Psyllid ID: psy5804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKINSK
Secondary Structure (PSIPRED)
ccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccEEHHHHHHHHcccccEEEEEEHHHHHHccHHHHHHHHHHcccccHEEEEEHHccccEEEEEEccc
Coil and Loop (DISEMBL)
megfddagiffsdnfgaedqqsgIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSlkrnynlgqYFLEINIEDLTSWRIFKINSK
Flexible Loop (DISEMBL)
MEGFDDAGIFFsdnfgaedqqSGIQVNLQSVKRKFKEFLRQFHEgnfnykyrdsLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEiniedltswrifkinsk
Low Complexity Region (SEG)
MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKINSK
Disordered region (IsUnstruct)
*******GIFFSDNFG******GIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKI***
Disordered Region (DISOPRED)
*EGFDDAGIFF*********************RKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKIN**
Disordered Region (DISEMBL)
MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKINSK
Disordered Region (DISPRO)
****DDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKINS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKINSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q9VGW6	733	DNA replication licensing	yes	N/A	0.663	0.102	0.684	3e-26
P33992	734	DNA replication licensing	yes	N/A	0.672	0.103	0.525	7e-20
Q0V8B7	734	DNA replication licensing	yes	N/A	0.672	0.103	0.512	2e-19
P49718	733	DNA replication licensing	yes	N/A	0.672	0.103	0.512	5e-19
P55862	735	DNA replication licensing	N/A	N/A	0.663	0.102	0.512	3e-18
Q561P5	735	DNA replication licensing	yes	N/A	0.663	0.102	0.512	1e-17
Q6PCI7	735	DNA replication licensing	N/A	N/A	0.663	0.102	0.512	1e-17
Q21902	759	DNA replication licensing	yes	N/A	0.672	0.100	0.35	5e-08

>sp|Q9VGW6|MCM5_DROME DNA replication licensing factor Mcm5 OS=Drosophila melanogaster GN=Mcm5 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDDAG+FFSDNFG ++QQ   Q+NLQ+VK+K+KEF+R F+E NF YKYRD+LKRNY 
Sbjct: 1  MEGFDDAGVFFSDNFGGDNQQDA-QINLQAVKKKYKEFIRTFNEENFFYKYRDTLKRNYL 59

Query: 61 LGQYFLEINIEDLTSF 76
           G+YFLEI +EDL  F
Sbjct: 60 NGRYFLEIEMEDLVGF 75

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|P33992|MCM5_HUMAN DNA replication licensing factor MCM5 OS=Homo sapiens GN=MCM5 PE=1 SV=5

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 4/80 (5%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
          M GFDD GIF+SD+FG + Q    Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct: 1  MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 57 RNYNLGQYFLEINIEDLTSF 76
          R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Interacts with MCMBP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q0V8B7|MCM5_BOVIN DNA replication licensing factor MCM5 OS=Bos taurus GN=MCM5 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 4/80 (5%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
          M GFDD GIF+SD+FG ++     Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct: 1  MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 57 RNYNLGQYFLEINIEDLTSF 76
          R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P49718|MCM5_MOUSE DNA replication licensing factor MCM5 OS=Mus musculus GN=Mcm5 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
          M GFDD GIF+SD+FG +      Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct: 1  MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query: 57 RNYNLGQYFLEINIEDLTSF 76
          R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P55862|MCM5A_XENLA DNA replication licensing factor mcm5-A OS=Xenopus laevis GN=mcm5-a PE=1 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 7/82 (8%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
          M GFDD G+++SD+FG E QQ G   Q     +K++F+EFLRQ+  G     F +KYRD 
Sbjct: 1  MSGFDDLGVYYSDSFGGE-QQVGDDGQAKKSQLKKRFREFLRQYRIGTDRTGFTFKYRDE 59

Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
          LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q561P5|MCM5_XENTR DNA replication licensing factor mcm5 OS=Xenopus tropicalis GN=mcm5 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 7/82 (8%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
          M GFDD GI++SD+FG E Q  G   Q     +K++F+EFLRQ+  G     F +KYRD 
Sbjct: 1  MSGFDDLGIYYSDSFGGE-QPVGDDGQAKKSQLKKRFREFLRQYRVGTDRTGFTFKYRDE 59

Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
          LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6PCI7|MCM5B_XENLA DNA replication licensing factor mcm5-B OS=Xenopus laevis GN=mcm5-b PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 7/82 (8%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
          M GFDD GI++SD+FG E Q  G   Q     +K++F+EFLRQ+  G     F +KYRD 
Sbjct: 1  MSGFDDLGIYYSDSFGGE-QPVGDDGQAKKSQLKKRFREFLRQYRVGTDRTGFTFKYRDE 59

Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
          LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q21902|MCM5_CAEEL DNA replication licensing factor mcm-5 OS=Caenorhabditis elegans GN=mcm-5 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 1  MEGFDDAGIFFSDNF----GAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLK 56
          M   D+ GI++ + F    G  D    +    + +  +F+ F+R F  G F   YRD LK
Sbjct: 1  MSNLDNPGIYYQERFFANDGVPDTGRELIAEYRQLITQFRNFIRDFSTGGFGMIYRDQLK 60

Query: 57 RNYNLGQYFLEINIEDLTSF 76
          RNY   +Y LEIN+  L +F
Sbjct: 61 RNYFSHEYRLEINLNHLKNF 80

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
321461636	732	putative MCM5, Minichromosome maintenanc	0.672	0.103	0.697	2e-28
307183989	732	DNA replication licensing factor MCM5 [C	0.663	0.102	0.75	4e-28
270009832	759	hypothetical protein TcasGA2_TC009146 [T	0.672	0.100	0.697	7e-28
427788873	732	Putative dna replication licensing facto	0.672	0.103	0.671	7e-28
91086389	732	PREDICTED: similar to DNA replication li	0.672	0.103	0.697	7e-28
307199084	732	DNA replication licensing factor MCM5 [H	0.663	0.102	0.763	8e-28
357622203	106	hypothetical protein KGM_09813 [Danaus p	0.672	0.716	0.763	3e-27
383863981	732	PREDICTED: DNA replication licensing fac	0.663	0.102	0.710	3e-26
391332468	736	PREDICTED: DNA replication licensing fac	0.672	0.103	0.618	8e-26
195451611	734	GK13898 [Drosophila willistoni] gi|19416	0.761	0.117	0.627	2e-25

>gi|321461636|gb|EFX72666.1| putative MCM5, Minichromosome maintenance complex component 5 [Daphnia pulex]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 69/76 (90%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD GI++SDNFG+E+Q +   VN Q++K+KFK+F+RQFHEGNFNYKYRD+LK+ YN
Sbjct: 1  MEGFDDPGIYYSDNFGSEEQANETAVNNQAIKKKFKDFIRQFHEGNFNYKYRDALKQQYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          LGQYFLE++IED++SF
Sbjct: 61 LGQYFLEVSIEDISSF 76

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183989|gb|EFN70560.1| DNA replication licensing factor MCM5 [Camponotus floridanus]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/76 (75%), Positives = 67/76 (88%), Gaps = 1/76 (1%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD G+FFSDNF A D+ +  +VNLQ  K+KFKEF+RQFHEGNFNYKYRD+LKRNYN
Sbjct: 1  MEGFDDPGVFFSDNF-AIDEANENRVNLQHSKKKFKEFIRQFHEGNFNYKYRDTLKRNYN 59

Query: 61 LGQYFLEINIEDLTSF 76
          LGQY+LEIN+EDL +F
Sbjct: 60 LGQYWLEINLEDLAAF 75

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009832|gb|EFA06280.1| hypothetical protein TcasGA2_TC009146 [Tribolium castaneum]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 65/76 (85%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD G+F+SDNF  ED QS  Q+NLQ VK+KFKEF+RQ+H  NF+YKYRD+LKRNYN
Sbjct: 1  MEGFDDPGVFYSDNFTVEDNQSDPQINLQGVKKKFKEFIRQYHTDNFSYKYRDTLKRNYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          L QY+LE+NIED+ +F
Sbjct: 61 LRQYYLEVNIEDVGAF 76

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788873|gb|JAA59888.1| Putative dna replication licensing factor mcm4 component [Rhipicephalus pulchellus]

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/76 (67%), Positives = 67/76 (88%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          M GFDD G+FFSDNF +E+ Q   QVNLQ+VKR+F++FLRQFHEGNFNY+YRD LK++YN
Sbjct: 1  MAGFDDGGVFFSDNFSSENTQDDSQVNLQAVKRRFRDFLRQFHEGNFNYRYRDQLKQHYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          +GQY+LE+ +ED++SF
Sbjct: 61 MGQYWLEVAMEDISSF 76

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086389|ref|XP_974797.1| PREDICTED: similar to DNA replication licensing factor MCM5 [Tribolium castaneum]

 Score =  127 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/76 (69%), Positives = 65/76 (85%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD G+F+SDNF  ED QS  Q+NLQ VK+KFKEF+RQ+H  NF+YKYRD+LKRNYN
Sbjct: 1  MEGFDDPGVFYSDNFTVEDNQSDPQINLQGVKKKFKEFIRQYHTDNFSYKYRDTLKRNYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          L QY+LE+NIED+ +F
Sbjct: 61 LRQYYLEVNIEDVGAF 76

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199084|gb|EFN79794.1| DNA replication licensing factor MCM5 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/76 (76%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD G+FFSDNF A D+    QVNLQ  K+KFKEF+RQFHEGNFNYKYRD+LKRNYN
Sbjct: 1  MEGFDDPGVFFSDNF-AIDETHENQVNLQHSKKKFKEFIRQFHEGNFNYKYRDTLKRNYN 59

Query: 61 LGQYFLEINIEDLTSF 76
          L QY+LEINIEDL +F
Sbjct: 60 LRQYWLEINIEDLAAF 75

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622203|gb|EHJ73767.1| hypothetical protein KGM_09813 [Danaus plexippus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/76 (76%), Positives = 69/76 (90%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD G+FFSDNFG E+ +S  QVNLQ+VK+KFKEF+RQFH GNFN+KYRD+LKRNYN
Sbjct: 1  MEGFDDPGVFFSDNFGVEENESQDQVNLQAVKKKFKEFIRQFHTGNFNFKYRDALKRNYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          L QY++EINIEDL+SF
Sbjct: 61 LRQYWVEINIEDLSSF 76

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863981|ref|XP_003707458.1| PREDICTED: DNA replication licensing factor Mcm5-like [Megachile rotundata]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDD GIFFSDNF   +     QVNLQ  K+KF EF+RQFHEGNFNYKYRD+LKRNYN
Sbjct: 1  MEGFDDPGIFFSDNFSVGESNES-QVNLQFSKKKFMEFIRQFHEGNFNYKYRDTLKRNYN 59

Query: 61 LGQYFLEINIEDLTSF 76
          LGQY++EI++EDL +F
Sbjct: 60 LGQYWVEISLEDLAAF 75

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391332468|ref|XP_003740656.1| PREDICTED: DNA replication licensing factor mcm5-A-like [Metaseiulus occidentalis]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/76 (61%), Positives = 66/76 (86%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          M GFD+AG+F+SDNFG+E+  +  Q+N Q++K +F+EFLRQFHEGNFNY+YRD LK++YN
Sbjct: 1  MSGFDEAGVFYSDNFGSENTNNDQQINYQAIKGRFREFLRQFHEGNFNYRYRDQLKQHYN 60

Query: 61 LGQYFLEINIEDLTSF 76
          +GQY++E+ IED+ SF
Sbjct: 61 MGQYWIEVQIEDVASF 76

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451611|ref|XP_002072999.1| GK13898 [Drosophila willistoni] gi|194169084|gb|EDW83985.1| GK13898 [Drosophila willistoni]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1  MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
          MEGFDDAG+FFSDNFG + Q  G Q+NLQ+VK+K+KEF+R F+E NF YKYRD+LKRNY 
Sbjct: 1  MEGFDDAGVFFSDNFGNDHQPDGAQINLQAVKKKYKEFIRTFNEDNFFYKYRDTLKRNYL 60

Query: 61 LGQYFLEINIEDLTSFFINNIDSLKR 86
           G+YFLEI +EDL  F     D+L +
Sbjct: 61 NGRYFLEIEMEDLVGFDEALADTLNK 86

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
FB|FBgn0017577	733	Mcm5 "Minichromosome maintenan	0.752	0.115	0.627	3.7e-25
UNIPROTKB|B1AHB1	691	MCM5 "MCM5 minichromosome main	0.672	0.109	0.525	1.6e-17
UNIPROTKB|P33992	734	MCM5 "DNA replication licensin	0.672	0.103	0.525	1.7e-17
UNIPROTKB|A6H7F8	734	MCM5 "Minichromosome maintenan	0.672	0.103	0.512	3.7e-17
UNIPROTKB|Q0V8B7	734	MCM5 "DNA replication licensin	0.672	0.103	0.512	3.7e-17
UNIPROTKB|Q5ZKL0	734	MCM5 "Uncharacterized protein"	0.672	0.103	0.512	6e-17
MGI|MGI:103197	733	Mcm5 "minichromosome maintenan	0.672	0.103	0.512	7.7e-17
UNIPROTKB|P55862	735	mcm5-a "DNA replication licens	0.663	0.102	0.5	1.6e-16
RGD|1306616	734	Mcm5 "minichromosome maintenan	0.672	0.103	0.5	2.1e-16
UNIPROTKB|D4A8Y9	735	Mcm5 "Protein Mcm5" [Rattus no	0.672	0.103	0.5	2.1e-16

FB|FBgn0017577 Mcm5 "Minichromosome maintenance 5" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
             MEGFDDAG+FFSDNFG ++QQ   Q+NLQ+VK+K+KEF+R F+E NF YKYRD+LKRNY 
Sbjct:     1 MEGFDDAGVFFSDNFGGDNQQDA-QINLQAVKKKYKEFIRTFNEENFFYKYRDTLKRNYL 59

Query:    61 LGQYFLEINIEDLTSFFINNIDSLKR 86
              G+YFLEI +EDL  F     D L +
Sbjct:    60 NGRYFLEIEMEDLVGFDETLADKLNK 85

GO:0005656 "pre-replicative complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0006267 "pre-replicative complex assembly" evidence=ISS

GO:0030261 "chromosome condensation" evidence=IMP

GO:0042555 "MCM complex" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

UNIPROTKB|B1AHB1 MCM5 "MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae), isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 42/80 (52%), Positives = 56/80 (70%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG + Q    Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|P33992 MCM5 "DNA replication licensing factor MCM5" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 42/80 (52%), Positives = 56/80 (70%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG + Q    Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042555 "MCM complex" evidence=IDA

GO:0005634 "nucleus" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A6H7F8 MCM5 "Minichromosome maintenance complex component 5" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG ++     Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

UNIPROTKB|Q0V8B7 MCM5 "DNA replication licensing factor MCM5" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 3.7e-17, P = 3.7e-17
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG ++     Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0005634 "nucleus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

UNIPROTKB|Q5ZKL0 MCM5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 6.0e-17, P = 6.0e-17
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFD+ GI++SD+FG +      QV    ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDEPGIYYSDSFGVDTSADEGQVRKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLGQY++E+ +EDL SF
Sbjct:    61 RHYNLGQYWVEVEMEDLASF 80

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

MGI|MGI:103197 Mcm5 "minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 218 (81.8 bits), Expect = 7.7e-17, P = 7.7e-17
 Identities = 41/80 (51%), Positives = 55/80 (68%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG +      Q     ++R+FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042555 "MCM complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|P55862 mcm5-a "DNA replication licensing factor mcm5-A" [Xenopus laevis (taxid:8355)]

 Score = 215 (80.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 41/82 (50%), Positives = 57/82 (69%)

Query:     1 MEGFDDAGIFFSDNFGAEDQ--QSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
             M GFDD G+++SD+FG E Q    G Q     +K++F+EFLRQ+  G     F +KYRD 
Sbjct:     1 MSGFDDLGVYYSDSFGGEQQVGDDG-QAKKSQLKKRFREFLRQYRIGTDRTGFTFKYRDE 59

Query:    55 LKRNYNLGQYFLEINIEDLTSF 76
             LKR+YNLG+Y++E+ +EDL SF
Sbjct:    60 LKRHYNLGEYWIEVEMEDLASF 81

GO:0000785 "chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA;IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

RGD|1306616 Mcm5 "minichromosome maintenance complex component 5" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG +      Q     ++++FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSHLQKRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA;ISO

UNIPROTKB|D4A8Y9 Mcm5 "Protein Mcm5" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 40/80 (50%), Positives = 55/80 (68%)

Query:     1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
             M GFDD GIF+SD+FG +      Q     ++++FKEFLRQ+  G     F +KYRD LK
Sbjct:     1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSHLQKRFKEFLRQYRVGTDRTGFTFKYRDELK 60

Query:    57 RNYNLGQYFLEINIEDLTSF 76
             R+YNLG+Y++E+ +EDL SF
Sbjct:    61 RHYNLGEYWIEVEMEDLASF 80

GO:0003677 "DNA binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33992	MCM5_HUMAN	3, ., 6, ., 4, ., 1, 2	0.525	0.6725	0.1035	yes	N/A
P49718	MCM5_MOUSE	3, ., 6, ., 4, ., 1, 2	0.5125	0.6725	0.1036	yes	N/A
Q561P5	MCM5_XENTR	3, ., 6, ., 4, ., 1, 2	0.5121	0.6637	0.1020	yes	N/A
Q9VGW6	MCM5_DROME	3, ., 6, ., 4, ., 1, 2	0.6842	0.6637	0.1023	yes	N/A
Q0V8B7	MCM5_BOVIN	3, ., 6, ., 4, ., 1, 2	0.5125	0.6725	0.1035	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG0481|consensus	729		99.81
PF14551	121	MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1	99.65
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.08
KOG0479|consensus	818		98.86
KOG0478|consensus	804		98.77
KOG0477|consensus	854		98.64
KOG0480|consensus	764		98.48
KOG0482|consensus	721		98.16
COG1241	682	MCM2 Predicted ATPase involved in replication cont	97.84
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	86.2

>KOG0481|consensus

Probab=99.81  E-value=1.4e-19  Score=146.98  Aligned_cols=102  Identities=43%  Similarity=0.704  Sum_probs=91.4

Q ss_pred             CCCCCCcceeecCCCCCcccccccccHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHH
Q psy5804           2 EGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNI   81 (113)
Q Consensus         2 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La   81 (113)
                      +|||+++|||++.++++...+  +.....++++|++|++.|+.+.. ++|+++|++++..+.++|+|++.||.+||.+|+
T Consensus         1 ~~~D~~~i~~~d~f~~d~~~d--~~~~~~v~~~fkefir~f~~~~~-f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~   77 (729)
T KOG0481|consen    1 SGFDEPGIYYSDSFGGDGQAD--TGRKSQVKTKFKEFIRQFRTGTD-FKYRDQLKRNYNLGEYSLEVELEDLISFDEDLA   77 (729)
T ss_pred             CCCCCCceEeecccCCCCccc--cccHHHHHHHHHHHHHHhccccc-cchHHHHHhcccccceEEEEEHHHhhccchHHH
Confidence            479999999999877655432  22678899999999999998744 899999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          82 DSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        82 ~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      +.|...|.++||+||+|+++++.+.
T Consensus        78 ~~L~~~P~~~lp~fEeAa~~Vad~i  102 (729)
T KOG0481|consen   78 DKLSKQPADHLPLFEEAAKEVADEI  102 (729)
T ss_pred             HHHHhChHhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998765

>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E

Probab=99.65  E-value=5.6e-17  Score=108.32  Aligned_cols=73  Identities=27%  Similarity=0.401  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        31 ~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      ++++|++||++|+.   ..+|+++|.+|...+..+|.||+.||.+|+++||..|+++|.+++|+|++|+++++.+.
T Consensus         1 i~~~F~~Fl~~f~~---~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~   73 (121)
T PF14551_consen    1 IKRRFREFLREFKE---EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKEL   73 (121)
T ss_dssp             --HHHHHHCCCH-T---S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT
T ss_pred             ChHHHHHHHHcCCC---chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999974   46899999999999999999999999999999999999999999999999999998753

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.08  E-value=5.2e-10  Score=96.47  Aligned_cols=80  Identities=18%  Similarity=0.064  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHHHHHhhhcC---------------CCchhHHHHHHHHHhcC----------CcEEEEechhhhhhchhHH
Q psy5804          27 NLQSVKRKFKEFLRQFHEG---------------NFNYKYRDSLKRNYNLG----------QYFLEINIEDLTSFFINNI   81 (113)
Q Consensus        27 ~~~~~~~~Fk~Fl~~f~~~---------------~~~~~Y~e~L~~~~~~~----------~~sL~Vd~~dL~~f~~~La   81 (113)
                      ...++.++|.+||++|.+-               .....|..+|.+|+...          +.+|+||+.||.+|++.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~  163 (915)
T PTZ00111         84 RLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLY  163 (915)
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHH
Confidence            4568999999999999542               12356999999999865          4799999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          82 DSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        82 ~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      ++|+++|.++||+|++|+++++...
T Consensus       164 ~~l~~~P~e~i~~~e~~l~~~~~~~  188 (915)
T PTZ00111        164 KLLVTFPADCIAELDKVLVKLFNEL  188 (915)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986554

>KOG0479|consensus

Probab=98.86  E-value=7.6e-09  Score=86.07  Aligned_cols=77  Identities=26%  Similarity=0.287  Sum_probs=68.2

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      ...+..+.|.+||+++.+   ...|.+.++.|+..++++|.||++||+.|++++|..|+.+|.+.+|.|+.|+++++...
T Consensus         9 ~~~e~~r~f~efLd~~~D---~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~   85 (818)
T KOG0479|consen    9 RFRERVRDFIEFLDDEED---ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRI   85 (818)
T ss_pred             HHHHHHHHHHHHhcchhh---hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcc
Confidence            345666778888877754   35899999999999999999999999999999999999999999999999999998763

>KOG0478|consensus

Probab=98.77  E-value=7.1e-09  Score=87.14  Aligned_cols=84  Identities=24%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             ccccHHHHHHHHHHHHHhhhcC-CCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804          24 IQVNLQSVKRKFKEFLRQFHEG-NFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDL  102 (113)
Q Consensus        24 ~~~~~~~~~~~Fk~Fl~~f~~~-~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei  102 (113)
                      .+++.++..+.|+.|+++|+.- .....|.+.|.++...+...+++|+.||..|+.+||+.+..+|+++||+|+.+++++
T Consensus       126 t~v~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~  205 (804)
T KOG0478|consen  126 TNVNIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEI  205 (804)
T ss_pred             eEEEHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHH
Confidence            4568899999999999999522 234679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy5804         103 TSWRI  107 (113)
Q Consensus       103 ~~~~~  107 (113)
                      +-.++
T Consensus       206 ~~e~~  210 (804)
T KOG0478|consen  206 VLERY  210 (804)
T ss_pred             HHhhc
Confidence            87665

>KOG0477|consensus

Probab=98.64  E-value=5.9e-08  Score=81.29  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      ...++.++|++||++|.+.++..+|.+.|++|+..+..||+|++.||..-.+.||.+|-+.|.++|.+|+.|+.+++...
T Consensus       157 ~r~~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~  236 (854)
T KOG0477|consen  157 VRREIARRFKNFLREYVDENGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLH  236 (854)
T ss_pred             hhhHHHHHHHHHHHHHhcccccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            34678899999999999988888999999999999999999999999999999999999999999999999999987654

>KOG0480|consensus

Probab=98.48  E-value=7.8e-07  Score=74.68  Aligned_cols=78  Identities=18%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhh-hchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804          28 LQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS-FFINNIDSLKRNYNLGQYFLEINIEDLTSW  105 (113)
Q Consensus        28 ~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~-f~~~La~~L~~~P~e~ip~fe~av~ei~~~  105 (113)
                      ...+.+.|..|+.+|....++.+|...+..+...+..+|.||+.||.. |+++||..|.++|..++|.+..|+..++..
T Consensus        22 g~~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d  100 (764)
T KOG0480|consen   22 GERVEEEFLQFLESFKVQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKD  100 (764)
T ss_pred             ccchHHHHHHHHHHhhccccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            356788899999999986677899999999999899999999999999 999999999999999999999999998766

>KOG0482|consensus

Probab=98.16  E-value=9.1e-06  Score=67.28  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhch--hHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804          29 QSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFI--NNIDSLKRNYNLGQYFLEINIEDLTSW  105 (113)
Q Consensus        29 ~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~--~La~~L~~~P~e~ip~fe~av~ei~~~  105 (113)
                      ..-+.+.+.|+.+|.+++...+|+++|.+...+++.+++||++||..|+.  +|...|..|-..+..+|..|+.+++..
T Consensus        11 ~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~   89 (721)
T KOG0482|consen   11 AADKNKIKKFLDEFYEDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPE   89 (721)
T ss_pred             hhhhHHHHHHHHhhhccCchhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34567888999999887666689999999999999999999999999984  799999999999999999999998654

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=97.84  E-value=4.4e-05  Score=64.89  Aligned_cols=71  Identities=17%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        31 ~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      +.++|+  +. |..++ ...|.+++ .+......+++|++.||..|+++||..|+++|.+++|+|+.|+.++....
T Consensus         3 ~~~~~~--~~-~~~~~-~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~   73 (682)
T COG1241           3 IAELFR--LR-FKWED-ILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLL   73 (682)
T ss_pred             hhhhhh--hh-cccch-HHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhc
Confidence            456677  34 65542 45677765 33333444999999999999999999999999999999999999998764

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=86.20  E-value=0.51  Score=28.19  Aligned_cols=48  Identities=10%  Similarity=-0.022  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHH
Q psy5804          51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEIN   98 (113)
Q Consensus        51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~a   98 (113)
                      -..+|++++..+-..|.-=+..|..-+|.|+..|.++|++.+.++.+.
T Consensus         9 qf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~   56 (59)
T PF09280_consen    9 QFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNPEEFLRLLNEP   56 (59)
T ss_dssp             HHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTHHHHHHHHHST
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCHHHHHHHHcCC
Confidence            445677777665555555567888999999999999999999987653

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	2e-12
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	2e-11
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	2e-05

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSF 76
           +  F EFL  F   N   KY + +       +  L I   D+ SF
Sbjct: 4  YRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSF 49

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Length = 268

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 29 QSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSF 76
             +  F EFL  F   N   KY + +       +  L I   D+ SF
Sbjct: 8  IDYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSF 55

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Length = 279

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 25 QVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSF 76
           V+      KF+EF       ++  +  +++++  N     +E++  DL  F
Sbjct: 8  TVDKSKTLTKFEEFFSLQ---DYKDRVFEAIEKYPN--VRSIEVDYLDLEMF 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	99.62
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.49
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	99.48
2f4m_B	61	UV excision repair protein RAD23 homolog B; glycop	84.7
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	83.66

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}

Probab=99.62  E-value=5.6e-16  Score=116.10  Aligned_cols=77  Identities=23%  Similarity=0.187  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804          30 SVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR  106 (113)
Q Consensus        30 ~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~  106 (113)
                      ++.++|++||++|+++++.++|+++|++|+..++.+|+||+.||.+|+++||+.|+++|.++||+|++|+++++...
T Consensus         9 ~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~   85 (268)
T 2vl6_A            9 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL   85 (268)
T ss_dssp             CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence            57899999999998666778999999999999999999999999999999999999999999999999999988653

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.49  E-value=2.2e-14  Score=117.61  Aligned_cols=76  Identities=24%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804          30 SVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW  105 (113)
Q Consensus        30 ~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~  105 (113)
                      +++++|++||++|++.++.++|+++|++|+..++.+|+||+.||.+|+++||+.|+++|.+++|+|+.|+++++..
T Consensus         3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~   78 (595)
T 3f9v_A            3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ   78 (595)
T ss_dssp             CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence            4789999999999987788899999999999999999999999999999999999999999999999999998765

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11

Probab=99.48  E-value=5.1e-14  Score=106.15  Aligned_cols=70  Identities=20%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH--hcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804          26 VNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY--NLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDL  102 (113)
Q Consensus        26 ~~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~--~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei  102 (113)
                      ....+++++|++||++|       +|+++|++|.  ..++.+|+||+.||.+|+++||+.|.++|.++||+|++|++++
T Consensus         9 ~~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~   80 (279)
T 1ltl_A            9 VDKSKTLTKFEEFFSLQ-------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI   80 (279)
T ss_dssp             CCHHHHHHHHHHHTTSH-------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred             CChHHHHHHHHHHhccc-------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            35678999999999887       5999999999  7889999999999999999999999999999999999999875

>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*

Probab=84.70  E-value=0.4  Score=28.00  Aligned_cols=47  Identities=4%  Similarity=-0.029  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804          51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI   97 (113)
Q Consensus        51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~   97 (113)
                      -..+|++++..+-..|.-=+..|..-+|.|+..|.++|++++..+.+
T Consensus        12 qf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e   58 (61)
T 2f4m_B           12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE   58 (61)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcc
Confidence            44567777776666666667788899999999999999999988743

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=83.66  E-value=0.27  Score=29.74  Aligned_cols=45  Identities=4%  Similarity=0.006  Sum_probs=36.5

Q ss_pred             HHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804          53 DSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI   97 (113)
Q Consensus        53 e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~   97 (113)
                      .+|++++..+-..|.-=+..|.+-+|.|+..|.++|.++|..+.+
T Consensus        16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e   60 (72)
T 1pve_A           16 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE   60 (72)
T ss_dssp             TTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHS
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcC
Confidence            367777776666666667788899999999999999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1ltla_	239	DNA replication initiator (cdc21/cdc54) N-terminal	99.11
d2f4mb1	58	XPC-binding domain of Rad23 homolog B (Hhr23b) {Hu	80.65

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.11  E-value=5.3e-11  Score=86.00  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhc--CCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804          28 LQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNL--GQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDL  102 (113)
Q Consensus        28 ~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~--~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei  102 (113)
                      ..+...+|.+|+..       ..|.++|.++...  ..++|+||+.||..|+++||+.|.++|.+++++|++|++++
T Consensus         3 ~~~~l~~f~e~~~~-------~~y~~~i~~~~~~~~~~~sl~Vd~~~L~~~~~~L~~~l~~~P~~~l~~~~~ai~~~   72 (239)
T d1ltla_           3 KSKTLTKFEEFFSL-------QDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI   72 (239)
T ss_dssp             HHHHHHHHHHHTTS-------HHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhch-------HhHHHHHHHHHHcCCCCcEEEEEHHHHHhhCHHHHHHHHHCHHHHHHHHHHHHHhH
Confidence            45667778887533       2399999988765  47799999999999999999999999999999999999875

>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B (Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: XPC-binding domain
superfamily: XPC-binding domain
family: XPC-binding domain
domain: XPC-binding domain of Rad23 homolog B (Hhr23b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.21  Score=27.56  Aligned_cols=46  Identities=4%  Similarity=-0.017  Sum_probs=37.1

Q ss_pred             HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804          52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI   97 (113)
Q Consensus        52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~   97 (113)
                      -.+|++++..+-..|.-=+..|.+-+|.|+..|.++|++.|..+.+
T Consensus        11 Fq~lR~~vq~nP~~L~~lLqql~~~NP~L~q~I~~nqe~Fl~llne   56 (58)
T d2f4mb1          11 FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE   56 (58)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTS
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcC
Confidence            4567777776666666667888899999999999999999987653