|.+++++|+....+ .....+|..+|+- +....||+|.... .+.|++
T Consensus 203 G~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~i-~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~ 280 (295)
T d2ghsa1 203 GSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFE 280 (295)
T ss_dssp EEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEE
T ss_pred ceEEc-CCCCEEeeeeCCCceEEecCCCcEeeEe-cCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEE
Confidence 99999 5789999998889999999999877555 3345689999996 4568999996421 246777
Q ss_pred EecC
Q psy5792 306 AGLD 309 (377)
Q Consensus 306 ~~ld 309 (377)
+.++
T Consensus 281 ~~~~ 284 (295)
T d2ghsa1 281 LGIE 284 (295)
T ss_dssp CSSC
T ss_pred EcCC
Confidence 7655
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2e-10 Score=103.61 Aligned_cols=281 Identities=10% Similarity=0.072 Sum_probs=180.2
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-C-CCCceEEEe---cCC
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-L-DGSNSTVLR---NNA 98 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~-~g~~~~~~~---~~~ 98 (377)
+.+|++.+..+.|+..+++.. .+.+-.......|.+|++ .+.+||++....+.|..++ . .+...+... ...
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence 468999999999999998654 332211144567899999 6668999999888888776 2 222222221 122
Q ss_pred CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 99 GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 99 ~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
.|.++.+ +++. .+|+++....+.+..+..+.... ....
T Consensus 84 ~p~~l~~-spDg---------------------------------------~~l~v~~~~~~~v~~~~~~~~~~--~~~~ 121 (333)
T d1ri6a_ 84 SLTHIST-DHQG---------------------------------------QFVFVGSYNAGNVSVTRLEDGLP--VGVV 121 (333)
T ss_dssp CCSEEEE-CTTS---------------------------------------SEEEEEETTTTEEEEEEEETTEE--EEEE
T ss_pred CceEEEE-cCCC---------------------------------------CEEeecccCCCceeeeccccccc--eecc
Confidence 2666665 3322 25777776555677766655433 2222
Q ss_pred EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 179 ~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
........+.++.+++.+..+|+.+.....|...+................ ......|..++++.....+|++....+.
T Consensus 122 ~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~g~~p~~i~~~~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELNSS 200 (333)
T ss_dssp EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee-eecCCCccEEEEeccceeEEeeccccCc
Confidence 223445568888999999999999988888888777643322211100000 0233468999999988899999888888
Q ss_pred EEEEEcCCCe--E---EEEee-----CCCCCceeEEEcCCCCeEEEEecCCCCe--EEEEecCCCCeEEEEe-cCCCCce
Q psy5792 259 IEVARLTGQY--R---YVLIS-----GGVDQPSALAVDPESGYLFWSESGKIPL--IARAGLDGKKQTILAQ-EIIMPIK 325 (377)
Q Consensus 259 I~~~~~~g~~--~---~~l~~-----~~~~~P~~iavdp~~g~lywtd~g~~~~--I~r~~ldG~~~~~l~~-~~~~~P~ 325 (377)
..+...+... . ..+.. .....|.++++++...++|.+... ... ++..+.++...+.... ..-..|.
T Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 279 (333)
T d1ri6a_ 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-ASLITVFSVSEDGSVLSKEGFQPTETQPR 279 (333)
T ss_dssp EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTSCCEEEEEEEECSSSCC
T ss_pred eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc-CCeEEEEEEcCCCCEEEEEEEeCCCCCee
Confidence 7777765432 1 11211 124568899999988889988865 344 4444444444333322 1246799
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
++++++.+++||++.. ..+.|...++|
T Consensus 280 ~~a~spDGk~l~va~~-~~~~v~v~~id 306 (333)
T d1ri6a_ 280 GFNVDHSGKYLIAAGQ-KSHHISVYEIV 306 (333)
T ss_dssp CEEECTTSSEEEEECT-TTCEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEC-CCCeEEEEEEE
Confidence 9999999999999988 77776655444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.41 E-value=1.8e-10 Score=107.66 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=120.4
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
...+++++.+++.+++||++|...++|++++.+............. ...-..|+++++++..+.+|+++...++|.+.
T Consensus 143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~--~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~ 220 (365)
T d1jofa_ 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA--PDPGDHPRWVAMHPTGNYLYALMEAGNRICEY 220 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC--SSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee--cCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence 3456899999999999999999999999887764432222210000 02234699999999889999999999999999
Q ss_pred EcCCCeEE---EEee-----C-----------CCCCceeEEEcCCCCeEEEEecCC----CCeEEEEecC--CCCeE--E
Q psy5792 263 RLTGQYRY---VLIS-----G-----------GVDQPSALAVDPESGYLFWSESGK----IPLIARAGLD--GKKQT--I 315 (377)
Q Consensus 263 ~~~g~~~~---~l~~-----~-----------~~~~P~~iavdp~~g~lywtd~g~----~~~I~r~~ld--G~~~~--~ 315 (377)
+++..... ..-. . ....|..|+++|...+||++..+. ...|....++ |.-.+ .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~ 300 (365)
T d1jofa_ 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence 99765321 1110 0 122467899999999999998753 1235444444 43222 2
Q ss_pred EEec--CCCCceEEEEeC-CCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 316 LAQE--IIMPIKDITLDR-KNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 316 l~~~--~~~~P~glalD~-~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
+... .-.+|.++++++ .+++||+++. ..+.|...++++.....+
T Consensus 301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~-~s~~v~v~~~~~~~l~~~ 347 (365)
T d1jofa_ 301 LSPTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKDEFLHRV 347 (365)
T ss_dssp EEECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEETTEEEEE
T ss_pred eeEEEcCCCCccEEEecCCCCCEEEEEeC-CCCeEEEEEEeCCcCcEE
Confidence 2221 135899999986 5688999999 999999998886544443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=4.9e-09 Score=94.25 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=168.1
Q ss_pred CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc---EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCC-
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK---VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLD- 87 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~---~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~- 87 (377)
+.+.|.++++++++++||.+....+.|...+++.. .+.+........|.+|++ .+.+||+++.....|...+.+
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED 114 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence 34689999999999999999998898988776543 333322245567999999 566899999888888777633
Q ss_pred CCceEEE--ecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 88 GSNSTVL--RNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 88 g~~~~~~--~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
....... ..... |.++.+ +++. ..++.+......|..
T Consensus 115 ~~~~~~~~~~~~~~~~~~v~~-s~d~---------------------------------------~~~~~~~~~~~~i~~ 154 (333)
T d1ri6a_ 115 GLPVGVVDVVEGLDGCHSANI-SPDN---------------------------------------RTLWVPALKQDRICL 154 (333)
T ss_dssp TEEEEEEEEECCCTTBCCCEE-CTTS---------------------------------------SEEEEEEGGGTEEEE
T ss_pred ccceecccccCCCccceEEEe-eecc---------------------------------------eeeeccccccceeeE
Confidence 3222221 11112 444443 2221 235555544434666
Q ss_pred EEcCCCCcee--eEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEe-ccccCCCCCCCCcce
Q psy5792 165 IKYNKNESKV--TQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIE-YVETGDPTPVDQFTD 239 (377)
Q Consensus 165 ~~l~~~~~~~--~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~-~~~~~~~~~~~~p~~ 239 (377)
++........ ............|..++++.....+|++....+.......+... ...... ............|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (333)
T d1ri6a_ 155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 234 (333)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence 6655443211 11122334456789999999999999999887776666654322 111111 000111123445888
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEE-eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-C-eE
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVL-ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-K-QT 314 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l-~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~-~~ 314 (377)
+++.+.++.+|.+....+.+.+..++ +...... .......|++++++|.+.+||++... ...|....+|.. + .+
T Consensus 235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-SHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-TCEEEEEEEETTTTEEE
T ss_pred EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-CCeEEEEEEECCCCcEE
Confidence 99998888899998888877766655 3333222 12235679999999998899999753 455555444432 2 12
Q ss_pred EE--EecCCCCceEEEEeC
Q psy5792 315 IL--AQEIIMPIKDITLDR 331 (377)
Q Consensus 315 ~l--~~~~~~~P~glalD~ 331 (377)
.+ +.. -..|..+++..
T Consensus 314 ~~~~~~~-g~~p~~v~~~~ 331 (333)
T d1ri6a_ 314 EKGRYAV-GQGPMWVVVNA 331 (333)
T ss_dssp EEEEEEC-SSSCCEEEEEE
T ss_pred EEEeccC-CCCCcEEEEEc
Confidence 22 222 24698998863
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=2.4e-08 Score=92.76 Aligned_cols=283 Identities=10% Similarity=-0.008 Sum_probs=163.1
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEc--CCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSIN--LDG 88 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~--~~g 88 (377)
..|+.++++++++.||.+....-..+.++.+|+ ..... ......|..+++ .+..+|++..+ .+.+..+. .++
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~ 118 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence 356889999999999999876655666777777 44332 234456777777 55566776543 45565554 334
Q ss_pred CceEEEec--CCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 89 SNSTVLRN--NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 89 ~~~~~~~~--~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
....++.- .....+.. -...+| .+.=-|-+..+|.+ .++++++....+|..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~-~~~~~q-----------~~~h~h~v~~sPdG-------------~~l~v~d~g~d~v~~~~ 173 (365)
T d1jofa_ 119 GYGNVFSVSETGKLEKNV-QNYEYQ-----------ENTGIHGMVFDPTE-------------TYLYSADLTANKLWTHR 173 (365)
T ss_dssp CEEEEEEECTTCCEEEEE-EEEECC-----------TTCCEEEEEECTTS-------------SEEEEEETTTTEEEEEE
T ss_pred CcceeEeeeecceecCcc-cCcccC-----------CCCcceEEEECCCC-------------CEEEEeeCCCCEEEEEE
Confidence 33333221 11111111 111222 00001222222222 36888886655688887
Q ss_pred cCCCCcee-eEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc-CC-----------CCC
Q psy5792 167 YNKNESKV-TQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET-GD-----------PTP 233 (377)
Q Consensus 167 l~~~~~~~-~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~-~~-----------~~~ 233 (377)
.+....-. ............|..+++++.+..+|+++...++|..++.+......+...... .. ...
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (365)
T d1jofa_ 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccc
Confidence 65443200 111222233567999999999999999999999999988875432211110000 00 011
Q ss_pred CCCcceEEEeccCCeEEEEcCCC-----CEEEEEEcC--CCeEE--EEee--CCCCCceeEEEcC-CCCeEEEEecCCCC
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKE-----NVIEVARLT--GQYRY--VLIS--GGVDQPSALAVDP-ESGYLFWSESGKIP 301 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~-----~~I~~~~~~--g~~~~--~l~~--~~~~~P~~iavdp-~~g~lywtd~g~~~ 301 (377)
...+..|++++.++.||+++... ..|..++.+ |...+ .+.. .....|++|+++| ...+||+++.. ..
T Consensus 254 ~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-s~ 332 (365)
T d1jofa_ 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-EG 332 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-SC
T ss_pred cCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-CC
Confidence 12377899999999999997543 236665554 33222 1222 2457899999998 46789999975 67
Q ss_pred eEEEEecCCCCeEEEEecCCCCce
Q psy5792 302 LIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 302 ~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
.|...+.++.....+..-.+..|.
T Consensus 333 ~v~v~~~~~~~l~~~~~~~vp~p~ 356 (365)
T d1jofa_ 333 WLEIYRWKDEFLHRVARVRIPEPG 356 (365)
T ss_dssp EEEEEEEETTEEEEEEEEECCSTT
T ss_pred eEEEEEEeCCcCcEEEEEECCCCC
Confidence 777777776654444433344443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.95 E-value=5e-07 Score=86.11 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=149.7
Q ss_pred EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEec--------C-CCceeEEeeecCCCCcccCC
Q psy5792 49 VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRN--------N-AGISDFILFSVNSGYDIMGI 117 (377)
Q Consensus 49 ~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~--------~-~~p~~i~v~~~~~~~~~~~~ 117 (377)
.+++. +.+.+|++|++ -+++||+|+...++|++++ .+|+...+..- + .+..||++ ||+-.
T Consensus 19 ~~~ia--~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~-~Pdf~------ 89 (450)
T d1crua_ 19 KKVIL--SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF-HPDFK------ 89 (450)
T ss_dssp EEEEE--CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE-CTTTT------
T ss_pred EEEEE--CCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEe-CCCCc------
Confidence 56666 77999999999 6889999998889999999 55554433321 1 11455654 44321
Q ss_pred CcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC------------CCCeEEEEEcCCCCceee--EE---EEe
Q psy5792 118 KYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN------------SGYDIMGIKYNKNESKVT--QV---LGP 180 (377)
Q Consensus 118 ~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~------------~~~~I~~~~l~~~~~~~~--~~---~~~ 180 (377)
.+.+++++.. +...+++...+....... .. ..+
T Consensus 90 ------------------------------~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p 139 (450)
T d1crua_ 90 ------------------------------NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP 139 (450)
T ss_dssp ------------------------------TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred ------------------------------cCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeeccc
Confidence 0112222100 000134444433322111 11 112
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcC--------------------------------CCcEEEEEcCCCCc---------
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDID--------------------------------HGTISRTHRDGTGR--------- 219 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~--------------------------------~~~I~~~~~~G~~~--------- 219 (377)
.........|++++ +++||++--. .++|.|++.+|+..
T Consensus 140 ~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~ 218 (450)
T d1crua_ 140 SSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGV 218 (450)
T ss_dssp CCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTE
T ss_pred ccccccccceeEcC-CCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccc
Confidence 22334577899987 6789998431 27899999998742
Q ss_pred -EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCCe----EE--------E------------
Q psy5792 220 -ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQY----RY--------V------------ 271 (377)
Q Consensus 220 -~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~~----~~--------~------------ 271 (377)
..+.. .++.+|.++++|+ ++.||.+|.+.. .|.++...+.+ +. .
T Consensus 219 ~~ei~a-------~G~RNp~g~~~~p-~g~l~~~e~G~~~~dEln~i~~G~nYGWP~~~g~~~~~~~~~~~~~~~~~~~~ 290 (450)
T d1crua_ 219 VSHIYT-------LGHRNPQGLAFTP-NGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSI 290 (450)
T ss_dssp ECSEEE-------BCCSEEEEEEECT-TSCEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTTC
T ss_pred cceEEE-------eccccccceeecc-cceeeeccccccccccccccccccccCCceecCCcCCCCcccCCccccccccc
Confidence 12344 5888899999997 789999987532 34444322110 00 0
Q ss_pred ---------------EeeC-------------------------------------CCCCceeEEEc--------CCCCe
Q psy5792 272 ---------------LISG-------------------------------------GVDQPSALAVD--------PESGY 291 (377)
Q Consensus 272 ---------------l~~~-------------------------------------~~~~P~~iavd--------p~~g~ 291 (377)
+... .-..|.++++= .-+|.
T Consensus 291 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Psiapsg~~fY~g~~~~fp~~~g~ 370 (450)
T d1crua_ 291 KDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENT 370 (450)
T ss_dssp CCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCTTCTTE
T ss_pred ccccccccccccCCCcccccccccccccccccccccccccccccccccCCCceeecccccCccceEecCCcccCcccCCC
Confidence 0000 00135566651 12678
Q ss_pred EEEEecCCCCeEEEEecCCCCeE-----EEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQT-----ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~-----~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
+|++++. ...|.++.++..... .........|.+|++.+...-||+++. ..++|++
T Consensus 371 lfvg~l~-~~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~d-~~G~i~r 431 (450)
T d1crua_ 371 LLVPSLK-RGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTD-TAGNVQK 431 (450)
T ss_dssp EEEEBSS-SCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEEC-SSCCEEC
T ss_pred EEEEECc-CCEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEEC-CCCCEec
Confidence 9999996 688999998865422 222223568999999875446899999 8899886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.74 E-value=4.9e-05 Score=70.76 Aligned_cols=309 Identities=10% Similarity=0.014 Sum_probs=178.9
Q ss_pred CCCcCCccccccCCCC-eEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-C
Q psy5792 13 PSFGAVASTLKPQSGP-FVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 13 ~~~~~~~~~~~d~~~~-~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~ 86 (377)
|....|...+++.... .++++....++|...|+... +.++ .....|.+|++ .+.+||.++. ++.|..++ .
T Consensus 16 ~~~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l---~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~ 91 (426)
T d1hzua2 16 KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI---DTGYAVHISRMSASGRYLLVIGR-DARIDMIDLW 91 (426)
T ss_dssp CGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEE---ECCSSEEEEEECTTSCEEEEEET-TSEEEEEETT
T ss_pred CcccCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEE---eCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEcc
Confidence 3445666677766544 45678889999999999876 5655 33457999999 6777888764 56889898 5
Q ss_pred CCCceEE--EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 87 DGSNSTV--LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 87 ~g~~~~~--~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
+++...+ +....++.++.+ ++.-. +. ..+++++....+.++.
T Consensus 92 t~~~~~~~~i~~~~~~~~~~~-s~~~s---------------------------pD--------G~~l~v~~~~~~~v~i 135 (426)
T d1hzua2 92 AKEPTKVAEIKIGIEARSVES-SKFKG---------------------------YE--------DRYTIAGAYWPPQFAI 135 (426)
T ss_dssp SSSCEEEEEEECCSEEEEEEE-CCSTT---------------------------CT--------TTEEEEEEEESSEEEE
T ss_pred CCceeEEEEEeCCCCCcceEE-eeeec---------------------------CC--------CCEEEEeecCCCeEEE
Confidence 6665433 333333555543 11100 00 1245555433334655
Q ss_pred EEcCCCCceeeEEEE---------ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCC
Q psy5792 165 IKYNKNESKVTQVLG---------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPV 234 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~---------~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~ 234 (377)
.+...... ...+. ..........+........++++....+.|..+....... ..... ..-
T Consensus 136 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~ 206 (426)
T d1hzua2 136 MDGETLEP--KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-------GAA 206 (426)
T ss_dssp EETTTCCE--EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-------ECC
T ss_pred EcCCccce--eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-------ccC
Confidence 55554432 11000 0112234566777777888999988888888777654332 22111 234
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEE------------------------------------E------
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV------------------------------------L------ 272 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~------------------------------------l------ 272 (377)
..|.++++++..+.+|.+....+.+.+.++....... +
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 5699999999888899987766666555543222111 0
Q ss_pred ------------eeCCCCCceeEEEcCCCCeEEEEecC-----CCCeEEEEecC-CCCeEEEEe--------cCCCCceE
Q psy5792 273 ------------ISGGVDQPSALAVDPESGYLFWSESG-----KIPLIARAGLD-GKKQTILAQ--------EIIMPIKD 326 (377)
Q Consensus 273 ------------~~~~~~~P~~iavdp~~g~lywtd~g-----~~~~I~r~~ld-G~~~~~l~~--------~~~~~P~g 326 (377)
+......|.+++++|...+|+.+... ....|...++. +....++.. +.......
T Consensus 287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~ 366 (426)
T d1hzua2 287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366 (426)
T ss_dssp TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEE
T ss_pred ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEE
Confidence 01113457888888876676654211 12356666654 333333322 11122445
Q ss_pred EEEeCCCCEEEEEEeC---CCCeEEEEEccCCceEEEEecCCCCCcc
Q psy5792 327 ITLDRKNKRVYWCYSV---GSNVLESMDYSGGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 327 lalD~~~~~LYw~d~~---~~~~i~~~~~~G~~~~~~~~~~~~~~p~ 370 (377)
+++.+.+++||++... ..++|...+........++.+..+.+|-
T Consensus 367 ~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~ 413 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPT 413 (426)
T ss_dssp EEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEE
T ss_pred EEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCC
Confidence 6777777889887531 4567888887755555556666666763
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.61 E-value=7.4e-06 Score=74.79 Aligned_cols=173 Identities=11% Similarity=0.072 Sum_probs=111.9
Q ss_pred CeEEEEEcCCCCceeeEEEEecCC------CCceEEEEEECC---CCEEEEEEcC--CCcE--EEEEcCCCCcEEEEecc
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSK------VSLAAKVDFHAA---EDYIYWVDID--HGTI--SRTHRDGTGRENIIEYV 226 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~------~~~~~~l~~d~~---~~~ly~sd~~--~~~I--~~~~~~G~~~~~i~~~~ 226 (377)
|.|..+++..... ....+.+.. .-+|.|+++... ..+||+.+.. ..+| +.+..++...+-+..
T Consensus 68 G~i~~~dl~~~~~--~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~-- 143 (340)
T d1v04a_ 68 GKILLMDLNEKEP--AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT-- 143 (340)
T ss_dssp CEEEEEETTSSSC--CEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE--
T ss_pred CeEEEEecCCCCC--cceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee--
Confidence 5688888765543 111222111 125899987432 2278888862 3344 455444432211111
Q ss_pred ccCCCCCCCCcceEEEeccCCeEEEEcCC---------------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPK---------------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 227 ~~~~~~~~~~p~~iavD~~~~~lYwtd~~---------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
.....+..|.+|++.. .+.+|+|+.. .++-.+...+++..+++.+ ++..|+||+++|.+.+
T Consensus 144 --v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~ 219 (340)
T d1v04a_ 144 --IRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKY 219 (340)
T ss_dssp --ECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSE
T ss_pred --cCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCE
Confidence 0014566799999984 7889999643 2345666677777777665 5889999999999999
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEe--cCCCCceEEEEeCCCCEEEEEEe
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQTILAQ--EIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~~l~~--~~~~~P~glalD~~~~~LYw~d~ 341 (377)
||+++.. ..+|.+..+++........ .--..|..|.+|..++.++.+-.
T Consensus 220 lyVa~t~-~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 220 VYIAELL-AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp EEEEEGG-GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred EEEEeCC-CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 9999985 6899999998765433222 12356999999987888887743
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=5.5e-05 Score=70.94 Aligned_cols=215 Identities=8% Similarity=-0.046 Sum_probs=142.2
Q ss_pred CCCcCCccccccCCCCeE-EEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-C
Q psy5792 13 PSFGAVASTLKPQSGPFV-YGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 13 ~~~~~~~~~~~d~~~~~l-y~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~ 86 (377)
|.-..|...+.+.....+ +++.+..+.|...|.++. .+++ .....|.++++ .+.++|.++. .+.|..++ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~---~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~ 91 (432)
T d1qksa2 16 APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVL---DTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLW 91 (432)
T ss_dssp CGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSEEEEEETT
T ss_pred ccccCCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEE---eCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEee
Confidence 444566666666655555 689999999999999987 5555 33457999999 6778988864 57899898 5
Q ss_pred CCCceEE--EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 87 DGSNSTV--LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 87 ~g~~~~~--~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
+++...+ +.....|.++.. ++.-. + ...+|+++....+.|+.
T Consensus 92 t~~~~~~~~i~~~~~~~~~~~-s~~~S---------------------------p--------DG~~l~vs~~~~~~v~i 135 (432)
T d1qksa2 92 MKEPTTVAEIKIGSEARSIET-SKMEG---------------------------W--------EDKYAIAGAYWPPQYVI 135 (432)
T ss_dssp SSSCCEEEEEECCSEEEEEEE-CCSTT---------------------------C--------TTTEEEEEEEETTEEEE
T ss_pred CCCceEEEEEecCCCCCCeEE-ecccC---------------------------C--------CCCEEEEEcCCCCeEEE
Confidence 5554333 333333666553 11100 0 01256666655556888
Q ss_pred EEcCCCCceeeEEEE---------ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC
Q psy5792 165 IKYNKNESKVTQVLG---------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD 235 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~---------~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~ 235 (377)
++...... ..... ......+..++.+.+.+..++++....+.|..++........+... ..-.
T Consensus 136 ~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i------~~g~ 207 (432)
T d1qksa2 136 MDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI------SAER 207 (432)
T ss_dssp EETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE------ECCS
T ss_pred EeCccccc--eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE------cccC
Confidence 88766543 11110 1123345778888888889999998889999998864332222220 1224
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 275 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~ 275 (377)
.|.++++++.++.+|.+....+.|.+.+.+.......+..
T Consensus 208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred ccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence 5999999998889999999889999999988776555543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.46 E-value=0.00037 Score=60.89 Aligned_cols=269 Identities=7% Similarity=-0.053 Sum_probs=144.1
Q ss_pred EEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC------
Q psy5792 31 YGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG------ 99 (377)
Q Consensus 31 y~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~------ 99 (377)
+++-+..++|..+|+... ..++-.......|.+|++ .+.+||++...++.|..+| .+|+....+.....
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 455667789999999876 555532234567899999 4557899988889999999 77777655542211
Q ss_pred ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC-----------CCCeEEEEEcC
Q psy5792 100 ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN-----------SGYDIMGIKYN 168 (377)
Q Consensus 100 p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~-----------~~~~I~~~~l~ 168 (377)
+.++++ +++.. .++.+.. ....+..++..
T Consensus 84 ~~~v~~-s~dg~---------------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (337)
T d1pbyb_ 84 LFGAAL-SPDGK---------------------------------------TLAIYESPVRLELTHFEVQPTRVALYDAE 123 (337)
T ss_dssp TTCEEE-CTTSS---------------------------------------EEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred eeeEEE-cCCCc---------------------------------------EEEEeecCCcceeeeccccccceeecccc
Confidence 333333 22211 1222111 01123334443
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE--eccC
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV--DWIA 246 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav--D~~~ 246 (377)
... .+..+.....+.++++++.+.++|.++ +.+..++................ ......|.+..+ +...
T Consensus 124 ~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (337)
T d1pbyb_ 124 TLS-----RRKAFEAPRQITMLAWARDGSKLYGLG---RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHES 194 (337)
T ss_dssp TTE-----EEEEEECCSSCCCEEECTTSSCEEEES---SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTT
T ss_pred CCe-----EEEeccccCCceEEEEcCCCCEEEEEc---CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccc
Confidence 332 122223344577888888888888875 23444454321111111100000 000011222111 1011
Q ss_pred CeEEEE----c----------CCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 247 QNIYWS----D----------PKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 247 ~~lYwt----d----------~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
....+. . .....+.+.++.... ...........+..+++.|...++|..+ ..|...++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~v~d~~~~ 270 (337)
T d1pbyb_ 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY----NVLESFDLEKN 270 (337)
T ss_dssp TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE----SEEEEEETTTT
T ss_pred cceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc----ccEEEEECCCC
Confidence 111111 0 001245666655333 2233333455688899999888887775 36777777644
Q ss_pred CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 312 ~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.....+.. -..|.++++.+.+++||.+.. .+.|...+....
T Consensus 271 ~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~--~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 271 ASIKRVPL-PHSYYSVNVSTDGSTVWLGGA--LGDLAAYDAETL 311 (337)
T ss_dssp EEEEEEEC-SSCCCEEEECTTSCEEEEESB--SSEEEEEETTTC
T ss_pred cEEEEEcC-CCCEEEEEECCCCCEEEEEeC--CCcEEEEECCCC
Confidence 33332332 357899999988899998865 567888887743
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.45 E-value=0.00047 Score=64.28 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=136.5
Q ss_pred eEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCC
Q psy5792 70 RIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGI 148 (377)
Q Consensus 70 ~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~ 148 (377)
-++++....+.|..+| .+++....+..+..|.++++ +|+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~f-SpDG~------------------------------------- 74 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRL-SASGR------------------------------------- 74 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEE-CTTSC-------------------------------------
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEE-CCCCC-------------------------------------
Confidence 4568888889999999 77777777776545888864 56544
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEEC----CCCEEEEEEcCCCcEEEEEcCCCCcEEEEe
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA----AEDYIYWVDIDHGTISRTHRDGTGRENIIE 224 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~----~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~ 224 (377)
+++.+..+ +.|+.+++..... ..+..+.....+.++.+.+ .+++||.+....+.|...+...........
T Consensus 75 --~l~~~s~d-g~v~~~d~~t~~~---~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~ 148 (432)
T d1qksa2 75 --YLFVIGRD-GKVNMIDLWMKEP---TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148 (432)
T ss_dssp --EEEEEETT-SEEEEEETTSSSC---CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred --EEEEEcCC-CCEEEEEeeCCCc---eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence 56666543 4699999876544 2233334445677776654 467899999888999999887544333222
Q ss_pred ccccCCC----CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEE-EeeCCCCCceeEEEcCCCCeEEEEecC
Q psy5792 225 YVETGDP----TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYV-LISGGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 225 ~~~~~~~----~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~-l~~~~~~~P~~iavdp~~g~lywtd~g 298 (377)
....... ..-+.+.++++.+.+..+|++....++|...+..... .++ -+. ....|.+++++|...++|.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANA 227 (432)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGG
T ss_pred cCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccc
Confidence 1000000 1123466788888788899999989999999886543 222 223 24679999999988889999864
Q ss_pred CCCeEEEEecCCCCeEEEEe
Q psy5792 299 KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 299 ~~~~I~r~~ldG~~~~~l~~ 318 (377)
...|...+.+.........
T Consensus 228 -~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 228 -RNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp -GTEEEEEETTTTEEEEEEE
T ss_pred -cceEEEeecccceEEEEec
Confidence 5788888877655544443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.36 E-value=3.3e-05 Score=70.29 Aligned_cols=118 Identities=7% Similarity=-0.009 Sum_probs=86.0
Q ss_pred CcceEEEecc---CCeEEEEcC--CCCEEEEEEcC--CCe---EEEEeeCCCCCceeEEEcCCCCeEEEEecCC------
Q psy5792 236 QFTDIAVDWI---AQNIYWSDP--KENVIEVARLT--GQY---RYVLISGGVDQPSALAVDPESGYLFWSESGK------ 299 (377)
Q Consensus 236 ~p~~iavD~~---~~~lYwtd~--~~~~I~~~~~~--g~~---~~~l~~~~~~~P~~iavdp~~g~lywtd~g~------ 299 (377)
.|.||.+-.. ...||+.++ ...+|+++.++ +.. +..+....+..|..|++.. .|.+|+|+...
T Consensus 98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~ 176 (340)
T d1v04a_ 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 176 (340)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHH
T ss_pred eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhh
Confidence 5999987321 226899887 34578877775 332 2233334578899999996 77899996321
Q ss_pred --------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 300 --------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 300 --------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.+.-.....++...+++... +..|+||++++.++.||+++. ...+|.+..+++..
T Consensus 177 ~~~e~~~~~~~g~v~~~~~~~~~~~~~~-l~~pNGI~~s~d~~~lyVa~t-~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 177 KSWEMHLGLAWSFVTYYSPNDVRVVAEG-FDFANGINISPDGKYVYIAEL-LAHKIHVYEKHANW 239 (340)
T ss_dssp HHHHHHTTCCCEEEEEECSSCEEEEEEE-ESSEEEEEECTTSSEEEEEEG-GGTEEEEEEECTTS
T ss_pred hhhhHhhcCCceeEEEEcCCceEEEcCC-CCccceeEECCCCCEEEEEeC-CCCeEEEEEeCCCc
Confidence 23445566677777776665 899999999998999999999 99999999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.36 E-value=0.00029 Score=65.23 Aligned_cols=196 Identities=8% Similarity=-0.039 Sum_probs=134.5
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
..++++....|.|+.+++..... +..+.....+.+++|.+.+++||.++. .+.|...+++......+...
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~-----~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i---- 101 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKI-----VKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEI---- 101 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSE-----EEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEE----
T ss_pred eEEEEEEcCCCEEEEEECCCCcE-----EEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEE----
Confidence 35678887778899999987643 223334457999999999999998874 57899999875543333220
Q ss_pred CCCCCCCcceEEEec----cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-----------CCCceeEEEcCCCCeEEE
Q psy5792 230 DPTPVDQFTDIAVDW----IAQNIYWSDPKENVIEVARLTGQYRYVLISGG-----------VDQPSALAVDPESGYLFW 294 (377)
Q Consensus 230 ~~~~~~~p~~iavD~----~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-----------~~~P~~iavdp~~g~lyw 294 (377)
.....|.++++.. .++.||.+....+.+...+............. ...+..++..+....+++
T Consensus 102 --~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~ 179 (426)
T d1hzua2 102 --KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179 (426)
T ss_dssp --ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred --eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEE
Confidence 1233578887763 46778999888888988888776544333211 233467788887888888
Q ss_pred EecCCCCeEEEEecCCC-CeE-EEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 295 SESGKIPLIARAGLDGK-KQT-ILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 295 td~g~~~~I~r~~ldG~-~~~-~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
+..+ ...|........ ... ..+.. -..|.++++++..+++|.+.. ..+.+..++.........
T Consensus 180 ~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~a~~-~~~~~~~~~~~~~~~~~~ 244 (426)
T d1hzua2 180 NVKE-TGKVLLVNYKDIDNLTVTSIGA-APFLADGGWDSSHRYFMTAAN-NSNKVAVIDSKDRRLSAL 244 (426)
T ss_dssp EETT-TTEEEEEECSSSSSCEEEEEEC-CSSEEEEEECTTSCEEEEEET-TCSEEEEEETTTTEEEEE
T ss_pred ecCC-CCeEEEEEeccccceeeEEecc-CCccEeeeECCCCcEEEeeee-cccceeeeecccccEEEE
Confidence 8865 567766655433 222 22232 468999999999999999998 888888888775443333
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.35 E-value=1.3e-05 Score=75.98 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=106.8
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-CCCCCCCcceEEEec---cCCeEEEEcC--
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-DPTPVDQFTDIAVDW---IAQNIYWSDP-- 254 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~~~~~~~p~~iavD~---~~~~lYwtd~-- 254 (377)
.+++.+|.+|++.+ +++||+++...++|++++.++...+.+....... ...+-...-+||+|+ .++.||++..
T Consensus 23 a~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~ 101 (450)
T d1crua_ 23 LSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (450)
T ss_dssp ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred ECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecC
Confidence 45788999999998 6799999987899999987766555554311000 001112356899997 3678888632
Q ss_pred -------C---CCEEEEEEcCCCe-----EEEEeeC----CCCCceeEEEcCCCCeEEEEecC-----------------
Q psy5792 255 -------K---ENVIEVARLTGQY-----RYVLISG----GVDQPSALAVDPESGYLFWSESG----------------- 298 (377)
Q Consensus 255 -------~---~~~I~~~~~~g~~-----~~~l~~~----~~~~P~~iavdp~~g~lywtd~g----------------- 298 (377)
. ...|.+...+... .++++.. ....-..|+++| .|+||++--.
T Consensus 102 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~~~~ 180 (450)
T d1crua_ 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQH 180 (450)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTC
T ss_pred CCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCccccccccccccccc
Confidence 1 1135555554431 2233321 223457899998 7899998521
Q ss_pred --------------CCCeEEEEecCCCCe----------EEEEecCCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 299 --------------KIPLIARAGLDGKKQ----------TILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 299 --------------~~~~I~r~~ldG~~~----------~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
...+|.|++.||+.. ..+....+.+|.|+++|+ +++||.+|. +..
T Consensus 181 ~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~-G~~ 249 (450)
T d1crua_ 181 TPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQ-GPN 249 (450)
T ss_dssp CCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEE-CSS
T ss_pred CcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccc-ccc
Confidence 026899999998742 235555699999999996 789999998 654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.27 E-value=4.1e-05 Score=71.85 Aligned_cols=151 Identities=10% Similarity=-0.029 Sum_probs=100.0
Q ss_pred CCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEE--------------
Q psy5792 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVI-------------- 259 (377)
Q Consensus 194 ~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I-------------- 259 (377)
+.+++||++|..+++|.+++++......++.. .....|.++++.+..+.+|++......+
T Consensus 81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 81 YDGKYLFINDKANTRVARIRLDIMKTDKITHI------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCcEeeEEec------CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 44889999999999999999985444444430 2356799999998788899886544433
Q ss_pred ----EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC-------------eEEEE---------------e
Q psy5792 260 ----EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP-------------LIARA---------------G 307 (377)
Q Consensus 260 ----~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~-------------~I~r~---------------~ 307 (377)
.+.+.......--+.. -..|.+++++|..+++|++..+.+. .|... .
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT 233 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred cceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence 3344443322111111 2469999999999999999754211 11111 0
Q ss_pred -----------cCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 308 -----------LDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 308 -----------ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.........+.. -..|.|+++++.++++|.+.. ..++|..++++
T Consensus 234 v~~~~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~-~~~tvsv~d~~ 288 (441)
T d1qnia2 234 IGDSKVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGK-LSPTVSVIAID 288 (441)
T ss_dssp CTTCCCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECT-TSSBEEEEEGG
T ss_pred eCCCCcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCC-cCCcEEEEEee
Confidence 111112222222 256999999999999999998 89999999864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.26 E-value=0.00047 Score=60.50 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=53.8
Q ss_pred cccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEE
Q psy5792 20 STLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVL 94 (377)
Q Consensus 20 ~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~ 94 (377)
|+++...++.|+. -+..+.|..+|++.. ++++. .+....|.+|++ .+.++|+++...+.|..++ .+++....+
T Consensus 1 g~a~~~~~~~l~~-~~~~~~v~v~D~~t~~~~~t~~-~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 1 GPALKAGHEYMIV-TNYPNNLHVVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCCTTCEEEEE-EETTTEEEEEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccCCCCCcEEEE-EcCCCEEEEEECCCCCEEEEEE-cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 5677776555544 455678999999877 45442 245667999999 4568999999899999999 667665544
Q ss_pred e
Q psy5792 95 R 95 (377)
Q Consensus 95 ~ 95 (377)
.
T Consensus 79 ~ 79 (346)
T d1jmxb_ 79 N 79 (346)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.23 E-value=0.0015 Score=58.24 Aligned_cols=287 Identities=9% Similarity=-0.032 Sum_probs=151.3
Q ss_pred cCCccccccCCCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC---------
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--------- 78 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--------- 78 (377)
..+.++++.+++.++|++... ..+|..+|.+.. +.++- ....| ++++ .+.+||++....
T Consensus 21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~---~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN---GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe---CCCCc-cEEEcCCCCEEEEEeecCCcccccccc
Confidence 456788899999999998664 367899987555 55542 22233 6777 677889886543
Q ss_pred CceEEEc-CCCCceEEEecCCC--------ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCC
Q psy5792 79 GNIRSIN-LDGSNSTVLRNNAG--------ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGIS 149 (377)
Q Consensus 79 ~~I~~~~-~~g~~~~~~~~~~~--------p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~ 149 (377)
+.|..++ .+++....+..... |.++.+ .++.
T Consensus 97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg--------------------------------------- 136 (373)
T d2madh_ 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN-TPNN--------------------------------------- 136 (373)
T ss_pred eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE-EeCC---------------------------------------
Confidence 4466666 45544433321111 111111 1100
Q ss_pred cEEEEEe-CCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 150 DFILFSV-NSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 150 ~~l~~s~-~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
..+++.. ...+.+...+...... ......+.++.+.+.+..+|++....+++...+............. .
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~-~ 207 (373)
T d2madh_ 137 ADLLFFQFAAGPAVGLVVQGGSSD--------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA-M 207 (373)
T ss_pred CcEEEEEEcCCCceEEeeccCCeE--------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee-c
Confidence 1111111 1111122222222211 1122346677788878899999888899988887654332222100 0
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC------------CCCCceeEEEcCCCCeEEEEe
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG------------GVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~------------~~~~P~~iavdp~~g~lywtd 296 (377)
........+..++.+ .+..+......+++.+.+..+.....+... ....+..+++.+....+|++.
T Consensus 208 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 285 (373)
T d2madh_ 208 LTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred cccCccceeeeEEEC--CCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence 000111123334444 333333334445666666655432211110 112346678888888888875
Q ss_pred cC--------CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE-EEEEEeCCCCeEEEEEccCCceEE
Q psy5792 297 SG--------KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR-VYWCYSVGSNVLESMDYSGGSKMQ 359 (377)
Q Consensus 297 ~g--------~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~-LYw~d~~~~~~i~~~~~~G~~~~~ 359 (377)
.. ....|...+.........+.. -..|.++++.+..++ ||.+.. ..+.|...|...+....
T Consensus 286 ~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~vt~~-~d~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCceEEeecCCCeEEEEECCCCcEEEEecC-CCCeeEEEECCCCCEEEEEEeC-CCCeEEEEECCCCCEEE
Confidence 32 123555555543332222222 257899999876665 566777 88899999987554433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.19 E-value=0.0018 Score=57.24 Aligned_cols=276 Identities=10% Similarity=-0.010 Sum_probs=142.6
Q ss_pred Cccc-cccCCCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCC---------CC
Q psy5792 18 VAST-LKPQSGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN---------DG 79 (377)
Q Consensus 18 ~~~~-~~d~~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~---------~~ 79 (377)
|..+ +..+++.++|+++.. ...|+.+|.+.. +.++- ....| ++++ .+.+||+++.. .+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---GGFLP-NPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE---ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE---CCCCC-ceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 4444 456788899999753 456999999776 55553 23334 6888 66679988642 34
Q ss_pred ceEEEc-CCCCceEEEecCCC--------ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCc
Q psy5792 80 NIRSIN-LDGSNSTVLRNNAG--------ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISD 150 (377)
Q Consensus 80 ~I~~~~-~~g~~~~~~~~~~~--------p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~ 150 (377)
.|..+| .+++....+..... |.++.+ .++ ..
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d---------------------------------------g~ 118 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-TPD---------------------------------------GK 118 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-CTT---------------------------------------SS
T ss_pred EEEEEECCCCCEEEEEecCCcceeecCCCCceEEE-ecC---------------------------------------CC
Confidence 677788 56655444331110 222221 111 12
Q ss_pred EEEEEeCC-CCeEEEEEcCCCCceeeEEEEecCC------CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEE
Q psy5792 151 FILFSVNS-GYDIMGIKYNKNESKVTQVLGPLSK------VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENII 223 (377)
Q Consensus 151 ~l~~s~~~-~~~I~~~~l~~~~~~~~~~~~~~~~------~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~ 223 (377)
.+++++.. ...+...+...... . ...+... ......+.+...+..+++.....+.+..........
T Consensus 119 ~~~v~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---- 191 (355)
T d2bbkh_ 119 TLLFYQFSPAPAVGVVDLEGKAF--K-RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---- 191 (355)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE--E-EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----
T ss_pred eeEEecCCCCceeeeeecCCCcE--e-eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----
Confidence 34444322 11233344433211 0 0111110 112233444554566666555444444433321110
Q ss_pred eccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC--C----------CCCceeEEEcCCCCe
Q psy5792 224 EYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG--G----------VDQPSALAVDPESGY 291 (377)
Q Consensus 224 ~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~--~----------~~~P~~iavdp~~g~ 291 (377)
.........+.....+.+.|+. ..+++.+.++++.....+... . ...+..+++++....
T Consensus 192 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~ 262 (355)
T d2bbkh_ 192 --------EDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 262 (355)
T ss_dssp --------TTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred --------eecceeeeccccCCCCeEEEec-CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence 0001122233443445555553 335677777766543322110 0 123456999999999
Q ss_pred EEEEecCC--------CCeEEEEecCCCC-eEEEEecCCCCceEEEEeCCCCE-EEEEEeCCCCeEEEEEccCCc
Q psy5792 292 LFWSESGK--------IPLIARAGLDGKK-QTILAQEIIMPIKDITLDRKNKR-VYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 292 lywtd~g~--------~~~I~r~~ldG~~-~~~l~~~~~~~P~glalD~~~~~-LYw~d~~~~~~i~~~~~~G~~ 356 (377)
+||+.... ...|...++.... ...+-.. ..|.++++.+.++. ||.+.. ..+.|..++...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~-~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALST-GDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCC
T ss_pred EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC--CCEEEEEEcCCCCeEEEEEEC-CCCEEEEEECCCCC
Confidence 99986421 1357777766433 2333222 46889999876654 666766 78999999986444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.13 E-value=0.00075 Score=58.86 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=50.3
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG 310 (377)
.+..+++.+....+|..+ +.|.+.++........+.. ...|.+++++|.+.+||.+.. .+.|...+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~--~~~i~v~D~~t 310 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGA--LGDLAAYDAET 310 (337)
T ss_dssp CEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESB--SSEEEEEETTT
T ss_pred ceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCEEEEEeC--CCcEEEEECCC
Confidence 477778887666676664 5799999987654444443 457999999998889999864 46788777763
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.07 E-value=0.0035 Score=56.22 Aligned_cols=282 Identities=7% Similarity=-0.048 Sum_probs=150.2
Q ss_pred cCCccccccCCCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCC---------C
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN---------D 78 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~---------~ 78 (377)
+.+..++....+++.|++... ...|+.+|.++. +.++. ....| ++++ .+..||+++.. +
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~---~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL---GAFLS-LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEe---CCCCC-cceECCCCCEEEEEcccCccccccccC
Confidence 344555666777888877643 456889999888 44442 22234 5777 55678887642 2
Q ss_pred CceEEEc-CCCCceEEEecC--------CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCC
Q psy5792 79 GNIRSIN-LDGSNSTVLRNN--------AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGIS 149 (377)
Q Consensus 79 ~~I~~~~-~~g~~~~~~~~~--------~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~ 149 (377)
+.|..+| .+++....+... ..|.++.+ +++.
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~-SpDG--------------------------------------- 135 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN-CASS--------------------------------------- 135 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE-CTTS---------------------------------------
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEE-CCCC---------------------------------------
Confidence 3478888 566654443210 01333433 2222
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.+|++++...+.+..+++..... .. ..+........ -+ ....+++....+++..+..+..............
T Consensus 136 k~l~va~~~~~~v~~~d~~~~~~--~~-~~~~~~~~~~~---~~--~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~ 207 (368)
T d1mdah_ 136 ACLLFFLFGSSAAAGLSVPGASD--DQ-LTKSASCFHIH---PG--AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEE--EE-EEECSSCCCCE---EE--ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred CEEEEEeCCCCeEEEEECCCCcE--eE-EeeccCcceEc---cC--CCceEEEEcCCCCEEEEEecCCceeeeeeecccc
Confidence 25777776656688888876643 11 22222211111 11 2334444445566666665433222221100000
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC------------CCCceeEEEcCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG------------VDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~------------~~~P~~iavdp~~g~lywtd~ 297 (377)
. .....+...+.+. .+.++++.. +++.++++++.....+.... -..+..+++++..+.+|++..
T Consensus 208 ~-~~~~~~~~~~~~~-~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~ 283 (368)
T d1mdah_ 208 G-AQNCSSQAAQANY-PGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp T-TSCBCSCCEEETT-TTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred c-ccccceeeccccc-CcEEEEecC--CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEec
Confidence 0 1112244455553 344444433 34556665554332222111 123567999999999999853
Q ss_pred CC-------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccCC
Q psy5792 298 GK-------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 298 g~-------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.. ..+|+..+.....+..-+.. -..|.++++.+..+ .||.+.. ..+.|..+|...+
T Consensus 284 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~tg 347 (368)
T d1mdah_ 284 EHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSA-GTEVLDIYDAASD 347 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEET-TTTEEEEEESSSC
T ss_pred CCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeC-CCCeEEEEECCCC
Confidence 21 13577777664332211111 14688999987765 5899988 8899999998744
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.07 E-value=0.0001 Score=69.02 Aligned_cols=283 Identities=10% Similarity=0.027 Sum_probs=153.1
Q ss_pred eEEEEeCCCCcEEEEEcCCc--EEEEEeCC--------------------------CCCceEEEE----EECCeEEEEcC
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK--VAKVVSMP--------------------------DAAQVVAAV----FYKGRIIYSDA 76 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~--~~~i~~~~--------------------------~~~~p~~la----v~~~~ly~td~ 76 (377)
.+||+...+++|..+++-.. .++|-... ..-+|.... ..+.+||++|.
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 57888888999999997544 66652100 011353322 25778999999
Q ss_pred CCCceEEEc-CCCCceEEEec--CCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEE
Q psy5792 77 NDGNIRSIN-LDGSNSTVLRN--NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153 (377)
Q Consensus 77 ~~~~I~~~~-~~g~~~~~~~~--~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~ 153 (377)
.+.+|.+++ .+++...++.- ..+|.|+++....+.. ... |.. .....++..+... .+ ...+.
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~-YV~--~~~----~~~v~~~~dg~~~-----~~--~~~~~- 156 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN-YVF--CNA----EFVIPQPNDGTDF-----SL--DNSYT- 156 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC-EEE--EEE----CSCEESSCSSSCC-----CG--GGEEE-
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE-EEE--ecc----CCcccccCccccc-----cc--ccccc-
Confidence 999999999 77776666543 3339998874222210 000 000 0000110000000 00 00000
Q ss_pred EEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCC
Q psy5792 154 FSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPT 232 (377)
Q Consensus 154 ~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~ 232 (377)
.+..++...... . ...++ ..++..+++++.++++|++...++.+..+.... .....+..
T Consensus 157 -------~~~~iD~~t~~v--~-~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v-------- 216 (441)
T d1qnia2 157 -------MFTAIDAETMDV--A-WQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV-------- 216 (441)
T ss_dssp -------EEEEEETTTCSE--E-EEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE--------
T ss_pred -------eEEeecCcccee--e-EEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe--------
Confidence 133444444322 1 11222 246888999999999999998766554333221 12222221
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC---
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--- 309 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--- 309 (377)
...|.++++-+.++.+++.+ ++.+.+...........+.. ...|+|++++|...++|.+... .+.|...+++
T Consensus 217 -~n~p~~~~~~~dGk~~~v~~--~~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~-~~tvsv~d~~k~~ 291 (441)
T d1qnia2 217 -FNVERIAAAVKAGNFKTIGD--SKVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKL-SPTVSVIAIDKLD 291 (441)
T ss_dssp -EEHHHHHHHHHTTCCBCCTT--CCCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTT-SSBEEEEEGGGHH
T ss_pred -CCccceEEEecCCCEEEeCC--CCcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCc-CCcEEEEEeehhh
Confidence 22466666655555554432 23333333333322223333 5679999999999999999864 5777777643
Q ss_pred ----CC--CeEEEEec-CC-CCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 310 ----GK--KQTILAQE-II-MPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 310 ----G~--~~~~l~~~-~~-~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+. .+.+++.+ ++ ..|..-++|. .++.|-+-. -...|.+-+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~-~ds~v~kw~~~ 341 (441)
T d1qnia2 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLF-IDSQVCKWNIA 341 (441)
T ss_dssp HHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEET-TTTEEEEEEHH
T ss_pred hHhhccCCcceEEEeecccccCcccceecC-CceEEEccc-ccceEEEeccc
Confidence 21 12222222 21 2366678885 578998877 67777777653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.97 E-value=0.00023 Score=62.55 Aligned_cols=74 Identities=5% Similarity=-0.006 Sum_probs=52.3
Q ss_pred eeEeeccccCCC--------CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCC----CCCceEEEEE--
Q psy5792 3 YLHVLPYTRNPS--------FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMP----DAAQVVAAVF-- 66 (377)
Q Consensus 3 ~~~~~~~~~~~~--------~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~----~~~~p~~lav-- 66 (377)
-|+|.|...... ...|.++++++++.+||++....+.|...|++.. ..++.... ....|.++++
T Consensus 19 ~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~ 98 (346)
T d1jmxb_ 19 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98 (346)
T ss_dssp EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec
Confidence 355556554433 3479999999999999999999999999999877 44443111 1235778888
Q ss_pred ECCeEEEEcC
Q psy5792 67 YKGRIIYSDA 76 (377)
Q Consensus 67 ~~~~ly~td~ 76 (377)
.+.++|+++.
T Consensus 99 DG~~l~v~~~ 108 (346)
T d1jmxb_ 99 DGKEVYATVN 108 (346)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEec
Confidence 5668888864
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.0069 Score=51.26 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=75.6
Q ss_pred EEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CEEEEEEc
Q psy5792 189 KVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NVIEVARL 264 (377)
Q Consensus 189 ~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~I~~~~~ 264 (377)
........+.++++.... ..|+..++++.....+.. ........++.+....+++..... ..|.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 131 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW--------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC--------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ccccccccccceecccccCCceEeeeecccccceeeec--------ccccccccccccccceeEEEeecCCceeeeEeec
Confidence 334455567777776543 378888888765444432 222333445555566677665443 46788888
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe-cCCCCeEEEEecCCCCeEEEEec
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd-~g~~~~I~r~~ldG~~~~~l~~~ 319 (377)
++...+.+.... .-...+..|...+|+|+. .+....|+..+++|...+.|...
T Consensus 203 ~~~~~~~~~~~~--~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~ 256 (269)
T d2hqsa1 203 ATGGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 256 (269)
T ss_dssp TTCCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred ccccceEeecCc--cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC
Confidence 877665544322 224567999888886654 33357899999999887765553
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.81 E-value=0.0096 Score=52.75 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=57.1
Q ss_pred cceEEEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeE-EEEecCCCCeEEEE
Q psy5792 237 FTDIAVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL-FWSESGKIPLIARA 306 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l-ywtd~g~~~~I~r~ 306 (377)
+..+++.+....+|++... .+.|.+.+.........+.. ...|.++++.|....+ |.+..+ ...|...
T Consensus 269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~vt~~~-d~~v~v~ 346 (373)
T d2madh_ 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAG-TEVLHIY 346 (373)
T ss_pred ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC-CCCeeEEEECCCCCEEEEEEeCC-CCeEEEE
Confidence 4456666667777776443 35677777655443333332 4568999999976554 556543 5788888
Q ss_pred ecC-CCCeEEEEecCCCCceEEEEe
Q psy5792 307 GLD-GKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 307 ~ld-G~~~~~l~~~~~~~P~glalD 330 (377)
++. |+....+..- -..|++|++.
T Consensus 347 D~~tg~~~~~~~~~-g~~P~~l~~~ 370 (373)
T d2madh_ 347 DAGAGDQDQSTVEL-GSGPQVLSVM 370 (373)
T ss_pred ECCCCCEEEEECCC-CCCCcEEEEe
Confidence 876 4444444432 2679999995
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.74 E-value=0.0015 Score=58.72 Aligned_cols=220 Identities=9% Similarity=-0.002 Sum_probs=120.7
Q ss_pred CCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCc-
Q psy5792 14 SFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSN- 90 (377)
Q Consensus 14 ~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~- 90 (377)
+...|.++++.+++++||+++...+.|..+|+.+. ....+... ....+.-.+...+++...++.+..+. .++..
T Consensus 122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA---SCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS---SCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc---CcceEccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 45678999999999999999988899999999888 44443211 11122334555666666666666665 22222
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
......... +........ ....+..++++.... +..+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~g~~~~~~~~~--v~~~~~~~ 240 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAA------------------------------------QANYPGMLVWAVASS--ILQGDIPA 240 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE------------------------------------EETTTTEEEECBSSC--CEEEECCS
T ss_pred eeeeecccccccccceeec------------------------------------ccccCcEEEEecCCC--EEEEeecC
Confidence 111110000 000000000 000112344444333 55555544
Q ss_pred CCceeeEEEEecCC-----------CCceEEEEEECCCCEEEEEEcCC--------CcEEEEEcCCCCcEEEEeccccCC
Q psy5792 170 NESKVTQVLGPLSK-----------VSLAAKVDFHAAEDYIYWVDIDH--------GTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 170 ~~~~~~~~~~~~~~-----------~~~~~~l~~d~~~~~ly~sd~~~--------~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
... ..+..... ......+++.+..+.+|++.... .+|+.++..... .+...
T Consensus 241 ~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~----- 310 (368)
T d1mdah_ 241 AGA---TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPI----- 310 (368)
T ss_dssp SCC---EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECC-----
T ss_pred Cce---EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEe-----
Confidence 322 01111000 01123467788899999975433 257777776432 22210
Q ss_pred CCCCCCcceEEEeccCC-eEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc
Q psy5792 231 PTPVDQFTDIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~-~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 286 (377)
..-..|.++++.+..+ .||.+....+.|.+.+.......--+.. ...|++|+|-
T Consensus 311 -~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~-g~~P~~l~~~ 365 (368)
T d1mdah_ 311 -SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL-DKGPESLSVQ 365 (368)
T ss_dssp -EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC-CSCCCEEECC
T ss_pred -cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC-CCCCCEEEEe
Confidence 0113488999988665 4899999889999999875543333332 3569999984
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.9e-06 Score=51.33 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.9
Q ss_pred CCC-cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 116 GIK-YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+.| |..++++|+|+|++.++++. +.||+
T Consensus 1 G~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~ 32 (40)
T d3bpse1 1 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32 (40)
T ss_dssp CSCGGGTGGGGCSSEEEECSSSEEEECCTTCC
T ss_pred CcccCCCCCCCCcCEEEcCCCCEEEECCCCCE
Confidence 468 99999999999999999988 77775
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.69 E-value=0.01 Score=52.05 Aligned_cols=268 Identities=8% Similarity=0.035 Sum_probs=134.2
Q ss_pred CCccccccCCCCeEEEEeCC---------CCcEEEEEcCCc--EEEEEeC-----CCCCceEEEEE--ECCeEEEEcCCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTL---------SHSLHYVNIEVK--VAKVVSM-----PDAAQVVAAVF--YKGRIIYSDAND 78 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~---------~~~I~~~~~dG~--~~~i~~~-----~~~~~p~~lav--~~~~ly~td~~~ 78 (377)
+..++++.+++++||++... .+.|...|+.+. ...+... .....|.++++ .++++|+++...
T Consensus 48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~ 127 (355)
T d2bbkh_ 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127 (355)
T ss_dssp SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence 44579999999999998652 467888998776 4444311 12345777888 677899988765
Q ss_pred Cc-eEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe
Q psy5792 79 GN-IRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156 (377)
Q Consensus 79 ~~-I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~ 156 (377)
.. +...+ .+++....+.....+. +....+.... ........+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------------~~~~dg~~~~v~~ 175 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCYH-IFPTAPDTFF-------------------------------MHCRDGSLAKVAF 175 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEE-EEEEETTEEE-------------------------------EEETTSCEEEEEC
T ss_pred CceeeeeecCCCcEeeEEecCCcce-EeecCCcceE-------------------------------EEcCCCCEEEEEe
Confidence 44 44455 5555554443211111 0000000000 0000001233333
Q ss_pred CCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC---CCCC
Q psy5792 157 NSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG---DPTP 233 (377)
Q Consensus 157 ~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~---~~~~ 233 (377)
...+.+..+....... ..........+......+.|+. ..++++.+++++.....+....... ....
T Consensus 176 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (355)
T d2bbkh_ 176 GTEGTPEITHTEVFHP---------EDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245 (355)
T ss_dssp CSSSCCEEEECCCCSC---------TTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred cCCCeEEEEecccccc---------eecceeeeccccCCCCeEEEec-CCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence 2222233333322111 0000011122333344555543 3456666666544322221100000 0000
Q ss_pred --CCCcceEEEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe-EEEEecCCCC
Q psy5792 234 --VDQFTDIAVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY-LFWSESGKIP 301 (377)
Q Consensus 234 --~~~p~~iavD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~-lywtd~g~~~ 301 (377)
...+..+++.+....+|++... .+.|.+.++.......-+.. -..|.++++.|.... +|.+..+ ..
T Consensus 246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~-d~ 323 (355)
T d2bbkh_ 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTG-DK 323 (355)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETT-TT
T ss_pred eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECC-CC
Confidence 1124568898888889987432 24788888875433222221 245899999997554 5666543 57
Q ss_pred eEEEEecC-CCCeEEEEecCCCCceEEEE
Q psy5792 302 LIARAGLD-GKKQTILAQEIIMPIKDITL 329 (377)
Q Consensus 302 ~I~r~~ld-G~~~~~l~~~~~~~P~glal 329 (377)
.|...++. |+..+.+... =..|.-+++
T Consensus 324 ~i~v~D~~tg~~~~~i~~~-G~~p~~i~~ 351 (355)
T d2bbkh_ 324 TLYIHDAESGEELRSVNQL-GHGPQVITT 351 (355)
T ss_dssp EEEEEETTTCCEEEEECCC-CSSCCEEEC
T ss_pred EEEEEECCCCCEEEEEeCc-CCCccEEEe
Confidence 89888875 4433443322 245776665
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.59 E-value=0.019 Score=50.02 Aligned_cols=240 Identities=7% Similarity=-0.049 Sum_probs=140.2
Q ss_pred ceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCC
Q psy5792 60 QVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSK 135 (377)
Q Consensus 60 ~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~ 135 (377)
.|..|+. .++.|+++. .+.|...+ .+++..+++..... +..+++ +|+.+
T Consensus 19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~-sp~g~------------------------ 71 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGY------------------------ 71 (311)
T ss_dssp CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEE-CTTSS------------------------
T ss_pred CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCEEEEEE-eCCCC------------------------
Confidence 4455666 666777764 34576666 56666666654333 455544 44322
Q ss_pred ccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEc
Q psy5792 136 VSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHR 214 (377)
Q Consensus 136 ~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~ 214 (377)
+| ++....|.|+..++...... ....+. .....+.++++.+.+..|..+... ...+...+.
T Consensus 72 ---------------~l-atg~~dg~i~iwd~~~~~~~-~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~ 133 (311)
T d1nr0a1 72 ---------------YC-ASGDVHGNVRIWDTTQTTHI-LKTTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133 (311)
T ss_dssp ---------------EE-EEEETTSEEEEEESSSTTCC-EEEEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred ---------------eE-eccccCceEeeeeeeccccc-cccccc-cccCcccccccccccccccccccccccccccccc
Confidence 34 33333456888888765431 111111 123457889999877777665432 234555566
Q ss_pred CCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEE
Q psy5792 215 DGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFW 294 (377)
Q Consensus 215 ~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lyw 294 (377)
+......... .....+..+++.+.++.++++-...+.|...++.................+++.+|...+|+.
T Consensus 134 ~~~~~~~~l~-------~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~ 206 (311)
T d1nr0a1 134 DTGTSNGNLT-------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206 (311)
T ss_dssp TTCCBCBCCC-------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccc-------ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccc
Confidence 5322211111 223457889998877777887777788999999877665555544555689999997666666
Q ss_pred EecCCCCeEEEEecCCCCeEEEEecC-------CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 295 SESGKIPLIARAGLDGKKQTILAQEI-------IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 295 td~g~~~~I~r~~ldG~~~~~l~~~~-------~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
+.. ...|...++............ -.....+++.+.+..|+.+ . ..+.|.-.++..+
T Consensus 207 ~~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg-s-~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 207 TGG--DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA-S-ADKTIKIWNVATL 270 (311)
T ss_dssp EET--TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE-E-TTSEEEEEETTTT
T ss_pred ccc--cccccccccccccccccccccccccccccccccccccCCCCCEEEEE-e-CCCeEEEEECCCC
Confidence 543 356766666543333222221 1235678887666666554 4 4667877777643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.58 E-value=0.02 Score=51.40 Aligned_cols=197 Identities=11% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEEC---------CeEEEEcCCCC--ce--EEEcCCCCce
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYK---------GRIIYSDANDG--NI--RSINLDGSNS 91 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~---------~~ly~td~~~~--~I--~~~~~~g~~~ 91 (377)
+...|+-+|-+.+ |+..|++|+ +..+ ....+..+++.. +.++.|+...+ +| +.++......
T Consensus 39 ~~SlI~gTdK~~G-l~vYdL~G~~l~~~----~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 39 QNSKLITTNKKSG-LAVYSLEGKMLHSY----HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGCEEEEEETTSC-CEEEETTCCEEEEC----CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred CccEEEEEcCcCC-EEEEcCCCcEEEec----ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 4456766766555 999999999 6654 355777777732 34677777543 34 3344222222
Q ss_pred EEEec-------CC-CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 92 TVLRN-------NA-GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 92 ~~~~~-------~~-~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
..+.. .. .++|+++|..... ....++.....|.+.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~-------------------------------------g~~~afv~~k~G~v~ 156 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKT-------------------------------------GKYYAMVTGKEGEFE 156 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTT-------------------------------------CCEEEEEECSSSEEE
T ss_pred ccccccccccccccCcceEEEEEecCCC-------------------------------------CeEEEEEEcCCceEE
Confidence 22211 11 2556666543211 112334444455666
Q ss_pred EEEcC--CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEeccccCCCCCCCCcce
Q psy5792 164 GIKYN--KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYVETGDPTPVDQFTD 239 (377)
Q Consensus 164 ~~~l~--~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~~~~~~~~~~~p~~ 239 (377)
...+. ....-....+-.+...+.+.|+.+|...++||+++. ...|++...+ +.....++....+. .-.+.|+|
T Consensus 157 q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~--~l~~D~EG 233 (353)
T d1h6la_ 157 QYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGR--HLTPDIEG 233 (353)
T ss_dssp EEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSS--SCCSCEEE
T ss_pred EEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCc--cccCCccc
Confidence 65552 222100112223344567999999999999999986 4678988875 22333333211110 12346999
Q ss_pred EEEec---cCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 240 IAVDW---IAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 240 iavD~---~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
||+=. ..+.|..++++.++..+.+..+.
T Consensus 234 laiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 234 LTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred cEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99732 24578888888888888887664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.56 E-value=0.021 Score=49.79 Aligned_cols=237 Identities=12% Similarity=0.046 Sum_probs=137.2
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.+.|..++.++++++|+++. .+.|...+++.. ...++ ..+......+++ .++.+..+-..++.|...+ .+++..
T Consensus 17 r~~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 34667788899999987764 456888888765 43343 144556788888 3445555555677888887 444332
Q ss_pred --EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEe-CCCCeEEEEEc
Q psy5792 92 --TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV-NSGYDIMGIKY 167 (377)
Q Consensus 92 --~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~-~~~~~I~~~~l 167 (377)
..+..... +..+++ +++.+ +++.+. .....++..++
T Consensus 94 ~~~~~~~~~~~v~~v~~-s~d~~---------------------------------------~l~~~~~~~~~~~~v~~~ 133 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISW-DSESK---------------------------------------RIAAVGEGRERFGHVFLF 133 (311)
T ss_dssp EEEEEECSSSCEEEEEE-CTTSC---------------------------------------EEEEEECCSSCSEEEEET
T ss_pred cccccccccCccccccc-ccccc---------------------------------------cccccccccccccccccc
Confidence 22332222 444443 33222 233332 11212555566
Q ss_pred CCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 168 NKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
+.... ...+.. ...+..+++++.++.++++-...+.|...+........... ..-..+.++++++..
T Consensus 134 ~~~~~-----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~v~~~p~~ 201 (311)
T d1nr0a1 134 DTGTS-----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-------EHTKFVHSVRYNPDG 201 (311)
T ss_dssp TTCCB-----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-------CCSSCEEEEEECTTS
T ss_pred ccccc-----cccccccccccccccccccceeeecccccccccccccccccccccccc-------cccccccccccCccc
Confidence 54422 111222 34578899988777778876677888888887543333333 233457899999755
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-------CCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISGG-------VDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-------~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+ ++.+-...+.|.+.++............ .....+++++|.+.+|+.... ...|...++.
T Consensus 202 ~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~--Dg~v~iwd~~ 268 (311)
T d1nr0a1 202 S-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA--DKTIKIWNVA 268 (311)
T ss_dssp S-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET--TSEEEEEETT
T ss_pred c-ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC--CCeEEEEECC
Confidence 4 4445445577888887655433333211 123578999987666665542 3567666665
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.52 E-value=0.022 Score=51.09 Aligned_cols=194 Identities=14% Similarity=0.082 Sum_probs=112.1
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEEC----CC---CEEEEEEcCC--CcEEEEEcCCCCcEE
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA----AE---DYIYWVDIDH--GTISRTHRDGTGREN 221 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~----~~---~~ly~sd~~~--~~I~~~~~~G~~~~~ 221 (377)
.++-++... -|..++|+|... + . ...+++-.+|+-. .+ ..++.++... .+|.....++.....
T Consensus 42 lI~gTdK~~-Gl~vYdL~G~~l---~-~---~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 42 KLITTNKKS-GLAVYSLEGKML---H-S---YHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp EEEEEETTS-CCEEEETTCCEE---E-E---CCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred EEEEEcCcC-CEEEEcCCCcEE---E-e---cccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 344444433 399999988744 1 1 1334555554431 01 1345566543 355555554332211
Q ss_pred E-EeccccCCCCCCCCcceEEE--eccCCeEEE-EcCCCCEEEEEEc--CC--CeEEEEeeC--CCCCceeEEEcCCCCe
Q psy5792 222 I-IEYVETGDPTPVDQFTDIAV--DWIAQNIYW-SDPKENVIEVARL--TG--QYRYVLISG--GVDQPSALAVDPESGY 291 (377)
Q Consensus 222 i-~~~~~~~~~~~~~~p~~iav--D~~~~~lYw-td~~~~~I~~~~~--~g--~~~~~l~~~--~~~~P~~iavdp~~g~ 291 (377)
. +..........+..|+|+++ ++.++.+|. .....+++....+ ++ .....++.. .-.++.|+++|..++.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 1 11000111134557999998 777776653 3444567665544 33 333333331 2457899999999999
Q ss_pred EEEEecCCCCeEEEEecCC---CCeEEEEecC----CCCceEEEEeCC---CCEEEEEEeCCCCeEEEEEccCC
Q psy5792 292 LFWSESGKIPLIARAGLDG---KKQTILAQEI----IMPIKDITLDRK---NKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG---~~~~~l~~~~----~~~P~glalD~~---~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
||+++. ...|++..++. ...+.+.... ..-|-||||-.. ++.|..++. +.++....+..+.
T Consensus 194 LyisEE--~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ-G~n~f~vydr~~~ 264 (353)
T d1h6la_ 194 LYIAEE--DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ-GNSSYAIYERQGQ 264 (353)
T ss_dssp EEEEET--TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTT
T ss_pred EEEecC--ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC-CCCeEEEEecCCC
Confidence 999996 46899988763 3444443321 346999999543 468888888 8888877777654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.026 Score=49.37 Aligned_cols=262 Identities=10% Similarity=0.026 Sum_probs=145.5
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-----EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-----VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGS 89 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-----~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~ 89 (377)
+.+.++++++.+++|+-. ..+.|..-|+... ...............|++ .++...++-..++.|...+....
T Consensus 52 ~~V~~v~fs~~g~~latg--~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~ 129 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTG--GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SCCCEEEECSSSSEEEEE--CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CcEEEEEECCCCCEEEEE--ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence 367888999888777543 3678888887543 222221123334678888 33344444445677777773322
Q ss_pred c---eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 90 N---STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 90 ~---~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
. ...+..... ...+.+ +++ ..++++....+.|+..
T Consensus 130 ~~~~~~~~~~~~~~v~~~~~-~~~----------------------------------------~~~l~s~~~d~~i~~~ 168 (337)
T d1gxra_ 130 TPRIKAELTSSAPACYALAI-SPD----------------------------------------SKVCFSCCSDGNIAVW 168 (337)
T ss_dssp --EEEEEEECSSSCEEEEEE-CTT----------------------------------------SSEEEEEETTSCEEEE
T ss_pred cccccccccccccccccccc-ccc----------------------------------------cccccccccccccccc
Confidence 2 122221111 111111 221 1233333333358888
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
++..... ..........+..+++.+.+..++... ..+.|...++.......... .-..+..+++++.
T Consensus 169 ~~~~~~~----~~~~~~~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~~~~~~--------~~~~i~~l~~~~~ 235 (337)
T d1gxra_ 169 DLHNQTL----VRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHD--------FTSQIFSLGYCPT 235 (337)
T ss_dssp ETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECTT
T ss_pred ccccccc----ccccccccccccccccccccccccccc-ccccccccccccceeecccc--------cccceEEEEEccc
Confidence 7766532 111222344577899988777777766 45788888876432222222 2345788999976
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCce
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
+..|+ +-...+.|...+++......... ......++++.|.+.+|+-+.. ...|...++........... -..+.
T Consensus 236 ~~~l~-~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~v~~s~~g~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~-~~~v~ 310 (337)
T d1gxra_ 236 GEWLA-VGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVSTGK--DNLLNAWRTPYGASIFQSKE-SSSVL 310 (337)
T ss_dssp SSEEE-EEETTSCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEEC-SSCEE
T ss_pred ccccc-eeccccccccccccccccccccc-cccccceEEECCCCCEEEEEeC--CCeEEEEECCCCCEEEEccC-CCCEE
Confidence 55554 44455789999998776544332 3445789999986555554432 46677777654333222222 35667
Q ss_pred EEEEeCCCCEEEE
Q psy5792 326 DITLDRKNKRVYW 338 (377)
Q Consensus 326 glalD~~~~~LYw 338 (377)
.+++.+.++.|..
T Consensus 311 ~~~~s~d~~~l~t 323 (337)
T d1gxra_ 311 SCDISVDDKYIVT 323 (337)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCCCEEEE
Confidence 7888765555544
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.43 E-value=1.2e-05 Score=51.42 Aligned_cols=31 Identities=6% Similarity=-0.148 Sum_probs=25.8
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC------CCcCCC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD------FHAGIS 149 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~~~~ 149 (377)
|..+||+|+|+|++.++++. +.||+ +|.+.+
T Consensus 1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~ 40 (51)
T d1kigl_ 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTE 40 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECS
T ss_pred CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCC
Confidence 77899999999999999888 78886 676443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.034 Score=48.58 Aligned_cols=222 Identities=9% Similarity=0.064 Sum_probs=128.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEE-eCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVV-SMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~-~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.+++..+.+..|+ +-+..+.|...++... .+... ..........+++ .++.+.++-...+.|...+ .+++...
T Consensus 99 ~I~~v~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLI-VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp BEEEEEECTTSSEEE-EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cEEEEEEcCCCCEEE-Eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467888888776664 4445678888888665 22221 0133445566677 3444555555666787777 4444333
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
....... +..+.+ +++. ..++.+..+ +.|+..++....
T Consensus 178 ~~~~~~~~v~~l~~-s~~~---------------------------------------~~~~~~~~d-~~v~i~d~~~~~ 216 (337)
T d1gxra_ 178 QFQGHTDGASCIDI-SNDG---------------------------------------TKLWTGGLD-NTVRSWDLREGR 216 (337)
T ss_dssp EECCCSSCEEEEEE-CTTS---------------------------------------SEEEEEETT-SEEEEEETTTTE
T ss_pred cccccccccccccc-cccc---------------------------------------ccccccccc-ccccccccccce
Confidence 3322222 333332 1111 234444433 357777775542
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
. +........+.++++++.+..|+... ..+.|...+++........ ..-..+.++++.+.+ ++++
T Consensus 217 ~-----~~~~~~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~--------~~~~~i~~v~~s~~g-~~l~ 281 (337)
T d1gxra_ 217 Q-----LQQHDFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLH--------LHESCVLSLKFAYCG-KWFV 281 (337)
T ss_dssp E-----EEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEEC--------CCSSCEEEEEECTTS-SEEE
T ss_pred e-----ecccccccceEEEEEcccccccceec-ccccccccccccccccccc--------ccccccceEEECCCC-CEEE
Confidence 2 22223345678899998777777655 5678888888765433222 233457888998754 4555
Q ss_pred EcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 252 td~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+-...+.|...+........... ....+..++++|...+|..+.
T Consensus 282 s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 282 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEe
Confidence 65566889988887654433333 345678999998655665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.41 E-value=0.039 Score=50.41 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCC--------C-eEEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTG--------Q-YRYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--------~-~~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
+.|.|+.+++.+..+|.+....+.+.++++.- . .+.+++.. -.-.|..-+.|. +|..|-|-.- .+.|
T Consensus 275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfi-ds~v 352 (459)
T d1fwxa2 275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFL-DSQV 352 (459)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETT-TTEE
T ss_pred CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeec-cceE
Confidence 46999999999999999999999999999841 1 12223221 123589999997 7999999864 5888
Q ss_pred EEEecC-------CCCeEEEEec-C-CCCceEE------EEeCCCCEEEEEEeC-----------CCCeEEEEEccCCce
Q psy5792 304 ARAGLD-------GKKQTILAQE-I-IMPIKDI------TLDRKNKRVYWCYSV-----------GSNVLESMDYSGGSK 357 (377)
Q Consensus 304 ~r~~ld-------G~~~~~l~~~-~-~~~P~gl------alD~~~~~LYw~d~~-----------~~~~i~~~~~~G~~~ 357 (377)
.+-+++ |.....++.. . ..+|--+ +.+..++.|.....- ....-+-+++.|...
T Consensus 353 ~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m 432 (459)
T d1fwxa2 353 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 432 (459)
T ss_dssp EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCCCee
Confidence 888874 3333333332 1 2234333 335555666655420 123456788987655
Q ss_pred EEEEecCCCCCcc
Q psy5792 358 MQLKLSSNIKNAL 370 (377)
Q Consensus 358 ~~~~~~~~~~~p~ 370 (377)
+.+.....+++|+
T Consensus 433 ~l~~d~p~~~ePh 445 (459)
T d1fwxa2 433 VLVHDGPTFAEPH 445 (459)
T ss_dssp EEEEEEEESSCCC
T ss_pred EEEeccCCCCCCc
Confidence 5555555577774
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.41 E-value=0.027 Score=47.42 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=46.1
Q ss_pred CeEEEE-ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 290 GYLFWS-ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 290 g~lywt-d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
..+++. +......|+..+++|...+.|....-..+..++. .+++|+|... +.|+.++++++..+.+.
T Consensus 202 ~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~Sp--DG~~I~f~~~---~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 202 HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNT--DGRRILFSKG---GSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp TEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEE--SSSCEEEEET---TEEEEECTTTCCEEECC
T ss_pred cccceecccccccceEEEeCCCCceEEeecCCCcccccCcC--CCCEEEEEeC---CEEEEEECCCCCEEEec
Confidence 345554 4434678999999999988776543233334544 5678998554 57999999988777664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.40 E-value=0.012 Score=51.26 Aligned_cols=173 Identities=10% Similarity=0.020 Sum_probs=116.7
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC-CcEEEEEcCCCCcEEEEeccccC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH-GTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~-~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.+.++.+.. |+..++.+... ..+.....+..+++.+.++.|+++.... ..|+..+.++...+.+.
T Consensus 17 ~~a~~~~g~--v~v~d~~~~~~------~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~------ 82 (360)
T d1k32a3 17 LIAFVSRGQ--AFIQDVSGTYV------LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE------ 82 (360)
T ss_dssp CEEEEETTE--EEEECTTSSBE------EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC------
T ss_pred EEEEEECCe--EEEEECCCCcE------EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee------
Confidence 455555544 88888876532 2334566789999999888888765444 46778888765544433
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC--------CC
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK--------IP 301 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~--------~~ 301 (377)
.....+.++++.+.+..|..+ ...+.+...++++.....+..........+++.|.+.+|.++.... ..
T Consensus 83 --~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 83 --ENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp --CCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred --CCCceEEeeeeccccccccee-ccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence 345568899999866666554 4457899999988777666665566678999999888888875321 22
Q ss_pred eEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 302 LIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 302 ~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
.+...++.+.....+... .....++++.+.+++|+++..
T Consensus 160 ~~~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 160 AIHVYDMEGRKIFAATTE-NSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp EEEEEETTTTEEEECSCS-SSBEEEEEECTTSCEEEEEES
T ss_pred ceeeeccccCceeeeccc-ccccccccccCCCCEEEEEeC
Confidence 455566665544443332 345667888888888887654
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=1.3e-05 Score=50.89 Aligned_cols=26 Identities=4% Similarity=-0.172 Sum_probs=23.0
Q ss_pred CcCCCCCCceeccccCCCccc---cCCcC
Q psy5792 118 KYNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 118 ~C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
||..+||+|+|+|+++++++. +.||+
T Consensus 1 ~C~~~NGgC~~~C~~~~g~~~C~C~~Gy~ 29 (50)
T d1autl2 1 NCSLDNGGCTHYCLEEVGWRRCSCAPGYK 29 (50)
T ss_dssp SSSSGGGGCSSEEEECSSSEEEECCTTEE
T ss_pred CCCCCCCCcccEeecCCCCeEEECCCCCE
Confidence 378899999999999999988 78886
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=1.1e-05 Score=51.48 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=26.0
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC------CCcCCC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD------FHAGIS 149 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~------~C~~~~ 149 (377)
|..+||+|+|+|++.++++. +.||+ +|.+..
T Consensus 3 C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~ 42 (51)
T d2p3ua1 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42 (51)
T ss_dssp GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred cCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCC
Confidence 88899999999999999988 88886 676433
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=1.6e-05 Score=51.18 Aligned_cols=25 Identities=4% Similarity=-0.069 Sum_probs=21.1
Q ss_pred cCCCCCCceeccccCCCccc----cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL----AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~----~~G~~ 143 (377)
|..+||+|+|+|++.+++.+ +.||.
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~ 30 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYS 30 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEE
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCE
Confidence 77889999999999988654 77876
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.19 E-value=0.011 Score=54.28 Aligned_cols=147 Identities=13% Similarity=0.054 Sum_probs=97.3
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC-------------------
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE------------------- 256 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~------------------- 256 (377)
+++||+.|..+.+|.|++++.-....++.. .....+.|+.+....+..|+.....
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~i------Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEI------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEEC------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEec------CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 889999999999999999996554445541 4556799998865556666664322
Q ss_pred CEEEEEEcCCCeEE--EEeeCCCCCceeEEEcCCCCeEEEEecCCC----------------------------------
Q psy5792 257 NVIEVARLTGQYRY--VLISGGVDQPSALAVDPESGYLFWSESGKI---------------------------------- 300 (377)
Q Consensus 257 ~~I~~~~~~g~~~~--~l~~~~~~~P~~iavdp~~g~lywtd~g~~---------------------------------- 300 (377)
+.+.+++.+..... +.+. ..|..+++++..+++|+|...++
T Consensus 173 ~~~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ 249 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 249 (459)
T ss_dssp EEEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred eEEEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence 23455666543322 2332 36889999999999999975321
Q ss_pred --CeEEEEecC---CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 301 --PLIARAGLD---GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 301 --~~I~r~~ld---G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+.+..++.. +......+.. -..|.|+.+++.++.+|.+.. ....+..+++.
T Consensus 250 eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGK-Ls~tVSViD~~ 305 (459)
T d1fwxa2 250 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK-LSPTVTVLDVT 305 (459)
T ss_dssp EETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECT-TSSBEEEEEGG
T ss_pred EeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCC-cCCcEEEEEeh
Confidence 111111111 1122222222 257999999999999999999 88999999874
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=2.8e-05 Score=50.78 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=20.9
Q ss_pred cCCCCCCceeccccCCCc-cc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKV-SL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~-~~---~~G~~ 143 (377)
|..+||+|+|+|++.++. +. +.||.
T Consensus 3 C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~ 31 (57)
T d1rfnb_ 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYR 31 (57)
T ss_dssp TTGGGGGCSSEEEECTTSCEEEECCTTEE
T ss_pred cCCCCCCcccEeeeCCCCCeEeECCCCCE
Confidence 888999999999999875 44 77876
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.085 Score=44.02 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=107.0
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEE
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ia 241 (377)
+..++.++... ..+ ...........+.+.+..+.+.....+.................. ........-.
T Consensus 65 ~~~~~~~~~~~---~~~--~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 133 (269)
T d2hqsa1 65 LVIQTLANGAV---RQV--ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT------DGRSNNTEPT 133 (269)
T ss_dssp EEEEETTTCCE---EEE--ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC------CCSSCEEEEE
T ss_pred eeeeecccCce---eEE--eeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee------eccccccccc
Confidence 55556655533 111 233445667777887777776655443322222221111121110 1112222233
Q ss_pred EeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 242 VDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 242 vD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
..+..+.++++... ...|...++++.....+... .......++.|....+++.... ....|...+.++...+.+..
T Consensus 134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 212 (269)
T d2hqsa1 134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS 212 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC
T ss_pred cccccccceecccccCCceEeeeecccccceeeecc-cccccccccccccceeEEEeecCCceeeeEeecccccceEeec
Confidence 44445556666443 34789999988766555443 3445566788888888887653 24577777877776655443
Q ss_pred cCCCCceEEEEeCCCCEEEEEEe-CCCCeEEEEEccCCceEEEEe
Q psy5792 319 EIIMPIKDITLDRKNKRVYWCYS-VGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 319 ~~~~~P~glalD~~~~~LYw~d~-~~~~~i~~~~~~G~~~~~~~~ 362 (377)
. ..-....+.+.+++|+|+.. +....|+.++++|+..+++..
T Consensus 213 ~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~ 255 (269)
T d2hqsa1 213 T--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 255 (269)
T ss_dssp S--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred C--ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence 3 22235678888899977654 134678999999987766643
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00011 Score=46.43 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=15.0
Q ss_pred cCCCCCCceeccccCCC
Q psy5792 119 YNKNESKVQQVLGPLSK 135 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~ 135 (377)
|..+||+|+|+|++.|.
T Consensus 7 C~~~NGGC~h~Cl~~p~ 23 (50)
T d1ijqa2 7 TTLSNGGCQYLCLPAPQ 23 (50)
T ss_dssp SSSGGGGCSSEEEECCC
T ss_pred cCCCCCCCcCccCCCcC
Confidence 77899999999997775
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00018 Score=43.63 Aligned_cols=25 Identities=0% Similarity=-0.117 Sum_probs=21.5
Q ss_pred cCC-CCCCceeccccCCCccc---cCCcC
Q psy5792 119 YNK-NESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 119 C~~-~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
|.. ++++|+|+|++.+++|. +.||.
T Consensus 3 C~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~ 31 (42)
T d1nzia2 3 CTDFVDVPCSHFCNNFIGGYFCSCPPEYF 31 (42)
T ss_dssp TTC-CCCCSSSEEEEETTEEEEECCTTCE
T ss_pred CCCCCCcCCCCEeecCCCCEEEeCCCCCE
Confidence 764 57899999999999999 78876
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00031 Score=42.43 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=21.4
Q ss_pred CC-cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 117 IK-YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+| |. .+++|+|+|.+++++|. +.||+
T Consensus 1 idEC~-~~~~C~~~C~n~~Gsy~C~C~~Gy~ 30 (41)
T d1i0ua2 1 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQ 30 (41)
T ss_dssp CCTTT-TTTSCSSCEECSSSCCEECCCTTEE
T ss_pred CccCC-CCCCCCCEeECCCCCEEeECCCCCe
Confidence 36 86 46899999999999998 77765
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.00058 Score=42.08 Aligned_cols=27 Identities=7% Similarity=-0.188 Sum_probs=22.0
Q ss_pred CC-cCCCCC---CceeccccCCCccc---cCCcC
Q psy5792 117 IK-YNKNES---KVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~~g---~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+| |...++ +|+|+|++++++|. +.||+
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~ 34 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 34 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEE
T ss_pred CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCe
Confidence 36 777655 79999999999998 77875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.99 E-value=0.39 Score=40.97 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceE
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
.|+..++++... .........+.++++.+.+.+|.... ..+.++..++++.....+.. .......++
T Consensus 67 ~v~v~d~~~~~~-----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 133 (360)
T d1k32a3 67 FLGIYDYRTGKA-----EKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTVIER-------SREAMITDF 133 (360)
T ss_dssp EEEEEETTTCCE-----EECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE-------CSSSCCCCE
T ss_pred EEEEEECCCCcE-----EEeeCCCceEEeeeecccccccceec-cccccccccccccceeeeee-------cccccccch
Confidence 356666665533 11223455678899999777777665 56788888998766555555 344557789
Q ss_pred EEeccCCeEEEEcCC---------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 241 AVDWIAQNIYWSDPK---------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 241 avD~~~~~lYwtd~~---------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
++.+.++.|.++... .+.+.+.++.+.....+... ......+++.|...+|++..
T Consensus 134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE-NSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS-SSBEEEEEECTTSCEEEEEE
T ss_pred hhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc-ccccccccccCCCCEEEEEe
Confidence 998878888776421 23577888887765555443 44567788998878888764
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.90 E-value=0.00056 Score=42.15 Aligned_cols=26 Identities=0% Similarity=-0.245 Sum_probs=18.7
Q ss_pred C-cCCCCC---CceeccccCCCccc---cCCcC
Q psy5792 118 K-YNKNES---KVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 118 ~-C~~~~g---~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+ |...++ +|+|+|++.+++|+ ++||+
T Consensus 2 dEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~ 34 (45)
T d1nt0a3 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYI 34 (45)
T ss_dssp CTTC-------CCSSEEEEETTEEEEECCTTEE
T ss_pred cCCccCCCCcCCCCCEeecCCCCEEEeCCCCCE
Confidence 5 766554 49999999999998 77875
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.78 E-value=0.55 Score=41.01 Aligned_cols=228 Identities=10% Similarity=-0.010 Sum_probs=120.6
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+++++.++++..|.. -+..+.|...++++. .+.+.. ..+......|++. ++....+-..++.|...+ .+++..
T Consensus 8 ~pIt~~~~s~dg~~la~-~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAI-CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SCCCEEEECTTSSEEEE-ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEEE-EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 55789999987766643 456678999998876 333321 1344557888883 334444434456777777 334333
Q ss_pred EEEe--cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 92 TVLR--NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 92 ~~~~--~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
..+. .... +..+.. +|+. ..++.+..+ +.|+...++
T Consensus 87 ~~~~~~~~~~~v~~i~~-~p~~---------------------------------------~~l~~~s~d-~~i~i~~~~ 125 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRW-APNE---------------------------------------KKFAVGSGS-RVISICYFE 125 (371)
T ss_dssp EEEECCCCSSCEEEEEE-CTTS---------------------------------------SEEEEEETT-SSEEEEEEE
T ss_pred ccccccccccccccccc-cccc---------------------------------------ccceeeccc-Ccceeeeee
Confidence 3322 1111 344432 2221 134443332 246665555
Q ss_pred CCCceeeEEEEe-cC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc----------------EEEEeccccCC
Q psy5792 169 KNESKVTQVLGP-LS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR----------------ENIIEYVETGD 230 (377)
Q Consensus 169 ~~~~~~~~~~~~-~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~----------------~~i~~~~~~~~ 230 (377)
.... ...... .. ....+..+++++.+..|. +-..++.|...+...... +.+.. .
T Consensus 126 ~~~~--~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 197 (371)
T d1k8kc_ 126 QEND--WWVCKHIKKPIRSTVLSLDWHPNSVLLA-AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-----S 197 (371)
T ss_dssp TTTT--EEEEEEECTTCCSCEEEEEECTTSSEEE-EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-----C
T ss_pred cccc--ccccccccccccccccccccccccccee-ccccCcEEEEEeeccCccccccccccccccccceeeeee-----c
Confidence 4433 111111 12 234578899988666554 433566777666543211 11111 0
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
......+.++++.+.+..|+. -...+.|...++........+........+++..|. +.+..+
T Consensus 198 ~~~~~~v~~~~~s~~g~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d-~~~la~ 260 (371)
T d1k8kc_ 198 SSSCGWVHGVCFSANGSRVAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITE-SSLVAA 260 (371)
T ss_dssp CCCSSCEEEEEECSSSSEEEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEET-TEEEEE
T ss_pred cCccCcEEEEEeecccccccc-cccCCcceEEeeecccceeeeecccccceeeeecCC-CCEEEE
Confidence 012234678899876555544 445678999988765443333332333478888874 444443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.74 E-value=0.45 Score=39.71 Aligned_cols=240 Identities=11% Similarity=0.032 Sum_probs=128.2
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecC-CC-ceeEEeeecCCCCcccCCCcCCCCCCceeccc
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNN-AG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLG 131 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~-~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~ 131 (377)
++......|++ .++...+|-..++.|...+ .+|+....+... .. +.++.+ .++.
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~-~~~g--------------------- 67 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKG--------------------- 67 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE-CTTS---------------------
T ss_pred CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEe-eccc---------------------
Confidence 55566788888 3445555555667888888 566655544321 11 334433 2211
Q ss_pred cCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 132 PLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 132 ~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
.++.+..+ +.++..+......... ..........+..+++.+.+..+.... .+.+..
T Consensus 68 -------------------~~~~~~~d-~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~~~~~~--~~~i~~ 124 (299)
T d1nr0a2 68 -------------------DLFTVSWD-DHLKVVPAGGSGVDSS-KAVANKLSSQPLGLAVSADGDIAVAAC--YKHIAI 124 (299)
T ss_dssp -------------------CEEEEETT-TEEEEECSSSSSSCTT-SCCEEECSSCEEEEEECTTSSCEEEEE--SSEEEE
T ss_pred -------------------eeecccce-eeEEEeccCCcccccc-ccccccccccccccccccccccccccc--cccccc
Confidence 13333322 2477666654322000 000111234567778777555555543 245554
Q ss_pred EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCCCCceeEEEcCCCC
Q psy5792 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVDPESG 290 (377)
Q Consensus 212 ~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~P~~iavdp~~g 290 (377)
.+.. ....+. ....+..+++.+... ++.+-...+.|...++.+.....+ ....-..+..++++|...
T Consensus 125 ~~~~--~~~~~~---------~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (299)
T d1nr0a2 125 YSHG--KLTEVP---------ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 192 (299)
T ss_dssp EETT--EEEEEE---------CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccc--cccccc---------ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 4432 111111 123467788886544 444555567899999887654332 222345679999999777
Q ss_pred eEEEEecCCCCeEEEEecCCCCeEEEEec---CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 291 YLFWSESGKIPLIARAGLDGKKQTILAQE---IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ldG~~~~~l~~~---~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
+|+.+.. ...|...++........... .-.....+++.+.+..|+.. . ..+.|...++....
T Consensus 193 ~l~~~~~--d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg-s-~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 193 FLVATDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-S-LDNSVIVWNMNKPS 257 (299)
T ss_dssp EEEEEET--TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE-E-TTSCEEEEETTCTT
T ss_pred ccccccc--ccccccccccccccccccccccccccccccccccccccceEEE-c-CCCEEEEEECCCCC
Confidence 7777664 46777777654332211111 12345778888665555544 4 46778777876443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.46 Score=39.16 Aligned_cols=264 Identities=8% Similarity=0.017 Sum_probs=131.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.+++.++.++.| .+-+..+.|..-|++.. ..++. ........+++ .++.+..+......+...+ ......
T Consensus 18 ~~I~~l~~sp~~~~l-~s~s~Dg~i~iWd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVM-VSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp SCEEEEEECSSSSEE-EEEESSSCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred CCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCEEEEEe--CCCCcEEEEeeecccccccccccccccccccccccccc
Confidence 367889998876554 45556788998888655 55552 34455677777 3334444433444444444 222221
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... ...+. +.++ ...++.... .+.++..++...
T Consensus 95 ~~~~~~~~~~~~~~-~~~~---------------------------------------~~~~~~~~~-d~~~~~~~~~~~ 133 (317)
T d1vyhc1 95 RTMHGHDHNVSSVS-IMPN---------------------------------------GDHIVSASR-DKTIKMWEVQTG 133 (317)
T ss_dssp ECCCCCSSCEEEEE-ECSS---------------------------------------SSEEEEEET-TSEEEEEETTTC
T ss_pred cccccccccceeee-ccCC---------------------------------------CceEEeecc-CcceeEeecccc
Confidence 11111111 11111 1111 123333332 234666666554
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec------
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW------ 244 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~------ 244 (377)
.. ...+ .........+++++.+..|.... ..+.|...+........... ........+++.+
T Consensus 134 ~~--~~~~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~ 201 (317)
T d1vyhc1 134 YC--VKTF--TGHREWVRMVRPNQDGTLIASCS-NDQTVRVWVVATKECKAELR-------EHRHVVECISWAPESSYSS 201 (317)
T ss_dssp CE--EEEE--ECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECCSCGGGG
T ss_pred ee--eeEE--ccCCCcceeeecccCCCEEEEEe-CCCeEEEEeeccceeeEEEe-------cCCCCceEEEEeeccccce
Confidence 32 1111 12234467778877555554443 45677766665332222221 1111122222221
Q ss_pred -------------cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-
Q psy5792 245 -------------IAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG- 310 (377)
Q Consensus 245 -------------~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG- 310 (377)
..+.+..+-...+.|...++.......-+........++++.|.+.+|+.+.. .+.|...++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~ 279 (317)
T d1vyhc1 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD--DKTLRVWDYKNK 279 (317)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET--TTEEEEECCTTS
T ss_pred eeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC--CCeEEEEECCCC
Confidence 12334445455567777777655433333333455689999997666666553 46788777754
Q ss_pred CCeEEEEecCCCCceEEEEeCCCCEEEE
Q psy5792 311 KKQTILAQEIIMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 311 ~~~~~l~~~~~~~P~glalD~~~~~LYw 338 (377)
....++-.. -...+.+++.+.+..|+-
T Consensus 280 ~~~~~~~~h-~~~V~~~~~s~~~~~l~s 306 (317)
T d1vyhc1 280 RCMKTLNAH-EHFVTSLDFHKTAPYVVT 306 (317)
T ss_dssp CCCEEEECC-SSCEEEEEECSSSSCEEE
T ss_pred cEEEEEcCC-CCCEEEEEEcCCCCEEEE
Confidence 334443321 245677887655444443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.48 E-value=0.56 Score=39.05 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=123.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCce--
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNS-- 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~-- 91 (377)
..+.++++.+.+..| ++-+..+.|..-|++.. ..............++++ .++.++.+. .++.+...+..+...
T Consensus 13 ~~V~~l~~s~dg~~l-~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~-~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 13 KAITALSSSADGKTL-FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS-WDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp SCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE-TTTEEEEECSSSSSSCT
T ss_pred CCcEEEEECCCCCEE-EEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccc-ceeeEEEeccCCccccc
Confidence 357788998876655 44456688998898765 333321223345677888 444555554 345666666322211
Q ss_pred --EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 92 --TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 92 --~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
........ +.++.+ .++ ..+++.+.... +...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~-s~~---------------------------------------g~~~~~~~~~~--i~~~~~~ 128 (299)
T d1nr0a2 91 SKAVANKLSSQPLGLAV-SAD---------------------------------------GDIAVAACYKH--IAIYSHG 128 (299)
T ss_dssp TSCCEEECSSCEEEEEE-CTT---------------------------------------SSCEEEEESSE--EEEEETT
T ss_pred ccccccccccccccccc-ccc---------------------------------------ccccccccccc--ccccccc
Confidence 00000001 222222 111 01233333333 5444321
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.. ........+..+++.+.+..|+... ..+.|...++.+.....+... ..-..+.++++++....
T Consensus 129 ~~--------~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 129 KL--------TEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTI------VHPAEITSVAFSNNGAF 193 (299)
T ss_dssp EE--------EEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEE------ECSSCEEEEEECTTSSE
T ss_pred cc--------ccccccccccccccccccccccccc-ccccccccccccccccccccc------ccccccccccccccccc
Confidence 10 1111223466778887666666554 567888888765433322210 12345789999975555
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEee---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLIS---GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
|+ +-...++|...++.......... .......+++++|.+.+|..... .+.|...++...
T Consensus 194 l~-~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~--dg~i~iwd~~~~ 256 (299)
T d1nr0a2 194 LV-ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL--DNSVIVWNMNKP 256 (299)
T ss_dssp EE-EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTCT
T ss_pred cc-ccccccccccccccccccccccccccccccccccccccccccceEEEcC--CCEEEEEECCCC
Confidence 54 44445678888876543322111 12344688999986666555543 467777777643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.67 Score=39.60 Aligned_cols=248 Identities=10% Similarity=-0.038 Sum_probs=124.8
Q ss_pred cCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCC-c---EEEEEeCCC-CCceEEEEEE---CCeEEEEcCCCCceE
Q psy5792 11 RNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEV-K---VAKVVSMPD-AAQVVAAVFY---KGRIIYSDANDGNIR 82 (377)
Q Consensus 11 ~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG-~---~~~i~~~~~-~~~p~~lav~---~~~ly~td~~~~~I~ 82 (377)
+......|..++.++.+++|-++......|+..+... . ..++. .+ ......+++. ++++..+-..++.|.
T Consensus 13 p~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~--gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe--CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 3334568899999999999877655444444444322 2 33332 22 3346777773 445556655667776
Q ss_pred EEc-CCCCceEEEe--------cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEE
Q psy5792 83 SIN-LDGSNSTVLR--------NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFI 152 (377)
Q Consensus 83 ~~~-~~g~~~~~~~--------~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l 152 (377)
..+ ..+.....+. ...+ ...+.. +++. ..+
T Consensus 91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~~~---------------------------------------~~l 130 (325)
T d1pgua1 91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DFEG---------------------------------------RRL 130 (325)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE-CTTS---------------------------------------SEE
T ss_pred EeeecCCcceeeeecccccccccccCcEEEEEE-CCCC---------------------------------------Ccc
Confidence 666 3332211111 0001 111111 1111 123
Q ss_pred EE-EeCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 153 LF-SVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 153 ~~-s~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
+. +....+.+.....+.... +..+.. .....++++.+.+..+..+-...+.|...+........-.. ..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~----~~ 201 (325)
T d1pgua1 131 CVVGEGRDNFGVFISWDSGNS-----LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR----TH 201 (325)
T ss_dssp EEEECCSSCSEEEEETTTCCE-----EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC----SS
T ss_pred ceeeccccceEEEEeeccccc-----ceeeeecccccccccccccccceEEEeecccccccccccccccceecc----cc
Confidence 33 222222355566554322 222232 34567888988777777766667777777664222111111 00
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc--CCCCeEEEEecCCCCeEEEEec
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD--PESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd--p~~g~lywtd~g~~~~I~r~~l 308 (377)
......+.++++.+..+.++.+-...+.|...++........+........++... ...|.++.+-. ....|...++
T Consensus 202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~ 280 (325)
T d1pgua1 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV 280 (325)
T ss_dssp SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEEC
Confidence 01223377899988778888887777889998876544333333222222333322 12343344432 2356666666
Q ss_pred CC
Q psy5792 309 DG 310 (377)
Q Consensus 309 dG 310 (377)
..
T Consensus 281 ~~ 282 (325)
T d1pgua1 281 TT 282 (325)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0018 Score=38.45 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=21.7
Q ss_pred CC-cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 117 IK-YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
++ |+. +++|+|.|+|++++|. +.||.
T Consensus 2 idEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~ 31 (40)
T d1dx5i3 2 IDECEN-GGFCSGVCHNLPGTFECICGPDSA 31 (40)
T ss_dssp CCHHHH-CSSCSSEEEECSSSEEEEECSSSS
T ss_pred ccccCC-CcCccCEeeCCCCCeEeECCCCCe
Confidence 56 765 4899999999999998 77775
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0022 Score=38.91 Aligned_cols=28 Identities=0% Similarity=-0.058 Sum_probs=24.2
Q ss_pred CCC-cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 116 GIK-YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
++| |+..+..|+|.|++++++|. +.||+
T Consensus 2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~ 33 (43)
T d1uzka1 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFE 33 (43)
T ss_dssp CCCGGGSTTSSBTSEEEEETTEEEEECCTTCE
T ss_pred CccccCCCCcCcCCEeECCCCCEEEecCCCCE
Confidence 467 98888889999999999998 77875
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0096 Score=35.91 Aligned_cols=29 Identities=0% Similarity=-0.235 Sum_probs=24.8
Q ss_pred cCCC-cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 115 MGIK-YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 115 ~~~~-C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
.++| |+.++..|.|.|+|++|+|. +.||+
T Consensus 3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~ 35 (43)
T d1emoa1 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI 35 (43)
T ss_dssp CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEE
T ss_pred cceeccCCcCCCCCCEeECCCCCeEeECCCCcc
Confidence 4678 98888889999999999998 67764
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.0037 Score=37.64 Aligned_cols=27 Identities=7% Similarity=-0.045 Sum_probs=23.7
Q ss_pred CC-cCCCCCCcee-ccccCCCccc---cCCcC
Q psy5792 117 IK-YNKNESKVQQ-VLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~~g~Cs~-~C~~~~~~~~---~~G~~ 143 (377)
+| |..+++.|+| .|+|++++|. +.||+
T Consensus 2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~ 33 (42)
T d1lmja2 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ 33 (42)
T ss_dssp CCHHHHCSSTTTTSEEEEETTEEEEESCTTSC
T ss_pred ccccCCCCCCCCCCEeECCCCCeEEeCCCCCe
Confidence 57 8888899988 9999999999 78886
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.0077 Score=38.20 Aligned_cols=21 Identities=5% Similarity=0.009 Sum_probs=18.1
Q ss_pred CCCceeccccCCCccc---cCCcC
Q psy5792 123 ESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 123 ~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
+..|+|+|+|++|+|. +.||+
T Consensus 19 ~~~c~~~C~Nt~GsY~C~C~~Gy~ 42 (53)
T d1apqa_ 19 QPQCQHLCHNYVGGYFCSCRPGYE 42 (53)
T ss_dssp SCTTSSEEEEETTEEEEECSTTCE
T ss_pred CCCccCEeEcCCCCeEeECCCCCe
Confidence 4568999999999999 88885
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.0041 Score=37.65 Aligned_cols=28 Identities=7% Similarity=-0.244 Sum_probs=23.8
Q ss_pred CCC-cCCCCCCce-eccccCCCccc---cCCcC
Q psy5792 116 GIK-YNKNESKVQ-QVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 116 ~~~-C~~~~g~Cs-~~C~~~~~~~~---~~G~~ 143 (377)
++| |...++.|. |.|+|++|+|. +.||+
T Consensus 2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~ 34 (43)
T d1uzka2 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYY 34 (43)
T ss_dssp ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCC
T ss_pred CcccccCCCCCcCCCEEECCCCCeEeECCCCCe
Confidence 467 888888886 79999999999 78876
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.31 E-value=2.2 Score=36.77 Aligned_cols=168 Identities=7% Similarity=-0.041 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
+.|+..+++.... .....+.. ...+..+++++.++.++... ..+.|.....+............. ..-..+.
T Consensus 73 ~~i~vWd~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~---~~~~~v~ 145 (371)
T d1k8kc_ 73 RNAYVWTLKGRTW---KPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKK---PIRSTVL 145 (371)
T ss_dssp SCEEEEEEETTEE---EEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECT---TCCSCEE
T ss_pred CeEEEEeeccccc---ccccccccccccccccccccccccceeec-ccCcceeeeeeccccccccccccc---ccccccc
Confidence 3477777665432 12222222 34588999999777777665 456666666554333222210000 1123467
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeE----------------EEEe--eCCCCCceeEEEcCCCCeEEEEecCCC
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYR----------------YVLI--SGGVDQPSALAVDPESGYLFWSESGKI 300 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~----------------~~l~--~~~~~~P~~iavdp~~g~lywtd~g~~ 300 (377)
++++++.+ .++.+-...+.|.+.++..... ..+. ........+++++|...+|..... .
T Consensus 146 ~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~--d 222 (371)
T d1k8kc_ 146 SLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH--D 222 (371)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--T
T ss_pred cccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--C
Confidence 88888744 4445555556777776643210 1111 122344688999997777766543 4
Q ss_pred CeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEE
Q psy5792 301 PLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 301 ~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw 338 (377)
..|...++........+...-.....+++.+. +++..
T Consensus 223 ~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d-~~~la 259 (371)
T d1k8kc_ 223 STVCLADADKKMAVATLASETLPLLAVTFITE-SSLVA 259 (371)
T ss_dssp TEEEEEEGGGTTEEEEEECSSCCEEEEEEEET-TEEEE
T ss_pred CcceEEeeecccceeeeecccccceeeeecCC-CCEEE
Confidence 67777777654433323322233466777643 44443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.49 E-value=2.8 Score=35.76 Aligned_cols=281 Identities=10% Similarity=0.042 Sum_probs=133.9
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeC----------------CCCCceEEEEE-ECCeEEEEcC
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSM----------------PDAAQVVAAVF-YKGRIIYSDA 76 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~----------------~~~~~p~~lav-~~~~ly~td~ 76 (377)
+.+.++++++++..|.- ...+.|..-++... ..++... .......+|++ .++.+.++-.
T Consensus 63 ~~V~~l~fs~dg~~las--g~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLAT--GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SCCCEEEECTTSSEEEE--ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CcEEEEEECCCCCEEEE--EeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 46788999987766633 34678888887544 4443200 01122455666 3334444444
Q ss_pred CCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 77 NDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 77 ~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
.++.|...+ ..++.......... +..+.. .+. ...++.
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~-~~~---------------------------------------~~~~~~ 180 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDY-FPS---------------------------------------GDKLVS 180 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEE-CTT---------------------------------------SSEEEE
T ss_pred ccccccccccccccccccccccccccccccc-ccc---------------------------------------cccccc
Confidence 556666666 44443333322111 222222 111 112333
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
+.. .+.++..+...... ............+.+.+.++.++.+-...+.|...+.....................
T Consensus 181 ~~~-~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~ 254 (388)
T d1erja_ 181 GSG-DRTVRIWDLRTGQC-----SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254 (388)
T ss_dssp EET-TSEEEEEETTTTEE-----EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred ccc-ceeeeeeecccccc-----ccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC
Confidence 332 23466666654422 222223344556666665666666555667788777763332211110000000112
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE------------EEeeCCCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY------------VLISGGVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~------------~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..+..|++.+.+. +..+-...+.|...++...... ............+++.|...+|+.... ...
T Consensus 255 ~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~--dg~ 331 (388)
T d1erja_ 255 DSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK--DRG 331 (388)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET--TSE
T ss_pred CCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC--CCE
Confidence 3467888887544 4455555678888777543211 111112344688999986666665553 467
Q ss_pred EEEEecCCCCeEEEEecCCCCceEEEEeC-----CCCEEEEEEeCCCCeEE
Q psy5792 303 IARAGLDGKKQTILAQEIIMPIKDITLDR-----KNKRVYWCYSVGSNVLE 348 (377)
Q Consensus 303 I~r~~ldG~~~~~l~~~~~~~P~glalD~-----~~~~LYw~d~~~~~~i~ 348 (377)
|...++.-......+...-.....++.-. .++.+..+-. ..++|.
T Consensus 332 i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s-~Dg~I~ 381 (388)
T d1erja_ 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCKAR 381 (388)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE-TTSEEE
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe-CCCEEE
Confidence 77777653333222222123344554421 1344555544 444443
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.016 Score=35.09 Aligned_cols=28 Identities=4% Similarity=-0.186 Sum_probs=23.9
Q ss_pred CCC-cCCCCCCcee-ccccCCCccc---cCCcC
Q psy5792 116 GIK-YNKNESKVQQ-VLGPLSKVSL---AAKVD 143 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~-~C~~~~~~~~---~~G~~ 143 (377)
++| |...+..|+| .|+|++|+|. +.||+
T Consensus 2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~ 34 (44)
T d1lmja1 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYE 34 (44)
T ss_dssp CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEE
T ss_pred cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCc
Confidence 467 9988889987 8999999998 77775
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.99 E-value=3.5 Score=33.94 Aligned_cols=139 Identities=4% Similarity=-0.094 Sum_probs=78.9
Q ss_pred EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
....... ...++.+-...+.|...++.......... ..-..+.+|++.+. ++++.+-...+.|...++...
T Consensus 188 ~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-------~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~~~~~ 258 (340)
T d1tbga_ 188 MSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFT-------GHESDINAICFFPN-GNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEC-------CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTT
T ss_pred eeecccc-ccceeEEeecCceEEEEECCCCcEEEEEe-------CCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeeccc
Confidence 3333333 44455555556777777765333222222 22345788999874 455566556678999998876
Q ss_pred eEEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEE
Q psy5792 268 YRYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVY 337 (377)
Q Consensus 268 ~~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LY 337 (377)
........ .......++++|...+|+.... .+.|...++........+...-.....+++.+.+..|+
T Consensus 259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~ 328 (340)
T d1tbga_ 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD--DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECSSSCEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred ccccccccccccCceEEEEECCCCCEEEEEEC--CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence 65443332 2334578999986666665543 46777777654333333332124457777765444443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.09 E-value=4.2 Score=33.39 Aligned_cols=118 Identities=7% Similarity=0.035 Sum_probs=70.2
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEE
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~ 317 (377)
..+... ..+.++.+-...+.|...++........+........+++++|...+|+.+.. ...|...++.........
T Consensus 188 ~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~--d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 188 MSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD--DATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEE
T ss_pred eeeccc-cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEeeccccccccc
Confidence 334444 35566677666778888888765544334434455789999986555555442 467777777755444333
Q ss_pred ecC--CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 318 QEI--IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 318 ~~~--~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
... ......+++++.+..| .+-. ..+.|...++..+.....
T Consensus 265 ~~~~~~~~i~~~~~s~~~~~l-~~g~-~dg~i~iwd~~~~~~~~~ 307 (340)
T d1tbga_ 265 SHDNIICGITSVSFSKSGRLL-LAGY-DDFNCNVWDALKADRAGV 307 (340)
T ss_dssp CCTTCCSCEEEEEECSSSCEE-EEEE-TTSCEEEEETTTCCEEEE
T ss_pred ccccccCceEEEEECCCCCEE-EEEE-CCCEEEEEECCCCcEEEE
Confidence 321 2335678887654444 4444 567787777764444333
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=86.07 E-value=8.6 Score=33.68 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=91.6
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCC-eEEEEcCC-----C
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQ-NIYWSDPK-----E 256 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~-~lYwtd~~-----~ 256 (377)
...++.+|++|+.+..+.++-...+.|+|..=.|..-+.+... ............+||+|+.+. .||+.-.. .
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~-~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDF-IEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTT-CCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCC-CCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 4456788899887654444444556788766444444443220 000001122367899998764 46654321 2
Q ss_pred CEEEEEEcCCCeEEEEeeC--------CCCCceeEEEcCCCC-eEEEEecCCCCeEEEEecCCCCeEEEEec--C---CC
Q psy5792 257 NVIEVARLTGQYRYVLISG--------GVDQPSALAVDPESG-YLFWSESGKIPLIARAGLDGKKQTILAQE--I---IM 322 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~--------~~~~P~~iavdp~~g-~lywtd~g~~~~I~r~~ldG~~~~~l~~~--~---~~ 322 (377)
..|++..=.|+.=+.+-.. .......|+|||.+. .||.+.. ...|+|..=.|..=+.+... . ..
T Consensus 89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~--~~gl~~S~D~G~tW~~~~~~~~~~~~~~ 166 (427)
T d2ebsa1 89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR--TEGIWKSSDRAKTWTNVTSIPDAFTNGI 166 (427)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS--SSCEEEESSTTSSCEECTTSSCCCCSSS
T ss_pred ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc--ccceeeecCCCceeeecccCcccccCCc
Confidence 4577666556543333221 122345799999865 4555432 35688755444432222111 0 11
Q ss_pred CceEEEEeCCC-CEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 323 PIKDITLDRKN-KRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 323 ~P~glalD~~~-~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
....|++|+.+ +.||.+.. ....|++ ..||+...+.
T Consensus 167 ~~~~i~~~p~~~~~~y~~~~-~~~giy~-S~DgG~TW~~ 203 (427)
T d2ebsa1 167 GYTSVIFDPERNGTIYASAT-APQGMYV-THDGGVSWEP 203 (427)
T ss_dssp CEEEEEECTTSTTCEEEEES-STTCEEE-ESSTTSSCEE
T ss_pred cceEEEecccccceeeeeee-eccccee-ccCCCCCceE
Confidence 23458887654 66777666 6666765 4566554443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.04 E-value=13 Score=34.32 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCCcEEEEEc-C-Cc-EEEEEeCCC---------CCceEEEEEECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 27 GPFVYGVKTLSHSLHYVNI-E-VK-VAKVVSMPD---------AAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~-d-G~-~~~i~~~~~---------~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
++.||+..+..+.|..+|. + |. +=+.-.... .....|+++.+++||+.+. .+++..+| .+|+..
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-~g~l~alda~tG~~~ 138 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-CCcEEeeehhhhhhh
Confidence 5799999876788999997 5 66 322211000 1122578999999999975 47899999 788764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=12 Score=33.52 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=61.6
Q ss_pred EEcCCCC--EEEEEEcCCCeEEEEeeCC----CC-CceeEEEcCCCCeEEE---EecCCCCeEEEEec-------CCCCe
Q psy5792 251 WSDPKEN--VIEVARLTGQYRYVLISGG----VD-QPSALAVDPESGYLFW---SESGKIPLIARAGL-------DGKKQ 313 (377)
Q Consensus 251 wtd~~~~--~I~~~~~~g~~~~~l~~~~----~~-~P~~iavdp~~g~lyw---td~g~~~~I~r~~l-------dG~~~ 313 (377)
|.+...+ .|..++......+++.... +. ......+.|.++.++| ++.+....++...+ +|...
T Consensus 272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~ 351 (465)
T d1xfda1 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (465)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence 4454433 5777888776666665421 11 1233456665665544 33322456666644 23333
Q ss_pred EEEEecCCCCceEEEEeCCCCEEEEEEeC---CCCeEEEEEccCCceEEEE
Q psy5792 314 TILAQEIIMPIKDITLDRKNKRVYWCYSV---GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 314 ~~l~~~~~~~P~glalD~~~~~LYw~d~~---~~~~i~~~~~~G~~~~~~~ 361 (377)
+.|......--.-+++|..++.||++-.. ....+++++++|+..++.+
T Consensus 352 ~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~l 402 (465)
T d1xfda1 352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL 402 (465)
T ss_dssp CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred EEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceee
Confidence 33333321111225799999999998541 2456999999988665543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.45 E-value=7.6 Score=31.02 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=80.9
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
.....+.+.+.++.+.... ..+.+...++.......... ........+++++. ++++.+-...+.|...++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFT-------GHREWVRMVRPNQD-GTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred ccceeeeccCCCceEEeec-cCcceeEeecccceeeeEEc-------cCCCcceeeecccC-CCEEEEEeCCCeEEEEee
Confidence 3456666776666655444 45677777776433333333 23345677888764 445555555667888877
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCC-------------------eEEEEecCCCCeEEEEecCCCCeEEEEecCCCCce
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESG-------------------YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g-------------------~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~ 325 (377)
........+.........++..|... .++.+-. ....|...++.......-+...-....
T Consensus 173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-RDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-CCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 66544333332233344555544322 1222211 124454444442222111222124456
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
.+++.+.+..|+.+ . ..+.|...++..+.
T Consensus 252 ~~~~~~~~~~l~s~-~-~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 252 GVLFHSGGKFILSC-A-DDKTLRVWDYKNKR 280 (317)
T ss_dssp EEEECSSSSCEEEE-E-TTTEEEEECCTTSC
T ss_pred EEEECCCCCEEEEE-E-CCCeEEEEECCCCc
Confidence 78887654444443 4 46777777775443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.96 E-value=9.1 Score=30.73 Aligned_cols=134 Identities=12% Similarity=0.032 Sum_probs=68.6
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
.++++..+.+.++..++..... ...........+..+++++.+.+|...+ ..+.|...++.... ..... ..
T Consensus 132 ~~~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~--~~~~~-~~-- 202 (287)
T d1pgua2 132 YVAVGLEEGNTIQVFKLSDLEV---SFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSRE--VKTSR-WA-- 202 (287)
T ss_dssp EEEEEETTTSCEEEEETTEEEE---EEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--EEECC-SC--
T ss_pred ceeeeccccceeeeeeccccce---eeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccc--ccccc-cc--
Confidence 4555554433466666543311 1111112234578899999777777666 56788888876322 22210 00
Q ss_pred CCCCCCcceEEEecc---------CCeEEEEcCCCCEEEEEEcCC-CeEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWI---------AQNIYWSDPKENVIEVARLTG-QYRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 231 ~~~~~~p~~iavD~~---------~~~lYwtd~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
.....+..+++.+. .+.++.+-...++|.+.+++. ...............+++..| ++.|+-+
T Consensus 203 -~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~~l~s~ 275 (287)
T d1pgua2 203 -FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSS 275 (287)
T ss_dssp -CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTEEEEE
T ss_pred -ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CCEEEEE
Confidence 11233566666543 234555555556777777643 222222222344567777776 3554443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.67 E-value=13 Score=30.17 Aligned_cols=106 Identities=10% Similarity=-0.001 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 275 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~ 275 (377)
++.+.... ..+.|...++.......... ........+++++....+ ++-...+.|...++........+..
T Consensus 171 ~~~~~~~~-~d~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 171 GNIVVSGS-YDNTLIVWDVAQMKCLYILS-------GHTDRIYSTIYDHERKRC-ISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp TTEEEEEE-TTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEEETTTTEE-EEEETTSCEEEEETTTCCEEEEECC
T ss_pred cceeeeec-ccceeeeeecccccceeeee-------ccccccccccccccceee-ecccccceEEeeecccccccccccc
Confidence 34444333 45667767765332222222 233456778888755544 4555567888888876554444444
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeE
Q psy5792 276 GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT 314 (377)
Q Consensus 276 ~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~ 314 (377)
.......++.++ .+|+... ....|...++....+.
T Consensus 242 h~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 242 HTALVGLLRLSD--KFLVSAA--ADGSIRGWDANDYSRK 276 (355)
T ss_dssp CSSCCCEEEECS--SEEEEEC--TTSEEEEEETTTCCEE
T ss_pred cccccccccccc--ceeeeee--ccccccccccccccee
Confidence 344457787764 3554443 2467777676644433
|