Psyllid ID: psy5806
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1332 | 2.2.26 [Sep-21-2011] | |||||||
| O75096 | 1905 | Low-density lipoprotein r | yes | N/A | 0.946 | 0.661 | 0.382 | 0.0 | |
| Q9QYP1 | 1905 | Low-density lipoprotein r | yes | N/A | 0.949 | 0.664 | 0.385 | 0.0 | |
| Q8VI56 | 1905 | Low-density lipoprotein r | yes | N/A | 0.948 | 0.663 | 0.387 | 0.0 | |
| O75581 | 1613 | Low-density lipoprotein r | no | N/A | 0.841 | 0.694 | 0.347 | 0.0 | |
| O88572 | 1613 | Low-density lipoprotein r | no | N/A | 0.841 | 0.694 | 0.345 | 0.0 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | no | N/A | 0.838 | 0.692 | 0.336 | 0.0 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.834 | 0.688 | 0.341 | 0.0 | |
| Q07954 | 4544 | Prolow-density lipoprotei | no | N/A | 0.933 | 0.273 | 0.302 | 1e-169 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | no | N/A | 0.932 | 0.273 | 0.301 | 1e-168 | |
| P98157 | 4543 | Low-density lipoprotein r | no | N/A | 0.939 | 0.275 | 0.295 | 1e-167 |
| >sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1436 (38%), Positives = 794/1436 (55%), Gaps = 175/1436 (12%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDC 84
+G CI A W+CD + DC+ DE C + C+ ++ RC +G C+ +W CDG DC
Sbjct: 240 SGLCINAGWRCDGDADCDDQSDERNCTTS----MCTAEQFRCHSGRCVRLSWRCDGEDDC 295
Query: 85 SLGEDERNC----------------NKTCDAQKEF-------------SCMKLAEPRPTE 115
+ DE NC N C Q++ S + PR E
Sbjct: 296 ADNSDEENCENTGSPQCALDQFLCWNGRCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGE 355
Query: 116 VGSNIK----YFPLHTVR-APRKDCFSKKYL------------CDGKKHCPRG---EEG- 154
N+ VR A + C + L C + +C +G EG
Sbjct: 356 ENCNVNNGGCAQKCQMVRGAVQCTCHTGYRLTEDGHTCQDVNECAEEGYCSQGCTNSEGA 415
Query: 155 ------------PDERHCP----------------KRVSLSNKKYTAIIRNLHNVLAVDY 186
PD R C ++V +YT ++ NL N +A+D+
Sbjct: 416 FQCWCETGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDF 475
Query: 187 HYKKNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRV 229
H+++ L+ W+ +V TG++S G L+VDWVHD ++WTD+ R+
Sbjct: 476 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRI 535
Query: 230 EFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTE 289
E +LDG +RK+L+ N++KPRA+ +HP + ++WTDWG TP+IE MDGS R++I
Sbjct: 536 EVANLDGAHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 595
Query: 290 NIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFW 349
++FWPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI++GLPHPF IT++ED ++W
Sbjct: 596 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYW 655
Query: 350 TDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK--VCSHICLP 407
TDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP ++ C C+H+CLP
Sbjct: 656 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLP 715
Query: 408 NKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL-RISQLTEPSPTFETVLPVMNV 466
+ +TC CP G + +C++S ++ L++AR+ D+ RIS TE + V+P+ +V
Sbjct: 716 SGQNYTCACPTGFR-KISSHACAQSLDKFLLFARRMDIRRISFDTE--DLSDDVIPLADV 772
Query: 467 KSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYW 526
+S VA+ W+S +D +YW DV I+RA +GT Q V+ + + PAG+AIDW TNKLYW
Sbjct: 773 RSAVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYW 832
Query: 527 TESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGS 586
T++ + IEV+N DG+ T+L W+NL PRDI V P+GG MYW WG KIE AGMD S
Sbjct: 833 TDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGASPKIERAGMDAS 892
Query: 587 HRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI----------- 635
R ++ S +L P GLAID + RLYWA+ G+KTIEF LDG++++ LI
Sbjct: 893 GRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLDGSKRKVLIGSQLPHPFGLT 952
Query: 636 -----------------------ALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGG 672
L + + L DI +FHRRR + PC NGG
Sbjct: 953 LYGERIYWTDWQTKSIQSADRLTGLDRETLQENLENLMDIHVFHRRRPPVSTPCAMENGG 1012
Query: 673 CSHLCLIAPK-DGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPI 731
CSHLCL +P G C CP G L D +TCS + FL+ ++ IR +SLD+ Y +
Sbjct: 1013 CSHLCLRSPNPSGFSCTCPTGINLLSDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADV 1072
Query: 732 VLPLR-QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVD 790
V+P+ +K ++ VD + +YWSD + I R D + E ++ L T+ +AVD
Sbjct: 1073 VVPINITMKNTIAIGVDPQEGKVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVD 1132
Query: 791 AIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLT 850
AIGRK+YWTD I V ++DG KVL W NL PR+IV+++ +G M W DW
Sbjct: 1133 AIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGE---- 1188
Query: 851 NNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKR 909
N ++E + MDG++RAV + WP+ L +D + + +L W D IE L
Sbjct: 1189 NAKLERSGMDGSDRAVLINNNLGWPNGLTVDKASS-QLLWADAHTERIEAADLNGANRHT 1247
Query: 910 AYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWL-----VRAAQ 964
+ HPY LT+LD Y+YWTD Q I+RA+K +++ + + P L V AQ
Sbjct: 1248 LVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKGTGSNVI-LVRSNLPGLMDMQAVDRAQ 1306
Query: 965 NISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVI 1024
+ F N CGS NGGCSHLCL P+ F+CACPTGI L D ++C +LL++SR G I
Sbjct: 1307 PLGF-NKCGSRNGGCSHLCLPRPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSR-GSI 1364
Query: 1025 RRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP 1084
RRISLDT+D V +P PE + I DY +Y+ D+ +R D++ S I
Sbjct: 1365 RRISLDTSDHTDVHVPVPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIG 1424
Query: 1085 LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRG 1143
T D +DWVA N+Y+ D+ +TI +R DG +K+L+N+ L EP AIAV+PR+G
Sbjct: 1425 RGLKTT-DGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKG 1483
Query: 1144 LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203
LF++ WG KIE+ LDGS R VL+ DL +PN L +D+ RR++W D+ R
Sbjct: 1484 YLFWTDWG-----HIAKIERANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDR 1538
Query: 1204 IEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQW 1262
IE D G+ R++++S V+ P+ L+ + +YWTDW+ S I R +G+
Sbjct: 1539 IESADLNGKLRQVLVSHVSHPFALTQQDR-------WIYWTDWQTKS--IQRVDKYSGR- 1588
Query: 1263 DVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
+ + +N E ++I +S +Q N C +NGGC+HLCF R +VC CPD+
Sbjct: 1589 NKETVLANVEGLMDIIVVSPQRQTGTNACGVNNGGCTHLCF--ARASDFVCACPDE 1642
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1395 (38%), Positives = 784/1395 (56%), Gaps = 130/1395 (9%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
R+G C+ W+CD E DC DE C P+ C+ D+ C G CI + LC+G+ D
Sbjct: 278 RSGRCVRLSWRCDGEDDCADNSDEENCENTGSPQ-CASDQFLCWNGRCIGQRKLCNGVND 336
Query: 84 CSLGEDE---RNC-----NKTCDAQKEFSCMKLAEPR-PTEVGSNIKYFPLHTVRAPR-- 132
C DE +NC + C+ K R + + Y R +
Sbjct: 337 CGDNSDESPQQNCRPRTGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDV 396
Query: 133 KDCFSKKYLCDGKKH--------CPRGEE-GPDERHCP----------------KRVSLS 167
+C + Y G + C G E PD R C ++V
Sbjct: 397 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 456
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSL 210
+YT ++ NL N +A+D+H+++ L+ W+ +V TG++S G L
Sbjct: 457 RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 516
Query: 211 SVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKT 270
+VDWVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++WTDWG T
Sbjct: 517 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 576
Query: 271 PKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
P+IE MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI
Sbjct: 577 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 636
Query: 331 TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQP 390
++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP
Sbjct: 637 SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 696
Query: 391 NYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL-RI 447
++ C C+H+CLP+ +TC CP G ++ +C++S ++ L++AR+ D+ RI
Sbjct: 697 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAQSLDKFLLFARRMDIRRI 755
Query: 448 SQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRH 507
S TE + V+P+ +V+S VA+ W+S +D +YW DV I+RA +GT Q V+
Sbjct: 756 SFDTE--DLSDDVIPLADVRSAVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQKVVVDT 813
Query: 508 NTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIM 567
+ + PAG+AIDW TNKLYWT++ + IEV+N DG+ T+L W+NL PRDI V P+GG M
Sbjct: 814 SLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYM 873
Query: 568 YWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD 627
YW WG KIE AGMD S+R ++ S +L P GLAID + RLYWA+ G+KTIEF LD
Sbjct: 874 YWTDWGASPKIERAGMDASNRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLD 933
Query: 628 GTRKQTLI----------------------------------ALHHLKVMTKVVGLTDID 653
G++++ LI L + + L DI
Sbjct: 934 GSKRKVLIGSQLPHPFGLTLYGQRIYWTDWQTKSIQSADRLTGLDRETLQENLENLMDIH 993
Query: 654 IFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPAGNLLREDRRTCSENPSKFLLV 712
+FHR+R T PC NGGCSHLCL +P G C CP G L D +TCS + FL+
Sbjct: 994 VFHRQRPPVTTPCAVENGGCSHLCLRSPSPSGFSCTCPTGINLLLDGKTCSPGMNSFLIF 1053
Query: 713 SQTDKIRQISLDVEYRYPIVLPLRQ-LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT 771
++ +R +SLD+ Y +V+P+ +K ++ VD +YWSD + I R D +
Sbjct: 1054 ARRIDVRMVSLDIPYFADVVVPINMTMKNTIAIGVDPLEGKVYWSDSTLHRISRASLDGS 1113
Query: 772 GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831
E ++ L T+ +AVDAIGRK+YWTD I V ++DG KVL W NL PR+IV
Sbjct: 1114 QHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIV 1173
Query: 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWV 890
+++ +G M W DW N ++E + MDG++R V + WP+ L +D + + +L W
Sbjct: 1174 LYHEMGFMYWTDWGE----NAKLERSGMDGSDRTVLINNNLGWPNGLTVDKTSS-QLLWA 1228
Query: 891 DTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVE 950
D IE L + HPY LT+LD Y+YWTD Q I+RA+K +++
Sbjct: 1229 DAHTERIEVADLNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSNVI- 1287
Query: 951 FAQVDRPWL-----VRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
+ + P L V AQ + F N CGS NGGCSHLCL P+ F+CACPTGI L D +
Sbjct: 1288 LVRSNLPGLMDIQAVDRAQPLGF-NKCGSRNGGCSHLCLPRPSGFSCACPTGIQLKGDGK 1346
Query: 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR 1065
+C +LL++SR G IRRISLDT D V +P P + I DY +Y+ D+
Sbjct: 1347 TCDPSPETYLLFSSR-GSIRRISLDTDDHTDVHVPVPGLNNVISLDYDSVDGKVYYTDVF 1405
Query: 1066 SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125
+R D++ S ++ + D +DWVA N+Y+ D+ +TI +R DG +K+
Sbjct: 1406 LDVIRRADLNGSN-METVIGHGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRKV 1464
Query: 1126 LVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNE 1184
L+N+ L EP AIAV+PR+G LF++ WG KIE+ LDGS R VL+ DL +PN
Sbjct: 1465 LINNSLDEPRAIAVFPRKGYLFWTDWGHI-----AKIERANLDGSERKVLINADLGWPNG 1519
Query: 1185 LAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWT 1243
L +D+ RR++W D+ RIE D G+ R++++S V+ P+ L+ + +YWT
Sbjct: 1520 LTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPFALTQQDR-------WIYWT 1572
Query: 1244 DWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCF 1303
DW+ S I R +G+ + + +N E ++I +S +Q N C +NGGCSHLCF
Sbjct: 1573 DWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQRQTGTNACGVNNGGCSHLCF 1629
Query: 1304 YKGRTKGYVCGCPDD 1318
R +VC CPD+
Sbjct: 1630 --ARASDFVCACPDE 1642
|
Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Rattus norvegicus (taxid: 10116) |
| >sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1396 (38%), Positives = 786/1396 (56%), Gaps = 132/1396 (9%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
R+G C+ W+CD E DC DE C P+ C+ D+ C G CI + LC+GI D
Sbjct: 278 RSGRCVRLSWRCDGEDDCADNSDEENCENTGSPQ-CASDQFLCWNGRCIGQRKLCNGIND 336
Query: 84 CSLGEDE---RNC-----NKTCDAQKEFSCMKLAEPR-PTEVGSNIKYFPLHTVRAPR-- 132
C DE +NC + C+ K R + + Y R +
Sbjct: 337 CGDSSDESPQQNCRPRTGEENCNVNNGGCAQKCQMVRGAVQCTCHTGYRLTEDGRTCQDV 396
Query: 133 KDCFSKKYLCDGKKH--------CPRGEE-GPDERHCP----------------KRVSLS 167
+C + Y G + C G E PD R C ++V
Sbjct: 397 NECAEEGYCSQGCTNTEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 456
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSL 210
+YT ++ NL N +A+D+H+++ L+ W+ +V TG++S G L
Sbjct: 457 RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 516
Query: 211 SVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKT 270
+VDWVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++WTDWG T
Sbjct: 517 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 576
Query: 271 PKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
P+IE MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI
Sbjct: 577 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 636
Query: 331 TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQP 390
++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP
Sbjct: 637 SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 696
Query: 391 NYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL-RI 447
++ C C+H+CLP+ +TC CP G ++ +C++S ++ L++AR+ D+ RI
Sbjct: 697 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAQSLDKFLLFARRMDIRRI 755
Query: 448 SQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRH 507
S TE + V+P+ +V+S VA+ W+S +D +YW DV I+RA +GT Q V+
Sbjct: 756 SFDTE--DLSDDVIPLADVRSAVALDWDSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDT 813
Query: 508 NTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIM 567
+ + PAG+AIDW TNKLYWT++ + IEV+N DG+ T+L W+NL PRDI V P+GG M
Sbjct: 814 SLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDIVVEPMGGYM 873
Query: 568 YWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD 627
YW WG KIE AGMD S R ++ S +L P GLAID + RLYWA+ G+KTIEF LD
Sbjct: 874 YWTDWGASPKIERAGMDASSRQVIISSNLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLD 933
Query: 628 GTRKQTLI----------------------------------ALHHLKVMTKVVGLTDID 653
G++++ LI L + + L DI
Sbjct: 934 GSKRKVLIGSQLPHPFGLTLYGQRIYWTDWQTKSIQSADRLTGLDRETLQENLENLMDIH 993
Query: 654 IFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPAG-NLLREDRRTCSENPSKFLL 711
+FHR+R T C NGGCSHLCL +P G C CP G NLLR D +TCS + FL+
Sbjct: 994 VFHRQRPPVTTLCAVENGGCSHLCLRSPNPSGFSCTCPTGINLLR-DGKTCSPGMNSFLI 1052
Query: 712 VSQTDKIRQISLDVEYRYPIVLPLRQ-LKMVASVDVDTKNEYIYWSDISEKTIERVRFDM 770
++ +R +SLD+ Y +V+P+ +K ++ VD +YWSD + I R D
Sbjct: 1053 FARRIDVRMVSLDIPYFADVVVPINMTMKNTIAIGVDPLEGKVYWSDSTLHRISRASLDG 1112
Query: 771 TGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSI 830
+ E ++ L T+ +AVDAIGRK+YWTD I V ++DG KVL W NL PR+I
Sbjct: 1113 SQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAI 1172
Query: 831 VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYW 889
V+++ +G M W DW N ++E + MDG++R V + WP+ L +D + + +L W
Sbjct: 1173 VLYHEMGFMYWTDWGE----NAKLERSGMDGSDRTVLINNNLGWPNGLTVDKT-SSQLLW 1227
Query: 890 VDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIV 949
D IE L + HPY LT+LD Y+YWTD Q I+RA+K +++
Sbjct: 1228 ADAHTERIEVADLNGANRHTLVSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSNVI 1287
Query: 950 EFAQVDRPWL-----VRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADR 1004
+ + P L V AQ + F N CGS NGGCSHLCL P+ F+CACPTGI L DR
Sbjct: 1288 -LVRSNLPGLMDIQAVDRAQPLGF-NKCGSRNGGCSHLCLPRPSGFSCACPTGIQLKGDR 1345
Query: 1005 RSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM 1064
++C +LL++SR G IRRISLDT D V +P P + I DY +Y+ D+
Sbjct: 1346 KTCDPSPETYLLFSSR-GSIRRISLDTDDHTDVHVPVPGLNNVISLDYDSVHGKVYYTDV 1404
Query: 1065 RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK 1124
+R D++ S ++ + D +DWVA N+Y+ D+ +TI +R DG +K
Sbjct: 1405 FLDVIRRADLNGSN-METVIGHGLKTTDGLAVDWVARNLYWTDTGRNTIEASRLDGSCRK 1463
Query: 1125 ILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN 1183
+L+N+ L EP AIAV+PR+G LF++ WG KIE+ LDGS R VL+ DL +PN
Sbjct: 1464 VLINNSLDEPRAIAVFPRKGYLFWTDWG-----HIAKIERANLDGSERKVLINTDLGWPN 1518
Query: 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYW 1242
L +D+ RR++W D+ RIE D G+ R++++S V+ P+ L+ + +YW
Sbjct: 1519 GLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPFALTQQDR-------WIYW 1571
Query: 1243 TDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLC 1302
TDW+ S I R +G+ + + +N E ++I +S +Q N C +NGGC+HLC
Sbjct: 1572 TDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQRQTGTNACGVNNGGCTHLC 1628
Query: 1303 FYKGRTKGYVCGCPDD 1318
F R +VC CPD+
Sbjct: 1629 F--ARASDFVCACPDE 1642
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Mus musculus (taxid: 10090) |
| >sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/1212 (34%), Positives = 632/1212 (52%), Gaps = 91/1212 (7%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 44 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 103
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 104 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 163
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 164 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 223
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 224 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 283
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQ 449
+ C CSH+CL P K + C CP G+ L + K+C + ELL+ AR+ DLR
Sbjct: 284 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 343
Query: 450 LTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT 509
L P T + VL + +++ +AI ++ +YW D E I R+ I+G+ V+
Sbjct: 344 LDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 402
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYW 569
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I ++P+ G MYW
Sbjct: 403 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 462
Query: 570 CSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
WG++ KIE A +DGS R +L + SL P GLA+D + ++YW + IE N DGT
Sbjct: 463 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 522
Query: 630 RKQTLIA-----LHHLKVMTKVVGLTD-----IDIFHRRRSKK----------------- 662
++ L+ + ++ V TD I+ H+R +++
Sbjct: 523 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 582
Query: 663 ------THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTD 716
++PC E NGGCSHLCL P+ G+RC CP G L D +TC P FLL S+
Sbjct: 583 VHRVIGSNPCAEENGGCSHLCLYRPQ-GLRCACPIGFELISDMKTCIV-PEAFLLFSRRA 640
Query: 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERL 776
IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R + + E +
Sbjct: 641 DIRRISLETNNNN-VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV 699
Query: 777 VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L PR++ +
Sbjct: 700 VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE 759
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHT 896
G M W +W +I+ A MDG+ R V + L IDY+ +LYW D +
Sbjct: 760 GFMYWTEWG----GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR-RLYWTDLDTNL 814
Query: 897 IEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKD---IVEFAQ 953
IE + + HP+ LT Y+YWTD I RANK ++ I
Sbjct: 815 IESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 874
Query: 954 VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSRTR 1012
LV + S N C S+NG CSHLCL P F C CP L+AD R+C + T
Sbjct: 875 YVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPT- 933
Query: 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTF 1072
FLL++ + I R+ +D + LP + DY +Y+ D R +R
Sbjct: 934 TFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA 992
Query: 1073 DMSDS----TRIKPIPLMNDTIRD-NFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV 1127
S + +P N I+ + ID + IY+ + INV R DG+ +++
Sbjct: 993 QEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 1052
Query: 1128 NDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186
+ P A+ V P +G +++++ L + SP KIE+ LDG+ R VL L+ P LA
Sbjct: 1053 KGEQDRPRAVVVNPEKGYMYFTN--LQERSP--KIERAALDGTEREVLFFSGLSKPIALA 1108
Query: 1187 IDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK--VAPYGLSVRQSPGKAFIVELYWTD 1244
+D + +LFWADS +RIE D G +R ++ + P GL+V F LYW D
Sbjct: 1109 LDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV-------FENWLYWID 1161
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFY 1304
+ + G+ V + D +K ++ ++ +PCAQDNGGCSH+C
Sbjct: 1162 KQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL-QEYRQHPCAQDNGGCSHICLV 1220
Query: 1305 KGRTKGYVCGCP 1316
KG C CP
Sbjct: 1221 KGDGTTR-CSCP 1231
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/1212 (34%), Positives = 631/1212 (52%), Gaps = 91/1212 (7%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 44 TIVVGGLEDAAAVDFVFGHGLIYWSDVSEEAIKRTEFNKSESVQNVVVSGLLSPDGLACD 103
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 104 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 163
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R VI+ I+WPNGLT+D++E +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 164 ERAGMDGSSRFVIINTEIYWPNGLTLDYQERKLYWADAKLNFIHKSNLDGTNRQAVVKGS 223
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW+T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 224 LPHPFALTLFEDTLYWTDWNTHSILACNKYTGEGLREIHSNIFSPMDIHAFSQQRQPNAT 283
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQ 449
+ C CSH+CL P K + C CP G+ L + K+C + ELL+ AR+ DLR
Sbjct: 284 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLMENGKTCKDGATELLLLARRTDLRRIS 343
Query: 450 LTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT 509
L P T + VL + +++ +AI ++ +YW D E I R+ I+G+ V+
Sbjct: 344 LDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 402
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYW 569
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I ++P+ G MYW
Sbjct: 403 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 462
Query: 570 CSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
WG++ KIE A +DGS R +L + SL P GLA+D + +YW + IE N DGT
Sbjct: 463 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGTIYWGDAKTDKIEVMNTDGT 522
Query: 630 RKQTLIA-----LHHLKVMTKVVGLTD-----IDIFHRRRSKK----------------- 662
++ L+ + ++ V TD I+ H+R +++
Sbjct: 523 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATS 582
Query: 663 ------THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTD 716
++PC E+NGGCSHLCL P+ G+RC CP G L D +TC P FLL S+
Sbjct: 583 VHRVIGSNPCAEDNGGCSHLCLYRPQ-GLRCACPIGFELIGDMKTCIV-PEAFLLFSRRA 640
Query: 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERL 776
IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R + + E +
Sbjct: 641 DIRRISLETNNNN-VAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV 699
Query: 777 VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L PR++ +
Sbjct: 700 VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE 759
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHT 896
G M W +W +I+ A MDG+ R V + L IDY+ +LYW D +
Sbjct: 760 GFMYWTEWG----GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR-RLYWTDLDTNL 814
Query: 897 IEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKD---IVEFAQ 953
IE + + HP+ LT Y+YWTD I RANK ++ I
Sbjct: 815 IESSDMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 874
Query: 954 VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSRTR 1012
LV + + N C S+NG CSHLCL P F C CP L+AD R+C S
Sbjct: 875 YVMDILVFHSSRQAGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC-SAPS 933
Query: 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTF 1072
FLL++ + I R+ +D + LP + DY +Y+ D R ++R
Sbjct: 934 TFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNSIRKA 992
Query: 1073 --DMSDSTRIKPIPLMNDTIRD---NFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV 1127
D + + N + + ID + IY+ + I+V R DG+ +++
Sbjct: 993 HEDGGQGFNVVANSVANQNLEIQPYDLSIDIYSRYIYWTCEATNVIDVTRLDGRSVGVVL 1052
Query: 1128 NDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186
+ P AI V P +G +++++ L + SP KIE+ LDG+ R VL L+ P LA
Sbjct: 1053 KGEQDRPRAIVVNPEKGYMYFTN--LQERSP--KIERAALDGTEREVLFFSGLSKPIALA 1108
Query: 1187 IDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK--VAPYGLSVRQSPGKAFIVELYWTD 1244
+D K +LFWADS +RIE D G +R ++ + P GL+V F LYW D
Sbjct: 1109 LDSKLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV-------FENWLYWID 1161
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFY 1304
+ + G+ V + D +K ++ ++ +PCAQDNGGCSH+C
Sbjct: 1162 KQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL-QEYRQHPCAQDNGGCSHICLV 1220
Query: 1305 KGRTKGYVCGCP 1316
KG C CP
Sbjct: 1221 KGDGTTR-CSCP 1231
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/1214 (33%), Positives = 618/1214 (50%), Gaps = 97/1214 (7%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN-------------------THIVHTGMQSVGSLSV 212
T + L + AVD+ + K + W +IV +G+ S L+
Sbjct: 55 TIVASGLEDAAAVDFQFSKGAVYWTDVSEEAIKQTYLNQTGAAAQNIVISGLVSPDGLAC 114
Query: 213 DWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
DWV ++WTD+ R+E +L+G +RK+L ++D+PRA+ + P +++WTDWG+ P+
Sbjct: 115 DWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAHGYMYWTDWGEAPR 174
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITK 332
IER MDGS RK+I+ +I+WPNGLTID EE +LYW +AK FI ++LDGS RQ+V+
Sbjct: 175 IERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFRQKVVEG 234
Query: 333 GLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNY 392
L HPF +TL D ++WTDW T+SI + NK+TG K + S L+ PM+I+ RQP +
Sbjct: 235 SLTHPFALTLSGDTLYWTDWQTRSIHACNKWTGEQRKEILSALYSPMDIQVLSQERQPPF 294
Query: 393 QSHCAPK--VCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRIS 448
+ C CSH+CL P + ++C CP G+ L + K+C EE+L+ AR+ DLR
Sbjct: 295 HTPCEEDNGGCSHLCLLSPREPFYSCACPTGVQLQDNGKTCKTGAEEVLLLARRTDLRRI 354
Query: 449 QLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHN 508
L P T + VL V +++ +AI ++ +YW D E I RA+++G+ ++
Sbjct: 355 SLDTPDFT-DIVLQVGDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTE 413
Query: 509 TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMY 568
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I ++P+ G+MY
Sbjct: 414 INDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMY 473
Query: 569 WCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDG 628
W WG+ KIE A +DG RH+L + SL P GLA+DL+ +LYW + IE N+DG
Sbjct: 474 WTDWGENPKIECANLDGRDRHVLVNTSLGWPNGLALDLQEGKLYWGDAKTDKIEVINIDG 533
Query: 629 TRKQTLIA----------------------------LHHLKVMTKVV-----GLTDIDIF 655
T+++TL+ +H +K V+ L +
Sbjct: 534 TKRKTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAV 593
Query: 656 HRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQT 715
+ + T+PC + NGGCSHLC P+ +C CP G L D +TC P FL+ +
Sbjct: 594 NVAKVVGTNPCADGNGGCSHLCFFTPR-ATKCGCPIGLELLSDMKTCII-PEAFLVFTSR 651
Query: 716 DKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRER 775
I +ISL+ + +PL +K +++D D N +IYW+D+S KTI R + + E
Sbjct: 652 ATIHRISLETN-NNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEH 710
Query: 776 LVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYG 835
++ L+ E +AVD +G+ +YW D I V+ +DG+ +VL W +L PRS+ +
Sbjct: 711 VIEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPT 770
Query: 836 LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKH 895
G + W +W RI A MDGTN +V + L IDY+D +LYW D +
Sbjct: 771 KGYIYWTEWG----GKPRIVRAFMDGTNCMTLVDKVGRANDLTIDYADQ-RLYWTDLDTN 825
Query: 896 TIEYKTLATGRAKRAYAVQ-SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKD---IVEF 951
IE + G+ + A +P+ LT Y+YWTD I RA+K ++ I
Sbjct: 826 MIESSNM-LGQERMVIADDLPYPFGLTQYSDYIYWTDWNLHSIERADKTSGRNRTLIQGH 884
Query: 952 AQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRT 1011
LV + N C +NG C LCL P C C + L R+C S
Sbjct: 885 LDFVMDILVFHSSRQDGLNDCVHSNGQCGQLCLAIPGGHRCGCASHYTLDPSSRNC-SPP 943
Query: 1012 REFLLYTSRFGVIRRISLDTADLLP-VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLR 1070
FLL++ +F + R I D L P + LP + +Y IY+ D R R
Sbjct: 944 STFLLFSQKFAISRMIPDD--QLSPDLVLPLHGLRNVKAINYDPLDKFIYWVDGRQNIKR 1001
Query: 1071 TFDMSDSTRIKPIP---LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV 1127
D + P L D + ID + +++ +TINV R DG +++
Sbjct: 1002 AKDDGTQPSMLTSPSQSLSPDRQPHDLSIDIYSRTLFWTCEATNTINVHRLDGDAMGVVL 1061
Query: 1128 -NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186
D +P AIAV RG +++++ + D++ KIE+ LDG+ R VL L P L
Sbjct: 1062 RGDRDKPRAIAVNAERGYMYFTN--MQDHA--AKIERASLDGTEREVLFTTGLIRPVALV 1117
Query: 1187 IDFKQRRLFWADSTNKRIEYCDFFGRSRKIV--ISKVAPYGLSVRQSPGKAFIVELYWTD 1244
+D +LFW D+ KRIE CD G +R + + V P GL+V LYW D
Sbjct: 1118 VDNALGKLFWVDADLKRIESCDLSGANRLTLEDANIVQPVGLTVLGR-------HLYWID 1170
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAIS--ASKQLTWNPCAQDNGGCSHLC 1302
+ +I R + TG ++ I A+ + ++ + +PCA+DNGGCSH+C
Sbjct: 1171 RQQQ--MIERVEKTTGDKRTR-VQGRVTHLTGIHAVEEVSLEEFSAHPCARDNGGCSHIC 1227
Query: 1303 FYKGRTKGYVCGCP 1316
KG C CP
Sbjct: 1228 IAKGDGTPR-CSCP 1240
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/1219 (34%), Positives = 622/1219 (51%), Gaps = 107/1219 (8%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN-------------------THIVHTGMQSVGSLSV 212
T ++ L + AVD+ + K + W ++V +G+ S L+
Sbjct: 56 TIVVSGLEDAAAVDFQFSKGAVYWTDVSEEAIKQTYLNQTGAAVQNVVISGLVSPDGLAC 115
Query: 213 DWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
DWV ++WTD+ R+E +L+G +RK+L ++D+PRA+ + P +++WTDWG+TP+
Sbjct: 116 DWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAHGYMYWTDWGETPR 175
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITK 332
IER MDGS RK+I+ +I+WPNGLTID EE +LYW +AK FI ++LDGS RQ+V+
Sbjct: 176 IERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIHRANLDGSFRQKVVEG 235
Query: 333 GLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNY 392
L HPF +TL D ++WTDW T+SI + NK TG K + S L+ PM+I+ RQP +
Sbjct: 236 SLTHPFALTLSGDTLYWTDWQTRSIHACNKRTGGKRKEILSALYSPMDIQVLSQERQPFF 295
Query: 393 QSHCAPK--VCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRIS 448
+ C CSH+CL P++ +TC CP G+ L + ++C EE+L+ AR+ DLR
Sbjct: 296 HTRCEEDNGGCSHLCLLSPSEPFYTCACPTGVQLQDNGRTCKAGAEEVLLLARRTDLRRI 355
Query: 449 QLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHN 508
L P T + VL V +++ +AI ++ +YW D E I RA+++G+ ++
Sbjct: 356 SLDTPDFT-DIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTE 414
Query: 509 TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMY 568
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR IA++P+ G+MY
Sbjct: 415 INDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIALHPVMGLMY 474
Query: 569 WCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDG 628
W WG+ KIE A +DG R +L + SL P GLA+DL+ +LYW + IE N+DG
Sbjct: 475 WTDWGENPKIECANLDGQERRVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEVINVDG 534
Query: 629 TRKQTLIA----------------------------LHHLKVMTKVV-----GLTDIDIF 655
T+++TL+ +H +K V+ L +
Sbjct: 535 TKRRTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAV 594
Query: 656 HRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQT 715
+ + T+PC + NGGCSHLC P RC CP G L D +TC P FL+ +
Sbjct: 595 NVAKVVGTNPCADRNGGCSHLCFFTPH-ATRCGCPIGLELLSDMKTCIV-PEAFLVFTSR 652
Query: 716 DKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRER 775
I +ISL+ + +PL +K +++D D N +IYW+D+S KTI R + + E
Sbjct: 653 AAIHRISLETN-NNDVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEH 711
Query: 776 LVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYG 835
+V L+ E +AVD +G+ +YW D I V+ +DG+ +VL W +L PRS+ +
Sbjct: 712 VVEFGLDYPEGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPT 771
Query: 836 LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKH 895
G + W +W RI A MDGTN +V + L IDY+D +LYW D +
Sbjct: 772 KGYIYWTEWG----GKPRIVRAFMDGTNCMTLVDKVGRANDLTIDYADQ-RLYWTDLDTN 826
Query: 896 TIEYKTLATGRAKRAYAVQ-SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKD---IVEF 951
IE + G+ + A HP+ LT Y+YWTD I RA+K ++ I
Sbjct: 827 MIESSNM-LGQERVVIADDLPHPFGLTQYSDYIYWTDWNLHSIERADKTSGRNRTLIQGH 885
Query: 952 AQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRT 1011
LV + N C NNG C LCL P C C + L R+C T
Sbjct: 886 LDFVMDILVFHSSRQDGLNDCMHNNGQCGQLCLAIPGGHRCGCASHYTLDPSSRNCSPPT 945
Query: 1012 REFLLYTSRFGVIRRISLD--TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNL 1069
FLL++ + + R I D + DL+ LP + DY IY+ D R
Sbjct: 946 -TFLLFSQKSAISRMIPDDQHSPDLI---LPLHGLRNVKAIDYDPLDKFIYWVDGRQNIK 1001
Query: 1070 RTFDMSDSTRIKPIPLMN-------DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122
R D D T +P L + D + ID + +++ +TINV R G+
Sbjct: 1002 RAKD--DGT--QPFVLTSLSQGQNPDRQPHDLSIDIYSRTLFWTCEATNTINVHRLSGEA 1057
Query: 1123 KKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAF 1181
+++ D +P AI V RG L++++ + D + KIE+ LDG+ R VL L
Sbjct: 1058 MGVVLRGDRDKPRAIVVNAERGYLYFTN--MQDRA--AKIERAALDGTEREVLFTTGLIR 1113
Query: 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV--ISKVAPYGLSVRQSPGKAFIVE 1239
P L +D +LFW D+ KRIE CD G +R + + V P GL++ GK
Sbjct: 1114 PVALVVDNTLGKLFWVDADLKRIESCDLSGANRLTLEDANIVQPLGLTIL---GK----H 1166
Query: 1240 LYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAIS--ASKQLTWNPCAQDNGG 1297
LYW D + +I R + TG I+ I A+ + ++ + +PCA+DNGG
Sbjct: 1167 LYWIDRQQQ--MIERVEKTTGDKRTR-IQGRVAHLTGIHAVEEVSLEEFSAHPCARDNGG 1223
Query: 1298 CSHLCFYKGRTKGYVCGCP 1316
CSH+C KG C CP
Sbjct: 1224 CSHICIAKGDGTPR-CSCP 1241
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust.
Identities = 430/1422 (30%), Positives = 666/1422 (46%), Gaps = 179/1422 (12%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHCILKTWLCD 79
C + CI W CD + DCE DE C + C P H C T C+ LCD
Sbjct: 1112 CKDSARCISKAWVCDGDNDCEDNSDEENCESLA----CRPPSHPCANNTSVCLPPDKLCD 1167
Query: 80 GIPDCSLGEDE---------------RNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFP 124
G DC G DE NC+ SC E P I+ +
Sbjct: 1168 GNDDCGDGSDEGELCDQCSLNNGGCSHNCSVAPGEGIVCSCPLGMELGPDNHTCQIQSYC 1227
Query: 125 LHTVRAPRK---DCFSKKYLC-DGKKHCPRGEEGPD-----------ERHCPKRVSLSNK 169
++ +K + FS K C +G P GE RH +R+ L
Sbjct: 1228 AKHLKCSQKCDQNKFSVKCSCYEGWVLEPDGESCRSLDPFKPFIIFSNRHEIRRIDLHKG 1287
Query: 170 KYTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVHTGMQSVG 208
Y+ ++ L N +A+D+H ++ L W ++ G+ +
Sbjct: 1288 DYSVLVPGLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEVVIQYGLATPE 1347
Query: 209 SLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWG 268
L+VDW+ ++W ++ ++E LDG R L+A +I+ PRA+ + PRD +FWTDW
Sbjct: 1348 GLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAIALDPRDGILFWTDWD 1407
Query: 269 KT-PKIERVEMDGSNRKVILTE--NIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSR 325
+ P+IE M G+ R+ + E + WPNGLT+D+ E R+ W +A+ I S+ DGS
Sbjct: 1408 ASLPRIEAASMSGAGRRTVHRETGSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGSG 1467
Query: 326 RQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRS 383
+V+ + L HPF +TLY V+WTDW T +++ ANK+TG N+ V P +++
Sbjct: 1468 HMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTGHNVTVVQRTNTQPFDLQV 1527
Query: 384 YHPHRQPNYQSHC----APKVCSHICLPNKHR-FTCQCPLGLTLSPDNKSCSESPEELLI 438
YHP RQP + C CSH+CL N +R +C CP + L DN +C E ++ L+
Sbjct: 1528 YHPSRQPMAPNPCEANGGQGPCSHLCLINYNRTVSCACPHLMKLHKDNTTCYEF-KKFLL 1586
Query: 439 YARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
YARQ ++R L P + V ++ +V + +++ +YW+DV I RA ING
Sbjct: 1587 YARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQRVYWSDVRTQAIKRAFING 1646
Query: 499 TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN--WIEVSNLDGTYPTLLFWQNLSEPR 556
T V+ + G+A+DW + L+WT + N I V+ LDG++ + Q L +P
Sbjct: 1647 TGVETVVSADLPNAHGLAVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVV-QGLEQPH 1705
Query: 557 DIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616
+ V+P+ G +Y W D I MA MDGS+R +L S K P GLAID S+LYW +
Sbjct: 1706 GLVVHPLRGKLY---WTDGDNISMANMDGSNRTLLFS-GQKGPVGLAIDFPESKLYWISS 1761
Query: 617 GLKTIEFTNLDGTRKQTLIALHH-------LKVM-------------------------- 643
G TI NLDG+ + + A+ L +M
Sbjct: 1762 GNHTINRCNLDGSGLEVIDAMRSQLGKATALAIMGDKLWWADQVSEKMGTCSKADGSGSV 1821
Query: 644 ------TKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLRE 697
T V+ + D + K T+PC+ NNG CS LCL + C+C AG LR
Sbjct: 1822 VLRNSTTLVMHMKVYDESIQLDHKGTNPCSVNNGDCSQLCLPTSETTRSCMCTAGYSLRS 1881
Query: 698 DRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSD 757
++ C E FLL S + IR I LD + ++P+ + +D +N+ IYW D
Sbjct: 1882 GQQAC-EGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAENDTIYWVD 1940
Query: 758 ISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAK 817
+ TI R + D T RE +V N + R E IAVD I IYWTD I V+ ++G
Sbjct: 1941 MGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFRY 2000
Query: 818 VLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSC 876
V+ L +PR+I VH G + W +W + RIE + +DGT R V + WP+
Sbjct: 2001 VVISQGLDKPRAITVHPEKGYLFWTEWGQYP----RIERSRLDGTERVVLVNVSISWPNG 2056
Query: 877 LAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSH--PYTLTVLDYYVYWTDVQH 934
+++DY D KLYW D IE L TG + ++ ++++V + ++YW+D H
Sbjct: 2057 ISVDYQDG-KLYWCDARTDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRTH 2115
Query: 935 S--KIYRANKYDVKDIVEFAQVDRPWLVRAAQNISF--------PNACGSNNGGCSHLCL 984
+ I R +K + D V R + ++I N C NGGC LCL
Sbjct: 2116 ANGSIKRGSKDNATDSVPL----RTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQLCL 2171
Query: 985 -RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISL-DTADLLPVTLPF- 1041
R CAC G +L+ D SC +LLY+ R +++ I L D +L PF
Sbjct: 2172 YRGRGQRACACAHG-MLAEDGASC-REYAGYLLYSERT-ILKSIHLSDERNLNAPVQPFE 2228
Query: 1042 -PEYMSSIF---FDYHY-----SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092
PE+M ++ FDY + N I+F+D+ GN++ + S RI + +
Sbjct: 2229 DPEHMKNVIALAFDYRAGTSPGTPNRIFFSDIHFGNIQQINDDGSRRITIVENVGSVEGL 2288
Query: 1093 NFVIDWVANNIY---YIDSQM--HTINVARSDGQHKK--ILVNDLMEPLAIAVYPRRGLL 1145
+ W + +Y Y S + HT++ R ++ I ++ P A + + L+
Sbjct: 2289 AYHRGW--DTLYWTSYTTSTITRHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNLM 2346
Query: 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205
F+++W N I + L G+ L+E+D+ PN LAID + +L+++D+T +IE
Sbjct: 2347 FWTNW----NEQHPSIMRAALSGANVLTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIE 2402
Query: 1206 YCDFFGRSRKIVISK--VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
C++ G R +++ V P+GL+V + ++WTDW +V A + + +
Sbjct: 2403 RCEYDGSHRYVILKSEPVHPFGLAV-------YGEHIFWTDWVRRAVQRANKHVGS---N 2452
Query: 1264 VHLIRSN--QEDFLNIKAISASKQLTWNPCAQDNGGCSHLCF 1303
+ L+R + Q+ I + + +PC +NGGC LC
Sbjct: 2453 MKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGGCQDLCL 2494
|
Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 429/1423 (30%), Positives = 660/1423 (46%), Gaps = 181/1423 (12%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHCILKTWLCD 79
C + CI W CD + DCE DE C + C P H C T C+ LCD
Sbjct: 1113 CKDSARCISKAWVCDGDSDCEDNSDEENCEALA----CRPPSHPCANNTSVCLPPDKLCD 1168
Query: 80 GIPDCSLGEDER-----------NCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTV 128
G DC G DE C+ C + + P E+GS+ + +
Sbjct: 1169 GKDDCGDGSDEGELCDQCSLNNGGCSHNCSVAPGEG-IVCSCPLGMELGSDNHTCQIQSY 1227
Query: 129 RAPRKDC--------FSKKYLC-DGKKHCPRGEEGPD-----------ERHCPKRVSLSN 168
A C FS K C +G P GE RH +R+ L
Sbjct: 1228 CAKHLKCSQKCDQNKFSVKCSCYEGWVLEPDGESCRSLDPFKPFIIFSNRHEIRRIDLHK 1287
Query: 169 KKYTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVHTGMQSV 207
Y+ ++ L N +A+D+H ++ L W ++ G+ +
Sbjct: 1288 GDYSVLVPGLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEVVIQYGLATP 1347
Query: 208 GSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDW 267
L+VDW+ ++W ++ ++E LDG R L+A +I+ PRA+ + PRD +FWTDW
Sbjct: 1348 EGLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTLLAGDIEHPRAIALDPRDGILFWTDW 1407
Query: 268 GKT-PKIERVEMDGSNRKVILTE--NIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGS 324
+ P+IE M G+ R+ I E + WPNGLT+D+ E R+ W +A+ I S+ DGS
Sbjct: 1408 DASLPRIEAASMSGAGRRTIHRETGSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGS 1467
Query: 325 RRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
+V+ + L HPF +TLY V+WTDW T +++ ANK+TG N+ V P +++
Sbjct: 1468 GHMEVLRGHEFLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTGHNVTVVQRTNTQPFDLQ 1527
Query: 383 SYHPHRQPNYQSHCAPK----VCSHICLPNKHR-FTCQCPLGLTLSPDNKSCSESPEELL 437
YHP RQP + C CSH+CL N +R +C CP + L DN +C E ++ L
Sbjct: 1528 VYHPSRQPMAPNPCEANGGRGPCSHLCLINYNRTVSCACPHLMKLHKDNTTCYEF-KKFL 1586
Query: 438 IYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHIN 497
+YARQ ++R L P + V ++ +V + +++ +YW+DV I RA IN
Sbjct: 1587 LYARQMEIRGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQRVYWSDVRTQAIKRAFIN 1646
Query: 498 GTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN--WIEVSNLDGTYPTLLFWQNLSEP 555
GT V+ + G+A+DW + L+WT + N I V+ LDG++ + Q L +P
Sbjct: 1647 GTGVETVVSADLPNAHGLAVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVV-QGLEQP 1705
Query: 556 RDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWAN 615
+ V+P+ G +Y W D I MA MDGS+ H L K P GLAID S+LYW +
Sbjct: 1706 HGLVVHPLRGKLY---WTDGDNISMANMDGSN-HTLLFSGQKGPVGLAIDFPESKLYWIS 1761
Query: 616 VGLKTIEFTNLDGTR------------KQTLIALHHLKV--------------------- 642
G TI NLDG+ K T +A+ K+
Sbjct: 1762 SGNHTINRCNLDGSELEVIDTMRSQLGKATALAIMGDKLWWADQVSEKMGTCNKADGSGS 1821
Query: 643 ------MTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLR 696
T V+ + D + + T+PC+ NNG CS LCL + C+C AG LR
Sbjct: 1822 VVLRNSTTLVMHMKVYDESIQLEHEGTNPCSVNNGDCSQLCLPTSETTRSCMCTAGYSLR 1881
Query: 697 EDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWS 756
++ C E FLL S + IR I LD + ++P+ + +D +N+ IYW
Sbjct: 1882 SGQQAC-EGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAENDTIYWV 1940
Query: 757 DISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNA 816
D+ TI R + D T RE +V N + R E IAVD I IYWTD I V+ ++G
Sbjct: 1941 DMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFR 2000
Query: 817 KVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPS 875
V+ L +PR+I VH G + W +W RIE + +DGT R V + WP+
Sbjct: 2001 YVVISQGLDKPRAITVHPEKGYLFWTEWGHYP----RIERSRLDGTERVVLVNVSISWPN 2056
Query: 876 CLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSH--PYTLTVLDYYVYWTDVQ 933
+++DY KLYW D IE L TG + ++ ++++V + ++YW+D
Sbjct: 2057 GISVDYQGG-KLYWCDARMDKIERIDLETGENREVVLSSNNMDMFSVSVFEDFIYWSDRT 2115
Query: 934 HS--KIYRANKYDVKDIVEFAQVDRPWLVRAAQNISF--------PNACGSNNGGCSHLC 983
H+ I R K + D V R + ++I N C NGGC LC
Sbjct: 2116 HANGSIKRGCKDNATDSVPL----RTGIGVQLKDIKVFNRDRQKGTNVCAVANGGCQQLC 2171
Query: 984 L-RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISL-DTADLLPVTLPF 1041
L R CAC G +L+ D SC +LLY+ R +++ I L D +L PF
Sbjct: 2172 LYRGGGQRACACAHG-MLAEDGASC-REYAGYLLYSERT-ILKSIHLSDERNLNAPVQPF 2228
Query: 1042 --PEYMSSIF---FDYHY-----SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091
PE+M ++ FDY + N I+F+D+ GN++ + S R + +
Sbjct: 2229 EDPEHMKNVIALAFDYRAGTSPGTPNRIFFSDIHFGNIQQINDDGSGRTTIVENVGSVEG 2288
Query: 1092 DNFVIDWVANNIY---YIDSQM--HTINVARSDGQHKK--ILVNDLMEPLAIAVYPRRGL 1144
+ W + +Y Y S + HT++ R ++ I ++ P A + + L
Sbjct: 2289 LAYHRGW--DTLYWTSYTTSTITRHTVDQTRPGAFERETVITMSGDDHPRAFVLDECQNL 2346
Query: 1145 LFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204
+F+++W N I + L G+ L+E+D+ PN LAID + +L+++D+T +I
Sbjct: 2347 MFWTNW----NELHPSIMRAALSGANVLTLIEKDIRTPNGLAIDHRAEKLYFSDATLDKI 2402
Query: 1205 EYCDFFGRSRKIVISK--VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQW 1262
E C++ G R +++ V P+GL+V + ++WTDW +V A + +
Sbjct: 2403 ERCEYDGSHRYVILKSEPVHPFGLAV-------YGEHIFWTDWVRRAVQRANKYVGS--- 2452
Query: 1263 DVHLIRSN--QEDFLNIKAISASKQLTWNPCAQDNGGCSHLCF 1303
D+ L+R + Q+ I + + +PC +NGGC LC
Sbjct: 2453 DMKLLRVDIPQQPMGIIAVANDTNSCELSPCRINNGGCQDLCL 2495
|
Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 424/1433 (29%), Positives = 675/1433 (47%), Gaps = 182/1433 (12%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHCILKTWLCD 79
C + CI W CD + DCE DE C C P H C T C+ LCD
Sbjct: 1110 CKDSARCISKAWVCDGDSDCEDNSDEENCESLV----CKPPSHTCANNTSICLPPEKLCD 1165
Query: 80 GIPDCSLGEDERNCNKTC---DAQKEFSC-------MKLAEPRPTEVGSNIKYFPLHTVR 129
G DC G DE C + +C + + P E+G++ K + +
Sbjct: 1166 GSDDCGDGSDEGELCDQCSLNNGGCSHNCTVAPGEGIVCSCPLGMELGADNKTCQIQSYC 1225
Query: 130 APRKDCFSK----KYLCDGKKHC-------PRGEEGPD-----------ERHCPKRVSLS 167
A C K KY + K C P GE RH +R+ L
Sbjct: 1226 AKHLKCSQKCEQDKY--NVKCSCYEGWMLEPDGESCRSLDPFKPFIIFSNRHEIRRIDLH 1283
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVHTGMQS 206
Y+ ++ L N +A+D+H ++ L W ++ G+ +
Sbjct: 1284 RGDYSVLVPGLRNTIALDFHLNQSSLYWTDVVEDKIYRGKLLENGALTSFEVVIQYGLAT 1343
Query: 207 VGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTD 266
L+VDW+ ++W ++ ++E LDG R L+A +I+ PRA+ + PR +FWTD
Sbjct: 1344 PEGLAVDWIAGNIYWVESNLDQIEVAKLDGTMRTTLLAGDIEHPRAIALDPRYGILFWTD 1403
Query: 267 WGKT-PKIERVEMDGSNRKVILTE--NIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDG 323
W + P+IE M G+ R+ I E + WPNGLT+D+ E R+ W +A+ I S+ DG
Sbjct: 1404 WDASLPRIEAASMSGAGRRTIHKETGSGGWPNGLTVDYLEKRILWIDARSDAIYSALYDG 1463
Query: 324 SRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381
+ +V+ + L HPF +TLY V+WTDW T +++ ANK+TG N+ V P ++
Sbjct: 1464 TGHIEVLRGHEYLSHPFAVTLYGGEVYWTDWRTNTLAKANKWTGHNVTVVQRTNTQPFDL 1523
Query: 382 RSYHPHRQPNYQSHC----APKVCSHICLPNKHR-FTCQCPLGLTLSPDNKSCSESPEEL 436
+ YHP RQP + C CSH+CL N +R +C CP + L DN +C E ++
Sbjct: 1524 QVYHPSRQPLAPNPCEANGGKGPCSHLCLINYNRTLSCACPHLMKLDKDNTTCYEF-KKF 1582
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHI 496
L+YARQ ++R + P + V ++ +V + +++ +YW+DV I RA I
Sbjct: 1583 LLYARQMEIRGVDIDNPYYNYIISFTVPDIDNVTVVDYDAVEQRIYWSDVRTQTIKRAFI 1642
Query: 497 NGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN--WIEVSNLDGTYPTLLFWQNLSE 554
NGT V+ + G+++DW + L+WT + N I V+ LDG++ + Q L +
Sbjct: 1643 NGTGVETVVSADLPNAHGLSVDWVSRNLFWTSYDTNKKQINVARLDGSFKNAVI-QGLDK 1701
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
P + V+P+ G +Y W D I +A MDGS+R +L ++ + P GLAID S+LYW
Sbjct: 1702 PHCLVVHPLHGKLY---WTDGDNISVANMDGSNRTLLFTNQ-RGPVGLAIDYPESKLYWI 1757
Query: 615 NVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGL------------------------- 649
+ G TI NLDG+ + ++A+ ++K L
Sbjct: 1758 SSGNGTINRCNLDGSDLEVIVAVK--SQLSKATALAIMGDKLWWADQASERMGTCNKKDG 1815
Query: 650 TDIDIFHRR--------------RSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695
T++ + + ++PC+ NNG CS LCL + C+C AG L
Sbjct: 1816 TEVTVLRNSTTLVMLMKVYDESIQQAGSNPCSVNNGDCSQLCLPTSETSRSCMCTAGYSL 1875
Query: 696 REDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYW 755
+ +++C E FLL S + IR I LD + ++P+ + +D +N+ IYW
Sbjct: 1876 KSGQQSC-EGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAENDTIYW 1934
Query: 756 SDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN 815
D+ TI R + D T RE +V N + R E IAVD I IYWTD I V+ ++G
Sbjct: 1935 VDMGLSTISRAKRDQTWREDVVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSF 1994
Query: 816 AKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWP 874
V+ L +PR+I VH G + W +W + RIE + +DGT R V + WP
Sbjct: 1995 RYVVISQGLDKPRAITVHPEKGYLFWTEWGQYP----RIERSRLDGTERMVLVNVSISWP 2050
Query: 875 SCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSH--PYTLTVLDYYVYWTDV 932
+ +++DY D KLYW D IE L TG + + ++++V + Y+YW+D
Sbjct: 2051 NGISVDYEDG-KLYWCDARTDKIERIDLETGENREVVLSSDNMDMFSVSVFEDYIYWSDR 2109
Query: 933 QHS--KIYRANKYDVKDIVEFAQ------VDRPWLVRAAQNISFPNACGSNNGGCSHLCL 984
H+ I R +K + + V D RA Q + N C NNGGC LCL
Sbjct: 2110 THANGSIKRGSKDNATESVSLRTGIGVQLKDIKVFNRARQKGT--NVCAQNNGGCQQLCL 2167
Query: 985 -RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISL-DTADLLPVTLPF- 1041
R TCAC G +LS D SC +LLY+ R +++ I L D +L PF
Sbjct: 2168 FRGGGRRTCACAHG-MLSEDGVSCRDYD-GYLLYSERT-ILKSIHLSDENNLNAPIKPFE 2224
Query: 1042 -PEYMSSIF---FDYHY---SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNF 1094
E+M ++ FDY Y N I+++D+ GN++ + + R + + +
Sbjct: 2225 DAEHMKNVIALAFDYRYGTKGSNRIFYSDIHFGNIQQINDDGTGRRTIVENVGSVEGLAY 2284
Query: 1095 VIDWVANNIY---YIDSQM--HTINVARSDGQHKKILVNDLME--PLAIAVYPRRGLLFY 1147
W + +Y Y S + HT++ +R ++ ++ + P A + + L+F+
Sbjct: 2285 HRGW--DTLYWTSYTTSTITRHTVDQSRLGAFERETVITMSGDDHPRAFVLDECQNLMFW 2342
Query: 1148 SHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYC 1207
++W N I + L G+ +++++D+ PN LAID + +++++D+T +IE C
Sbjct: 2343 TNW----NEQHPSIMRATLSGANVLIIIDQDIRTPNGLAIDHRAEKIYFSDATLDKIERC 2398
Query: 1208 DFFGRSRKIVISK--VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265
++ G R +++ V P+GL+V + ++WTDW +V A + T D+
Sbjct: 2399 EYDGSHRHVILKSEPVHPFGLAV-------YGDYIFWTDWVRRAVQRANKYVGT---DMK 2448
Query: 1266 LIRSN--QEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYV-CGC 1315
L+R + Q+ I + + +PC +NGGC LC KG+V C C
Sbjct: 2449 LLRVDIPQQPMGIIAVANDTDSCELSPCRVNNGGCQDLCLLT--PKGHVNCSC 2499
|
Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1332 | ||||||
| 189236723 | 2041 | PREDICTED: similar to AGAP000037-PA [Tri | 0.958 | 0.625 | 0.410 | 0.0 | |
| 270005136 | 2042 | hypothetical protein TcasGA2_TC007146 [T | 0.958 | 0.625 | 0.410 | 0.0 | |
| 242021136 | 2101 | low-density lipoprotein receptor, putati | 0.947 | 0.600 | 0.411 | 0.0 | |
| 345481629 | 1996 | PREDICTED: low-density lipoprotein recep | 0.942 | 0.629 | 0.401 | 0.0 | |
| 357627556 | 1915 | putative low-density lipoprotein recepto | 0.950 | 0.661 | 0.394 | 0.0 | |
| 195044271 | 2095 | GH12853 [Drosophila grimshawi] gi|193901 | 0.957 | 0.608 | 0.380 | 0.0 | |
| 321459730 | 1830 | hypothetical protein DAPPUDRAFT_327801 [ | 0.949 | 0.691 | 0.404 | 0.0 | |
| 157127000 | 2036 | low-density lipoprotein receptor (ldl) [ | 0.948 | 0.620 | 0.388 | 0.0 | |
| 327259681 | 1907 | PREDICTED: low-density lipoprotein recep | 0.950 | 0.663 | 0.395 | 0.0 | |
| 363734400 | 1944 | PREDICTED: low-density lipoprotein recep | 0.950 | 0.651 | 0.388 | 0.0 |
| >gi|189236723|ref|XP_001814959.1| PREDICTED: similar to AGAP000037-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1101 bits (2847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1449 (41%), Positives = 839/1449 (57%), Gaps = 172/1449 (11%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCD- 79
KCN +G CIP +++CD + DCE EDE C S + CSPDEH C+ G CILKTW+CD
Sbjct: 440 KCN-SGKCIPERYRCDKQQDCEEKEDEANC-DYSLARSCSPDEHTCSNGACILKTWVCDG 497
Query: 80 ---------------------------------------------GIPDCSLGEDERNCN 94
G DC GEDE C
Sbjct: 498 YNDCPQGEDESKCEIVCDESKFSCSGHGINDTATEFCISRKHVCDGKKDCPKGEDESGCP 557
Query: 95 KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDC-------FSKKYLCDGKKH 147
+ +K +C +L + P + + + C ++ +C +
Sbjct: 558 TKRECEKHTNCTQLC-ITTVDGRKGCDCIPGYKIASDGITCEDINECLYATDPVCSQTCN 616
Query: 148 CPRGE----------EGPDERHCP----------------KRVSLSNKKYTAIIRNLHNV 181
+G PD R C ++VSLSN KYT I++ LHN
Sbjct: 617 NTQGSFRCGCMTGYVLRPDLRTCKAIGDPPTLLFANRIDIRQVSLSNAKYTPILKGLHNA 676
Query: 182 LAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFWTDT 224
+A+DYHY K L+ W+ T I+ G+QS G +++DW+HD +FWTD+
Sbjct: 677 IALDYHYDKKLIFWSDVSMDVIRRATMNGTEITDIIKWGLQSPGGVALDWIHDLIFWTDS 736
Query: 225 AARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRK 284
RR+E LDGK+R I+ N+IDKPRA+ VHP +A+VFWTDWG PKIER EMDGSNR+
Sbjct: 737 GTRRIEVASLDGKHRAIIAGNDIDKPRAITVHPGEAYVFWTDWGPNPKIERAEMDGSNRR 796
Query: 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYE 344
I+ E++FWPNGLT+D+ +R+YW +AKH+ IE++ +G+ R++VI+KGLPHPF +T++E
Sbjct: 797 SIINESVFWPNGLTLDYTSNRIYWADAKHNVIETALFNGNDRRKVISKGLPHPFALTIFE 856
Query: 345 DFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK--VCS 402
D ++WTDWHTKSIS+ANK TG ++T+HS LHFPM+I SYHP RQP Y + C C+
Sbjct: 857 DAIYWTDWHTKSISTANKATGAGLRTIHSHLHFPMDIHSYHPQRQPKYSNRCGGNNGGCA 916
Query: 403 HICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSP-TFETVL 461
H+CLPN+ +TC C +G L D KSC + PE+LLI+AR+KDLRI L + V+
Sbjct: 917 HLCLPNRKSYTCVCRMGQKLKSDKKSC-QKPEKLLIFARKKDLRIKHLDNNAVHQHSLVI 975
Query: 462 PVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRT 521
P+ VKS VAIAW+S +D ++W DVE INRA NG+ Q ++ N PAG+A+DW T
Sbjct: 976 PLDGVKSAVAIAWDSESDYIFWTDVERDTINRALWNGSNQEVIVYSNIVTPAGLALDWLT 1035
Query: 522 NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMA 581
NK+YWT+++ IEV+ +G +LL W NL +PRDI V+PIGG MYW W + KIE A
Sbjct: 1036 NKIYWTDADTTRIEVAKTNGEMRSLLVWDNLYKPRDIVVDPIGGYMYWSDWAETPKIERA 1095
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA----- 636
MDG+ R ++ S +L P GLAID ++YWA+ G K IE +N DG++++T+I
Sbjct: 1096 AMDGTMRSVIVSSNLTWPNGLAIDHSAGKIYWADGGTKAIECSNFDGSKRKTIIGPELPH 1155
Query: 637 -----------------------------LHHLKVMTKVVGLTDIDIFHRRRSKKTHPCN 667
L+ + + + L D+ +FHR R PC
Sbjct: 1156 PFGLDVFENYIYWTDWRTLTIERANKNTGLNRTVLASDITDLMDVRVFHRNRKMIKTPCG 1215
Query: 668 ENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEY 727
NGGC+HLCL+ PK+ C CP G L ED +TC+ P FL+++ + IRQISLDV Y
Sbjct: 1216 TKNGGCTHLCLLKPKNNHTCACPTGIKLEEDGKTCANGPINFLILAHRNVIRQISLDVPY 1275
Query: 728 RYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESI 787
+VLPL LK+V SVDVD K IYW D +E I++ D + ++++ L E I
Sbjct: 1276 IADVVLPLPPLKLVTSVDVDRKTGEIYWIDQAEDVIQKSTRDGQNSKLIIMHKLQTPEGI 1335
Query: 788 AVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRT 847
AVD+ GRKIYWTD ++ V+++DG N KVLF NL PR+I +HY GLM W+DW +
Sbjct: 1336 AVDSTGRKIYWTDGERNSVEVAELDGSNRKVLFSTNLDNPRAITLHYHHGLMFWSDWGKK 1395
Query: 848 RLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGR 906
+IE+A MDGT R T+ ++WP+ LAID +LYW D HTIE L
Sbjct: 1396 A----KIEVAQMDGTKRKALITDGLVWPNGLAIDRP-TERLYWNDAKLHTIESSDLKGHD 1450
Query: 907 AKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQN 965
K HPY L V+ ++YWTD Q ++RA+K + D + ++D VR+ Q+
Sbjct: 1451 RKIIVTEAPHPYGLVVVGNHIYWTDWQTQALHRADKTNGTDKAKIREKLDGLMDVRSVQS 1510
Query: 966 ISFP-NACGSNNGGCSHLCLRNPTNFTCACPTGILLS-ADRRSCFSRTREFLLYTSRFGV 1023
+ NACG NNGGCSHLCLRN F+CACPTGI +S A+ + C + +LL +RF
Sbjct: 1511 DNIAENACGGNNGGCSHLCLRNSGGFSCACPTGIKMSKANPKVCEKQPSTYLLLATRF-A 1569
Query: 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI 1083
+ RISLDT DL VTLP + + I D+H+ K LIY+ D+ + +++ +M + + + I
Sbjct: 1570 LNRISLDTDDLWDVTLPIEDVNNVIDVDFHWEKRLIYYTDIGNNVIQSVNMFNLSDTRNI 1629
Query: 1084 PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRR 1142
N + D +DWVANNIY+ ++ I VA+ DG ++K +V+ +L +P +IAV+PR+
Sbjct: 1630 VHSNLSSPDGIAVDWVANNIYWTNTGNKVIEVAKIDGSNRKTIVSTNLQDPRSIAVFPRK 1689
Query: 1143 GLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST-- 1200
G L+++ WG KIE+ +LDGS R +L+ E L+FP LAIDF +RL+W D+T
Sbjct: 1690 GYLYWTDWG------KPKIERSFLDGSGRRILINEQLSFPIGLAIDFVDKRLYWIDATLN 1743
Query: 1201 NKRIEYCDFFGRSRKIV-ISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259
+RIE D GR+R ++ I + P+ L+ F +YWTDW + +AR +
Sbjct: 1744 EERIETSDLHGRNRVVLDIPQTHPFSLT-------QFGEHIYWTDW--VHKTVARADKTS 1794
Query: 1260 GQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDL 1319
G+ DV ++RS E + + ++ S+Q WNPCA +NGGC +LCF+K K Y CGCP+D
Sbjct: 1795 GK-DVVIVRSYLEAAMGVTMVTESRQTGWNPCAANNGGCPYLCFFK--QKNYTCGCPND- 1850
Query: 1320 EPNEECFEG 1328
+ +C EG
Sbjct: 1851 --HVKCVEG 1857
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270005136|gb|EFA01584.1| hypothetical protein TcasGA2_TC007146 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1450 (41%), Positives = 839/1450 (57%), Gaps = 173/1450 (11%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCD- 79
KCN +G CIP +++CD + DCE EDE C S + CSPDEH C+ G CILKTW+CD
Sbjct: 440 KCN-SGKCIPERYRCDKQQDCEEKEDEANC-DYSLARSCSPDEHTCSNGACILKTWVCDG 497
Query: 80 ---------------------------------------------GIPDCSLGEDERNCN 94
G DC GEDE C
Sbjct: 498 YNDCPQGEDESKCEIVCDESKFSCSGHGINDTATEFCISRKHVCDGKKDCPKGEDESGCP 557
Query: 95 KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDC-------FSKKYLCDGKKH 147
+ +K +C +L + P + + + C ++ +C +
Sbjct: 558 TKRECEKHTNCTQLC-ITTVDGRKGCDCIPGYKIASDGITCEDINECLYATDPVCSQTCN 616
Query: 148 CPRGE----------EGPDERHCP----------------KRVSLSNKKYTAIIRNLHNV 181
+G PD R C ++VSLSN KYT I++ LHN
Sbjct: 617 NTQGSFRCGCMTGYVLRPDLRTCKAIGDPPTLLFANRIDIRQVSLSNAKYTPILKGLHNA 676
Query: 182 LAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFWTDT 224
+A+DYHY K L+ W+ T I+ G+QS G +++DW+HD +FWTD+
Sbjct: 677 IALDYHYDKKLIFWSDVSMDVIRRATMNGTEITDIIKWGLQSPGGVALDWIHDLIFWTDS 736
Query: 225 AARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRK 284
RR+E LDGK+R I+ N+IDKPRA+ VHP +A+VFWTDWG PKIER EMDGSNR+
Sbjct: 737 GTRRIEVASLDGKHRAIIAGNDIDKPRAITVHPGEAYVFWTDWGPNPKIERAEMDGSNRR 796
Query: 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYE 344
I+ E++FWPNGLT+D+ +R+YW +AKH+ IE++ +G+ R++VI+KGLPHPF +T++E
Sbjct: 797 SIINESVFWPNGLTLDYTSNRIYWADAKHNVIETALFNGNDRRKVISKGLPHPFALTIFE 856
Query: 345 DFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK--VCS 402
D ++WTDWHTKSIS+ANK TG ++T+HS LHFPM+I SYHP RQP Y + C C+
Sbjct: 857 DAIYWTDWHTKSISTANKATGAGLRTIHSHLHFPMDIHSYHPQRQPKYSNRCGGNNGGCA 916
Query: 403 HICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSP-TFETVL 461
H+CLPN+ +TC C +G L D KSC + PE+LLI+AR+KDLRI L + V+
Sbjct: 917 HLCLPNRKSYTCVCRMGQKLKSDKKSC-QKPEKLLIFARKKDLRIKHLDNNAVHQHSLVI 975
Query: 462 PVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRT 521
P+ VKS VAIAW+S +D ++W DVE INRA NG+ Q ++ N PAG+A+DW T
Sbjct: 976 PLDGVKSAVAIAWDSESDYIFWTDVERDTINRALWNGSNQEVIVYSNIVTPAGLALDWLT 1035
Query: 522 NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMA 581
NK+YWT+++ IEV+ +G +LL W NL +PRDI V+PIGG MYW W + KIE A
Sbjct: 1036 NKIYWTDADTTRIEVAKTNGEMRSLLVWDNLYKPRDIVVDPIGGYMYWSDWAETPKIERA 1095
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI------ 635
MDG+ R ++ S +L P GLAID ++YWA+ G K IE +N DG++++T+I
Sbjct: 1096 AMDGTMRSVIVSSNLTWPNGLAIDHSAGKIYWADGGTKAIECSNFDGSKRKTIIEGPELP 1155
Query: 636 -----------------------------ALHHLKVMTKVVGLTDIDIFHRRRSKKTHPC 666
L+ + + + L D+ +FHR R PC
Sbjct: 1156 HPFGLDVFENYIYWTDWRTLTIERANKNTGLNRTVLASDITDLMDVRVFHRNRKMIKTPC 1215
Query: 667 NENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVE 726
NGGC+HLCL+ PK+ C CP G L ED +TC+ P FL+++ + IRQISLDV
Sbjct: 1216 GTKNGGCTHLCLLKPKNNHTCACPTGIKLEEDGKTCANGPINFLILAHRNVIRQISLDVP 1275
Query: 727 YRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTES 786
Y +VLPL LK+V SVDVD K IYW D +E I++ D + ++++ L E
Sbjct: 1276 YIADVVLPLPPLKLVTSVDVDRKTGEIYWIDQAEDVIQKSTRDGQNSKLIIMHKLQTPEG 1335
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSR 846
IAVD+ GRKIYWTD ++ V+++DG N KVLF NL PR+I +HY GLM W+DW +
Sbjct: 1336 IAVDSTGRKIYWTDGERNSVEVAELDGSNRKVLFSTNLDNPRAITLHYHHGLMFWSDWGK 1395
Query: 847 TRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATG 905
+IE+A MDGT R T+ ++WP+ LAID +LYW D HTIE L
Sbjct: 1396 KA----KIEVAQMDGTKRKALITDGLVWPNGLAIDRP-TERLYWNDAKLHTIESSDLKGH 1450
Query: 906 RAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQ 964
K HPY L V+ ++YWTD Q ++RA+K + D + ++D VR+ Q
Sbjct: 1451 DRKIIVTEAPHPYGLVVVGNHIYWTDWQTQALHRADKTNGTDKAKIREKLDGLMDVRSVQ 1510
Query: 965 NISFP-NACGSNNGGCSHLCLRNPTNFTCACPTGILLS-ADRRSCFSRTREFLLYTSRFG 1022
+ + NACG NNGGCSHLCLRN F+CACPTGI +S A+ + C + +LL +RF
Sbjct: 1511 SDNIAENACGGNNGGCSHLCLRNSGGFSCACPTGIKMSKANPKVCEKQPSTYLLLATRF- 1569
Query: 1023 VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP 1082
+ RISLDT DL VTLP + + I D+H+ K LIY+ D+ + +++ +M + + +
Sbjct: 1570 ALNRISLDTDDLWDVTLPIEDVNNVIDVDFHWEKRLIYYTDIGNNVIQSVNMFNLSDTRN 1629
Query: 1083 IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPR 1141
I N + D +DWVANNIY+ ++ I VA+ DG ++K +V+ +L +P +IAV+PR
Sbjct: 1630 IVHSNLSSPDGIAVDWVANNIYWTNTGNKVIEVAKIDGSNRKTIVSTNLQDPRSIAVFPR 1689
Query: 1142 RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST- 1200
+G L+++ WG KIE+ +LDGS R +L+ E L+FP LAIDF +RL+W D+T
Sbjct: 1690 KGYLYWTDWG------KPKIERSFLDGSGRRILINEQLSFPIGLAIDFVDKRLYWIDATL 1743
Query: 1201 -NKRIEYCDFFGRSRKIV-ISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258
+RIE D GR+R ++ I + P+ L+ F +YWTDW + +AR
Sbjct: 1744 NEERIETSDLHGRNRVVLDIPQTHPFSLT-------QFGEHIYWTDW--VHKTVARADKT 1794
Query: 1259 TGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
+G+ DV ++RS E + + ++ S+Q WNPCA +NGGC +LCF+K K Y CGCP+D
Sbjct: 1795 SGK-DVVIVRSYLEAAMGVTMVTESRQTGWNPCAANNGGCPYLCFFK--QKNYTCGCPND 1851
Query: 1319 LEPNEECFEG 1328
+ +C EG
Sbjct: 1852 ---HVKCVEG 1858
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242021136|ref|XP_002431002.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212516226|gb|EEB18264.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1422 (41%), Positives = 825/1422 (58%), Gaps = 160/1422 (11%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKK--CSPDEHRCTTG----- 69
P CN G CI W CDN DC GEDE C Q + C+ + ++
Sbjct: 525 PDEFSCN-NGNCILKTWLCDNVQDCSKGEDEENCEQTCHETQFNCAAHQKNDSSAILIRK 583
Query: 70 ------HCILKTWLCDGIPDC----------------------------SLGEDERNC-- 93
+CI + +CDG DC S G D +C
Sbjct: 584 SPKPLINCIGRKHVCDGKKDCPKGEDERNCPKKKKCDDDSKCQQLCVVLSNGRDACSCEA 643
Query: 94 -------NKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKK 146
N TCD E C +P +++ +N T+ + C L +
Sbjct: 644 GFILSSDNHTCDDIDE--CKFEYDPVCSQICNN-------TIGSFTCLCRKGYVLRPDGR 694
Query: 147 HCPRGEEGPD----ERHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWN------ 196
C + P R ++VSL+N +YTAI++ L N +A+DYHY K + W+
Sbjct: 695 TCKAIGDPPTLIFANRIDIRQVSLNNLRYTAILKGLQNAIAIDYHYNKGWIYWSDVSMDV 754
Query: 197 -----------THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIAN 245
+ ++ G++S G +++DW+HD ++WTD+ RRVE LDGK+R ++ +N
Sbjct: 755 IKRAKVNGTEKSDVIKWGLESPGGVAIDWIHDLLYWTDSGTRRVEVATLDGKHRSVIASN 814
Query: 246 NIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDR 305
++DKPRA++VHP A VFWTDWG PKIE EMDGSNRK I+TE +FWPNGL +D+ DR
Sbjct: 815 DLDKPRAIVVHPGLAVVFWTDWGPKPKIEVSEMDGSNRKSIITEGVFWPNGLALDYAIDR 874
Query: 306 LYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTG 365
LYWT+AKHH IES+ DGS R++++TKGLPHPF ITL+E+ ++WTDWHTKSI+SANK TG
Sbjct: 875 LYWTDAKHHAIESAKFDGSERRKIVTKGLPHPFAITLFEEAIYWTDWHTKSIASANKDTG 934
Query: 366 RNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV--CSHICLPNKHRFTCQCPLGLTLS 423
K VH+GLHFPM+I S+H RQP++ +HC CSH+CLP K + C CPLGL L
Sbjct: 935 MGYKIVHTGLHFPMDIHSFHSQRQPSFTNHCGNNTGGCSHLCLPTKSSYRCACPLGLHLH 994
Query: 424 PDNKSCSESPEELLIYARQKDLRISQLTEPSPT--FETVLPVMNVKSVVAIAWESANDSL 481
D KSC+++PE+LLI+AR KD+R+ QL + + V+P+ V+S VA+A++S +++
Sbjct: 995 KDKKSCTDTPEKLLIFARNKDIRLRQLGQGKEVGIIDMVIPLDQVRSAVALAFDSDKNTI 1054
Query: 482 YWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDG 541
YW DVE+ I+++ +NG+ Q VI N + P+G+AIDW T KLYW ++ N IE+SNL+G
Sbjct: 1055 YWTDVESHRISKSFLNGSNQEVVISSNLESPSGLAIDWVTKKLYWADAGTNRIELSNLNG 1114
Query: 542 TYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTG 601
+ LL W L +PRDI V PIGG MYW WG KIE AGM+GS+R IL S L P G
Sbjct: 1115 SMRALLIWDGLDKPRDIVVEPIGGYMYWSDWGKTPKIERAGMNGSNRKILFSKDLIWPNG 1174
Query: 602 LAIDLENSRLYWANVGLKTIEFTNLDGTRKQTL--IALHHLKVMT--------------- 644
LAID E SR+YW + G K IE++ LDG+ + TL + H +T
Sbjct: 1175 LAIDHEKSRIYWVDGGTKAIEYSRLDGSGRTTLRSTEVRHPFGLTLFGKNIYWTDWETNS 1234
Query: 645 -----------------KVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIA-PKDGIR 686
++ GL D+ +FHR K PC NGGCSHLCLIA P +
Sbjct: 1235 IHMADKNTGKNGAILRDRISGLMDVRVFHREFQKFHSPCLIENGGCSHLCLIAPPPEKYS 1294
Query: 687 CVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDV 746
C CP G L D +TC+ P+ L+ + IR+ISLDV Y VLPL +K VDV
Sbjct: 1295 CACPIGIKLLRDGKTCAPGPTNSLIFAHRIDIREISLDVPYLVDTVLPLPPMKNTKGVDV 1354
Query: 747 DTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTI 806
D K IYW+D +E I R D +R++++ L+ + I VD+ GRKIYWTD +I
Sbjct: 1355 DRKTGDIYWTDTTEDVIMRASRDGYNVDRIIIDGLDTADGIVVDSTGRKIYWTDAGRNSI 1414
Query: 807 MVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV 866
+ ++DG N KVL W +L PR+I +HY GLM W+DW + RIE A MDG NR V
Sbjct: 1415 EICELDGTNRKVLIWSDLENPRAITLHYHHGLMFWSDWGKKA----RIEQADMDGKNRKV 1470
Query: 867 F-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ-SHPYTLTVLD 924
++ WP+ LAID +LYW D + TIE L GR ++ + HPY L ++
Sbjct: 1471 LIADDLDWPNGLAIDRPGG-RLYWNDGKRKTIESSDLE-GRGRKIIVREVPHPYGLVIVG 1528
Query: 925 YYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWL-----VRA--AQNISFPNACGSNNG 977
++YWTD + ++RA+K + D +QV R L +R+ A+NI+ NACGS+NG
Sbjct: 1529 THMYWTDWKTQSVHRADKRNGSD----SQVIRKGLEGLMDIRSVQAENIA-ENACGSDNG 1583
Query: 978 GCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPV 1037
GCSHLCLR P F CACPTGI+L D ++C FLL+ +R ++ R+SLDT +L V
Sbjct: 1584 GCSHLCLRKPEGFACACPTGIVLQEDSKTCNHLPSTFLLFATRSKLV-RVSLDTEELWDV 1642
Query: 1038 TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID 1097
TLP + +SI D+H++K +I+++D+ +R +M + + K I N T D +D
Sbjct: 1643 TLPILDIQNSISVDFHWNKQIIFYSDVNLDVIRGVNMKNLSENKIIIKENLTTPDGIAVD 1702
Query: 1098 WVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNS 1156
W++ N+Y+ D+ + V++ DG+ +K++ N L EP AI V+P RG L+++ WG +S
Sbjct: 1703 WLSENLYWTDTGRKVLEVSKIDGKCRKVIFNKGLDEPRAITVFPGRGYLYWTDWG---DS 1759
Query: 1157 PTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-K 1215
P +IE+ ++DGS R V++ DL FPN LA+D+ +L+WAD+ RIE+ D GR+R +
Sbjct: 1760 P--RIERSFMDGSQRRVIIGADLGFPNGLAVDYTALKLYWADALKDRIEFSDLHGRNRVQ 1817
Query: 1216 IVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFL 1275
+V + P+GL++ F +YWTDW + SV R TG+ D IRS E +
Sbjct: 1818 LVPAATHPFGLTI-------FEEHIYWTDWYSKSV--ERADKTTGR-DRMPIRSELESVM 1867
Query: 1276 NIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
IKA+S+ +QL W+PC ++NG CSHLC + R K Y+C CPD
Sbjct: 1868 EIKAVSSKRQLGWSPCQENNGFCSHLCLF--RRKDYICACPD 1907
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345481629|ref|XP_001605666.2| PREDICTED: low-density lipoprotein receptor-related protein 4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1422 (40%), Positives = 805/1422 (56%), Gaps = 166/1422 (11%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTT------------GH-- 70
TG CIP W CD DC GEDE C C C T GH
Sbjct: 506 TGVCIPRTWVCDGVPDCSTGEDERGCQMG-----CELTHFLCKTPTLAVNDTKPIPGHWM 560
Query: 71 ----------CILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNI 120
C+ +CDG+ DC +DE NC K + + C +L ++
Sbjct: 561 LLNPRDQHRVCVSMKHVCDGVADCPEKDDEENCPKKVECTENDHCSQLCVVT-SDNQRAC 619
Query: 121 KYFPLHTVRAPRKDC-------FSKKYLCD-------GKKHC---PRGEEGPDERHCP-- 161
P + + K C F K +C G C P PD R C
Sbjct: 620 SCDPGYVLAKDNKTCEDIDECKFEKDPVCSQVCKNTKGSFVCECAPGYVLRPDLRSCKAL 679
Query: 162 --------------KRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNT---------- 197
++VS++ KYT++++ LHN +A+DYHYK+ L+ W+
Sbjct: 680 GANPTLLLANRVDIRQVSITGPKYTSVLKGLHNAIALDYHYKRGLIYWSDVSMDVIRKVY 739
Query: 198 -------HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKP 250
+ G++S G +++DW+HD +FWTD+ RRVE LD + R +L+++++DKP
Sbjct: 740 VNGTDADDFIRWGLESPGGIAIDWIHDLLFWTDSGTRRVEVITLDTRVRHVLVSSDLDKP 799
Query: 251 RAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTE 310
RA+ VHP +V+WTDWG PKIER +MDGS R ++T+NI+WPNGLTID+ DR+YW +
Sbjct: 800 RAIAVHPHYGYVYWTDWGPNPKIERADMDGSKRTALITDNIYWPNGLTIDYITDRIYWID 859
Query: 311 AKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKT 370
AKH IES+ + G R++V+T+GL HPF IT++ED V+WTDWH KSIS ANK GR KT
Sbjct: 860 AKHRVIESASMRGDDRKKVVTRGLHHPFAITVFEDAVYWTDWHFKSISLANKNNGRGYKT 919
Query: 371 VHSGLHFPMNIRSYHPHRQPNYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKS 428
+HSGLHFPM++ SYHP RQP Y +HC CSH+CLPN ++C CP+GL + D K+
Sbjct: 920 IHSGLHFPMDLHSYHPQRQPEYINHCGENNGKCSHMCLPNSMGYSCVCPVGLKIKKDGKT 979
Query: 429 CSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVEN 488
C+ S + LL++AR+KDLR+ L + + F+ V+PV NV+S VA+ W + +D++YW DVE
Sbjct: 980 CAASADNLLLFARKKDLRLISLDQSAKAFDIVIPVDNVESAVALTWNADDDTIYWTDVEA 1039
Query: 489 GEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLF 548
I+RA I GT Q +I HN + PAG+A+DW T KLYWT++ N IE SNLDG+ +LL
Sbjct: 1040 DTISRASIGGTNQQAIIHHNLESPAGLAMDWITKKLYWTDAGTNRIECSNLDGSMRSLLI 1099
Query: 549 WQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLEN 608
++ L +PRDI VNPI G M+W WG+ KIE AGMDGS R L S SL P GLAID E
Sbjct: 1100 YEGLDKPRDIVVNPISGHMFWSDWGEKPKIERAGMDGSDRRDLISTSLTWPNGLAIDFEE 1159
Query: 609 SRLYWANVGLKTIEFTNLDGTRKQTLI-----------ALHHLKVM-------------- 643
RLYWA+ G IE+++LDG + T+I +H K+
Sbjct: 1160 KRLYWADGGTSKIEYSDLDGKHRTTIIQAPDTKHPFGLVIHKNKIYWTDWDTMSIHRADK 1219
Query: 644 ----------TKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDG-IRCVCPAG 692
+ + GL D+ +FHR R +PC+ NNG CSHLCL+AP RC CP G
Sbjct: 1220 DTGKSVTVIRSGITGLMDVRVFHRNRQMVENPCSRNNGNCSHLCLLAPAPKRYRCACPTG 1279
Query: 693 NLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEY 752
+L D +TC E P KFLL+S IR +SLD Y VLP+ +K V+ DVD +
Sbjct: 1280 LILNPDGKTCPEMPDKFLLMSHRIDIRVLSLDTNYTADTVLPIGHMKNVSGADVDMETGQ 1339
Query: 753 IYWSDISE---KTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVS 809
IYW+D + K I +V F+ + ++ ++ +S+ VD+IGRK+YWTD+ +I VS
Sbjct: 1340 IYWTDPGQLFTKVIRKVSFEGKNEDTVIDGCIDTVDSLVVDSIGRKLYWTDVGLNSIEVS 1399
Query: 810 DIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET 869
D+DGKN KVL W L PR++ +HY GL+ W+DW N RIE A MDG +R T
Sbjct: 1400 DLDGKNRKVLVWSGLDNPRAVALHYPAGLLFWSDWGH----NARIERADMDGEHREAVIT 1455
Query: 870 E-VIWPSCLAID-YSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYV 927
E + WP+ L+ID ++D ++YW D K IE L K HPY L V+ ++
Sbjct: 1456 EGLTWPNGLSIDLFAD--RIYWNDAKKKVIESSDLQGQDRKVIVEKVEHPYGLAVVGDFI 1513
Query: 928 YWTDVQHSKIYRANKYDVKD----------IVEFAQVDRPWLVRAAQNISFPNACGSNNG 977
YW+D Q + RA KYD K+ I++ VD+ +VR NACG NNG
Sbjct: 1514 YWSDWQEKALLRAKKYDGKNKKIMLSNLEGIMDLRLVDKK-MVRPE------NACGDNNG 1566
Query: 978 GCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPV 1037
GCSHLCLRNPT ++CACPTGI+++ D+++C S FLL ++ ++ R+SLDT ++ V
Sbjct: 1567 GCSHLCLRNPTGYSCACPTGIIINDDKKTCNSTPTNFLLLATKKTLV-RMSLDTPEMWEV 1625
Query: 1038 TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL-MNDTIRDNFVI 1096
LP Y ++ D+H+ K LI++ D+ +R +M D + K + +N + +
Sbjct: 1626 PLPVKHYHNAFSVDFHWEKQLIFYTDVDVKVIRRINMRDFSDDKVVVWGLNVSTPFRLAV 1685
Query: 1097 DWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNS 1156
DW+A+N+Y+ D + I V+R DG +K L+ +L EP ++ ++PR G ++++ WG +
Sbjct: 1686 DWLADNMYWTDLKHRMIEVSRLDGSCRKKLIENLKEPRSLTLFPREGYIYWAEWG---DQ 1742
Query: 1157 PTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-K 1215
P +I + LDGS R +V DL+ PN L+ID+ R+L+WAD+ RIE D GR R
Sbjct: 1743 P--RIGRANLDGSNRKSIVSTDLSLPNGLSIDYVARKLYWADALKDRIEMSDLHGRYRIA 1800
Query: 1216 IVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFL 1275
+V V +GLS + +YW DW +I R TG+ + + IR+ +
Sbjct: 1801 LVPEAVNAFGLS-------QYGNNIYWGDW--FKEMIERADKRTGK-NRNKIRTALDGTT 1850
Query: 1276 NIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
I+A+SA +Q W PCA +NGGCSHLCF+ K Y C CPD
Sbjct: 1851 EIRAVSAERQTGWTPCAVENGGCSHLCFFV--KKSYTCACPD 1890
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357627556|gb|EHJ77209.1| putative low-density lipoprotein receptor [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/1446 (39%), Positives = 811/1446 (56%), Gaps = 180/1446 (12%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLC-- 78
KC + G CIP +W+CD E DCE G+DE+ C + + C+ DE+ C CI KTWLC
Sbjct: 333 KC-KDGKCIPERWKCDAERDCEDGDDEVSC-EPHGVRNCTVDEYTCIDRRCISKTWLCDG 390
Query: 79 ------------------------------------------DGIPDCSLGEDERNC--- 93
DG+ DC G+DE C
Sbjct: 391 LRDCSNGEDELNCEVFCEKDQYMCKSIKSDAFRNCVNRKHVCDGMKDCPQGDDEEKCPTK 450
Query: 94 -----NKTCDAQ---------------------KEFSCMKLAE------PRPTEVGSNIK 121
+ C+ Q +SC + E P ++ SN
Sbjct: 451 RKCRPDDKCERQCITTFDGFPACACPIGYLLDNNGYSCQDIDECMYEQDPVCSQTCSN-- 508
Query: 122 YFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGP----DERHCPKRVSLSNKKYTAIIRN 177
T+ + C + L + C E P ++V L+ + Y +I++
Sbjct: 509 -----TLGSYMCGCMTGYVLRPDARSCKATGESPTLLFSNGVGIRQVWLTGENYMSILKG 563
Query: 178 LHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVF 220
LH +A+DYHYKKNL+ W T +V G+++ G L+VDW+HD +F
Sbjct: 564 LHKAMALDYHYKKNLVFWTENNMRVIRVAPLDSNNMTDVVRWGIETPGGLAVDWIHDLLF 623
Query: 221 WTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDG 280
WTD+ RRVE LDG R +L A+++DKPRA+ VHP DA VFWTDWG PKIER MDG
Sbjct: 624 WTDSGTRRVEVATLDGSQRAVLAASDVDKPRAIAVHPGDALVFWTDWGPNPKIERANMDG 683
Query: 281 SNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGI 340
NRK I+ NIFWPNGLTID+ E +YW +AKHH IE + +G R+++I KGLPHPF +
Sbjct: 684 DNRKSIIVHNIFWPNGLTIDYTESTIYWADAKHHVIEKASFNGLDRKRIINKGLPHPFAL 743
Query: 341 TLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV 400
TL+ED ++WTDWHTKSIS+ NK TG ++TVH+ L+ PM+I+S+HP RQ +Y++ C
Sbjct: 744 TLFEDAIYWTDWHTKSISTVNKKTGMGMQTVHASLYVPMDIQSFHPLRQRSYKNRCVNNG 803
Query: 401 -CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLT--EPSPTF 457
CSH+CLP TC+CP+G L D ++C E+PE+LL+YA +KD+R+ QL + +
Sbjct: 804 GCSHMCLPASSERTCRCPVGFNLHSDGRTCEETPEKLLLYAHRKDIRLKQLNPRKHMDSL 863
Query: 458 ETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAI 517
+ V+PV N+KS VA+ W+ ++S++W DVE IN+A +NG+ Q ++ N PAG+A
Sbjct: 864 DMVIPVENIKSAVALDWDHNSNSIFWTDVEKDTINKAFLNGSHQTIIVGSNLISPAGLAY 923
Query: 518 DWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHK 577
DW TNKLYWT++ N IEV+N +G+ TLL W+N+ +PRDI ++PIGGIMYW WG
Sbjct: 924 DWLTNKLYWTDAGTNRIEVANANGSMRTLLAWENIDKPRDIVLDPIGGIMYWSDWGSSPC 983
Query: 578 IEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA- 636
IE A MDG +R L + P GLA+DL N R+YW + G +TIE+ NLDGT + LI
Sbjct: 984 IERADMDGGNRQRLIFGDMTWPNGLALDLPNKRIYWTDGGNRTIEYANLDGTGRTVLIGQ 1043
Query: 637 -LHH--------------------LKVMTK------------VVGLTDIDIFHRRRSKKT 663
L H ++ K V GL D+ +FH+ R
Sbjct: 1044 DLTHPFGLDLYGDEVFWTDWNTQSIQAANKYTGKQRRTLGAGVEGLMDVRVFHKERMSSR 1103
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISL 723
+PC+ NNGGCSHLCL+ P G C CP G L D R C+ P FL+ + IR +SL
Sbjct: 1104 NPCSNNNGGCSHLCLLKPM-GRSCACPIGIKLSNDGRICTNGPINFLIFAHRVDIRIVSL 1162
Query: 724 DVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNR 783
DV Y +VLPL LK VDVD + IYW+D E+ I+R + E ++ L+
Sbjct: 1163 DVPYLVDVVLPLPALKNALGVDVDQRTGLIYWTDTGERKIKRANKEGHQNETIIGRGLHT 1222
Query: 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
+ IA+D+ GRKIYWTD +I V++++G N KVL W L PR+I +HY G M W+D
Sbjct: 1223 ADGIAIDSAGRKIYWTDGGRNSIEVAELNGTNRKVLVWTGLDSPRAIALHYDYGFMFWSD 1282
Query: 844 WSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902
W T+ +IE A MDG NR + + + WP+ LAID ++ +LYW D TIE
Sbjct: 1283 WG----TSAKIERADMDGKNRRIIVDNNIKWPNGLAIDRIES-RLYWNDAKVLTIESSNF 1337
Query: 903 ATGRAKRAYAVQ-SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQ-VDRPWLV 960
G +R Q +PY + ++ ++YWTD + ++RA+K + ++ ++ + ++ +
Sbjct: 1338 -NGHDRRTLLTQVPYPYGIVIVGQHIYWTDWKTKALHRADKSNGREQLKIRENLEGLMDI 1396
Query: 961 RAAQNIS-FPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADR----RSCFSRTREFL 1015
RA Q NACG NNGGCSHLCLR+P +TCACPTG+L + ++C FL
Sbjct: 1397 RAIQGDHILENACGKNNGGCSHLCLRSPQGYTCACPTGLLFKNESELNPKTCKKHPDNFL 1456
Query: 1016 LYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS 1075
++ +R G I ISLDT + +TLP + +S+ DYH+ + LI+F D+ +R+ DM
Sbjct: 1457 VFAAR-GSIALISLDTPEQWDITLPVKDIQNSVAVDYHWERKLIFFTDVYHNEIRSIDME 1515
Query: 1076 DSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLA 1135
+ + + I + +DW+ANNIY+ D+ + VAR DG +K L+ L EP A
Sbjct: 1516 NMSDSRVIVNTGLDTPNGLGVDWIANNIYWTDNDFKVVEVARLDGSSRKTLITGLTEPRA 1575
Query: 1136 IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLF 1195
+A++P +G L++S WG N IE+ LDGS R ++V DL FPN + ID+K RRL+
Sbjct: 1576 LALFPAKGFLYWSDWGESPN-----IERASLDGSQRRIIVNHDLGFPNGITIDYKDRRLY 1630
Query: 1196 WADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254
W D+ RI+ D G+ R +I + P+G++ F +YWTDW SV+ A
Sbjct: 1631 WTDALKDRIDTSDLNGQHRVQLIPEAKNPFGMT-------QFNNYIYWTDWYKKSVMRAD 1683
Query: 1255 EKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCG 1314
++ TG+ +V IR++ E + IKA+S+ KQ WNPC +DNGGCSHLC ++G YVC
Sbjct: 1684 KR--TGK-NVTAIRTDLEMVMEIKAVSSEKQHGWNPCKEDNGGCSHLCLFRGHD--YVCA 1738
Query: 1315 CPDDLE 1320
CPD +
Sbjct: 1739 CPDAFD 1744
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195044271|ref|XP_001991788.1| GH12853 [Drosophila grimshawi] gi|193901546|gb|EDW00413.1| GH12853 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1444 (38%), Positives = 796/1444 (55%), Gaps = 169/1444 (11%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASP--PKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CIP +W+CD E DC+ GEDE C +P P C PDE C G CIL+TWLCDG PD
Sbjct: 499 GTCIPKRWKCDKEQDCDGGEDENDCGNMNPEHPLTCGPDEFTCHNGRCILRTWLCDGYPD 558
Query: 84 CSLGEDERNCN--------------------------KTCDAQK-------EFSC---MK 107
CS EDE +C+ CD Q E +C K
Sbjct: 559 CSSAEDEVDCHLLCDAGQFLCPAKKNITNLKICVHQKHVCDGQNDCPLGEDEVNCPVEQK 618
Query: 108 LAEPRPTE------------VGSNIKYFPLHTVRAPRKDCFSKKYL----CDGKKHCPRG 151
EP+ E + Y ++T + D +YL C K H G
Sbjct: 619 CPEPKQCEQLCIRTARGRDECACRLGYL-MNTNKRNCTDIDECQYLTSPVCSQKCHNTMG 677
Query: 152 ------EEG----PDERHCP----------------KRVSLSNKKYTAIIRNLHNVLAVD 185
E G PD R C +RV+LSN +Y AI++ LHN +A+D
Sbjct: 678 SFVCSCEMGYILRPDLRTCKALGGAMTLLVANRWDIRRVTLSNNRYMAIVKGLHNAIALD 737
Query: 186 YHYKKNLLVWNT-----------------HIVHTGMQSVGSLSVDWVHDFVFWTDTAARR 228
+HY+K ++ W+ ++ G++S G ++VDWVHD +FWTD+ RR
Sbjct: 738 FHYRKGMMFWSDVSTDVIKMVYVNGTRVRDVIKWGLESPGGIAVDWVHDLLFWTDSGTRR 797
Query: 229 VEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILT 288
VE + G R +++++++DKPRA+++HP +A VFW+DWG PKIER MDGS R+VI++
Sbjct: 798 VEVANFQGNLRTVIVSSDLDKPRAIVIHPGEALVFWSDWGPNPKIERAHMDGSQRQVIIS 857
Query: 289 ENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVF 348
+ + WPNGL ID+ ++YW +AK H IE S+LDGS R +V++ LPHPF +T++ED ++
Sbjct: 858 KGVTWPNGLAIDYPNSKIYWADAKQHAIECSNLDGSERIKVLSSHLPHPFALTIFEDTMY 917
Query: 349 WTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK------VCS 402
WTDW+TK++S+ANK TG+ ++VH HFPM+I +YHP RQP+YQ C CS
Sbjct: 918 WTDWNTKTVSAANKITGKGFRSVHENFHFPMDIHAYHPARQPDYQDRCQKDRRGLRGGCS 977
Query: 403 HICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPS---PTFET 459
H+CLPN+ C CP+GL+L D K+C +P++L++ AR+KD+R+ QL S +
Sbjct: 978 HLCLPNRLSRRCGCPIGLSLKDDGKTCKSAPDKLVLVARRKDIRLRQLNTKSFGPNEVDM 1037
Query: 460 VLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDW 519
++P+ N+K VA+ W S D +YW DVE IN+AH+NG++Q V+ N P G+A+DW
Sbjct: 1038 IVPLDNLKHAVALDWCSETDFIYWTDVERSSINKAHLNGSYQQRVVHSNLVSPVGLALDW 1097
Query: 520 RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIE 579
T+KLYWT+ N IEV+ +G TLL W+ L +PRDI VNPI G+M+W WG+ IE
Sbjct: 1098 ITDKLYWTDPSTNRIEVATTNGKMRTLLVWEKLDKPRDIVVNPIDGLMFWSDWGEEAMIE 1157
Query: 580 MAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI---- 635
A MDG+ R I+AS L P GLAID + +LY+ + G KT+E N DG+ ++ +I
Sbjct: 1158 RANMDGASRVIIASKKLIWPNGLAIDYDQHKLYFVDGGTKTLENMNFDGSSRKVIINGLG 1217
Query: 636 ---------------------ALHHLKVMTKVVG--------LTDIDIFHRRRSKKTHPC 666
A+ K+ K V L DI +FHR R + + C
Sbjct: 1218 HPFGLDVSGGRVYWTDWDTKSAMSADKMTGKNVATVIANSSDLMDIRVFHRSRRRVYNAC 1277
Query: 667 NENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVE 726
++ NGGCSHLCL+ P C C G L+EDRRTCSE P+K++L + IRQISLD +
Sbjct: 1278 DKRNGGCSHLCLLNPT-SFTCACAVGVQLKEDRRTCSEGPTKYILFAHRIDIRQISLDFD 1336
Query: 727 YRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTES 786
+ +VLPL + ++DVD K YI+WSD E I D +++ L +
Sbjct: 1337 HLIDVVLPLPPISNAVALDVDQKTGYIFWSDTIENVIMSSSPDGLHVHKVIGESLENPDG 1396
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSR 846
+ VD+IGR IYW D TI V+ +DG++ V+ + +L PR + + Y GL+ W DW
Sbjct: 1397 LVVDSIGRTIYWADAGRHTIEVATLDGRHRHVIAYKDLESPRGLALDYEAGLLFWTDWGH 1456
Query: 847 TRLTNNRIEMAHMDGTNRA-VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATG 905
R +IE +H+DG R+ + + WP+ L++D + ++YWVD TI+
Sbjct: 1457 YR----KIERSHLDGNERSRIVTANLGWPNGLSLDLK-SKRIYWVDARLKTIDSCDYTGN 1511
Query: 906 RAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---KDIVEFAQVDRPWLVRA 962
+ K + HPY L + Y+YWTD + ++ A++ + +D++ V
Sbjct: 1512 QRKLIMSALHHPYALALTSDYIYWTDWKSKALHMADRRNTSAKRDVMTNIDGLMDIKVIV 1571
Query: 963 AQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRS-CFSRTREFLLYTSRF 1021
+ NAC NNGGCSHLCLRNP+ FTC CPTG+ L + + C + ++LL R
Sbjct: 1572 KHQLLTENACDLNNGGCSHLCLRNPSGFTCQCPTGLKLRENSTTICENLPNDYLLIALRS 1631
Query: 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK 1081
G I ISL++ D + V LP ++ D+H+ K+L++FAD+ +R ++ + T K
Sbjct: 1632 G-IGMISLNSGDYMDVVLPINGVHGAVVLDFHFRKSLLFFADVNLDIIRRVNLLNFTESK 1690
Query: 1082 PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKKILVNDLMEPLAIAVYP 1140
+ + +DWVA+N+Y+ D+ I VAR DG KK++ DL +P ++ ++P
Sbjct: 1691 VVVSTELLTPNGIAVDWVADNLYWSDTDRKLIEVARIDGSCRKKLITEDLGDPRSLIIHP 1750
Query: 1141 RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
+ LF+S W NSP +KIE+ +LDGS RT +V + FP L IDF RRL WAD+
Sbjct: 1751 SKAYLFWSDW----NSP-SKIERSFLDGSNRTAIVTSGVGFPTGLTIDFANRRLLWADAL 1805
Query: 1201 NKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259
I DF G+ R+ ++ P+GL++ +S +YWTDW SV ++
Sbjct: 1806 EDNIGQVDFNGKRRQTIVPYAPHPFGLTMFES-------NIYWTDWYNKSVYRSQRVPRM 1858
Query: 1260 GQWDVHLIRSNQEDFLNIKAISASKQL-TWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
G +R L+I+A+S +Q +WN CAQDNGGCSHLCFY R YVC CPD
Sbjct: 1859 GYSYPFEVRDALSGALDIRAVSQQRQAKSWNQCAQDNGGCSHLCFY--RAVDYVCACPDR 1916
Query: 1319 LEPN 1322
E +
Sbjct: 1917 PESD 1920
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321459730|gb|EFX70780.1| hypothetical protein DAPPUDRAFT_327801 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1393 (40%), Positives = 796/1393 (57%), Gaps = 128/1393 (9%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
+ G CI W CD E DC G+DE CP C D+ C+ C+ + +C+G
Sbjct: 265 GKNGPCISTSWVCDGETDCPDGQDEQNCPA----NHCGKDQFSCSNDTCVGFSRVCNGER 320
Query: 83 DCSLGEDERNC--NKTCDAQK--EFSCMKLAEP----------RPTEVGSNI-------- 120
DC GEDE +C K CDA + +C+ L+ R T G N
Sbjct: 321 DCPGGEDEFDCTIQKECDAGSRCQHTCLVLSNGTGACGCRSGFRLTSDGVNCVDVDECAT 380
Query: 121 ----KYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGP-----DERHCPKRVSLSNKKY 171
+TV C L K C + P R ++VSL ++Y
Sbjct: 381 ETYCSQLCTNTVGGFSCSCVDGYVLRPDKSSC-KALGQPVRLIFANRVDIRQVSLFEEEY 439
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN---------THIVHT--------GMQSVGSLSVDW 214
T++I L N +A+D+HY+K L++W+ H+ T G++S G ++VDW
Sbjct: 440 TSVIDGLQNAIALDFHYRKGLVIWSDVTLDAIKRAHLNGTAMPDAVWWGLKSPGGVAVDW 499
Query: 215 VHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIE 274
+HD ++WTD+ RR+E LDG R+ L+ N++KPRA+ VHP A V WTDWG P+IE
Sbjct: 500 IHDNLYWTDSGVRRIEVSLLDGTMRRTLVWENVEKPRAIAVHPGAAAVIWTDWGHQPRIE 559
Query: 275 RVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGL 334
R +MDGSNR++++TEN+ WPNGLTID+ D +YW +AKHH IES LDG+ R++V+ +GL
Sbjct: 560 RSDMDGSNRQILVTENLVWPNGLTIDYTVDHIYWADAKHHVIESVRLDGTGRRRVMERGL 619
Query: 335 PHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQS 394
PHPF IT++ED +FWTDWHTKSI ANK TG +I+TV + LHFPM+I S HP RQP Y +
Sbjct: 620 PHPFAITIFEDSLFWTDWHTKSIHQANKLTGHDIRTVRTNLHFPMDIHSIHPLRQPEYVN 679
Query: 395 HCAPK--VCSHICLPNKHRFTCQCPLGLTL-SPDNKSCSESPEELLIYARQKDLRISQLT 451
C CSH+CLPN+ +TC CP GL L +P+ ++C+ P ELLI+A++ +LR+ L
Sbjct: 680 RCGSNRGGCSHLCLPNRSSYTCACPPGLQLITPNGRTCTSQPGELLIFAQKSELRLFPLN 739
Query: 452 EPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKK 511
S + VLP+ V+S VA+ W+ A+ +++W DVE+ INRA NG+ Q ++ ++ +
Sbjct: 740 V-SGEVDHVLPLTGVRSAVALDWDGASQTIFWTDVESDVINRAFWNGSNQQTLVANDLES 798
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCS 571
PAG+A+DW T KLYWT++ N IEVSNLDGT +LL W L PRDI V+PIGG MYW
Sbjct: 799 PAGLAVDWVTKKLYWTDAGTNRIEVSNLDGTLRSLLIWDGLDRPRDIVVDPIGGYMYWTD 858
Query: 572 WGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRK 631
WG KIE AGMDGS R ++ +L P GLAID E RLYWA+ G K IE+ +LDG +
Sbjct: 859 WGQTPKIERAGMDGSQRSVIVISNLTWPNGLAIDHEGERLYWADGGTKAIEYASLDGKNR 918
Query: 632 QTLI-------------------------ALHHLK---------VMTKVVGLTDIDIFHR 657
LI A+H + + + L D+ ++H
Sbjct: 919 TVLIGAELPHPFGLALYENQIFWSDWDTAAIHSTDKLNAKRRTMIRSGLDDLMDVRVYHS 978
Query: 658 RRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTD 716
R C +NGGCSHLCL+AP G C CP G L DRRTC ++PS L+ SQ
Sbjct: 979 NRYSVPSLCQSHNGGCSHLCLLAPLPAGHSCACPTGIKLSADRRTCRQSPSTSLIFSQRS 1038
Query: 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVR----FDMTG 772
+R++SLD+ Y +VL L K V ++DVD ++ WSD ++ I R +
Sbjct: 1039 NLRRMSLDMPYLIDVVLDLPPQKNVVALDVDRVTGHLLWSDTTQDKIFRALPGGPLSASA 1098
Query: 773 RERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI-DGKNAKVLFWLNLYRPRSIV 831
E + N L+ E +AVD I RK+YWTD ++ V+++ DG + KVL W + +PR +V
Sbjct: 1099 VEVIAFN-LDTVEGLAVDEINRKLYWTDAGRSSLEVAELEDGGHRKVLIWTLMDKPRGLV 1157
Query: 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWV 890
+ + G + WADW + RIE A MDG NR V T++ WP+ L IDY+ N LYW
Sbjct: 1158 LSHSTGTLFWADWGK----QPRIEQADMDGRNRKVMVSTDLGWPNSLTIDYAAN-MLYWT 1212
Query: 891 DTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVE 950
D K TIE L+ + SHPY +TVLD Y+YWTD + + RA+K D
Sbjct: 1213 DARKKTIESCDLSGLHRREVLTGLSHPYGITVLDSYLYWTDWETKSLQRADKNTALDRST 1272
Query: 951 F-AQVDRPWLVRAAQNISF-PNACGSNNGGCSHLCLRNP--TNFTCACPTGILLSADRRS 1006
+D ++ S N CG+NNGGCSHLCLR+P ++C+CPTGIL+SAD +
Sbjct: 1273 IRVGLDNLMDIKEMDASSHRENPCGTNNGGCSHLCLRSPWGRGYSCSCPTGILMSADGST 1332
Query: 1007 CFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS 1066
C FLLY +R + ISLDTAD V L P ++I D+H+ + Y+ D+
Sbjct: 1333 CQPSPNSFLLYATR-NTLSSISLDTADQWDVALNVPGVHNAIGVDFHWGRQRFYYTDVYL 1391
Query: 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126
+R+ D + + ++ + N T D +DW+A+N+Y+ D+ + + +R DG ++KI+
Sbjct: 1392 DVIRSVDARNVSNVETLVSSNLTTPDGLAVDWLADNLYWTDAGRNVLEASRLDGTNRKII 1451
Query: 1127 V-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNEL 1185
+ + L EP A+AV+P+RGLL+++ WG + KIE+ +LDGS+R +V +L +PN L
Sbjct: 1452 IGSGLDEPRAVAVFPQRGLLYWTDWG-----QSHKIERSFLDGSHRVAIVTSELGWPNGL 1506
Query: 1186 AIDFKQRRLFWADSTNKRIEYCDFFGRSR-KIVISKVAPYGLSVRQSPGKAFIVELYWTD 1244
AID++ +RL+WAD+ RIE D GR R ++V P+GL+ Q G LYWTD
Sbjct: 1507 AIDYEGQRLYWADAQLDRIETSDLSGRFRVQLVQGATHPFGLT--QLGGF-----LYWTD 1559
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFY 1304
W + S I R TG+ ++R E + I+A++ KQL NPC+ NGGC+HLC +
Sbjct: 1560 WRSKS--IERVDKATGK-QRSVLRHGLEGLMEIRAVAREKQLGKNPCSTANGGCTHLCLF 1616
Query: 1305 KGRTKGYVCGCPD 1317
R YVC CPD
Sbjct: 1617 --RAISYVCACPD 1627
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157127000|ref|XP_001661035.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873056|gb|EAT37281.1| AAEL010712-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/1450 (38%), Positives = 798/1450 (55%), Gaps = 186/1450 (12%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP-QASPPKKCSPDEHRCTTGHCILKTWLCD 79
KC+ G CIP QW+CD++ DC GEDE CP + CSPDE C G CIL++W+CD
Sbjct: 445 KCD-DGDCIPVQWRCDDKQDCNNGEDEKGCPVDKLAGRTCSPDEFTCKDGRCILRSWVCD 503
Query: 80 ----------------------------------------------GIPDCSLGEDERNC 93
G DC GEDE C
Sbjct: 504 GTADCKRGEDEQDCEIKCEINQFACSSSSRNSSSDPLCINQKNVCDGHKDCVNGEDELRC 563
Query: 94 N--KTCDAQK--EFSCMKLAEPRP---TEVG----------SNIKYFPLHTVRAPRKDCF 136
C A E CM R +G ++I + + ++C
Sbjct: 564 PIVHRCGAHSSCEQQCMTAYSGREECKCRMGFLLHGNGYNCTDIDECKITSNPVCSQECI 623
Query: 137 SK--KYLCDGKKHCPRGEEGPDERHCP----------------KRVSLSNKKYTAIIRNL 178
+ Y CD K P PD R C ++VSLSN +YT+I++ L
Sbjct: 624 NTMGSYRCDCK---PGYVLRPDNRTCKAVGGAVKLLMANRADIRQVSLSNNQYTSIVKGL 680
Query: 179 HNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFW 221
N +A+DYHYKK+LL W ++ G++S G L+VDW+HD +FW
Sbjct: 681 PNAIALDYHYKKDLLFWTDVSIDVIKRSYLNGTGVKDVIKWGLESPGGLAVDWIHDLLFW 740
Query: 222 TDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGS 281
TD+ RRVE DGK R ++ AN++DKPRA+ VHP A +FWTDWG PKIER MDGS
Sbjct: 741 TDSGTRRVEVATFDGKLRAVIAANDLDKPRAIAVHPGQAIIFWTDWGTVPKIERAFMDGS 800
Query: 282 NRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGIT 341
R+ I++E+IFWPNGL ID+ +R+YW +AKH IES+D DG R+++++ LPHPF +T
Sbjct: 801 VRRTIVSESIFWPNGLAIDYTTNRIYWADAKH-VIESADFDGRGRKKILSNNLPHPFAMT 859
Query: 342 LYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV- 400
L+ED ++WTDWHT+++SSANK GR + VH GLHFPM+I+S+HP RQP+YQ+HC
Sbjct: 860 LFEDSMYWTDWHTRTVSSANKVNGRGYRIVHEGLHFPMDIQSFHPSRQPDYQNHCPLDSM 919
Query: 401 -----CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLT--EP 453
CSH+CLPN + C CP+GL+L D ++CS P++LL+ AR+KD+R+ QL +P
Sbjct: 920 GRRGGCSHLCLPNGNHRRCACPIGLSLKGDQRTCSNVPDKLLLIARKKDIRVRQLDSDDP 979
Query: 454 SPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPA 513
S + V+P+ +KS VAI W S + +YW DV I+RA ING+ Q +I+ N PA
Sbjct: 980 SKGVDMVVPLDGIKSNVAIDWCSQTNVIYWTDVGKSIISRAFINGSQQEAIIKSNLISPA 1039
Query: 514 GVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWG 573
G+A+DW T+K+YWT++ N IEV++ DG TLL W+ L +PRDI V+P G M+W WG
Sbjct: 1040 GLALDWITDKIYWTDAGTNRIEVASTDGKQRTLLIWERLDKPRDIVVHPSDGYMFWSDWG 1099
Query: 574 DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQT 633
IE AGMDGS R L S++L+ P GLA+D +N RLY+ + G K +EF N DGT +
Sbjct: 1100 SNPLIERAGMDGSGRVTLVSENLQWPNGLALDTDNHRLYFVDGGTKLLEFVNFDGTGRNR 1159
Query: 634 LIA----------------------LHHLKVMTKVVG------------LTDIDIFHRRR 659
LI H ++V K+ G L DI +FHR R
Sbjct: 1160 LITEGLKHPFGLDVYGQKVYWTDWDTHSIQVANKLTGQNKTVVLANNTDLMDIRVFHRNR 1219
Query: 660 SKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIR 719
+PC NGGCS++CL++P C CP G L +D +TC + PSK+L+ + IR
Sbjct: 1220 KDVRNPCKPRNGGCSYICLLSPTR-YTCACPIGIQLNDDAKTCKDGPSKYLIFAHRSDIR 1278
Query: 720 QISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN 779
Q+SLD +Y+ +VLPL + ++DVDT +YW+D E I R + ++++
Sbjct: 1279 QVSLDSDYQIDVVLPLPPISNAVALDVDTVTGDVYWADTVEDVIMRSSPNGMHVKQVLSE 1338
Query: 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLM 839
++ +S+ +D+IGRKIYW D + +I VS++DG VL W +L PR I + Y G +
Sbjct: 1339 SMDSVDSLVIDSIGRKIYWADSHRCSIEVSELDGSVRTVLVWHDLDHPRGIALDYDSGYL 1398
Query: 840 VWADWSRTRLTNNRIEMAHMDGTNRA-VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE 898
W+DW + + IE A MDG +R + T++ + S LA+D +N ++YW D+ IE
Sbjct: 1399 FWSDWRKEPV----IERADMDGEHRKRIVTTDLGFVSGLAVDSVEN-RIYWTDSKAKRIE 1453
Query: 899 YKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD-------VKDIVEF 951
K SHPY LTV VYWTD ++ +K + KD+ E
Sbjct: 1454 SCDFNGNSRKILLNNLSHPYALTVTTSTVYWTDWVTKALHSVSKLNTSKVRKVAKDLEEL 1513
Query: 952 AQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILL-SADRRSCFSR 1010
V V + S + CG NNGGCSHLCLRNP ++C CPTG+L+ + C +
Sbjct: 1514 MDVK----VVLGPSDSQDDFCGKNNGGCSHLCLRNPGGYSCKCPTGLLMKDGSNKECRTI 1569
Query: 1011 TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLR 1070
E+LL R G I RISLDT D+ V LP + DYH+ + I++AD+ +R
Sbjct: 1570 PDEYLLIALRSG-IGRISLDTQDMFDVVLPIEGVHGVVALDYHFDRMYIFYADVNVDAIR 1628
Query: 1071 TFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK-ILVND 1129
++D + K I + + +DW+A+N+Y+ D+ + I V+R DG +K +L
Sbjct: 1629 RVSINDFSNTKVIVSSGLSTPNGIAVDWLADNLYWTDAALKKIEVSRLDGSCRKAVLTGG 1688
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
L +P +I +YP+RG +F++ WG +IE+ Y+DGS R +++ +L FP LAIDF
Sbjct: 1689 LDDPRSIILYPKRGFMFWTDWG-----QAPRIERAYMDGSERRSIIDSELGFPTGLAIDF 1743
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAM 1248
++L+WAD+ RIE CDF G+ R VIS+ A +G ++ +YWTDW
Sbjct: 1744 AMKKLYWADAQQDRIEMCDFDGKRRTRVISQAAHSFGFTLTGG-------YMYWTDWHNK 1796
Query: 1249 SVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQL-TWNPCAQDNGGCSHLCFYKGR 1307
SV A ++ V +R L I+++S S+Q WNPC QDNGGCSHLC +
Sbjct: 1797 SVQRAPKRVAA---PVEEVRFGLRGALEIRSVSGSRQPHDWNPCGQDNGGCSHLCLF-AE 1852
Query: 1308 TKGYVCGCPD 1317
T+ YVCGCPD
Sbjct: 1853 TR-YVCGCPD 1861
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|327259681|ref|XP_003214664.1| PREDICTED: low-density lipoprotein receptor-related protein 4-like [Anolis carolinensis] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/1394 (39%), Positives = 796/1394 (57%), Gaps = 128/1394 (9%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
++G C+ + W+CD E DC DE C P+ C+PD+ C G CI + LC+G D
Sbjct: 284 KSGRCVRSSWRCDGEDDCSDNSDEENCEDTGSPQ-CAPDQFLCGNGRCIGQRKLCNGAND 342
Query: 84 CSLGEDE---RNC-----NKTCDAQKEFSCMKLAEPRPT-EVGSNIKYFPLHTVRAPR-- 132
C G DE +NC + C+ K R T + + Y L R+ +
Sbjct: 343 CGDGSDESPDQNCRPRTGEENCNLNNGGCAQKCQMTRGTVQCTCHTGYRLLEDGRSCQDV 402
Query: 133 KDCFSKKYLCDGKKHCPRG-----EEG----PDERHCP----------------KRVSLS 167
+C + Y G + G E+G PD+R C ++V
Sbjct: 403 NECAEEGYCSQGCTNSEGGFQCWCEQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPH 462
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSL 210
+YT ++ NL N +A+D+H+ K L+ W+ +V TG++S G L
Sbjct: 463 RSEYTLLLNNLENAIALDFHHNKELVFWSDVTLDRIMRANLNGSNVEEVVSTGLESPGGL 522
Query: 211 SVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKT 270
+VDW+HD +FWTD+ R+E +LDG +RK+L+ N++KPRA+ +HP + ++WTDWG T
Sbjct: 523 AVDWIHDKLFWTDSGTSRIEVANLDGTHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNT 582
Query: 271 PKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
P+IE MDGSNR++I ++FWPNGLTID+ R+YW +AKHH IE +DLDG R+ VI
Sbjct: 583 PRIEYSNMDGSNRRIIADTHLFWPNGLTIDYAGHRMYWVDAKHHVIERADLDGQNRKAVI 642
Query: 331 TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQP 390
++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP
Sbjct: 643 SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 702
Query: 391 NYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL-RI 447
++ C C+H+CLPN +TC CP G + + +C++S ++ L++AR+ D+ RI
Sbjct: 703 AGRNRCGSDNGGCTHLCLPNNKAYTCACPTGFRKTS-SHTCAQSLDKFLLFARRMDIRRI 761
Query: 448 SQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRH 507
S TE + V+P+ +V+S VA+ W++ +D +YW DV I+RA +GT Q V
Sbjct: 762 SFDTE--DLSDDVIPLADVRSAVALDWDAKDDYVYWTDVSTDSISRAKWDGTGQEVVADS 819
Query: 508 NTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIM 567
+ + PAG+AIDW TNKLYWT++ + IEVSN DGT T+L W+NL PRDI V+P+GG M
Sbjct: 820 SLESPAGLAIDWVTNKLYWTDAGTDRIEVSNTDGTMRTVLIWENLDRPRDIVVDPVGGFM 879
Query: 568 YWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD 627
YW WG KIE AGMD S R ++ S +L P GLAID E+ RLYWA+ G+KTIE+ LD
Sbjct: 880 YWTDWGANPKIECAGMDASGRLVIISSNLTWPNGLAIDYESQRLYWADAGMKTIEYAGLD 939
Query: 628 GTRKQTLIA--LHH--------------------LKVMTKVVG------------LTDID 653
G+ ++ LI L H ++ K G L DI
Sbjct: 940 GSDRRVLIGSNLPHPFGLTLYGSRIFWTDWQAKSIQSADKRTGEDRETLQDNLENLMDIH 999
Query: 654 IFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLREDRRTCSENPSKFLLV 712
+FHR R C+ NNGGCSHLCL+AP G C CP G L+ D +TC + FL+
Sbjct: 1000 VFHRHRPPVHTLCSVNNGGCSHLCLLAPLPKGHTCTCPTGINLQPDGKTCLPGMTSFLIF 1059
Query: 713 SQTDKIRQISLDVEYRYPIVLPLRQ-LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT 771
++ IR +SLD+ Y +V+ + +K ++ VD + +YWSD + + I R D +
Sbjct: 1060 ARRADIRLVSLDIPYFADVVISVNMTMKNTIAIGVDPQEGKVYWSDSTLRKISRAALDGS 1119
Query: 772 GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831
E ++ L T+ +AVDAIGRK+YWTD I V ++DG KVL W NL PR+I
Sbjct: 1120 QYEDIITTGLQTTDGLAVDAIGRKVYWTDTGINRIEVGNLDGSMRKVLIWENLDSPRAIA 1179
Query: 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWV 890
+++ +G M W DW N ++E A MDG+NR V + WP+ LA+D + +L W
Sbjct: 1180 LYHEMGFMYWTDWGE----NAKLERAGMDGSNRMVLINNNLGWPNGLAVDKA-GSQLLWA 1234
Query: 891 DTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVE 950
D IE L + + HPY LT+LD Y+YWTD Q I+RA+K ++++
Sbjct: 1235 DAHTERIEAADLNGANRRTLLSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKNTGENVI- 1293
Query: 951 FAQVDRPWLVR-AAQNISFP---NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRS 1006
+ + P L+ A + P N CG NGGCSHLCL NP F+CACPTGI L D R+
Sbjct: 1294 LVRANLPGLMDIQAVDRERPLGANKCGMRNGGCSHLCLPNPEGFSCACPTGIKLKTDERT 1353
Query: 1007 CFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS 1066
C +LL++SR G IRRISLDT+D V +P PE + I DY IY+ D+
Sbjct: 1354 CDPSPETYLLFSSR-GSIRRISLDTSDHTDVHVPVPELNNVISLDYDSVDGKIYYTDVFL 1412
Query: 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126
+R D++ S ++ + D +DWVA N+Y+ D+ +TI VAR DG +K+L
Sbjct: 1413 DVIRRADLNGSN-METVIGQGLKTTDGLAVDWVARNLYWTDTGRNTIEVARLDGSCRKVL 1471
Query: 1127 VND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNEL 1185
+N+ L EP AIAV+PR+G LF++ WG KIE+ LDGS R +L+ DL +PN L
Sbjct: 1472 INNSLDEPRAIAVFPRKGYLFWTDWG-----HVAKIERANLDGSERKILINSDLGWPNGL 1526
Query: 1186 AIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTD 1244
+D+ RR++W D+ RIE D G+ R++++S+V+ P+ L+ + LYWTD
Sbjct: 1527 TLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSQVSHPFALTQQDR-------WLYWTD 1579
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFY 1304
W+ S I R +G+ + + +N E ++I +S +Q N C +NGGC+HLCF
Sbjct: 1580 WKTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQRQTGTNGCGVNNGGCTHLCF- 1635
Query: 1305 KGRTKGYVCGCPDD 1318
R ++C CPD+
Sbjct: 1636 -ARATDFICACPDE 1648
|
Source: Anolis carolinensis Species: Anolis carolinensis Genus: Anolis Family: Iguanidae Order: Squamata Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|363734400|ref|XP_421114.3| PREDICTED: low-density lipoprotein receptor-related protein 4 [Gallus gallus] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/1394 (38%), Positives = 794/1394 (56%), Gaps = 128/1394 (9%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
++G C+ W+CD E DC DE C P+ C+PD+ C G CI + LC+G D
Sbjct: 322 KSGRCVRLSWRCDGEDDCSDNSDEENCENTGTPQ-CAPDQFLCGNGRCIGQRKLCNGAND 380
Query: 84 CSLGEDE---RNC-----NKTCDAQKEFSCMKLAEPRP-TEVGSNIKYFPLHTVRAPR-- 132
C G DE +NC + C+ K R + + Y L R+ +
Sbjct: 381 CGDGSDESPHQNCRPRTGEENCNVNNGGCAQKCQMVRGMVQCTCHTGYRLLEDGRSCQDV 440
Query: 133 KDCFSKKYLCDGKKHCPRG-----EEG----PDERHCP----------------KRVSLS 167
+C + Y G + G E+G PD+R C ++V
Sbjct: 441 NECAEEGYCSQGCTNSEGGFQCWCEQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPH 500
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSL 210
+YT ++ NL N +A+D+H+ K L+ W+ +V TG++S G L
Sbjct: 501 RSEYTLLLNNLENAIALDFHHSKELVFWSDVTLDRIMRANLNGSNVEEVVSTGLESPGGL 560
Query: 211 SVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKT 270
++DW+HD ++WTD+ R+E +LDG +RK+L+ N++KPRA+ +HP + ++WTDWG T
Sbjct: 561 AIDWIHDKLYWTDSGTSRIEVANLDGTHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNT 620
Query: 271 PKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
P+IE MDGSNR++I ++FWPNGLTID+ R+YW +AKHH IE +DLDG R+ VI
Sbjct: 621 PRIEYSNMDGSNRRIIADTHLFWPNGLTIDYAGHRMYWVDAKHHVIERADLDGRNRKAVI 680
Query: 331 TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQP 390
++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP
Sbjct: 681 SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 740
Query: 391 NYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRIS 448
++ C C+H+CLP+ +TC CP G + + +C++S ++ L++AR+ D+R
Sbjct: 741 AGRNRCGANNGGCTHLCLPSSKDYTCACPTGFRKTS-SHACAQSLDKFLLFARRMDIRRI 799
Query: 449 QLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHN 508
+ + V+P+ +V+S VA+ W+S +D +YW DV I+RA +G+ Q V+ +
Sbjct: 800 SF-DTDDLSDDVIPLADVRSAVALDWDSKDDYVYWTDVSTDSISRAKWDGSGQEVVVDTS 858
Query: 509 TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMY 568
+ PAG+AIDW TNKLYWT++ + IEVSN DGT T+L W+NL PRDI V+P+GG MY
Sbjct: 859 LESPAGLAIDWVTNKLYWTDAGTDRIEVSNTDGTMRTVLIWENLDRPRDIVVDPVGGFMY 918
Query: 569 WCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDG 628
W WG KIE AGMD S+R ++ S +L P GLAID E+ RLYWA+ G+KTIE+ +LDG
Sbjct: 919 WTDWGANPKIERAGMDASNRLVIISSNLTWPNGLAIDYESQRLYWADAGMKTIEYASLDG 978
Query: 629 TRKQTLIA--LHHLKVMT--------------------------------KVVGLTDIDI 654
+ ++ LI L H +T + L DI +
Sbjct: 979 SNRKVLIGSNLPHPFGLTLYGERIYWTDWQAKSIQSADRRTGQARETLQDNLENLMDIHV 1038
Query: 655 FHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLREDRRTCSENPSKFLLVS 713
FHR R PC NNGGCSHLCL+AP G C CP G L+ D +TCS + FL+ +
Sbjct: 1039 FHRHRPPVRTPCEVNNGGCSHLCLLAPLPKGYSCTCPTGINLQSDGKTCSTGMTSFLIFA 1098
Query: 714 QTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTG 772
+ IR +SLD+ Y +V+ + +K ++ VD +YWSD + + I R D +
Sbjct: 1099 RRTDIRMVSLDIPYFADVVVSVNVTMKNTIAIGVDPHEGKVYWSDSTLRKISRAALDGSK 1158
Query: 773 RERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVV 832
E ++ L T+ +AVDAIGRKIYWTD I V ++DG KVL W NL PR+I +
Sbjct: 1159 FEDIITTGLLTTDGLAVDAIGRKIYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIAL 1218
Query: 833 HYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVD 891
++ +G M W DW N ++E + MDG+ R V + WP+ LA+D + +L W D
Sbjct: 1219 YHEMGYMYWTDWGE----NAKLERSGMDGSGRVVLISNNLGWPNGLAVDKA-GSQLLWAD 1273
Query: 892 TSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF 951
IE L + + HPY LT+LD Y+YWTD Q I+RA+K +++
Sbjct: 1274 AHTERIEAADLNGANRRTLLSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKDSGANVI-L 1332
Query: 952 AQVDRPWL-----VRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRS 1006
+ + P L V A+ + F N CG NGGCSHLCL +PT F+CACPTGI L D ++
Sbjct: 1333 VRANLPGLMDIQAVDRARPLGF-NKCGVRNGGCSHLCLPHPTGFSCACPTGIQLKRDEQT 1391
Query: 1007 CFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS 1066
C S +LL++SR IRRISLDT+D V +P PE + I DY IY+ D+
Sbjct: 1392 CDSSPETYLLFSSR-ASIRRISLDTSDHTDVHIPVPELNNVISLDYDSVDGKIYYTDVFL 1450
Query: 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126
+R D++ S ++ + D +DWVA N+Y+ D+ +T+ VAR DG +K+L
Sbjct: 1451 DVIRRSDLNGSN-METVIGQGLKTTDGLAVDWVARNLYWTDTGRNTVEVARLDGSSRKVL 1509
Query: 1127 VND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNEL 1185
+N+ L EP AIAV+P++G LF++ WG KIE+ LDGS R +L+ DL +PN L
Sbjct: 1510 INNSLDEPRAIAVFPKKGYLFWTDWG-----HIAKIERANLDGSERKILINTDLGWPNGL 1564
Query: 1186 AIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTD 1244
+D+ RR++W D+ RIE CD G+ R++++S+V+ P+ L+ + +YWTD
Sbjct: 1565 TLDYDTRRIYWVDAHLDRIESCDLNGKLRQVLVSQVSHPFALTQQDR-------WIYWTD 1617
Query: 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFY 1304
W+ S I R +G+ + + +N E ++I +S +Q N C +NGGC+HLCF
Sbjct: 1618 WQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQRQTGTNACGVNNGGCTHLCF- 1673
Query: 1305 KGRTKGYVCGCPDD 1318
R +VC CPD+
Sbjct: 1674 -ARASDFVCACPDE 1686
|
Source: Gallus gallus Species: Gallus gallus Genus: Gallus Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1332 | ||||||
| UNIPROTKB|F1ML31 | 1897 | LRP4 "Uncharacterized protein" | 0.611 | 0.429 | 0.362 | 2.8e-174 | |
| UNIPROTKB|F1SIB6 | 1898 | LRP4 "Uncharacterized protein" | 0.609 | 0.427 | 0.363 | 1.8e-172 | |
| UNIPROTKB|F1PXA0 | 1614 | LRP5 "Uncharacterized protein" | 0.349 | 0.288 | 0.412 | 8.8e-187 | |
| UNIPROTKB|F1N1K8 | 1611 | LRP5 "Uncharacterized protein" | 0.349 | 0.289 | 0.405 | 2.6e-185 | |
| RGD|1309329 | 1615 | Lrp5 "low density lipoprotein | 0.586 | 0.483 | 0.309 | 8.4e-116 | |
| MGI|MGI:1278315 | 1614 | Lrp5 "low density lipoprotein | 0.586 | 0.483 | 0.309 | 5e-116 | |
| UNIPROTKB|O75197 | 1615 | LRP5 "Low-density lipoprotein | 0.585 | 0.482 | 0.304 | 1.8e-104 | |
| UNIPROTKB|F1P1P9 | 1901 | LRP4 "Uncharacterized protein" | 0.611 | 0.428 | 0.363 | 4e-177 | |
| UNIPROTKB|J9P7Q4 | 1953 | LRP4 "Uncharacterized protein" | 0.623 | 0.425 | 0.358 | 1.3e-174 | |
| UNIPROTKB|F1PST3 | 1904 | LRP4 "Uncharacterized protein" | 0.623 | 0.436 | 0.358 | 2.2e-174 |
| UNIPROTKB|F1ML31 LRP4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
Identities = 311/859 (36%), Positives = 470/859 (54%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
T + V+ +++S +A + A + LYW D I A+ +G+ + ++ N +P +
Sbjct: 797 TGQEVVVDTSLESPAGLAIDWATNKLYWTDAGTDRIEVANTDGSMRTVLLWENLDRPRDI 856
Query: 516 AIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD 574
++ +YWT+ IE + +D + ++ NL+ P +A++ +YW G
Sbjct: 857 VVEPMGGYMYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAG- 915
Query: 575 LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN-LDGTRKQT 633
+ IE AG+DGS R +L L +P GL L R+YW + K+I+ + L G ++T
Sbjct: 916 MKTIEFAGLDGSKRKVLIGSQLPHPFGLT--LYGERIYWTDWQTKSIQSADRLTGLDRET 973
Query: 634 LIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPAG 692
L + L DI +FHRRR + PC NGGCSHLCL +P G C CP G
Sbjct: 974 L--------QENLENLMDIHVFHRRRPPVSTPCATENGGCSHLCLRSPNPSGFSCTCPTG 1025
Query: 693 NLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNE 751
+ D +TCS + FL+ ++ IR +SLD+ Y +V+P+ +K ++ VD +
Sbjct: 1026 INVMPDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINITMKNTIAIGVDPQEG 1085
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
+YWSD + I R R D + E L+ L T+ +AVDAIGRK+YWTDM I V ++
Sbjct: 1086 RVYWSDSTLHRISRARLDGSQHEDLITTGLQTTDGLAVDAIGRKVYWTDMGTNRIEVGNL 1145
Query: 812 DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETE 870
DG KVL W NL PR+IV+++ +G M W DW + ++E + MDG++RAV +
Sbjct: 1146 DGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGE----HAKLERSGMDGSDRAVLINSN 1201
Query: 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWT 930
+ WP+ L +D + + +L W D IE L + HPY LT+LD Y+YWT
Sbjct: 1202 LGWPNGLTVDKASS-QLLWADAHTERIEAADLNGANRHTLVSPVQHPYGLTLLDAYIYWT 1260
Query: 931 DVQHSKIYRANKYDVKDIVEFAQVDRPWLVRA-AQNISFP---NACGSNNGGCSHLCLRN 986
D Q I+RA+K +++ + + P L+ A + S P N CG NGGCSHLCL
Sbjct: 1261 DWQTRSIHRADKGTGSNVI-LVRSNLPGLMDIQAVDRSQPLGVNKCGPRNGGCSHLCLPR 1319
Query: 987 PTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMS 1046
P+ F+CACPTGI L D ++C +LL++SR G IRRISLDT+D V +P PE +
Sbjct: 1320 PSGFSCACPTGIQLKGDGKTCDPAPETYLLFSSR-GSIRRISLDTSDHTDVHVPVPELNN 1378
Query: 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYI 1106
I DY +Y+ D+ +R D++ S I T D +DWVA N+Y+
Sbjct: 1379 VISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTT-DGLAVDWVARNLYWT 1437
Query: 1107 DSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165
D+ +TI +R DG +K+L+N+ L EP AIAV+PR+G LF++ WG KIE+
Sbjct: 1438 DTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWG-----HIAKIERAN 1492
Query: 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PY 1224
LDGS R VL+ DL +PN L +D+ RR++W D+ RIE D G+ R++++S V+ P+
Sbjct: 1493 LDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLSGKLRQVLVSHVSHPF 1552
Query: 1225 GLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASK 1284
L+ + +YWTDW+ S I R +G+ + + +N E ++I +S +
Sbjct: 1553 ALTQQDR-------WIYWTDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQR 1602
Query: 1285 QLTWNPCAQDNGGCSHLCF 1303
Q N C +NGGC+HLCF
Sbjct: 1603 QTGTNACGVNNGGCTHLCF 1621
|
|
| UNIPROTKB|F1SIB6 LRP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1381 (491.2 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
Identities = 313/861 (36%), Positives = 469/861 (54%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
T + V+ +++S +A + + LYW D I A+ +G+ + +I N +P +
Sbjct: 798 TGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDI 857
Query: 516 AIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD 574
++ +YWT+ IE + +D + ++ NL+ P +A++ +YW G
Sbjct: 858 VVEPMGGYMYWTDWGASPKIERAGMDASGRQVIISSNLTWPNGLAIDYGSQRLYWADAG- 916
Query: 575 LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN-LDGTRKQT 633
+ IE +G+DGS R +L L +P GL L R+YW + K+I+ + L G ++T
Sbjct: 917 MKTIEFSGLDGSKRKVLIGSQLPHPFGLT--LYGDRIYWTDWQTKSIQSADRLTGLDRET 974
Query: 634 LIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPAG 692
L + L DI +FHRRR + PC NGGCSHLCL +P G C CP G
Sbjct: 975 L--------QENLENLMDIHVFHRRRPPVSTPCATENGGCSHLCLRSPSPSGFSCTCPTG 1026
Query: 693 NLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNE 751
L D +TCS + FL+ ++ IR +SLD+ Y +V+P+ +K ++ VD +
Sbjct: 1027 INLMPDGKTCSPGMNSFLIFARRIDIRMVSLDILYFADVVVPINITMKNTIAIGVDPQEG 1086
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
+YWSD + I R D + E ++ L T+ +AVDAIGRK+YWTD I V ++
Sbjct: 1087 KVYWSDSTLHRISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNL 1146
Query: 812 DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEV 871
DG KVL W NL PR+IV+++ G M W DW + ++E + MDG++R V
Sbjct: 1147 DGSMRKVLVWQNLDSPRAIVLYHEKGFMYWTDWGE----HAKLERSGMDGSDRTVLINHN 1202
Query: 872 I-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYW 929
+ WP+ L +D + + +L W D IE L R VQ HPY LT+LD Y+YW
Sbjct: 1203 LGWPNGLTVDKASS-QLLWADAHTERIEAADLNGASRHTLVSPVQ-HPYGLTLLDSYIYW 1260
Query: 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWL--VRA---AQNISFPNACGSNNGGCSHLCL 984
TD Q I+RA+K +++ + + P L ++A AQ + F N CGS NGGCSHLCL
Sbjct: 1261 TDWQTRSIHRADKGTGGNVI-LVRSNLPGLMDIQAVDRAQPLGF-NKCGSRNGGCSHLCL 1318
Query: 985 RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEY 1044
P+ F+CACPTGI L D ++C +LL++SR G IRRISLDT+D V +P PE
Sbjct: 1319 PRPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSR-GSIRRISLDTSDHTDVHVPVPEL 1377
Query: 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104
+ I DY +Y+ D+ +R D++ S I T D +DWVA N+Y
Sbjct: 1378 NNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTT-DGLAVDWVARNLY 1436
Query: 1105 YIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163
+ D+ +TI +R DG +K+LVN+ L EP AIAV+PR+G LF++ WG KIE+
Sbjct: 1437 WTDTGRNTIEASRLDGSCRKVLVNNSLDEPRAIAVFPRKGYLFWTDWG-----HIAKIER 1491
Query: 1164 VYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA- 1222
LDGS R VL+ DL +PN L +D+ RR++W D+ RIE D G+ R++++S V+
Sbjct: 1492 ANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLSGKLRQVLVSHVSH 1551
Query: 1223 PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISA 1282
P+ L+ + +YWTDW+ S I R +G+ + + +N E ++I +S
Sbjct: 1552 PFALTQQDR-------WIYWTDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSP 1601
Query: 1283 SKQLTWNPCAQDNGGCSHLCF 1303
+Q N C +NGGC+HLCF
Sbjct: 1602 QRQTGTNACGVNNGGCTHLCF 1622
|
|
| UNIPROTKB|F1PXA0 LRP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 8.8e-187, Sum P(3) = 8.8e-187
Identities = 195/473 (41%), Positives = 292/473 (61%)
Query: 198 HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHP 257
++V +G+ S L+ DWV ++WTD+ R+E +L+G +RK+L ++D+PRA+ + P
Sbjct: 100 NVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 159
Query: 258 RDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIE 317
+++WTDWG+TP+IER MDGS RK+I+ +I+WPNGLTID EE +LYW +AK FI
Sbjct: 160 AHGYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIH 219
Query: 318 SSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHF 377
++LDGS RQ+V+ L HPF +TL D ++WTDW T+SI + NK TG K + S L+
Sbjct: 220 RANLDGSFRQKVVEGSLTHPFALTLSGDTLYWTDWQTRSIHACNKRTGEKRKEILSALYS 279
Query: 378 PMNIRSYHPHRQPNYQSHCAPKV--CSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESP 433
PM+I+ P RQP + + CA CSH+CL P + +TC CP G+ L + K+C
Sbjct: 280 PMDIQVLSPERQPYFHTRCAEDNGGCSHLCLLSPREPFYTCACPTGVQLQDNGKTCKAGA 339
Query: 434 EELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINR 493
EE+L+ AR+ DLR L P T + VL V +++ +AI ++ +YW D E I R
Sbjct: 340 EEVLLLARRTDLRRISLDTPDFT-DIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRR 398
Query: 494 AHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLS 553
A+++G+ ++ P G+A+DW LYWT++ + IEV+ L+GT +L +L
Sbjct: 399 AYLDGSGAQTLVNTEINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSDDLD 458
Query: 554 EPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
EPR I ++P+ G+MYW WG+ KIE A +DG RHIL + SL P GLA+DL+ +LYW
Sbjct: 459 EPRAIVLHPVMGLMYWTDWGENPKIECANLDGQERHILVNTSLGWPNGLALDLQEGKLYW 518
Query: 614 ANVGLKTIEFTNLDGTRKQTLIA--LHHLKVMTKVVGLTDIDIFHRRRSKKTH 664
+ IE N+DGT+++TL+ L H+ T + + RR ++ H
Sbjct: 519 GDAKTDKIEVINVDGTKRRTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVH 571
|
|
| UNIPROTKB|F1N1K8 LRP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1021 (364.5 bits), Expect = 2.6e-185, Sum P(3) = 2.6e-185
Identities = 192/473 (40%), Positives = 291/473 (61%)
Query: 198 HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHP 257
++V +G+ S L+ DWV ++WTD+ R+E +L+G +RK+L ++D+PRA+ + P
Sbjct: 97 NVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 156
Query: 258 RDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIE 317
+++WTDWG+TP+IER MDGS RK+I+ +I+WPNGLTID EE +LYW +AK FI
Sbjct: 157 AHGYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSFIH 216
Query: 318 SSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHF 377
++LDGS RQ+V+ L HPF +TL D ++WTDW T+SI + NK TG K + S L+
Sbjct: 217 RANLDGSFRQKVVEGSLTHPFALTLSGDTLYWTDWQTRSIHACNKRTGDKRKEILSALYS 276
Query: 378 PMNIRSYHPHRQPNYQSHCAPKV--CSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESP 433
PM+I+ P RQP Y + C CSH+CL P + + C CP G+ L + ++C
Sbjct: 277 PMDIQVLSPERQPYYHTRCEEDNGGCSHLCLLSPREPFYACACPTGVQLQDNGQTCKAGA 336
Query: 434 EELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINR 493
EE+L+ AR+ DLR L P T + VL V +++ +AI ++ +YW D E I R
Sbjct: 337 EEVLLLARRTDLRRISLDTPDFT-DIVLQVDDIRHAIAIDYDPLEGYVYWTDDEVRAIRR 395
Query: 494 AHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLS 553
A+++G+ ++ P G+A+DW LYWT++ + IEV+ L+GT +L ++L
Sbjct: 396 AYLDGSGAQTLVNTEINDPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLD 455
Query: 554 EPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
EPR I ++P+ G+MYW WG+ KIE A +DG RHIL + SL P GLA+DL+ +LYW
Sbjct: 456 EPRAIVLHPVMGLMYWTDWGENPKIECANLDGQERHILVNTSLGWPNGLALDLQEGKLYW 515
Query: 614 ANVGLKTIEFTNLDGTRKQTLIA--LHHLKVMTKVVGLTDIDIFHRRRSKKTH 664
+ IE ++DGT+++TL+ L H+ T + + RR ++ H
Sbjct: 516 GDAKTDKIEVIDVDGTKRRTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVH 568
|
|
| RGD|1309329 Lrp5 "low density lipoprotein receptor-related protein 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1031 (368.0 bits), Expect = 8.4e-116, Sum P(2) = 8.4e-116
Identities = 256/827 (30%), Positives = 413/827 (49%)
Query: 442 QKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQ 501
++ ++ + L + + ++ + + S +A + LYW D E I A++NGT +
Sbjct: 84 EEAIKQTYLNQTGAAAQNIV-ISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 142
Query: 502 YNVIRHNTKKPAGVAIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAV 560
+ + +P +A+D +YWT+ E IE + +DG+ ++ ++ P + +
Sbjct: 143 KVLFWQDLDQPRAIALDPAHGYMYWTDWGEAPRIERAGMDGSTRKIIVDSDIYWPNGLTI 202
Query: 561 NPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKT 620
+ +YW L I A +DGS R + SL +P A+ L LYW + ++
Sbjct: 203 DLEEQKLYWAD-AKLSFIHRANLDGSFRQKVVEGSLTHP--FALTLSGDTLYWTDWQTRS 259
Query: 621 IEFTNL-DGT-RKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTH-PCNENNGGCSHLC 677
I N G RK+ L AL+ DI + + R H PC E NGGCSHLC
Sbjct: 260 IHACNKWTGEKRKEILSALY---------SPMDIQVLSQERQPHFHTPCEEGNGGCSHLC 310
Query: 678 LIAPKDGI-RCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR 736
L++P++ C CP G L+++ +TC + LL+++ +R+ISLD IVL +
Sbjct: 311 LLSPREPFYSCACPTGVQLQDNGKTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVG 370
Query: 737 QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKI 796
++ ++D D Y+YW+D + I R D +G + LV ++N + IAVD + R +
Sbjct: 371 DIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGIAVDWVARNL 430
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I V+ ++G + K+L +L PR+IV+H +GLM W DW N +IE
Sbjct: 431 YWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMYWTDWGE----NPKIEC 486
Query: 857 AHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A++DG +R V T + WP+ LA+D + KLYW D IE + T R
Sbjct: 487 ANLDGRDRHVLVNTSLGWPNGLALDLQEG-KLYWGDAKTDKIEVINIDGTKRQTLLEDKL 545
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDV-KDIVEFAQVDRPWL--VRAAQNISFPNA 971
H + T+L ++YWTD Q I R +K +D++ D L V A+ + N
Sbjct: 546 PHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAVNVAKVVG-TNP 604
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDT 1031
C NGGCSHLC P C CP G+ L +D ++C FL++TSR I RISL+T
Sbjct: 605 CADGNGGCSHLCFFTPHATKCGCPIGLELLSDMKTCII-PEAFLVFTSR-ATIHRISLET 662
Query: 1032 ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091
+ V +P + D+ S N IY+ D+ + M+ S+ I D
Sbjct: 663 NNN-DVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVIEFGLD-YP 720
Query: 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHW 1150
+ +DW+ N+Y+ D+ + I VAR DGQ +++LV DL P ++A+ P +G ++++ W
Sbjct: 721 EGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPTKGYIYWTEW 780
Query: 1151 GLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210
G P +I + ++DG+ LV++ + N+L ID+ +RL+W D IE +
Sbjct: 781 G---GKP--RIVRAFMDGTNCMTLVDK-VGRANDLTIDYADQRLYWTDLDTNMIESSNML 834
Query: 1211 GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257
G+ R +VI+ PY + Q + +YWTDW S+ A + S
Sbjct: 835 GQER-MVIADDLPYPFGLTQ-----YSDYIYWTDWNLHSIERADKTS 875
|
|
| MGI|MGI:1278315 Lrp5 "low density lipoprotein receptor-related protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1033 (368.7 bits), Expect = 5.0e-116, Sum P(2) = 5.0e-116
Identities = 256/827 (30%), Positives = 414/827 (50%)
Query: 442 QKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQ 501
++ ++ + L + + ++ + + S +A + LYW D E I A++NGT +
Sbjct: 83 EEAIKQTYLNQTGAAAQNIV-ISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 141
Query: 502 YNVIRHNTKKPAGVAIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAV 560
+ + +P +A+D +YWT+ E IE + +DG+ ++ ++ P + +
Sbjct: 142 KVLFWQDLDQPRAIALDPAHGYMYWTDWGEAPRIERAGMDGSTRKIIVDSDIYWPNGLTI 201
Query: 561 NPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKT 620
+ +YW L I A +DGS R + SL +P A+ L LYW + ++
Sbjct: 202 DLEEQKLYWAD-AKLSFIHRANLDGSFRQKVVEGSLTHP--FALTLSGDTLYWTDWQTRS 258
Query: 621 IEFTNL-DGT-RKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTH-PCNENNGGCSHLC 677
I N G RK+ L AL+ DI + + R H PC E+NGGCSHLC
Sbjct: 259 IHACNKWTGEQRKEILSALY---------SPMDIQVLSQERQPPFHTPCEEDNGGCSHLC 309
Query: 678 LIAPKDGI-RCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR 736
L++P++ C CP G L+++ +TC + LL+++ +R+ISLD IVL +
Sbjct: 310 LLSPREPFYSCACPTGVQLQDNGKTCKTGAEEVLLLARRTDLRRISLDTPDFTDIVLQVG 369
Query: 737 QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKI 796
++ ++D D Y+YW+D + I R D +G + LV ++N + IAVD + R +
Sbjct: 370 DIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGIAVDWVARNL 429
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I V+ ++G + K+L +L PR+IV+H +GLM W DW N +IE
Sbjct: 430 YWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMYWTDWGE----NPKIEC 485
Query: 857 AHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A++DG +R V T + WP+ LA+D + KLYW D IE + T R
Sbjct: 486 ANLDGRDRHVLVNTSLGWPNGLALDLQEG-KLYWGDAKTDKIEVINIDGTKRKTLLEDKL 544
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDV-KDIVEFAQVDRPWL--VRAAQNISFPNA 971
H + T+L ++YWTD Q I R +K +D++ D L V A+ + N
Sbjct: 545 PHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAVNVAKVVG-TNP 603
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDT 1031
C NGGCSHLC P C CP G+ L +D ++C FL++TSR I RISL+T
Sbjct: 604 CADGNGGCSHLCFFTPRATKCGCPIGLELLSDMKTCII-PEAFLVFTSR-ATIHRISLET 661
Query: 1032 ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091
+ V +P + D+ S N IY+ D+ + M+ S+ I D
Sbjct: 662 NNN-DVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSSVEHVIEFGLD-YP 719
Query: 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHW 1150
+ +DW+ N+Y+ D+ + I VAR DGQ +++LV DL P ++A+ P +G ++++ W
Sbjct: 720 EGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPTKGYIYWTEW 779
Query: 1151 GLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210
G P +I + ++DG+ LV++ + N+L ID+ +RL+W D IE +
Sbjct: 780 G---GKP--RIVRAFMDGTNCMTLVDK-VGRANDLTIDYADQRLYWTDLDTNMIESSNML 833
Query: 1211 GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257
G+ R +VI+ PY + Q + +YWTDW S+ A + S
Sbjct: 834 GQER-MVIADDLPYPFGLTQ-----YSDYIYWTDWNLHSIERADKTS 874
|
|
| UNIPROTKB|O75197 LRP5 "Low-density lipoprotein receptor-related protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 1.8e-104, Sum P(2) = 1.8e-104
Identities = 252/828 (30%), Positives = 411/828 (49%)
Query: 442 QKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQ 501
++ ++ + L + + V+ + + S +A + LYW D E I A++NGT +
Sbjct: 84 EEAIKQTYLNQTGAAVQNVV-ISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSR 142
Query: 502 YNVIRHNTKKPAGVAIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAV 560
+ + +P +A+D +YWT+ E IE + +DG+ ++ ++ P + +
Sbjct: 143 KVLFWQDLDQPRAIALDPAHGYMYWTDWGETPRIERAGMDGSTRKIIVDSDIYWPNGLTI 202
Query: 561 NPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKT 620
+ +YW L I A +DGS R + SL +P A+ L LYW + ++
Sbjct: 203 DLEEQKLYWAD-AKLSFIHRANLDGSFRQKVVEGSLTHP--FALTLSGDTLYWTDWQTRS 259
Query: 621 IEFTN--LDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHP-CNENNGGCSHLC 677
I N G RK+ L AL+ DI + + R H C E+NGGCSHLC
Sbjct: 260 IHACNKRTGGKRKEILSALY---------SPMDIQVLSQERQPFFHTRCEEDNGGCSHLC 310
Query: 678 LIAPKDGI-RCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR 736
L++P + C CP G L+++ RTC + LL+++ +R+ISLD IVL +
Sbjct: 311 LLSPSEPFYTCACPTGVQLQDNGRTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVD 370
Query: 737 QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKI 796
++ ++D D Y+YW+D + I R D +G + LV ++N + IAVD + R +
Sbjct: 371 DIRHAIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLVNTEINDPDGIAVDWVARNL 430
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I V+ ++G + K+L +L PR+I +H +GLM W DW N +IE
Sbjct: 431 YWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIALHPVMGLMYWTDWGE----NPKIEC 486
Query: 857 AHMDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQS 915
A++DG R V + WP+ LA+D + KLYW D IE + G +R
Sbjct: 487 ANLDGQERRVLVNASLGWPNGLALDLQEG-KLYWGDAKTDKIEVINV-DGTKRRTLLEDK 544
Query: 916 --HPYTLTVLDYYVYWTDVQHSKIYRANKYDV-KDIVEFAQVDRPWL--VRAAQNISFPN 970
H + T+L ++YWTD Q I R +K +D++ D L V A+ + N
Sbjct: 545 LPHIFGFTLLGDFIYWTDWQRRSIERVHKVKASRDVIIDQLPDLMGLKAVNVAKVVG-TN 603
Query: 971 ACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLD 1030
C NGGCSHLC P C CP G+ L +D ++C FL++TSR I RISL+
Sbjct: 604 PCADRNGGCSHLCFFTPHATRCGCPIGLELLSDMKTCIV-PEAFLVFTSR-AAIHRISLE 661
Query: 1031 TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090
T + V +P + D+ S N IY+ D+ + M+ S+ ++ +
Sbjct: 662 TNNN-DVAIPLTGVKEASALDFDVSNNHIYWTDVSLKTISRAFMNGSS-VEHVVEFGLDY 719
Query: 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSH 1149
+ +DW+ N+Y+ D+ + I VAR DGQ +++LV DL P ++A+ P +G ++++
Sbjct: 720 PEGMAVDWMGKNLYWADTGTNRIEVARLDGQFRQVLVWRDLDNPRSLALDPTKGYIYWTE 779
Query: 1150 WGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
WG P +I + ++DG+ LV++ + N+L ID+ +RL+W D IE +
Sbjct: 780 WG---GKP--RIVRAFMDGTNCMTLVDK-VGRANDLTIDYADQRLYWTDLDTNMIESSNM 833
Query: 1210 FGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257
G+ R +VI+ P+ + Q + +YWTDW S+ A + S
Sbjct: 834 LGQER-VVIADDLPHPFGLTQ-----YSDYIYWTDWNLHSIERADKTS 875
|
|
| UNIPROTKB|F1P1P9 LRP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1403 (498.9 bits), Expect = 4.0e-177, Sum P(2) = 4.0e-177
Identities = 314/864 (36%), Positives = 470/864 (54%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTES 529
+AI W + LYW D I ++ +GT + +I N +P + +D +YWT+
Sbjct: 822 LAIDW--VTNKLYWTDAGTDRIEVSNTDGTMRTVLIWENLDRPRDIVVDPVGGFMYWTDW 879
Query: 530 EYN-WIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
N IE + +D + ++ NL+ P +A++ +YW G + IE A +DGS+R
Sbjct: 880 GANPKIERAGMDASNRLVIISSNLTWPNGLAIDYESQRLYWADAG-MKTIEYASLDGSNR 938
Query: 589 HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNL-DGTRKQTLIALHHLKVMTKVV 647
+L +L +P GL L R+YW + K+I+ + G ++TL +
Sbjct: 939 KVLIGSNLPHPFGLT--LYGERIYWTDWQAKSIQSADRRTGQARETL--------QDNLE 988
Query: 648 GLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLREDRRTCSENP 706
L DI +FHR R PC NNGGCSHLCL+AP G C CP G L+ D +TCS
Sbjct: 989 NLMDIHVFHRHRPPVRTPCEVNNGGCSHLCLLAPLPKGYSCTCPTGINLQSDGKTCSTGM 1048
Query: 707 SKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNEYIYWSDISEKTIER 765
+ FL+ ++ IR +SLD+ Y +V+ + +K ++ VD +YWSD + + I R
Sbjct: 1049 TSFLIFARRTDIRMVSLDIPYFADVVVSVNVTMKNTIAIGVDPHEGKVYWSDSTLRKISR 1108
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
D + E ++ L T+ +AVDAIGRKIYWTD I V ++DG KVL W NL
Sbjct: 1109 AALDGSKFEDIITTGLLTTDGLAVDAIGRKIYWTDTGTNRIEVGNLDGSMRKVLVWQNLD 1168
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSDN 884
PR+I +++ +G M W DW N ++E + MDG+ R V + + WP+ LA+D + +
Sbjct: 1169 SPRAIALYHEMGYMYWTDWGE----NAKLERSGMDGSGRVVLISNNLGWPNGLAVDKAGS 1224
Query: 885 PKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944
+L W D IE L + + HPY LT+LD Y+YWTD Q I+RA+K
Sbjct: 1225 -QLLWADAHTERIEAADLNGANRRTLLSPVQHPYGLTLLDSYIYWTDWQTRSIHRADKDS 1283
Query: 945 VKDIVEFAQVDRPWL--VRA---AQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGIL 999
+++ + + P L ++A A+ + F N CG NGGCSHLCL +PT F+CACPTGI
Sbjct: 1284 GANVI-LVRANLPGLMDIQAVDRARPLGF-NKCGVRNGGCSHLCLPHPTGFSCACPTGIQ 1341
Query: 1000 LSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLI 1059
L D ++C S +LL++SR IRRISLDT+D V +P PE + I DY I
Sbjct: 1342 LKRDEQTCDSSPETYLLFSSRAS-IRRISLDTSDHTDVHIPVPELNNVISLDYDSVDGKI 1400
Query: 1060 YFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119
Y+ D+ +R D++ S I T D +DWVA N+Y+ D+ +T+ VAR D
Sbjct: 1401 YYTDVFLDVIRRSDLNGSNMETVIGQGLKTT-DGLAVDWVARNLYWTDTGRNTVEVARLD 1459
Query: 1120 GQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED 1178
G +K+L+N+ L EP AIAV+P++G LF++ WG KIE+ LDGS R +L+ D
Sbjct: 1460 GSSRKVLINNSLDEPRAIAVFPKKGYLFWTDWG-----HIAKIERANLDGSERKILINTD 1514
Query: 1179 LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFI 1237
L +PN L +D+ RR++W D+ RIE CD G+ R++++S+V+ P+ L+ +
Sbjct: 1515 LGWPNGLTLDYDTRRIYWVDAHLDRIESCDLNGKLRQVLVSQVSHPFALTQQDR------ 1568
Query: 1238 VELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGG 1297
+YWTDW+ S I R +G+ + + +N E ++I +S +Q N C +NGG
Sbjct: 1569 -WIYWTDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQRQTGTNACGVNNGG 1624
Query: 1298 CSHLCFYKGRTKGYVCGCPDDLEP 1321
C+HLCF + C D P
Sbjct: 1625 CTHLCFARASDFVCACPDEPDGRP 1648
|
|
| UNIPROTKB|J9P7Q4 LRP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1406 (500.0 bits), Expect = 1.3e-174, Sum P(2) = 1.3e-174
Identities = 315/878 (35%), Positives = 475/878 (54%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
T + V+ +++S +A + + LYW D I A+ +G+ + +I N +P +
Sbjct: 853 TGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRIEVANTDGSMRTVLIWENLDRPRDI 912
Query: 516 AIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD 574
++ +YWT+ IE + +D + ++ NL+ P +A++ +YW G
Sbjct: 913 VVEPMGGYMYWTDWGASPKIERAGMDASSRQVIISSNLTWPNGLAIDYGSQRLYWADAG- 971
Query: 575 LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN-LDGTRKQT 633
+ IE AG+DGS R +L L +P GL L R+YW + K+I+ + L G ++T
Sbjct: 972 MKTIEFAGLDGSKRKVLIGSQLPHPFGLT--LYGERIYWTDWQTKSIQSADRLTGLDRET 1029
Query: 634 LIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPAG 692
L + L DI +FHRRR + PC NGGCSHLCL +P G C CP G
Sbjct: 1030 L--------QENLENLMDIHVFHRRRPPVSTPCARENGGCSHLCLRSPNPSGFSCTCPTG 1081
Query: 693 NLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNE 751
L D +TCS + FL+ ++ IR +SLD+ Y +V+P+ +K ++ VD +
Sbjct: 1082 INLMSDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINITMKNTIAIGVDPQEG 1141
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
+YWSD + +I R D + E ++ L T+ +AVDAIGRK+YWTD I V ++
Sbjct: 1142 KVYWSDSTLHSISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGNL 1201
Query: 812 DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEV 871
DG KVL W NL PR+IV+++ +G M W DW N ++E + MDG++R V +
Sbjct: 1202 DGSMRKVLVWENLDSPRAIVLYHEMGFMYWTDWGE----NAKLERSGMDGSDRTVLISNN 1257
Query: 872 I-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWT 930
+ WP+ L +D + + +L W D IE L G + HPY LT+LD Y+YWT
Sbjct: 1258 LGWPNGLTVDKASS-QLLWADAHTERIEAADLNGGSRHTLVSPVQHPYGLTLLDSYIYWT 1316
Query: 931 DVQHSKIYRANKYDVKDIVEFAQVDRPWL--VRA---AQNISFPNACGSNNGGCSHLCLR 985
D Q I+RA+K +++ + + P L ++A AQ + F N CGS NGGCSHLCL
Sbjct: 1317 DWQTRSIHRADKGTGSNVI-LVRSNLPGLMDIQAVDRAQPLGF-NKCGSRNGGCSHLCLP 1374
Query: 986 NPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYM 1045
P+ F+CACPTGI L D ++C +LL++SR G IRRISLDT+D V +P PE
Sbjct: 1375 RPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSR-GSIRRISLDTSDHTDVHIPVPELN 1433
Query: 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYY 1105
+ I DY +Y+ D+ +R D++ S I T D +DWVA N+Y+
Sbjct: 1434 NVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTT-DGLAVDWVARNLYW 1492
Query: 1106 IDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164
D+ +TI +R DG +K+L+N+ L EP AIAV+PR+G LF++ WG KIE+
Sbjct: 1493 TDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWG-----HIAKIERA 1547
Query: 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-P 1223
LDGS R VL+ DL +PN L +D+ RR++W D+ RIE D G+ R++++S V+ P
Sbjct: 1548 NLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLLSHVSHP 1607
Query: 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISAS 1283
+ L+ + +YWTDW+ S I R +G+ + + +N E ++I +S
Sbjct: 1608 FALTQQDR-------WIYWTDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSPQ 1657
Query: 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEP 1321
+Q N C +NGGC+HLCF + C D P
Sbjct: 1658 RQTGTNACGVNNGGCTHLCFARASDFVCACPDEPDGRP 1695
|
|
| UNIPROTKB|F1PST3 LRP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.2e-174, Sum P(2) = 2.2e-174
Identities = 315/879 (35%), Positives = 476/879 (54%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGE-INRAHINGTFQYNVIRHNTKKPAG 514
T + V+ +++S +A + + LYW D + I A+ +G+ + +I N +P
Sbjct: 803 TGQEVVVDTSLESPAGLAIDWVTNKLYWTDAAGAQRIEVANTDGSMRTVLIWENLDRPRD 862
Query: 515 VAIDWRTNKLYWTE-SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWG 573
+ ++ +YWT+ IE + +D + ++ NL+ P +A++ +YW G
Sbjct: 863 IVVEPMGGYMYWTDWGASPKIERAGMDASSRQVIISSNLTWPNGLAIDYGSQRLYWADAG 922
Query: 574 DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN-LDGTRKQ 632
+ IE AG+DGS R +L L +P GL L R+YW + K+I+ + L G ++
Sbjct: 923 -MKTIEFAGLDGSKRKVLIGSQLPHPFGLT--LYGERIYWTDWQTKSIQSADRLTGLDRE 979
Query: 633 TLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPK-DGIRCVCPA 691
TL + L DI +FHRRR + PC NGGCSHLCL +P G C CP
Sbjct: 980 TL--------QENLENLMDIHVFHRRRPPVSTPCARENGGCSHLCLRSPNPSGFSCTCPT 1031
Query: 692 GNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKN 750
G L D +TCS + FL+ ++ IR +SLD+ Y +V+P+ +K ++ VD +
Sbjct: 1032 GINLMSDGKTCSPGMNSFLIFARRIDIRMVSLDIPYFADVVVPINITMKNTIAIGVDPQE 1091
Query: 751 EYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSD 810
+YWSD + +I R D + E ++ L T+ +AVDAIGRK+YWTD I V +
Sbjct: 1092 GKVYWSDSTLHSISRANLDGSQHEDIITTGLQTTDGLAVDAIGRKVYWTDTGTNRIEVGN 1151
Query: 811 IDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE 870
+DG KVL W NL PR+IV+++ +G M W DW N ++E + MDG++R V +
Sbjct: 1152 LDGSMRKVLVWENLDSPRAIVLYHEMGFMYWTDWGE----NAKLERSGMDGSDRTVLISN 1207
Query: 871 VI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYW 929
+ WP+ L +D + + +L W D IE L G + HPY LT+LD Y+YW
Sbjct: 1208 NLGWPNGLTVDKASS-QLLWADAHTERIEAADLNGGSRHTLVSPVQHPYGLTLLDSYIYW 1266
Query: 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWL--VRA---AQNISFPNACGSNNGGCSHLCL 984
TD Q I+RA+K +++ + + P L ++A AQ + F N CGS NGGCSHLCL
Sbjct: 1267 TDWQTRSIHRADKGTGSNVI-LVRSNLPGLMDIQAVDRAQPLGF-NKCGSRNGGCSHLCL 1324
Query: 985 RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEY 1044
P+ F+CACPTGI L D ++C +LL++SR G IRRISLDT+D V +P PE
Sbjct: 1325 PRPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSR-GSIRRISLDTSDHTDVHIPVPEL 1383
Query: 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104
+ I DY +Y+ D+ +R D++ S I T D +DWVA N+Y
Sbjct: 1384 NNVISLDYDSVDGKVYYTDVFLDVIRRADLNGSNMETVIGRGLKTT-DGLAVDWVARNLY 1442
Query: 1105 YIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163
+ D+ +TI +R DG +K+L+N+ L EP AIAV+PR+G LF++ WG KIE+
Sbjct: 1443 WTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWG-----HIAKIER 1497
Query: 1164 VYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA- 1222
LDGS R VL+ DL +PN L +D+ RR++W D+ RIE D G+ R++++S V+
Sbjct: 1498 ANLDGSERKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLLSHVSH 1557
Query: 1223 PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISA 1282
P+ L+ + +YWTDW+ S I R +G+ + + +N E ++I +S
Sbjct: 1558 PFALTQQDR-------WIYWTDWQTKS--IQRVDKYSGR-NKETVLANVEGLMDIIVVSP 1607
Query: 1283 SKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEP 1321
+Q N C +NGGC+HLCF + C D P
Sbjct: 1608 QRQTGTNACGVNNGGCTHLCFARASDFVCACPDEPDGRP 1646
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9QYP1 | LRP4_RAT | No assigned EC number | 0.3856 | 0.9496 | 0.6640 | yes | N/A |
| O75096 | LRP4_HUMAN | No assigned EC number | 0.3823 | 0.9466 | 0.6619 | yes | N/A |
| Q8VI56 | LRP4_MOUSE | No assigned EC number | 0.3875 | 0.9489 | 0.6635 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1332 | |||
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 5e-13 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 1e-11 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 1e-10 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-10 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 2e-09 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-08 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 6e-08 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 8e-08 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 9e-08 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-07 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-07 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 6e-07 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 5e-06 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 5e-06 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 1e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 2e-05 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 4e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 5e-05 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 8e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 9e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-04 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-04 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 0.002 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 0.003 | |
| PLN02919 | 1057 | PLN02919, PLN02919, haloacid dehalogenase-like hyd | 0.003 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-13
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
C P+E RC G CI +W+CDG DC G DE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
|
Length = 35 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-11
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
C PDE +C +G CI +W+CDG PDC G DE+NC
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
|
Length = 37 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90
C P E +C G CI +W+CDG+ DC G DE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-10
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 284 KVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRR 326
+ +L+ + PNGL +D+ E RLYWT+ IE ++LDG+ R
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-09
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 261 FVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTID 300
++WTD I +++GS+R+ + +E++ WPNG+ +D
Sbjct: 2 RLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-08
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 774 ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN 815
L+ + L +AVD I ++YWTD I V+++DG N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-08
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 240 KILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNR 283
+ L+++ + P + V + ++WTDWG IE +DG+NR
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-08
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 504 VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGT 542
++ P G+A+DW +LYWT+ + IEV+NLDGT
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-08
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 589 HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
L S L +P GLA+D RLYW + GL IE NLDGT
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 202 TGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNR 239
+G+ L+VDW+ ++WTD +E +LDG NR
Sbjct: 6 SGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1173 VLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR 1214
L+ L PN LA+D+ + RL+W D IE + G +R
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-07
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 567 MYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAID 605
+YW I +A ++GS R L S+ L+ P G+A+D
Sbjct: 3 LYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+C G CIP+ W CD E DC G DE C
Sbjct: 7 RC-ANGRCIPSSWVCDGEDDCGDGSDEENC 35
|
Length = 35 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 550 QNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
L P +AV+ I G +YW WG L IE+A +DG++R
Sbjct: 6 SGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 794 RKIYWTDMNAQ-TIMVSDIDGKNAKVLFWLNLYRPRSIVVHY 834
++YWTD + + +I V+D++G + + LF +L P I V
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-05
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 304 DRLYWTEAK-HHFIESSDLDGSRRQQVITKGLPHPFGITLYE 344
RLYWT++ I +DL+GS R+ + ++ L P GI +
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-05
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+C +G CIP W CD + DCE G DE C
Sbjct: 9 QC-GSGECIPMSWVCDGDPDCEDGSDEKNC 37
|
Length = 37 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-05
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 217 DFVFWTDTAARRVEFC-DLDGKNRKILIANNIDKPRAVIVHP 257
++WTD++ R DL+G +R+ L + ++ P + V P
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-05
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47
P +C G CIP+ W CD DC G DE
Sbjct: 4 PGEFQC-DNGRCIPSSWVCDGVDDCGDGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-05
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 327 QQVITKGLPHPFGITL--YEDFVFWTDWHTKSISSANKYTGRN 367
+ +++ GL HP G+ + E ++WTDW I AN G N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 732 VLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGR 773
L L + VD +YW+D IE D T R
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 823 NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR 864
L P + V + G + W DW + IE+A++DGTNR
Sbjct: 7 GLGHPNGLAVDWIEGRLYWTDWGL-----DVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1101 NNIYYID-SQMHTINVARSDGQHKKILV-NDLMEPLAIAVYP 1140
+Y+ D S +I+VA +G ++ L DL P IAV P
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 864 RAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE 898
R + + + P+ LA+D+ + +LYW D IE
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEG-RLYWTDWGLDVIE 34
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.003
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 1144 LLFYSHWGLYDNSPT-TKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202
L +Y L D++P +EK D R L+ L FP +LAID RLF +DS +
Sbjct: 536 LQYYGEKKLLDSTPLPLSLEK---DNDPR--LLTSPLKFPGKLAIDLLNNRLFISDSNHN 590
Query: 1203 RIEYCDFFG 1211
RI D G
Sbjct: 591 RIVVTDLDG 599
|
Length = 1057 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1332 | |||
| KOG1215|consensus | 877 | 100.0 | ||
| KOG1215|consensus | 877 | 100.0 | ||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1214|consensus | 1289 | 100.0 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.74 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.72 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.49 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.34 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.33 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.28 | |
| KOG4659|consensus | 1899 | 99.25 | ||
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 99.1 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.09 | |
| KOG4659|consensus | 1899 | 99.03 | ||
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 99.03 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 99.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.99 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 98.98 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.98 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.94 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.94 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.89 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.89 | |
| KOG4499|consensus | 310 | 98.87 | ||
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.84 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.79 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.79 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.75 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 98.74 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.73 | |
| KOG1520|consensus | 376 | 98.71 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.71 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 98.64 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 98.6 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.5 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.5 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.45 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.44 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.41 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 98.38 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.37 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.34 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.32 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.21 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.15 | |
| KOG1520|consensus | 376 | 98.15 | ||
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.05 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.02 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.0 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.94 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 97.94 | |
| KOG4499|consensus | 310 | 97.91 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.74 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.71 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.68 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.66 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.57 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.51 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.49 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 97.48 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 97.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.42 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.36 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.35 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 97.34 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.33 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.27 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 97.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.23 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.23 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.22 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.09 | |
| KOG2397|consensus | 480 | 97.07 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.01 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.01 | |
| KOG0318|consensus | 603 | 96.97 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.94 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 96.94 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.92 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.9 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.83 | |
| KOG2397|consensus | 480 | 96.49 | ||
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 96.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.41 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.35 | |
| PTZ00421 | 493 | coronin; Provisional | 96.32 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 96.21 | |
| KOG1446|consensus | 311 | 96.2 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.04 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.03 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 95.97 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 95.95 | |
| PTZ00420 | 568 | coronin; Provisional | 95.58 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 95.56 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 95.55 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.34 | |
| KOG3509|consensus | 964 | 95.17 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.94 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.67 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 94.46 | |
| KOG0315|consensus | 311 | 94.38 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.31 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 93.98 | |
| KOG3509|consensus | 964 | 93.87 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.73 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.54 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 93.29 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 93.14 | |
| KOG1219|consensus | 4289 | 93.1 | ||
| KOG0291|consensus | 893 | 92.98 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 92.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 92.61 | |
| KOG1446|consensus | 311 | 92.57 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 92.48 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.33 | |
| KOG0279|consensus | 315 | 92.12 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.76 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 91.64 | |
| KOG0266|consensus | 456 | 91.25 | ||
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 91.2 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.2 | |
| KOG0273|consensus | 524 | 91.19 | ||
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 91.09 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 91.06 | |
| PF09064 | 34 | Tme5_EGF_like: Thrombomodulin like fifth domain, E | 90.96 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 90.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 90.76 | |
| KOG0266|consensus | 456 | 90.51 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 90.24 | |
| KOG0286|consensus | 343 | 90.01 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 89.89 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 89.78 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 89.72 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 89.68 | |
| KOG0315|consensus | 311 | 89.5 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 89.37 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 88.74 | |
| KOG0294|consensus | 362 | 88.63 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.57 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 88.35 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 87.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 87.63 | |
| KOG4378|consensus | 673 | 87.08 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 86.6 | |
| KOG0319|consensus | 775 | 86.22 | ||
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 86.22 | |
| KOG0310|consensus | 487 | 85.99 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 85.23 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.94 | |
| KOG0291|consensus | 893 | 84.5 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 84.19 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 83.59 | |
| KOG2139|consensus | 445 | 83.51 | ||
| KOG0293|consensus | 519 | 83.5 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 83.47 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 83.27 | |
| KOG0289|consensus | 506 | 83.08 | ||
| PTZ00420 | 568 | coronin; Provisional | 82.32 | |
| KOG4649|consensus | 354 | 82.13 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 82.09 | |
| KOG4289|consensus | 2531 | 82.03 | ||
| KOG0293|consensus | 519 | 82.02 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 81.66 | |
| KOG1407|consensus | 313 | 81.62 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 81.25 | |
| KOG0277|consensus | 311 | 80.63 | ||
| PF09064 | 34 | Tme5_EGF_like: Thrombomodulin like fifth domain, E | 80.52 | |
| KOG0285|consensus | 460 | 80.39 | ||
| PTZ00421 | 493 | coronin; Provisional | 80.08 |
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=786.96 Aligned_cols=830 Identities=36% Similarity=0.621 Sum_probs=701.6
Q ss_pred CceEEEcCCCCeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeeecCCCeEEEEeCCCCeEEEEeCCCCcEEEE
Q psy5806 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQV 329 (1332)
Q Consensus 250 pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~~~~rlYw~D~~~~~i~~~~~dG~~~~~v 329 (1332)
||+||++|..++|||||||. . || ||+.++.++.+.+.||||++||+..+++||+|++.+.|++.++||+.|+
T Consensus 1 pra~~~~p~~~~l~wtd~~~-~-i~----dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~-- 72 (877)
T KOG1215|consen 1 PRAIALLPLEGLLFWTDWGA-N-IE----DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR-- 72 (877)
T ss_pred CceEEeccccceEEEecCCc-c-cc----cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEeccCCccce--
Confidence 89999999999999999998 4 88 8899999999999999999999999999999999999999999999887
Q ss_pred EcCCCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCceeEEEecCCCCccccccCCC---Ccceeeec
Q psy5806 330 ITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAP---KVCSHICL 406 (1332)
Q Consensus 330 ~~~~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~~~h~~~qp~~~n~C~~---g~CshlCl 406 (1332)
+|++|++++||+| +.|.+++|.+|+....+....+.|+.++++|+.+||...++|.. .+|+|.|+
T Consensus 73 ---------~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (877)
T KOG1215|consen 73 ---------ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCL 140 (877)
T ss_pred ---------eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccC
Confidence 8999999999999 78899999999999888777777999999999999999999983 58999999
Q ss_pred cCCC--ceEEeCCCCceecCCCCCcCCCccceeEeeecccccccccCCCCCceeeEEeeeeccceEEEEEEccCCeEEEE
Q psy5806 407 PNKH--RFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWA 484 (1332)
Q Consensus 407 ~~~~--~~~C~C~~G~~L~~d~~tC~~~~~~~ll~~~~~~i~~~~l~~~~~~~~~~~p~~~~~~~~~i~~d~~~~~lyws 484 (1332)
.... .++|+|+.+..+-.+...|..+.+..+.......+++..+.. ....++.......++++|..++.+||+
T Consensus 141 ~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~d~~~~~~~~~ 215 (877)
T KOG1215|consen 141 DKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDC-----IVAIKVCDIQHDCADDYDESEGRIYWT 215 (877)
T ss_pred CCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCcccccccc-----ceeeeecCcccccccccccccCccccc
Confidence 8876 459999999999877789988765544443333344333322 124444556667777777777777777
Q ss_pred cCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCC
Q psy5806 485 DVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIG 564 (1332)
Q Consensus 485 D~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~ 564 (1332)
+.. +|++...+|+.+.+.++...+.|+++++.|..
T Consensus 216 ~~~---------------------------------------------~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de 250 (877)
T KOG1215|consen 216 DDS---------------------------------------------RIEVTRCDGSSRCILISEVCDGPRDCVDGPDE 250 (877)
T ss_pred CCc---------------------------------------------ceeEEEecCCCcEEeehhccCCCcccccCCcC
Confidence 643 78999999988888888899999999999999
Q ss_pred CeEEEEecCC-CCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEe--ecc--
Q psy5806 565 GIMYWCSWGD-LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA--LHH-- 639 (1332)
Q Consensus 565 G~lywtd~g~-~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~--~~~-- 639 (1332)
|++||++++. .+.++.+.+++..+..+....+.+|+|++.|+..+.+|| ..++|+..++ |.. +.|
T Consensus 251 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~~~~~~~~ 320 (877)
T KOG1215|consen 251 GVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILLSKLCHGY 320 (877)
T ss_pred ceeEeeccccCCcceeecCCCCccceEEecCccCCCCcccccccccceee---------eeecccCCce-eeecccCccc
Confidence 9999999874 478999999999999999888999999999999999999 7788888876 543 332
Q ss_pred --------eEE------------EeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCC
Q psy5806 640 --------LKV------------MTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699 (1332)
Q Consensus 640 --------l~v------------~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~ 699 (1332)
+.. .......++..+++....+..++|...||+|+|+|++.....+.|.|+.||.+..++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 321 WTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred cccccccchhhcccccCCCCccccCCcccCCccceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCC
Confidence 000 112233456666666555567999999999999999653339999999999999988
Q ss_pred CccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeC
Q psy5806 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN 779 (1332)
Q Consensus 700 ~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~ 779 (1332)
..+...+..||+++.+.+|++++++.. ++..|+.++.++.++++|..++++||+|.....|.+...++.....+...
T Consensus 401 c~~~~~~~~~l~~s~~~~ir~~~~~~~---~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~ 477 (877)
T KOG1215|consen 401 CEASDQPEAFLLFSNRHDIRRISLDCS---DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGD 477 (877)
T ss_pred ceecCCCCcEEEEecCccceecccCCC---cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEecc
Confidence 333344789999999999999999875 67788888899999999999999999999999999999999888888888
Q ss_pred CCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec
Q psy5806 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859 (1332)
Q Consensus 780 ~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~ 859 (1332)
++..++|||+||+++++||+|.....|++.+++|+.+.+++...+..|+.++++|..|++||++|+.. ++|+|+.|
T Consensus 478 g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~----~~i~ra~~ 553 (877)
T KOG1215|consen 478 GLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP----PRIERASL 553 (877)
T ss_pred CccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCC----chhhhhcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999987 79999999
Q ss_pred CCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCC-eEEEEccCCCcee-EEeccCCcceEEEEeCCEEEEEeCCCCE
Q psy5806 860 DGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKH-TIEYKTLATGRAK-RAYAVQSHPYTLTVLDYYVYWTDVQHSK 936 (1332)
Q Consensus 860 dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~-~I~~~~~dG~~~~-~l~~~~~~P~~la~~~~~iywtD~~~~~ 936 (1332)
||+.+..++.. +.||+||++|... +++||+|+... .|++++++|..++ +....+.||++++++++++||+||....
T Consensus 554 dg~~~~~l~~~~~~~p~glt~d~~~-~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~ 632 (877)
T KOG1215|consen 554 DGSERAVLVTNGILWPNGLTIDYET-DRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRA 632 (877)
T ss_pred CCCCceEEEeCCccCCCcceEEeec-ceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccc
Confidence 99999999988 9999999999999 99999999998 8999999999998 3334899999999999999999999999
Q ss_pred EEEEECCCC-e--EEEeeee--cCcceEE-e-ccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 937 IYRANKYDV-K--DIVEFAQ--VDRPWLV-R-AAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 937 i~~~~~~~g-~--~i~~~~~--~~i~~~~-~-~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+.+..+..+ . .++.+.. +.+. ++ + ..++.+ .|+|+.+||+|+|||++.|...+|+||+|+.|..++++|..
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~ 710 (877)
T KOG1215|consen 633 ISRAEKHKGSDSRTSRSNLAQPLDII-LVHHSSSRPTG-VNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSS 710 (877)
T ss_pred eEeeecccCCcceeeecccCcccceE-EEeccccCCCC-CCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecC
Confidence 999998888 3 3333333 4444 34 2 334555 99999999999999999999889999999999999999997
Q ss_pred cCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1010 RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1010 ~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
+..+++++.+.. |+.++.+.........+.. +...+..+|+....+...+...+ ......++.....
T Consensus 711 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 777 (877)
T KOG1215|consen 711 -PEGYLLITSRTG-IPCISLDSELSPDQPLEDG----------DTIDRLEYWTDVRVGVAAVSSQN-CAPGYDLVGEGEP 777 (877)
T ss_pred -cccccccccccc-cceeecCcccCCCcccCCC----------cccccceecccccceeeEEEecC-CCCccccccccCC
Confidence 788999999999 9999988665554333322 67778899998777666655544 3333335556677
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCce-------EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEE
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-------KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIE 1162 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-------~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~ 1162 (1332)
.+.++|+++..+.|||+....+.|.+..+++.. ..+.......|+.+.+.|..+.++|+++.. .+.|.
T Consensus 778 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 852 (877)
T KOG1215|consen 778 PPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEP-----GPKIP 852 (877)
T ss_pred CCCCceeehhhcceEEEeecccEEEEEEEeeecccccccccccccCCCCCCcceeeccccceeccCCccc-----cceee
Confidence 899999999999999999999999999988742 111334567899999999999999999833 58999
Q ss_pred EEecCCCceEEEEecCCCCcceEEE
Q psy5806 1163 KVYLDGSYRTVLVEEDLAFPNELAI 1187 (1332)
Q Consensus 1163 r~~ldG~~~~~l~~~~l~~p~glai 1187 (1332)
+..+++.+...++...+..|+++++
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (877)
T KOG1215|consen 853 RSALDGSERLVLFKSLLSCPNALAL 877 (877)
T ss_pred ecccccccccceeccCCCCccCCCC
Confidence 9999999999999888899998863
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=640.73 Aligned_cols=765 Identities=30% Similarity=0.538 Sum_probs=614.8
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCEEecCCC--
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP----------------------PKKCSPDEHRCTTGH-- 70 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~----------------------~~~C~~~~f~C~~g~-- 70 (1332)
+.+.+|.|. +|.+|...|.|+...|+....+|..+..... ........+...+..
T Consensus 31 ~~~~~~~~~-ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~~~~ 109 (877)
T KOG1215|consen 31 LEKEEFEWP-NGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDSHFP 109 (877)
T ss_pred eeccceeCC-CcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehhcCCCC
Confidence 567799999 8899999999999999999999987743221 011122233333332
Q ss_pred EEEeeeecCCCCCCCCCCCcc-c--ccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCC
Q psy5806 71 CILKTWLCDGIPDCSLGEDER-N--CNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKH 147 (1332)
Q Consensus 71 Ci~~~~~CDg~~DC~DgsDE~-~--C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~d 147 (1332)
+....+++.+.+.+.+++++. + |.. |... +|.|... ...|++..|.||+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~c~~~-----------------------~~~Cip~~~~cd~~~~ 164 (877)
T KOG1215|consen 110 LDIHAYHPSSQPLAPDPCAESGNGPCSH-CCLD-KFSCRTG-----------------------SCKCIPGDWLCDGEAD 164 (877)
T ss_pred cceeEEecCCCCCCCCcccccCCCCCcc-ccCC-CCCCcCc-----------------------cccCCCCceeCCCCCc
Confidence 445999999999999999995 3 333 4444 6877631 1359999999999999
Q ss_pred CCCCCCCCCCcCCc-CcccccCcce----eEEeecccceeEEeeeccceeEEEEEEEEEecccccCceeeecccCceeee
Q psy5806 148 CPRGEEGPDERHCP-KRVSLSNKKY----TAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWT 222 (1332)
Q Consensus 148 C~dg~de~d~~~C~-~~~~~~~~~~----~~~~~~~~~~~a~d~~~~~~~iywsd~v~~~g~~~~~~lavDWi~~~lYw~ 222 (1332)
|.+|+|| ..|. +...+....+ ...+-+..+..++++ |=....+||+
T Consensus 165 C~dg~de---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------------------d~~~~~~~~~ 215 (877)
T KOG1215|consen 165 CPDGSDE---LNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDY--------------------------DESEGRIYWT 215 (877)
T ss_pred cccchhh---hcccccccCccccccccceeeeecCccccccccc--------------------------ccccCccccc
Confidence 9999999 3342 1121111111 111122233334444 4445556665
Q ss_pred cCCCCeEEEEcCCCCceEEEEeCCCCCCceEEEcCCCCeEEEEecCC-CCceeEecCCCCCcEEEecCCccCceeeeeec
Q psy5806 223 DTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301 (1332)
Q Consensus 223 d~~~~~I~v~~~dg~~~~~l~~~~~~~pr~iavdp~~g~~fwtd~g~-~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~ 301 (1332)
+.. +|++...+|+.+++.....++.|+.++..|.+|++||++|+. .+.|+.+.++++.+..+.+..+.||+|+++|+
T Consensus 216 ~~~--~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~ 293 (877)
T KOG1215|consen 216 DDS--RIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDY 293 (877)
T ss_pred CCc--ceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCCCCcccccc
Confidence 543 799999999989999999999999999999999999999984 68999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCcEEEEEcCCCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCceeE
Q psy5806 302 EEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381 (1332)
Q Consensus 302 ~~~rlYw~D~~~~~i~~~~~dG~~~~~v~~~~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i 381 (1332)
..+.+|| ..++|+.+++ |+...+.|+ ||++|....+.+..+.++....+........++.
T Consensus 294 ~~~~~~~---------~~~~d~~~~~-i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 353 (877)
T KOG1215|consen 294 CKKKLYW---------SMNVDGSGRR-ILLSKLCHG----------YWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGA 353 (877)
T ss_pred cccceee---------eeecccCCce-eeecccCcc----------ccccccccchhhcccccCCCCccccCCcccCCcc
Confidence 9999999 6789999998 887777776 6999999888887777766554444433333444
Q ss_pred EEecCCCCccccccCC--CCcceeeecc-CCCceEEeCCCCceecCCCCCcC--CCccceeEeeecccccccccCCCCCc
Q psy5806 382 RSYHPHRQPNYQSHCA--PKVCSHICLP-NKHRFTCQCPLGLTLSPDNKSCS--ESPEELLIYARQKDLRISQLTEPSPT 456 (1332)
Q Consensus 382 ~~~h~~~qp~~~n~C~--~g~CshlCl~-~~~~~~C~C~~G~~L~~d~~tC~--~~~~~~ll~~~~~~i~~~~l~~~~~~ 456 (1332)
..++..... ..++|. +|+|+|+|++ .+++++|.|+.||.+..++ |. ...+.||+++++..||.++++..
T Consensus 354 ~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~~~--- 427 (877)
T KOG1215|consen 354 KVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLDCS--- 427 (877)
T ss_pred ceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccCCC---
Confidence 444433322 456676 8999999995 5789999999999998888 54 34577999999999999999876
Q ss_pred eeeEEeeeeccceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEE
Q psy5806 457 FETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536 (1332)
Q Consensus 457 ~~~~~p~~~~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v 536 (1332)
+...|+..+.++.++++|..++++||+|.....|.+...++.....+...+...|.|||+||+.+++||+|.....|++
T Consensus 428 -~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v 506 (877)
T KOG1215|consen 428 -DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEV 506 (877)
T ss_pred -cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEE
Confidence 3477888888899999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred EeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeC
Q psy5806 537 SNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616 (1332)
Q Consensus 537 ~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~ 616 (1332)
.+++|..+.+|+...+..||+++|+|..|+|||+||+..++|+|+.|||+.+.+++..++.||+||++|+.++++||+|.
T Consensus 507 ~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~ 586 (877)
T KOG1215|consen 507 ADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA 586 (877)
T ss_pred EEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence 99999999999999999999999999999999999998779999999999999999999999999999999999999999
Q ss_pred CCC-eEEEEecCCCceEEEEe--ecc---eEE-----------------------Ee------eecCceeEEEE-eCCCC
Q psy5806 617 GLK-TIEFTNLDGTRKQTLIA--LHH---LKV-----------------------MT------KVVGLTDIDIF-HRRRS 660 (1332)
Q Consensus 617 ~~~-~I~~~~~dG~~~~~~~~--~~~---l~v-----------------------~~------~~~~~~~i~v~-~~~~q 660 (1332)
.+. .|++++++|..|+++.. ++| +++ .. +...++.+.++ +...|
T Consensus 587 ~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (877)
T KOG1215|consen 587 KLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR 666 (877)
T ss_pred cCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC
Confidence 999 89999999999983322 666 554 00 01123444455 44333
Q ss_pred -cCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeeccccc
Q psy5806 661 -KKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLK 739 (1332)
Q Consensus 661 -~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~ 739 (1332)
+..|+|..+||+|+|||++.|... +|+||.|+.|..++++|.+ +..+++++.+..|+.+.++........++..
T Consensus 667 ~~~~n~C~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 741 (877)
T KOG1215|consen 667 PTGVNPCESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCSS-PEGYLLITSRTGIPCISLDSELSPDQPLEDG--- 741 (877)
T ss_pred CCCCCcccccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeecC-cccccccccccccceeecCcccCCCcccCCC---
Confidence 459999999999999999999855 9999999999999999997 7889999999999999988754433333221
Q ss_pred ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCC-----
Q psy5806 740 MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGK----- 814 (1332)
Q Consensus 740 ~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~----- 814 (1332)
+..++..+|++...+...+...++.....++..+...+.++|+++..+.|||+......|.+..+++.
T Consensus 742 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 814 (877)
T KOG1215|consen 742 -------DTIDRLEYWTDVRVGVAAVSSQNCAPGYDLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRR 814 (877)
T ss_pred -------cccccceecccccceeeEEEecCCCCccccccccCCCCCCceeehhhcceEEEeecccEEEEEEEeeeccccc
Confidence 66778899998887777777777666555777778899999999999999999999999999999874
Q ss_pred -ceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEE
Q psy5806 815 -NAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAI 879 (1332)
Q Consensus 815 -~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~i 879 (1332)
....+.......|+.+.+.|....++|+++... +.|.++.++|+++..++.. +..|+++++
T Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (877)
T KOG1215|consen 815 RPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEPG----PKIPRSALDGSERLVLFKSLLSCPNALAL 877 (877)
T ss_pred ccccccccCCCCCCcceeeccccceeccCCcccc----ceeeecccccccccceeccCCCCccCCCC
Confidence 223334455678999999999999999998444 8999999999999888887 889998863
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=433.19 Aligned_cols=286 Identities=30% Similarity=0.522 Sum_probs=259.2
Q ss_pred ccceEeeccceeEEEecCCCCCcc----eeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCC
Q psy5806 707 SKFLLVSQTDKIRQISLDVEYRYP----IVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLN 782 (1332)
Q Consensus 707 ~~~ll~s~~~~i~~i~l~~~~~~~----~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~ 782 (1332)
..+|||++...|..+.++...+.. .++.++ .+-+++||||.++.+|||+|+...+|.|+.++|+..++++..+|.
T Consensus 990 gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p-~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~ 1068 (1289)
T KOG1214|consen 990 GTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLP-GSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLI 1068 (1289)
T ss_pred cceEEEeccceEEEeecCcchhchhhhhceEecc-cceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCC
Confidence 469999999999999998754322 223332 456899999999999999999999999999999999999999999
Q ss_pred CccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCC
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGT 862 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~ 862 (1332)
.|+||||||++||+||+|+...+|+|+.|||+.|++|+.++|-+||+|++|+.+|.|||+||... +|+|++..|||+
T Consensus 1069 SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---nPkIets~mDG~ 1145 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---NPKIETSSMDGE 1145 (1289)
T ss_pred CccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccccc---CCcceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999876 699999999999
Q ss_pred CcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEE
Q psy5806 863 NRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941 (1332)
Q Consensus 863 ~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~ 941 (1332)
||++|++. +..||||++|... +.|.|+|+++.+++.+.++|..|+++...|+.||+|+.+++.+|||||..++|..++
T Consensus 1146 NrRilin~DigLPNGLtfdpfs-~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk~n~vvsv~ 1224 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFS-KLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWKRNGVVSVN 1224 (1289)
T ss_pred cceEEeecccCCCCCceeCccc-ceeeEEecCCcceeEecCCCCcchhhhhcccCceeeeeccccceeeccccCceEEee
Confidence 99999998 9999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeee------cCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCee
Q psy5806 942 KYDVKDIVEFAQ------VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGIL 999 (1332)
Q Consensus 942 ~~~g~~i~~~~~------~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~ 999 (1332)
+..+..-...++ ++|. ++.+..+.+ .+||+.+||||.||||++-.+..|.||+...
T Consensus 1225 ~~~~~~td~~~p~~~s~lyGIt-av~~~Cp~g-stpCSedNGGCqHLCLpgqngavcecpdnvk 1286 (1289)
T KOG1214|consen 1225 KHSGQFTDEYLPEQRSHLYGIT-AVYPYCPTG-STPCSEDNGGCQHLCLPGQNGAVCECPDNVK 1286 (1289)
T ss_pred ccccccccccccccccceEEEE-eccccCCCC-CCcccccCCcceeecccCcCCccccCCccce
Confidence 988822222222 7777 666667777 9999999999999999999999999998654
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=426.35 Aligned_cols=298 Identities=27% Similarity=0.519 Sum_probs=266.1
Q ss_pred CCcccccc---CcceEEEEeecceEEEEeCCCCCCCC----cccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECC
Q psy5806 1003 DRRSCFSR---TREFLLYTSRFGVIRRISLDTADLLP----VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS 1075 (1332)
Q Consensus 1003 d~~tC~~~---p~~~ll~~~~~~~i~~i~l~~~~~~~----~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~ 1075 (1332)
++..|... +..||||++..+ |..+++.+....+ .++.+++ +-++|||||-++++|||+|+...+|.+..|+
T Consensus 978 p~~~~~v~p~~~gt~LL~aqg~~-I~~lplng~~~~K~~ak~~l~~p~-~IiVGidfDC~e~mvyWtDv~g~SI~rasL~ 1055 (1289)
T KOG1214|consen 978 PTPRPDVTPPSVGTFLLYAQGQQ-IGYLPLNGTRLQKDAAKTLLSLPG-SIIVGIDFDCRERMVYWTDVAGRSISRASLE 1055 (1289)
T ss_pred CCCCCCCcCCCCcceEEEeccce-EEEeecCcchhchhhhhceEeccc-ceeeeeecccccceEEEeecCCCcccccccc
Confidence 45666543 467999999999 9999998764433 2233433 3478999999999999999999999999999
Q ss_pred CCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCC
Q psy5806 1076 DSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1076 ~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~ 1154 (1332)
|+..++++..++.+|+||||||+.|++||||+..++|+|+.|||+.+++ +.+++-+||+|++||.+|.||||||..
T Consensus 1056 -G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR-- 1132 (1289)
T KOG1214|consen 1056 -GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR-- 1132 (1289)
T ss_pred -CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccc--
Confidence 8999999999999999999999999999999999999999999999999 677999999999999999999999987
Q ss_pred CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCc
Q psy5806 1155 NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPG 1233 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~ 1233 (1332)
..++|++++|||+++++|+++++..||||+||+..+.|-|+|++++|++.+.++|..|+++.+ ++.||+|+-
T Consensus 1133 --enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~its----- 1205 (1289)
T KOG1214|consen 1133 --ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITS----- 1205 (1289)
T ss_pred --cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceeeee-----
Confidence 468999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred cccccEEEEEECCCCEEEEEEecCCCCcceE-EEEecCCCCeeeEEEEeCCCCCCCCCCCCCCCCCCccceeccCCCCce
Q psy5806 1234 KAFIVELYWTDWEAMSVVIAREKSDTGQWDV-HLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYV 1312 (1332)
Q Consensus 1234 ~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~~~~~~q~~~n~C~~~ng~C~~lC~~~~~~~~~~ 1312 (1332)
+++.+|||||..++|..++|+.+ +-. ..+-....++.+|.++.+.-..+.+||+.+||||.||||+. .++++
T Consensus 1206 --y~~~fY~TDWk~n~vvsv~~~~~---~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpg--qngav 1278 (1289)
T KOG1214|consen 1206 --YADHFYHTDWKRNGVVSVNKHSG---QFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPG--QNGAV 1278 (1289)
T ss_pred --ccccceeeccccCceEEeecccc---ccccccccccccceEEEEeccccCCCCCCcccccCCcceeecccC--cCCcc
Confidence 99999999999999999999987 322 23334556799999999887789999999999999999987 67899
Q ss_pred eeCCCCC
Q psy5806 1313 CGCPDDL 1319 (1332)
Q Consensus 1313 C~C~~~~ 1319 (1332)
|.||+.-
T Consensus 1279 cecpdnv 1285 (1289)
T KOG1214|consen 1279 CECPDNV 1285 (1289)
T ss_pred ccCCccc
Confidence 9999865
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-16 Score=172.37 Aligned_cols=214 Identities=23% Similarity=0.258 Sum_probs=159.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI- 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~- 1125 (1332)
+.++.|++.++.|||+|...++|+++++. +...+++. ...|.|++++...+.||+++... +.+.+++....+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~-~~~~~~~~---~~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPD-TGEVEVID---LPGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEEE---SSSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECC-CCeEEEEe---cCCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEE
Confidence 46889999999999999999999999976 33332322 22399999997789999999754 4445776443333
Q ss_pred Eec-----CCCCceEEEEcCCCcEEEEEecCCCCCCCC--CcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1126 LVN-----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPT--TKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1126 ~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~--~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
+.. .+..|+++++|| +|.||+|+.+....... ++|+|++.+|+ .+.+. .++..||||+++++++.||++|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecc
Confidence 221 467899999999 78899999765221112 67999999944 33444 4689999999999999999999
Q ss_pred cCCCeEEEEecCC--C---ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1199 STNKRIEYCDFFG--R---SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG--~---~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
+..++|++++++. . ++++++. ...|.||++ |.+|+||++++..++|.++++. | .-...+..
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v------D~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~ 222 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV------DSDGNLWVADWGGGRIVVFDPD-G---KLLREIEL 222 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE------BTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE------cCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcC
Confidence 9999999999973 3 3556655 235999999 6688999999999999999987 6 55666666
Q ss_pred CCCCeeeEEE
Q psy5806 1270 NQEDFLNIKA 1279 (1332)
Q Consensus 1270 ~~~~~~~i~~ 1279 (1332)
..+.+..+..
T Consensus 223 p~~~~t~~~f 232 (246)
T PF08450_consen 223 PVPRPTNCAF 232 (246)
T ss_dssp SSSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 6667776654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=196.68 Aligned_cols=299 Identities=17% Similarity=0.160 Sum_probs=206.7
Q ss_pred EEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec--------------cCCcceEEEEe--CCEEEE
Q psy5806 866 VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA--------------VQSHPYTLTVL--DYYVYW 929 (1332)
Q Consensus 866 ~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~--------------~~~~P~~la~~--~~~iyw 929 (1332)
.+.+.+..|.|+++|..+ ++||++|...++|..++.+|.....+.. .+..|.||++. ++.||+
T Consensus 562 ~~~s~l~~P~gvavd~~~-g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLN-NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred cccccCCCCceEEEECCC-CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 334458999999999987 8999999999999999999876544432 25679999997 568999
Q ss_pred EeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 930 tD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+|..+++|++++..++.+. .+... + . .|... ++
T Consensus 641 aDt~n~~Ir~id~~~~~V~----------tlag~---G----------~-----------------~g~~~--~g----- 673 (1057)
T PLN02919 641 ADTENHALREIDFVNETVR----------TLAGN---G----------T-----------------KGSDY--QG----- 673 (1057)
T ss_pred EeCCCceEEEEecCCCEEE----------EEecc---C----------c-----------------ccCCC--CC-----
Confidence 9999999998886655210 11100 0 0 00000 00
Q ss_pred cCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee----
Q psy5806 1010 RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---- 1085 (1332)
Q Consensus 1010 ~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---- 1085 (1332)
.. ......+..|.++++++.++.||++|..++.|+++++.++. ..++..
T Consensus 674 -----------g~---------------~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~~~~G~G~~ 726 (1057)
T PLN02919 674 -----------GK---------------KGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TRVFSGDGYE 726 (1057)
T ss_pred -----------Ch---------------hhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EEEEecCCcc
Confidence 00 00001234578999999889999999999999999876432 222111
Q ss_pred ----------cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe----------------------cCCCCc
Q psy5806 1086 ----------MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV----------------------NDLMEP 1133 (1332)
Q Consensus 1086 ----------~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~----------------------~~~~~P 1133 (1332)
.....|.|||++..++.||++|..+++|.++++++....++. ..+..|
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 124579999999988999999999999999998743322211 124579
Q ss_pred eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-------------CCCCcceEEEecCCCEEEEEEcC
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-------------DLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-------------~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
.+|++++ .|.||++|+++ ++|.+++.++.....+..+ .+..|.||++|.++ +||++|..
T Consensus 807 ~Gvavd~-dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~ 878 (1057)
T PLN02919 807 LGVLCAK-DGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTN 878 (1057)
T ss_pred ceeeEeC-CCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECC
Confidence 9999998 67899999887 8999999987766555432 24579999999765 79999999
Q ss_pred CCeEEEEecCCCce--EEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1201 NKRIEYCDFFGRSR--KIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~--~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
+++|..+|++.... ...+. ...|...+- ...+||.+....-.|..++
T Consensus 879 Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 930 (1057)
T PLN02919 879 NSLIRYLDLNKGEAAEILTLELKGVQPPRPKSK-------SLKRLRRRSSADTQVIKVD 930 (1057)
T ss_pred CCEEEEEECCCCccceeEeeccccccCCCCccc-------chhhhhhcccccCceeecC
Confidence 99999999975432 11122 333432332 5567887744444444433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=191.72 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=159.5
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-------------CCCCceeeEEEecCCeEEEEcCC
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-------------NDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-------------~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
.+..|.++++|..++.||++|...++|++++++ |.....+... .+..|.|||+|..++.|||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 456678999999999999999999999999976 5433233221 13479999999888889999999
Q ss_pred CceEEEEeeCCceEEEEec-----------------CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE
Q psy5806 1110 MHTINVARSDGQHKKILVN-----------------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT 1172 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~~~~~~~-----------------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~ 1172 (1332)
+++|+++++.+....++.. .+..|.+|+++|.+|.||+++.+. ++|++.+..+....
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVTR 718 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeEE
Confidence 9999999987665554321 156899999999999999999876 78888887654433
Q ss_pred EEEe--------------cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-------------------
Q psy5806 1173 VLVE--------------EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS------------------- 1219 (1332)
Q Consensus 1173 ~l~~--------------~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~------------------- 1219 (1332)
.+.. ..+..|+||++++++++||++|..+++|.++|+++....++..
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 3221 1356799999999999999999999999999997544333220
Q ss_pred ----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+|.||++ +.++.||++|+.+++|.+++..++
T Consensus 799 ~~~~l~~P~Gvav------d~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 799 SEVLLQHPLGVLC------AKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred hhhhccCCceeeE------eCCCcEEEEECCCCEEEEEECCCC
Confidence 358999999 456679999999999999998776
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-12 Score=142.55 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=149.7
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~ 820 (1332)
+.++.||..++.|||+|...+.|+++++++...+.+-. ..|.|++++...+.||+++... +.+.+++....+.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEEe
Confidence 45778999899999999999999999998765544333 2399999997779999999755 444476555445544
Q ss_pred ec-----CCCCCeEEEEeCCCCeEEEEecccCcCC---CCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeC
Q psy5806 821 WL-----NLYRPRSIVVHYGLGLMVWADWSRTRLT---NNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 821 ~~-----~~~~P~~Iavdp~~g~lywtd~g~~~~~---~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
.. .+..|.++++||. |.||+++.+..... .++|.|...+|+ ...+...+..||||+++.++ +.||++|.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pNGi~~s~dg-~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPNGIAFSPDG-KTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEEEEEEETTS-SEEEEEET
T ss_pred eccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEecCcccccceEECCcc-hheeeccc
Confidence 32 4567999999997 89999987644211 146888888844 34455559999999999999 99999999
Q ss_pred CCCeEEEEccCCCc-----eeEEec--c-CCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 893 SKHTIEYKTLATGR-----AKRAYA--V-QSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 893 ~~~~I~~~~~dG~~-----~~~l~~--~-~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
..++|.+++++... ++.+.. . ...|-|++++ +++||.+++..++|+++++. |+.+
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 99999999997432 344432 2 2359999998 68999999999999999988 6433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=138.38 Aligned_cols=198 Identities=21% Similarity=0.298 Sum_probs=148.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
..+..|++..+.|||+|+..++|.+++..+ +...++......+.++.+| ..++|..++.+...+.. -.|..++.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~t~~ 101 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSPGGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKITLL 101 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECCCCcccceeec-CCCeEEEEccccEEEec--cCCceeEEe
Confidence 356678999999999999999999999653 3333444455568888898 67888777755434433 224442332
Q ss_pred e-----cCCCCceEEEEcCCCcEEEEEecC-----CCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEE
Q psy5806 1127 V-----NDLMEPLAIAVYPRRGLLFYSHWG-----LYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1127 ~-----~~~~~P~~iavdp~~g~Lywtd~~-----~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~ 1196 (1332)
. ..+.+|+.+.|+| .|.+|+++.+ .......++|+|++.+|... .++...+..||||+++++++.||+
T Consensus 102 ~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECCCCCEEEE
Confidence 1 1457899999999 6999999987 22244567899999876554 455546899999999999999999
Q ss_pred EEcCCCeEEEEecC---CC--ceEEEEe----ecccceEEEecCCccccccEEE-EEECCCCEEEEEEecCC
Q psy5806 1197 ADSTNKRIEYCDFF---GR--SRKIVIS----KVAPYGLSVRQSPGKAFIVELY-WTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~d---G~--~~~~~~~----~~~P~glav~~~~~~~~~~~lY-wtd~~~~~V~~~~~~~g 1258 (1332)
+|+..++|.+++++ |. +++..+. ...|.|+++ |.++.|| .+-|+.+.|.+.++. |
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v------DadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV------DADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE------eCCCCEEEecccCCceEEEECCC-C
Confidence 99999999999998 43 3333332 589999999 7788888 666776799999988 6
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-10 Score=132.60 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=149.4
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCC-CCCcee--Eee----------cCCCCceeeEEEecCCeEEEEcCC
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD-STRIKP--IPL----------MNDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~-g~~~~~--i~~----------~~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
....|..+++++.++.||+++...+.|..++++. |.-.+. ++. .....|+.+.+++.++.||++|.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 3456889999999999999999999998888874 222222 110 123478899999999999999999
Q ss_pred CceEEEEeeCCce--E-E--EE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC--CCceEEE--Eec--
Q psy5806 1110 MHTINVARSDGQH--K-K--IL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD--GSYRTVL--VEE-- 1177 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~--~-~--~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld--G~~~~~l--~~~-- 1177 (1332)
.++|.+++++... . . .+ ...-..||+|+++|...++|+++... +.|..++++ ....+.+ +.+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESCE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC------CcEEEEeecccCCceeEEEEeeecc
Confidence 9999999998543 2 1 12 12336799999999889999998765 678877777 2222222 111
Q ss_pred -C---CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCC--ceEEE--Ee--ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1178 -D---LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR--SRKIV--IS--KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1178 -~---l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~--~~~~~--~~--~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
+ -..|.+|+|+++++.||+++...+.|..+++|.. ..+.+ +. +..|.+|++ ++.+.+||+++..+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----SPDGRYLYVANQDS 313 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------TTSSEEEEEETTT
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----eCCCCEEEEEecCC
Confidence 1 1268899999999999999999999999999643 22222 22 678999999 77899999999999
Q ss_pred CEEEEEEe--cCC
Q psy5806 1248 MSVVIARE--KSD 1258 (1332)
Q Consensus 1248 ~~V~~~~~--~~g 1258 (1332)
+.|..++. .+|
T Consensus 314 ~~v~vf~~d~~tG 326 (345)
T PF10282_consen 314 NTVSVFDIDPDTG 326 (345)
T ss_dssp TEEEEEEEETTTT
T ss_pred CeEEEEEEeCCCC
Confidence 99986655 455
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-09 Score=122.82 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=189.9
Q ss_pred EEEEeCCC---CeEEEEeCCCC---ceEEEEecCCCCCeEEEEeCCCCeEEEEecc--cCcCCCCceEEEecCCC-CcEE
Q psy5806 796 IYWTDMNA---QTIMVSDIDGK---NAKVLFWLNLYRPRSIVVHYGLGLMVWADWS--RTRLTNNRIEMAHMDGT-NRAV 866 (1332)
Q Consensus 796 LYwtD~~~---~~I~v~~ldG~---~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g--~~~~~~~~I~r~~~dG~-~~~~ 866 (1332)
+|+..... +.|.+.++|.. ...+-......+|.-|+++|.+.+||.++.. .. +.|.....+.. ....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~----g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDS----GGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTT----TEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCC----CCEEEEEECCCcceeE
Confidence 44444433 66777777432 2222222345789999999999999999875 33 67877776654 3333
Q ss_pred Eecc----cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCC--CceeE--Ee-----------ccCCcceEEEEe--CC
Q psy5806 867 FETE----VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT--GRAKR--AY-----------AVQSHPYTLTVL--DY 925 (1332)
Q Consensus 867 l~~~----l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG--~~~~~--l~-----------~~~~~P~~la~~--~~ 925 (1332)
+.+. ...|..+++|.++ +.||++....+.+..++++. .-... +. +...||..+.+. +.
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred EeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3332 5678899999999 99999999999998888764 22222 11 135788888776 56
Q ss_pred EEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCc
Q psy5806 926 YVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005 (1332)
Q Consensus 926 ~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~ 1005 (1332)
++|.+|...++|+..+ .....+ .|
T Consensus 157 ~v~v~dlG~D~v~~~~--------------------~~~~~~-------------------------------~l----- 180 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYD--------------------IDDDTG-------------------------------KL----- 180 (345)
T ss_dssp EEEEEETTTTEEEEEE--------------------E-TTS--------------------------------TE-----
T ss_pred EEEEEecCCCEEEEEE--------------------EeCCCc-------------------------------eE-----
Confidence 8888898888876532 110000 00
Q ss_pred cccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-eeEe
Q psy5806 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-KPIP 1084 (1332)
Q Consensus 1006 tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~ 1084 (1332)
.. ...+ .++....|..+.|++.++++|+++...++|..++++..++. +.+.
T Consensus 181 ------------~~----~~~~------------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 181 ------------TP----VDSI------------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp ------------EE----EEEE------------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ------------EE----eecc------------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 00 0011 11233458899999999999999999999988887722222 1111
Q ss_pred -ec-------CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC---ceEEE--EecCCCCceEEEEcCCCcEEEEEecC
Q psy5806 1085 -LM-------NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG---QHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1085 -~~-------~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG---~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
.. +...|.+|++++.++.||+++...+.|.++++|. ....+ +..+-..|++++++|...+||+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 11 1126889999999999999999999999999953 33333 44455679999999999999999977
Q ss_pred CCCCCCCCcEEEEecC--CCceEEEEe-cCCCCcceEE
Q psy5806 1152 LYDNSPTTKIEKVYLD--GSYRTVLVE-EDLAFPNELA 1186 (1332)
Q Consensus 1152 ~~~~~~~~~I~r~~ld--G~~~~~l~~-~~l~~p~gla 1186 (1332)
. ..|....+| ....+.+.. ..+..|..|.
T Consensus 313 s------~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 313 S------NTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp T------TEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred C------CeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 456655554 333333332 3456666554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-09 Score=124.06 Aligned_cols=297 Identities=11% Similarity=0.067 Sum_probs=188.4
Q ss_pred CeEEEEeCCCCeEEEEeCC--CCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-
Q psy5806 794 RKIYWTDMNAQTIMVSDID--GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE- 870 (1332)
Q Consensus 794 ~nLYwtD~~~~~I~v~~ld--G~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~- 870 (1332)
..+|+++...+.|.+.+++ |+...+-.......|..|+++|...+||++.+.. ..|.....++.....+...
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAES 76 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeee
Confidence 4589999888999999985 4332221122236799999999988899987643 3676666664433333222
Q ss_pred --cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC--CCceeEE--eccCCcceEEEEe--CCEEEEEeCCCCEEEEEEC
Q psy5806 871 --VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA--TGRAKRA--YAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 871 --l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d--G~~~~~l--~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~ 942 (1332)
...|.+++++..+ +.||.+....+.|..++++ |...+.+ .....+|.++++. +.++|.++...++|...+.
T Consensus 77 ~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 77 PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 4578999999999 9999999888888887775 3222222 1234567777766 4578888877777654221
Q ss_pred CCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecc
Q psy5806 943 YDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFG 1022 (1332)
Q Consensus 943 ~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~ 1022 (1332)
. . .+ ..... ....
T Consensus 156 ~--------------------~-~g--------------------------------------~l~~~--------~~~~ 168 (330)
T PRK11028 156 S--------------------D-DG--------------------------------------HLVAQ--------EPAE 168 (330)
T ss_pred C--------------------C-CC--------------------------------------ccccc--------CCCc
Confidence 0 0 00 00000 0000
Q ss_pred eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-eeEeec--------CCCCcee
Q psy5806 1023 VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-KPIPLM--------NDTIRDN 1093 (1332)
Q Consensus 1023 ~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~~--------~~~~p~g 1093 (1332)
+ .++....|..++|++.+++||+++...++|..++++.+++. +.+... +...|.+
T Consensus 169 -~---------------~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 169 -V---------------TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred -e---------------ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 0 00111236678899999999999988899988887632222 221111 1123457
Q ss_pred eEEEecCCeEEEEcCCCceEEEEeeC--CceEEE---EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1094 FVIDWVANNIYYIDSQMHTINVARSD--GQHKKI---LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~~~I~v~~ld--G~~~~~---~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
|++++.++.||+++...+.|.+++++ +...+. +..+ ..|++++++|...+||.++.+. +.|....++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~------~~v~v~~~~~ 305 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKS------HHISVYEIDG 305 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccC------CcEEEEEEcC
Confidence 99999999999999888899999885 332222 2233 5899999999988999998755 4555555543
Q ss_pred C--ceEEE--EecCCCCcceEEE
Q psy5806 1169 S--YRTVL--VEEDLAFPNELAI 1187 (1332)
Q Consensus 1169 ~--~~~~l--~~~~l~~p~glai 1187 (1332)
. ..+.+ +.. -..|++++|
T Consensus 306 ~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CCCcEEEcccccc-CCCceEEEE
Confidence 2 22222 222 357888877
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-09 Score=124.66 Aligned_cols=199 Identities=11% Similarity=0.083 Sum_probs=144.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCC-CCCceeEe-ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC--
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD-STRIKPIP-LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-- 1120 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~-g~~~~~i~-~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-- 1120 (1332)
.+|..+++++.++.||.++...+.|..++++. |...+.+. ..+...|.++++++.++.||+++...+.|.+++++.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 46889999999999999998889998888752 22222221 123457899999999999999999999999999974
Q ss_pred ceE----E-E-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC--CceEEEEe-----c---CCCCcce
Q psy5806 1121 QHK----K-I-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG--SYRTVLVE-----E---DLAFPNE 1184 (1332)
Q Consensus 1121 ~~~----~-~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG--~~~~~l~~-----~---~l~~p~g 1184 (1332)
... . . +..+ ..|++++++|...+||.++.+. +.|...+++. ...+.+.. . .-.+|.+
T Consensus 160 ~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 160 HLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELN------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred cccccCCCceecCCC-CCCceEEECCCCCEEEEEecCC------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 211 1 1 2223 5799999999889999998765 6777777752 12222211 1 1124557
Q ss_pred EEEecCCCEEEEEEcCCCeEEEEecC--CCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYCDFF--GRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~d~d--G~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
|++++++++||.++...+.|..++++ +...+.+.. ...|.++++ ++++.+||+++..++.|..++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~-----~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI-----DHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE-----CCCCCEEEEEEccCCcEEEEEE
Confidence 99999999999999888999998885 333333322 568999999 5678999999998887776654
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-06 Score=108.35 Aligned_cols=369 Identities=17% Similarity=0.173 Sum_probs=213.9
Q ss_pred cceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCC---CCCccEEEeccCCeEEEEeCCCCeEEEE-eCCCC
Q psy5806 467 KSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT---KKPAGVAIDWRTNKLYWTESEYNWIEVS-NLDGT 542 (1332)
Q Consensus 467 ~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~---~~p~glAvDw~~~~lYw~d~~~~~I~v~-~l~g~ 542 (1332)
-.++|+++-+ ++.||+-| -+.|.|+..+|.- .+|+.-+. .+-.=||+|++.+.||.+|....+|.+. ++.++
T Consensus 365 ~aPvala~a~-DGSl~VGD--fNyIRRI~~dg~v-~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~ 440 (1899)
T KOG4659|consen 365 FAPVALAYAP-DGSLIVGD--FNYIRRISQDGQV-STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ 440 (1899)
T ss_pred eceeeEEEcC-CCcEEEcc--chheeeecCCCce-EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcc
Confidence 3467888866 89999987 4789999999864 34444343 3445699999999999999998887755 45543
Q ss_pred ----CcEEEEeC--------------------CCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEE-------
Q psy5806 543 ----YPTLLFWQ--------------------NLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL------- 591 (1332)
Q Consensus 543 ----~~~~l~~~--------------------~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l------- 591 (1332)
.-+++... .|..|++||+|.. |.||++| ..+|.+..-+|--+..+
T Consensus 441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~-g~lYfaD---~t~IR~iD~~giIstlig~~~~~~ 516 (1899)
T KOG4659|consen 441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKM-GNLYFAD---GTRIRVIDTTGIISTLIGTTPDQH 516 (1899)
T ss_pred ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccC-CcEEEec---ccEEEEeccCceEEEeccCCCCcc
Confidence 12333321 2778999999986 9999999 45677777666433322
Q ss_pred -----------EeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCC
Q psy5806 592 -----------ASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRS 660 (1332)
Q Consensus 592 -----------~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q 660 (1332)
..-.+.||..||||+-.+.||+.|. +.|.+++.++.-+ ++.. .
T Consensus 517 ~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~-Ii~G-----------------------r 570 (1899)
T KOG4659|consen 517 PPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVR-IILG-----------------------R 570 (1899)
T ss_pred CccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEE-EEcC-----------------------C
Confidence 2234789999999999999999986 5788887776533 2211 0
Q ss_pred cCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccc
Q psy5806 661 KKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKM 740 (1332)
Q Consensus 661 ~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~ 740 (1332)
+--|...| . + .++. ++..+ ..+..
T Consensus 571 --P~hC~~a~-----------~-t-----------------------~~~s--------kla~H-----------~tl~~ 594 (1899)
T KOG4659|consen 571 --PTHCDLAN-----------A-T-----------------------SSAS--------KLADH-----------RTLLI 594 (1899)
T ss_pred --ccccccCC-----------C-c-----------------------hhhh--------hhhhh-----------hhhhh
Confidence 11122110 0 0 0000 00000 01112
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~ 820 (1332)
+.+|++... |.||++.+...+|.|+..-+++-+.-+-.|...|-.--+|.. +|. +++++-..+
T Consensus 595 ~r~Iavg~~-G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~------cdc-------fs~~~~~At--- 657 (1899)
T KOG4659|consen 595 QRDIAVGTD-GALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAAC------CDC-------FSLRDVAAT--- 657 (1899)
T ss_pred hhceeecCC-ceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccC------Ccc-------ccccchhhh---
Confidence 245555543 899999998888777654444433334444433333222211 111 122221111
Q ss_pred ecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc----c--ccCcee---EEeCCCCCeEEE--
Q psy5806 821 WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE----V--IWPSCL---AIDYSDNPKLYW-- 889 (1332)
Q Consensus 821 ~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~----l--~~P~gl---~iD~~~~~~lYw-- 889 (1332)
...++.|.++||.|. |.+|.+|.|+.+++.-.-..+.++|++.-.+.+. + ..-.|. ++...+-+.+|-
T Consensus 658 ~A~lnsp~alaVsPd-g~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFt 736 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPD-GDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSSTVSLITGETFYNFT 736 (1899)
T ss_pred ccccCCcceEEECCC-CcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeeeeEEEEeceeEEEEE
Confidence 234678999999998 9999999887632111112345667654443321 0 000111 111111023332
Q ss_pred --EeCCCCeE-EEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCC-CCEEEEEECC
Q psy5806 890 --VDTSKHTI-EYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQ-HSKIYRANKY 943 (1332)
Q Consensus 890 --~d~~~~~I-~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~-~~~i~~~~~~ 943 (1332)
+|...+.| +..+-+|...+++....+.|..+...++.++|+-.. ++.+.++.+.
T Consensus 737 Y~v~ss~~~lsei~~a~Gn~l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~vSt~ 794 (1899)
T KOG4659|consen 737 YQVDSSIGMLSEITDASGNVLRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQVSTR 794 (1899)
T ss_pred EecCCCcchhhhhhhcCCcEEEEEecCCCCcceeecCCCcEEEEEEecCCceeEeccC
Confidence 33344444 233456777777766777787788888888887543 4566665544
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=91.12 Aligned_cols=42 Identities=38% Similarity=1.055 Sum_probs=40.0
Q ss_pred CeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeeec
Q psy5806 260 AFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301 (1332)
Q Consensus 260 g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~ 301 (1332)
|+|||||++..++|++++|||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 689999999889999999999999999999999999999994
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-08 Score=121.18 Aligned_cols=201 Identities=13% Similarity=0.183 Sum_probs=155.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+.++++++....+|+++...+.|..++.. ....+.....+...|.|++++..+.++|+++...+.|.+++.+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 578999999999999999887777766633 2222222223336899999999999999999999999999966443333
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
+..+ ..|.+++++|..+++|+++.+. ....|..++-........+..+ ..|.++++|++++++|+++..+++|
T Consensus 111 ~~~vG-~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 111 SIPVG-LGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred Eeeec-cCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCeE
Confidence 3334 3899999999999999999852 1367888877665544444333 3689999999999999999999999
Q ss_pred EEEecCCCceEE-----EEe-ecccceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1205 EYCDFFGRSRKI-----VIS-KVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~~~~-----~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
..+|..+..... .+. +..|.++++ ++.+.++|+++..+ +.|.+++..++
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v-----~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGPAGIAV-----DPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EEEeCCCcceeccccccccccCCCCceEEE-----CCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 999987765442 233 889999999 67788899999988 79999998776
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-09 Score=128.55 Aligned_cols=225 Identities=18% Similarity=0.201 Sum_probs=159.3
Q ss_pred CcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC----CceeEeec
Q psy5806 1011 TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST----RIKPIPLM 1086 (1332)
Q Consensus 1011 p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~----~~~~i~~~ 1086 (1332)
|.-.|++-..+- ||+|+-+....+.+.+.........=||.+|.++.||++|.....|+|+.-.++. +-+++...
T Consensus 374 ~DGSl~VGDfNy-IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 374 PDGSLIVGDFNY-IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred CCCcEEEccchh-eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 455666667787 9999988765544444334444567889999999999999999999988533222 22444433
Q ss_pred C--------------------CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec------------------
Q psy5806 1087 N--------------------DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN------------------ 1128 (1332)
Q Consensus 1087 ~--------------------~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~------------------ 1128 (1332)
+ +..|.||||| ..++||++|.. .|+++|.+|-..+++.+
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence 2 4479999999 68999999965 68899988865554311
Q ss_pred -CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-------------------cCCCCcceEEEe
Q psy5806 1129 -DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-------------------EDLAFPNELAID 1188 (1332)
Q Consensus 1129 -~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-------------------~~l~~p~glaiD 1188 (1332)
.+..|..|||+|..+.||+-|.+ .|.|++.++.-+.++-. ..+..|..||+.
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld~n--------vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg 601 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLDTN--------VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG 601 (1899)
T ss_pred eeeecccceeecCCCCeEEEeecc--------eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec
Confidence 35689999999999999999854 59999888866532210 012346788988
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCCceEEE--------------------------Ee---ecccceEEEecCCccccccE
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGRSRKIV--------------------------IS---KVAPYGLSVRQSPGKAFIVE 1239 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~~~~~~--------------------------~~---~~~P~glav~~~~~~~~~~~ 1239 (1332)
+ .+.||++++...+|.++..-++++++- +. +..|.+||| ..++.
T Consensus 602 ~-~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaV------sPdg~ 674 (1899)
T KOG4659|consen 602 T-DGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAV------SPDGD 674 (1899)
T ss_pred C-CceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEE------CCCCc
Confidence 5 579999999876665554433322211 11 678999999 56788
Q ss_pred EEEEECCCCEEEEEE
Q psy5806 1240 LYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1240 lYwtd~~~~~V~~~~ 1254 (1332)
+|++|.++-+|..+.
T Consensus 675 v~IAD~gN~rIr~Vs 689 (1899)
T KOG4659|consen 675 VIIADSGNSRIRKVS 689 (1899)
T ss_pred EEEecCCchhhhhhh
Confidence 999999887776443
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-11 Score=87.31 Aligned_cols=36 Identities=50% Similarity=1.319 Sum_probs=32.6
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCccc
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
|+.+||||+|+|+++|++|+|+||.||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 778899999999999999999999999999999998
|
... |
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-10 Score=85.66 Aligned_cols=36 Identities=61% Similarity=1.473 Sum_probs=34.4
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
.|.+++|+|.++.||+..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 688999999999999999999999999999999887
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-08 Score=115.35 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=153.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC-CceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT-IRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~-~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
..|.++++++.++++|..+...+.|+.++++. .. .+.....+ .|.+||+|+.++++|+++.. +++|.+++.+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~-~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NT-VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc--cc-eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 44678899999999999999999999999542 22 22212222 89999999999999999994 688988888754
Q ss_pred eEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE-----EEecCCCCcceEEEecCCCEEE
Q psy5806 1122 HKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV-----LVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1122 ~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~-----l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
.... +..+ ..|.+++++|...++|.++... +.|..++..+..... .+. ....|.+++++++++++|
T Consensus 151 ~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~------~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 151 KVTATIPVG-NTPTGVAVDPDGNKVYVTNSDD------NTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred eEEEEEecC-CCcceEEECCCCCeEEEEecCC------CeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEE
Confidence 4333 4334 4789999999988999999554 778888876655432 122 346799999999999999
Q ss_pred EEEcCC--CeEEEEecCCCceEEE-Ee---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1196 WADSTN--KRIEYCDFFGRSRKIV-IS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1196 ~~d~~~--~~I~~~d~dG~~~~~~-~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+++..+ +++.++|......... .. + .|.++++ .+.+.++|+++...+.|..++..+.
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~-----~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAV-----DPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeE-----CCCCCEEEEEecCCCeEEEEeCCCC
Confidence 999988 6899988876554433 22 5 8999999 7789999999999999999998775
|
|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-10 Score=85.89 Aligned_cols=36 Identities=42% Similarity=0.937 Sum_probs=33.9
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.+.+|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~-~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCG-NGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEET-TSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcC-CCCEEChHHcCCCCCCCCCCcccccC
Confidence 6899999999 78899999999999999999999876
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-06 Score=97.02 Aligned_cols=296 Identities=11% Similarity=0.080 Sum_probs=166.0
Q ss_pred eEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEE
Q psy5806 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831 (1332)
Q Consensus 752 ~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Ia 831 (1332)
.+|.+...++.|...+++.......+. ....|.+++++..++.||.+....+.|.+.++++......+. ....|..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCCCccEEE
Confidence 567777777788877765433333333 234578999999888899998888899999986433222222 224588899
Q ss_pred EeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe
Q psy5806 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY 911 (1332)
Q Consensus 832 vdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~ 911 (1332)
++|...++|.+... . .+|...++...........-..|.++++++.+ ..++.+......+...+..........
T Consensus 80 ~~~~g~~l~~~~~~-~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 80 LHPNGKILYIANED-D----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ECCCCCEEEEEcCC-C----CeEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99987778877533 2 36777766543211111112347788888877 666555433233333333322111100
Q ss_pred ccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCC
Q psy5806 912 AVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTN 989 (1332)
Q Consensus 912 ~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~ 989 (1332)
.....|.++++. +.+||.+-...+.|...+..
T Consensus 154 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~---------------------------------------------- 187 (300)
T TIGR03866 154 LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA---------------------------------------------- 187 (300)
T ss_pred EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC----------------------------------------------
Confidence 011122222221 11222221111221111100
Q ss_pred ccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeE
Q psy5806 990 FTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNL 1069 (1332)
Q Consensus 990 ~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I 1069 (1332)
....++.+....... + +....+.++.|++.++.+|++....++|
T Consensus 188 ------------------------------~~~~~~~~~~~~~~~-----~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 188 ------------------------------TRKVIKKITFEIPGV-----H-PEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred ------------------------------cceeeeeeeeccccc-----c-cccCCccceEECCCCCEEEEEcCCCCeE
Confidence 000011111110000 0 0112356788899888889887667788
Q ss_pred EEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEecCCCCceEEEEcC
Q psy5806 1070 RTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILVNDLMEPLAIAVYP 1140 (1332)
Q Consensus 1070 ~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp 1140 (1332)
..+++.++.....+ .....|.+|++++.++.||.+....+.|.++++++... ..+..+ ..|.+||+.|
T Consensus 232 ~v~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88887643322222 12346889999998999999887788999999985543 445444 7899999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-10 Score=83.91 Aligned_cols=35 Identities=46% Similarity=1.025 Sum_probs=32.9
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
|.+.+|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 1 C~~~~f~C~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcC-CCCeeCHHHcCCCccCCCCCcccccC
Confidence 678999998 69999999999999999999999876
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-10 Score=84.26 Aligned_cols=36 Identities=58% Similarity=1.278 Sum_probs=32.2
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC 702 (1332)
|+.+||||+|+|++.|+ +++|+||.||+|++|++||
T Consensus 1 C~~~NGgC~h~C~~~~g-~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPG-SYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETT-SEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCC-ceEeECCCCCEECcCCCCC
Confidence 67889999999999988 8999999999999999998
|
... |
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.3e-10 Score=83.75 Aligned_cols=35 Identities=54% Similarity=1.363 Sum_probs=33.0
Q ss_pred CCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 59 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
|.+.+|+|.++.||+..++|||..||+|||||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 56789999999999999999999999999999876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-06 Score=96.38 Aligned_cols=240 Identities=12% Similarity=0.116 Sum_probs=159.5
Q ss_pred EEEEeCCCCC-CCCcccccCCccceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeec---CCCCceeeEEE
Q psy5806 1024 IRRISLDTAD-LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLM---NDTIRDNFVID 1097 (1332)
Q Consensus 1024 i~~i~l~~~~-~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~---~~~~p~glAvD 1097 (1332)
|..+.++... ......-+..+.||.-|++++++++||..... .+.|-.+.++.-++.-+++.. ....|..+++|
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd 97 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD 97 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC
Confidence 7778877432 22223335667899999999999999999866 677766666532233333321 22356899999
Q ss_pred ecCCeEEEEcCCCceEEEEeeC--CceEEE---E----------------------------------------------
Q psy5806 1098 WVANNIYYIDSQMHTINVARSD--GQHKKI---L---------------------------------------------- 1126 (1332)
Q Consensus 1098 w~~~~LY~td~~~~~I~v~~ld--G~~~~~---~---------------------------------------------- 1126 (1332)
..++.||.+++..+.|.|..++ |....+ +
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 9999999999999988887763 431111 0
Q ss_pred ---------ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC--ceEEE-----EecC---CCCcceEEE
Q psy5806 1127 ---------VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS--YRTVL-----VEED---LAFPNELAI 1187 (1332)
Q Consensus 1127 ---------~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~--~~~~l-----~~~~---l~~p~glai 1187 (1332)
...-..||.|+++|...+.|....-. +.|.....++. ....| +.++ -.+-..|.|
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 00113688888888777788887554 56666666663 11111 1111 234457899
Q ss_pred ecCCCEEEEEEcCCCeEEEEecC--CCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEE--EEEEecCCC
Q psy5806 1188 DFKQRRLFWADSTNKRIEYCDFF--GRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSV--VIAREKSDT 1259 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~~~I~~~d~d--G~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V--~~~~~~~g~ 1259 (1332)
+++++.||.++.+.+.|..+..+ |...+.+.. +..|....+ +..+++|+.++..++.| +++++.+|
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i-----~~~g~~Liaa~q~sd~i~vf~~d~~TG- 325 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI-----NPSGRFLIAANQKSDNITVFERDKETG- 325 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-----CCCCCEEEEEccCCCcEEEEEEcCCCc-
Confidence 99999999999999998876664 544443332 666998888 66789999999877655 77888887
Q ss_pred CcceEEEEecC--CCCeeeEE
Q psy5806 1260 GQWDVHLIRSN--QEDFLNIK 1278 (1332)
Q Consensus 1260 ~~~~~~~~~~~--~~~~~~i~ 1278 (1332)
..+.+... ++.|+-|+
T Consensus 326 ---~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 326 ---RLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred ---eEEecccccCCCCcEEEE
Confidence 45555443 34455554
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-07 Score=101.77 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred cccCCcc-ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe
Q psy5806 1039 LPFPEYM-SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR 1117 (1332)
Q Consensus 1039 ~pi~~~~-~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ 1117 (1332)
.|++++. ++.||+|++.+++||.+.-..+.|+.++++ |.-...+-..+.+.++||++- .++.+.+++...+++.++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEE
Confidence 4566654 589999999999999998888999999976 766666666778899999996 3344444676678888888
Q ss_pred eC--Cce---EE--EEe-----cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec--CCCceEEEEe-------
Q psy5806 1118 SD--GQH---KK--ILV-----NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL--DGSYRTVLVE------- 1176 (1332)
Q Consensus 1118 ld--G~~---~~--~~~-----~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l--dG~~~~~l~~------- 1176 (1332)
++ +.. .. .+. .+....-|||.||.++.||.+-... ...|+.++. .+....+...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-----P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-----PKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-----SEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-----ChhhEEEccccCccceeecccccccccc
Confidence 73 221 11 111 1222368999999999999996544 346888876 3333332221
Q ss_pred cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE-e---------ecccceEEEecCCccccccEEEEEECC
Q psy5806 1177 EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI-S---------KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~-~---------~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
..+..|.+|++|+..+.||+-...+.+|..+|.+|..+..+. . ...|.|||+ +.+|.||+...
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~------d~~G~LYIvsE- 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAF------DPDGNLYIVSE- 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-------TT--EEEEET-
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEE------CCCCCEEEEcC-
Confidence 124569999999999999999999999999999998544332 1 357999999 56889999985
Q ss_pred CCEEEEE
Q psy5806 1247 AMSVVIA 1253 (1332)
Q Consensus 1247 ~~~V~~~ 1253 (1332)
-+..+++
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5566654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=98.82 Aligned_cols=210 Identities=14% Similarity=0.218 Sum_probs=131.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc--eeeEEEecC-CeEEEEcCCCceEEEEeeCCceEE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR--DNFVIDWVA-NNIYYIDSQMHTINVARSDGQHKK 1124 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p--~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~~~ 1124 (1332)
.+..|+...+.|||+|+..+.|.|.+... ... ....+..| .|.++=-.+ -..|..--+ .+.-+.++||....
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~q-n~v---~ra~ie~p~~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~ 92 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQ-NKV---YRAKIEGPPSAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSES 92 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhh-hhe---EEEEEecCcceeEEEEecCCCceEEEeec-ceEEEEEcccccce
Confidence 46678889999999999998888766542 111 11111111 222222111 122322222 23445666655322
Q ss_pred E--Eec--------CCCCceEEEEcCCCcEEEEEecCCCC--CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCC
Q psy5806 1125 I--LVN--------DLMEPLAIAVYPRRGLLFYSHWGLYD--NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1125 ~--~~~--------~~~~P~~iavdp~~g~Lywtd~~~~~--~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~ 1192 (1332)
+ ..+ ..++-..=-||| +|+.|.--...+. =.+.+-.-++.+.|.....+.. .+.-||||+.|.+.+
T Consensus 93 a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~-~v~IsNgl~Wd~d~K 170 (310)
T KOG4499|consen 93 AKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN-CVGISNGLAWDSDAK 170 (310)
T ss_pred eeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCceeeeh-hccCCccccccccCc
Confidence 2 111 123445667899 5665654322211 0112223444555656655554 688999999999999
Q ss_pred EEEEEEcCCCeEEEEecC---C--CceEEEEe--------ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1193 RLFWADSTNKRIEYCDFF---G--RSRKIVIS--------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d~d---G--~~~~~~~~--------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
+.|++|+.+..|...|+| | ++|+++.. ..-|.||++ |.+|+||+|-|+.++|+++|+.+|
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I------D~eG~L~Va~~ng~~V~~~dp~tG- 243 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI------DTEGNLYVATFNGGTVQKVDPTTG- 243 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE------ccCCcEEEEEecCcEEEEECCCCC-
Confidence 999999999999888876 3 26888775 456899999 679999999999999999999999
Q ss_pred CcceEEEEecCCCC
Q psy5806 1260 GQWDVHLIRSNQED 1273 (1332)
Q Consensus 1260 ~~~~~~~~~~~~~~ 1273 (1332)
+-...+.--+++
T Consensus 244 --K~L~eiklPt~q 255 (310)
T KOG4499|consen 244 --KILLEIKLPTPQ 255 (310)
T ss_pred --cEEEEEEcCCCc
Confidence 655544433433
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-09 Score=81.94 Aligned_cols=42 Identities=43% Similarity=0.888 Sum_probs=39.6
Q ss_pred CeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEec
Q psy5806 565 GIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDL 606 (1332)
Q Consensus 565 G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~ 606 (1332)
|+|||||++..++|++++|||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 689999999767999999999999999999999999999985
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-06 Score=97.76 Aligned_cols=215 Identities=9% Similarity=0.007 Sum_probs=147.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..+++++.++.+|.+....+.|..+++.++.....+ .....|.++++++.++.|+++......+..++........
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 35678899999999998877789999997643221111 1123589999998788887776655556666766433222
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-------cCCCCcceEEEecCCCEEEEE
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-------EDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-------~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
+..+ ..|..++++|...+||++.... +.|...++........+. ..-..|.+++++++++.+|++
T Consensus 152 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 152 NVLVD-QRPRFAEFTADGKELWVSSEIG------GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEcC-CCccEEEECCCCCEEEEEcCCC------CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 3222 4789999999777787764333 567777776543222111 012357789999999999999
Q ss_pred EcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeee
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLN 1276 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~ 1276 (1332)
....++|...|.........+. ...|.+|++ .+.+.+||.+....+.|..++..++ ..+..+..+ ..|.+
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF-----TPDEKYLLTTNGVSNDVSVIDVAAL---KVIKSIKVG-RLPWG 295 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEE-----CCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEEcc-cccce
Confidence 8888899998886443332233 567889988 5567789998888999999999988 666666544 66777
Q ss_pred EE
Q psy5806 1277 IK 1278 (1332)
Q Consensus 1277 i~ 1278 (1332)
|+
T Consensus 296 ~~ 297 (300)
T TIGR03866 296 VV 297 (300)
T ss_pred eE
Confidence 75
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-06 Score=101.70 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=146.3
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeec------CC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLM------ND 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~------~~ 1088 (1332)
|.-|+.+ ...++..|+....|.++ +++.++.||+++. ..+.|..+++.++.....+..- ..
T Consensus 29 v~ViD~~---~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 29 VYTIDGE---AGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred EEEEECC---CCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 4444443 34444445555667776 9999999999999 8899999997755444334321 12
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEEEeeCCc-eEEEEe---------------------------------------
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQ-HKKILV--------------------------------------- 1127 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~-~~~~~~--------------------------------------- 1127 (1332)
..|..+++...++.||+++.. .+.+.++|+... ....+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 245599999999999999977 777888877532 111010
Q ss_pred ----cC-----CCCceEEEEcC-CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE-----ecCC----CCcce---E
Q psy5806 1128 ----ND-----LMEPLAIAVYP-RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV-----EEDL----AFPNE---L 1185 (1332)
Q Consensus 1128 ----~~-----~~~P~~iavdp-~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~-----~~~l----~~p~g---l 1185 (1332)
.. +.+| ++.+ .+.+||.+.. +.|+.+++.+....... .... -.|.| +
T Consensus 185 ~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 185 TEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred eeeecCCccccccCC---ceEcCCCcEEEEecC--------CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 00 0223 2233 2334444443 35999988776533321 1110 14566 9
Q ss_pred EEecCCCEEEEE-EcC--------CCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEE
Q psy5806 1186 AIDFKQRRLFWA-DST--------NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1186 aiD~~~~~LY~~-d~~--------~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~ 1254 (1332)
++.+++++||++ ..+ .+.|+.+|.....+...+. +..|.+|++ ++++. .||.+++.++.|..+|
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iav-----S~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINV-----SQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEE-----CCCCCeEEEEeCCCCCcEEEEE
Confidence 999999999995 322 3689999986655555555 889999999 56677 9999999999999999
Q ss_pred ecCCCCcceEEEE
Q psy5806 1255 EKSDTGQWDVHLI 1267 (1332)
Q Consensus 1255 ~~~g~~~~~~~~~ 1267 (1332)
..++ +.+..+
T Consensus 329 ~~t~---k~i~~i 338 (352)
T TIGR02658 329 AETG---KELSSV 338 (352)
T ss_pred CcCC---eEEeee
Confidence 8888 555444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-07 Score=103.20 Aligned_cols=198 Identities=18% Similarity=0.174 Sum_probs=139.5
Q ss_pred EEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEe-
Q psy5806 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFW- 821 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~- 821 (1332)
+-.|++..+.|||+|...+.|.|.++.....+++.. .-..+.++.+| ..++|..++.+...+.. -.|..++.+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeec-CCCeEEEEccccEEEec--cCCceeEEeccc
Confidence 445888999999999999999999987444444433 33447888888 56668888776655555 23444233321
Q ss_pred ---cCCCCCeEEEEeCCCCeEEEEecc-----cCc-CCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeC
Q psy5806 822 ---LNLYRPRSIVVHYGLGLMVWADWS-----RTR-LTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 822 ---~~~~~P~~Iavdp~~g~lywtd~g-----~~~-~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
..+.+|..+.++|. |.+|+++.+ ... ...++++|...+|...+.+...+..||||++++++ +.||++|.
T Consensus 105 ~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC-CEEEEEeC
Confidence 12367999999998 999999877 210 12357888887776655555559999999999999 99999999
Q ss_pred CCCeEEEEccC---CC--cee-EEec--cCCcceEEEEeCCEEEE--EeCCCCEEEEEECCCCeE
Q psy5806 893 SKHTIEYKTLA---TG--RAK-RAYA--VQSHPYTLTVLDYYVYW--TDVQHSKIYRANKYDVKD 947 (1332)
Q Consensus 893 ~~~~I~~~~~d---G~--~~~-~l~~--~~~~P~~la~~~~~iyw--tD~~~~~i~~~~~~~g~~ 947 (1332)
...+|++++++ |. ++. .+.. .-..|-|++++.+-.|| +-|....|.+.++. |+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 99999999987 32 222 1211 33678999999554445 44555588888877 633
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-06 Score=90.44 Aligned_cols=280 Identities=13% Similarity=0.138 Sum_probs=175.5
Q ss_pred CeEEEEeCC---CCeEEEEeCCCCceEE---EEecCCCCCeEEEEeCCCCeEEEEecc-cCcCCCCceEEEecCCC-CcE
Q psy5806 794 RKIYWTDMN---AQTIMVSDIDGKNAKV---LFWLNLYRPRSIVVHYGLGLMVWADWS-RTRLTNNRIEMAHMDGT-NRA 865 (1332)
Q Consensus 794 ~nLYwtD~~---~~~I~v~~ldG~~~~~---l~~~~~~~P~~Iavdp~~g~lywtd~g-~~~~~~~~I~r~~~dG~-~~~ 865 (1332)
.++|+.... .+.|.+.++|++..+. .....+.+|.-|+++|.+..||....- .. ..|.....|+. ++.
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~L 78 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGRL 78 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCeE
Confidence 357776555 6789999998543322 233467899999999999999998754 23 57888888865 666
Q ss_pred EEecc----cccCceeEEeCCCCCeEEEEeCCCCeEEEEcc--CCCceeE---Eec---------cC--CcceEEEEeCC
Q psy5806 866 VFETE----VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL--ATGRAKR---AYA---------VQ--SHPYTLTVLDY 925 (1332)
Q Consensus 866 ~l~~~----l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~--dG~~~~~---l~~---------~~--~~P~~la~~~~ 925 (1332)
.+.+. ...|.-+++|.++ +.||.+..+.++|...-+ +|.-... +.- .- .|+..++..+.
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred EEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 77654 4456899999999 999999999999887766 4543222 111 12 34455666788
Q ss_pred EEEEEeCCCCEEEEEECCCCeEE---EeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEcc
Q psy5806 926 YVYWTDVQHSKIYRANKYDVKDI---VEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002 (1332)
Q Consensus 926 ~iywtD~~~~~i~~~~~~~g~~i---~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~ 1002 (1332)
+|...|....+|+-.+...|..- ...++ .+ .| |.++.+..
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~------------~G---------~G----------------PRHi~FHp 200 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVK------------PG---------AG----------------PRHIVFHP 200 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccC------------CC---------CC----------------cceEEEcC
Confidence 99999999999987766655100 00000 00 01 11222222
Q ss_pred CCccccc---cCcceEEEEeec---c--eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEEC
Q psy5806 1003 DRRSCFS---RTREFLLYTSRF---G--VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM 1074 (1332)
Q Consensus 1003 d~~tC~~---~p~~~ll~~~~~---~--~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l 1074 (1332)
+++-+.- ......++...+ . .+..++.-+.+ +++-....+|-.++.++.||.+|...+.|..+.+
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2111100 001111111111 1 01222221111 3455567888899999999999988888766655
Q ss_pred CCCCCceeEe-e--cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1075 SDSTRIKPIP-L--MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1075 ~~g~~~~~i~-~--~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
+.-++...++ . +....|.++.++.-++.|+++....+.|.++..|.+.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 5333332222 1 2333599999999999999999999999999998654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-05 Score=92.21 Aligned_cols=290 Identities=12% Similarity=0.076 Sum_probs=163.1
Q ss_pred CCCeEEEEeCC----CCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEE
Q psy5806 792 IGRKIYWTDMN----AQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF 867 (1332)
Q Consensus 792 ~~~nLYwtD~~----~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l 867 (1332)
.++++|++|.. .++|.|.+.+.....-.+..+ ..|+++ +.|..++||+++..-. |+-| |.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~-----R~~~----G~----- 74 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYS-----RIAR----GK----- 74 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEecccc-----cccc----CC-----
Confidence 56789999987 488999998765444344444 679997 9999889999985432 2211 11
Q ss_pred ecccccCceeEEeCCCCCeEEEEeCCCCeE-EEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCC-CCEEEEEECCCC
Q psy5806 868 ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI-EYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQ-HSKIYRANKYDV 945 (1332)
Q Consensus 868 ~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I-~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~-~~~i~~~~~~~g 945 (1332)
.. ..|=+.|..+.++ ..+.+ |...+.......+-++|+-++.+||..++. ..+|-.+|..++
T Consensus 75 --------------~~-d~V~v~D~~t~~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 75 --------------RT-DYVEVIDPQTHLPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred --------------CC-CEEEEEECccCcEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 11 2333333333222 22222 122111111223345555567799999987 888888888777
Q ss_pred eEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEc----cCCccccccCcceEEEEeec
Q psy5806 946 KDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLS----ADRRSCFSRTREFLLYTSRF 1021 (1332)
Q Consensus 946 ~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~----~d~~tC~~~p~~~ll~~~~~ 1021 (1332)
+++.. +. . ++|.++=.....++.=.|++|-.+. .+++ .. ....
T Consensus 139 kvv~e---------i~----v----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---------~~-~~~~ 185 (352)
T TIGR02658 139 AFVRM---------MD----V----------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---------PK-IKPT 185 (352)
T ss_pred cEEEE---------Ee----C----------CCCcEEEEecCCccEEEeecCceEEEEecCCCc---------eE-Eeee
Confidence 55442 10 0 3455554443444555566664331 2221 00 1000
Q ss_pred ceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee--Ee---ecC----CCCce
Q psy5806 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP--IP---LMN----DTIRD 1092 (1332)
Q Consensus 1022 ~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~--i~---~~~----~~~p~ 1092 (1332)
. + +..+ .. +-..+| .|.+.+++.+|+... |+|+.+++. +..... .+ ... .-.|.
T Consensus 186 ~-v--f~~~----~~-----~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~-~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 186 E-V--FHPE----DE-----YLINHP---AYSNKSGRLVWPTYT-GKIFQIDLS-SGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred e-e--ecCC----cc-----ccccCC---ceEcCCCcEEEEecC-CeEEEEecC-CCcceecceeeeccccccccccCCC
Confidence 1 0 1100 00 111223 445544566666545 999999965 322211 11 111 12566
Q ss_pred e---eEEEecCCeEEEEc-CC--------CceEEEEeeCCceEEE-EecCCCCceEEEEcCCCc-EEEEEecCCCCCCCC
Q psy5806 1093 N---FVIDWVANNIYYID-SQ--------MHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRG-LLFYSHWGLYDNSPT 1158 (1332)
Q Consensus 1093 g---lAvDw~~~~LY~td-~~--------~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g-~Lywtd~~~~~~~~~ 1158 (1332)
| +|++..+++||++. .. .+.|.++|.....+.. +..+ ..|.+|+++|... +||.++...
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s------ 321 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGD------ 321 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCC------
Confidence 6 99999999999953 22 2578888887444333 5445 6899999999888 899998765
Q ss_pred CcEEEEecCCCc
Q psy5806 1159 TKIEKVYLDGSY 1170 (1332)
Q Consensus 1159 ~~I~r~~ldG~~ 1170 (1332)
+.|..++.....
T Consensus 322 ~~VsViD~~t~k 333 (352)
T TIGR02658 322 KTLYIFDAETGK 333 (352)
T ss_pred CcEEEEECcCCe
Confidence 558877765443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.7e-09 Score=105.04 Aligned_cols=78 Identities=31% Similarity=0.501 Sum_probs=64.2
Q ss_pred CCCCceecCCCCce-EeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC----CEEEeeeecCCCCC---CCC
Q psy5806 15 EIPQYKKCNRTGAC-IPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG----HCILKTWLCDGIPD---CSL 86 (1332)
Q Consensus 15 c~~~~f~C~~~~~C-i~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~D 86 (1332)
-.++.|+|.++..= ||.++++|+.-||+|||||.+ +..|+.+.|.|.|. .-||..++-||.-| |=|
T Consensus 33 ~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG------TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCD 106 (176)
T PF12999_consen 33 SENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG------TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCD 106 (176)
T ss_pred CCCCceEecCCCCceecHHHccCcceeCCCCCCccc------cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCC
Confidence 35678999855555 999999999999999999954 45788889999974 58999999999999 999
Q ss_pred CCCcc--cccccCC
Q psy5806 87 GEDER--NCNKTCD 98 (1332)
Q Consensus 87 gsDE~--~C~~~C~ 98 (1332)
||||. .|+++|.
T Consensus 107 GSDE~~~~C~N~C~ 120 (176)
T PF12999_consen 107 GSDESGGKCPNTCA 120 (176)
T ss_pred CCCCCCCCCccHHH
Confidence 99992 2554443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=102.75 Aligned_cols=232 Identities=17% Similarity=0.124 Sum_probs=143.4
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee------cCCCCceeeEEEe---cCCeEEEEcCCC----
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL------MNDTIRDNFVIDW---VANNIYYIDSQM---- 1110 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~------~~~~~p~glAvDw---~~~~LY~td~~~---- 1110 (1332)
+.+|.+|++.++ ++||+++. .|+|++++ .+|+....+.. .+...+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 357899999998 68999986 99999999 43554222221 2344678999997 358899976532
Q ss_pred ----ceEEEEeeCCc-----eEEEEe----c---CCCCceEEEEcCCCcEEEEEecCCCC-------CCCCCcEEEEecC
Q psy5806 1111 ----HTINVARSDGQ-----HKKILV----N---DLMEPLAIAVYPRRGLLFYSHWGLYD-------NSPTTKIEKVYLD 1167 (1332)
Q Consensus 1111 ----~~I~v~~ldG~-----~~~~~~----~---~~~~P~~iavdp~~g~Lywtd~~~~~-------~~~~~~I~r~~ld 1167 (1332)
.+|.++.++.. ..+++. . ....-..|+++| .|+||++--...+ ....++|.|++.|
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 46666666533 122221 1 223457799999 7899999522211 2346889999999
Q ss_pred CCc------------eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec--CCCc-----eE-------------
Q psy5806 1168 GSY------------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF--FGRS-----RK------------- 1215 (1332)
Q Consensus 1168 G~~------------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~--dG~~-----~~------------- 1215 (1332)
|+. ...++..++..|.+|++|+.+++||.+|.+.+..+.++. .|.+ ..
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 972 234566789999999999998999999987554443332 2331 00
Q ss_pred --------EEEe---ecccceEEEe-cCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCC-CeeeEEE
Q psy5806 1216 --------IVIS---KVAPYGLSVR-QSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQE-DFLNIKA 1279 (1332)
Q Consensus 1216 --------~~~~---~~~P~glav~-~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~ 1279 (1332)
.+.. ...|.|+++. ++.-..+.+.++++++..++|+++...++......+.+..... .+.+|.+
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 1111 4578899882 1111245889999999999999999976521222333444444 5667653
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=105.22 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCc-------eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec-
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRI-------KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN- 1128 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~-------~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~- 1128 (1332)
+.|+|+-...|.+-+++....+.. ..-...-.++|-|||++..+++||+||...+ +.+++..|...+.+..
T Consensus 76 ~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~ 154 (376)
T KOG1520|consen 76 RILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADE 154 (376)
T ss_pred ceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecccc
Confidence 456888767777777664211111 1111123579999999999999999998775 4456777665444322
Q ss_pred ----CCCCceEEEEcCCCcEEEEEecCCC-C----------CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1129 ----DLMEPLAIAVYPRRGLLFYSHWGLY-D----------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1129 ----~~~~P~~iavdp~~g~Lywtd~~~~-~----------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
.+....++.|++ +|.+||||.... + ..+.+|++|.+..-+..++|.. ++..|||+++.+++..
T Consensus 155 ~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 155 AEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-GLYFPNGLALSPDGSF 232 (376)
T ss_pred ccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-cccccccccCCCCCCE
Confidence 233467899999 999999996541 1 2356788888887777777776 7999999999999999
Q ss_pred EEEEEcCCCeEEEEecCCCce---EEEEe--ecccceEEEecCCccccccEEEEEE
Q psy5806 1194 LFWADSTNKRIEYCDFFGRSR---KIVIS--KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~~---~~~~~--~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
+.+++....+|.++-+.|... ++++. ...|+.|.. +..|.+|++-
T Consensus 233 vl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~------~~~G~fWVal 282 (376)
T KOG1520|consen 233 VLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRR------DSTGHFWVAL 282 (376)
T ss_pred EEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeE------CCCCCEEEEE
Confidence 999999999999999998765 77776 788999988 4566666666
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-07 Score=105.57 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=137.8
Q ss_pred CCccceEEEEEeCCCcEEEEEeC-----------CCC-eEEEEECCCCCCc---eeEeecCCCCceeeEEEecCCeEEEE
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADM-----------RSG-NLRTFDMSDSTRI---KPIPLMNDTIRDNFVIDWVANNIYYI 1106 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~-----------~~~-~I~~~~l~~g~~~---~~i~~~~~~~p~glAvDw~~~~LY~t 1106 (1332)
|.+.+|.+|++|+. ++||+++. ..+ +|.++.-.++.+. .+++..++..|.||++.. ++ ||++
T Consensus 11 p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~ 87 (367)
T TIGR02604 11 PLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA 87 (367)
T ss_pred CccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe
Confidence 34678999999987 56999984 223 8888875444433 345557888999999984 34 9999
Q ss_pred cCCCceEEEE-eeCCc-----eEEEEecCC--------CCceEEEEcCCCcEEEEEecCCCC-------------CCCCC
Q psy5806 1107 DSQMHTINVA-RSDGQ-----HKKILVNDL--------MEPLAIAVYPRRGLLFYSHWGLYD-------------NSPTT 1159 (1332)
Q Consensus 1107 d~~~~~I~v~-~ldG~-----~~~~~~~~~--------~~P~~iavdp~~g~Lywtd~~~~~-------------~~~~~ 1159 (1332)
+.. .|..+ +.+|. .++++.+++ ..|.+|+++| .|+||++...... ....+
T Consensus 88 ~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 88 TPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred CCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence 743 45544 44431 233333322 2378999999 7999998753100 01125
Q ss_pred cEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC--CC-------------------ceEE--
Q psy5806 1160 KIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF--GR-------------------SRKI-- 1216 (1332)
Q Consensus 1160 ~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d--G~-------------------~~~~-- 1216 (1332)
.|+|++.+|+..+++ ..++..|+||++|+ .+.||++|.......++..- |. ....
T Consensus 165 ~i~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
T TIGR02604 165 GLFRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPT 242 (367)
T ss_pred eEEEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccc
Confidence 799999999887654 56789999999997 57889998865555544321 10 0000
Q ss_pred -------------EEe---ecccceEEEecCC--ccccccEEEEEECCCCEEEEEEec
Q psy5806 1217 -------------VIS---KVAPYGLSVRQSP--GKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1217 -------------~~~---~~~P~glav~~~~--~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
... ...|.|+++...+ .+.+++.|++++|..+.|.++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~ 300 (367)
T TIGR02604 243 GEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLE 300 (367)
T ss_pred cccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEee
Confidence 001 2368899983221 124678999999999999999875
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-08 Score=74.26 Aligned_cols=33 Identities=42% Similarity=0.911 Sum_probs=30.8
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE 47 (1332)
.|.+.+|+|. ++.|||..|+|||..||.|||||
T Consensus 1 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 1 TCPPGEFQCD-NGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCCeEECC-CCCEECchhhCCCcCcCcCCCCC
Confidence 4777899998 88999999999999999999998
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. |
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-08 Score=73.38 Aligned_cols=32 Identities=53% Similarity=1.322 Sum_probs=30.2
Q ss_pred CCCCCEEecCCCEEEeeeecCCCCCCCCCCCc
Q psy5806 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90 (1332)
Q Consensus 59 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE 90 (1332)
|.+.+|+|.++.||+..++|||..||+|||||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 66679999999999999999999999999998
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=104.22 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=110.9
Q ss_pred CCCceeeEEEecCCeEEEEcCC------------CceEEEEee---CCce--EEEEecCCCCceEEEEcCCCcEEEEEec
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQ------------MHTINVARS---DGQH--KKILVNDLMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~------------~~~I~v~~l---dG~~--~~~~~~~~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
+..|.+||+|. .++||+++.. .++|.+++- ||.. .+++..++..|.+|++.+ .| ||+++.
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP 89 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC
Confidence 78999999995 5779999742 237777654 4654 344777889999999998 66 999974
Q ss_pred CCCCCCCCCcEEEE-ecCCC-----ceEEEEec---C----CCCcceEEEecCCCEEEEEEcC-----------------
Q psy5806 1151 GLYDNSPTTKIEKV-YLDGS-----YRTVLVEE---D----LAFPNELAIDFKQRRLFWADST----------------- 1200 (1332)
Q Consensus 1151 ~~~~~~~~~~I~r~-~ldG~-----~~~~l~~~---~----l~~p~glaiD~~~~~LY~~d~~----------------- 1200 (1332)
+.|.|. +.+|. .+++|+.. . ...+++|+++++ ++||+++..
T Consensus 90 --------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 90 --------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred --------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEecccCCCceeccCCCccCccc
Confidence 358888 44442 34445431 1 234889999975 689998773
Q ss_pred --CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1201 --NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1201 --~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
.+.|.+++.+|+..+++.. ..+|.||++ +..+.||++|...+...+++.
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~------d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSV------DSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceE------CCCCCEEEEccCCCceeEEcc
Confidence 1579999999998887777 899999999 457889999987766666653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.001 Score=79.09 Aligned_cols=331 Identities=14% Similarity=0.095 Sum_probs=178.2
Q ss_pred CeEEEEecccCcCCCCceEEEecCCCCcEEEe---cccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEecc
Q psy5806 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE---TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAV 913 (1332)
Q Consensus 837 g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~---~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~ 913 (1332)
..+|+++.+.+ ++. -+|+...+++. .....+.++++..++ +.+|++.. .+.|..+|+.-...-.-...
T Consensus 6 ~l~~V~~~~~~-----~v~--viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~r-dg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSG-----SVA--VIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANR-DGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGT-----EEE--EEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEET-TSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCC-----EEE--EEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcC-CCeEEEEECCcccEEEEEec
Confidence 35667776655 444 45555444332 222235667778878 88999975 58999999865443222245
Q ss_pred CCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCcc
Q psy5806 914 QSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFT 991 (1332)
Q Consensus 914 ~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~ 991 (1332)
...|.++++. +.++|.+.+..+.+..++..+.+.++
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~------------------------------------------ 114 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK------------------------------------------ 114 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE------------------------------------------
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee------------------------------------------
Confidence 6788888885 67999998888877655543332221
Q ss_pred ccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEE
Q psy5806 992 CACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRT 1071 (1332)
Q Consensus 992 C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~ 1071 (1332)
.|......... + -..+.+|-..+.+...+++-...+.|..
T Consensus 115 ----------------------------------~I~~~~~~~~~-----~-~~Rv~aIv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 115 ----------------------------------TIPTGGMPVDG-----P-ESRVAAIVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp ----------------------------------EEE--EE-TTT-----S----EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred ----------------------------------ecccccccccc-----c-CCCceeEEecCCCCEEEEEEccCCeEEE
Confidence 11110000000 0 0012333333333333344445677777
Q ss_pred EECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCc----eEEEEcCCCcEEE
Q psy5806 1072 FDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEP----LAIAVYPRRGLLF 1146 (1332)
Q Consensus 1072 ~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P----~~iavdp~~g~Ly 1146 (1332)
++..+.....+........|++..+|+.++.+|++....+.|.++++....... +..+ ..| .+--++|..|.+
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g-~~p~~~~~~~~php~~g~v- 232 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG-KKPHPGPGANFPHPGFGPV- 232 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S-SSBEETTEEEEEETTTEEE-
T ss_pred EEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc-ccccccccccccCCCcceE-
Confidence 775544333222222345799999999999999988888899999988554444 4332 232 333488977765
Q ss_pred EEecCCCCCCCCCcEEEEecCC------CceEEE--EecCCCCcceEEEecCCCEEEEE---EcCCCeEEEEecCCCceE
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDG------SYRTVL--VEEDLAFPNELAIDFKQRRLFWA---DSTNKRIEYCDFFGRSRK 1215 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG------~~~~~l--~~~~l~~p~glaiD~~~~~LY~~---d~~~~~I~~~d~dG~~~~ 1215 (1332)
|+..+. ....|-.+..+- ...+++ +.. ...|..+...++++.||+. ....+.|..+|..-- +
T Consensus 233 w~~~~~----~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~ 305 (369)
T PF02239_consen 233 WATSGL----GYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--K 305 (369)
T ss_dssp EEEEBS----SSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--E
T ss_pred Eeeccc----cceecccccCCccccchhhcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--c
Confidence 554332 012222222111 111111 222 2445667778888888876 456788999888644 3
Q ss_pred EEEe-----ecccceEEEecCCccccccEEEEEECCCC-EEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1216 IVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAM-SVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1216 ~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~-~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
++.. ...+..+.+ ..++.++|++.|..+ +|..+|..|. +....+. +..|.++
T Consensus 306 ~~~~i~~~~~~~~~h~ef-----~~dG~~v~vS~~~~~~~i~v~D~~Tl---~~~~~i~--~~tP~G~ 363 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHMEF-----NPDGKEVWVSVWDGNGAIVVYDAKTL---KEKKRIP--VPTPTGK 363 (369)
T ss_dssp EEE-HHHHHT--EEEEEE------TTSSEEEEEEE--TTEEEEEETTTT---EEEEEEE----SEEEE
T ss_pred eeEEEeccCCCcEeccEE-----CCCCCEEEEEEecCCCEEEEEECCCc---EEEEEEE--eeCCCeE
Confidence 3333 334777777 667899999999988 9999999888 6666665 5666665
|
... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-05 Score=81.46 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=186.8
Q ss_pred cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe-ccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY-AVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~-~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
...|-.++.+.++ .+++.++..+.|-..|......+++. ....+|++|.+. ++..+.+|... .|.|++..+.++-
T Consensus 61 G~ap~dvapapdG--~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 61 GSAPFDVAPAPDG--AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCccccccCCCC--ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 4557778888776 89999999999999998766666554 378899999998 55777788777 9999988776444
Q ss_pred EeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEe
Q psy5806 949 VEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRIS 1028 (1332)
Q Consensus 949 ~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~ 1028 (1332)
+..++.+.. =. +-.+-+-++.-.|-|+.+.. +.. .
T Consensus 138 ~f~lp~~~a--------------~~-----------------------------nlet~vfD~~G~lWFt~q~G-~yG-r 172 (353)
T COG4257 138 RFPLPLEHA--------------DA-----------------------------NLETAVFDPWGNLWFTGQIG-AYG-R 172 (353)
T ss_pred EeecccccC--------------CC-----------------------------cccceeeCCCccEEEeeccc-cce-e
Confidence 433331100 00 00011112344566665555 444 4
Q ss_pred CCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee-cCC-CCceeeEEEecCCeEEEE
Q psy5806 1029 LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL-MND-TIRDNFVIDWVANNIYYI 1106 (1332)
Q Consensus 1029 l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~-~~~-~~p~glAvDw~~~~LY~t 1106 (1332)
|++......+.|.+....|.||...++ +.||+++...+.|-+++...+ ..+++.. ..+ ..-..|-.|. -++++.+
T Consensus 173 LdPa~~~i~vfpaPqG~gpyGi~atpd-Gsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdp-ig~~wit 249 (353)
T COG4257 173 LDPARNVISVFPAPQGGGPYGICATPD-GSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDP-IGRAWIT 249 (353)
T ss_pred cCcccCceeeeccCCCCCCcceEECCC-CcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCc-cCcEEEe
Confidence 444433334566777778999999987 479999999999999986644 3333331 111 1234455664 3566677
Q ss_pred cCCCceEEEEeeCCce-EEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcce
Q psy5806 1107 DSQMHTINVARSDGQH-KKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNE 1184 (1332)
Q Consensus 1107 d~~~~~I~v~~ldG~~-~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~g 1184 (1332)
+....++..++..-.. ++- +-....+|+++-||- .|+++.+|++. +.|.|.+..-...+++-. .-..++-
T Consensus 250 twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~a------gai~rfdpeta~ftv~p~-pr~n~gn 321 (353)
T COG4257 250 TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADA------GAIGRFDPETARFTVLPI-PRPNSGN 321 (353)
T ss_pred ccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeecccc------CceeecCcccceEEEecC-CCCCCCc
Confidence 7777777777665332 322 444557899999997 89999999887 789999876655555543 3355667
Q ss_pred EEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
+.+|...++|+.++++.+.+.+.
T Consensus 322 ~ql~gr~ge~W~~e~gvd~lv~~ 344 (353)
T COG4257 322 IQLDGRPGELWFTEAGVDALVTT 344 (353)
T ss_pred eeccCCCCceeecccCcceeEEE
Confidence 89999999999999988877664
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00013 Score=86.47 Aligned_cols=336 Identities=11% Similarity=0.051 Sum_probs=172.0
Q ss_pred ceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEE
Q psy5806 751 EYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSI 830 (1332)
Q Consensus 751 ~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~I 830 (1332)
+.+|+++...+.|..++.........+..+...+.++++...++.+|+++. .+.|.+.++......--+..+ ..|++|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceE
Confidence 455677888888877765543333334444333566788888999999976 468999999544322223334 469999
Q ss_pred EEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEe---cc-cc------cCceeEEeCCCCCeEEEEeCCCCeEEEE
Q psy5806 831 VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE---TE-VI------WPSCLAIDYSDNPKLYWVDTSKHTIEYK 900 (1332)
Q Consensus 831 avdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~---~~-l~------~P~gl~iD~~~~~~lYw~d~~~~~I~~~ 900 (1332)
++.+...++|.+++... .+. -+|+...+.+. .. .. .+.++.-.+.. ...+++-...+.|..+
T Consensus 84 ~~s~DG~~~~v~n~~~~-----~v~--v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPG-----TVS--VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EE--TTTEEEEEEEETT-----EEE--EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecCCC-----cee--EeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEE
Confidence 99999889999987655 343 35554443332 11 11 12355444433 3333344567999999
Q ss_pred ccCCCceeE--EeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCC
Q psy5806 901 TLATGRAKR--AYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNN 976 (1332)
Q Consensus 901 ~~dG~~~~~--l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~n 976 (1332)
++....... .......|+...+. +.|++.+....+.|..++..+++.+.. ++.+- .|.. .+=.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-i~~g~-------~p~~--~~~~--- 222 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-IDTGK-------KPHP--GPGA--- 222 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-EE-SS-------SBEE--TTEE---
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-eeccc-------cccc--cccc---
Confidence 986543222 22234566666665 557888888888998888777743321 11000 0000 0000
Q ss_pred CCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCC
Q psy5806 977 GGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSK 1056 (1332)
Q Consensus 977 GgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~ 1056 (1332)
-++-|. +..-+..... ....+-....+. +++-+.....++..|+....+..+..+|+.
T Consensus 223 ------~~php~-----~g~vw~~~~~-------~~~~~~~ig~~~----v~v~d~~~wkvv~~I~~~G~glFi~thP~s 280 (369)
T PF02239_consen 223 ------NFPHPG-----FGPVWATSGL-------GYFAIPLIGTDP----VSVHDDYAWKVVKTIPTQGGGLFIKTHPDS 280 (369)
T ss_dssp ------EEEETT-----TEEEEEEEBS-------SSSEEEEEE--T----TT-STTTBTSEEEEEE-SSSS--EE--TT-
T ss_pred ------cccCCC-----cceEEeeccc-------cceecccccCCc----cccchhhcCeEEEEEECCCCcceeecCCCC
Confidence 000000 0000111100 011100111111 111122233445555555556888899999
Q ss_pred cEEEEE---eCCCCeEEEEECCCCCCceeEee--c-CCCCceeeEEEecCCeEEEEcCCCc-eEEEEeeCCce-EEEEec
Q psy5806 1057 NLIYFA---DMRSGNLRTFDMSDSTRIKPIPL--M-NDTIRDNFVIDWVANNIYYIDSQMH-TINVARSDGQH-KKILVN 1128 (1332)
Q Consensus 1057 ~~lY~s---d~~~~~I~~~~l~~g~~~~~i~~--~-~~~~p~glAvDw~~~~LY~td~~~~-~I~v~~ldG~~-~~~~~~ 1128 (1332)
++||+. +...+.|..++..+. +++.. . ....+..+.++..++.+|++....+ +|.++|..... ...+.
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~- 356 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP- 356 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred ccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE-
Confidence 999887 455688999996632 33221 1 1224889999999999999988877 99999887443 33354
Q ss_pred CCCCceEE
Q psy5806 1129 DLMEPLAI 1136 (1332)
Q Consensus 1129 ~~~~P~~i 1136 (1332)
+..|.|+
T Consensus 357 -~~tP~G~ 363 (369)
T PF02239_consen 357 -VPTPTGK 363 (369)
T ss_dssp ---SEEEE
T ss_pred -eeCCCeE
Confidence 6778875
|
... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=92.77 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=137.5
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCccc-----ccCCccceEEEEEeC---CCcEEEEEeCCC--------CeEEEEECC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTL-----PFPEYMSSIFFDYHY---SKNLIYFADMRS--------GNLRTFDMS 1075 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~-----pi~~~~~~~~id~d~---~~~~lY~sd~~~--------~~I~~~~l~ 1075 (1332)
...++++.+...|+.+..+... ...+. ...+.....+|++++ .++.||++-... .+|.|+.++
T Consensus 12 dG~l~v~e~~G~i~~~~~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~ 90 (331)
T PF07995_consen 12 DGRLLVAERSGRIWVVDKDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLS 90 (331)
T ss_dssp TSCEEEEETTTEEEEEETTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEE
T ss_pred CCcEEEEeCCceEEEEeCCCcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEecc
Confidence 3455666654437777733222 11111 122345678999998 368899876532 468888876
Q ss_pred CC----CCceeEeec------CCCCceeeEEEecCCeEEEEcC-------------CCceEEEEeeCCc-----------
Q psy5806 1076 DS----TRIKPIPLM------NDTIRDNFVIDWVANNIYYIDS-------------QMHTINVARSDGQ----------- 1121 (1332)
Q Consensus 1076 ~g----~~~~~i~~~------~~~~p~glAvDw~~~~LY~td~-------------~~~~I~v~~ldG~----------- 1121 (1332)
.+ +..++++.. ......+|++++.+ .||++-. ..+.|..++.||+
T Consensus 91 ~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~ 169 (331)
T PF07995_consen 91 DGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDD 169 (331)
T ss_dssp TTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTST
T ss_pred CCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCC
Confidence 44 112333321 23355679999754 9999721 1457888888987
Q ss_pred --eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc---------------------------eE
Q psy5806 1122 --HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY---------------------------RT 1172 (1332)
Q Consensus 1122 --~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~---------------------------~~ 1172 (1332)
..++...++..|.++++||..|.||.+|.+.. ....|.++.- |.+ .-
T Consensus 170 ~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~---~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P 245 (331)
T PF07995_consen 170 GADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD---GWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPP 245 (331)
T ss_dssp TSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS---SSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---
T ss_pred CceEEEEEeCCCccccEEEECCCCcEEEEccCCC---CCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCcc
Confidence 34556679999999999998899999997751 1234555432 222 00
Q ss_pred EEEecCCCCcceEEEecC------CCEEEEEEcCCCeEEEEecCCCc----eEEEEe--ecccceEEEecCCccccccEE
Q psy5806 1173 VLVEEDLAFPNELAIDFK------QRRLFWADSTNKRIEYCDFFGRS----RKIVIS--KVAPYGLSVRQSPGKAFIVEL 1240 (1332)
Q Consensus 1173 ~l~~~~l~~p~glaiD~~------~~~LY~~d~~~~~I~~~d~dG~~----~~~~~~--~~~P~glav~~~~~~~~~~~l 1240 (1332)
++.-..-..|.|+++-.. .+.+++++...++|.++.++... .+.++. ...|.+|++ +.+|.|
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~------~pDG~L 319 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ------GPDGAL 319 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE------ETTSEE
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE------cCCCeE
Confidence 000111145888887632 56799999999999999997332 222233 447999999 567999
Q ss_pred EEEECCCCEEEE
Q psy5806 1241 YWTDWEAMSVVI 1252 (1332)
Q Consensus 1241 Ywtd~~~~~V~~ 1252 (1332)
|+++-.+++|+|
T Consensus 320 yv~~d~~G~iyR 331 (331)
T PF07995_consen 320 YVSDDSDGKIYR 331 (331)
T ss_dssp EEEE-TTTTEEE
T ss_pred EEEECCCCeEeC
Confidence 999989999987
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-05 Score=81.86 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=179.1
Q ss_pred cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCcc
Q psy5806 913 VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFT 991 (1332)
Q Consensus 913 ~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~ 991 (1332)
....|+.++.. ++.+++++..++.|-+.+..+|++.+--++ .+
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg------------~G------------------------ 103 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG------------SG------------------------ 103 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC------------CC------------------------
Confidence 56788889988 567999999999999999999855432111 00
Q ss_pred ccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEE
Q psy5806 992 CACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLR 1070 (1332)
Q Consensus 992 C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~ 1070 (1332)
+-|+|.++..|+ ..++.-.. .. |+|++-+....+...+|... -.|.-...||.. +.|+|+.. .|.--
T Consensus 104 -a~Phgiv~gpdg-------~~Witd~~-~a-I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~-G~lWFt~q-~G~yG 171 (353)
T COG4257 104 -ASPHGIVVGPDG-------SAWITDTG-LA-IGRLDPKTLEVTRFPLPLEHADANLETAVFDPW-GNLWFTGQ-IGAYG 171 (353)
T ss_pred -CCCceEEECCCC-------CeeEecCc-ce-eEEecCcccceEEeecccccCCCcccceeeCCC-ccEEEeec-cccce
Confidence 125666665554 23333222 26 88888765544433333221 123445567866 46888863 33333
Q ss_pred EEECCCCCCceeEeec-CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe--cC-CCCceEEEEcCCCcEEE
Q psy5806 1071 TFDMSDSTRIKPIPLM-NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV--ND-LMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1071 ~~~l~~g~~~~~i~~~-~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~--~~-~~~P~~iavdp~~g~Ly 1146 (1332)
|++. .++.-.++.. ....|.||.+.+ .+.||++....+.|-.++.-....+++. +. ...-|.|-+|| .|+++
T Consensus 172 rLdP--a~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-ig~~w 247 (353)
T COG4257 172 RLDP--ARNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-IGRAW 247 (353)
T ss_pred ecCc--ccCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-cCcEE
Confidence 4442 2233333333 345899999995 6788888877777766655322344421 12 23457888999 89999
Q ss_pred EEecCCCCCCCCCcEEEEecCCCce-EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYR-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPY 1224 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~ 1224 (1332)
.|+|+. ++++|++..-..- +--+...-.+|..|-+| ..+|++.+|...+.|.++|..-..-+++-. ..++-
T Consensus 248 ittwg~------g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 248 ITTWGT------GSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred EeccCC------ceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCcccceEEEecCCCCCCC
Confidence 999987 8899998865542 22233334678899999 778999999999999998886544444333 56666
Q ss_pred eEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1225 GLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1225 glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
-+.+ +.-.+.|+++......+.+..
T Consensus 321 n~ql-----~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 321 NIQL-----DGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ceec-----cCCCCceeecccCcceeEEEE
Confidence 6777 345678888888777766554
|
|
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-07 Score=93.25 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=60.9
Q ss_pred CCCCEEecCCC-E-EEeeeecCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecC
Q psy5806 60 SPDEHRCTTGH-C-ILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137 (1332)
Q Consensus 60 ~~~~f~C~~g~-C-i~~~~~CDg~~DC~DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~ 137 (1332)
..+.|+|.+|. - |+..+++|++-||+|||||.+-. .|..+ .|+|.|... ...-|+
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTs-AC~~~-~FyC~N~g~---------------------~p~~i~ 90 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTS-ACSNG-KFYCENKGH---------------------IPRYIP 90 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCCCCCCccccc-cCcCc-eEeeccCCC---------------------CCceee
Confidence 44679999773 4 99999999999999999997632 27666 999998311 123678
Q ss_pred CccccCCCCC---CCCCCCCCCCcCCc
Q psy5806 138 KKYLCDGKKH---CPRGEEGPDERHCP 161 (1332)
Q Consensus 138 ~~~~Cdg~~d---C~dg~de~d~~~C~ 161 (1332)
..+|=||+.| |-||||| ....|.
T Consensus 91 ~s~VnDGICDy~~CCDGSDE-~~~~C~ 116 (176)
T PF12999_consen 91 SSRVNDGICDYDICCDGSDE-SGGKCP 116 (176)
T ss_pred hhhhcCCcCcccccCCCCCC-CCCCCc
Confidence 8889999999 9999999 334565
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-05 Score=83.32 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=140.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEE-EcCCCceEEEEeeCCceE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYY-IDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~-td~~~~~I~v~~ldG~~~ 1123 (1332)
.+..++.|++..+.||-+--....|..++++ |.-..++-..+...|++|++= +++.|+ +|....++.++.++-...
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEEEcCCcc
Confidence 3578999999999999887666789889877 877788877889999999876 788777 466677888877763321
Q ss_pred EE--------Eec---CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec----C----CCCcce
Q psy5806 1124 KI--------LVN---DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----D----LAFPNE 1184 (1332)
Q Consensus 1124 ~~--------~~~---~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----~----l~~p~g 1184 (1332)
.. +.. ....--|+|-||.++.||++-... .-+|+.+..+-+....-+.. . +....|
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-----P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-----PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-----CcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 11 111 122347899999999999996543 35677776543221111110 0 233568
Q ss_pred EEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe----------ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
|.+|..++.|++--..+..+...|.+|..+..+.- ...|.|||. |++|.||+.. +-+..++..
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiam------Dd~g~lYIvS-EPnlfy~F~ 310 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAM------DDDGNLYIVS-EPNLFYRFT 310 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEE------CCCCCEEEEe-cCCcceecc
Confidence 99999899999988889999999999987655531 678899999 7788899886 444555544
Q ss_pred e
Q psy5806 1255 E 1255 (1332)
Q Consensus 1255 ~ 1255 (1332)
+
T Consensus 311 ~ 311 (316)
T COG3204 311 P 311 (316)
T ss_pred c
Confidence 3
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=80.60 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=119.3
Q ss_pred eeccccc-ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEE-EEeCCCCeEEEEe
Q psy5806 733 LPLRQLK-MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIY-WTDMNAQTIMVSD 810 (1332)
Q Consensus 733 ~~~~~~~-~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLY-wtD~~~~~I~v~~ 810 (1332)
.+++++. ++.+|+|++.+++||-.......|...+++|.-..++--.+...++||++ +++..| .++...+++.++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y--~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITY--LGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEE--ECCCEEEEEEcCCCcEEEEE
Confidence 4566665 59999999999999988888899999999987777776677889999999 444444 4566678888888
Q ss_pred CC--CCc--eEE---E--Eec--CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec--CCCCcEEEec------c-
Q psy5806 811 ID--GKN--AKV---L--FWL--NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM--DGTNRAVFET------E- 870 (1332)
Q Consensus 811 ld--G~~--~~~---l--~~~--~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~--dG~~~~~l~~------~- 870 (1332)
.+ ++. +.. + -.. +-.-..|||.||.++.||.+--... .+|..... .+....+... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P----~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP----KRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS----EEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC----hhhEEEccccCccceeeccccccccccc
Confidence 73 221 111 1 111 1123689999999999998742221 24555554 2223232221 1
Q ss_pred -cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe--c-------cCCcceEEEEe-CCEEEEEeC
Q psy5806 871 -VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--A-------VQSHPYTLTVL-DYYVYWTDV 932 (1332)
Q Consensus 871 -l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~--~-------~~~~P~~la~~-~~~iywtD~ 932 (1332)
+..|++|++|+.+ +.||.......+|..++.+|.-...+. . .+.+|-|||++ ++.||.+.-
T Consensus 169 ~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 169 FVRDLSGLSYDPRT-GHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp -SS---EEEEETTT-TEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred eeccccceEEcCCC-CeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 5679999999999 999999999999999999997555442 1 35789999999 668988864
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=84.01 Aligned_cols=185 Identities=21% Similarity=0.200 Sum_probs=120.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCC------------CeEEEEECCCCCCceeEee-c----CCCCceeeEEEecC-----CeE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS------------GNLRTFDMSDSTRIKPIPL-M----NDTIRDNFVIDWVA-----NNI 1103 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~------------~~I~~~~l~~g~~~~~i~~-~----~~~~p~glAvDw~~-----~~L 1103 (1332)
++.++..|. .++||+.|.+. .+|..++|.++.-..++.. . .......|+||-.. +.+
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 356677774 45788888542 3677888775443222221 1 22356789999643 579
Q ss_pred EEEcCCCceEEEEeeC-CceEEEEec-------------------CCCCceEEEEcC---CCcEEEEEecCCCCCCCCCc
Q psy5806 1104 YYIDSQMHTINVARSD-GQHKKILVN-------------------DLMEPLAIAVYP---RRGLLFYSHWGLYDNSPTTK 1160 (1332)
Q Consensus 1104 Y~td~~~~~I~v~~ld-G~~~~~~~~-------------------~~~~P~~iavdp---~~g~Lywtd~~~~~~~~~~~ 1160 (1332)
|+||.....|.|+++. |+.++++.. ..+...|||+.| ..++|||.-..+ .+
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss------~~ 154 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS------RK 154 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------SE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC------Cc
Confidence 9999999999999997 555555321 112357888877 456899998655 57
Q ss_pred EEEEec----CCCc---------eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC----CceEEEEe----
Q psy5806 1161 IEKVYL----DGSY---------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG----RSRKIVIS---- 1219 (1332)
Q Consensus 1161 I~r~~l----dG~~---------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG----~~~~~~~~---- 1219 (1332)
++++.. +.+. .+.+.. ......|+++|. ++.||+++...+.|.+.+.++ .+.++++.
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~ 232 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRT 232 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-
T ss_pred EEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCce
Confidence 888876 2211 223333 224567999996 899999999999999999998 45556665
Q ss_pred ecccceEEEecCCcccc--ccEEEEEEC
Q psy5806 1220 KVAPYGLSVRQSPGKAF--IVELYWTDW 1245 (1332)
Q Consensus 1220 ~~~P~glav~~~~~~~~--~~~lYwtd~ 1245 (1332)
+..|.+|++ +. +++||++..
T Consensus 233 l~~pd~~~i------~~~~~g~L~v~sn 254 (287)
T PF03022_consen 233 LQWPDGLKI------DPEGDGYLWVLSN 254 (287)
T ss_dssp GSSEEEEEE-------T--TS-EEEEE-
T ss_pred eeccceeee------ccccCceEEEEEC
Confidence 789999999 33 499999874
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=67.58 Aligned_cols=42 Identities=33% Similarity=0.740 Sum_probs=37.8
Q ss_pred EEEeCCCCCCceEEEcCCCCeEEEEecCCCCceeEecCCCCCc
Q psy5806 241 ILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNR 283 (1332)
Q Consensus 241 ~l~~~~~~~pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~ 283 (1332)
+++...+..|.+||+||.+++|||+|+.. ..|+|+.|||+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~-~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCC-CEEEEEeCCCCCC
Confidence 45667899999999999999999999986 8999999999864
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00062 Score=81.55 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-----Eee-cCCCCceeeEEEec------CCeEEEEcC-
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-----IPL-MNDTIRDNFVIDWV------ANNIYYIDS- 1108 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-----i~~-~~~~~p~glAvDw~------~~~LY~td~- 1108 (1332)
.++..|.+|+|.+. +++|+++...|+|++++..++....+ ++. .+.+.+.|||+++. ++.||++-.
T Consensus 27 ~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 27 SGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 46778999999986 58999986679999997443322111 111 24567899999854 467999742
Q ss_pred --------CCceEEEEeeCCc-----eEEEEecCC-----CCceEEEEcCCCcEEEEEecCCC-----------------
Q psy5806 1109 --------QMHTINVARSDGQ-----HKKILVNDL-----MEPLAIAVYPRRGLLFYSHWGLY----------------- 1153 (1332)
Q Consensus 1109 --------~~~~I~v~~ldG~-----~~~~~~~~~-----~~P~~iavdp~~g~Lywtd~~~~----------------- 1153 (1332)
...+|.++.++.. ..+++..++ -.-..|+++| .|+||++--...
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~ 184 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTP 184 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhcccc
Confidence 2456777777521 123333322 1245799999 789999842210
Q ss_pred --------C-CCCCCcEEEEecCCCc----------eEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1154 --------D-NSPTTKIEKVYLDGSY----------RTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1154 --------~-~~~~~~I~r~~ldG~~----------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+ +...++|.|++.||+. +..|...++..|.||++|+ +++||.+|-+
T Consensus 185 ~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 185 TQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 0 1124689999999973 3457777889999999998 7899999865
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-05 Score=86.27 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=99.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC----CceeeEEEecCCeEEEEcCCC----ceEEEEe
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT----IRDNFVIDWVANNIYYIDSQM----HTINVAR 1117 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~----~p~glAvDw~~~~LY~td~~~----~~I~v~~ 1117 (1332)
.|.||+|+.+++.||++|...| +..++.. |...+.+.....+ -..+|.||. ++.|||||+.. ..+..+-
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlG-L~~V~p~-g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLG-LLKVGPE-GGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CcceEEeccCCCeEEEEeccee-eEEECCC-CCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEee
Confidence 4789999999999999998777 7777766 4444444433333 457899998 99999999874 1122222
Q ss_pred eC----C---------ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---EEEEecCCCC
Q psy5806 1118 SD----G---------QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---TVLVEEDLAF 1181 (1332)
Q Consensus 1118 ld----G---------~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---~~l~~~~l~~ 1181 (1332)
+. | +..+++..++.-|+|||++|.+.++.+++... .+|.|..+.|... +++++.-.+.
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~------~ri~rywi~g~k~gt~EvFa~~LPG~ 266 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT------ARIKRYWIKGPKAGTSEVFAEGLPGY 266 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc------ceeeeeEecCCccCchhhHhhcCCCC
Confidence 22 2 22334567899999999999999999999765 8999999999876 6666544578
Q ss_pred cceEEEecC
Q psy5806 1182 PNELAIDFK 1190 (1332)
Q Consensus 1182 p~glaiD~~ 1190 (1332)
|.-|..|.+
T Consensus 267 PDNIR~~~~ 275 (376)
T KOG1520|consen 267 PDNIRRDST 275 (376)
T ss_pred CcceeECCC
Confidence 888888843
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=64.58 Aligned_cols=42 Identities=45% Similarity=0.838 Sum_probs=38.4
Q ss_pred EEecCCccCceeeeeecCCCeEEEEeCCCCeEEEEeCCCCcE
Q psy5806 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRR 326 (1332)
Q Consensus 285 ~l~~~~~~~p~gl~iD~~~~rlYw~D~~~~~i~~~~~dG~~~ 326 (1332)
+++.+.+..|+||++|..+++|||+|.....|++++++|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 456678999999999999999999999999999999999863
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=80.85 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=125.1
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
.....|++++++|+|+.... ..|+.+++..| ..+.+. ...+.....++.+.++.|+++... ...|.++++++..
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VREKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCC-CeEEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 34678899999998876443 46999998743 333332 222233467888889989886433 3358888887665
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|+++++++...+.+.... ....+.++.++++.||++....
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC
Confidence 544433333456678899888888875322 2468999999876655554322 2334568899999999986543
Q ss_pred -CeEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCC--EEEEEEec
Q psy5806 1202 -KRIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREK 1256 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~ 1256 (1332)
..|..+|+++...+.+.. ...| +.+- ++.+|+++....+ .++.++..
T Consensus 373 ~~~I~~~dl~~g~~~~lt~~~~d~~p-s~sp-------dG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTSTRLDESP-SVAP-------NGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ceEEEEEECCCCCeEEccCCCCCCCc-eECC-------CCCEEEEEEecCCceEEEEEECC
Confidence 368889998776554443 2223 3333 7778888765333 46677753
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=70.64 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=59.6
Q ss_pred eEEEEcCCCcEEEEEecCCC-C----------CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLY-D----------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~-~----------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+|+|++..|.+||||.... . ..+.+++.+.++.....+++.. +|..|||+++++++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Confidence 37899997799999995421 1 3357899999999988777776 7999999999999999999999999
Q ss_pred eEEEEecCC
Q psy5806 1203 RIEYCDFFG 1211 (1332)
Q Consensus 1203 ~I~~~d~dG 1211 (1332)
||.++-+.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999998887
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0034 Score=77.00 Aligned_cols=201 Identities=7% Similarity=-0.048 Sum_probs=131.4
Q ss_pred ceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......|.+.+++|+++... ...|+..++..| ..+.+. ...+...+.++.+.++.|+++-.. ...|.++++++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QRELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cEEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 45678899999988887643 357999998744 333332 222334567788888888776433 346888888866
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
....+..........+.+|...+|+++.... +...|++.+++|...+.+.... ..-...++.+++++|+++....
T Consensus 281 ~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 281 TTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred ceEEccCCCCccCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCC
Confidence 5555543333345678889777777764322 2468999999998776665422 2234467888999998876443
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC-----CEEEEEEecCC
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA-----MSVVIAREKSD 1258 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~-----~~V~~~~~~~g 1258 (1332)
.+|..++++|...+.+.......++++ .+++.+||++-... ..++++++.++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~~~~~p~~-----spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGFLVEGPTW-----APNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCCCCCCCeE-----CCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 479999998876555444333445566 34677888765432 46889987655
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.011 Score=71.08 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=103.4
Q ss_pred eEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEE------Ee-cCCCCCeEEEEeCC------CCeEE
Q psy5806 774 ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVL------FW-LNLYRPRSIVVHYG------LGLMV 840 (1332)
Q Consensus 774 ~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l------~~-~~~~~P~~Iavdp~------~g~ly 840 (1332)
.+++.+++..|-+|++...+ .||++.....+|.+.+.++.....+ +. .+..-+-+||+||. +++||
T Consensus 22 ~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 34567889999999998765 6999998778888887654433222 11 13456899999965 46888
Q ss_pred EEecccCcC----CCCceEEEecCCC-----CcEEEeccc---cc--CceeEEeCCCCCeEEEEeCC-------------
Q psy5806 841 WADWSRTRL----TNNRIEMAHMDGT-----NRAVFETEV---IW--PSCLAIDYSDNPKLYWVDTS------------- 893 (1332)
Q Consensus 841 wtd~g~~~~----~~~~I~r~~~dG~-----~~~~l~~~l---~~--P~gl~iD~~~~~~lYw~d~~------------- 893 (1332)
++-...... ...+|.|..++.. +.++|+..+ .. -..|+++.++ +||++-..
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG--~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG--KIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC--cEEEEECCCCCCCcccccCcc
Confidence 874211000 1257999887632 234444332 11 1257888766 79995322
Q ss_pred -------------------CCeEEEEccCCCc-----------eeEEeccCCcceEEEEe-CCEEEEEeCCC
Q psy5806 894 -------------------KHTIEYKTLATGR-----------AKRAYAVQSHPYTLTVL-DYYVYWTDVQH 934 (1332)
Q Consensus 894 -------------------~~~I~~~~~dG~~-----------~~~l~~~~~~P~~la~~-~~~iywtD~~~ 934 (1332)
.++|.+++.||+. .++....+..|++++++ .+.||.+|...
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCC
Confidence 2478999999862 23334488899999988 66888888664
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0006 Score=71.66 Aligned_cols=194 Identities=12% Similarity=0.132 Sum_probs=116.8
Q ss_pred EEeecCCCceEEEEecCCCce----------EEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCC
Q psy5806 743 SVDVDTKNEYIYWSDISEKTI----------ERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I----------~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld 812 (1332)
+..+|...+.|||.|...+.| +|+.++|....-++-.-...|++.|+= -+. +.-..++|
T Consensus 19 gp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~----------~G~-kf~i~nwd 87 (310)
T KOG4499|consen 19 GPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVG----------CGS-KFVIVNWD 87 (310)
T ss_pred CCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEe----------ecc-eEEEEEcc
Confidence 345667778899988655554 555555543322322223444444442 111 23444555
Q ss_pred CCceEEEEecC-------C--CCCeEEEEeCCCCeEEEEec---ccCcCCCCceEEEecCCCCcEEEecccccCceeEEe
Q psy5806 813 GKNAKVLFWLN-------L--YRPRSIVVHYGLGLMVWADW---SRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAID 880 (1332)
Q Consensus 813 G~~~~~l~~~~-------~--~~P~~Iavdp~~g~lywtd~---g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD 880 (1332)
|....+++... . .+-..=.|||. |+.|.-.. +.......---+..+-|.....+.+.+.-||||+-|
T Consensus 88 ~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd 166 (310)
T KOG4499|consen 88 GVSESAKVYRTLFEVQPDRKKNRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD 166 (310)
T ss_pred cccceeeeeeeccccCchHHhcccccCccCCC-CceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccc
Confidence 54333322111 0 12223346776 55455322 111000111224455566666677778889999999
Q ss_pred CCCCCeEEEEeCCCCeEEEEccC---C--CceeEEec-------cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeE
Q psy5806 881 YSDNPKLYWVDTSKHTIEYKTLA---T--GRAKRAYA-------VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKD 947 (1332)
Q Consensus 881 ~~~~~~lYw~d~~~~~I~~~~~d---G--~~~~~l~~-------~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~ 947 (1332)
.+. ...|+.|+.+-.|...++| | ++|+++.. .-..|-|++++ +++||.+-|..++|+++++.+|+.
T Consensus 167 ~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 167 SDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred ccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 888 9999999999999777754 2 46666653 23457899998 789999999999999999999965
Q ss_pred EE
Q psy5806 948 IV 949 (1332)
Q Consensus 948 i~ 949 (1332)
+.
T Consensus 246 L~ 247 (310)
T KOG4499|consen 246 LL 247 (310)
T ss_pred EE
Confidence 54
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.093 Score=60.69 Aligned_cols=395 Identities=14% Similarity=0.126 Sum_probs=203.6
Q ss_pred CCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCC-----eEEEEeCCCCceEEEEecC
Q psy5806 749 KNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQ-----TIMVSDIDGKNAKVLFWLN 823 (1332)
Q Consensus 749 ~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~-----~I~v~~ldG~~~~~l~~~~ 823 (1332)
.+..||+.+...+.+.|+.--|+.-.. +.| .++.++-|.-||.... .......||..-..+ +
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT~--------VaG--~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---n 171 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFTR--------VAG--WIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL---N 171 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccce--------eec--cCCCCCEEEEeccCCCcccceeeeEEccCCceeeec---c
Confidence 445788888888888887544432211 111 1223444444554432 233444455522211 1
Q ss_pred CCCCe------EEEEeCC--CCeEEEEecccCcCCCCceEEEecCCCCcEEEecc---cccCceeEEeCCCCCeEEEEeC
Q psy5806 824 LYRPR------SIVVHYG--LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE---VIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 824 ~~~P~------~Iavdp~--~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~---l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
+.-.. +|.|-.. ...-+|-.+. .++.++|+...-.|..-+.+++- +.+|.=+ + +|+|+...
T Consensus 172 lGpathiv~~dg~ivigRntydLP~WK~Yk--GGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV-----~-~RvYFlsD 243 (668)
T COG4946 172 LGPATHIVIKDGIIVIGRNTYDLPHWKGYK--GGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV-----G-ERVYFLSD 243 (668)
T ss_pred CCceeeEEEeCCEEEEccCcccCccccccc--CCccceEEEEecCCcceeeeeecCCCcCCceEE-----c-ceEEEEec
Confidence 11111 1111111 1234555442 11336787777777555555543 6676543 4 79999764
Q ss_pred --CCCeEEEEccCCCceeEEec-cCCcceE-------EEE-eCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEe
Q psy5806 893 --SKHTIEYKTLATGRAKRAYA-VQSHPYT-------LTV-LDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVR 961 (1332)
Q Consensus 893 --~~~~I~~~~~dG~~~~~l~~-~~~~P~~-------la~-~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~ 961 (1332)
+.+.|+++|++|...+.--. .--.|.. |.+ .++.||--|..+.++.+.+ -++|.+.+
T Consensus 244 ~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekld--------I~lpl~rk---- 311 (668)
T COG4946 244 HEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLD--------IGLPLDRK---- 311 (668)
T ss_pred ccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeee--------cCCccccc----
Confidence 45799999999976443211 1111211 222 2566666666666665533 22221110
Q ss_pred ccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCccccc
Q psy5806 962 AAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPF 1041 (1332)
Q Consensus 962 ~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi 1041 (1332)
..+++- .+|-.-. ..|.+ .+..++.++++.+ ...... ... ..+++
T Consensus 312 ~k~~k~-~~pskyl--------------------edfa~---------~~Gd~ia~VSRGk-aFi~~~--~~~--~~iqv 356 (668)
T COG4946 312 KKQPKF-VNPSKYL--------------------EDFAV---------VNGDYIALVSRGK-AFIMRP--WDG--YSIQV 356 (668)
T ss_pred cccccc-cCHHHhh--------------------hhhcc---------CCCcEEEEEecCc-EEEECC--CCC--eeEEc
Confidence 112211 1221100 00111 1344555555565 332221 111 12232
Q ss_pred CCccceEEEEEe---CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1042 PEYMSSIFFDYH---YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1042 ~~~~~~~~id~d---~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
.. ..++-|. ...+.+-...-....|-.++.+ +...+.+ ..++++.+.++++..+..+-+++. +..|-++++
T Consensus 357 ~~---~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNd-r~el~vidi 430 (668)
T COG4946 357 GK---KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKRI-EKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDI 430 (668)
T ss_pred CC---CCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEEe-eCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEe
Confidence 22 2223332 2223344444344477777765 4444444 378899999999998888877764 456778899
Q ss_pred CCceEEEE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1119 DGQHKKIL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1119 dG~~~~~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
+....+.+ .+...-..+++.+|...++-++=..++ -+..|...+|+|...-.+.+ ....-..=|+|++++.||+-
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy---~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY---YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcce---eeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEE
Confidence 85444443 334456788999998777766643321 24568888999966443332 33333445899999999997
Q ss_pred EcCCCeEEEEecCCCceEEEEe-----ecccceEEE
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS-----KVAPYGLSV 1228 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~-----~~~P~glav 1228 (1332)
.... +|-++-+++.+ ...|+=+.+
T Consensus 507 s~Rs-------LdPs~Drv~fnf~f~~vskPylv~L 535 (668)
T COG4946 507 SARS-------LDPSNDRVIFNFSFQRVSKPYLVVL 535 (668)
T ss_pred eccc-------cCCCCCeeEEEEEEeeeccceEEEe
Confidence 5432 44443333332 455665555
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.029 Score=62.83 Aligned_cols=201 Identities=11% Similarity=0.018 Sum_probs=127.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKIL 1126 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~ 1126 (1332)
..+.+.+.++.|+.+. ..+.|+..++.++.....+. .....+..++++.. ++++++....+.|.++++. ++....+
T Consensus 55 ~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 55 RDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred eEEEECCCCCEEEEEc-CCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 4888888876776665 57889888877433333222 22335677787755 4566666667789999997 4444444
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
......+..++++|.+.+|+..... +.|...++........+...-.....++++++++.|+.+.. .+.|..
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i 203 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKL 203 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEE
Confidence 4333568999999975555554412 45777777644433333333345778899888778887755 788999
Q ss_pred EecCCCceEEEE-e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1207 CDFFGRSRKIVI-S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1207 ~d~dG~~~~~~~-~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|+......... . ...+.++++ ..++.++++-...+.|...+..++ .....+.
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~ 258 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAF------SPDGYLLASGSEDGTIRVWDLRTG---ECVQTLS 258 (289)
T ss_pred EECCCCceecchhhcCCceEEEEE------cCCCcEEEEEcCCCcEEEEEcCCc---eeEEEcc
Confidence 998743332222 2 445677777 122556666656788988887766 4444444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0062 Score=74.63 Aligned_cols=199 Identities=9% Similarity=0.015 Sum_probs=126.0
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~ 1122 (1332)
.....|++.+++|+++.... ..|+.+++..|. .+.+. ...+.....++.+.++.|+++-. +...|.++++++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 45678899998999886543 469999987433 33332 22223346788888998987633 23468888988655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+++|...+|+++.... +...|+++++++...+.+...+ ......++.++++.|+++....
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCC
Confidence 444433323345678899777787774221 2467999999876655554322 3344678999999999986543
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecC
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKS 1257 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~ 1257 (1332)
..|...|+++...+.+.........+. .+++.+|+++.. ....|+.++..+
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~~~~p~~-----spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSLDESPSF-----APNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCCCCCceE-----CCCCCEEEEEEecCCceEEEEEECCC
Confidence 368999997765544433222233344 336777777664 345677777643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0095 Score=73.01 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=125.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......+++.+++|+|+.... ..|+..++.+|. .+.+. ...+.....++.+.++.|+++-.. ...|.+.++++.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEcc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 346778999999998765443 469999987443 33332 222233456777778888876432 346888898876
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+..........+.+|....||++.... +...|++.++++...+.+.... ......+++++++.|+++....
T Consensus 278 ~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 278 QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CeEEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC
Confidence 5554443323345567888777887774322 2468999999877665554322 2223457888999999987543
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC--CEEEEEEecC
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKS 1257 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~ 1257 (1332)
..|..+|+++...+.+.........++ .+.+.+|+++.... ..|+.++..+
T Consensus 353 ~~~~l~~~dl~tg~~~~lt~~~~~~~p~~-----spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRILTDTSLDESPSV-----APNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CceEEEEEECCCCCEEEccCCCCCCCceE-----CCCCCEEEEEEecCCceEEEEEECCC
Confidence 358899998766555544211122344 33778888887543 4567777643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.012 Score=71.74 Aligned_cols=189 Identities=10% Similarity=-0.000 Sum_probs=119.6
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
....++++.+++|+|+.... ..|+.+++.++. ...+. ...+....+++.+.++.||++... ...|...++++..
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 45667899999999987544 568888877432 22222 222344567888778889886443 3468788887654
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|+++++++...+.+... -.....++++++++.|+++....
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCC
Confidence 444332222233457788777787765322 246899999988776555432 24455678899999999987643
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
.+|..+|+++...+.+.........++ .+++++|+++....
T Consensus 345 ~~~i~~~d~~~~~~~~l~~~~~~~~p~~-----spdg~~l~~~~~~~ 386 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTDTGLDESPSF-----APNGRMILYATTRG 386 (417)
T ss_pred ceEEEEEeCCCCCeEEccCCCCCCCceE-----CCCCCEEEEEEeCC
Confidence 378899998765554443222223333 23677888877643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.015 Score=70.96 Aligned_cols=197 Identities=8% Similarity=-0.005 Sum_probs=120.8
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
.....+++.+++|+++.... ..|+..++.+|. ...+. ...+.....++.+.++.|+++-.. ...|.+.++++..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRVVA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEEee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 45778999999998876443 459999987443 22332 222334567888888999876333 3457777777655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|++.++++...+.+...+ ......++.++++.|+++....
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCC
Confidence 444433222334567899777787764221 2478999999877655554322 2223467888999998876543
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC--CEEEEEEe
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIARE 1255 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~ 1255 (1332)
..|...|+++...+.+.........+. .+++.+||++-... ..++.++.
T Consensus 351 ~~~I~v~d~~~g~~~~lt~~~~~~~p~~-----spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTDTTRDESPSF-----APNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cEEEEEEECCCCCeEEccCCCCccCceE-----CCCCCEEEEEEecCCCEEEEEEEC
Confidence 368899988665544443212233444 33677777765432 33566665
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0082 Score=66.44 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=133.3
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCC----CCCceeEee-c------CCCCceeeEEEecCC---------
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD----STRIKPIPL-M------NDTIRDNFVIDWVAN--------- 1101 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~----g~~~~~i~~-~------~~~~p~glAvDw~~~--------- 1101 (1332)
+.+.|+.||++.+.+ .+|++|-..+....++.+. |.....++. . ....|.|++++--..
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 568899999999975 6788887777777666430 122222222 1 234799999983221
Q ss_pred ----eEEEEcCCCceEEEEeeC-Cce----EEE-EecC--CCCceEEEEcCC--CcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1102 ----NIYYIDSQMHTINVARSD-GQH----KKI-LVND--LMEPLAIAVYPR--RGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1102 ----~LY~td~~~~~I~v~~ld-G~~----~~~-~~~~--~~~P~~iavdp~--~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
.|+.+ +.++|..++.. +.. ..+ +..+ -.-=.|+|+-+. ..+||-+|... ++|... |
T Consensus 99 ~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~------g~IDVF--d 168 (336)
T TIGR03118 99 GPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ------GRIDVF--K 168 (336)
T ss_pred cceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCC------CceEEe--c
Confidence 24333 35567666643 111 112 2211 112256777643 56899999865 677755 4
Q ss_pred CCceEEEEecCC--------CCcceEEEecCCCEEEEEEcC-------------CCeEEEEecCCCceEEEEe---eccc
Q psy5806 1168 GSYRTVLVEEDL--------AFPNELAIDFKQRRLFWADST-------------NKRIEYCDFFGRSRKIVIS---KVAP 1223 (1332)
Q Consensus 1168 G~~~~~l~~~~l--------~~p~glaiD~~~~~LY~~d~~-------------~~~I~~~d~dG~~~~~~~~---~~~P 1223 (1332)
++...+-+.... ..|.+|.- -+++||++-+. .+.|..+|++|.-.+.+.+ +..|
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAP 246 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCC
Confidence 444333222111 23555543 47899998543 4689999999997666666 8999
Q ss_pred ceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
.||++--..-..+.+.|.+-+...++|-..|..+| .-+..++..
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~ 290 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDP 290 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCC
Confidence 99999333333356889999999999999999888 444455443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0048 Score=67.79 Aligned_cols=186 Identities=10% Similarity=0.022 Sum_probs=131.4
Q ss_pred cceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEE-eCCCCeEEEEeCCCCceE
Q psy5806 739 KMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWT-DMNAQTIMVSDIDGKNAK 817 (1332)
Q Consensus 739 ~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwt-D~~~~~I~v~~ldG~~~~ 817 (1332)
.+..++.|++.+++||-+-...-.|..+...|--..++--.++..|++|+. +++|.|+. |....++.+..++-.-+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCCccE
Confidence 468899999999999988877788888888988888887788999999887 88888876 666778888888644222
Q ss_pred EE-----Ee-cC----CCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEec-------c--cccCceeE
Q psy5806 818 VL-----FW-LN----LYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET-------E--VIWPSCLA 878 (1332)
Q Consensus 818 ~l-----~~-~~----~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~-------~--l~~P~gl~ 878 (1332)
.. +. +. -.--.|+|-||.++.||++--... -+|....+.-+.-..-.. . +.-.+||.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P----~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP----IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC----cEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 11 10 00 122568999999888888743222 355555533222111110 1 44567999
Q ss_pred EeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe---------ccCCcceEEEEe-CCEEEEEe
Q psy5806 879 IDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY---------AVQSHPYTLTVL-DYYVYWTD 931 (1332)
Q Consensus 879 iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~---------~~~~~P~~la~~-~~~iywtD 931 (1332)
.|... +.|++.......+..++.+|.-+..+. ..++.|-|||.+ ++.||.+.
T Consensus 240 ~~~~~-~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 240 FNAIT-NSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ecCCC-CcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 99888 899998888899999999998655543 156778899998 55777653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.03 Score=68.39 Aligned_cols=199 Identities=8% Similarity=0.056 Sum_probs=124.7
Q ss_pred ceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......+++.+++|.|+... ...|+..++.+|. .+.+. ...+....+++.+.++.|+++... ...|.++++++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35678899999888876533 3468888887433 33332 222233457888889999987433 346888898865
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+..........+.+|....|+++.... ....|+++++++...+.+... .......++.++++.|+++....
T Consensus 278 ~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 278 QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CEEEccCCCCCcCceEECCCCCEEEEEeCCC----CCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccC
Confidence 5544444434556788999777776664221 246899999998776655432 23344578888999998876543
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCC--EEEEEEec
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREK 1256 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~ 1256 (1332)
..|..+|+++...+.+.....-...++ .+++.+|+++....+ .++.++..
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~-----SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTDTFLDETPSI-----APNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CCceEEEEECCCCCeEEeCCCCCCCCceE-----CCCCCEEEEEEcCCCceEEEEEECC
Confidence 458888998766555443111112334 336777777765332 35555553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.055 Score=66.02 Aligned_cols=199 Identities=8% Similarity=-0.032 Sum_probs=118.3
Q ss_pred EEEEEeCCCcE--E-EEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEE--eeC
Q psy5806 1048 IFFDYHYSKNL--I-YFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVA--RSD 1119 (1332)
Q Consensus 1048 ~~id~d~~~~~--l-Y~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~--~ld 1119 (1332)
..-.|.|.+++ + |++... ...|+.+++++| ..+.+.. .-+.....++.+.++.|.++... ...|.+. +++
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 34578888764 3 444432 346999998844 4444432 22334556788889888887532 2244443 443
Q ss_pred C----ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcceEEEecCCCE
Q psy5806 1120 G----QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1120 G----~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+ ..+.+...........+++|...+|+|+.... +...|+++++++.. .+.+.. ........++.+++++
T Consensus 266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECcccccceEEecc-CCCCccceeECCCCCE
Confidence 2 22222222222335678999777787775322 24679999886432 333322 2223345788999999
Q ss_pred EEEEEcC--CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCC
Q psy5806 1194 LFWADST--NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
|+++... ...|..+|+++...+.+.. .....+.+. .+++.+||++-. ....|+.++..++
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~w-----SpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSW-----AIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9887543 3479999998776655554 233445555 335677877643 4567888888766
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.04 Score=66.82 Aligned_cols=198 Identities=7% Similarity=0.009 Sum_probs=122.8
Q ss_pred eEEEEEeCCCcE-EEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1047 SIFFDYHYSKNL-IYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1047 ~~~id~d~~~~~-lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
.....+++.+++ +|++... ...|+.+++.+| ..+.+.. .-+.....++.+.++.|.++... +..|.++++++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 457788998885 7876554 467999998743 3444432 22222234456668888776433 457888888866
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+......-..-..+|...+|||+.... ..+.|++++++|...+.+...+.. + ..+++++++|.++-...
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~~--~-~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGKN--N-SSVSTYKNYIVYSSRET 340 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCCc--C-ceECCCCCEEEEEEcCC
Confidence 5444433211122346889777888886432 247899999998887666543322 2 37889999988876543
Q ss_pred --------CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCC
Q psy5806 1202 --------KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 --------~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
..|..+|++|...+.|.....-...+. .+++..||++.. ....+..++..+.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~-----SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRF-----SSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEE-----CCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 479999998776555544111112333 336777877764 2334677776543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00064 Score=62.34 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=56.7
Q ss_pred eeeEEEecCCeEEEEcCC-----------------CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCC
Q psy5806 1092 DNFVIDWVANNIYYIDSQ-----------------MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~-----------------~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~ 1154 (1332)
.+|+|+..++.|||||+. .+++-..+...+..+++..++..|+|||+++...+|++++.+.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~-- 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR-- 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG--
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC--
Confidence 378999777999999875 2578788888877778878999999999999999999999876
Q ss_pred CCCCCcEEEEecCC
Q psy5806 1155 NSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG 1168 (1332)
.+|.|.-+.|
T Consensus 79 ----~Ri~rywl~G 88 (89)
T PF03088_consen 79 ----YRILRYWLKG 88 (89)
T ss_dssp ----TEEEEEESSS
T ss_pred ----ceEEEEEEeC
Confidence 8999999987
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=97.47 E-value=8.5e-05 Score=49.62 Aligned_cols=23 Identities=48% Similarity=1.132 Sum_probs=21.0
Q ss_pred ceEEeCCCCceecCCCCCcCCCc
Q psy5806 411 RFTCQCPLGLTLSPDNKSCSESP 433 (1332)
Q Consensus 411 ~~~C~C~~G~~L~~d~~tC~~~~ 433 (1332)
+|+|.|+.||+|.+|+++|.+..
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 69999999999999999998754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.018 Score=70.73 Aligned_cols=179 Identities=10% Similarity=-0.056 Sum_probs=112.2
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.+...+. .+.......++.+.++.|+|+... ...|.+.++++...+.+..........+.+|...+|
T Consensus 199 ~l~i~d~d-G~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYD-GYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCC-CCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 45555644 54444443 233344567778788888887433 346888888865544443221223467899987788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEE-eecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVI-SKVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~-~~~~ 1222 (1332)
+++.... ....|+..++++...+.+... .......++.+++++|+++-.. ...|+.+++++...+.+. ....
T Consensus 277 a~~~~~~----g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~ 351 (448)
T PRK04792 277 ALVLSKD----GQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ 351 (448)
T ss_pred EEEEeCC----CCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC
Confidence 8874332 246799999988776655442 2334557888899999887543 456999999765544443 2333
Q ss_pred cceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
..+.++ ++++.+||++....+ .|++++..++
T Consensus 352 ~~~~~~-----SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 352 NLGGSI-----TPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CcCeeE-----CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 334455 346778988876443 6788887776
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0035 Score=76.63 Aligned_cols=189 Identities=6% Similarity=-0.056 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEE-------------------ecCCeEEEEcCCCceEE
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID-------------------WVANNIYYIDSQMHTIN 1114 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvD-------------------w~~~~LY~td~~~~~I~ 1114 (1332)
+.+++||+-|-.+.+|-|++|+.-.-.+++...+.....|+++. ..++.|+.++...+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 34678888888889999999885433333333444456666665 22445555555556677
Q ss_pred EEeeCCceEE-EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1115 VARSDGQHKK-ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1115 v~~ldG~~~~-~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+++.+..... .+..+ .+|+.++++|..+++|+|..+. .....+.-++..-....+.+ ..+...++-.+++.
T Consensus 219 vID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs---E~G~tl~em~a~e~d~~vvf----ni~~iea~vkdGK~ 290 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS---EEGVTLAEMMAAERDWVVVF----NIARIEEAVKAGKF 290 (635)
T ss_pred EEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc---ccCcceeeeccccCceEEEE----chHHHHHhhhCCCE
Confidence 7766632211 12223 4899999999999999996432 01123333332221211222 11111233335666
Q ss_pred EEEEEcCCCeEEEEecCC-----CceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1194 LFWADSTNKRIEYCDFFG-----RSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG-----~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|+ ..++|..+|..- ......++ +..|.|+++ ++++.++|+++..++.|..+|....
T Consensus 291 ~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v-----SPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 291 KTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT-----SPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred EEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEE-----CCCCCEEEEeCCCCCcEEEEEChhh
Confidence 776 356788877653 23334455 999999999 7889999999999999999998664
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.028 Score=68.91 Aligned_cols=179 Identities=9% Similarity=0.009 Sum_probs=110.9
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+.++.+ |...+.+. .........++.+.++.|+++.. +...|.+.++++..++.+........+.+++|...+|
T Consensus 183 ~l~~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 56666654 54444443 23334556677777888877643 2457889999865554443322234567899977788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++-... ....|+..++++.....|... -......++.+++++|+++-.. ...|+.+|++|...+.+.. ...
T Consensus 261 a~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQG----GNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred EEEEecC----CCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 7775332 246799999988876665442 2333456888889888877533 3479999998876555543 222
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
-...+. .+++.+|+++.... ..|+.++..++
T Consensus 336 ~~~~~~-----SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 336 YSTPVW-----SPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred ccCeEE-----CCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 223344 34677887776433 46777886544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.027 Score=68.25 Aligned_cols=186 Identities=12% Similarity=0.025 Sum_probs=115.2
Q ss_pred cEEEEEeCC---CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCe-EEEEcCC--CceEEEEeeCCceEEEEecCC
Q psy5806 1057 NLIYFADMR---SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANN-IYYIDSQ--MHTINVARSDGQHKKILVNDL 1130 (1332)
Q Consensus 1057 ~~lY~sd~~---~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~-LY~td~~--~~~I~v~~ldG~~~~~~~~~~ 1130 (1332)
+.+|++... ...|..++.+ |.+.+.+...+ .-..-+..+.++. +|++... ...|.+.++.+..++.+....
T Consensus 156 r~~~v~~~~~~~~~~l~~~d~d-g~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 156 RKVVFSKYTGPKKSNIVLADYT-LTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred eEEEEEEccCCCcceEEEECCC-CCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence 456666522 2356666655 66655555332 2233455555664 7775443 467889999866555554332
Q ss_pred CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEe
Q psy5806 1131 MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCD 1208 (1332)
Q Consensus 1131 ~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d 1208 (1332)
......+++|...+|.++.... ..+.|+.+++++...+.|.... ..-..-.+.+++++||++... ...|+++|
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 2334566899777888876433 2578999999888766664422 111234688899999998643 33699999
Q ss_pred cCCCceEEEEe-e-cccceEEEecCCccccccEEEEEECCC--------CEEEEEEecCC
Q psy5806 1209 FFGRSRKIVIS-K-VAPYGLSVRQSPGKAFIVELYWTDWEA--------MSVVIAREKSD 1258 (1332)
Q Consensus 1209 ~dG~~~~~~~~-~-~~P~glav~~~~~~~~~~~lYwtd~~~--------~~V~~~~~~~g 1258 (1332)
++|...+.+.. + ..+ ++ ++++.+|.++.... ..|+.++..+|
T Consensus 308 l~~g~~~rlt~~g~~~~---~~-----SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 308 LNSGSVEQVVFHGKNNS---SV-----STYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCCCeEeCccCCCcCc---eE-----CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 99776544433 2 222 33 33777777776533 47888888776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.023 Score=69.63 Aligned_cols=178 Identities=11% Similarity=-0.017 Sum_probs=110.9
Q ss_pred EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEE
Q psy5806 1069 LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Ly 1146 (1332)
|..++.+ |.....+. .+.......++.+.++.|+++... ...|.+.++++..++.+..........+++|...+|+
T Consensus 186 l~i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 186 LQVADSD-GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEECCC-CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 5555544 44444443 222334566777778888887543 3468888998655554432222334678999877888
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-eccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVAP 1223 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P 1223 (1332)
++.... ....|+..++++...+.+.. ........++++++++|+++... ...|+.+++++...+.+.. ....
T Consensus 264 ~~~s~~----g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~ 338 (433)
T PRK04922 264 LTLSRD----GNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN 338 (433)
T ss_pred EEEeCC----CCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc
Confidence 875433 24679999998877655543 22233457888888888877433 3459999987665444433 3333
Q ss_pred ceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
...++ ++++.+|+++.... ..|+.++..++
T Consensus 339 ~~~~~-----SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 339 ARASV-----SPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred cCEEE-----CCCCCEEEEEECCCCceeEEEEECCCC
Confidence 34566 34678888876533 36888887766
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.025 Score=64.79 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=93.7
Q ss_pred CccceeEecCC-----CeEEEEeCCCCeEEEEeC-CCCceEEEEec------------------CCCCCeEEEEeC---C
Q psy5806 783 RTESIAVDAIG-----RKIYWTDMNAQTIMVSDI-DGKNAKVLFWL------------------NLYRPRSIVVHY---G 835 (1332)
Q Consensus 783 ~p~glAvD~~~-----~nLYwtD~~~~~I~v~~l-dG~~~~~l~~~------------------~~~~P~~Iavdp---~ 835 (1332)
....|+||-.. +..|++|.....|.|.++ +|+.++++... ..+...|||+.| .
T Consensus 62 ~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d 141 (287)
T PF03022_consen 62 FLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPD 141 (287)
T ss_dssp GEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTT
T ss_pred ccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCC
Confidence 45568899744 479999999999999998 45666664210 012256778876 3
Q ss_pred CCeEEEEecccCcCCCCceEEEecC----CCCc---------EEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEcc
Q psy5806 836 LGLMVWADWSRTRLTNNRIEMAHMD----GTNR---------AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902 (1332)
Q Consensus 836 ~g~lywtd~g~~~~~~~~I~r~~~d----G~~~---------~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~ 902 (1332)
.++|||.-.... ++.+...+ .+.. +.+.+....-.|+++|..+ .||+++.....|.+.+.
T Consensus 142 ~r~LYf~~lss~-----~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 142 GRWLYFHPLSSR-----KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp S-EEEEEETT-S-----EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEET
T ss_pred ccEEEEEeCCCC-----cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeC
Confidence 458999875433 56665322 2211 1222212344699999955 99999999999999999
Q ss_pred CC----CceeEEec---cCCcceEEEEeC---CEEEEEeCC
Q psy5806 903 AT----GRAKRAYA---VQSHPYTLTVLD---YYVYWTDVQ 933 (1332)
Q Consensus 903 dG----~~~~~l~~---~~~~P~~la~~~---~~iywtD~~ 933 (1332)
++ .+.+++.. .+..|.++++.. ++||++..+
T Consensus 215 ~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 215 DGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp TTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 98 45566654 488999999998 899988643
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.042 Score=67.17 Aligned_cols=179 Identities=7% Similarity=-0.054 Sum_probs=113.9
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.+.+.+. .+.......++.+.++.|.++.. ....|.+.++++...+.+........+++++|...+|
T Consensus 180 ~l~~~d~d-g~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCC-CCCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 56666655 55555554 23334567888888888877532 3457888888865444443222234567899988889
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++.... ....|+..++++...+.+.... ......++.+++++|+++-.. ...|+.++++|...+.+.. ...
T Consensus 258 a~~~~~~----g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKT----GSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred EEEEcCC----CCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9985432 2356999999887766665432 344567889899988665432 3479999998766544433 333
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
....++ .+++.+|+++.... ..|+.++..++
T Consensus 333 ~~~~~~-----SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 333 NQDADV-----SSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred ccCEEE-----CCCCCEEEEEEccCCCceEEEEECCCC
Confidence 334555 34667787766433 45778887766
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.08 Score=58.12 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=116.3
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEEEe
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKILV 1127 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~~~ 1127 (1332)
.|....++++|++|...| |+.+++.+.+....+-.-+. +...|.++. ++.+|++|...+ +.+.++.. +.+++ .
T Consensus 90 ~Dv~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddg-fLivdvsdpssP~l-a 164 (370)
T COG5276 90 ADVRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDG-FLIVDVSDPSSPQL-A 164 (370)
T ss_pred heeEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCc-EEEEECCCCCCcee-e
Confidence 345667889999996665 77777776555544433333 455666666 999999997554 34566643 33332 2
Q ss_pred cCCC----CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1128 NDLM----EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1128 ~~~~----~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.... .-..++|+.. +-|.+.+++ -+..++.......+++..--..|.--++....++.|.++..++
T Consensus 165 grya~~~~d~~~v~ISGn--~AYvA~~d~-------GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg- 234 (370)
T COG5276 165 GRYALPGGDTHDVAISGN--YAYVAWRDG-------GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG- 234 (370)
T ss_pred eeeccCCCCceeEEEecC--eEEEEEeCC-------CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-
Confidence 2212 2357888754 888887765 3666666555555555432233444566667889999997765
Q ss_pred EEEEecCCCc-eEEEEe--ecccceE---EEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1204 IEYCDFFGRS-RKIVIS--KVAPYGL---SVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1204 I~~~d~dG~~-~~~~~~--~~~P~gl---av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.-.|.+|.. .+++-+ ...|.++ .| .+.+.|++|-..+ +-.++..+
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~V-------s~~~~Yvadga~g-l~~idisn 286 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPV-------SGEYAYVADGAKG-LPIIDISN 286 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceec-------ccceeeeeccccC-ceeEeccC
Confidence 6666887765 333333 7778777 88 8999999995443 34444433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.037 Score=67.66 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=108.5
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.....+.. ........++.+.++.|+++... ...|.+.++++..+..+..........+++|...+|
T Consensus 177 ~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 45555543 444444332 22234456777778888776543 346888999865554443222334578899987788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++-... ....|+++++++...+.+... -......++.+++++|+++.. +...|+.++++|...+.+.. ...
T Consensus 255 a~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 255 AVALSRD----GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEccC----CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 8864332 246899999988776555432 223345678889998887643 24468888887665433332 222
Q ss_pred cceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
....++ ++++.+|+++....+ .|+.++..++
T Consensus 330 ~~~~~~-----SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 330 NTSPRI-----SPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred cCceEE-----CCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 223445 336778887765433 6888887666
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00015 Score=56.77 Aligned_cols=37 Identities=32% Similarity=0.948 Sum_probs=31.9
Q ss_pred cccCC--CCcce--eeeccCCCceEEeCCCCceecCCCCCc
Q psy5806 393 QSHCA--PKVCS--HICLPNKHRFTCQCPLGLTLSPDNKSC 429 (1332)
Q Consensus 393 ~n~C~--~g~Cs--hlCl~~~~~~~C~C~~G~~L~~d~~tC 429 (1332)
+|||+ ...|. +.|+|+.|+|+|.|+.||++..++++|
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 58898 45686 899999999999999999988877766
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.048 Score=66.80 Aligned_cols=178 Identities=14% Similarity=-0.017 Sum_probs=108.7
Q ss_pred EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEE
Q psy5806 1069 LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Ly 1146 (1332)
|..++.+ |.....+.. ........++.+.++.|+++... ...|.+.++++...+.+..........+++|...+|+
T Consensus 181 l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 5555544 444434332 22234556777778888765433 3468888998655554432222334678899777888
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-eccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVAP 1223 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P 1223 (1332)
++.... ....|+..++++...+.+... -......++++++++||++... ...|+.+++++...+.+.. ....
T Consensus 259 ~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 259 FVLSKD----GNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred EEEccC----CCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 775432 236799999998776655432 2334456788888988887543 3469998987665444332 2222
Q ss_pred ceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
...++ ++++++|+++....+ .|+.++..++
T Consensus 334 ~~~~~-----Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 334 ARPRL-----SADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred cceEE-----CCCCCEEEEEEccCCceEEEEEECCCC
Confidence 22334 346788988875443 6888888776
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.11 Score=63.58 Aligned_cols=182 Identities=9% Similarity=0.070 Sum_probs=113.9
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCc--eEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMH--TINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~--~I~v~~ldG~~ 1122 (1332)
...+.|++++++|+++.... ..|+..++..| ..+.+. ...+....+++.+.++.|+++....+ .|..+++++..
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-~~~~l~-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG-ARKVVA-SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCC-ceEEEe-cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 56788999999998876433 46998898733 223332 22223345788888888988743333 46666777655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
...+..........+.+|...+|+++.... ....|++++.++.....+ ... . ...++.++++.|+++.. +
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~--~ 353 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRS----GSPQVYRMSASGGGASLV-GGR-G--YSAQISADGKTLVMING--D 353 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcC--C
Confidence 444544434456788999777787774321 247899999988766544 221 2 24678888999988754 5
Q ss_pred eEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC
Q psy5806 1203 RIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
.|...|+.+...+.+.....-.++++ .+.+.+|+++..
T Consensus 354 ~i~~~Dl~~g~~~~lt~~~~~~~~~~-----sPdG~~i~~~s~ 391 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSSTFLDESPSI-----SPNGIMIIYSST 391 (429)
T ss_pred CEEEEECCCCCeEEecCCCCCCCceE-----CCCCCEEEEEEc
Confidence 68888887654443332111233444 346777777765
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.049 Score=66.38 Aligned_cols=179 Identities=13% Similarity=-0.004 Sum_probs=110.7
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC--ceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM--HTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~--~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+..+.+ |...+.+.. ........++.+.++.|+|+.... ..|.+.++++.....+........+++++|....|
T Consensus 171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 45655544 444444442 222234556777788888876443 57888888754443333222344568899977778
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
|++.... ....|+..++++...+.+.... ......++.+++++|+++... ...|+.+++++...+.+.. ...
T Consensus 249 ~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKD----GNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred EEEECCC----CCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 8875432 2467999999877665554321 222345677788888876543 3479999998766544443 444
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
...+++ ++.+.+|+++.... ..|+.++..++
T Consensus 324 ~~~~~~-----spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 324 NASPSW-----SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred ccCeEE-----CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 445555 33677888888643 37888887665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.071 Score=62.74 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=78.5
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCC------eEEEEECCCCC----------------------CceeEe-----ecCC
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSG------NLRTFDMSDST----------------------RIKPIP-----LMND 1088 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~------~I~~~~l~~g~----------------------~~~~i~-----~~~~ 1088 (1332)
.+++|+.|+++++..++||.++-... .|.++. . |. ....+. -...
T Consensus 236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~-~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h 313 (399)
T COG2133 236 YGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIR-P-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPH 313 (399)
T ss_pred eccCCccceeecCCCCcEEEEecCCCcccCcccccccc-c-CCccCCceeccCcccCccccCCCcccccccCCceeeccc
Confidence 47899999999999999999985441 222221 1 11 000000 0011
Q ss_pred CCceeeEEEecC------CeEEEEcCCCceEEEEeeCCceEEE----Eec-CCCCceEEEEcCCCcEEEEEecCCCCCCC
Q psy5806 1089 TIRDNFVIDWVA------NNIYYIDSQMHTINVARSDGQHKKI----LVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157 (1332)
Q Consensus 1089 ~~p~glAvDw~~------~~LY~td~~~~~I~v~~ldG~~~~~----~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~ 1157 (1332)
-.|.||||-.-. +.||++.-....+...+.+|..+.+ +.. ...+|++|++.| .|.||+++...
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-DGallv~~D~~----- 387 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-DGALLVLTDQG----- 387 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC-CCeEEEeecCC-----
Confidence 256899987322 6899987776667778888884433 332 225899999999 78888887653
Q ss_pred CCcEEEEecCC
Q psy5806 1158 TTKIEKVYLDG 1168 (1332)
Q Consensus 1158 ~~~I~r~~ldG 1168 (1332)
..+|+|+..++
T Consensus 388 ~g~i~Rv~~~~ 398 (399)
T COG2133 388 DGRILRVSYAG 398 (399)
T ss_pred CCeEEEecCCC
Confidence 36899998765
|
|
| >KOG2397|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00043 Score=80.46 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=62.4
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC----CEEEeeeecCCCCCCCCCCCc
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG----HCILKTWLCDGIPDCSLGEDE 90 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE 90 (1332)
-....|+|.+...=|+...+=|..-||.|||||.+ ...|+.+.|+|.|. .=|+.+.+=||..||=|||||
T Consensus 40 ~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG------tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE 113 (480)
T KOG2397|consen 40 DASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPG------TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDE 113 (480)
T ss_pred ccccceeeccCCcccCHHHhccccccCCCCCCCCc------cccCCCCceeeeecCCCceeeechhccCcccccccCCCC
Confidence 34558999966789999999999999999999953 46799999999863 488999999999999999999
Q ss_pred cc
Q psy5806 91 RN 92 (1332)
Q Consensus 91 ~~ 92 (1332)
..
T Consensus 114 ~~ 115 (480)
T KOG2397|consen 114 YL 115 (480)
T ss_pred cc
Confidence 64
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.29 Score=54.59 Aligned_cols=196 Identities=9% Similarity=0.009 Sum_probs=116.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+.++++++.++.|+.+. ..+.|...++.++..... ..........+++...++.|+.+. ..+.|.++++... ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECVR 87 (289)
T ss_pred CEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEE-EecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccceE
Confidence 356888988877777665 577888888764332222 212222334666665555665554 4678999999853 333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.+......+..++++|. +.++++.... +.|...++........+......+..++++++++.|+.. ...+.|
T Consensus 88 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i 159 (289)
T cd00200 88 TLTGHTSYVSSVAFSPD-GRILSSSSRD------KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTI 159 (289)
T ss_pred EEeccCCcEEEEEEcCC-CCEEEEecCC------CeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcE
Confidence 34333346888999996 5555554322 467777776333333333223456788888775555544 356789
Q ss_pred EEEecCCCc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1205 EYCDFFGRS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...|+.... ...+.. ......+++ .+.+..|+.+.. .+.|...+..++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAF-----SPDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred EEEEccccccceeEecCccccceEEE-----CCCcCEEEEecC-CCcEEEEECCCC
Confidence 998887433 222222 445677777 222335665554 778888887655
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.17 Score=56.91 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCC-------------------CE
Q psy5806 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEA-------------------MS 1249 (1332)
Q Consensus 1190 ~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~-------------------~~ 1249 (1332)
-+++||++|..+++|.++|.+....+++.. ...|.||+. .++++++.-+.. =.
T Consensus 211 hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f-------~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 211 YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAF-------AGDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccce-------eCCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 368899999999999999998555566676 889999999 888888876422 23
Q ss_pred EEEEEecCCCCcceEEEEec--CCCCeeeEEEEeCCCC
Q psy5806 1250 VVIAREKSDTGQWDVHLIRS--NQEDFLNIKAISASKQ 1285 (1332)
Q Consensus 1250 V~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~~~~~~q 1285 (1332)
|..+|+.+| ..++.++- .+..+.++.+....++
T Consensus 284 v~vidl~tG---~vv~~l~feg~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 284 VAVIDLNSG---DVVHWLRFEGVIEEIYDVAVLPGVRR 318 (335)
T ss_pred EEEEECCCC---CEEEEEEeCCceeEEEEEEEecCCCC
Confidence 677888888 66666653 4567778877766554
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=1.3 Score=52.38 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=123.4
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+++.+++..+.+..||-.+ ..|.|..-++..|...............+|+.. .++.|| +-...+.+.+.++.+..-
T Consensus 320 nK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~-t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 320 NKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELF-TIGWDDTLRVISLKDNGY 396 (603)
T ss_pred ccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeec-CCCcEE-EEecCCeEEEEecccCcc
Confidence 45778999999988777665 788898888665554444333334467899988 346665 445567888888854322
Q ss_pred EE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1124 KI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1124 ~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.- +..--.+|.++|+.+..+.+..+-... |.... +.+.. ..+.. -..|.++|+.+++..+-+- ...
T Consensus 397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~--------iv~l~-~~~~~-~~~~~-~y~~s~vAv~~~~~~vaVG-G~D 464 (603)
T KOG0318|consen 397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISD--------IVLLQ-DQTKV-SSIPI-GYESSAVAVSPDGSEVAVG-GQD 464 (603)
T ss_pred cccceeecCCCceeEEEcCCCCEEEEEecCc--------EEEEe-cCCcc-eeecc-ccccceEEEcCCCCEEEEe-ccc
Confidence 11 222236899999999777888887654 43332 12121 12222 2567899999877766554 456
Q ss_pred CeEEEEecCCCceEEE---Ee-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1202 KRIEYCDFFGRSRKIV---IS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~---~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++|..+.+.|...... .. ...+..|++ ++++.+|-.+| .+++|...+..+.
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~iT~vay-----Spd~~yla~~D-a~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAAITDVAY-----SPDGAYLAAGD-ASRKVVLYDVASR 519 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCCceEEEE-----CCCCcEEEEec-cCCcEEEEEcccC
Confidence 7799999988653222 22 566677777 55666777777 4456666665554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=1.3 Score=51.77 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred eEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCC
Q psy5806 1102 NIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAF 1181 (1332)
Q Consensus 1102 ~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~ 1181 (1332)
.+-+.......+.+.+.+|...+.+..++....+++|+|...++-.++.. -.|+.++++..+.+.+-.+.-..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr-------~el~vididngnv~~idkS~~~l 445 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR-------FELWVIDIDNGNVRLIDKSEYGL 445 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc-------eEEEEEEecCCCeeEecccccce
Confidence 44455666778999999999888888899999999999965667777643 36999999998888776655556
Q ss_pred cceEEEecCCCEEEEEEcC---CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC
Q psy5806 1182 PNELAIDFKQRRLFWADST---NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~---~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
..++++.+..+.|=++-.. +..|..+|++|...-.+.. ..+-++=|+ |+++.+||+...
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF-----D~d~ryLYfLs~ 508 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF-----DPDGRYLYFLSA 508 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc-----CCCCcEEEEEec
Confidence 6677777777666555432 5678888888865444433 666677777 778999999864
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.09 Score=64.36 Aligned_cols=175 Identities=12% Similarity=0.014 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
+|...+.+ |.+...+. .+.......++.+.++.|+++... ...|.+.++.+..++.+......-..++++|...+|
T Consensus 185 ~i~i~d~d-g~~~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 185 EVRVADYD-GFNQFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEECCC-CCCceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 45555654 55544433 233345678888888888876433 347888898865444433221223468899977788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEeeccc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVISKVAP 1223 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~~~~P 1223 (1332)
+++.... +...|+..++++.....+... -......++.+++++|+++-. +.-.|+.++.+|...+.+-...
T Consensus 263 a~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 263 AFASSKD----GVLNIYVMGANGGTPSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEecC----CcEEEEEEECCCCCeEeeccC-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 8875322 135699999988776665442 233456888999998887743 3446788787776554432121
Q ss_pred ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+++ .+++.+|+++.. ..|.+++..+|
T Consensus 336 ~~~~~-----SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 336 YSAQI-----SADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CCccC-----CCCCCEEEEEcC--CCEEEEECCCC
Confidence 23344 346777877754 56777888776
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.037 Score=65.10 Aligned_cols=183 Identities=9% Similarity=0.005 Sum_probs=111.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCC-------------CeEEEEECC------CCCCceeEeecCCCCceeeEEEecCCeEE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRS-------------GNLRTFDMS------DSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~-------------~~I~~~~l~------~g~~~~~i~~~~~~~p~glAvDw~~~~LY 1104 (1332)
.++-..|.|++.+ +||++-... ++|.+++.. +......+.+.+..+|.||++++.++.||
T Consensus 176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 4556789999998 999985333 444444322 22233557778999999999999999999
Q ss_pred EEcCCCceEEEEeeCCceEEEEecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----
Q psy5806 1105 YIDSQMHTINVARSDGQHKKILVND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----- 1177 (1332)
Q Consensus 1105 ~td~~~~~I~v~~ldG~~~~~~~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----- 1177 (1332)
.++.+...+ +-+.....+..+ ...| +.||-.... ++ ...++.....+...
T Consensus 255 ~~e~g~d~~----~~~Deln~i~~G~nYGWP----------~~~~G~~~~------g~---~~~~~~~~~~~~~p~~~~~ 311 (399)
T COG2133 255 TTEHGPDAL----RGPDELNSIRPGKNYGWP----------YAYFGQNYD------GR---AIPDGTVVAGAIQPVYTWA 311 (399)
T ss_pred EEecCCCcc----cCcccccccccCCccCCc----------eeccCcccC------cc---ccCCCcccccccCCceeec
Confidence 998877555 111111112111 1112 122211000 11 11112222111111
Q ss_pred CCCCcceEEEecCC------CEEEEEEcCCCeEEEEecCCCceEEEEe------ecccceEEEecCCccccccEEEEEEC
Q psy5806 1178 DLAFPNELAIDFKQ------RRLFWADSTNKRIEYCDFFGRSRKIVIS------KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1178 ~l~~p~glaiD~~~------~~LY~~d~~~~~I~~~d~dG~~~~~~~~------~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
.-..|.||++-.-+ +.||++.-..-.+.+.+.+|..+.++.. ...|.++++ +.+|.||+++-
T Consensus 312 ~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v------~~DGallv~~D 385 (399)
T COG2133 312 PHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAV------APDGALLVLTD 385 (399)
T ss_pred cccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEE------CCCCeEEEeec
Confidence 11346788876322 6899988777778888999885554443 369999999 67889999887
Q ss_pred C-CCEEEEEEec
Q psy5806 1246 E-AMSVVIAREK 1256 (1332)
Q Consensus 1246 ~-~~~V~~~~~~ 1256 (1332)
. +++|+|+...
T Consensus 386 ~~~g~i~Rv~~~ 397 (399)
T COG2133 386 QGDGRILRVSYA 397 (399)
T ss_pred CCCCeEEEecCC
Confidence 6 7799998754
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.29 Score=57.37 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=86.4
Q ss_pred EEEcCC--CceEEEEeeCCce--EEE-------EecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEEEec--CC
Q psy5806 1104 YYIDSQ--MHTINVARSDGQH--KKI-------LVNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEKVYL--DG 1168 (1332)
Q Consensus 1104 Y~td~~--~~~I~v~~ldG~~--~~~-------~~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r~~l--dG 1168 (1332)
..++.. .++|.++.+++.. .+. +.+++..|+|+++ +|..|.+|..-.+. .+.+....| ++
T Consensus 118 vas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k-----~G~~~Qy~L~~~~ 192 (381)
T PF02333_consen 118 VASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK-----DGRVEQYELTDDG 192 (381)
T ss_dssp EEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET-----TSEEEEEEEEE-T
T ss_pred EEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecC-----CceEEEEEEEeCC
Confidence 445654 3678888887432 111 2345667999998 46667666554332 244555555 33
Q ss_pred Cc--eEEEEec--CCCCcceEEEecCCCEEEEEEcCCCeEEEEecC---CCceEEEEe------ecccceEEEecCCccc
Q psy5806 1169 SY--RTVLVEE--DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF---GRSRKIVIS------KVAPYGLSVRQSPGKA 1235 (1332)
Q Consensus 1169 ~~--~~~l~~~--~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d---G~~~~~~~~------~~~P~glav~~~~~~~ 1235 (1332)
.. .-.++.+ --..|.|+++|.+.++||+++... -|++++.+ +..++.+.. .....||++. +..+
T Consensus 193 ~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly--~~~~ 269 (381)
T PF02333_consen 193 DGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALY--YGSD 269 (381)
T ss_dssp TSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEE--E-CC
T ss_pred CCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEE--ecCC
Confidence 32 2223221 135799999999999999999664 69999987 334555533 3467899991 1112
Q ss_pred cccEEEEEECCCCEEEEEEecCC
Q psy5806 1236 FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1236 ~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
-.+||.+++.++++...++..+.
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCeEEEEEcCCCCeEEEEecCCC
Confidence 25899999999999988887653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.46 Score=52.45 Aligned_cols=218 Identities=15% Similarity=0.157 Sum_probs=126.5
Q ss_pred cceEEEEee-cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec--CC
Q psy5806 1012 REFLLYTSR-FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM--ND 1088 (1332)
Q Consensus 1012 ~~~ll~~~~-~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~--~~ 1088 (1332)
+++..++.- .. ++-+++..++.....-.. .+. -.+--++..++..|++|...+ ...+++.+.+.......- ..
T Consensus 96 e~yvyvad~ssG-L~IvDIS~P~sP~~~~~l-nt~-gyaygv~vsGn~aYVadlddg-fLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 96 EEYVYVADWSSG-LRIVDISTPDSPTLIGFL-NTD-GYAYGVYVSGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred ccEEEEEcCCCc-eEEEeccCCCCcceeccc-cCC-ceEEEEEecCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCC
Confidence 567766653 34 777777655433211111 110 122223667899999998665 455677765555443321 12
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEecCCC--CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVNDLM--EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~~~--~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
+..+.+|+. ++.-|++....+ +.+.++...+ ++.+..-.- ..+++-+.+ .+.|.++.++ -+..++
T Consensus 172 ~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~e-------gvlivd 239 (370)
T COG5276 172 GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDE-------GVLIVD 239 (370)
T ss_pred CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEccc-------ceEEEe
Confidence 234678888 999999987654 4456665333 332322111 345555555 4888888665 366667
Q ss_pred cCCCceEEEEe-cCCCCcceE-EEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-----ecccceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVE-EDLAFPNEL-AIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-----KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~-~~l~~p~gl-aiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-----~~~P~glav~~~~~~~~~~ 1238 (1332)
.+|.....++. -+-..|.++ ++-..+++.|++|...+ +.-+|.....-..+.+ +....||.+ +++
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~a-------y~~ 311 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRA-------YGN 311 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEE-------ecC
Confidence 77765444432 223445555 23336899999986543 4444443222122222 557789999 999
Q ss_pred EEEEEECCCCEEEEE
Q psy5806 1239 ELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~ 1253 (1332)
++|++|.+++.|.-+
T Consensus 312 y~yiadkn~g~vV~~ 326 (370)
T COG5276 312 YNYIADKNTGAVVDA 326 (370)
T ss_pred eeEeccCCceEEEeC
Confidence 999999988877644
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.45 Score=53.14 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=102.9
Q ss_pred CCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCC--CCcccccCC--ccc-eEEEEEe--CCCcEE
Q psy5806 987 PTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADL--LPVTLPFPE--YMS-SIFFDYH--YSKNLI 1059 (1332)
Q Consensus 987 p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~--~~~~~pi~~--~~~-~~~id~d--~~~~~l 1059 (1332)
|.+-+--|..+|.+...+++ .+..||..+.... |..-...-... .....-+.. ... -.|+++- ...+.|
T Consensus 79 PTGiVfN~~~~F~vt~~g~~---~~a~Fif~tEdGT-isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L 154 (336)
T TIGR03118 79 PTGQVFNGSDTFVVSGEGIT---GPSRFLFVTEDGT-LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL 154 (336)
T ss_pred ccEEEEeCCCceEEcCCCcc---cceeEEEEeCCce-EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE
Confidence 34444445566766554443 1345655555554 55433211111 010111111 111 2355554 447899
Q ss_pred EEEeCCCCeEEEEECCCCCCceeEee-----c---CCCCceeeEEEecCCeEEEEc----C---------CCceEEEEee
Q psy5806 1060 YFADMRSGNLRTFDMSDSTRIKPIPL-----M---NDTIRDNFVIDWVANNIYYID----S---------QMHTINVARS 1118 (1332)
Q Consensus 1060 Y~sd~~~~~I~~~~l~~g~~~~~i~~-----~---~~~~p~glAvDw~~~~LY~td----~---------~~~~I~v~~l 1118 (1332)
|-+|..+++|-.++ ++...+... . ..-.|.+|.- ++++|||+- . ..+-|.++++
T Consensus 155 YaadF~~g~IDVFd---~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 155 YAANFRQGRIDVFK---GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL 229 (336)
T ss_pred EEeccCCCceEEec---CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcC
Confidence 99999999998876 444332221 0 1125667755 499999982 1 2357999999
Q ss_pred CCceEEEEe--cCCCCceEEEEcCC-----CcEEEEEecCCCCCCCCCcEEEEecC-CCceEEE
Q psy5806 1119 DGQHKKILV--NDLMEPLAIAVYPR-----RGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVL 1174 (1332)
Q Consensus 1119 dG~~~~~~~--~~~~~P~~iavdp~-----~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l 1174 (1332)
+|...+.+. ..++.|.+||+.|. .|.|.+-+.|. ++|-..+.. |...-.|
T Consensus 230 ~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGD------G~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 230 NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGD------GTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCC------ceeEEecCCCCceeeee
Confidence 999877643 36899999999884 67888998886 789988874 5543333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2397|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.002 Score=75.11 Aligned_cols=72 Identities=24% Similarity=0.415 Sum_probs=57.4
Q ss_pred CCEEecCC-CEEEeeeecCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCcc
Q psy5806 62 DEHRCTTG-HCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKY 140 (1332)
Q Consensus 62 ~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~ 140 (1332)
..|.|.+| .-|+..++-|+.-||.|||||.+-. .|+.+ .|+|.+... ...=|+...
T Consensus 43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGts-ACpng-kF~C~N~G~---------------------~p~~i~ssr 99 (480)
T KOG2397|consen 43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTS-ACPNG-KFYCVNQGH---------------------QPKYIPSSR 99 (480)
T ss_pred cceeeccCCcccCHHHhccccccCCCCCCCCccc-cCCCC-ceeeeecCC---------------------Cceeeechh
Confidence 48999987 5899999999999999999995522 27766 999998421 234567778
Q ss_pred ccCCCCCCCCCCCCCC
Q psy5806 141 LCDGKKHCPRGEEGPD 156 (1332)
Q Consensus 141 ~Cdg~~dC~dg~de~d 156 (1332)
|=||+.||-||+||.+
T Consensus 100 V~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 100 VNDGICDCCDGSDEYL 115 (480)
T ss_pred ccCcccccccCCCCcc
Confidence 8899999999999954
|
|
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0019 Score=43.27 Aligned_cols=21 Identities=38% Similarity=0.961 Sum_probs=19.6
Q ss_pred CceeeCCCCccccCCCCcccc
Q psy5806 684 GIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 684 ~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
+|+|.|+.||+|.+|+++|..
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred CEEeeCCCCCcCCCCCCcccc
Confidence 589999999999999999985
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.37 Score=58.84 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=112.0
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC--eEEEE--ECCCC--CCceeEeecCCCCceeeEEE
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG--NLRTF--DMSDS--TRIKPIPLMNDTIRDNFVID 1097 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~--~I~~~--~l~~g--~~~~~i~~~~~~~p~glAvD 1097 (1332)
|..++++...... +...++ ......+++++++|.|+....+ .|+.. ++..+ .....+.....+.....++.
T Consensus 213 I~~~~l~~g~~~~-lt~~~g--~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 213 IFLGSLENPAGKK-ILALQG--NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred EEEEECCCCCceE-eecCCC--CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 6666665443221 112222 2345688999989988764322 45553 44432 12233332222333456888
Q ss_pred ecCCeEEEEcCC--CceEEEEeeCC--ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE
Q psy5806 1098 WVANNIYYIDSQ--MHTINVARSDG--QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV 1173 (1332)
Q Consensus 1098 w~~~~LY~td~~--~~~I~v~~ldG--~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~ 1173 (1332)
+.++.|+++... ...|.++++++ ...+.+..........+.+|...+|+++.... ....|+..++++...+.
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDYQ 365 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeEE
Confidence 888888776432 33577777763 22333433323446678999888888875432 23579999998888776
Q ss_pred EEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEE
Q psy5806 1174 LVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1174 l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~ 1218 (1332)
+... .......++.++++.||++... ...|+.++++|...+.+.
T Consensus 366 Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 366 LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 6543 2344567888889999887543 456888898877655444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.083 Score=65.02 Aligned_cols=150 Identities=11% Similarity=-0.021 Sum_probs=96.5
Q ss_pred CCceeeEEEecCCeEEEEcCC---CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ---MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~---~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
++|.++++++.++.+|++.++ ...+..++..-....++ ++-++.-++.+...+.|+. . ++|-.++
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv---fni~~iea~vkdGK~~~V~---g------n~V~VID 302 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV---FNIARIEEAVKAGKFKTIG---G------SKVPVVD 302 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE---EchHHHHHhhhCCCEEEEC---C------CEEEEEE
Confidence 389999999999999999743 23343333321111111 0111111222223344442 2 3566665
Q ss_pred cCC-----CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc---------eEEEEe----ecccceEE
Q psy5806 1166 LDG-----SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS---------RKIVIS----KVAPYGLS 1227 (1332)
Q Consensus 1166 ldG-----~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~---------~~~~~~----~~~P~gla 1227 (1332)
... ......+..+ ..|.|++++++++.||.+...++.+..+|..-.. |.+++. +..|...+
T Consensus 303 ~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTa 381 (635)
T PRK02888 303 GRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTA 381 (635)
T ss_pred CCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEE
Confidence 433 3334445544 6799999999999999999999999999996422 333433 88999999
Q ss_pred EecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+ +..|+.|.|-.-...|.+.|...
T Consensus 382 F------Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 382 F------DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred E------CCCCCEEEeEeecceeEEEehHH
Confidence 9 44568999999889999998764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=2.2 Score=52.95 Aligned_cols=233 Identities=9% Similarity=-0.049 Sum_probs=121.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC------ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR------IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~------~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
.+.+++|++.++.+..+-...++|...++..+.. ....+......+..|++.+.+.++.++-...+.|.++++.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 4679999985444555555788898888764321 1111112233567788887777777777778899999997
Q ss_pred C-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC-CCcceEEEecCCCEEEEE
Q psy5806 1120 G-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL-AFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1120 G-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l-~~p~glaiD~~~~~LY~~ 1197 (1332)
. +....+..-.....+|+.+| .|.++.+-... ..|...++.......-+...- .....+...+..+.|.-+
T Consensus 157 tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~D------g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKD------KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCC------CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 4 43333433335678999999 55665654433 456666664333221121110 111223333344444432
Q ss_pred E---cCCCeEEEEecCCCc-eEEEEe--ecccceE-EEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1198 D---STNKRIEYCDFFGRS-RKIVIS--KVAPYGL-SVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1198 d---~~~~~I~~~d~dG~~-~~~~~~--~~~P~gl-av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
- ...+.|...|+.... ...... ......+ .+ +..+..||.+-.+.+.|...+..++ .........
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-----d~d~~~L~lggkgDg~Iriwdl~~~---~~~~~~~~~ 301 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-----DEDTNLLYIGSKGEGNIRCFELMNE---RLTFCSSYS 301 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-----cCCCCEEEEEEeCCCeEEEEEeeCC---ceEEEeecc
Confidence 1 123556666664221 111111 1111111 22 2245567776666788888888776 433333222
Q ss_pred CCCeeeEEEEeCCCCCCCCCCCC
Q psy5806 1271 QEDFLNIKAISASKQLTWNPCAQ 1293 (1332)
Q Consensus 1271 ~~~~~~i~~~~~~~q~~~n~C~~ 1293 (1332)
...+..-..+.+.+..-.+-|+.
T Consensus 302 s~~~~~g~~~~pk~~~dv~~~Ei 324 (493)
T PTZ00421 302 SVEPHKGLCMMPKWSLDTRKCEI 324 (493)
T ss_pred CCCCCcceEecccccccccceee
Confidence 33333333344434344455553
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0024 Score=50.00 Aligned_cols=39 Identities=26% Similarity=0.816 Sum_probs=33.0
Q ss_pred CCcccCCCCCCc--cccccCCCCccccCCCCeeEccCCccc
Q psy5806 969 PNACGSNNGGCS--HLCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 969 ~n~C~~~nGgCs--hlCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
.|+|+.....|. +.|++++++|.|.|+.||.+..++++|
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 467877777786 899999999999999999987777766
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=2.9 Score=46.79 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=115.4
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAI 1136 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~i 1136 (1332)
.-||-+...+.+|+-++|.+-.-.+.+. -.-.....|++.+++ ..|.+.+....|+.+++.-..-..+.. +..+--.
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~~~pi~ 146 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-LSGRPIA 146 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe-cCCCcce
Confidence 3444444456788888876322222221 112367899999876 788888888899999998443333222 2355668
Q ss_pred EEcCCCcEEEEEecCCCCCCCCCcEEEEec--C-CCceEEE-Ee-cCCCCcceEEEecCCCEEEEEEcCCCeEEEEec-C
Q psy5806 1137 AVYPRRGLLFYSHWGLYDNSPTTKIEKVYL--D-GSYRTVL-VE-EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF-F 1210 (1332)
Q Consensus 1137 avdp~~g~Lywtd~~~~~~~~~~~I~r~~l--d-G~~~~~l-~~-~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~-d 1210 (1332)
|+|| .|.+|-+..+. ..|.-.++ - ..--+.+ +. +....-+.|.+.++++-|.++.. .+.|..+|. +
T Consensus 147 AfDp-~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~ 218 (311)
T KOG1446|consen 147 AFDP-EGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD 218 (311)
T ss_pred eECC-CCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC
Confidence 9999 78888776654 35555554 2 2222222 22 22344467888888888888754 445666654 6
Q ss_pred CCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1211 GRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1211 G~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
|.-...+-. +.-|.+-+. . -++....+-...++|...+..+| ..+...+.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~f-----t-Pds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~ 272 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATF-----T-PDSKFVLSGSDDGTIHVWNLETG---KKVAVLRG 272 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEE-----C-CCCcEEEEecCCCcEEEEEcCCC---cEeeEecC
Confidence 764333332 333433333 1 24444555668899999999998 65555554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.7 Score=48.00 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=102.2
Q ss_pred CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc-ee-eEEEecCCeEEEEcCCCceEEEEe-eCCceEEEE-ecC-
Q psy5806 1055 SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR-DN-FVIDWVANNIYYIDSQMHTINVAR-SDGQHKKIL-VND- 1129 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p-~g-lAvDw~~~~LY~td~~~~~I~v~~-ldG~~~~~~-~~~- 1129 (1332)
.+++||..+ ..+.|+.+++.+|....... ...+ .. .+++ ++.||+..... .|..++ .+|+..-.. ...
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~---~~~~~~~~~~~~--~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFD---LPGPISGAPVVD--GGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEE---CSSCGGSGEEEE--TTEEEEEETTS-EEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEee---ccccccceeeec--cccccccccee-eeEecccCCcceeeeeccccc
Confidence 456788885 77788888876554332222 2222 11 3555 88999887444 888888 457754432 111
Q ss_pred ----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEEecCCCCcc-------------eEEEecCC
Q psy5806 1130 ----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLVEEDLAFPN-------------ELAIDFKQ 1191 (1332)
Q Consensus 1130 ----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~~~~l~~p~-------------glaiD~~~ 1191 (1332)
...+...+++ ++.+|..... ..|..+++. |...-.. .+..|. .+.+ .+
T Consensus 108 ~~~~~~~~~~~~~~--~~~~~~~~~~-------g~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~--~~ 173 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD--GDRLYVGTSS-------GKLVALDPKTGKLLWKY---PVGEPRGSSPISSFSDINGSPVI--SD 173 (238)
T ss_dssp CTCSTB--SEEEEE--TTEEEEEETC-------SEEEEEETTTTEEEEEE---ESSTT-SS--EEEETTEEEEEEC--CT
T ss_pred cccccccccCceEe--cCEEEEEecc-------CcEEEEecCCCcEEEEe---ecCCCCCCcceeeecccccceEE--EC
Confidence 2234445555 5677777743 358888864 4332222 122221 2233 35
Q ss_pred CEEEEEEcCCCeEEEEecCCCceEEEEeecccce-EEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYG-LSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~g-lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++||.+... +++..+|.....+.--.....+.+ +.. .++.||+++ ..+.|+.+|+.+|
T Consensus 174 ~~v~~~~~~-g~~~~~d~~tg~~~w~~~~~~~~~~~~~-------~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 174 GRVYVSSGD-GRVVAVDLATGEKLWSKPISGIYSLPSV-------DGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp TEEEEECCT-SSEEEEETTTTEEEEEECSS-ECECEEC-------CCTEEEEEE-TTTEEEEEETTTT
T ss_pred CEEEEEcCC-CeEEEEECCCCCEEEEecCCCccCCcee-------eCCEEEEEe-CCCEEEEEECCCC
Confidence 599998654 446666776554332111444555 556 899999999 8899999999998
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.8 Score=49.84 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCccc--ccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTL--PFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~--pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
..|+++.+-.. ..+|++-+....+++. ++|+ =.+.|-..++. |.+=-..|++..+.|+..... ....+..-
T Consensus 106 gk~~~V~N~TP-a~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F 178 (342)
T PF06433_consen 106 GKFLYVQNFTP-ATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKE-AQKSTKVF 178 (342)
T ss_dssp SSEEEEEEESS-SEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTE-EEEEETTSCEEEEEETSTSSE-EEEEEEES
T ss_pred CcEEEEEccCC-CCeEEEEECCCCceeeeecCCC----EEEEEecCCCc-eEEEecCCceEEEEECCCCCE-eEeecccc
Confidence 56777776554 4455544343444333 2332 12234333444 556668899999998842222 22111111
Q ss_pred Cc------eeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE--ecC--------CCCceE---EEEcCCCcEEEEEec
Q psy5806 1090 IR------DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL--VND--------LMEPLA---IAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1090 ~p------~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~--~~~--------~~~P~~---iavdp~~g~Lywtd~ 1150 (1332)
.| +.=+++..++++||... .+.|..+++.|...+.. ++- -=+|-| +|+++..++||+..-
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred CCCCcccccccceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 11 22344556778999776 46888899988765442 110 012433 999999999999852
Q ss_pred CCC-C--CCCCCcEEEEecCCCceEEEEecCCCC-cceEEEecCCC-EEEEEEcCCCeEEEEecC-CCceEEEEe
Q psy5806 1151 GLY-D--NSPTTKIEKVYLDGSYRTVLVEEDLAF-PNELAIDFKQR-RLFWADSTNKRIEYCDFF-GRSRKIVIS 1219 (1332)
Q Consensus 1151 ~~~-~--~~~~~~I~r~~ldG~~~~~l~~~~l~~-p~glaiD~~~~-~LY~~d~~~~~I~~~d~d-G~~~~~~~~ 1219 (1332)
.+. . ..+...|+.+++.-..|..-+. +.. ...|+|..+.+ +||-++..++.|..+|.. |+..+.+-.
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 221 1 1134568988887777665554 223 33788877554 677677777888888875 444444333
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.014 Score=41.17 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
..|.|||+| ..++||++|.++++|.++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 479999999 799999999999999764
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.016 Score=40.90 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=24.8
Q ss_pred CCCcceEEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1179 LAFPNELAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1179 l~~p~glaiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
+..|.||++| .++.||++|.++++|..+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3679999999 889999999999999863
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=9.7 Score=47.91 Aligned_cols=233 Identities=8% Similarity=-0.046 Sum_probs=120.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ce------eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IK------PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~------~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
.+..++|++.++.+..+-...++|+..++..+.. .. ..+.........+++.+.+.++.++-...+.|.++++
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 4679999987555666666788998888764321 11 1122223457789999888888777666789999999
Q ss_pred CCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEE-----ecCCC
Q psy5806 1119 DGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAI-----DFKQR 1192 (1332)
Q Consensus 1119 dG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glai-----D~~~~ 1192 (1332)
.... ...+. ......+|+++|. |.++.+.... ..|...++.......-+...-.......+ ..+++
T Consensus 156 ~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s~D------~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 156 ENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTCVG------KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred CCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEecC------CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 7433 33242 2356789999994 5555554322 45666676544322212111010011111 12233
Q ss_pred EEEEEEcCC---CeEEEEecCCC-ceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1193 RLFWADSTN---KRIEYCDFFGR-SRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1193 ~LY~~d~~~---~~I~~~d~dG~-~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
.|.-+-... ..|...|+... ....... ..++..|.. .+ |+..+.+|.+-.+.+.|+..+...+ . ...+
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p--~~-D~~tg~l~lsGkGD~tIr~~e~~~~---~-~~~l 300 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP--HY-DESTGLIYLIGKGDGNCRYYQHSLG---S-IRKV 300 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE--ee-eCCCCCEEEEEECCCeEEEEEccCC---c-EEee
Confidence 333221111 13555555421 1111112 222223221 11 2335678888888888888887655 2 2233
Q ss_pred ecC-CCCeeeEEEEeCCCCCCCCCCCC
Q psy5806 1268 RSN-QEDFLNIKAISASKQLTWNPCAQ 1293 (1332)
Q Consensus 1268 ~~~-~~~~~~i~~~~~~~q~~~n~C~~ 1293 (1332)
... ...+..-..|.+.+..-++-|+.
T Consensus 301 ~~~~s~~p~~g~~f~Pkr~~dv~~cEi 327 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQICDVYKCEI 327 (568)
T ss_pred cccccCCCccceEEccccccCchhhhH
Confidence 222 12333333455545455566663
|
|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0092 Score=66.04 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=34.9
Q ss_pred CccccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCC
Q psy5806 389 QPNYQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKS 428 (1332)
Q Consensus 389 qp~~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~t 428 (1332)
.+.+.++|. +..|.|.|++.+++|.|.|+.||+|.+|+++
T Consensus 183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence 345678897 6789999999999999999999999998875
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.014 Score=44.63 Aligned_cols=35 Identities=31% Similarity=0.938 Sum_probs=28.3
Q ss_pred cccCCC-Cccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAP-KVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~-g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.++|.. ..|.+ .|++..++|+|.|+.||. ++++|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcCC
Confidence 466765 57776 899999999999999997 677773
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.34 E-value=3 Score=46.48 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=99.6
Q ss_pred ceeeEEEecCCeEEEEcCCC--ceEEEEeeC-CceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1091 RDNFVIDWVANNIYYIDSQM--HTINVARSD-GQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~--~~I~v~~ld-G~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
-.||.++ ..+.||-+.... ..|++.+++ |+.... +. ....--||++. +..||---|.+ +.....+
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~--~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL--GDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE--TTEEEEEESSS------SEEEEEE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE--CCEEEEEEecC------CeEEEEc
Confidence 4899994 278999986554 468888887 444333 32 22345788887 45999999987 7788888
Q ss_pred cCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc--eEEEEe-eccc----ceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS--RKIVIS-KVAP----YGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~--~~~~~~-~~~P----~glav~~~~~~~~~~ 1238 (1332)
.+.-....-+.-. ...-||+-| ++.||.+| ++.+|...|...-. +++-+. ...| .-|.. .+|
T Consensus 117 ~~tl~~~~~~~y~-~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-------i~G 185 (264)
T PF05096_consen 117 PNTLKKIGTFPYP-GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-------ING 185 (264)
T ss_dssp TTTTEEEEEEE-S-SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-------ETT
T ss_pred cccceEEEEEecC-CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE-------EcC
Confidence 8754433333321 344489854 78899998 57799999986432 333333 3344 34677 789
Q ss_pred EEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1239 ELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
+||=--|.+..|.++|+.+| .....+
T Consensus 186 ~IyANVW~td~I~~Idp~tG---~V~~~i 211 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETG---KVVGWI 211 (264)
T ss_dssp EEEEEETTSSEEEEEETTT----BEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCC---eEEEEE
Confidence 99888899999999999999 555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG3509|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.013 Score=74.91 Aligned_cols=101 Identities=28% Similarity=0.699 Sum_probs=83.4
Q ss_pred ceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccccc-----CCCCC
Q psy5806 27 ACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT-----CDAQK 101 (1332)
Q Consensus 27 ~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~-----C~~~~ 101 (1332)
.|......|++..||.+-+|+.+++. ....|++.++.|.+++|....+.||...+|.+++++.+|..+ |.+.
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~- 78 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPA--IGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPT- 78 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCcc--ccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCc-
Confidence 57778899999999999999988732 346789999999999999999999999999999988887542 4444
Q ss_pred ccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCCCCCCCCC
Q psy5806 102 EFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEG 154 (1332)
Q Consensus 102 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~dC~dg~de 154 (1332)
.+.|.+ ...|..+..-|||..+|.++++|
T Consensus 79 ~~~c~~------------------------~~~~~~~~~~~~g~~~~~~~~~~ 107 (964)
T KOG3509|consen 79 ETQCRD------------------------RLRCNPQSFQCDGTNDCKDGSDE 107 (964)
T ss_pred cccccc------------------------chhcCCccccccCCCCCCccchh
Confidence 566655 22466778899999999999988
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.9 Score=50.71 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred cCCCCceeeEEE--ecCCeEEEE-cCCCceEEEEeeC----CceEEE-Ee--cCCCCceEEEEcCCCcEEEEEecCCCCC
Q psy5806 1086 MNDTIRDNFVID--WVANNIYYI-DSQMHTINVARSD----GQHKKI-LV--NDLMEPLAIAVYPRRGLLFYSHWGLYDN 1155 (1332)
Q Consensus 1086 ~~~~~p~glAvD--w~~~~LY~t-d~~~~~I~v~~ld----G~~~~~-~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~ 1155 (1332)
.....|.||++= ..++.+|+- ....+.++.+.|. |..... +. .....|-|++||...|+||+.+...
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~--- 229 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV--- 229 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT---
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc---
Confidence 455678999984 456667763 3334677777663 322111 11 2235899999999999999999764
Q ss_pred CCCCcEEEEecC---CCceEEEEec---CC-CCcceEEEec---CCCEEEEEEcCCCeEEEEecCCCc
Q psy5806 1156 SPTTKIEKVYLD---GSYRTVLVEE---DL-AFPNELAIDF---KQRRLFWADSTNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1156 ~~~~~I~r~~ld---G~~~~~l~~~---~l-~~p~glaiD~---~~~~LY~~d~~~~~I~~~d~dG~~ 1213 (1332)
-|+|...+ +..++.+... .+ ....||+|=. ..+.|..++.+.++...++..|.+
T Consensus 230 ----GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 230 ----GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp ----EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred ----EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 59999986 3334444221 12 4577999954 235799999999999999988764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.67 E-value=10 Score=43.92 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=114.3
Q ss_pred EEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEEcCCCceEEEEeeC--CceEEE-
Q psy5806 1051 DYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYIDSQMHTINVARSD--GQHKKI- 1125 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~td~~~~~I~v~~ld--G~~~~~- 1125 (1332)
.+...++.+|+.+. ...+|..+++....-...+- .|.- +++=+-.+..+-... .+++..+.|| |+....
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-----~PGC~~iyP~~~~~F~~lC~-DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-----TPGCWLIYPSGNRGFSMLCG-DGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-----GTSEEEEEEEETTEEEEEET-TSCEEEEEETSTSSEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-----CCCEEEEEecCCCceEEEec-CCceEEEEECCCCCEeEee
Confidence 45788899999885 45679999987432222222 2322 333333556544333 4456666665 665422
Q ss_pred --EecCCCCce--EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCC---------Ccce---EEEec
Q psy5806 1126 --LVNDLMEPL--AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLA---------FPNE---LAIDF 1189 (1332)
Q Consensus 1126 --~~~~~~~P~--~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~---------~p~g---laiD~ 1189 (1332)
+....+.|. .=+++...+.+||.... +.|+.+++.|......-.-.+. .|.| +|++.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYE-------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTT-------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred ccccCCCCcccccccceECCCCeEEEEecC-------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 211222221 11233446788887654 4799999999875444221111 1443 79999
Q ss_pred CCCEEEEEEc----C-----CCeEEEEecCCCceEEEEeecccc-eEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1190 KQRRLFWADS----T-----NKRIEYCDFFGRSRKIVISKVAPY-GLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1190 ~~~~LY~~d~----~-----~~~I~~~d~dG~~~~~~~~~~~P~-glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
..++||+.=- + .-.|+.+|+....|..-+++.+|. +|+| |. +..-.||-++...+.++..|..+|
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V--sq--d~~P~L~~~~~~~~~l~v~D~~tG- 322 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV--SQ--DDKPLLYALSAGDGTLDVYDAATG- 322 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE--ES--SSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE--cc--CCCcEEEEEcCCCCeEEEEeCcCC-
Confidence 9999998621 1 225899888766665555544444 8888 11 224468888888899999999988
Q ss_pred CcceEEEEe
Q psy5806 1260 GQWDVHLIR 1268 (1332)
Q Consensus 1260 ~~~~~~~~~ 1268 (1332)
+.+..+.
T Consensus 323 --k~~~~~~ 329 (342)
T PF06433_consen 323 --KLVRSIE 329 (342)
T ss_dssp ---EEEEE-
T ss_pred --cEEeehh
Confidence 5555444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.04 Score=41.06 Aligned_cols=28 Identities=39% Similarity=0.936 Sum_probs=23.5
Q ss_pred CCC-Cccee-eeccCCCceEEeCCCCceec
Q psy5806 396 CAP-KVCSH-ICLPNKHRFTCQCPLGLTLS 423 (1332)
Q Consensus 396 C~~-g~Csh-lCl~~~~~~~C~C~~G~~L~ 423 (1332)
|.. ..|++ .|++..++|+|.|+.||.+.
T Consensus 2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASGGPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCcCCCCCCEEECCCCCeEeECCCCCccC
Confidence 554 56777 89999999999999999864
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=7.4 Score=42.29 Aligned_cols=196 Identities=12% Similarity=-0.001 Sum_probs=116.8
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
+-.|...+..+.|-.+ ....|+.++++++....+....+. .+...+.|.-.++.+| +.++.+.+.+.++.-.....
T Consensus 43 VNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred eeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccch
Confidence 4456666666555443 456688888886555444333333 5777778876688887 66778899999986532222
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
..........|+++|..+.|+..|..+ .|..=++--. -...++.+.......|++++++.+|-=++ ..++.
T Consensus 120 ~~~~~spVn~vvlhpnQteLis~dqsg-------~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~c 191 (311)
T KOG0315|consen 120 NYQHNSPVNTVVLHPNQTELISGDQSG-------NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNC 191 (311)
T ss_pred hccCCCCcceEEecCCcceEEeecCCC-------cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccE
Confidence 222334567899999999999998654 4666666433 23345555666777899999888776554 45555
Q ss_pred EEEecCC-CceEEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1205 EYCDFFG-RSRKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1205 ~~~d~dG-~~~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.-++-+ .....+.+ --.-++|..+-|| ++....|-....+|+..+.++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP----d~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP----DVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECC----CCcEEEeecCCceEEEEecCC
Confidence 5555543 22333332 1112233332232 233344555666776666543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.31 E-value=11 Score=42.13 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=117.1
Q ss_pred eEEEEEeCCCcEEEEEeCCCC--eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSG--NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~--~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
-.|+.|. .++.||-+....| +|+++++.+|......-.....-.+||++- +++||.-....+...+.+.+....
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 3688885 3468999987665 699999886544333332333357899998 899999888888888888874332
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE--EEecC---CCCcceEEEecCCCEEEEEE
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV--LVEED---LAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~--l~~~~---l~~p~glaiD~~~~~LY~~d 1198 (1332)
..+. -.....||+-|. ..|+.+|.. ++|+..+...-...- -|..+ +..-|-|.. .++.||=--
T Consensus 124 ~~~~-y~~EGWGLt~dg--~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANV 191 (264)
T PF05096_consen 124 GTFP-YPGEGWGLTSDG--KRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANV 191 (264)
T ss_dssp EEEE--SSS--EEEECS--SCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEE
T ss_pred EEEe-cCCcceEEEcCC--CEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEe
Confidence 2232 224679999774 478888843 578877764433211 22211 333444443 478888665
Q ss_pred cCCCeEEEEecCCCceEEEEe---e--------------cccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS---K--------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~---~--------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
-.++.|.++|+.....+..+. + .-..|||. ++..++||+|--.=..++++..
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy-----d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY-----DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE-----ETTTTEEEEEETT-SEEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE-----eCCCCEEEEEeCCCCceEEEEE
Confidence 679999999997655555543 1 12468999 6678899999866677777764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=93.98 E-value=14 Score=42.09 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~ 1108 (1332)
+++||++|...++|.++++++|. .+.+. .--+.|.||++. ++.+|+.-+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~-~e~Va-~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGK-FQPVA-FLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCc-EEEEE-ECCCCCccccee--CCEEEEEec
Confidence 57999999999999999976343 33333 445689999998 888887644
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG3509|consensus | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.044 Score=70.34 Aligned_cols=82 Identities=27% Similarity=0.570 Sum_probs=72.8
Q ss_pred cccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC-CEEEeeeecCCCCCCCCCCC
Q psy5806 11 GYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG-HCILKTWLCDGIPDCSLGED 89 (1332)
Q Consensus 11 ~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsD 89 (1332)
....|.+.+|+|. +++|....|.||.+.+|.+++++.+|.....+..|.+.+++|.+- +|-+....|||.+||.|+++
T Consensus 28 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~ 106 (964)
T KOG3509|consen 28 IGSACSPNEFKCN-NPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSD 106 (964)
T ss_pred ccccCCcchhccC-CccccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCCccch
Confidence 3446889999998 999999999999999999999998886555667889999999976 79999999999999999999
Q ss_pred cccc
Q psy5806 90 ERNC 93 (1332)
Q Consensus 90 E~~C 93 (1332)
|..|
T Consensus 107 ~~~~ 110 (964)
T KOG3509|consen 107 EVGC 110 (964)
T ss_pred hccc
Confidence 9765
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.7 Score=48.21 Aligned_cols=165 Identities=14% Similarity=0.040 Sum_probs=94.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCe------EEEEECCC--CCCceeEee-------c-C------CCCceeeEEEecCC
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGN------LRTFDMSD--STRIKPIPL-------M-N------DTIRDNFVIDWVAN 1101 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~------I~~~~l~~--g~~~~~i~~-------~-~------~~~p~glAvDw~~~ 1101 (1332)
+....||+|++..+++|... ..+. ++.+.+.. +....+.+. . + .-.++|||+ ...+
T Consensus 19 ~GGlSgl~~~~~~~~~~avS-D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVS-DRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDG 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEE-CCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCC
Confidence 44567999997666655443 3333 66655442 111111110 0 0 116789999 5799
Q ss_pred eEEEEcCCC------ceEEEEeeCCceEEEE--ec-------------CCCCceEEEEcCCCcEEEEEecCCCC-CC-C-
Q psy5806 1102 NIYYIDSQM------HTINVARSDGQHKKIL--VN-------------DLMEPLAIAVYPRRGLLFYSHWGLYD-NS-P- 1157 (1332)
Q Consensus 1102 ~LY~td~~~------~~I~v~~ldG~~~~~~--~~-------------~~~~P~~iavdp~~g~Lywtd~~~~~-~~-~- 1157 (1332)
.+||++... .+|..++.+|.....+ -. .....-+||+.|....||.+....-. +. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 999999999 9999999998864332 11 12246789999976668887644311 11 1
Q ss_pred ------CCcEEEEecCC--Cc-eEEEEec-------CCCCcceEEEecCCCEEEEEEcC-------CCeEEEEecCC
Q psy5806 1158 ------TTKIEKVYLDG--SY-RTVLVEE-------DLAFPNELAIDFKQRRLFWADST-------NKRIEYCDFFG 1211 (1332)
Q Consensus 1158 ------~~~I~r~~ldG--~~-~~~l~~~-------~l~~p~glaiD~~~~~LY~~d~~-------~~~I~~~d~dG 1211 (1332)
..+|.+.+... .. .+-.+.. ....+..|+.- .+++||+.+.. ..+|..+++.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 14677776653 11 1122221 12334444444 34558887765 45677777754
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.6 Score=49.47 Aligned_cols=118 Identities=20% Similarity=0.134 Sum_probs=73.8
Q ss_pred CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE-EecCC-------------CCcceEEEecCCCEEEEE
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL-VEEDL-------------AFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l-~~~~l-------------~~p~glaiD~~~~~LY~~ 1197 (1332)
.+-+|++ +..|.+||++.+.......++|.+++++|.....+ +...+ .-..|||+.+++++||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5569999 66999999987642233358999999999886655 33222 114489999999989988
Q ss_pred EcCC---------------CeEEEEecC--CC-ceEEEEee---------cccce-EEEecCCccccccEEEEEECC---
Q psy5806 1198 DSTN---------------KRIEYCDFF--GR-SRKIVISK---------VAPYG-LSVRQSPGKAFIVELYWTDWE--- 1246 (1332)
Q Consensus 1198 d~~~---------------~~I~~~d~d--G~-~~~~~~~~---------~~P~g-lav~~~~~~~~~~~lYwtd~~--- 1246 (1332)
-... -+|.++|.. |. ..+..... ..+.. +++ .++.||+....
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-------~d~~lLvLER~~~~ 237 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-------PDGRLLVLERDFSP 237 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-------CCCcEEEEEccCCC
Confidence 5442 356666664 21 22223221 12222 344 67778888865
Q ss_pred ----CCEEEEEEecC
Q psy5806 1247 ----AMSVVIAREKS 1257 (1332)
Q Consensus 1247 ----~~~V~~~~~~~ 1257 (1332)
..+|++++...
T Consensus 238 ~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 238 GTGNYKRIYRVDLSD 252 (326)
T ss_pred CccceEEEEEEEccc
Confidence 44566666543
|
|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.031 Score=41.95 Aligned_cols=34 Identities=38% Similarity=0.879 Sum_probs=25.6
Q ss_pred ccCCCCCCcc--ccccCCCCccccCCCCeeEccCCccc
Q psy5806 972 CGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 972 C~~~nGgCsh--lCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
|..+||+|.. .|..++++++|.|+.||. .||..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 6778899964 799999999999999998 456655
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.046 Score=60.44 Aligned_cols=38 Identities=29% Similarity=0.850 Sum_probs=34.3
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRS 1006 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~t 1006 (1332)
.++|...++.|.|.|..++++|.|+|+.||.|..|++|
T Consensus 187 ~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 187 PDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred chhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence 68898888999999999999999999999999877654
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=93.10 E-value=4.9 Score=55.54 Aligned_cols=31 Identities=32% Similarity=0.951 Sum_probs=24.5
Q ss_pred CccccccCCCCcce--eeeccCC--CceEEeCCCC
Q psy5806 389 QPNYQSHCAPKVCS--HICLPNK--HRFTCQCPLG 419 (1332)
Q Consensus 389 qp~~~n~C~~g~Cs--hlCl~~~--~~~~C~C~~G 419 (1332)
.|...|+|....|. ++|+..+ ..|.|.||.|
T Consensus 3642 Cp~~~~~C~~~pcp~~~~Cvs~~~~~~~~cVcP~g 3676 (4289)
T KOG1219|consen 3642 CPVETNQCAKSPCPAGNLCVSSVHNSTYTCVCPIG 3676 (4289)
T ss_pred CCcccCccccCCCcccCcccccccccceeEeccCc
Confidence 34457889988885 5899875 3899999999
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=92.98 E-value=32 Score=43.17 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=120.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC--CCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN--DTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~--~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~ 1123 (1332)
+..+.++..+++|-+.....|.|...+.. ....+.... ......||+.+.+..| .|..+.+.|.+++.. |...
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWq---sEsYVlKQQgH~~~i~~l~YSpDgq~i-aTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQ---SESYVLKQQGHSDRITSLAYSPDGQLI-ATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEee---ccceeeeccccccceeeEEECCCCcEE-EeccCCCcEEEEeccCceEE
Confidence 56777888888888887777777777644 122233222 3366789999765555 788888999999998 5555
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+...-.....++.+.. +|+..++..-. +++..-+| ...+-+.+....-.+-..+|+|+.+..+.-.....-
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecC------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 55654445566776665 33333333222 33444444 222333333322233457899999888887777777
Q ss_pred eEEEEecCCCc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1203 RIEYCDFFGRS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1203 ~I~~~d~dG~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
.|..-++.... ..++-. -....+|++ +..+..||-..| .++|.+.+....+
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f-----~~~~~~LaS~SW-DkTVRiW~if~s~ 511 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSF-----SPDGSLLASGSW-DKTVRIWDIFSSS 511 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEE-----ccccCeEEeccc-cceEEEEEeeccC
Confidence 88888886433 333333 334456676 345666666655 4688877777653
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.26 Score=45.13 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=34.4
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~ 1209 (1332)
||+...+ +.+++..||||++|++++.||+++...+.|..+..
T Consensus 42 d~~~~~~-va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKV-VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEE-eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 5555444 44579999999999999999999999999988754
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=15 Score=44.45 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=61.5
Q ss_pred CcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--
Q psy5806 1142 RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-- 1219 (1332)
Q Consensus 1142 ~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-- 1219 (1332)
.+.||++... +.++.+++.... .+....+..+..++++ +++||+.+ ..++|..+|...... +..
T Consensus 256 ~~~vy~~~~~-------g~l~ald~~tG~--~~W~~~~~~~~~~~~~--~~~vy~~~-~~g~l~ald~~tG~~--~W~~~ 321 (394)
T PRK11138 256 GGVVYALAYN-------GNLVALDLRSGQ--IVWKREYGSVNDFAVD--GGRIYLVD-QNDRVYALDTRGGVE--LWSQS 321 (394)
T ss_pred CCEEEEEEcC-------CeEEEEECCCCC--EEEeecCCCccCcEEE--CCEEEEEc-CCCeEEEEECCCCcE--EEccc
Confidence 5689988753 368877774332 3343344444445554 78999986 567899999853321 221
Q ss_pred ---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.....+.++ .+++||+.+. .+.|+.++..+|
T Consensus 322 ~~~~~~~~sp~v-------~~g~l~v~~~-~G~l~~ld~~tG 355 (394)
T PRK11138 322 DLLHRLLTAPVL-------YNGYLVVGDS-EGYLHWINREDG 355 (394)
T ss_pred ccCCCcccCCEE-------ECCEEEEEeC-CCEEEEEECCCC
Confidence 112234567 7899999974 578999999888
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=22 Score=40.16 Aligned_cols=154 Identities=15% Similarity=0.042 Sum_probs=101.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeE-EEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFV-IDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glA-vDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
..+.+|+|+..+..+..+ ..+.+|+.+++.+|....+|....-+ +.-+- ....+.-||-+......|+-.++. .++
T Consensus 15 ~~i~sl~fs~~G~~lits-s~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITS-SEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CceeEEEecCCCCEEEEe-cCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 346799999888777664 47778998998877777666543211 22222 233455677777778889988886 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+...+--+...+|.+.|.+ -.|.+..-. ..|..=++.-.+.+.++. +..+.-.|.|++ +.++-+-.+++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D------~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~-GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKD-DTFLSSSLD------KTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE-GLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCC-CeEEecccC------CeEEeeEecCCCCceEEe--cCCCcceeECCC-CcEEEEecCCC
Confidence 44454444678999999954 888886544 456666777667666665 344456789965 44444444555
Q ss_pred eEEEEecC
Q psy5806 1203 RIEYCDFF 1210 (1332)
Q Consensus 1203 ~I~~~d~d 1210 (1332)
.|.-+|+.
T Consensus 163 ~IkLyD~R 170 (311)
T KOG1446|consen 163 LIKLYDLR 170 (311)
T ss_pred eEEEEEec
Confidence 88887774
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=10 Score=41.70 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCceEEEEee-CCceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe-cCCCceEEEE
Q psy5806 1100 ANNIYYIDSQMHTINVARS-DGQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY-LDGSYRTVLV 1175 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~l-dG~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~-ldG~~~~~l~ 1175 (1332)
+++||+++ ..+.|..++. +|+..-. +......+ .+++ .+.||+.... .+|+.++ .+|...-.+.
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~--~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVVD--GGRVYVGTSD-------GSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEEE--TTEEEEEETT-------SEEEEEETTTSCEEEEEE
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eeec--ccccccccce-------eeeEecccCCcceeeeec
Confidence 89999985 4668888887 6765433 21222222 2333 5688888733 3788888 5676655432
Q ss_pred ecC-----CCCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEeecc-------------cceEEEecCCcccc
Q psy5806 1176 EED-----LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVISKVA-------------PYGLSVRQSPGKAF 1236 (1332)
Q Consensus 1176 ~~~-----l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~~~~-------------P~glav~~~~~~~~ 1236 (1332)
... +..+...+++ ++++|.... .+.|..+|+. |..+-.. .... .-.+.+ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~-------~ 172 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVI-------S 172 (238)
T ss_dssp E-SSCTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEEC-------C
T ss_pred cccccccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEE-------E
Confidence 211 1223334444 788888764 6788888875 4332111 1111 123344 4
Q ss_pred ccEEEEEECCCCEEEEEEecCC
Q psy5806 1237 IVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1237 ~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++.+|++..... ++.++..+|
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg 193 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATG 193 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTT
T ss_pred CCEEEEEcCCCe-EEEEECCCC
Confidence 669999886554 666688887
|
... |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=26 Score=46.73 Aligned_cols=195 Identities=7% Similarity=-0.034 Sum_probs=107.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCC----CCc--eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDS----TRI--KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g----~~~--~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG 1120 (1332)
+.+++|++.++.|..+ ...+.|...++... ... ......+.....+++.+...+++..+-...+.|.++++..
T Consensus 486 V~~i~fs~dg~~latg-g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATA-GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEE-eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 5789999887655544 46788887775421 110 1111112234456666544344445555677999999874
Q ss_pred ceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1121 QHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1121 ~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
... ..+..-.....+|+++|..+.++++-... +.|..-++........+... .....+.+....+.++.+-.
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD------GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC------CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 433 33433335578999998777777776443 45666666544433333322 23444555444455555556
Q ss_pred CCCeEEEEecCCCce--EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1200 TNKRIEYCDFFGRSR--KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1200 ~~~~I~~~d~dG~~~--~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
..+.|...|+..... ..+.. ......+.+ .++..+++-...+.|...+..
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f-------~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-------VDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEE-------eCCCEEEEEECCCEEEEEeCC
Confidence 778888888854321 12211 223345555 333344455556677666654
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=92.12 E-value=23 Score=39.38 Aligned_cols=203 Identities=11% Similarity=0.004 Sum_probs=129.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
+.+++..+.++ .+++-...+.++.-++..|.....+. -.-....++||+..++.| ++-+...+|...+.-|.....+
T Consensus 66 v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~ 142 (315)
T KOG0279|consen 66 VSDVVLSSDGN-FALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTI 142 (315)
T ss_pred ecceEEccCCc-eEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEE
Confidence 45666666655 45555578889999998664444444 233467899999989988 7877788999999999887775
Q ss_pred ecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1127 VND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1127 ~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
..+ .+-..-+.+.|.....+....+. ...+-.=++++-+...-....-...+.+++.+++.. .-+-...+.+
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGgkdg~~ 216 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASW-----DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGGKDGEA 216 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccC-----CceEEEEccCCcchhhccccccccEEEEEECCCCCE-EecCCCCceE
Confidence 443 45678899999764444444332 133444566665544333333456778888877544 3344456777
Q ss_pred EEEecC-CCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1205 EYCDFF-GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1205 ~~~d~d-G~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+--|++ |.+...+-......+|++ ..++.+..-....+|...+.+++ ..+..+.
T Consensus 217 ~LwdL~~~k~lysl~a~~~v~sl~f-------spnrywL~~at~~sIkIwdl~~~---~~v~~l~ 271 (315)
T KOG0279|consen 217 MLWDLNEGKNLYSLEAFDIVNSLCF-------SPNRYWLCAATATSIKIWDLESK---AVVEELK 271 (315)
T ss_pred EEEEccCCceeEeccCCCeEeeEEe-------cCCceeEeeccCCceEEEeccch---hhhhhcc
Confidence 777775 444222222556677887 55553333345566888888776 4444443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.76 E-value=10 Score=46.07 Aligned_cols=177 Identities=13% Similarity=0.041 Sum_probs=96.8
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+..+++. +..++++. ..+.-...++.+.+++|-++-.. .-.|.+.+++++....+......=..=...|...+|
T Consensus 219 ~i~~~~l~~-g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 219 RIYYLDLNT-GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred eEEEEeccC-Cccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEE
Confidence 477777663 33444443 22333445666667887776444 446888899887754443321111122346667778
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe--EEEEecC-CCceEEEEe--e
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR--IEYCDFF-GRSRKIVIS--K 1220 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~--I~~~d~d-G~~~~~~~~--~ 1220 (1332)
+|+.... +.+.|++.+++|+..+.+.... ....--.+.+++++|-+.....+. |...++. |...+.+.. .
T Consensus 297 vf~Sdr~----G~p~I~~~~~~g~~~~riT~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~ 371 (425)
T COG0823 297 VFTSDRG----GRPQIYLYDLEGSQVTRLTFSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL 371 (425)
T ss_pred EEEeCCC----CCcceEEECCCCCceeEeeccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc
Confidence 7774322 4689999999999976655432 332234567778887777644444 5555553 222333322 3
Q ss_pred cccceEEEecCCccccccE-EEEEECCCCEEEEEEecCC
Q psy5806 1221 VAPYGLSVRQSPGKAFIVE-LYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1221 ~~P~glav~~~~~~~~~~~-lYwtd~~~~~V~~~~~~~g 1258 (1332)
..+-..+. .+.. +|.+.+..+.+...-..++
T Consensus 372 ~e~ps~~~-------ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 372 NESPSWAP-------NGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred CCCCCcCC-------CCceEEEeccCCCCceEEEeeccc
Confidence 33334444 4433 4545555455544444444
|
|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.12 Score=38.35 Aligned_cols=29 Identities=41% Similarity=1.100 Sum_probs=23.8
Q ss_pred ccCCCCCCcc-ccccCCCCccccCCCCeeEc
Q psy5806 972 CGSNNGGCSH-LCLRNPTNFTCACPTGILLS 1001 (1332)
Q Consensus 972 C~~~nGgCsh-lCl~~p~~~~C~Cp~g~~l~ 1001 (1332)
|..+ +.|.+ .|..+++++.|.|+.||.+.
T Consensus 2 C~~~-~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASG-GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCc-CCCCCCEEECCCCCeEeECCCCCccC
Confidence 4444 56877 89999999999999999864
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=91.25 E-value=38 Score=41.81 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=116.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee-CC-ceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS-DG-QHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG-~~~ 1123 (1332)
+..++|.+.++. .++-...+.|+...+..+.. .............++++.+.+.. -++-....+|.++++ +. ...
T Consensus 162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~-l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 162 VTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSY-LLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred eEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcE-EEEecCCceEEEeeccCCCeEE
Confidence 445777777766 44443555555555432221 11111122335678899876663 366666788999999 43 556
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+++..=......++++|.. .+..+-... ..|..-++.+......+...-...+++++..++..|.-+ ...+.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~ 311 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDG-NLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGT 311 (456)
T ss_pred EEecCCCCceEEEEecCCC-CEEEEecCC------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCcc
Confidence 6665544567999999955 776665544 456666666544444444344566778888776666665 66889
Q ss_pred EEEEecCCCce---EEEEeecc--c-ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1204 IEYCDFFGRSR---KIVISKVA--P-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~~~---~~~~~~~~--P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|...|+.+... +.+....+ | ..+.. ..++...++-...+.+...+...+
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f------sp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQF------SPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEE------CCCCcEEEEecCCCeEEEEEccCC
Confidence 99999986652 23332333 3 33344 123334445556667777776655
|
|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.17 Score=38.55 Aligned_cols=34 Identities=32% Similarity=0.982 Sum_probs=25.8
Q ss_pred CcccCCCCCCcc--ccccCCCCccccCCCCeeEccCCccc
Q psy5806 970 NACGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 970 n~C~~~nGgCsh--lCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
++|... ..|.+ .|..++++|.|.|+.||. ++++|
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred ccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 456542 35665 899999999999999987 56666
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=25 Score=44.69 Aligned_cols=186 Identities=10% Similarity=-0.045 Sum_probs=99.3
Q ss_pred cceEEEEEeCCCcEEEEEeC-------CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--------
Q psy5806 1045 MSSIFFDYHYSKNLIYFADM-------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-------- 1109 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~-------~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-------- 1109 (1332)
..+...++++.++++.++.. ....|+.++.. +.. ..+. .+. .-..-.+++.++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence 45667778888888877752 23467777743 333 3332 221 12333455555666555322
Q ss_pred ---CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE---EecCCCceEE----EEecCC
Q psy5806 1110 ---MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK---VYLDGSYRTV----LVEEDL 1179 (1332)
Q Consensus 1110 ---~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r---~~ldG~~~~~----l~~~~l 1179 (1332)
.+.|.+..+++..... .--..+..++++|..-+|.+.-. ++|+. +..++..... -+...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--------GKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--------CEEEEEEEEeCCCCceeecccEEeeccc
Confidence 2234334444321111 11135888999998778877753 24555 3333433222 022234
Q ss_pred CC-cceEEEecCCCEEEEEEcC-CCeEEEEecCCCceEEEEe--eccc-ceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1180 AF-PNELAIDFKQRRLFWADST-NKRIEYCDFFGRSRKIVIS--KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1180 ~~-p~glaiD~~~~~LY~~d~~-~~~I~~~d~dG~~~~~~~~--~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
.. +..++.-.+ ..|++.... ...++++++||...+.+-. ...| .+|+- ..+.||++|.. .+.+..
T Consensus 496 ~~~~~~l~W~~~-~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa-------~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 496 GDTAVSLDWRTG-DSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAA-------SPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred CCccccceEecC-CEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEec-------CCceEEEEcCC--ceEEec
Confidence 33 355665534 446666544 3459999999987665333 2223 34555 55689999853 355554
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=91.19 E-value=39 Score=40.20 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=109.2
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCc-cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEY-MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~-~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
..+|.+..-+..+|....+..-. ..+..- ..+.+|-++..+..|.-.+ -.+++...+...|+-.+.+ .+..
T Consensus 247 G~~LatG~~~G~~riw~~~G~l~----~tl~~HkgPI~slKWnk~G~yilS~~-vD~ttilwd~~~g~~~q~f---~~~s 318 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNLI----STLGQHKGPIFSLKWNKKGTYILSGG-VDGTTILWDAHTGTVKQQF---EFHS 318 (524)
T ss_pred CCeEEEeecCcEEEEEecCchhh----hhhhccCCceEEEEEcCCCCEEEecc-CCccEEEEeccCceEEEee---eecc
Confidence 45666655444355555443211 111111 2246777777766665554 4455555554323333222 2334
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
..+|.|||.+..=|++....+.|.|+.+++..+.. +..--+...+|..+| +|.|.-+-... .+-+|+-..-++.
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD----~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDD----GTLKIWSMGQSNS 393 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCC----CeeEeeecCCCcc
Confidence 45899999999999999999999999999876655 544446788999999 56666665433 2455664333222
Q ss_pred c------eEEEEecCCCCcce-EEEec-CCCEEEEEEcCCCeEEEEecC-CCceEEEEe-ecccceEEE
Q psy5806 1170 Y------RTVLVEEDLAFPNE-LAIDF-KQRRLFWADSTNKRIEYCDFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1170 ~------~~~l~~~~l~~p~g-laiD~-~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
. .+.|+... -.|.| ++-.+ .+-.|-|+ +....+...|.. |....++.. ....++|++
T Consensus 394 ~~~l~~Hskei~t~~-wsp~g~v~~n~~~~~~l~sa-s~dstV~lwdv~~gv~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIK-WSPTGPVTSNPNMNLMLASA-SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred hhhhhhhccceeeEe-ecCCCCccCCCcCCceEEEe-ecCCeEEEEEccCCceeEeeccCCCceEEEEe
Confidence 2 11122111 11222 22222 23334444 344556666664 444444433 555577777
|
|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.12 Score=38.79 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=21.3
Q ss_pred CCccee--eeccCCCceEEeCCCCceecCCCCCc
Q psy5806 398 PKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSC 429 (1332)
Q Consensus 398 ~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC 429 (1332)
+++|+. .|.+.+++|+|.|..||.. ||..|
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 456654 7889999999999999984 56655
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.23 Score=36.66 Aligned_cols=26 Identities=31% Similarity=0.752 Sum_probs=21.0
Q ss_pred CCcce--eeeccCCCceEEeCCCCceec
Q psy5806 398 PKVCS--HICLPNKHRFTCQCPLGLTLS 423 (1332)
Q Consensus 398 ~g~Cs--hlCl~~~~~~~C~C~~G~~L~ 423 (1332)
...|. ++|.+.+++|+|.|+.||...
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 34555 688998899999999999754
|
|
| >PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.2 Score=36.39 Aligned_cols=29 Identities=34% Similarity=0.741 Sum_probs=21.7
Q ss_pred CCCCcceeeeccCCCceEEeCCCCceecCC
Q psy5806 396 CAPKVCSHICLPNKHRFTCQCPLGLTLSPD 425 (1332)
Q Consensus 396 C~~g~CshlCl~~~~~~~C~C~~G~~L~~d 425 (1332)
|....|...|-+... ..|.||+||.|+.+
T Consensus 3 Cn~t~CpA~CDpn~~-~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 3 CNQTECPADCDPNSP-GQCFCPEGYILDEG 31 (34)
T ss_pred cccccCCCccCCCCC-CceeCCCceEecCC
Confidence 444567788887553 49999999999754
|
Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=90.85 E-value=17 Score=42.82 Aligned_cols=157 Identities=14% Similarity=0.192 Sum_probs=73.6
Q ss_pred cEEEEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEE--EecCCCC
Q psy5806 1057 NLIYFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKI--LVNDLME 1132 (1332)
Q Consensus 1057 ~~lY~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~--~~~~~~~ 1132 (1332)
+.||.++.. ...++.++|+++.-.+..-..+ .+..|..+....+.||+...+ .++..++|+... +.+ +..+ -.
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~p~~-~~ 125 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEVPDD-WK 125 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE--TT-EE
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEECCcc-cc
Confidence 445555532 3458888888443333222112 233466777788998765432 467888887543 333 2222 12
Q ss_pred ceEEEE-cCCCcEEEEE-e-----------cCCCC----CCCCCcEEEEecCCCceEEEEecCCCCcceEEEec-CCCEE
Q psy5806 1133 PLAIAV-YPRRGLLFYS-H-----------WGLYD----NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF-KQRRL 1194 (1332)
Q Consensus 1133 P~~iav-dp~~g~Lywt-d-----------~~~~~----~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~-~~~~L 1194 (1332)
.++-.+ +. .+.+++. + |..+. ..+..+|.++++.+.+.++++... .+-+-+-..+ +...|
T Consensus 126 g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 126 GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLI 203 (386)
T ss_dssp EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEE
T ss_pred cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEE
Confidence 334333 33 3333322 1 11000 234678999999999988888754 4433444444 23445
Q ss_pred EEEEcC-----CCeEEEEecCCCceEEEE
Q psy5806 1195 FWADST-----NKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1195 Y~~d~~-----~~~I~~~d~dG~~~~~~~ 1218 (1332)
-++--+ ..||+.++.||++.+.+.
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred EEeccCCcceeceEEEEEEcCCCcceeee
Confidence 555332 469999999998765553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=90.76 E-value=36 Score=39.06 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=118.7
Q ss_pred EEeCCCcEEEEEeC----CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC------c---------
Q psy5806 1051 DYHYSKNLIYFADM----RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM------H--------- 1111 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~----~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~------~--------- 1111 (1332)
.|++..++||-++. ..|.|-..+...+-.+.-.+.+..-.|.-|.+.+.++.|-+++.+- +
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 48889999999864 3477888886622111122223334699999999898999987541 1
Q ss_pred --eEEEE-eeCCceEEE--Eec--CCCCceEEEEcCCCcEEEEEecCCCC-CCCCCcEEEEecCCCceEEE-EecC----
Q psy5806 1112 --TINVA-RSDGQHKKI--LVN--DLMEPLAIAVYPRRGLLFYSHWGLYD-NSPTTKIEKVYLDGSYRTVL-VEED---- 1178 (1332)
Q Consensus 1112 --~I~v~-~ldG~~~~~--~~~--~~~~P~~iavdp~~g~Lywtd~~~~~-~~~~~~I~r~~ldG~~~~~l-~~~~---- 1178 (1332)
.+..+ ..+|+.... +.. ...+.|.||+++ .|.+.+.....-. ....+-|.....++.. +.+ ....
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~ 214 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRR 214 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHh
Confidence 12222 223443322 211 224689999999 6888888643311 1123455555555432 222 1111
Q ss_pred -CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1179 -LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1179 -l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
-.+.-.|+++.+++.+..+-...+.+...|.........+.+...-||+. ..+- |+.-...+.+.+.....
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~-------~~~~-f~~ssG~G~~~~~~~~~ 286 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAP-------TDDG-FLVSSGQGQLIRLSPDG 286 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeee-------cCCc-eEEeCCCccEEEccCcc
Confidence 13455789998888999999899999998665333222222667778888 5444 55555778887776544
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=90.51 E-value=53 Score=40.58 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=117.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC-CCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS-TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g-~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
..+.+++|.+... +..+-....+|+..++... ....++. .-......+++.+.+ ++.++-...+.|+++++. |+.
T Consensus 204 ~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 204 RGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred cceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence 3467889988876 4455556778888887322 3333332 333467899999988 777888888899999998 455
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE--EEEecCCCCc---ceEEEecCCCEEEEE
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT--VLVEEDLAFP---NELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~--~l~~~~l~~p---~glaiD~~~~~LY~~ 1197 (1332)
..++..-.....++++.+ .|.++++.... ..|..-++...... .++. ....| .-+.++++++.|+.
T Consensus 281 ~~~l~~hs~~is~~~f~~-d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~- 351 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSP-DGNLLVSASYD------GTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLS- 351 (456)
T ss_pred EEeeeccCCceEEEEECC-CCCEEEEcCCC------ccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcEEEE-
Confidence 555655445678899988 56666766433 56777777666622 2222 12233 44556655544444
Q ss_pred EcCCCeEEEEecC-CCceEEEEe--ec--ccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFF-GRSRKIVIS--KV--APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~d-G~~~~~~~~--~~--~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
-...+.+.-.++. +........ .. -.+.... -.++....+-...+.|+..+..++
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL------STGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccc------cCCCCeEEEEeCCceEEEEeCCcc
Confidence 3455567777776 333333222 11 1222221 134445555567778888887765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.24 E-value=49 Score=40.14 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=107.2
Q ss_pred EEEEeCCCcEEEEE-eCCCC---eEEEEECCCCCCceeEeecCCCCceeeEEEecCC--eEEEEcCC----------Cce
Q psy5806 1049 FFDYHYSKNLIYFA-DMRSG---NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN--NIYYIDSQ----------MHT 1112 (1332)
Q Consensus 1049 ~id~d~~~~~lY~s-d~~~~---~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~--~LY~td~~----------~~~ 1112 (1332)
++.+++.+++|-++ |..++ .|+.+++.+|.. +...+..+.+=.+-|..+ .+|++... ...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~----l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF----LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE----EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC----cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 45566666666655 32222 367777764422 222222333222555554 67776433 234
Q ss_pred EEEEeeCCceE--EEEecCCCCce---EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-----ceEEEEecCCCCc
Q psy5806 1113 INVARSDGQHK--KILVNDLMEPL---AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-----YRTVLVEEDLAFP 1182 (1332)
Q Consensus 1113 I~v~~ldG~~~--~~~~~~~~~P~---~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-----~~~~l~~~~l~~p 1182 (1332)
|...++..... .+|....+.+. ++.+++...+|+++.... . ....++.++++.. ....+.. ... -
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--~-~~s~v~~~d~~~~~~~~~~~~~l~~-~~~-~ 278 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--T-SESEVYLLDLDDGGSPDAKPKLLSP-RED-G 278 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--S-SEEEEEEEECCCTTTSS-SEEEEEE-SSS-S
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--c-cCCeEEEEeccccCCCcCCcEEEeC-CCC-c
Confidence 55556543322 34555445554 788899888998876554 1 1367999999874 3333333 211 1
Q ss_pred ceEEEecCCCEEEEEE---cCCCeEEEEecCCCc----eEEEEe---ecccceEEEecCCccccccEEEEEEC--CCCEE
Q psy5806 1183 NELAIDFKQRRLFWAD---STNKRIEYCDFFGRS----RKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSV 1250 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d---~~~~~I~~~d~dG~~----~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V 1250 (1332)
..-.++..++++|+.. +.+++|.+++++... ..+++. .....++.+ ++++|++... ...+|
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~-------~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL-------FKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-------ETTEEEEEEEETTEEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-------ECCEEEEEEEECCccEE
Confidence 1234666688888743 237899999997543 335555 345778888 8999988876 34455
Q ss_pred EEEEec
Q psy5806 1251 VIAREK 1256 (1332)
Q Consensus 1251 ~~~~~~ 1256 (1332)
...++.
T Consensus 352 ~v~~~~ 357 (414)
T PF02897_consen 352 RVYDLD 357 (414)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 666655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=90.01 E-value=37 Score=38.04 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCc
Q psy5806 1065 RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRG 1143 (1332)
Q Consensus 1065 ~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g 1143 (1332)
+..+.-.-+++.|.....+. -..+...+|++-+...|.|++-.-.....++++. |..++.+..-....++|.+.| +|
T Consensus 164 GD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G 241 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SG 241 (343)
T ss_pred CCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CC
Confidence 45555555666443333332 2345677888888789999987776677778885 666666655556789999999 89
Q ss_pred EEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC--CCCcceEEEecCCCEEEEEEcCCCeEEEEec-CCCceEEEEe-
Q psy5806 1144 LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED--LAFPNELAIDFKQRRLFWADSTNKRIEYCDF-FGRSRKIVIS- 1219 (1332)
Q Consensus 1144 ~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~--l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~-dG~~~~~~~~- 1219 (1332)
.-|.|-... +.....+|-......++... +.-.+.+++. ..+||.++-.....+..-|. .|...-++..
T Consensus 242 ~afatGSDD------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH 314 (343)
T KOG0286|consen 242 DAFATGSDD------ATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH 314 (343)
T ss_pred CeeeecCCC------ceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccceEEEeecc
Confidence 999986554 44555556554444444422 2234566676 45666666556666665544 2333333321
Q ss_pred -------ecccceEEE
Q psy5806 1220 -------KVAPYGLSV 1228 (1332)
Q Consensus 1220 -------~~~P~glav 1228 (1332)
...|.|+|+
T Consensus 315 eNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAV 330 (343)
T ss_pred CCeeEEEEECCCCcEE
Confidence 567778777
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.89 E-value=16 Score=45.75 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred eCCCcEEEEEeCCC-CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC-CceEEEEeeC-C---------
Q psy5806 1053 HYSKNLIYFADMRS-GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-MHTINVARSD-G--------- 1120 (1332)
Q Consensus 1053 d~~~~~lY~sd~~~-~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-~~~I~v~~ld-G--------- 1120 (1332)
++....+|.+|... +.|+|+-.+..... ......+--++ .+.||++... ...++.+.|. +
T Consensus 255 ~~~~~vvY~gDD~~~~~lYkFVs~~~~~~------~~~~~~~~ll~--~GtLyaak~~~~g~~~Wv~L~~~~~~l~~~~~ 326 (524)
T PF05787_consen 255 DPGRVVVYMGDDGRNGYLYKFVSDKPWDP------GDRAANRDLLD--EGTLYAAKFNQDGTGEWVPLGHGQGGLTAKNG 326 (524)
T ss_pred cCCeEEEEEEecCCCCeEEEEecCCCCCC------cccchhhhhhh--CCEeceEEECCCCcEEEEECCCcccccccCCC
Confidence 67777889988644 56787763311000 00000011123 6777776443 2345555552 1
Q ss_pred --c-------eEEE--E--ecCCCCceEEEEcCCCcEEEEEecCCCC-------------CCCCCcEEEEecCCC-----
Q psy5806 1121 --Q-------HKKI--L--VNDLMEPLAIAVYPRRGLLFYSHWGLYD-------------NSPTTKIEKVYLDGS----- 1169 (1332)
Q Consensus 1121 --~-------~~~~--~--~~~~~~P~~iavdp~~g~Lywtd~~~~~-------------~~~~~~I~r~~ldG~----- 1169 (1332)
. .|.. . .+.+++|-+|+++|.+|.||++..+... ....+.|+|...++.
T Consensus 327 ~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~ 406 (524)
T PF05787_consen 327 FADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAAT 406 (524)
T ss_pred CCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccc
Confidence 0 0111 1 2467899999999999999999755420 123467999998876
Q ss_pred --ceEEEEe-----------------cCCCCcceEEEecCCCEEEEEEc
Q psy5806 1170 --YRTVLVE-----------------EDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1170 --~~~~l~~-----------------~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
....++. ..+..|..|++|+. ++||+.+-
T Consensus 407 ~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~-G~LwI~eD 454 (524)
T PF05787_consen 407 TFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPD-GNLWIQED 454 (524)
T ss_pred eeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCC-CCEEEEeC
Confidence 2222221 12567999999975 55666643
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=24 Score=42.51 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=40.9
Q ss_pred CCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++.||++. ..+.+..+|.......--.....+..+++ .+++||+.+ ..+.|+.++..+|
T Consensus 256 ~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~-------~~~~vy~~~-~~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALA-YNGNLVALDLRSGQIVWKREYGSVNDFAV-------DGGRIYLVD-QNDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEE-cCCeEEEEECCCCCEEEeecCCCccCcEE-------ECCEEEEEc-CCCeEEEEECCCC
Confidence 57899876 45788888885322111111334456778 899999998 4689999999887
|
|
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.39 Score=36.05 Aligned_cols=30 Identities=30% Similarity=0.776 Sum_probs=23.6
Q ss_pred cccCCC-Ccc--eeeeccCCCceEEeCCCCcee
Q psy5806 393 QSHCAP-KVC--SHICLPNKHRFTCQCPLGLTL 422 (1332)
Q Consensus 393 ~n~C~~-g~C--shlCl~~~~~~~C~C~~G~~L 422 (1332)
.++|.. ..| .+.|.+..++|+|.|+.||..
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 356664 567 458999999999999999974
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=89.68 E-value=39 Score=40.37 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=40.8
Q ss_pred CCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+++||.+. ..+.+..+|.......-......+..+++ .+++||+.+ ..+.|+.+++.+|
T Consensus 241 ~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-------~~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVS-YQGRVAALDLRSGRVLWKRDASSYQGPAV-------DDNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEE-cCCEEEEEECCCCcEEEeeccCCccCceE-------eCCEEEEEC-CCCeEEEEECCCC
Confidence 67899876 45789998885222111111333456678 889999987 5689999999888
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=89.50 E-value=36 Score=37.24 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=125.7
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCc-cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEY-MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~-~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
.+|..+.... ||..++.....+ ++..+.+. +|+.++.|...+++.|-. .+.|+++.-+|.+ -..+..+.. ....
T Consensus 53 ~~LAaa~~qh-vRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTg-seDgt~kIWdlR~-~~~qR~~~~-~spV 127 (311)
T KOG0315|consen 53 KDLAAAGNQH-VRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTG-SEDGTVKIWDLRS-LSCQRNYQH-NSPV 127 (311)
T ss_pred chhhhccCCe-eEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEec-CCCceEEEEeccC-cccchhccC-CCCc
Confidence 3444455566 888888765544 34455655 789999999888877755 4788888888774 222233322 2445
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeCCc-e-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQ-H-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
..+.+.+....|+..|. ++.|.+.|+-.. . .+.+-+.....+.++|+|. |.+..+.... +..+.=+|-+.
T Consensus 128 n~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d-gsml~a~nnk------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD-GSMLAAANNK------GNCYVWRLLNH 199 (311)
T ss_pred ceEEecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCC-CcEEEEecCC------ccEEEEEccCC
Confidence 77888988899988775 568999999644 2 2334444456789999995 4444443222 33444344332
Q ss_pred c-eEEEEe-cCC----CCcceEEEecCCCEEEEEEcCCCeEEEEecCCC-ceEEEEe--ecccceEEEecCCccccccEE
Q psy5806 1170 Y-RTVLVE-EDL----AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR-SRKIVIS--KVAPYGLSVRQSPGKAFIVEL 1240 (1332)
Q Consensus 1170 ~-~~~l~~-~~l----~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~-~~~~~~~--~~~P~glav~~~~~~~~~~~l 1240 (1332)
. ...|.. .++ .+..-.-+.++.+.|- +-+....+..-+.++- ..+..+. ...-.+-++ +.++.||
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F-----S~dg~Yl 273 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF-----SADGEYL 273 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEE-eecCCceEEEEecCCceeeEEEeecCCceEEeeee-----ccCccEE
Confidence 2 222221 111 1111223455544333 2234445555556655 2222222 234455555 2244444
Q ss_pred EEEECCCCEEEEEEecCC
Q psy5806 1241 YWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1241 Ywtd~~~~~V~~~~~~~g 1258 (1332)
+|-...+.+.--+..+|
T Consensus 274 -vTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 274 -VTASSDHTARLWDLSAG 290 (311)
T ss_pred -EecCCCCceeecccccC
Confidence 44445566666666665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=89.37 E-value=26 Score=37.71 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=75.7
Q ss_pred CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC-CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS-QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1067 ~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~-~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
..|++++.. +.....+.....+.+..++-.+.++.+.+... ....|...++++.....+.. .....|..+|...+|
T Consensus 39 ~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEE
Confidence 346666544 33333333223334678888888888776643 34578888988665554532 355689999977777
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
..+..+. ..+.|.--++. ....+....-.....++.+++++.|..+.+
T Consensus 116 ~~~g~~n----~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 116 VLAGFGN----LNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEccC----CCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 7776554 22457766666 333444333344667888888877776654
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.2 Score=40.78 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.6
Q ss_pred eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1084 PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1084 ~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
+..++..|.||++|+..+.||+++...+.|.+...+
T Consensus 49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 446788999999999999999999999999887654
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=88.63 E-value=48 Score=37.53 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=90.0
Q ss_pred ceEEEEEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCC--eEEEEcCCCceEEEEeeCCce
Q psy5806 1046 SSIFFDYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN--NIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~--~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
.+.++|.+ ..|.+.. ...+|+.++|..-.....++ ...+..+.|.++...- +| .+....+.|.+++.+--.
T Consensus 45 sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 45 SITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred ceeEEEec----ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhhe-eeecCCCcEEEEEcCCeE
Confidence 34566665 4666654 44679888877433333333 3466788888886543 45 355567788888876431
Q ss_pred -EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1123 -KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1123 -~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...+..--.+..+|+++| .|+|-.+-.+. ..+..-+| .|..- .+..--..+.-+.+++++.+.|+. .
T Consensus 119 ~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D------~~lr~WNLV~Gr~a--~v~~L~~~at~v~w~~~Gd~F~v~--~ 187 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHP-SGKLALSVGGD------QVLRTWNLVRGRVA--FVLNLKNKATLVSWSPQGDHFVVS--G 187 (362)
T ss_pred EeeeecccccccceeEecC-CCceEEEEcCC------ceeeeehhhcCccc--eeeccCCcceeeEEcCCCCEEEEE--e
Confidence 122433334589999999 68887776554 45555555 34332 222111345557888888777766 4
Q ss_pred CCeEEEEecCC
Q psy5806 1201 NKRIEYCDFFG 1211 (1332)
Q Consensus 1201 ~~~I~~~d~dG 1211 (1332)
.++|..+.++.
T Consensus 188 ~~~i~i~q~d~ 198 (362)
T KOG0294|consen 188 RNKIDIYQLDN 198 (362)
T ss_pred ccEEEEEeccc
Confidence 46677766654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.57 E-value=27 Score=41.52 Aligned_cols=148 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred cceEEEEEeCCCcEEEEE--eCCCC--eEEEEECCCCCCceeEeecC---CCCceeeEEE-ecCCeEEEEcCC--CceEE
Q psy5806 1045 MSSIFFDYHYSKNLIYFA--DMRSG--NLRTFDMSDSTRIKPIPLMN---DTIRDNFVID-WVANNIYYIDSQ--MHTIN 1114 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~s--d~~~~--~I~~~~l~~g~~~~~i~~~~---~~~p~glAvD-w~~~~LY~td~~--~~~I~ 1114 (1332)
.....+.+.+.+++|++. +...+ .|..+++..|....++.... +.....+.+- ..+..++|.... ...|.
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 345677787777756644 43333 35666765433332222222 2222334432 345555554333 45788
Q ss_pred EEeeCCceEEEEecCCCCce-EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEEecCCCCcceEEEecCCC
Q psy5806 1115 VARSDGQHKKILVNDLMEPL-AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLVEEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1115 v~~ldG~~~~~~~~~~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~~~~l~~p~glaiD~~~~ 1192 (1332)
.++++|...+.|..+.-... -+++|+.++.||++.... +.....|++++++ |...+.|....-.+ ..+++.++++
T Consensus 264 ~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~--~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~ 340 (353)
T PF00930_consen 264 LYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD--NPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGK 340 (353)
T ss_dssp EEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG--GTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSS
T ss_pred EEcccccceeccccCceeecccceEcCCCCEEEEEecCC--CCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCC
Confidence 88888887666655544453 478999999999998664 3346789999999 77766655432222 3677777655
Q ss_pred EEE
Q psy5806 1193 RLF 1195 (1332)
Q Consensus 1193 ~LY 1195 (1332)
.+-
T Consensus 341 y~v 343 (353)
T PF00930_consen 341 YYV 343 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.6 Score=33.69 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.7
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEE
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav 1228 (1332)
+++++||+++...+.|..+|........-+. +.+|.+|++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 3678999999999999999985433333334 889999987
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.1e+02 Score=40.67 Aligned_cols=197 Identities=8% Similarity=-0.078 Sum_probs=108.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.++++++..+.+..+-...+.|...++..+..... +....+...+|++++..+.+.++-...+.|.++++. +....
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~-~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE-MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE-ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 3567888765444445555788888888764322222 212234567788876667777887778899999997 43333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce-EEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.+.. ......+++.+..|.++.+-... +.|...++..... ...+...-.....+.+. + +..+++-...+.
T Consensus 613 ~~~~-~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~-~~~lvs~s~D~~ 683 (793)
T PLN00181 613 TIKT-KANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D-SSTLVSSSTDNT 683 (793)
T ss_pred EEec-CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCCCCEEEEEEe-C-CCEEEEEECCCE
Confidence 3432 24566777766667777765443 5677777644321 11121111223345443 3 334445556677
Q ss_pred EEEEecCCC----ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1204 IEYCDFFGR----SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~----~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|...|+.-. ....+.. ......+++ ++.+. +..+-...+.|...++...
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-----s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-----SVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-----cCCCC-EEEEEeCCCEEEEEECCCC
Confidence 777777421 1112222 222344555 11333 4445556778888776544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.63 E-value=10 Score=46.16 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=95.2
Q ss_pred CCceeeEEEecCCeEEEEcC----CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDS----QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~----~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~ 1164 (1332)
....|+...+.++.+|++.. ....+.+.+-||.....+.........=+..|....|.+..... ...++|++.
T Consensus 147 e~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~---~~~~~i~~~ 223 (425)
T COG0823 147 EKLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFEL---GGCPRIYYL 223 (425)
T ss_pred hhhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEec---CCCceEEEE
Confidence 35677777777888887766 34567788888877666533221122222344344444443322 112789999
Q ss_pred ecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC--eEEEEecCCCceEEEEe----ecccceEEEecCCcccccc
Q psy5806 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK--RIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~--~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~ 1238 (1332)
+++...+..+++.. ..-..-++.+++++|-++-..++ .|+.+|++|++...+.+ ..+| +++- ++.
T Consensus 224 ~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~P-s~sp-------dG~ 294 (425)
T COG0823 224 DLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSP-SWSP-------DGS 294 (425)
T ss_pred eccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCc-cCCC-------CCC
Confidence 99998888887632 22223467778888888866544 48899999887555543 1222 2333 566
Q ss_pred EEEEEEC--CCCEEEEEEecCC
Q psy5806 1239 ELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1239 ~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
+||++.- +.-.|++++..++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCC
Confidence 6655543 3346777776654
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=87.08 E-value=23 Score=42.18 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=101.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|+..+.+|--.. ..|.|....+..+.....+.........-|.+..-.|.|..+-+..+.+.++|..|..+..
T Consensus 123 tvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred eeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 467888987776554443 3455655554433333333322222445788888899999888889999999999987665
Q ss_pred -EecCCC-CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcc-eEEEecCCCEEEEEEcCCC
Q psy5806 1126 -LVNDLM-EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN-ELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1126 -~~~~~~-~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~-glaiD~~~~~LY~~d~~~~ 1202 (1332)
....-. .-+||.+.|.+-.|+++--.. -+|+..+......+.-+. ..+|. .+++- +.+....+-...+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~--y~~Plstvaf~-~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLT--YSHPLSTVAFS-ECGTYLCAGNSKG 272 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEeccc------ceEEEeecccccccceee--ecCCcceeeec-CCceEEEeecCCc
Confidence 222222 347899999999999986444 678877765333222222 12332 34444 4455566666789
Q ss_pred eEEEEecCCCc
Q psy5806 1203 RIEYCDFFGRS 1213 (1332)
Q Consensus 1203 ~I~~~d~dG~~ 1213 (1332)
+|..+|+.+..
T Consensus 273 ~~i~YD~R~~k 283 (673)
T KOG4378|consen 273 ELIAYDMRSTK 283 (673)
T ss_pred eEEEEecccCC
Confidence 99999998864
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=86.60 E-value=25 Score=44.23 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=58.5
Q ss_pred EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC-CCeEEEEecCCCc
Q psy5806 1135 AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST-NKRIEYCDFFGRS 1213 (1332)
Q Consensus 1135 ~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~-~~~I~~~d~dG~~ 1213 (1332)
.+++||+++.|||---+. .+ .++..|. ..++..-.=+|||.+++++-|.-+. .+.++ |+|...
T Consensus 238 ~~s~D~~~~lvy~~tGnp-----~p------~~~~~r~---gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w--D~d~~~ 301 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNP-----SP------WNSHLRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEW--DYDGVN 301 (527)
T ss_pred ceeEcCCCCeEEEeCCCC-----CC------CCCCCCC---CCCccceeEEEEccccCCEEEeeeCCCCCCc--cccCCC
Confidence 369999999999986443 22 2232220 1122233348999999999998654 33344 677655
Q ss_pred eEEEEe---ecc--cceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1214 RKIVIS---KVA--PYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1214 ~~~~~~---~~~--P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
..+++. ... |.-+.. .-.|++|+.|..+++...
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~------~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHA------DRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CcEEEEeccCCcEEEEEEEe------CCCceEEEEECCCCceec
Confidence 555553 222 222222 357899999998888753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=86.22 E-value=47 Score=41.70 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
..+|.-+-.+. |..+++.+....-+...........+++.++++..||.+- ++.-|....+..|.-...-....-+-.
T Consensus 31 G~~L~t~~~d~-Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~He~Pv 108 (775)
T KOG0319|consen 31 GQHLYTACGDR-VIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAIHEAPV 108 (775)
T ss_pred CCEEEEecCce-EEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhccCCCe
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
..+|+|+-+ .|--+-...+++.|+++.+.+.+. +..--.-..+|.++|. ..+|--..+ .+...+..-++....
T Consensus 109 i~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~--~~~~lL~sg---~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 109 ITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPH--WNRWLLASG---ATDGTVRVWNLNDKR 182 (775)
T ss_pred EEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCc--cchhheeec---CCCceEEEEEcccCc
Q ss_pred e-EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc------EEEE
Q psy5806 1171 R-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV------ELYW 1242 (1332)
Q Consensus 1171 ~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~------~lYw 1242 (1332)
. ..+.........+|++-.+...+.-. .+...|..-|+--.....+++ -....|.+. ... ..+.
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~-~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~-------l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSV-GRDKVIIVWDLVQYKKLKTLPLYESLESVVR-------LREELGGKGEYII 254 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEe-ccCcEEEEeehhhhhhhheechhhheeeEEE-------echhcCCcceEEE
Q ss_pred EECCCCEEEEEEecCC
Q psy5806 1243 TDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1243 td~~~~~V~~~~~~~g 1258 (1332)
|--+++.+...+.+++
T Consensus 255 TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESG 270 (775)
T ss_pred EecCCceEEEEecccc
|
|
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=86.22 E-value=0.38 Score=35.18 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=18.7
Q ss_pred ccCCCCcceeeeccCC-CceEEeCCCCce
Q psy5806 394 SHCAPKVCSHICLPNK-HRFTCQCPLGLT 421 (1332)
Q Consensus 394 n~C~~g~CshlCl~~~-~~~~C~C~~G~~ 421 (1332)
++|.|++ .|+... ++|+|.|+.||+
T Consensus 4 ~~C~n~g---~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGG---TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTE---EEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCe---EEEeCCCCCEEeECCCCCc
Confidence 4666432 566666 799999999997
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=85.99 E-value=76 Score=38.01 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=112.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEEE-
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKKI- 1125 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~~- 1125 (1332)
..+-|.+.++.++.+-.....+...+++++. .+.-+...-......++-+.+++|.+|.+..+.|+.+++.-. .+..
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 4556788889999887666666666766332 222222223467889999999999999999999999998754 2322
Q ss_pred EecCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE-EEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1126 LVNDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV-LVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1126 ~~~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~-l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+..+ .|-. +..-| .|.++.+..|+ .|-.-++-++.+.. ...+-....+.|.+-.++.+|+=+ +-.+.
T Consensus 193 lnhg--~pVe~vl~lp-sgs~iasAgGn-------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~-sLD~~ 261 (487)
T KOG0310|consen 193 LNHG--CPVESVLALP-SGSLIASAGGN-------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG-SLDRH 261 (487)
T ss_pred ecCC--CceeeEEEcC-CCCEEEEcCCC-------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec-ccccc
Confidence 4333 4544 33344 67787887654 56666777434322 222223446677777777888744 34556
Q ss_pred EEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEE
Q psy5806 1204 IEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVV 1251 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~ 1251 (1332)
+..+|+ ++-+++.+ .....+|++ .+.+..++. -..+|.+.
T Consensus 262 VKVfd~--t~~Kvv~s~~~~~pvLsiav-----s~dd~t~vi-GmsnGlv~ 304 (487)
T KOG0310|consen 262 VKVFDT--TNYKVVHSWKYPGPVLSIAV-----SPDDQTVVI-GMSNGLVS 304 (487)
T ss_pred eEEEEc--cceEEEEeeecccceeeEEe-----cCCCceEEE-ecccceee
Confidence 777663 45555555 444568888 233344444 44555554
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.23 E-value=5.8 Score=49.48 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCc-------------------eEEEEeeCCc-------eEEE-Ee------------
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMH-------------------TINVARSDGQ-------HKKI-LV------------ 1127 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~-------------------~I~v~~ldG~-------~~~~-~~------------ 1127 (1332)
....|++|++++..+.||++.+++. .|..++.++. .-.+ +.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 4568999999999999999855433 5655655543 1111 11
Q ss_pred -----cCCCCceEEEEcCCCcEEEEEecCC
Q psy5806 1128 -----NDLMEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1128 -----~~~~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
..+..|-.|++|| .|.||+.+.+.
T Consensus 428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~ 456 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGG 456 (524)
T ss_pred CcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence 2367899999999 68888876554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.94 E-value=3.1 Score=32.04 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=30.1
Q ss_pred cCCeEEEEcCCCceEEEEeeCCc-eEEEEecCCCCceEEEEc
Q psy5806 1099 VANNIYYIDSQMHTINVARSDGQ-HKKILVNDLMEPLAIAVY 1139 (1332)
Q Consensus 1099 ~~~~LY~td~~~~~I~v~~ldG~-~~~~~~~~~~~P~~iavd 1139 (1332)
.++.||+++...+.|.++++... ....+..+ ..|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 47889999999999999988633 33335444 789999875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.3e+02 Score=38.25 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=126.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC--CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND--TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~--~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+.+.+|++..+ +.++...+|.+....+.+ ...|....+ .....++++-.+..|=+..+..+.+-|+....+.-
T Consensus 267 kvtaa~fH~~t~-~lvvgFssG~f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 267 KVTAAAFHKGTN-LLVVGFSSGEFGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ceeeeeccCCce-EEEEEecCCeeEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 355666776654 455555666655555441 222222222 34567777777888888888888888888875432
Q ss_pred EEEec--CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1124 KILVN--DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1124 ~~~~~--~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
++.. -..+...+++.| .|-+..|.... ++|-.-+...+...+.+.+.-....|+.+-. .++..++-+-.
T Consensus 343 -VlKQQgH~~~i~~l~YSp-Dgq~iaTG~eD------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLD 413 (893)
T KOG0291|consen 343 -VLKQQGHSDRITSLAYSP-DGQLIATGAED------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLD 413 (893)
T ss_pred -eeeccccccceeeEEECC-CCcEEEeccCC------CcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecC
Confidence 2332 256788999999 56666775433 6777778777777777775555566777663 34444455556
Q ss_pred CeEEEEecC-CCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCe
Q psy5806 1202 KRIEYCDFF-GRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDF 1274 (1332)
Q Consensus 1202 ~~I~~~d~d-G~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~ 1274 (1332)
|+|..-|+. +.+-+++.. ...---||+ |+.+.-+.-.....-.|+...+.+| +-..++. |-++|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Qfscvav-----D~sGelV~AG~~d~F~IfvWS~qTG---qllDiLs-GHEgP 480 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-----DPSGELVCAGAQDSFEIFVWSVQTG---QLLDILS-GHEGP 480 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEE-----cCCCCEEEeeccceEEEEEEEeecC---eeeehhc-CCCCc
Confidence 667666663 344333332 333446777 3345555555667888999999998 5444443 34444
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.19 E-value=71 Score=35.13 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=84.5
Q ss_pred EcCCCceEEEEeeCCceEEE--E-------ecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEEEec----CCCc
Q psy5806 1106 IDSQMHTINVARSDGQHKKI--L-------VNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEKVYL----DGSY 1170 (1332)
Q Consensus 1106 td~~~~~I~v~~ldG~~~~~--~-------~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r~~l----dG~~ 1170 (1332)
+|..++.|.+..+|+..+.. + .+++..|+|+++ +|..|.+|+--.+. ++.|....+ .|..
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-----qG~~~Qy~l~d~gnGkv 193 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-----QGDIAQYKLIDQGNGKV 193 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-----CCceeEEEEEecCCceE
Confidence 46667788888888765443 2 235678999988 45555554433222 345666665 2333
Q ss_pred eEEEEecCC---CCcceEEEecCCCEEEEEEcCCCeEEEEecC---CCceEEEEe-------ecccceEEEecCCccccc
Q psy5806 1171 RTVLVEEDL---AFPNELAIDFKQRRLFWADSTNKRIEYCDFF---GRSRKIVIS-------KVAPYGLSVRQSPGKAFI 1237 (1332)
Q Consensus 1171 ~~~l~~~~l---~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d---G~~~~~~~~-------~~~P~glav~~~~~~~~~ 1237 (1332)
...++. .+ .+-.|+..|.+.+.||+++.. --|+++..+ |..++++-. .....||++ -+...-.
T Consensus 194 ~~k~vR-~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGlti--Yy~pnGk 269 (364)
T COG4247 194 GTKLVR-QFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTI--YYGPNGK 269 (364)
T ss_pred cceeeE-eeecCCcccceeeccccceEEEeecc-ceeeecccCCCCCCccchhhhhcCchhhcccccccEE--EEcCCCc
Confidence 333332 11 245699999999999999754 469988775 444555543 234567777 1111114
Q ss_pred cEEEEEECCCCEEEEEEecC
Q psy5806 1238 VELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1238 ~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
|+|.-+..++++-..+..++
T Consensus 270 GYL~aSSQGnNtya~y~ReG 289 (364)
T COG4247 270 GYLLASSQGNNTYAAYTREG 289 (364)
T ss_pred EEEEEecCCCceEEEEEeeC
Confidence 66666666666655555544
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=83.59 E-value=37 Score=38.12 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=82.3
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCc-eeEee-cCC----------CCceeeEEEecCCe-EEEEcCCCceEEEEeeCCce
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRI-KPIPL-MND----------TIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~-~~~----------~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~ 1122 (1332)
++.+|+--.+...|.|++|.+..-. +..+. .+. .+=-.||+|..+=. ||-+..+.+.|.+..+|-..
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~t 157 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPET 157 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCccc
Confidence 3789998888899999998854433 22221 111 12247999943322 44445556678889888554
Q ss_pred EEE---EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcE-EEEecCCCc-eE--EEEecCCCCcceEEEecCCCEEE
Q psy5806 1123 KKI---LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKI-EKVYLDGSY-RT--VLVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1123 ~~~---~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I-~r~~ldG~~-~~--~l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
..+ ..+.+.++..-.---.-|.||.++... . ...+| +..++.-.. .. +.+.........|.-+|.+++||
T Consensus 158 L~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~--~-~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY 234 (250)
T PF02191_consen 158 LSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYD--T-RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLY 234 (250)
T ss_pred CceEEEEEeccCchhhcceeeEeeEEEEEEECC--C-CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEE
Confidence 333 223444433322222368999998765 1 11333 344443221 11 11222334455688899999999
Q ss_pred EEEcCCCeEEEEec
Q psy5806 1196 WADSTNKRIEYCDF 1209 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~ 1209 (1332)
.=|-+ .+..+++
T Consensus 235 ~wd~G--~~v~Y~v 246 (250)
T PF02191_consen 235 AWDNG--YQVTYDV 246 (250)
T ss_pred EEECC--eEEEEEE
Confidence 87653 4444443
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=83.51 E-value=94 Score=35.98 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=122.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce---E
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH---K 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~---~ 1123 (1332)
+..+.+......+-=+...+..|..-+.+.|.....+ ..+++...-|-..+.+..||.|.- .....+....-.- +
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~-davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATC-DAVFRLWQENQSWTKER 275 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecc-cceeeeehhcccceecc
Confidence 4577777776655556666777887777655555444 345556666777777777776643 2344455443322 2
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---------EEEEecCC-------------CC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---------TVLVEEDL-------------AF 1181 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---------~~l~~~~l-------------~~ 1181 (1332)
-++..+ +...-.-+|+..+|.++-.++ +.|++...++... .+++..++ +.
T Consensus 276 w~lgsg--rvqtacWspcGsfLLf~~sgs------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge 347 (445)
T KOG2139|consen 276 WILGSG--RVQTACWSPCGSFLLFACSGS------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE 347 (445)
T ss_pred eeccCC--ceeeeeecCCCCEEEEEEcCC------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence 223223 666777899999999998887 8899999877542 22221122 23
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEE-------EecCCCceEEEE--e---ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEY-------CDFFGRSRKIVI--S---KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~-------~d~dG~~~~~~~--~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
+..|+.|+.+.+|-++-.+.+.|+- +|..-+....+. . +.+|.-|+++-.+ .++.|.-.-|.+|.
T Consensus 348 aq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~---n~g~lLsiaWsTGr 424 (445)
T KOG2139|consen 348 AQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK---NEGRLLSIAWSTGR 424 (445)
T ss_pred cceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc---cCCcEEEEEeccCc
Confidence 6679999999999888776664442 222111111122 1 6778888772222 56677777788899
Q ss_pred EEEEEec
Q psy5806 1250 VVIAREK 1256 (1332)
Q Consensus 1250 V~~~~~~ 1256 (1332)
+-++..+
T Consensus 425 iq~ypl~ 431 (445)
T KOG2139|consen 425 IQRYPLT 431 (445)
T ss_pred eEeeeeE
Confidence 8888764
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=83.50 E-value=1e+02 Score=36.30 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=112.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~ 1124 (1332)
.+..|.++|.+++|.-- .....+..-+...|..... ...+ ..++..-|--+.+-. +++.+....|..+++||....
T Consensus 271 ~V~yi~wSPDdryLlaC-g~~e~~~lwDv~tgd~~~~-y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLAC-GFDEVLSLWDVDTGDLRHL-YPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ceEEEEECCCCCeEEec-CchHheeeccCCcchhhhh-cccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhh
Confidence 35678889988766432 2333455556553333222 2222 123444444444444 577777788999999998543
Q ss_pred EEecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1125 ILVND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1125 ~~~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
- +.+ ......||+.+...+|+-.... .+|.-.+.......-++.+. .....+.|. +++++...+...+
T Consensus 348 ~-W~gvr~~~v~dlait~Dgk~vl~v~~d-------~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 348 N-WEGVRDPKVHDLAITYDGKYVLLVTVD-------KKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQ 417 (519)
T ss_pred c-ccccccceeEEEEEcCCCcEEEEEecc-------cceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccC
Confidence 3 222 2456789998877788777643 45666666544443344432 334567777 5677788888888
Q ss_pred eEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1203 RIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|.--|+. .++ .+.. .+|-.|-=+..|=-.-.++.+.-+-++.++|+.-++.+| +-+.++.
T Consensus 418 ei~LWDl~-e~~-lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~Ls 479 (519)
T KOG0293|consen 418 EIHLWDLE-ENK-LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLS 479 (519)
T ss_pred eeEEeecc-hhh-HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeec
Confidence 88888886 221 1111 111111100000001122233334467788888888887 5444443
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=83.47 E-value=38 Score=37.86 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=82.2
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCc-eeEee-cC----------CCCceeeEEEecCCe-EEEEcCCCceEEEEeeCCceE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRI-KPIPL-MN----------DTIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~-~~----------~~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
+.||+.-.....|.|++|.+.+-. +..+. .+ ..+=-.||+|..+=. ||-+..+.+.|.+.+||-...
T Consensus 84 gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL 163 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATL 163 (255)
T ss_pred ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccc
Confidence 789998877889999999854432 22221 11 112247999954333 455566678899899986544
Q ss_pred EE--Ee-cCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEE-EEecCCCceEE---EEecCCCCcceEEEecCCCEEE
Q psy5806 1124 KI--LV-NDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIE-KVYLDGSYRTV---LVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1124 ~~--~~-~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~-r~~ldG~~~~~---l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
.+ .+ +...++.+ =|+= .-|.||.++... ....+|. ..+...+.... .+......-..|.-.+.+++||
T Consensus 164 ~ve~tW~T~~~k~sa~naFm-vCGvLY~~~s~~---~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY 239 (255)
T smart00284 164 TIENTWITTYNKRSASNAFM-ICGILYVTRSLG---SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLY 239 (255)
T ss_pred eEEEEEEcCCCcccccccEE-EeeEEEEEccCC---CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEE
Confidence 44 22 33333332 1121 258999998633 2234444 33444332211 1222223334477788999999
Q ss_pred EEEcCCCeEEEEec
Q psy5806 1196 WADSTNKRIEYCDF 1209 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~ 1209 (1332)
.=|- +.+..+++
T Consensus 240 ~wdn--g~~l~Y~v 251 (255)
T smart00284 240 AWNN--GHLVHYDI 251 (255)
T ss_pred EEeC--CeEEEEEE
Confidence 7654 44555544
|
|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=83.27 E-value=0.81 Score=33.64 Aligned_cols=25 Identities=32% Similarity=0.902 Sum_probs=20.4
Q ss_pred CCCc--cccccCCCCccccCCCCeeEc
Q psy5806 977 GGCS--HLCLRNPTNFTCACPTGILLS 1001 (1332)
Q Consensus 977 GgCs--hlCl~~p~~~~C~Cp~g~~l~ 1001 (1332)
+.|. +.|..+++++.|.|+.||...
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3555 789999989999999999753
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=83.08 E-value=1.1e+02 Score=36.33 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=106.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
+.++..++.+.++.|++ +.+.+--.++.+|....++..... -....+++.+ .+.||.+....+.+.++++.......
T Consensus 306 V~~ls~h~tgeYllsAs-~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSAS-NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ceeeeeccCCcEEEEec-CCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccc
Confidence 56777888888888887 444443334454544444433211 1346677774 68888888888899999997543222
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+..-......|++.. +||-..+.... ..|.--+|--. +...+...+....+.+.+|..+..|-.+ ...=.
T Consensus 384 ~Fpght~~vk~i~FsE-NGY~Lat~add------~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~ 455 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSE-NGYWLATAADD------GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQ 455 (506)
T ss_pred cCCCCCCceeEEEecc-CceEEEEEecC------CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeE
Confidence 322234567888876 88776666544 33544455222 2233322222346778899777766555 33333
Q ss_pred EEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEE
Q psy5806 1204 IEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~ 1253 (1332)
|..++-...+.+.+.. ...-.++.+ -+..-|.++-..++++++
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~F-------g~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRF-------GEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeee-------cccceEEeeccchhheEE
Confidence 4444433444444433 223345555 444456665555555443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=1.5e+02 Score=37.52 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=90.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+..++|++....++.+-...+.|...++..+.....+ .....+..+++++.+..| .+....+.|.++++... ...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--ecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCCCcEEE
Confidence 46788999988777776667788998898754432222 123457888888766655 44445668999998743 333
Q ss_pred EEecCCCCc-eEEEE-----cCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceE--EEecCCCEEE
Q psy5806 1125 ILVNDLMEP-LAIAV-----YPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNEL--AIDFKQRRLF 1195 (1332)
Q Consensus 1125 ~~~~~~~~P-~~iav-----dp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~gl--aiD~~~~~LY 1195 (1332)
.+.. .... ...++ .+..++|.-+.... .....|..-++... .....+.-+ ..+..| ..|+..+.||
T Consensus 204 tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 204 SFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEE
Confidence 2321 1111 11222 24445555544322 01123444455421 111122111 122233 4677889999
Q ss_pred EEEcCCCeEEEEecCCC
Q psy5806 1196 WADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~ 1212 (1332)
.+=.+.+.|...++...
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99888999999998643
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=82.13 E-value=37 Score=37.43 Aligned_cols=134 Identities=16% Similarity=0.059 Sum_probs=80.0
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
-.=+|||..+++|||-..-..+|+ ++.. +..++ |++-=.+|.|||-+... ..+++....-++.
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE-----~sa~--vvgdf-----VV~GCy~g~lYfl~~~t-----Gs~~w~f~~~~~v 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIE-----CSAI--VVGDF-----VVLGCYSGGLYFLCVKT-----GSQIWNFVILETV 95 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceee-----eeeE--EECCE-----EEEEEccCcEEEEEecc-----hhheeeeeehhhh
Confidence 345899999999999765555664 2211 22232 66666789999999765 3466665443322
Q ss_pred eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCc-cccccEEEEEECCCCE
Q psy5806 1171 RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPG-KAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1171 ~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~-~~~~~~lYwtd~~~~~ 1249 (1332)
. . --.+|++++.||- -++++.....|+....- +...+-|-++-+ ||- +.-.+.||+|- .+|.
T Consensus 96 k--------~---~a~~d~~~glIyc-gshd~~~yalD~~~~~c--VykskcgG~~f~--sP~i~~g~~sly~a~-t~G~ 158 (354)
T KOG4649|consen 96 K--------V---RAQCDFDGGLIYC-GSHDGNFYALDPKTYGC--VYKSKCGGGTFV--SPVIAPGDGSLYAAI-TAGA 158 (354)
T ss_pred c--------c---ceEEcCCCceEEE-ecCCCcEEEecccccce--EEecccCCceec--cceecCCCceEEEEe-ccce
Confidence 1 1 1356777777665 46778888877753221 111111111111 111 22578899987 5689
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
|.+++|.++
T Consensus 159 vlavt~~~~ 167 (354)
T KOG4649|consen 159 VLAVTKNPY 167 (354)
T ss_pred EEEEccCCC
Confidence 999999877
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=82.09 E-value=1e+02 Score=35.44 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=106.7
Q ss_pred EEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEEcC----CCceEEEEeeCCc
Q psy5806 1048 IFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYIDS----QMHTINVARSDGQ 1121 (1332)
Q Consensus 1048 ~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~td~----~~~~I~v~~ldG~ 1121 (1332)
.+++.++ ....|.|+-........++..+|.....+.......-+| =+++..++.||.|.. ..+.|-|.+....
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3444454 223344444333445555555443333332222222222 345667899999843 3678999999966
Q ss_pred eEEE--EecCCCCceEEEEcCCCcEEEEEecCCCC--CCC---------CCcEEEE-ecCCCceEEE-EecCCC--Ccce
Q psy5806 1122 HKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYD--NSP---------TTKIEKV-YLDGSYRTVL-VEEDLA--FPNE 1184 (1332)
Q Consensus 1122 ~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~--~~~---------~~~I~r~-~ldG~~~~~l-~~~~l~--~p~g 1184 (1332)
.+++ ..+.--.|..|.+.|....|.+++-|-.. +.+ .+.|..+ ..+|.-.... +..++. ...-
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6655 54544679999999966599999855311 111 1334443 2234322221 111111 2334
Q ss_pred EEEecCCCEEEEEEcCCCe-------EEEEecCCCceEEE-Ee-------ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1185 LAIDFKQRRLFWADSTNKR-------IEYCDFFGRSRKIV-IS-------KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~-------I~~~d~dG~~~~~~-~~-------~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
|+++.+ +.+.++-...+. |...+. |+..+.+ .+ ....-+|++ +..++.+..|-...+.
T Consensus 168 La~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~-----~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 168 LAVDGD-GTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAA-----DRDGRLIAVTSPRGGR 240 (305)
T ss_pred EEecCC-CcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEE-----eCCCCEEEEECCCCCE
Confidence 677643 555555443221 111111 1111111 11 234456777 3445689999999999
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
+...+..+|
T Consensus 241 ~~~~d~~tg 249 (305)
T PF07433_consen 241 VAVWDAATG 249 (305)
T ss_pred EEEEECCCC
Confidence 999998888
|
|
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=82.03 E-value=26 Score=46.74 Aligned_cols=35 Identities=34% Similarity=0.971 Sum_probs=27.2
Q ss_pred cccCCCCccee--eeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|-|..|.|+. .|++.-++|+|.||.||- ++.|..
T Consensus 1501 k~fCdsg~C~n~g~CvnrWg~~~C~CP~~fg----gk~c~~ 1537 (2531)
T KOG4289|consen 1501 KNFCDSGQCSNGGTCVNRWGGFSCECPLGFG----GKGCCQ 1537 (2531)
T ss_pred hcccCCCccCCCCeeecccCcEeecCccccC----Ccchhh
Confidence 45666666753 899999999999999985 666754
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=82.02 E-value=77 Score=37.17 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=97.7
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
....|+..+..+.| +|......+...+.+ |..+.....+ ...+...|--| .|.=|++... ...|..-++|
T Consensus 271 ~V~yi~wSPDdryL-laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~------dr~i~~wdlD 342 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYL-LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSP------DRTIIMWDLD 342 (519)
T ss_pred ceEEEEECCCCCeE-EecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCC------CCcEEEecCC
Confidence 34557777777877 455445557777777 5444443333 25677788888 5666777543 3779999999
Q ss_pred CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC
Q psy5806 1168 GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
|.....--.........|++.++++.+|.... ..+|.-++.....-+-+++ -....++.+ .-++.+...+-.
T Consensus 343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~~dr~lise~~~its~~i------S~d~k~~LvnL~ 415 (519)
T KOG0293|consen 343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREARVDRGLISEEQPITSFSI------SKDGKLALVNLQ 415 (519)
T ss_pred cchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhhhhhhccccccCceeEEEE------cCCCcEEEEEcc
Confidence 97743332222345568999999999998874 4578777775443332444 444456666 235667777878
Q ss_pred CCEEEEEEec
Q psy5806 1247 AMSVVIAREK 1256 (1332)
Q Consensus 1247 ~~~V~~~~~~ 1256 (1332)
.++|+.-|..
T Consensus 416 ~qei~LWDl~ 425 (519)
T KOG0293|consen 416 DQEIHLWDLE 425 (519)
T ss_pred cCeeEEeecc
Confidence 8888877764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=81.66 E-value=1.5e+02 Score=37.37 Aligned_cols=69 Identities=7% Similarity=-0.133 Sum_probs=45.6
Q ss_pred eEEEecCCCEEEEEEcC---------------CCeEEEEecCCCceEEEEe-----------ecccceEEEecCCccccc
Q psy5806 1184 ELAIDFKQRRLFWADST---------------NKRIEYCDFFGRSRKIVIS-----------KVAPYGLSVRQSPGKAFI 1237 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~---------------~~~I~~~d~dG~~~~~~~~-----------~~~P~glav~~~~~~~~~ 1237 (1332)
.+++|++.++|||--.+ ++.|...|.+....+-... ...|.=+.+ +.+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~------~~~ 311 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL------KKD 311 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe------ccC
Confidence 36999999999998633 3478888887433222221 234433433 123
Q ss_pred c---EEEEEECCCCEEEEEEecCC
Q psy5806 1238 V---ELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1238 ~---~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+ .+...-..++-++.+|..+|
T Consensus 312 G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 312 GKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CcEEEEEEEeCCCceEEEEECCCC
Confidence 3 37767778999999999998
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=81.62 E-value=92 Score=34.54 Aligned_cols=227 Identities=14% Similarity=0.018 Sum_probs=119.8
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
+..+.+++.+.-+|.+-.....|+..++..+.....+...+ ++ .-++..+.++.+-+.+. .+.|..++.....+..-
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-en-i~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-EN-INITWSPDGEYIAVGNK-DDRITFIDARTYKIVNE 143 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cc-eEEEEcCCCCEEEEecC-cccEEEEEecccceeeh
Confidence 45667888777788877777888888876444333333211 11 12223333333333332 33454444432222211
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
........-|+-. ..+.|||...|. +.|+....-.-.+..-+...-..--.|.+|++++ |+|-...+.+.+
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Fflt~Gl------G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvS 214 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFLTNGL------GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVS 214 (313)
T ss_pred hcccceeeeeeec-CCCCEEEEecCC------ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceee
Confidence 1222345667777 567888887665 6777766653333222221112222466777665 666655555544
Q ss_pred E-ecCCCceEEEEe-eccc-ceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCC
Q psy5806 1207 C-DFFGRSRKIVIS-KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISAS 1283 (1332)
Q Consensus 1207 ~-d~dG~~~~~~~~-~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 1283 (1332)
. |++---.+-.++ +..| ..|++ .+++++.=+-.+..-|-.++..|| ..+..+.- .+++--++-++.
T Consensus 215 LWD~~ELiC~R~isRldwpVRTlSF------S~dg~~lASaSEDh~IDIA~vetG---d~~~eI~~--~~~t~tVAWHPk 283 (313)
T KOG1407|consen 215 LWDVDELICERCISRLDWPVRTLSF------SHDGRMLASASEDHFIDIAEVETG---DRVWEIPC--EGPTFTVAWHPK 283 (313)
T ss_pred ccChhHhhhheeeccccCceEEEEe------ccCcceeeccCccceEEeEecccC---CeEEEeec--cCCceeEEecCC
Confidence 3 333222222233 4444 46666 345665556678889999999999 55555543 344555555665
Q ss_pred CCCCCCCCCCCCC
Q psy5806 1284 KQLTWNPCAQDNG 1296 (1332)
Q Consensus 1284 ~q~~~n~C~~~ng 1296 (1332)
+....-.|...|+
T Consensus 284 ~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 284 RPLLAYACDDKDG 296 (313)
T ss_pred CceeeEEecCCCC
Confidence 5445555555443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=81.25 E-value=12 Score=44.62 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=52.9
Q ss_pred CCceEEEEe-cCC-CeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCC----CCeEEEEec
Q psy5806 553 SEPRDIAVN-PIG-GIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVG----LKTIEFTNL 626 (1332)
Q Consensus 553 ~~P~~iavd-p~~-G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~----~~~I~~~~~ 626 (1332)
.....+.+- +.. +++++++...-.+|....++|...+.|......--.-+.+|..+++||+.-.. ...++++++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 344455543 444 45555554345789999999998665544332211357889999999999775 458999999
Q ss_pred C-CCceEEE
Q psy5806 627 D-GTRKQTL 634 (1332)
Q Consensus 627 d-G~~~~~~ 634 (1332)
+ |...+.|
T Consensus 315 ~~~~~~~~L 323 (353)
T PF00930_consen 315 DSGGEPKCL 323 (353)
T ss_dssp TETTEEEES
T ss_pred CCCCCeEec
Confidence 9 7655544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=80.63 E-value=68 Score=35.37 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=98.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEe--cCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW--VANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw--~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
...++++......+-.+-.+.|+++..++.-.+. .|....-..-+=.++|| +.|..+++.+..++|...+.+ +..
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCc--chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 3567788766555555556888888887442211 22211222334456666 467788888888999888887 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEec--CCCEEEEEEcC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF--KQRRLFWADST 1200 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~--~~~~LY~~d~~ 1200 (1332)
..+..+...-.+..+.+|.-+.||-+..+. +.-+|+-++..|+...+.+. + -..|..|. -+..+..+-..
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd----~~l~lwdvr~~gk~~~i~ah-~---~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGD----GTLRLWDVRSPGKFMSIEAH-N---SEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCC----ceEEEEEecCCCceeEEEec-c---ceeEeecccccCCcEEEecCC
Confidence 455545555688899999999998888776 56788888888877653332 1 23466665 33445555455
Q ss_pred CCeEEEEecC
Q psy5806 1201 NKRIEYCDFF 1210 (1332)
Q Consensus 1201 ~~~I~~~d~d 1210 (1332)
.+.|..-|+.
T Consensus 212 d~~vr~wDir 221 (311)
T KOG0277|consen 212 DNLVRGWDIR 221 (311)
T ss_pred CceEEEEehh
Confidence 6666666663
|
|
| >PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet | Back alignment and domain information |
|---|
Probab=80.52 E-value=1.4 Score=32.13 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=20.6
Q ss_pred CCCccccccCCCCCceeeCCCCccccCCC
Q psy5806 671 GGCSHLCLIAPKDGIRCVCPAGNLLREDR 699 (1332)
Q Consensus 671 ggCs~lCl~~~~~~~~C~Cp~g~~l~~d~ 699 (1332)
..|+..|-+.. ..+|.||.||.|+++.
T Consensus 6 t~CpA~CDpn~--~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 6 TECPADCDPNS--PGQCFCPEGYILDEGS 32 (34)
T ss_pred ccCCCccCCCC--CCceeCCCceEecCCc
Confidence 46788886644 5699999999997653
|
Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane |
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.1e+02 Score=35.32 Aligned_cols=174 Identities=6% Similarity=-0.003 Sum_probs=95.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
+.-+..+|+||.+ .-|.+.....+|...++..|.-. ..+.--+....|+||....-.||- -.....|.-+||.-...
T Consensus 151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs-~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFS-AGEDKQVKCWDLEYNKV 227 (460)
T ss_pred cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEE-ecCCCeeEEEechhhhh
Confidence 3457899999984 56777778888999998844322 222224568899999965555643 34456777777753321
Q ss_pred -EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 -KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 -~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
+.-..-+...+.|+++|....|+-..... ..+|+ +|-.......+..--.....+..-+.+..+|=. +...
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDs-----t~RvW--DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~-S~D~ 299 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDS-----TIRVW--DIRTRASVHVLSGHTNPVASVMCQPTDPQVITG-SHDS 299 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcc-----eEEEe--eecccceEEEecCCCCcceeEEeecCCCceEEe-cCCc
Confidence 11234456789999999766664433221 23333 443333222222111122233333344555533 4455
Q ss_pred eEEEEecC-CCceEEEEe-ecccceEEE
Q psy5806 1203 RIEYCDFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1203 ~I~~~d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
.|.--|+. |....++.. ...-.+|++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~l 327 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCL 327 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEec
Confidence 56655653 444444444 444455555
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=80.08 E-value=1.7e+02 Score=36.57 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=108.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+..++|++..+.++++-...+.|...++..+.....+ .........|++.+.+..| ++-...+.|.++++. |+...
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lL-atgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLL-CTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEE-EEecCCCEEEEEECCCCcEEE
Confidence 46789999876556666667889999998754333222 2223457788888755544 565667799999986 44333
Q ss_pred EEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEEecCCC-CcceEEEecCCCEEEEEEcCC
Q psy5806 1125 ILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLVEEDLA-FPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1125 ~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~~~~l~-~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.+... -.....+...+..+.|+-+.... .....|..-++.... ...+...+.. ...-..+|++++.||.+-.+.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~---s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSK---SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCC---CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 33221 11233455666556665443221 112345555554222 1112211111 111235688888899886678
Q ss_pred CeEEEEecCCCceEEEEe--eccc-ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1202 KRIEYCDFFGRSRKIVIS--KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~~~--~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.|...|+.......... ...| .|+++ .-. +-.|....+|.|+-|.+.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~s~~~~~g~~~-------~pk--~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYSSVEPHKGLCM-------MPK--WSLDTRKCEIARFYALTY 332 (493)
T ss_pred CeEEEEEeeCCceEEEeeccCCCCCcceEe-------ccc--ccccccceeeeEEEEecC
Confidence 889999997544322222 2222 45555 221 224445556666665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1332 | ||||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 1e-123 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 1e-104 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 7e-93 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 1e-123 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 1e-104 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 5e-93 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 5e-90 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 4e-78 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 4e-76 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 3e-89 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 7e-78 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 1e-75 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 4e-89 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 8e-78 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 1e-75 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 3e-81 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 3e-51 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 4e-42 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 5e-81 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 3e-51 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 4e-42 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-70 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-52 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 4e-46 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-34 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-67 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 5e-51 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-45 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 1e-34 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 4e-53 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 4e-41 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 4e-27 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 6e-52 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 1e-40 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 5e-27 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 3e-51 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 7e-37 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 3e-23 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 4e-51 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 4e-41 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 1e-27 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 6e-51 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 2e-41 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 1e-27 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 1e-26 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 4e-26 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 3e-25 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 1e-15 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 2e-06 | ||
| 2lgp_A | 94 | Solution Structure Of La45 From Ldlr Length = 94 | 2e-08 | ||
| 2fcw_B | 80 | Structure Of A Complex Between The Pair Of The Ldl | 1e-05 | ||
| 1f5y_A | 85 | Nmr Structure Of A Concatemer Of The First And Seco | 3e-05 | ||
| 1ajj_A | 37 | Ldl Receptor Ligand-Binding Module 5, Calcium-Coord | 4e-04 |
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94 | Back alignment and structure |
|
| >pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80 | Back alignment and structure |
|
| >pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85 | Back alignment and structure |
|
| >pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating Length = 37 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 475 bits (1224), Expect = e-153
Identities = 220/597 (36%), Positives = 328/597 (54%), Gaps = 59/597 (9%)
Query: 163 RVSLSNKK--YTAIIRNLHNVLAVDYHYKKNLLVW------------------NTHIVHT 202
V +N K T ++ L + AVD+ + L+ W ++V +
Sbjct: 22 LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 81
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ S L+ DW+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F+
Sbjct: 82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 141
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WTDWG+ PKIER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LD
Sbjct: 142 YWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G+ RQ V+ LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I
Sbjct: 202 GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 261
Query: 383 SYHPHRQPNYQSHCAPKV--CSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLI 438
++ RQPN + C CSH+CL P K + C CP G+ L + K+C + ELL+
Sbjct: 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321
Query: 439 YARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
AR+ DLR L P T VL + +++ +AI ++ +YW D E I R+ I+G
Sbjct: 322 LARRTDLRRISLDTPDFTD-IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380
Query: 499 TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDI 558
+ V+ P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I
Sbjct: 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAI 440
Query: 559 AVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGL 618
++P+ G MYW WG++ KIE A +DGS R +L + SL P GLA+D + ++YW +
Sbjct: 441 VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT 500
Query: 619 KTIEFTNLDGTRKQTLIALHHL---------------------------------KVMTK 645
IE N DGT ++ L+ ++ +
Sbjct: 501 DKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ 560
Query: 646 VVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
+ L + + R ++PC E NGGCSHLCL P G+RC CP G L D +TC
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP-QGLRCACPIGFELISDMKTC 616
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 440 bits (1131), Expect = e-140
Identities = 214/620 (34%), Positives = 311/620 (50%), Gaps = 48/620 (7%)
Query: 429 CSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVEN 488
LL+YA ++DLR+ T + + V ++ A+ + ++ +YW+DV
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDAT--NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSE 61
Query: 489 GEINRAHINGT-FQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLL 547
I R N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +L
Sbjct: 62 EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121
Query: 548 FWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLE 607
FWQ L +PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E
Sbjct: 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE 181
Query: 608 NSRLYWANVGLKTIEFTNLDGTRKQTLIALHHL--------------------------- 640
+LYWA+ L I +NLDGT +Q ++
Sbjct: 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 241
Query: 641 -------KVMTKVVGLTDI-DIFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPA 691
++ + + DI +R+ T+PC +NGGCSHLCL++P K +C CP
Sbjct: 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 301
Query: 692 GNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNE 751
G L E+ +TC + ++ LL+++ +R+ISLD IVL L ++ ++D D
Sbjct: 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
YIYW+D + I R D +G + +V + + IAVD + R +YWTD I V+ +
Sbjct: 362 YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421
Query: 812 DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETE 870
+G K+L +L PR+IV+ +G M W DW +IE A +DG++R V T
Sbjct: 422 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE----IPKIERAALDGSDRVVLVNTS 477
Query: 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ-SHPYTLTVLDYYVYW 929
+ WP+ LA+DY D K+YW D IE + + H + T+L YVYW
Sbjct: 478 LGWPNGLALDY-DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYW 536
Query: 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRA--AQNISFPNACGSNNGGCSHLCLRNP 987
TD Q I R +K + V Q+ ++A + N C NGGCSHLCL P
Sbjct: 537 TDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP 596
Query: 988 TNFTCACPTGILLSADRRSC 1007
CACP G L +D ++C
Sbjct: 597 QGLRCACPIGFELISDMKTC 616
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 393 bits (1009), Expect = e-122
Identities = 205/629 (32%), Positives = 312/629 (49%), Gaps = 34/629 (5%)
Query: 702 CSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEK 761
+ + LL + +R + + + + L+ A+VD + IYWSD+SE+
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDAT-NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Query: 762 TIERVRFDMTGR-ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820
I+R F+ T + +VV+ L + +A D +G K+YWTD I VS++DG KVLF
Sbjct: 63 AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 122
Query: 821 WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAI 879
W L +PR+I + G M W DW +IE A MDG++R + +E+ WP+ L +
Sbjct: 123 WQELDQPRAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFIIINSEIYWPNGLTL 178
Query: 880 DYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIY 938
DY + KLYW D + I L T R HP+ LT+ + +YWTD I
Sbjct: 179 DY-EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSIL 237
Query: 939 RANKYDVKDIVEFA-QVDRPWLVRA---AQNISFPNACGSNNGGCSHLCLRNPTN--FTC 992
NKY + + E + P + A + + N CG +NGGCSHLCL +P + C
Sbjct: 238 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297
Query: 993 ACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDY 1052
ACPTG+ L + ++C E LL R +RRISLDT D + L + +I DY
Sbjct: 298 ACPTGVKLLENGKTCKDGATELLLLARR-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDY 356
Query: 1053 HYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHT 1112
+ IY+ D +R + S + D +DWVA N+Y+ D+
Sbjct: 357 DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP-DGIAVDWVARNLYWTDTGTDR 415
Query: 1113 INVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171
I V R +G +KIL+ DL EP AI + P G ++++ WG KIE+ LDGS R
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG-----EIPKIERAALDGSDR 470
Query: 1172 TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQS 1231
VLV L +PN LA+D+ + +++W D+ +IE + G R++++ P+
Sbjct: 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL 530
Query: 1232 PGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPC 1291
+YWTDW+ S+ + + + +V I D + +KA + + + NPC
Sbjct: 531 GDY-----VYWTDWQRRSIERVHK--RSAEREV--IIDQLPDLMGLKATNVHRVIGSNPC 581
Query: 1292 AQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
A++NGGCSHLC Y+ + G C CP E
Sbjct: 582 AEENGGCSHLCLYRPQ--GLRCACPIGFE 608
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 257 bits (657), Expect = 1e-73
Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 22/304 (7%)
Query: 147 HCPRGEEGPDERHCPKRVSLSNKKYTAI---IRNLHNVLAVDYHYKKNLLVW-------- 195
R +R+SL +T I + ++ + +A+DY + + W
Sbjct: 314 DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAI 373
Query: 196 ---------NTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANN 246
+ +V + ++VDWV ++WTDT R+E L+G RKILI+ +
Sbjct: 374 RRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED 433
Query: 247 IDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRL 306
+++PRA+++ P +++WTDWG+ PKIER +DGS+R V++ ++ WPNGL +D++E ++
Sbjct: 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKI 493
Query: 307 YWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGR 366
YW +AK IE + DG+ R+ ++ +PH FG TL D+V+WTDW +SI +K +
Sbjct: 494 YWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE 553
Query: 367 NIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK-VCSHICLPNKHRFTCQCPLGLTLSPD 425
+ + L M +++ + HR CSH+CL C CP+G L D
Sbjct: 554 R-EVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISD 612
Query: 426 NKSC 429
K+C
Sbjct: 613 MKTC 616
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 176 bits (446), Expect = 3e-46
Identities = 84/311 (27%), Positives = 151/311 (48%), Gaps = 17/311 (5%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
LLY +R +R + T+ + D+ +S LIY++D+ ++ +
Sbjct: 11 LLLYANR-RDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 1074 MSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLME 1132
+ + ++ + + D DW+ +Y+ DS+ + I V+ DG +K+L +L +
Sbjct: 69 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 128
Query: 1133 PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192
P AIA+ P G ++++ WG KIE+ +DGS R +++ ++ +PN L +D++++
Sbjct: 129 PRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 183
Query: 1193 RLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252
+L+WAD+ I + G +R+ V+ P+ ++ LYWTDW S++
Sbjct: 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI-----LYWTDWSTHSIL- 237
Query: 1253 AREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCFYKGRTKGY 1311
TG+ + I S+ ++I A S +Q NPC DNGGCSHLC Y
Sbjct: 238 -ACNKYTGE-GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY 295
Query: 1312 VCGCPDDLEPN 1322
C CP ++
Sbjct: 296 QCACPTGVKLL 306
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-142
Identities = 184/610 (30%), Positives = 296/610 (48%), Gaps = 68/610 (11%)
Query: 163 RVSLSNKKYTAII--RNLHNVLAVDYHYKKNLLVW-----------------NTHIVHTG 203
R+SL I + A+D+ N + W H+V G
Sbjct: 19 RISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG 78
Query: 204 MQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVF 263
+ ++VDW+ ++W DT R+E LDG++R++L+ ++D PRA+ + P + F++
Sbjct: 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 138
Query: 264 WTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDG 323
WT+WG PKI+R MDGS R ++ N+ NGLTID+ + RLYWT+ + IESS++ G
Sbjct: 139 WTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 324 SRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRS 383
R +VI LPHPFG+T Y+D+++WTDW +SI ANK +G+N + L + M+I
Sbjct: 198 LNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 384 YHPHRQPNYQS-HCAPKVCSHICLPN-KHRFTCQCPLGLTLSPDNKSCSESPEELLIYAR 441
+H RQ + + CSH+CL F C CP +L+ DN++CS LL +
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316
Query: 442 QKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQ 501
R+ + + + +LP+ ++++V AI ++ + LYW D I +A +G+
Sbjct: 317 SAINRMV--IDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG 374
Query: 502 YNVIRHN------TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEP 555
+ V+ + +P ++ID + +YWT N I V+ LDG ++ P
Sbjct: 375 FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 434
Query: 556 RDIAVNPIGGIMYWCSWG-DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
R + VNP G MY+ + KIE A +DG+ R +L L P LA+D +L+WA
Sbjct: 435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 494
Query: 615 NVGLKTIEFTNLDGTRKQTLIALHHLK--------------------------------- 641
+ L+ IE ++L G + L + L+
Sbjct: 495 DSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRT 554
Query: 642 -VMTKVVGLTDIDIFH--RRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLRED 698
V ++ L+DI + + HPC ++NGGCSH+CL+ RC CP +L +D
Sbjct: 555 KVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQD 614
Query: 699 RRTCSENPSK 708
+C
Sbjct: 615 ELSCGGTKHH 624
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 433 bits (1115), Expect = e-137
Identities = 180/622 (28%), Positives = 291/622 (46%), Gaps = 55/622 (8%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
PE L+++R+ D+R L + +P+ VK A+ ++ ++ +YW D+ I+
Sbjct: 5 PEAFLLFSRRADIRRISLE--TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 493 RAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
RA +NG+ +V+ P G+A+DW LYW ++ N IEVS LDG + +L W++L
Sbjct: 63 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 122
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
PR +A++P G MYW WG KI+ A MDGS R L + + GL ID RLY
Sbjct: 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLY 181
Query: 613 WANVGLKTIEFTNLDGTRKQTL---------IALHHLK---------------------- 641
W ++ IE +N+ G ++ + + +
Sbjct: 182 WTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 642 --VMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699
+ + + DI +FH R + C +NG CSHLCL P G C CPA L D
Sbjct: 242 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 301
Query: 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDIS 759
RTCS + L SQ I ++ +D + I+LP+ L+ V ++D D ++ +YW D
Sbjct: 302 RTCSAPTTFL-LFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360
Query: 760 EKTIERVRFDMTGRERLVVNDLNRT------ESIAVDAIGRKIYWTDMNAQTIMVSDIDG 813
+ I + + D + +VV+ + +++D R IYWT I V+ +DG
Sbjct: 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 814 KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVI 872
++ V+ RPR++VV+ G M + + + +IE A +DGT R V F + +
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLS 477
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTD 931
P LA+D KL+W D+ IE L R + P LTV + ++YW D
Sbjct: 478 KPIALALDSRLG-KLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWID 536
Query: 932 VQHSKIYRANKYDVKDIVEFA-QVDRPWLVRAAQNISFP----NACGSNNGGCSHLCLRN 986
Q I + + + + ++ + + A + ++ + C +NGGCSH+CL
Sbjct: 537 KQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVK 596
Query: 987 PTN-FTCACPTGILLSADRRSC 1007
C+CP ++L D SC
Sbjct: 597 GDGTTRCSCPMHLVLLQDELSC 618
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 407 bits (1046), Expect = e-127
Identities = 186/629 (29%), Positives = 282/629 (44%), Gaps = 29/629 (4%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
P FLL S+ IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R
Sbjct: 5 PEAFLLFSRRADIRRISLETN-NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
+ + E +V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD 123
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNP 885
PR++ + G M W +W +I+ A MDG+ R V + L IDY
Sbjct: 124 SPRALALDPAEGFMYWTEWGG----KPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKR 178
Query: 886 KLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV 945
+LYW D + IE + + HP+ LT Y+YWTD I RANK
Sbjct: 179 RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238
Query: 946 KDIVEFA-QVDRPW--LVRAAQNISFPNACGSNNGGCSHLCLRNPTN-FTCACPTGILLS 1001
++ +D LV + S N C S+NG CSHLCL P F C CP L+
Sbjct: 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 298
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYF 1061
AD R+C + T L I R+ +D + LP + DY +Y+
Sbjct: 299 ADNRTCSAPTTFLLFSQK--SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 1062 ADMRSGNLRTFDMSDSTRIKPIPLMNDTIR-----DNFVIDWVANNIYYIDSQMHTINVA 1116
D R +R S + + + ID + IY+ + INV
Sbjct: 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 416
Query: 1117 RSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV 1175
R DG+ +++ + P A+ V P +G +++++ + KIE+ LDG+ R VL
Sbjct: 417 RLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ----ERSPKIERAALDGTEREVLF 472
Query: 1176 EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKA 1235
L+ P LA+D + +LFWADS +RIE D G +R ++ + +
Sbjct: 473 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENW- 531
Query: 1236 FIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDN 1295
LYW D + + + + R Q ++ ++ +PCAQDN
Sbjct: 532 ----LYWIDKQQQMIEKI-DMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDN 586
Query: 1296 GGCSHLCFYKGRTKGYVCGCPDDLEPNEE 1324
GGCSH+C KG C CP L ++
Sbjct: 587 GGCSHICLVKGDG-TTRCSCPMHLVLLQD 614
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 240 bits (612), Expect = 1e-67
Identities = 77/309 (24%), Positives = 136/309 (44%), Gaps = 31/309 (10%)
Query: 158 RHCPKRVSLSNKKYTAI---IRNLHNVLAVDYHYKKNLLVW-----------------NT 197
+ R+ + ++ I I +L NV A+DY L W
Sbjct: 316 KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
Query: 198 HIVHTGMQSVG------SLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPR 251
+V + + S LS+D +++WT A + LDG++ +++ D+PR
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPR 435
Query: 252 AVIVHPRDAFVFWTDWG-KTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTE 310
AV+V+P ++++T+ ++PKIER +DG+ R+V+ + P L +D +L+W +
Sbjct: 436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWAD 495
Query: 311 AKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKT 370
+ IESSDL G+ R + + P G+T++E++++W D + I +
Sbjct: 496 SDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTK 555
Query: 371 VHSGLHFPMNIRSYHPHRQPNYQSH---CAPKVCSHICLPN-KHRFTCQCPLGLTLSPDN 426
V + + +I + Y+ H CSHICL C CP+ L L D
Sbjct: 556 VQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDE 615
Query: 427 KSCSESPEE 435
SC +
Sbjct: 616 LSCGGTKHH 624
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 358 bits (920), Expect = e-109
Identities = 135/478 (28%), Positives = 211/478 (44%), Gaps = 67/478 (14%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDG 80
+C+ G CI QCD E+DC+ DE+ C + P++ +C +G CI +C+
Sbjct: 221 QCS-DGNCIHGSRQCDREYDCKDMSDEVGCV--NVTLCEGPNKFKCHSGECITLDKVCNM 277
Query: 81 IPDCSLGEDE--RNCNKTCDAQKEFSCMKLAEPRPTEV------GSNIKYFPLHTVRAPR 132
DC DE + C C + G +
Sbjct: 278 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 337
Query: 133 KDCFSKKYLCDG-----KKHCPRGEEGPDERHCPK-----------------RVSLSNKK 170
+D + LC K C G + K +++L +
Sbjct: 338 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 397
Query: 171 YTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVHTGMQSVGS 209
YT++I NL NV+A+D N + W+ ++ +Q+
Sbjct: 398 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457
Query: 210 LSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGK 269
L+VDW+H ++WTD+ V D G RK L KPRA++V P F++WTDWG
Sbjct: 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT 517
Query: 270 TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQV 329
KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D++G R+ +
Sbjct: 518 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 577
Query: 330 IT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPH 387
+ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P ++ +H
Sbjct: 578 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQL 637
Query: 388 RQPNYQSHCAPKV-----CSHICLPN------KHRFTCQCPLGLTLSPDNKSCSESPE 434
QP + C C ++CLP +FTC CP G+ L+ D +SC E
Sbjct: 638 TQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 695
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 6e-65
Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 54/376 (14%)
Query: 385 HPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKS-CSESPEELLIYARQK 443
R + P CS +C+ + + CQC G L P K+ + L + +
Sbjct: 327 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Query: 444 DLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYN 503
++R L E + N+++VVA+ E A++ +YW+D+ I ++ +
Sbjct: 387 EVRKMTLD----RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 442
Query: 504 ----VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIA 559
VI + + P G+A+DW + +YWT+S + V++ G LF + S+PR I
Sbjct: 443 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV 502
Query: 560 VNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLK 619
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562
Query: 620 TIEFTNLDGTRKQTLIALHHL------------------------------------KVM 643
+I +++G ++T++ +
Sbjct: 563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622
Query: 644 TKVVGLTDIDIFHRRR-SKKTHPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGNL 694
++ D+ +FH+ + + C +NGGC +LCL AP+ C CP G L
Sbjct: 623 ENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 682
Query: 695 LREDRRTCSENPSKFL 710
L D R+C +
Sbjct: 683 LARDMRSCLTEAEAAV 698
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 4e-62
Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 29/367 (7%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISL 723
++ CS LC+ L + + +L + ++R+++L
Sbjct: 334 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 393
Query: 724 DVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVN 779
D R + L+ V ++D + + IYWSD+S++ I + D ++ + ++
Sbjct: 394 D---RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450
Query: 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLM 839
D+ + +AVD I IYWTD T+ V+D G K LF +PR+IVV G M
Sbjct: 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFM 510
Query: 840 VWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE 898
W DW +I+ ++G + + WP+ + +D +LYWVD+ H+I
Sbjct: 511 YWTDWGT----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSIS 565
Query: 899 YKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-QV 954
+ G K + +HP++L V + V+WTD+ + I+ AN+ D+ A +
Sbjct: 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL 625
Query: 955 DRPWLVRAAQNIS---FPNACGS---NNGGCSHLCLRNP------TNFTCACPTGILLSA 1002
P + ++ N C +NGGC +LCL P FTCACP G+LL+
Sbjct: 626 LSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 685
Query: 1003 DRRSCFS 1009
D RSC +
Sbjct: 686 DMRSCLT 692
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 1e-55
Identities = 87/365 (23%), Positives = 155/365 (42%), Gaps = 34/365 (9%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDT 1031
+ CS LC+ + C C G L ++C + L+ + +R+++LD
Sbjct: 336 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 395
Query: 1032 ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMND 1088
++ + P + + D + N IY++D+ + + + + + +
Sbjct: 396 SEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 452
Query: 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFY 1147
D +DW+ +NIY+ DS + T++VA + G +K L +P AI V P G +++
Sbjct: 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYW 512
Query: 1148 SHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYC 1207
+ WG KI+K L+G LV E++ +PN + +D RL+W DS I
Sbjct: 513 TDWG---TPA--KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567
Query: 1208 DFFGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
D G +RK ++ P+ L+V + +++WTD ++ TG D
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDIINEAIF--SANRLTGS-D 617
Query: 1264 VHLIRSNQEDFLNIKAISASKQLTW-NPC---AQDNGGCSHLCF----YKGRTKGYVCGC 1315
V+L+ N ++ Q N C NGGC +LC + + C C
Sbjct: 618 VNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCAC 677
Query: 1316 PDDLE 1320
PD +
Sbjct: 678 PDGML 682
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 2e-38
Identities = 76/401 (18%), Positives = 134/401 (33%), Gaps = 68/401 (16%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTW 76
++ +G CI + W+CD DC+ DE C C PDE +C+ G+CI +
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA----VATCRPDEFQCSDGNCIHGSR 232
Query: 77 LCDGIPDCSLGEDERNCN--KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKD 134
CD DC DE C C+ +F C +
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKC-------------------------HSGE 267
Query: 135 CFSKKYLCDGKKHCPRGEEGP--------------------------DERHCPKRVSLSN 168
C + +C+ + C + P E CP L
Sbjct: 268 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 327
Query: 169 KKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARR 228
++ I + + + + V + T
Sbjct: 328 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 387
Query: 229 VEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSN----RK 284
V LD LI N + A+ ++W+D I ++D ++
Sbjct: 388 VRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYD 445
Query: 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITL-- 342
+++ +I P+GL +D+ +YWT++ + +D G +R+ + + P I +
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 343 YEDFVFWTDWHTKS-ISSANKYTGRNIKT-VHSGLHFPMNI 381
F++WTDW T + I G +I + V + +P I
Sbjct: 506 VHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENIQWPNGI 545
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-24
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 32/144 (22%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWL 77
+ R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++
Sbjct: 51 DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFV 106
Query: 78 CDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137
CD DC G DE +C F C C
Sbjct: 107 CDSDRDCLDGSDEASCPVLTCGPASFQC-------------------------NSSTCIP 141
Query: 138 KKYLCDGKKHCPRGEEGPDERHCP 161
+ + CD C G DE
Sbjct: 142 QLWACDNDPDCEDGS---DEWPQR 162
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 8e-22
Identities = 38/142 (26%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLCDGI 81
+ G CI +W CD +C+ G DE + C + C CI + W CDG
Sbjct: 14 QDGKCISYKWVCDGSAECQDGSDESQET--CLSVTCKSGDFSCGGRVNRCIPQFWRCDGQ 71
Query: 82 PDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYL 141
DC G DE+ C +Q EF C C S++++
Sbjct: 72 VDCDNGSDEQGCPPKTCSQDEFRC-------------------------HDGKCISRQFV 106
Query: 142 CDGKKHCPRGEEGPDERHCPKR 163
CD + C G DE CP
Sbjct: 107 CDSDRDCLDGS---DEASCPVL 125
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 1e-20
Identities = 38/162 (23%), Positives = 51/162 (31%), Gaps = 31/162 (19%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 96 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 151
Query: 84 CSLGEDERNCNKTCDAQ----------KEFSCM--------------KLAEPRPTEVGSN 119
C G DE EF C+ + + E
Sbjct: 152 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 211
Query: 120 IKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCP 161
+ + +C CD + C DE C
Sbjct: 212 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMS---DEVGCV 250
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 30/113 (26%)
Query: 54 SPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC---NKTCDAQKEFSCMKLAE 110
+ +C +E +C G CI W+CDG +C G DE + TC + +FSC
Sbjct: 1 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKS-GDFSC----- 54
Query: 111 PRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKR 163
C + + CDG+ C G DE+ CP +
Sbjct: 55 ------------------GGRVNRCIPQFWRCDGQVDCDNGS---DEQGCPPK 86
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 354 bits (909), Expect = e-106
Identities = 126/528 (23%), Positives = 203/528 (38%), Gaps = 57/528 (10%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDE--MKCPQASPPKKCSPDEHRCTT----------- 68
+G CI C+ DC DE +C H C
Sbjct: 280 KCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPD 339
Query: 69 GHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC---MKLAEPRPTEVGSNIKYFPL 125
G ++ C+ I +C + + + C +L +
Sbjct: 340 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399
Query: 126 HTVRAPRK----DCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRNLHNV 181
T R + D L ++ + + + H V
Sbjct: 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 459
Query: 182 LAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKI 241
++ +Q+ L+VDW+H ++WTD+ V D G RK
Sbjct: 460 ------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 507
Query: 242 LIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301
L N KPRA++V P F++WTDWG KI++ ++G + ++TENI WPNG+T+D
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567
Query: 302 EEDRLYWTEAKHHFIESSDLDGSRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISS 359
RLYW ++K H I S D++G R+ ++ K L HPF + ++ED VFWTD ++I S
Sbjct: 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 627
Query: 360 ANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV-----CSHICLP------N 408
AN+ TG ++ + L P ++ +H QP + C C ++CLP +
Sbjct: 628 ANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPH 687
Query: 409 KHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKS 468
+FTC CP G+ L+ D +SC E + +R+ + T T +
Sbjct: 688 SPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPV---- 743
Query: 469 VVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI-RHNTKKPAGV 515
L A + ++ +V R N KKP+ V
Sbjct: 744 -------PDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGNEKKPSSV 784
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 3e-68
Identities = 98/432 (22%), Positives = 176/432 (40%), Gaps = 63/432 (14%)
Query: 385 HPHRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQK 443
R+ C P CS +C+ + + CQC G L P K+C ++
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN- 402
Query: 444 DLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING----T 499
R E + N+++VVA+ E A++ +YW+D+ I ++ +
Sbjct: 403 --RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
Query: 500 FQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIA 559
VI + + P G+A+DW + +YWT+S + V++ G LF +N S+PR I
Sbjct: 461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520
Query: 560 VNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLK 619
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580
Query: 620 TIEFTNLDGTRKQTLIALHHL------------------------------------KVM 643
+I +++G ++T++ +
Sbjct: 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640
Query: 644 TKVVGLTDIDIFHR-RRSKKTHPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGNL 694
++ D+ +FH + + + C +NGGC +LCL AP+ C CP G L
Sbjct: 641 ENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 700
Query: 695 LREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIY 754
L D R+C + +Q ++ + R + + +
Sbjct: 701 LARDMRSCLTEAE-AAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSR---------LP 750
Query: 755 WSDISEKTIERV 766
+ T+E V
Sbjct: 751 GATPGLTTVEIV 762
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 240 bits (612), Expect = 2e-66
Identities = 112/401 (27%), Positives = 183/401 (45%), Gaps = 32/401 (7%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT-CSENPSKFLLVSQTDKIRQIS 722
++ CS LC + + G +C C G L + + +L + ++R+++
Sbjct: 352 IDECQDPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Query: 723 LDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVV 778
LD ++ L+ V ++D + + IYWSD+S++ I + D ++ + ++
Sbjct: 411 LDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467
Query: 779 NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGL 838
D+ + +AVD I IYWTD T+ V+D G K LF N +PR+IVV G
Sbjct: 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 527
Query: 839 MVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
M W DW +I+ ++G + + WP+ + +D +LYWVD+ H+I
Sbjct: 528 MYWTDWGT----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSI 582
Query: 898 EYKTLATGRAK---RAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-Q 953
+ G K +HP++L V + V+WTD+ + I+ AN+ D+ A
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 642
Query: 954 VDRPWLVRAAQNISFP---NACGS---NNGGCSHLCLRNPTN------FTCACPTGILLS 1001
+ P + N++ P N C +NGGC +LCL P FTCACP G+LL+
Sbjct: 643 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 702
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFP 1042
D RSC + E + T +R TA T P
Sbjct: 703 RDMRSCLTEA-EAAVATQETSTVRLKVSSTAVRTQHTTTRP 742
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 210 bits (534), Expect = 2e-56
Identities = 87/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ CS LC+ + C C G L ++C + L+ + +R+++LD ++
Sbjct: 356 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMNDTI 1090
+ P + + D + N IY++D+ + + + + + +
Sbjct: 416 YTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472
Query: 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSH 1149
D +DW+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++
Sbjct: 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532
Query: 1150 WGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
WG KI+K L+G LV E++ +PN + +D RL+W DS I D
Sbjct: 533 WG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587
Query: 1210 FGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265
G +RK ++ P+ L+V + +++WTD ++ TG DV+
Sbjct: 588 NGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDIINEAIF--SANRLTGS-DVN 637
Query: 1266 LIRSNQEDFLNIKAISASKQLTW-NPCAQ---DNGGCSHLCF----YKGRTKGYVCGCPD 1317
L+ N ++ Q N C + NGGC +LC + + C CPD
Sbjct: 638 LLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 697
Query: 1318 DLE 1320
+
Sbjct: 698 GML 700
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 8e-39
Identities = 81/417 (19%), Positives = 138/417 (33%), Gaps = 60/417 (14%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP------QASPPKKCSPDEHRCTTGHCILK 74
+CN + CIP W CDN+ DCE G DE CS E C +G CI
Sbjct: 151 QCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 209
Query: 75 TWLCDGIPDCSLGEDERNCNKTCDAQKEFSCM-----------------KLAEPRPTEVG 117
+W CDG PDC DE NC EF C K V
Sbjct: 210 SWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 269
Query: 118 SNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRN 177
+ P + + +C + +C+ + C + P + +N + + +
Sbjct: 270 VTLCEGP-NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 328
Query: 178 LHNVLAVDYHYKKNLL-------------------------VWNTHIVHTGMQSVGSLSV 212
L L+ G Q
Sbjct: 329 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 388
Query: 213 DWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
+ + R ++ + N+ A+ ++W+D
Sbjct: 389 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS-QRM 447
Query: 273 IERVEMDG----SNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQ 328
I ++D S+ +++ +I P+GL +D+ +YWT++ + +D G +R+
Sbjct: 448 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 507
Query: 329 VITKGLPHPFGITL--YEDFVFWTDWHTKS-ISSANKYTGRNIKT-VHSGLHFPMNI 381
+ + P I + F++WTDW T + I G +I + V + +P I
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENIQWPNGI 563
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-25
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 32/146 (21%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWL 77
+ R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++
Sbjct: 69 DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFV 124
Query: 78 CDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137
CD DC G DE +C F C C
Sbjct: 125 CDSDRDCLDGSDEASCPVLTCGPASFQC-------------------------NSSTCIP 159
Query: 138 KKYLCDGKKHCPRGEEGPDERHCPKR 163
+ + CD C G DE R
Sbjct: 160 QLWACDNDPDCEDGS---DEWPQRCR 182
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 33/145 (22%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLC 78
+C G CI +W CD +C+ G DE + C + C CI + W C
Sbjct: 30 QCQ-DGKCISYKWVCDGSAECQDGSDESQET--CLSVTCKSGDFSCGGRVNRCIPQFWRC 86
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSK 138
DG DC G DE+ C +Q EF C C S+
Sbjct: 87 DGQVDCDNGSDEQGCPPKTCSQDEFRC-------------------------HDGKCISR 121
Query: 139 KYLCDGKKHCPRGEEGPDERHCPKR 163
+++CD + C +G DE CP
Sbjct: 122 QFVCDSDRDCL---DGSDEASCPVL 143
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 2e-21
Identities = 35/141 (24%), Positives = 47/141 (33%), Gaps = 22/141 (15%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 169
Query: 84 CSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCD 143
C G DE + + +C + CD
Sbjct: 170 CEDGSDEWPQRCRGLYVFQGDSSPCSA---------------FEFHCLSGECIHSSWRCD 214
Query: 144 GKKHCPRGEEGPDERHCPKRV 164
G C + DE +C
Sbjct: 215 GGPDCK---DKSDEENCAVAT 232
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 2e-15
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 37/135 (27%)
Query: 32 QWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDER 91
+ + + +C +E +C G CI W+CDG +C G DE
Sbjct: 4 KLRWTVALLLA-------AAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDES 56
Query: 92 NC---NKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHC 148
+ TC + +FSC C + + CDG+ C
Sbjct: 57 QETCLSVTCKS-GDFSC-----------------------GGRVNRCIPQFWRCDGQVDC 92
Query: 149 PRGEEGPDERHCPKR 163
G DE+ CP +
Sbjct: 93 D---NGSDEQGCPPK 104
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 301 bits (771), Expect = 7e-92
Identities = 146/400 (36%), Positives = 223/400 (55%), Gaps = 45/400 (11%)
Query: 62 DEHRCTT--GHCILKTWLCDGIP-----DCSLGEDERNCNKTCDAQKEFSCMKLAEPRPT 114
E C G C C I C G +TC E +
Sbjct: 2 GEENCNVNNGGC---AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA---------- 48
Query: 115 EVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGP----DERHCPKRVSLSNKK 170
++ A + C + L ++ C P R ++V +
Sbjct: 49 -EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE 107
Query: 171 YTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVD 213
YT ++ NL N +A+D+H+++ L+ W+ +V TG++S G L+VD
Sbjct: 108 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
WVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++WTDWG TP+I
Sbjct: 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 227
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
E MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI++G
Sbjct: 228 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP +
Sbjct: 288 LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGK 347
Query: 394 SHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
+ C C+H+CLP+ +TC CP G ++ +C++
Sbjct: 348 NRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAQ 386
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 251 bits (641), Expect = 4e-74
Identities = 113/356 (31%), Positives = 170/356 (47%), Gaps = 16/356 (4%)
Query: 658 RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDK 717
R + + C G CS C + +C C AG LR DRR+C + +L+
Sbjct: 39 RTCQDVNEC-AEEGYCSQGCTNSEG-AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96
Query: 718 IRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLV 777
+ L Y + L L+ ++D + E ++WSD++ I R + + E +V
Sbjct: 97 DIRQVLPHRSEYTL--LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154
Query: 778 VNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLG 837
L +AVD + K+YWTD I V+++DG + KVL W +L +PR+I +H G
Sbjct: 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214
Query: 838 LMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHT 896
+ W DW RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H
Sbjct: 215 TIYWTDWG----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHV 269
Query: 897 IEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA--- 952
IE L + R HP+ +TV + +YWTD I ANK+ K+
Sbjct: 270 IERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL 329
Query: 953 -QVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ + + N CG NNGGC+HLCL + N+TCACPTG + +C
Sbjct: 330 HFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 384
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 240 bits (612), Expect = 3e-70
Identities = 109/354 (30%), Positives = 165/354 (46%), Gaps = 41/354 (11%)
Query: 387 HRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL 445
R + CA CS C ++ F C C G L PD +SC
Sbjct: 38 GRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP---EPVLLFAN 94
Query: 446 RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI 505
RI E L + N+++ +A+ + + ++W+DV I RA++NG+ V+
Sbjct: 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154
Query: 506 RHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGG 565
+ P G+A+DW +KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G
Sbjct: 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214
Query: 566 IMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625
+YW WG+ +IE + MDGS R I+A L P GL ID R+YW + IE N
Sbjct: 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274
Query: 626 LDGTRKQTLIA--LHHLK--------------------------------VMTKVVGLTD 651
LDG+ ++ +I+ L H + K+ D
Sbjct: 275 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 334
Query: 652 IDIFHRRRSKKT-HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
I H +R + C +NNGGC+HLCL + + C CP G + C++
Sbjct: 335 IHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ-NYTCACPTGFRK-INSHACAQ 386
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 2e-63
Identities = 105/360 (29%), Positives = 178/360 (49%), Gaps = 27/360 (7%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ G CS C + F C C G L DRRSC + E +L + IR++ ++
Sbjct: 48 AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE 107
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN 1093
TL ++I D+H+ + L++++D+ + +++ S + + ++
Sbjct: 108 ---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP-GG 163
Query: 1094 FVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSHWGL 1152
+DWV + +Y+ DS I VA DG H+K+L+ L +P AIA++P G ++++ WG
Sbjct: 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG- 222
Query: 1153 YDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR 1212
N+P +IE +DGS R ++ + L +PN L ID+ RR++W D+ + IE + G
Sbjct: 223 --NTP--RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278
Query: 1213 SRKIVISKVA--PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270
RK VIS+ P+ ++V + LYWTDW S+ TG+ + +IR+
Sbjct: 279 HRKAVISQGLPHPFAITVFED-------SLYWTDWHTKSIN--SANKFTGK-NQEIIRNK 328
Query: 1271 QEDFLNIKAISASKQLT-WNPCAQDNGGCSHLCFYKGRTKGYVCGCPDD--LEPNEECFE 1327
++I + +Q N C +NGGC+HLC G+ Y C CP + C +
Sbjct: 329 LHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ--NYTCACPTGFRKINSHACAQ 386
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 6e-89
Identities = 102/301 (33%), Positives = 160/301 (53%), Gaps = 34/301 (11%)
Query: 163 RVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVH 201
+++L +YT++I NL NV+A+D N + W+ ++
Sbjct: 14 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73
Query: 202 TGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
+Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V P F
Sbjct: 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 133
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193
Query: 322 DGSRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPM 379
+G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P
Sbjct: 194 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 253
Query: 380 NIRSYHPHRQPNYQSHCAPKV-----CSHICLPNKH------RFTCQCPLGLTLSPDNKS 428
++ +H QP + C C ++CLP +FTC CP G+ L+ D +S
Sbjct: 254 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 313
Query: 429 C 429
C
Sbjct: 314 C 314
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 244 bits (624), Expect = 1e-72
Identities = 98/322 (30%), Positives = 161/322 (50%), Gaps = 29/322 (9%)
Query: 709 FLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRF 768
+L + ++R+++LD R + L+ V ++D + + IYWSD+S++ I +
Sbjct: 3 YLFFTNRHEVRKMTLD---RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 769 D----MTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
D ++ + ++ D+ + +AVD I IYWTD T+ V+D G K LF N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSD 883
+PR+IVV G M W DW T +I+ ++G + + WP+ + +D
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-L 174
Query: 884 NPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRA 940
+ +LYWVD+ H+I + G K + +HP++L V + V+WTD+ + I+ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 941 NKYDVKDIVEFA-QVDRPWLVRAAQNISFP---NACGS---NNGGCSHLCLRNP------ 987
N+ D+ A + P + N++ P N C +NGGC +LCL P
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS 294
Query: 988 TNFTCACPTGILLSADRRSCFS 1009
FTCACP G+LL+ D RSC +
Sbjct: 295 PKFTCACPDGMLLARDMRSCLT 316
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 6e-64
Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 53/315 (16%)
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHI 496
L + + ++R L T + N+++VVA+ E A++ +YW+D+ I +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 497 NG----TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + VI + + P G+A+DW + +YWT+S + V++ G LF +N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
S+PR I V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLY
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179
Query: 613 WANVGLKTIEFTNLDGTRKQTLIALHHLK------------------------------- 641
W + L +I +++G ++T++
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239
Query: 642 -----VMTKVVGLTDIDIFHR-RRSKKTHPCNE---NNGGCSHLCLIAPK-----DGIRC 687
+ ++ D+ +FH + + + C +NGGC +LCL AP+ C
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC 299
Query: 688 VCPAGNLLREDRRTC 702
CP G LL D R+C
Sbjct: 300 ACPDGMLLARDMRSC 314
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-54
Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 35/323 (10%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
+L +T+R +R+++LD ++ T P + + D + N IY++D+ + +
Sbjct: 3 YLFFTNR-HEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 1074 M---SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-D 1129
+ + + + D +DW+ +NIY+ DS + T++VA + G +K L +
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
+P AI V P G ++++ WG KI+K L+G LV E++ +PN + +D
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDW 1245
RL+W DS I D G +RK ++ P+ L+V + +++WTD
Sbjct: 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDI 226
Query: 1246 EAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTW-NPCAQ---DNGGCSHL 1301
++ TG DV+L+ N ++ Q N C + NGGC +L
Sbjct: 227 INEAIF--SANRLTGS-DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYL 283
Query: 1302 CF----YKGRTKGYVCGCPDDLE 1320
C + + C CPD +
Sbjct: 284 CLPAPQINPHSPKFTCACPDGML 306
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 62/313 (19%)
Query: 572 WGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRK 631
+ + H++ +D S L + L+N L ++ ++R+YW+++ + I T LD
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 632 QTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLI-APKDGIRCVCP 690
+ + + GL +D H ++ + +
Sbjct: 65 VSSYDTVISRDIQAPDGLA-VDWIHS-----------------NIYWTDSVLGTVSVADT 106
Query: 691 AGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKN 750
G R+T L K R I +D +
Sbjct: 107 KGV----KRKT--------LFRENGSKPRAIVVDPVHG---------------------- 132
Query: 751 EYIYWSDISEK-TIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVS 809
++YW+D I++ + LV ++ I +D + ++YW D +I
Sbjct: 133 -FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191
Query: 810 DIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH-MDGTNRAVFE 868
D++G N K + + + W D N I A+ + G++ +
Sbjct: 192 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGSDVNLLA 246
Query: 869 TEVIWPSCLAIDY 881
++ P + + +
Sbjct: 247 ENLLSPEDMVLFH 259
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 290 bits (742), Expect = 8e-89
Identities = 114/296 (38%), Positives = 175/296 (59%), Gaps = 24/296 (8%)
Query: 163 RVSLSN--KKYTAIIRNLHNVLAVDYHYKKNLLVW------------------NTHIVHT 202
V +N + T ++ L + AVD+ + L+ W ++V +
Sbjct: 17 LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ S L+ DW+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F+
Sbjct: 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 136
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WTDWG+ PKIER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LD
Sbjct: 137 YWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G+ RQ V+ LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I
Sbjct: 197 GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 256
Query: 383 SYHPHRQPNYQSH--CAPKVCSHICLPNKHR--FTCQCPLGLTLSPDNKSCSESPE 434
++ RQPN + CSH+CL + + + C CP G+ L + K+C +
Sbjct: 257 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 8e-73
Identities = 108/311 (34%), Positives = 159/311 (51%), Gaps = 15/311 (4%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
+ LL + +R + + + + L+ A+VD + IYWSD+SE+ I+R
Sbjct: 3 SAPLLLYANRRDLRLVDATNG-KENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKR 61
Query: 766 VRFDMTGR-ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
F+ T + +VV+ L + +A D +G K+YWTD I VS++DG KVLFW L
Sbjct: 62 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 121
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSD 883
+PR+I + G M W DW +IE A MDG++R + +E+ WP+ L +DY +
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGE----VPKIERAGMDGSSRFIIINSEIYWPNGLTLDY-E 176
Query: 884 NPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANK 942
KLYW D + I L T R HP+ LT+ + +YWTD I NK
Sbjct: 177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 236
Query: 943 YDVKDIVEFA-QVDRPWLVRAAQNISFPNA---CGSNNGGCSHLCLRNPTN--FTCACPT 996
Y + + E + P + A PNA CG +NGGCSHLCL +P + CACPT
Sbjct: 237 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 296
Query: 997 GILLSADRRSC 1007
G+ L + ++C
Sbjct: 297 GVKLLENGKTC 307
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 226 bits (576), Expect = 3e-66
Identities = 114/312 (36%), Positives = 160/312 (51%), Gaps = 39/312 (12%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
LL+YA ++DLR+ T + + V ++ A+ + ++ +YW+DV I
Sbjct: 3 SAPLLLYANRRDLRLVDAT--NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK 60
Query: 493 RAHINGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQN 551
R N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ
Sbjct: 61 RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 120
Query: 552 LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
L +PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +L
Sbjct: 121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 612 YWANVGLKTIEFTNLDGTRKQTLIA--LHHLKVMT--------------------KVVG- 648
YWA+ L I +NLDGT +Q ++ L H +T K G
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240
Query: 649 ------------LTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLL 695
+ +R+ T+PC +NGGCSHLCL++P K +C CP G L
Sbjct: 241 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL 300
Query: 696 REDRRTCSENPS 707
E+ +TC + S
Sbjct: 301 LENGKTCKDGNS 312
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 3e-55
Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
LLY +R +R + T+ + D+ +S LIY++D+ ++ +
Sbjct: 6 LLLYANRRD-LRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 63
Query: 1074 MSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLME 1132
+ + ++ + + D DW+ +Y+ DS+ + I V+ DG +K+L +L +
Sbjct: 64 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 123
Query: 1133 PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192
P AIA+ P G ++++ WG KIE+ +DGS R +++ ++ +PN L +D++++
Sbjct: 124 PRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178
Query: 1193 RLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252
+L+WAD+ I + G +R+ V+ P+ ++ LYWTDW S++
Sbjct: 179 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI-----LYWTDWSTHSIL- 232
Query: 1253 AREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYV 1312
TG+ + + NPC DNGGCSHLC Y
Sbjct: 233 -ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQ 291
Query: 1313 CGCPDDLE 1320
C CP ++
Sbjct: 292 CACPTGVK 299
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 285 bits (730), Expect = 4e-86
Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 25/394 (6%)
Query: 50 CPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQK-EFSCMKL 108
C +C C G ++ C+ I +C +D C++ C + + C
Sbjct: 14 CNDLKIGYECL-----CPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLEGGYKCQCE 65
Query: 109 AEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSN 168
+ K +K D ++ + V+ +
Sbjct: 66 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 125
Query: 169 KKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARR 228
++ + + + +D + + ++ +Q+ L+VDW+H ++WTD+
Sbjct: 126 IYWSDLSQRMICSTQLDRA---HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 182
Query: 229 VEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILT 288
V D G RK L N KPRA++V P F++WTDWG KI++ ++G + ++T
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242
Query: 289 ENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVIT--KGLPHPFGITLYEDF 346
ENI WPNG+T+D RLYW ++K H I S D++G R+ ++ K L HPF + ++ED
Sbjct: 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 302
Query: 347 VFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV-----C 401
VFWTD ++I SAN+ TG ++ + L P ++ +H QP + C C
Sbjct: 303 VFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGC 362
Query: 402 SHICLP------NKHRFTCQCPLGLTLSPDNKSC 429
++CLP + +FTC CP G+ L+ D +SC
Sbjct: 363 QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 7e-68
Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 53/369 (14%)
Query: 384 YHPHRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQ 442
R+ C P CS +C+ + + CQC G L P K+C ++
Sbjct: 31 LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 90
Query: 443 KDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING---- 498
R E + N+++VVA+ E A++ +YW+D+ I ++
Sbjct: 91 ---RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147
Query: 499 TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDI 558
+ VI + + P G+A+DW + +YWT+S + V++ G LF +N S+PR I
Sbjct: 148 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 207
Query: 559 AVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGL 618
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267
Query: 619 KTIEFTNLDGTRKQTLIALHHLK------------------------------------V 642
+I +++G ++T++ +
Sbjct: 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 327
Query: 643 MTKVVGLTDIDIFHRRRSKK-THPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGN 693
++ D+ +FH + + C +NGGC +LCL AP+ C CP G
Sbjct: 328 AENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 387
Query: 694 LLREDRRTC 702
LL D R+C
Sbjct: 388 LLARDMRSC 396
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 233 bits (595), Expect = 8e-68
Identities = 113/407 (27%), Positives = 179/407 (43%), Gaps = 70/407 (17%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----TCSEN------------- 705
+ C +NNGGCSH+C G C+CP G L RR C +
Sbjct: 1 NECLDNNGGCSHVCNDLK-IGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59
Query: 706 ----------------------PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVAS 743
+L + ++R+++LD ++ L+ V +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVA 116
Query: 744 VDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYWT 799
+D + + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYWT
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 176
Query: 800 DMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859
D T+ V+D G K LF N +PR+IVV G M W DW T +I+ +
Sbjct: 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGL 232
Query: 860 DGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---S 915
+G + + WP+ + +D +LYWVD+ H+I + G K + +
Sbjct: 233 NGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 291
Query: 916 HPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-QVDRPWLVRA---AQNISFPNA 971
HP++L V + V+WTD+ + I+ AN+ D+ A + P + N
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNW 351
Query: 972 C---GSNNGGCSHLCLRNPTN------FTCACPTGILLSADRRSCFS 1009
C +NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 352 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 214 bits (545), Expect = 4e-61
Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 32/362 (8%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ CS LC+ + C C G L ++C + L+ + +R+++LD ++
Sbjct: 44 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 103
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMNDTI 1090
T P + + D + N IY++D+ + + + + + +
Sbjct: 104 ---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160
Query: 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSH 1149
D +DW+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++
Sbjct: 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220
Query: 1150 WGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
WG KI+K L+G LV E++ +PN + +D RL+W DS I D
Sbjct: 221 WG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 275
Query: 1210 FGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265
G +RK ++ P+ L+V F +++WTD ++ TG
Sbjct: 276 NGGNRKTILEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIF--SANRLTGSDVNL 326
Query: 1266 LIRSNQEDFLNIKAISASKQLTWNPC---AQDNGGCSHLCF----YKGRTKGYVCGCPDD 1318
L + + + ++ N C NGGC +LC + + C CPD
Sbjct: 327 LAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 386
Query: 1319 LE 1320
+
Sbjct: 387 ML 388
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 273 bits (699), Expect = 2e-82
Identities = 134/321 (41%), Positives = 205/321 (63%), Gaps = 24/321 (7%)
Query: 134 DCFSKKYLCDGKKHCPRGEEGPDE----RHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYK 189
C + L ++ C P R ++V +YT ++ NL N +A+D+H++
Sbjct: 24 WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR 83
Query: 190 KNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFC 232
+ L+ W+ +V TG++S G L+VDWVHD ++WTD+ R+E
Sbjct: 84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143
Query: 233 DLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIF 292
+LDG +RK+L+ +++KPRA+ +HP + ++WTDWG TP+IE MDGS R++I ++F
Sbjct: 144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 203
Query: 293 WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDW 352
WPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI++GLPHPF IT++ED ++WTDW
Sbjct: 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDW 263
Query: 353 HTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA--PKVCSHICLPNKH 410
HTKSI+SANK+TG+N + + + LHFPM+I + HP RQP ++ C C+H+CLP+
Sbjct: 264 HTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ 323
Query: 411 RFTCQCPLGLTLSPDNKSCSE 431
+TC CP G ++ +C+
Sbjct: 324 NYTCACPTGFRKI-NSHACAL 343
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 249 bits (635), Expect = 8e-74
Identities = 116/350 (33%), Positives = 167/350 (47%), Gaps = 17/350 (4%)
Query: 665 PCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC-SENPSKFLLVSQTDKIRQISL 723
C G CS C + +C C AG LR DRR+C + P LL + IRQ+
Sbjct: 3 EC-AEEGYCSQGCTNSE-GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 724 DVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNR 783
R L L L+ ++D + E ++WSD++ I R + + E +V L
Sbjct: 61 H---RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 117
Query: 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
+AVD + K+YWTD I V+++DG + KVL W +L +PR+I +H G + W D
Sbjct: 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177
Query: 844 WSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902
W RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H IE L
Sbjct: 178 WG----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANL 232
Query: 903 -ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA----QVDRP 957
+ R HP+ +TV + +YWTD I ANK+ K+
Sbjct: 233 DGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDI 292
Query: 958 WLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ + + N CG NNGGC+HLCL + N+TCACPTG
Sbjct: 293 HTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA 342
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 1e-68
Identities = 107/345 (31%), Positives = 161/345 (46%), Gaps = 40/345 (11%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPS 454
CA CS C ++ F C C G L PD +SC E ++ RI
Sbjct: 4 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFAN---RIDIRQVLP 60
Query: 455 PTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAG 514
E L + N+++ +A+ + + ++W+DV I RA++NG+ V+ + P G
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 120
Query: 515 VAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD 574
+A+DW +KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G +YW WG+
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 575 LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTL 634
+IE + MDGS R I+A L P GL ID R+YW + IE NLDG+ ++ +
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240
Query: 635 IALHHLK----------------------------------VMTKVVGLTDIDIFHRRRS 660
I+ + K+ DI H +R
Sbjct: 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ 300
Query: 661 KK-THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
+ C +NNGGC+HLCL + + C CP G E
Sbjct: 301 PAGKNRCGDNNGGCTHLCLPSGQ-NYTCACPTGFRKINSHACALE 344
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-60
Identities = 100/352 (28%), Positives = 163/352 (46%), Gaps = 20/352 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISL 1029
N C + G CS C + F C C G L DRRSC + E +L + IR++
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 1030 DTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089
++ TL ++I D+H+ + L++++D+ + ++ + + ++ +
Sbjct: 61 HRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL-NGSNVEEVVSTGLE 116
Query: 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYS 1148
+DWV + +Y+ DS I VA DG H+K+L+ L +P AIA++P G ++++
Sbjct: 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 176
Query: 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCD 1208
WG T +IE +DGS R ++ + L +PN L ID+ RR++W D+ + IE +
Sbjct: 177 DWG-----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231
Query: 1209 FFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268
G RK VIS+ P+ ++ LYWTDW S I TG+ +
Sbjct: 232 LDGSHRKAVISQGLPHPFAITVFEDS-----LYWTDWHTKS--INSANKFTGKNQEIIRN 284
Query: 1269 SNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
+ N C +NGGC+HLC G+ Y C CP
Sbjct: 285 KLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ--NYTCACPTGFR 334
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 3e-76
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 163 RVSLSNKKYTA------IIRNLHNVLAVDYHYKKNLLVW-----------------NTHI 199
R+ L + ++ + + ++ W T I
Sbjct: 14 RLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI 73
Query: 200 VHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRD 259
+ + S +++D + +FWTD+ R+E +DG R++L + PR ++ P
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133
Query: 260 AFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIES 318
++WTDW + PKIE MDG+NR+++ +N+ PNGLT D +L W +A H E
Sbjct: 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193
Query: 319 SDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHS-GLHF 377
+ R++V+ GL +PF +T Y +++TDW T S+ + + + + T H
Sbjct: 194 LNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR 252
Query: 378 PMNIRSYHPHRQ 389
I
Sbjct: 253 LYGITIALSQCP 264
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 233 bits (596), Expect = 2e-69
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 8/255 (3%)
Query: 709 FLLVSQTDKIRQISLD---VEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
LL +QT KI ++ L+ ++ K++ + D ++ +YW+DISE +I R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
++ DL E IA+D +GR I+WTD I V+ +DG +VLF L
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDN 884
PR IV G + W DW+R N +IE +HMDGTNR + + + P+ L D +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 885 PKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944
+L WVD H E A ++ +P+ +T +Y+TD + + + +
Sbjct: 180 -QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238
Query: 945 VKDIVEFAQVDRPWL 959
K++ F + L
Sbjct: 239 SKEMDTFHPHKQTRL 253
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 7e-61
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 437 LIYARQKDLRISQL--TEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRA 494
L++A+ + L T + K ++ +A++ + +YW D+ I RA
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 495 HINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
++G +IR + P G+A+D ++WT+S+ + IEV+ +DGT +LF L
Sbjct: 64 SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 555 PRDIAVNPIGGIMYWCSWG-DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
PR I +P+ G +YW W D KIE + MDG++R ILA D+L P GL D +S+L W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 614 ANVGLKTIEFTNLDGTRKQTLIA-LHH 639
+ G E N ++ ++ L +
Sbjct: 184 VDAGTHRAECLNPAQPGRRKVLEGLQY 210
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 7e-53
Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 20/277 (7%)
Query: 1014 FLLYTSRFGVIRRISLDTAD---LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLR 1070
LL+ G I R+ L+ I + ++Y+ D+ ++
Sbjct: 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 1071 TFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-D 1129
+ I + + +D + I++ DSQ+ I VA+ DG +++L +
Sbjct: 62 RASLHGGEPTTIIRQDLGSP-EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG 120
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
L+ P I P RG L+++ W KIE ++DG+ R +L +++L PN L D
Sbjct: 121 LVNPRGIVTDPVRGNLYWTDWN----RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAM 1248
+L W D+ R E + R+ V+ + P+ ++ LY+TDW+
Sbjct: 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-------NLYYTDWKTN 229
Query: 1249 SVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ 1285
SV+ + Q I +
Sbjct: 230 SVI--AMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 6/212 (2%)
Query: 174 IIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCD 233
+ + + +H + + L+ D V V+WTD + +
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64
Query: 234 LDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFW 293
L G +I ++ P + + +FWTD +IE +MDG+ R+V+ +
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-LDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 294 PNGLTIDFEEDRLYWTE--AKHHFIESSDLDGSRRQQVITKGLPHPFGITL--YEDFVFW 349
P G+ D LYWT+ + IE+S +DG+ R+ + L P G+T + + W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 350 TDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381
D T N + V GL +P +
Sbjct: 184 VDAGTHRAECLN-PAQPGRRKVLEGLQYPFAV 214
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 9/197 (4%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
T + ++ S IA + +++W D + I A ++GT + + P G+
Sbjct: 68 GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 516 AIDWRTNKLYWTE--SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWG 573
D LYWT+ + IE S++DGT +L NL P + + + W G
Sbjct: 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187
Query: 574 DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQT 633
H+ E R + L+ P + LY+ + ++ +L +++
Sbjct: 188 -THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD 243
Query: 634 LIALHHLKVMTKVVGLT 650
H T++ G+T
Sbjct: 244 TF---HPHKQTRLYGIT 257
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 53/310 (17%), Positives = 102/310 (32%), Gaps = 64/310 (20%)
Query: 218 FVFWTDTAARRVEFCDLDGKN-----RKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
+ + T ++E L+ K + + D V+WTD P
Sbjct: 3 HLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS-EPS 59
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITK 332
I R + G I+ +++ P G+ +D ++WT+++ IE + +DG++R+ +
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 333 GLPHPFGITL--YEDFVFWTDWHTKS--ISSANKYTGRNIKTVHSGLHFPMNIRSYHPHR 388
GL +P GI ++WTDW+ + I +++ L P
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN--------- 170
Query: 389 QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRIS 448
GLT + L + R
Sbjct: 171 ------------------------------GLTFDAFSS--------QLCWVDAGTHRAE 192
Query: 449 QLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI-RH 507
L P VL ++ A+ S +LY+ D + + + + + + H
Sbjct: 193 CLNPAQPGRRKVL--EGLQYPFAVT--SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248
Query: 508 NTKKPAGVAI 517
+ G+ I
Sbjct: 249 KQTRLYGITI 258
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 30/241 (12%), Positives = 79/241 (32%), Gaps = 22/241 (9%)
Query: 140 YLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRNLHNVLAV--DYHY------KKN 191
Y+ + + +R+ R+ + T + + ++ +Y Y +
Sbjct: 69 YVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTA 128
Query: 192 LLVWNTHIVHTGMQSV---GSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNID 248
++ I + + + + + ++ + ++ D ++ + N
Sbjct: 129 TSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188
Query: 249 KPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYW 308
KP + D V++ D + I V ++ N V+ NI N + Y
Sbjct: 189 KPVVL----DDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQ 240
Query: 309 TEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNI 368
+ + DG+ +++ I + +V++TD+ + + I
Sbjct: 241 RGGDNPALCVVKNDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297
Query: 369 K 369
K
Sbjct: 298 K 298
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 6e-20
Identities = 33/261 (12%), Positives = 78/261 (29%), Gaps = 25/261 (9%)
Query: 690 PAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTK 749
N + R + S+ + + +I + + +
Sbjct: 62 ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-------PCIYASLI 114
Query: 750 NEYIYWSDISEKTIERV-RFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMV 808
YIY+ +T + R + G E+ + + + R Y+ + +
Sbjct: 115 GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN---HYLFTCNTSDRYFYYNNPKNGQLYR 171
Query: 809 SDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE 868
D ++ + + N Y+P + + + D +R +N I +++ N
Sbjct: 172 YDTASQSEALFYDCNCYKPVVL----DDTNVYYMDVNR----DNAIVHVNINNPNP---- 219
Query: 869 TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVY 928
+ + + + Y + G + + + V YVY
Sbjct: 220 VVLTEANIEHYNVYGSLIFYQRGGDNPAL-CVVKNDGTGFKEL-AKGEFCNINVTSQYVY 277
Query: 929 WTDVQHSKIYRANKYDVKDIV 949
+TD +K Y + + I
Sbjct: 278 FTDFVSNKEYCTSTQNPDTIK 298
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 90.2 bits (223), Expect = 2e-19
Identities = 17/174 (9%), Positives = 47/174 (27%), Gaps = 16/174 (9%)
Query: 465 NVKSVVAIAWESANDSLYWA---DVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRT 521
+ I + +Y+ + R I+G + + +
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-----NHYLFTCNTSD 156
Query: 522 NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMA 581
Y+ + + + L + N +P + +Y+ + I
Sbjct: 157 RYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD----DTNVYYMDVNRDNAIVHV 212
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI 635
++ + +L ++++ + Y + DGT + L
Sbjct: 213 NINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKELA 262
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 1e-17
Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 15/172 (8%)
Query: 465 NVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKL 524
+K+ +++ Y+ + +NG++ R + N KP + +
Sbjct: 143 KIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTN----V 198
Query: 525 YWTESEYNW-IEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM 583
Y+ + + I N++ P +L N+ N G ++++ GD + +
Sbjct: 199 YYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQRGGDNPALCVVKN 253
Query: 584 DGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI 635
DG+ LA N I++ + +Y+ + T+ +
Sbjct: 254 DGTGFKELAKGEFCN-----INVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 6e-12
Identities = 27/247 (10%), Positives = 62/247 (25%), Gaps = 40/247 (16%)
Query: 1009 SRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGN 1068
+ ++ + RI + + N IY+ +
Sbjct: 75 QKITSQTFFSYDRNSLCRIKRNGHGSTVLD-------PDPCIYASLIGNYIYYLHYDTQT 127
Query: 1069 LRTF-----DMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123
+ D + +IK L + YY + + + + Q +
Sbjct: 128 ATSLYRIRIDGEEKKKIKNHYLFT--------CNTSDRYFYYNNPKNGQLYRYDTASQSE 179
Query: 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN 1183
+ + V ++Y ++ I V ++ VL E ++ N
Sbjct: 180 ALFYDC---NCYKPVVLDDTNVYYMDVN--RDN---AIVHVNINNPNPVVLTEANIEHYN 231
Query: 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWT 1243
+ + N + G K + Q +Y+T
Sbjct: 232 V----YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCNINVTSQY--------VYFT 279
Query: 1244 DWEAMSV 1250
D+ +
Sbjct: 280 DFVSNKE 286
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 6e-12
Identities = 18/185 (9%), Positives = 62/185 (33%), Gaps = 17/185 (9%)
Query: 199 IVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPR 258
++ SL ++++ ++ + A + +DG+ +K + +
Sbjct: 102 VLDPDPCIYASLIGNYIY-YLHYDTQTATSLYRIRIDGEEKKKIK-----NHYLFTCNTS 155
Query: 259 DAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHF-IE 317
D + ++ + ++ R + + + N + P + ++ +Y+ + I
Sbjct: 156 DRYFYYNNPKNG-QLYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNRDNAIV 210
Query: 318 SSDLDGSRRQQVITKGLPHPFGITLYEDFV-FWTDWHTKSISSANKYTGRNIKTVHSGLH 376
+++ + + H +Y + + ++ G K + G
Sbjct: 211 HVNINNPNPVVLTEANIEHY---NVYGSLIFYQRGGDNPALCVVK-NDGTGFKELAKGEF 266
Query: 377 FPMNI 381
+N+
Sbjct: 267 CNINV 271
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 27/219 (12%)
Query: 735 LRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDA--- 791
+ +L ++ ++ Y+Y+ + + I F R L N S +D
Sbjct: 49 IHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPC 108
Query: 792 -----IGRKIYWTDMN---AQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
IG IY+ + A ++ IDG+ K + + + +
Sbjct: 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-----IKNHYLFTCNTSDRYFYYNN 163
Query: 844 WSRTRLTNNRIEMAHMDGTNRA-VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902
N ++ + A ++ P L D+ +Y++D ++
Sbjct: 164 PK-----NGQLYRYDTASQSEALFYDCNCYKPVVL-----DDTNVYYMDVNRDNAIVHVN 213
Query: 903 ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941
+ + Y + +
Sbjct: 214 INNPNPVVLTEANIEHYNVYGSLIFYQRGGDNPALCVVK 252
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 217 DFVFWTD-TAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIER 275
V++ D + +++ N +L NI+ + + +F+ G P +
Sbjct: 196 TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQRGGDNPALCV 250
Query: 276 VEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
V+ DG+ K + I+ +Y+T+ + + + +
Sbjct: 251 VKNDGTGFKELAKGEFCN-----INVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 30/311 (9%), Positives = 90/311 (28%), Gaps = 48/311 (15%)
Query: 522 NKLYWTESEYNW-IEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEM 580
+++++ + N + N+DG+ LS + +N +Y+ +
Sbjct: 26 GEVFFSNTNDNGRLYAMNIDGSNIH-----KLSNDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 581 AGMDGSHRHILASD-------SLKNPTGLAIDLENSRLYWAN---VGLKTIEFTNLDGTR 630
+ L + L + +Y+ + ++ +DG
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE 140
Query: 631 KQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCP 690
K+ + +H ++ ++ + + + + + L + + V
Sbjct: 141 KKKIK--NHYLFTCNTSD--RYFYYNNPKNGQLYRYDTASQSEA---LFYDCNCYKPVVL 193
Query: 691 AGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKN 750
+ ++ V++ + I ++++ L +
Sbjct: 194 DDTNVY------------YMDVNRDNAIVHVNINNPNP-------VVLTEANIEHYNVYG 234
Query: 751 EYI-YWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVS 809
I Y + V+ D TG + L + ++ + +Y+TD + +
Sbjct: 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKGEFC-----NINVTSQYVYFTDFVSNKEYCT 289
Query: 810 DIDGKNAKVLF 820
+
Sbjct: 290 STQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-07
Identities = 38/346 (10%), Positives = 95/346 (27%), Gaps = 90/346 (26%)
Query: 259 DAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT--------- 309
D VF+++ ++ + +DGSN + + + I+ +++ +Y+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKNYVYYVRNNNQKITS 79
Query: 310 ----EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKY-- 363
+ + +G + + +L +++++ + T++ +S +
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYA---SLIGNYIYYLHYDTQTATSLYRIRI 136
Query: 364 TGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLS 423
G K + + F N
Sbjct: 137 DGEEKKKIKNHYLFTCNTS----------------------------------------- 155
Query: 424 PDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYW 483
+ Y K+ ++ + + E + N V + + ++Y+
Sbjct: 156 ----------DRYFYYNNPKNGQLY-RYDTASQSEALFYDCNCYKPVVL----DDTNVYY 200
Query: 484 ADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGT 542
DV + I +IN + N + Y + + V DGT
Sbjct: 201 MDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG-SL---IFYQRGGDNPALCVVKNDGT 256
Query: 543 YPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
L +N +Y+ + +K
Sbjct: 257 GFKELAKGEFC-----NINVTSQYVYFTDFVS-NKEYCTSTQNPDT 296
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 36/315 (11%), Positives = 96/315 (30%), Gaps = 56/315 (17%)
Query: 478 NDSLYWADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWT--------- 527
+ +++++ NG + +I+G+ N+ + + + D N +Y+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGS---NIHKLSNDTAMYINADK--NYVYYVRNNNQKITS 79
Query: 528 ----ESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDL--HKIEMA 581
+ N + +G T L I + IG +Y+ + +
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGST-----VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRI 134
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLK 641
+DG + +KN + + Y+ N + + + +
Sbjct: 135 RIDGEEKK-----KIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN--- 186
Query: 642 VMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT 701
K V L D ++++ ++ + N + + L + I G+L+
Sbjct: 187 -CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANIEHYNVYGSLIF----- 238
Query: 702 CSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEK 761
+ + + D ++L +++ ++Y+Y++D
Sbjct: 239 -------YQRGGDNPALCVVKNDGTGF-------KELAKGEFCNINVTSQYVYFTDFVSN 284
Query: 762 TIERVRFDMTGRERL 776
+
Sbjct: 285 KEYCTSTQNPDTIKA 299
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 44/294 (14%)
Query: 851 NNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRA 910
N R+ ++DG+N ++ + + I+ N +Y+V + I +T +
Sbjct: 36 NGRLYAMNIDGSNI----HKLSNDTAMYINADKN-YVYYVRNNNQKITSQTFFSYDRNSL 90
Query: 911 YAVQSHPYTLTVLD--------------YYVYWTDVQHSKIYRANKYDVKDIVEFAQVDR 956
++ + + TVLD YY+++ + +YR D ++ +
Sbjct: 91 CRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRI-DGEEKKKIKNHYL 149
Query: 957 PWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLL 1016
+ + + NN L + + + A + + +
Sbjct: 150 FTCNTSDRYFYY------NNPKNGQLYRYDTASQSEA----LFYDCNCYKPVVLDDTNVY 199
Query: 1017 YTS--RFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM 1074
Y R I ++++ + + +T E+ + Y + Y + L
Sbjct: 200 YMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV------YGSLIFYQRGGDNPALCVVKN 253
Query: 1075 SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN 1128
+ + L + I+ + +Y+ D + + +
Sbjct: 254 DGTGFKE---LAKGEFCN---INVTSQYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 11 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 66
Query: 84 CSLGEDERNCN 94
C G DE
Sbjct: 67 CEDGSDEWPQR 77
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-19
Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 28/104 (26%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEV 116
K CS E RC G CI + ++CD DC G DE +C F C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC----------- 49
Query: 117 GSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
S+ C + + CD C G DE
Sbjct: 50 NSS--------------TCIPQLWACDNDPDCEDGS---DEWPQ 76
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 5e-25
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDG 80
C +G CIP W CD + DC DE + P + C G CI W CD
Sbjct: 11 SCA-SGRCIPISWTCDLDDDCGDRSDESASC--AYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 81 IPDCSLGEDERNCN 94
DC DE C+
Sbjct: 68 DNDCGDNSDEAGCS 81
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-18
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 30/107 (28%)
Query: 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC--NKTCDAQKEFSCMKLAEPRP 113
+ C P++ C +G CI +W CD DC DE TC +F+C
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN------ 55
Query: 114 TEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
C + + CD C DE C
Sbjct: 56 -------------------GRCININWRCDNDNDCGDNS---DEAGC 80
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 6e-06
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ 52
CN G CI W+CDN+ DC DE C
Sbjct: 52 TCN-NGRCININWRCDNDNDCGDNSDEAGCSH 82
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 5e-15
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 54 SPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK 95
P K+C D+ +C CI W CD DC DE +C K
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ 52
+C R CIP+ W+CD + DC DE CP+
Sbjct: 14 QC-RNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 2e-14
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTT--GHCILKTWLC 78
+ P + + + +E++ P C EH+C CI K ++C
Sbjct: 25 ESLLDDRLDPKRIRKAGSLRHRV--EELEDPS------CDEHEHQCGGDDPQCISKLFVC 76
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSC 105
DG DC GEDE++C A +F
Sbjct: 77 DGHNDCRNGEDEKDCTLPTKAGDKFIG 103
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 18/86 (20%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
CI + CD DC GEDE C ++ D
Sbjct: 64 GDDPQCISKLFVCDGHNDCRNGEDEKDCT----------------LPTKAGDKFIGDVCF 107
Query: 83 D-CSLGEDERNCNKTCDAQKEFSCMK 107
D C+ E + ++ +
Sbjct: 108 DHCTKRRPE-HMTLAFESSSIAAFFT 132
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 1e-13
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 35/153 (22%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDC 84
C + + D + + D +C G I + CDGI DC
Sbjct: 175 LAECTFTKRRTMGYQDFADVVCYTQKADS-----PMDDFFQCVNGKYISQMKACDGINDC 229
Query: 85 SLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDG 144
DE C K F C + G C +Y C+G
Sbjct: 230 GDQSDELCCKACQ--GKGFHC---------KSGV----------------CIPSQYQCNG 262
Query: 145 KKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRN 177
+ C GE DE C S++ ++ + +
Sbjct: 263 EVDCITGE---DEVGCAGFASVAQEETEILTAD 292
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 3e-11
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDC 84
G I CD DC DE+ C C C +G CI + C+G DC
Sbjct: 213 NGKYISQMKACDGINDCGDQSDELCCKA------CQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 85 SLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSN 119
GEDE C +E + + A+
Sbjct: 267 ITGEDEVGCAGFASVAQEETEILTADMDAERRRIK 301
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 7e-07
Identities = 16/141 (11%), Positives = 27/141 (19%), Gaps = 40/141 (28%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGI 81
+ GA +++ + + C + C G
Sbjct: 140 GFQQGADTQRRFKLSDLSINSTECLHVHCRGLE-----------TSLAECTFTKRRTMGY 188
Query: 82 PDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYL 141
D + + F C+ S+
Sbjct: 189 QDFADVVCYTQKADSPMDD-FFQCV-------------------------NGKYISQMKA 222
Query: 142 CDGKKHCPRGEEGPDERHCPK 162
CDG C DE C
Sbjct: 223 CDGINDCGDQS---DELCCKA 240
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-13
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 55 PPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQ 100
P +C P E C CI + W CDG DC DE C
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA--LCHQH 45
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 9e-06
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
C CI +W+CD + DC DE
Sbjct: 12 ACA-NSRCIQERWKCDGDNDCLDNSDEAPA 40
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-13
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CS E C +G CI +W CDG PDC DE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKC 50
+G CI + W+CD DC+ DE C
Sbjct: 10 LSGECIHSSWRCDGGPDCKDKSDEENC 36
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-13
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT 96
CS + +C +G CI + W CDG DC DE + N T
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
KCN +G CIP W CD + DC DE
Sbjct: 11 KCN-SGRCIPEHWTCDGDNDCGDYSDETHA 39
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 108/707 (15%), Positives = 201/707 (28%), Gaps = 209/707 (29%)
Query: 384 YHPHR---QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYA 440
+H H + + + S F C K + P+ +L
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDC------------KDVQDMPKSILSKE 49
Query: 441 RQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAW--ESANDSLYWADVENGEINRAHING 498
+ + T+ + W S + + VE IN
Sbjct: 50 EIDHI----IMSKDAVSGTLR----------LFWTLLSKQEEMVQKFVEEVL----RINY 91
Query: 499 TFQYNVIRHNTKKPAGVAIDWRT--NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPR 556
F + I+ ++P+ + + ++LY + VS L P L Q L E R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELR 148
Query: 557 DIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616
P ++ + G+ GS + +A D + + +++W N+
Sbjct: 149 -----PAKNVL-------ID-----GVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNL 189
Query: 617 GLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHR--------RR--SKKTHP- 665
T L+ Q L L+ + +I R RR K +
Sbjct: 190 KNCNSPETVLE--MLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 666 --------CNEN-----NGGC--------------------SHLCLIAPKDG-------- 684
N N C +H+ L
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 685 --IRCV-CPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMV 741
++ + C +L RE + NP + +++++ + + D +++ L + +
Sbjct: 306 LLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTI-IE 360
Query: 742 ASVDVDTKNEY--IYWS--------DISEKTIERVRFDMTGRE-RLVVNDLNRTESIAVD 790
+S++V EY ++ I + + FD+ + +VVN L++ +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 791 AIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMV-WADWSRTRL 849
I + + ++ + A L+ RSIV HY + D L
Sbjct: 421 PKESTISIPSI--YLELKVKLENEYA-----LH----RSIVDHYNIPKTFDSDDLIPPYL 469
Query: 850 TN----------NRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEY 899
IE R VF +D+ + +E
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVF-----------LDFR------F-------LEQ 505
Query: 900 KTLATGRAKRAYAVQSHPYTLTVLDYYV-YWTDVQHSKIYRANKYDVKDIVEFAQVDRPW 958
K A A + TL L +Y Y D + Y V I++F
Sbjct: 506 KIRHDSTAWNASGSILN--TLQQLKFYKPYICD--NDPKYERL---VNAILDF------- 551
Query: 959 LVRAAQN-ISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADR 1004
L + +N I + L I A +
Sbjct: 552 LPKIEENLICSKYTD------LLRIALMAEDE-------AIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 1e-08
Identities = 101/673 (15%), Positives = 187/673 (27%), Gaps = 215/673 (31%)
Query: 184 VDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILI 243
Y YK I+ +V +F + D+ + IL
Sbjct: 14 HQYQYKD--------ILSVFED-------AFVDNF-----------DCKDVQDMPKSILS 47
Query: 244 ANNIDKPRAVIVHPRDA-----FVFWTDWGKTPKIERVEMDGSNRKVILTENIFW----- 293
ID I+ +DA +FWT K ++ + ++ +L N +
Sbjct: 48 KEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPI 98
Query: 294 ------PNGLTIDFEE--DRLYWTE---AKHHFIESSDLDGSRRQQV--ITKGL----PH 336
P+ +T + E DRLY AK++ SR Q + + L P
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRLQPYLKLRQALLELRPA 150
Query: 337 PFGITLY------------------------EDFVFWTDWHTKSISSANKYTGRNI---- 368
+ + + +FW ++ N + +
Sbjct: 151 K-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETVLEML 202
Query: 369 KTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHR----------------- 411
+ + + RS H + H + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 412 FTCQCPLGLT-----------------LSPDNKSCSESPEELL-IYARQKDLRISQLTEP 453
F C + LT +S D+ S + +P+E+ + + D R L P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--P 319
Query: 454 SPTFETVLPVMNVKSVVAIAWESANDSL----YWADVENGEINRAHINGTFQY---NVIR 506
T P ++I ES D L W V ++ I + R
Sbjct: 320 -REVLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYR 372
Query: 507 HNTKK----PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNP 562
+ P I L W + + + V ++ + L + E
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKEST------ 425
Query: 563 IGGIMYWCSWGDLH---KIEMAGMDGSHRHILASDSLK---NPTGLAIDLENSRLYWAN- 615
S ++ K+++ HR I+ ++ + L + Y+ +
Sbjct: 426 -------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSH 476
Query: 616 VGLKTIEFTNLDGTRKQTLIALHHLKVMT---KVVGLTDI--DIFHRRRSKKTHPCNENN 670
+G HHLK + ++ + D F K H N
Sbjct: 477 IG--------------------HHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWN 515
Query: 671 GGCSHLCLIAP----KDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVE 726
S L + K I P L + L+ S+ + +I+L E
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 727 YRYPIVLPLRQLK 739
+Q++
Sbjct: 576 DEAIFEEAHKQVQ 588
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-12
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 54 SPPKKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDERNCNKTC 97
+ C+ + +C G CI + CDG+ DC DE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRP 46
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP 55
KC +CI ++++CD +DC DE CP P
Sbjct: 13 KCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPP 47
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-12
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 56 PKKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNCNKT 96
+C P + RC+ G C + WLCDG PDC G DE C +
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-08
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQA 53
G C P W CD DC+ G DE C +
Sbjct: 17 GAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-12
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 56 PKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCN 94
P C DE +C G CI W CDG DC DE++C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+C G CIP +W+CD + DC DE C
Sbjct: 10 QCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTES 529
+A+ ++Y AD N + + Q + P GVA+D + +Y T++
Sbjct: 113 LAV---DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT 168
Query: 530 EYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRH 589
+ N + + +L + +++ P IAV+ G + Y +++ +
Sbjct: 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV-YVTEHNT-NQVVKLLAGSTTST 226
Query: 590 ILASDSLKNPTGLAIDLENSRLYWANVG 617
+L L P +A+D + +Y A+ G
Sbjct: 227 VLPFTGLNTPLAVAVD-SDRTVYVADRG 253
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 15/182 (8%)
Query: 719 RQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV 778
R ++L VLP L + VDT+ +Y +D + V+ + + V+
Sbjct: 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRV--VKLAAGSKTQTVL 144
Query: 779 --NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
LN + +AVD G +Y TD + ++ + + N VL + ++ P I V
Sbjct: 145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EA 202
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKH 895
G + + + N++ T V + P +A+D +Y D
Sbjct: 203 GTVYVTEHN-----TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT--VYVADRGND 255
Query: 896 TI 897
+
Sbjct: 256 RV 257
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 9/166 (5%)
Query: 470 VAIAWESANDSLYWADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTE 528
VA+ + ++Y G + + T + + +P G+A+D +Y T+
Sbjct: 29 VAV---DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTD 84
Query: 529 SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
+ ++ T+L + L+ P +AV+ G + Y G+ +++ +
Sbjct: 85 FNNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVDTQGAV-YVADRGN-NRVVKLAAGSKTQ 141
Query: 589 HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTL 634
+L L +P G+A+D +Y + + + + L
Sbjct: 142 TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVL 186
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 15/201 (7%)
Query: 743 SVDVDTKNEYIYWSDISE-KTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDM 801
V VD+ +Y + + ++ TG L N L + + +AVD G +Y TD
Sbjct: 28 GVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF 85
Query: 802 NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861
N + + ++ N VL + L P + V G + AD NNR+
Sbjct: 86 NNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRG-----NNRVVKLAAGS 138
Query: 862 TNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE-YKTLATGRAKRAYAVQSHPYT 919
+ V T + P +A+D S N +Y DT + + + + + + + P+
Sbjct: 139 KTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG 196
Query: 920 LTV-LDYYVYWTDVQHSKIYR 939
+ V VY T+ +++ +
Sbjct: 197 IAVDEAGTVYVTEHNTNQVVK 217
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 52/305 (17%), Positives = 99/305 (32%), Gaps = 72/305 (23%)
Query: 552 LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
P +AV+ G + Y S G ++ + +L + L P GLA+D +
Sbjct: 23 RLSPSGVAVDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TV 80
Query: 612 YWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNG 671
Y + + + G+ QT++ L +P
Sbjct: 81 YVTDFNNRVVTL--AAGSNNQTVLPFDGLN----------------------YPE----- 111
Query: 672 GCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQT--DKIRQISLDVEYRY 729
G+ V G + V+ +++ +++ + +
Sbjct: 112 ------------GL-AVDTQGA----------------VYVADRGNNRVVKLAAGSKTQT 142
Query: 730 PIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAV 789
VLP L V VD +Y +D + ++ + + L D+ IAV
Sbjct: 143 --VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV 199
Query: 790 DAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRL 849
D G +Y T+ N ++ + VL + L P ++ V + AD
Sbjct: 200 DEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRG---- 253
Query: 850 TNNRI 854
N+R+
Sbjct: 254 -NDRV 257
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 786 SIAVDAIGRKIYWTDM-NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADW 844
+AVD+ G +Y T ++ VL + LY+P+ + V G G + D+
Sbjct: 28 GVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDF 85
Query: 845 SRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT 904
+ N + +A + + +P LA+D +Y D + + K A
Sbjct: 86 N-----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA--VYVADRGNNRV-VKLAAG 137
Query: 905 GRAKRAYAVQ--SHPYTLTVL-DYYVYWTDVQHSKIYRANKYD----VKDIVEFAQVDRP 957
+ + + P + V VY TD ++++ K + + ++ F + P
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV---KLEAESNNQVVLPFTDITAP 194
Query: 958 W 958
W
Sbjct: 195 W 195
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 202 TGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
G+ L+VD V+ D RV K + +L ++ P V V
Sbjct: 105 DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-N 162
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
V+ TD ++ ++E + +N+ V+ +I P G+ +D E +Y TE + +
Sbjct: 163 VYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLA 220
Query: 322 DGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSI---SSANKYT 364
+ + GL P + + D V+ D + +S +
Sbjct: 221 GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 1025 RRISLDTADLLPVTLPFPE--YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP 1082
R ++L LPF Y + D ++ +Y AD + + + S
Sbjct: 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVD---TQGAVYVADRGNNRVVKLA-AGSKTQTV 143
Query: 1083 IPLMNDTIRDNFV-IDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYP 1140
+P + V +D + N+Y D+ + + ++ ++ +L D+ P IAV
Sbjct: 144 LPF-TGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201
Query: 1141 RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
G ++ + + ++ K+ + TVL L P +A+D R ++ AD
Sbjct: 202 A-GTVYVTEHN---TN---QVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRG 253
Query: 1201 NKRI 1204
N R+
Sbjct: 254 NDRV 257
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-12
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG--HCILKTWLC 78
C T C+P +W CD + DC G DE C + +G
Sbjct: 15 SCPGTHVCVPERWLCDGDKDCADGADESIAAG------CLYNSTGSGSGSGSTEELRVRL 68
Query: 79 DG 80
Sbjct: 69 AS 70
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-11
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 55 PPKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
K C P C T C+ + WLCDG DC+ G DE C
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA-AGCLYN-STGS 54
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-11
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 53 ASPPKKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDERNC 93
S K C P C H C+ + WLCDG DC+ G DE
Sbjct: 1 GSEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP 55
C T C+P +W CD + DC G DE
Sbjct: 13 SCPGTHVCVPERWLCDGDKDCADGADESIAAGCLY 47
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 15/213 (7%)
Query: 417 PLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWES 476
P G+T+S K + + K IS + V+ + S
Sbjct: 17 PYGITVSDKGK---------VWITQHKANMISCIN-LDGKITEYPLPTPDAKVMCLTI-S 65
Query: 477 ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536
++ +++ + +I R G + + + P G+ +++TE N I
Sbjct: 66 SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGR 124
Query: 537 SNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSL 596
DG S P I + +++ + + I G
Sbjct: 125 ITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQN-NAIGRITESGDITEFKIPTPA 182
Query: 597 KNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
P G+ ++ L++ + I G
Sbjct: 183 SGPVGITKGNDD-ALWFVEIIGNKIGRITTSGE 214
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 55/334 (16%), Positives = 104/334 (31%), Gaps = 56/334 (16%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT 309
P + V + V+ T I + +DG + L LTI + +++T
Sbjct: 17 PYGITVSDKGK-VWITQHK-ANMISCINLDGKITEYPLPTPDAKVMCLTIS-SDGEVWFT 73
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSISSANKYTGRNI 368
E + I G ++ + P+GIT + +++T+ + I + T
Sbjct: 74 ENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG---RIT---- 126
Query: 369 KTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKS 428
G IR Y + +Y P +TL DN
Sbjct: 127 ---DDG-----KIREYELPNKGSY------------------------PSFITLGSDNA- 153
Query: 429 CSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVEN 488
L + ++ I ++T S V I +D+L++ ++
Sbjct: 154 --------LWFTENQNNAIGRIT-ESGDITEFKIPTPASGPVGITK-GNDDALWFVEIIG 203
Query: 489 GEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLF 548
+I R +G I +P + L++TE N I +
Sbjct: 204 NKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPI 262
Query: 549 WQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAG 582
+EP I + I + + K+ +
Sbjct: 263 QIKSAEPHGICFDG-ETIWFAMECDKIGKLTLIK 295
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 56/312 (17%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
V+ T A + +LDGK + + K + + D V++T+ KI R+
Sbjct: 28 VWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTENA-ANKIGRITK 85
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G ++ L P G+T +++TE + I DG R+ + +P
Sbjct: 86 KGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPS 144
Query: 339 GITLYEDFVFW-TDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA 397
ITL D W T+ +I + T T P S
Sbjct: 145 FITLGSDNALWFTENQNNAIG---RITESGDITEFKI---------------PTPASG-- 184
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTF 457
P+G+T D+ L + +I ++T S
Sbjct: 185 -------------------PVGITKGNDDA---------LWFVEIIGNKIGRIT-TSGEI 215
Query: 458 ETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAI 517
AI A L++ + +I R N + I+ + +P G+
Sbjct: 216 TEFKIPTPNARPHAITA-GAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF 274
Query: 518 DWRTNKLYWTES 529
D +++
Sbjct: 275 D--GETIWFAME 284
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 13/173 (7%)
Query: 1059 IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118
++ ++ + ++ P+P + + I +++ ++ + I
Sbjct: 28 VWITQHKANMISCINLDGKITEYPLPTPDAKVMC-LTIS-SDGEVWFTENAANKIGRITK 85
Query: 1119 DGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE 1177
G K+ L N P I P G ++++ +I ++ DG R +
Sbjct: 86 KGIIKEYTLPNPDSAPYGITEGPN-GDIWFT------EMNGNRIGRITDDGKIREYELPN 138
Query: 1178 DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
++P+ + + L++ ++ N I G + I A P G++
Sbjct: 139 KGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 19/202 (9%)
Query: 744 VDVDTKNEYIYWSDISEKTIERVRFDMTG--RERLVVNDLNRTESIAVDAIGRKIYWTDM 801
+ + + +++++ + I R G +E + N + I G I++T+M
Sbjct: 62 LTIS-SDGEVWFTENAANKI--GRITKKGIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM 117
Query: 802 NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861
N I DGK + P I + + + + NN I G
Sbjct: 118 NGNRIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQ-----NNAIGRITESG 171
Query: 862 TNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ--SHPY 918
T P + D L++V+ + I + +G + P+
Sbjct: 172 DITEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKI-GRITTSGEITEFKIPTPNARPH 228
Query: 919 TLTVLDY-YVYWTDVQHSKIYR 939
+T +++T+ +KI R
Sbjct: 229 AITAGAGIDLWFTEWGANKIGR 250
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 51/361 (14%), Positives = 107/361 (29%), Gaps = 80/361 (22%)
Query: 770 MTGR--ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRP 827
M + E + N I V G+ ++ T A I ++DGK + +
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDKGK-VWITQHKANMISCINLDGKITEYPLPTPDAKV 59
Query: 828 RSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPK 886
+ + G + + + + N+I G + P + + +
Sbjct: 60 MCLTIS-SDGEVWFTENA-----ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD-- 111
Query: 887 LYWVDTSKHTIEYKTLATGRAKRAY--AVQSHPYTLTV-LDYYVYWTDVQHSKIYRANKY 943
+++ + + + I + G+ + S+P +T+ D +++T+ Q++ I R
Sbjct: 112 IWFTEMNGNRI-GRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR---I 167
Query: 944 DV-KDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002
DI EF PT + P GI
Sbjct: 168 TESGDITEFK---------------------------------IPTPA--SGPVGITKGN 192
Query: 1003 DRRSCFSRTREFLLYTSRF-GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNL 1058
D L + I RI+ T +P P +I +
Sbjct: 193 DDA---------LWFVEIIGNKIGRITTSGEITEFKIPTPNARP---HAITAG---AGID 237
Query: 1059 IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID---WVA---NNIYYIDSQMHT 1112
++F + + + ++ PI + + W A + I +
Sbjct: 238 LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLIKDN 297
Query: 1113 I 1113
+
Sbjct: 298 M 298
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 20/195 (10%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV--NDLNRTESIAVDAIGRKIYWTD 800
+ N I++++++ I R G+ R N + I + + +++T+
Sbjct: 103 GITEG-PNGDIWFTEMNGNRI--GRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158
Query: 801 MNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860
I G + P I + + + N+I
Sbjct: 159 NQNNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEII-----GNKIGRITTS 212
Query: 861 GTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SH 916
G T P + + L++ + + I + + Y +Q +
Sbjct: 213 GEITEFKIPTPNARPHAITAGAGID--LWFTEWGANKI-GRLTSNNII-EEYPIQIKSAE 268
Query: 917 PYTLTVLDYYVYWTD 931
P+ + +++
Sbjct: 269 PHGICFDGETIWFAM 283
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 22/213 (10%)
Query: 1022 GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST 1078
I RI+ LP P I I+F +M +
Sbjct: 78 NKIGRITKKGIIKEYTLPNPDSAP---YGITEG---PNGDIWFTEMNGNRIGRITDDGKI 131
Query: 1079 RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIA 1137
R +P + N +++ ++Q + I G + + P+ I
Sbjct: 132 REYELPNKGSYPSF-ITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGIT 189
Query: 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197
L++ KI ++ G + A P+ + L++
Sbjct: 190 KGND-DALWFVEII------GNKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFT 241
Query: 1198 DSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSV 1228
+ +I + I P+G+
Sbjct: 242 EWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF 274
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 25/211 (11%), Positives = 65/211 (30%), Gaps = 18/211 (8%)
Query: 1022 GVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI 1080
+I I+LD + LP P+ + + S ++F + + + +
Sbjct: 36 NMISCINLDG-KITEYPLPTPDAKVMCLTIS---SDGEVWFTENAANKIGRITKKGIIKE 91
Query: 1081 KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVY 1139
+P + +I++ + + I DG+ ++ + P I +
Sbjct: 92 YTLPNPDSAPYG-ITEG-PNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG 149
Query: 1140 PRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199
L+++ I ++ G + + P + L++ +
Sbjct: 150 SD-NALWFTENQ------NNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEI 201
Query: 1200 TNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
+I G + I P+ ++
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITA 232
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 56/326 (17%)
Query: 293 WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTD 351
P G+T E+ ++++T+ K + I S D G ++ + + + +++T+
Sbjct: 21 GPYGITSS-EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTE 79
Query: 352 WHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHR 411
I K + + T +P+ P+
Sbjct: 80 NGANKIG---KLSKKGGFTE-----YPLPQPDSGPY------------------------ 107
Query: 412 FTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVA 471
G+T + + + + RI +LT T
Sbjct: 108 -------GITEGLNGD---------IWFTQLNGDRIGKLT-ADGTIYEYDLPNKGSYPAF 150
Query: 472 IAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEY 531
I ++++L++ + +N I R G + + N P G+ L++ E
Sbjct: 151 ITL-GSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMG 208
Query: 532 NWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL 591
N I G + P I I ++ WG ++I D + +
Sbjct: 209 NKIGRITTTGEISEYDIPTPNARPHAITAGKNSEI-WFTEWGA-NQIGRITNDNTIQEYQ 266
Query: 592 ASDSLKNPTGLAIDLENSRLYWANVG 617
P G+ + +++A
Sbjct: 267 LQTENAEPHGITFGKDG-SVWFALKC 291
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 4/154 (2%)
Query: 476 SANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIE 535
S + +++ + +I+ +G + + K + + +++TE+ N I
Sbjct: 28 SEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SLGDIWFTENGANKIG 86
Query: 536 VSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDS 595
+ G + Q S P I G I W + + +I DG+ +
Sbjct: 87 KLSKKGGFTEYPLPQPDSGPYGITEGLNGDI--WFTQLNGDRIGKLTADGTIYEYDLPNK 144
Query: 596 LKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
P + + +N L++ +I G
Sbjct: 145 GSYPAFITLGSDN-ALWFTENQNNSIGRITNTGK 177
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 48/317 (15%), Positives = 94/317 (29%), Gaps = 57/317 (17%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT 309
P + V++T KI ++ G ++ + L + +++T
Sbjct: 22 PYGITSSEDGK-VWFTQHK-ANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SLGDIWFT 78
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSISSANKYTGR-N 367
E + I G + + + P+GIT + +++T + I K T
Sbjct: 79 ENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIG---KLTADGT 135
Query: 368 IKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNK 427
I P +TL DN
Sbjct: 136 IYEYDLPNKGSY-------------------------------------PAFITLGSDNA 158
Query: 428 SCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVE 487
L + ++ I ++T + E N + V I + +L++ ++
Sbjct: 159 ---------LWFTENQNNSIGRIT-NTGKLEEYPLPTNAAAPVGITS-GNDGALWFVEIM 207
Query: 488 NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLL 547
+I R G I +P + + +++++TE N I D T
Sbjct: 208 GNKIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQ 266
Query: 548 FWQNLSEPRDIAVNPIG 564
+EP I G
Sbjct: 267 LQTENAEPHGITFGKDG 283
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 47/347 (13%), Positives = 96/347 (27%), Gaps = 80/347 (23%)
Query: 777 VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
+ + I G+ +++T A I D G+ + + ++V L
Sbjct: 15 LSIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SL 72
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKH 895
G + + + N+I G P + + + +++ +
Sbjct: 73 GDIWFTENG-----ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD--IWFTQLNGD 125
Query: 896 TIEYKTLATGRAKR--AYAVQSHPYTLTV-LDYYVYWTDVQHSKIYRANKYDVKDIVEFA 952
I K A G S+P +T+ D +++T+ Q++ I R
Sbjct: 126 RI-GKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR------------- 171
Query: 953 QVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTR 1012
+ + PTN A P GI D
Sbjct: 172 -------ITNTGKLEE---------------YPLPTNA--AAPVGITSGNDGA------- 200
Query: 1013 EFLLYTSRF--GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG 1067
L+ I RI+ + +P P +I + I+F + +
Sbjct: 201 ---LWFVEIMGNKIGRITTTGEISEYDIPTPNARP---HAITAG---KNSEIWFTEWGAN 251
Query: 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVID-----WVA--NNIYYID 1107
+ ++ + + N W A I ++
Sbjct: 252 QIGRITNDNTIQEYQLQTENAEPHG-ITFGKDGSVWFALKCKIGKLN 297
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
+++T+ A ++ G + + P + F T +I ++
Sbjct: 75 IWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWF-TQLN-GDRIGKLTA 132
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
DG+ + L +P +T+ ++ L++TE +++ I G + + P
Sbjct: 133 DGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPV 191
Query: 339 GITL-YEDFVFWTDWHTKSIS 358
GIT + +++ + I
Sbjct: 192 GITSGNDGALWFVEIMGNKIG 212
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 22/213 (10%)
Query: 1022 GVIRRISLDTADL---LPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST 1078
I ++S LP P I I+F + + +
Sbjct: 83 NKIGKLSKKGGFTEYPLPQPDSGP---YGITEG---LNGDIWFTQLNGDRIGKLTADGTI 136
Query: 1079 RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIA 1137
+P + N +++ ++Q ++I + G+ ++ + + P+ I
Sbjct: 137 YEYDLPNKGSYPAF-ITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGIT 194
Query: 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197
G L++ KI ++ G + A P+ + K +++
Sbjct: 195 SGN-DGALWFVEIM------GNKIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFT 246
Query: 1198 DSTNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
+ +I ++ + P+G++
Sbjct: 247 EWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 9e-07
Identities = 48/312 (15%), Positives = 104/312 (33%), Gaps = 55/312 (17%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
V++T A ++ D G+ ++ + K +IV +++T+ G KI ++
Sbjct: 33 VWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENG-ANKIGKLSK 90
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G + L + P G+T +++T+ I DG+ + + +P
Sbjct: 91 KGGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPA 149
Query: 339 GITLYED-FVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA 397
ITL D +++T+ SI + T +G + +
Sbjct: 150 FITLGSDNALWFTENQNNSIG---RITN-------TG----------------KLEEYPL 183
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTF 457
P + P+G+T D L + +I ++T +
Sbjct: 184 PTNAAA-------------PVGITSGNDGA---------LWFVEIMGNKIGRIT-TTGEI 220
Query: 458 ETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAI 517
AI N +++ + +I R + T Q ++ +P G+
Sbjct: 221 SEYDIPTPNARPHAITA-GKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279
Query: 518 DWRTNKLYWTES 529
+ +++
Sbjct: 280 G-KDGSVWFALK 290
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/210 (12%), Positives = 69/210 (32%), Gaps = 25/210 (11%)
Query: 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK 1081
+ +L D P I ++F ++ + + D S +
Sbjct: 8 FYLEEFNLSIPDSGP---------YGITSS---EDGKVWFTQHKANKISSLDQSGRIKEF 55
Query: 1082 PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYP 1140
+P + + ++ +I++ ++ + I G + + P I
Sbjct: 56 EVPTPDAKVMC-LIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL 113
Query: 1141 RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
G ++++ +I K+ DG+ + ++P + + L++ ++
Sbjct: 114 -NGDIWFTQLN------GDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQ 165
Query: 1201 NKRIEYCDFFGRSRKIVISKV--APYGLSV 1228
N I G+ + + AP G++
Sbjct: 166 NNSIGRITNTGKLEEYPLPTNAAAPVGITS 195
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
+++T+ + GK + + N P + A +++ + KI R+
Sbjct: 159 LWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM-GNKIGRITT 216
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G + + P+ +T + +++TE + I D + ++ + P
Sbjct: 217 TGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPH 275
Query: 339 GITLYED-FVFWTDWHT 354
GIT +D V++
Sbjct: 276 GITFGKDGSVWFALKCK 292
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 42/336 (12%), Positives = 101/336 (30%), Gaps = 75/336 (22%)
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--AVQSHPYTLTVL-DYYVYW 929
P + +++ + I +GR K + L V +++
Sbjct: 21 GPYGITSSEDGK--VWFTQHKANKI-SSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWF 77
Query: 930 TDVQHSKIYRANKYDVK-DIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT 988
T+ +KI + K E+ P
Sbjct: 78 TENGANKIGK---LSKKGGFTEY-----------------------------------PL 99
Query: 989 NFTCACPTGILLSADRRSCFSRTREFLLYTSRFG-VIRRISLDTADL---LPVTLPFPEY 1044
+ P GI + + +T G I +++ D LP +P
Sbjct: 100 PQPDSGPYGITEGLNGD---------IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYP-- 148
Query: 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104
+ I S N ++F + ++ ++ + P+P ++
Sbjct: 149 -AFITLG---SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVG-ITSG-NDGALW 202
Query: 1105 YIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163
+++ + I + G+ + + P AI ++++ WG +I +
Sbjct: 203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGK-NSEIWFTEWG------ANQIGR 255
Query: 1164 VYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199
+ D + + ++ + A P+ + K +++A
Sbjct: 256 ITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFALK 290
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 23/204 (11%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV--NDLNRTESIAVDAIGRKIYWTD 800
+ N I+++ ++ I + G N + I + + +++T+
Sbjct: 108 GITEG-LNGDIWFTQLNGDRI--GKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTE 163
Query: 801 MNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860
+I GK + N P I G + + + N+I
Sbjct: 164 NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIM-----GNKIGRITTT 217
Query: 861 GTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SH 916
G T P + + +++ + + I + + Y +Q +
Sbjct: 218 GEISEYDIPTPNARPHAITAGKNSE--IWFTEWGANQI-GRITNDNTIQE-YQLQTENAE 273
Query: 917 PYTLTV-LDYYVYWTDVQHSKIYR 939
P+ +T D V++ KI +
Sbjct: 274 PHGITFGKDGSVWFAL--KCKIGK 295
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 5e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC C + C+C G +L D +SC
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC C +RC C G +L +D ++C
Sbjct: 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSC 36
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
C C + C C G L D+KSC +
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER 41
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-05
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C+ DNGGC C + C C
Sbjct: 1 CSLDNGGCDQFCREERS--EVRCSCAHG 26
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-10
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 971 ACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C NG C C + N C+C G L+ +++SC
Sbjct: 1 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-09
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
CN NG C C + + + C C G L E++++C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C NG C C K VC C +
Sbjct: 2 CNIKNGRCEQFCKNSADNK-VVCSCTEG 28
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSC 429
C C + ++ C C G L+ + KSC
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 54 SPPKKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNC 93
S C P + RC+ G C + WLCDG PDC G DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-07
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
G C P W CD DC+ G DE C
Sbjct: 18 PGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 59 CSPDEHRCTTGH--CILKTWLCDGIPDCSLGEDERNCN 94
C E C CI +W CDG DC GEDE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-07
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+ CIP W+CD E DC+ GEDE C
Sbjct: 10 AHSTQCIPVSWRCDGENDCDSGEDEENCG 38
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-10
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSHLCLRNP-TNFTCACPTGILLSADRRSC 1007
C + NGGC C + T +C C G L AD SC
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-09
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C NGGC C C C G L D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSC 429
C C + + +C+C G +L D SC
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C +NGGC C TK C C +
Sbjct: 2 CVNENGGCEQYCSDHTGTK-RSCRCHEG 28
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 4e-10
Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 5/97 (5%)
Query: 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHC 71
Q + + + ++ D + C E C C
Sbjct: 9 QNLHIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPEC 68
Query: 72 ILKTWLCDGIPDCSLGEDE--RNC-NKTCDAQKEFSC 105
I CDG DC G DE C ++
Sbjct: 69 IHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG 105
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 2e-07
Identities = 18/143 (12%), Positives = 26/143 (18%), Gaps = 6/143 (4%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPD-EHRCTTGHCILKTW--LC 78
CI CD E DC G DE + T C
Sbjct: 62 RGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAI 121
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVR--APRKDCF 136
I + A + + T F + +
Sbjct: 122 VTITAAH-RKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSE 180
Query: 137 SKKYLCDGKKHCPRGEEGPDERH 159
+CD +
Sbjct: 181 GYGVICDFNLGDDDHADCKIVVP 203
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-10
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 8e-08
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NG C C + + C C G L ++ + C
Sbjct: 4 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKAC 39
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
C C ++ C C G TL+ + K+C +
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 44
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C+ DNG C C + VC C
Sbjct: 4 CSLDNGDCDQFCHEEQN--SVVCSCARG 29
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-10
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C + NGGC C + +C C G L AD SC
Sbjct: 6 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 44
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-09
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C NGGC C C C G L D +C+
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPE 434
C C + + +C+C G +L D SC+ + E
Sbjct: 15 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 49
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
C +NGGC C TK C C +
Sbjct: 6 LICVNENGGCEQYCSDHTGTK-RSCRCHE 33
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-09
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 53 ASPPKKCSPDEHRCTTG-HCILKTWLCDGIPDCSLGEDERNC 93
S KCS C C+ + C+G+ DC DE NC
Sbjct: 1 GSQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-07
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
C C+P C+ DC DE C
Sbjct: 13 PCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 1e-08
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 10/139 (7%)
Query: 40 DCEMGEDEMKCPQASPPKKCSPDEHRCTT--GHCILKTWLCDGIPDCSLG--EDERNCNK 95
+ + E + + + C +C CI +CDG DC ED C+
Sbjct: 35 EHFVSEIDARVTKIEGTH-CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93
Query: 96 TCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPR---GE 152
+ + + R+ F+ + GE
Sbjct: 94 SVVKAGNVFSGTSTWHGCL--AREDHVTRITITASKRRKFFTARIWLRALVESELERHGE 151
Query: 153 EGPDERHCPKRVSLSNKKY 171
+ + ++++
Sbjct: 152 NVTSSFNAKGYYNFASRRL 170
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-08
Identities = 21/141 (14%), Positives = 28/141 (19%), Gaps = 17/141 (12%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
CI CD DC DE P C + TW
Sbjct: 62 GNEQECISDLLVCDGHKDCHNAHDE-------DPDVCDTSVVKAGNVFSGTSTW-----H 109
Query: 83 DCSLGEDERNCN--KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKY 140
C ED +K F+ + A F+ +
Sbjct: 110 GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRR 169
Query: 141 LCDGKKHCPRGEEGPDERHCP 161
L + C
Sbjct: 170 L---ILLPTDDHDDHLAVVCS 187
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCS++C + C CP G L A RR
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ CS LC+ + C C G L ++C
Sbjct: 73 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C P CS +C+ + + CQC G L P K+C
Sbjct: 72 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C +NNGGCS++C G C+CP G L R C
Sbjct: 32 CLDNNGGCSYVCNDLK-IGYECLCPDGFQLVAQ-RRC 66
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 29/155 (18%)
Query: 477 ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536
D++ D N EI ++ F P G++ID + T+ + +
Sbjct: 67 EEDTILVIDPNNAEILQSSGKNLFYL---------PHGLSID-TDGNYWVTDVALHQVFK 116
Query: 537 SNLDGTYPTLLFW----------QNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGS 586
+ LL + +P D+AV P G ++ +I G
Sbjct: 117 LDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176
Query: 587 H---------RHILASDSLKNPTGLAIDLENSRLY 612
P LA+ +L
Sbjct: 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 29/177 (16%)
Query: 1100 ANNIYYIDSQMHTINVARSDGQHKKILV-----------NDLMEPLAIAVYPRRGLLFYS 1148
N + D +H + + +L+ N +P +AV P G +F S
Sbjct: 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160
Query: 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLVEED---------LAFPNELAIDFKQRRLFWADS 1199
Y NS +I + G + T EE + P+ LA+ +L AD
Sbjct: 161 DG--YCNS---RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215
Query: 1200 TNKRIEYCDFFGRS--RKIVISKVAPYGLSVRQSPGKAFIVE--LYWTDWEAMSVVI 1252
N RI+ + R+I + ++ PG F V Y+ D E + +
Sbjct: 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 39/234 (16%)
Query: 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV---NDLNRTESIAVDAIGRKIY 797
D+K Y + + D E L N +++D G +
Sbjct: 47 WDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YW 105
Query: 798 WTDMNAQTIMVSDIDGKNAKVLFWLN----------LYRPRSIVVHYGLGLMVWADWSRT 847
TD+ + D K +L +P + V G + +D
Sbjct: 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-- 163
Query: 848 RLTNNRIEMAHMDGTNRAVF----------ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
N+RI G + + P LA+ + +L D I
Sbjct: 164 --CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRI 220
Query: 898 -----EYKTLAT-----GRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941
+ K + +A+ P L ++ Y+ D + + + N
Sbjct: 221 QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN 274
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTK-----KPAGVAIDWRTNKL 524
VA+ +A + + AD N I G F++ + P VA+ + +
Sbjct: 35 VAV---NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDI 91
Query: 525 YWTESEYN-WIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM 583
TE I++ N G + L PR + V+ G I + ++ +
Sbjct: 92 IVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRI--IVVECKVMRVIIFDQ 149
Query: 584 DGSH-RHILASDSLKNPTGLAIDLEN 608
+G+ S L+ P G+ ++ +
Sbjct: 150 NGNVLHKFGCSKHLEFPNGVVVNDKQ 175
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 14/142 (9%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT--KKPAGVAIDWRTNKLYWT 527
V + + + + + NG + + + P GV ++ +++ +
Sbjct: 126 VTV---DNKGRIIVVECKVMRVIIFDQNGNVL-HKFGCSKHLEFPNGVVVN-DKQEIFIS 180
Query: 528 ESEYNWIEVSNLDGTYPTLLFWQN---LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMD 584
++ + ++V N +G Y L + P + +N G I + + + D
Sbjct: 181 DNRAHCVKVFNYEGQY--LRQIGGEGITNYPIGVGINSNGEI-LIADNHNNFNLTIFTQD 237
Query: 585 GSH-RHILASDSLKNPTGLAID 605
G + + +A+
Sbjct: 238 GQLISALESKVKHAQCFDVALM 259
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC+H CL C+C G L D C
Sbjct: 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 8e-06
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGC-SHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C C + +C P +F C CP G + +SC
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 14/151 (9%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVF-WTDWGKTPKIERVE 277
+F T+ + DG + + A K + V + P + V+
Sbjct: 45 IFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102
Query: 278 MDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSD----------LDGSRRQ 327
DG+ ++ + + NG+T + + ++ I D +
Sbjct: 103 SDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161
Query: 328 QVITKGLPHPFGITLYEDFVFWTDWHTKSIS 358
P G+ + +F++ ++ +
Sbjct: 162 SNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 16/198 (8%)
Query: 753 IYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812
I+ ++ I V G +++ + +A + G + T NA +I V +
Sbjct: 45 IFVTNHEVGEI--VSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV 101
Query: 813 GKNAKVLFWLNLYRPRSI--VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE 870
+ V L L + + + AD R + I++ G+
Sbjct: 102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI--WLIDVVQPSGSIWLEHPML 159
Query: 871 VIWPSCLAIDYS-----DNPKLYWVDTSKHTI-EYKTLATGRA--KRAYAVQSHPYTLTV 922
S + LY +T K + +T + + Q++
Sbjct: 160 ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAF 219
Query: 923 L-DYYVYWTDVQHSKIYR 939
+ +Y ++ + R
Sbjct: 220 DVEGNLYGATHIYNSVVR 237
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C HLC + C+C G L DR SC
Sbjct: 13 SGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 5e-04
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 389 QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430
+ C H+C + C C G L D SC
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 21/156 (13%)
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTE---- 528
++ L+ DV G I + + + PA + I + +L+
Sbjct: 51 NFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGDF 108
Query: 529 SEYNWIEVSNLDGTYPTLLFWQNLSEPR--DIAVNPIGGIMYWCSWGDLHKIEMAGM--- 583
I + +G + + D+ + GG + D +
Sbjct: 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF--YF--TDFRGYSTNPLGGV 164
Query: 584 -----DGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
D + + + G+A+ + L+
Sbjct: 165 YYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVT 199
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554 | Back alignment and structure |
|---|
Score = 45.4 bits (106), Expect = 1e-04
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 28 CIPAQW---QCD-NEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
P ++ C + +D C +C D TG C+ + +C+G D
Sbjct: 34 LQPNKFGGTICSGDIWDQASCSSSTTCV---RQAQCGQDFQCKETGRCLKRHLVCNGDQD 90
Query: 84 CSLGEDERNCNKTCDAQKEFSCMK 107
C G DE +C ++ S +
Sbjct: 91 CLDGSDEDDCEDVRAIDEDCSQYE 114
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C S C+ P ++ C CP L+ R C
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCS-HLCLRNPTNFTCACPTGILLSADRRSC 1007
C G C C+ +F C CPTG L+ D R C
Sbjct: 125 CQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 19/165 (11%)
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN 532
AW A +L W+D+ + +GT +V+ T G A+D +L E
Sbjct: 51 AWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVD-AQQRLVHCEHGRR 107
Query: 533 WIEVSNLDGTYPTLL---FWQNLSEPRDIAVNPIGGI--------MYWCSWGDLHKIEMA 581
I S+ DG L+ + L+ P D+ V G I + S G E+A
Sbjct: 108 AITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167
Query: 582 GM-----DGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTI 621
+ L +P GLA + LY + +
Sbjct: 168 HHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGH 212
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGC-SHLCLRNPTNFTCACPTGILLSADRRSC 1007
C + C +C ++ C CP G LS + +C
Sbjct: 49 CQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N C C T +C CP G +L D C
Sbjct: 42 CQMFCNQTACPADC-DPNTQASCECPEGYILD-DGFIC 77
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTG-ILLSADRRSC 1007
N G CS +C P F C C L C
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 3e-04
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 10/182 (5%)
Query: 173 AIIRNLHNVLAVDY----HYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAA-- 226
+ HN L + + V++G+ V ++ D + T+
Sbjct: 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNN 202
Query: 227 --RRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRK 284
+ + I HP + +++ W ++ R +
Sbjct: 203 DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETT 261
Query: 285 VILTENIF-WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLY 343
+ T W + + Y H+I SD D ++ + G +
Sbjct: 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDW 321
Query: 344 ED 345
D
Sbjct: 322 VD 323
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1332 | |||
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.96 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.95 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.89 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.87 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.83 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.82 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.76 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.73 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.73 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.71 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.68 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.67 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.65 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.65 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.64 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.6 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.52 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.48 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.47 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.47 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.43 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.4 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.4 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.35 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.34 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.33 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.32 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.32 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.32 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.28 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.28 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.27 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.24 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.24 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 99.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.23 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.23 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 99.21 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.21 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.21 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 99.19 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.18 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.18 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.16 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.14 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 99.14 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.13 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.1 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.1 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.09 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.08 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.07 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.07 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 99.06 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 99.05 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 99.05 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 99.04 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 99.03 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 99.03 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 99.02 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 99.02 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 99.02 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 99.01 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 99.01 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.01 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 99.0 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 99.0 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 98.99 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 98.99 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.99 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 98.99 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 98.97 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.97 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.94 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.93 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.92 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 98.92 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 98.92 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 98.91 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.91 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.9 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.9 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.9 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.9 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.89 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 98.89 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.87 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.87 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.85 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 98.84 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.81 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.79 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.76 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.74 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 98.73 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.73 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.72 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.71 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 98.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.67 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.66 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.65 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.64 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.64 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.64 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.62 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.61 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.6 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.6 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.57 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.55 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.48 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.46 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.46 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.45 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.42 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.38 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.36 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.36 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.36 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.33 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.33 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.31 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 98.29 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 98.29 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.29 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.27 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.27 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.27 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 98.26 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.25 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.24 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.23 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.21 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 98.21 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.15 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.15 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.15 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.07 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.07 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.01 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.98 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.85 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.84 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.83 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.83 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 97.82 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 97.82 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 97.73 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.72 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.71 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.7 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.67 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.63 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.63 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.54 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.51 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.51 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.47 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.47 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.41 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 97.39 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.36 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.33 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.26 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.25 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.25 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.23 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.22 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.2 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.19 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.18 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.18 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.15 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.15 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.13 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.12 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.09 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.08 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.08 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.06 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.06 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.05 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.02 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 97.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.0 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.99 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.99 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.98 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.93 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.86 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 96.85 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.85 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.81 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.8 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.8 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.73 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.63 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.6 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.58 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.56 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.54 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 96.5 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.5 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.49 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.48 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.46 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.44 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.42 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.39 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.35 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.31 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 96.3 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.3 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 96.29 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.29 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 96.27 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.24 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 96.23 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 96.21 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.2 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.19 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 96.17 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.14 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.12 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.12 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 96.11 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.06 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 96.04 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 95.92 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.9 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.88 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 95.84 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.82 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.82 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.82 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 95.8 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 95.78 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 95.72 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.71 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.7 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.65 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 95.6 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.58 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.43 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 95.37 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.36 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 95.3 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 95.29 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.22 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 95.2 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 95.2 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 95.18 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 95.16 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.12 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 95.11 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.11 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 95.09 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 95.08 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.98 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 94.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.95 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 94.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 94.94 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 94.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.87 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 94.86 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 94.84 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.76 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.71 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.67 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.63 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.59 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.57 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 94.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.56 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.56 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 94.5 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 94.49 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.48 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 94.47 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 94.45 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 94.45 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.43 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 94.35 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 94.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.2 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.18 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 94.11 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.87 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.79 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 93.57 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 93.51 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 93.51 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 93.42 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 93.37 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 93.15 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 92.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 92.87 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 92.4 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 92.37 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 92.18 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 92.13 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 92.08 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 92.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 91.52 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.45 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 91.07 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.72 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 90.66 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 89.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 89.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 89.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 89.85 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 89.55 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 89.53 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 89.51 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 89.51 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 89.03 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 88.7 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 88.33 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 88.03 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 88.0 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 87.68 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 87.58 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 87.14 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 87.06 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 86.93 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 86.74 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 86.59 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 85.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 85.24 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 84.45 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 83.86 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 83.27 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 82.06 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 81.3 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 80.73 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 80.41 |
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-98 Score=942.95 Aligned_cols=594 Identities=32% Similarity=0.574 Sum_probs=544.2
Q ss_pred CCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCc
Q psy5806 705 NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRT 784 (1332)
Q Consensus 705 ~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p 784 (1332)
.|++||+|+++.+|++++++... ...++|++++.++.+||||+.+++|||+|...+.|+|+.++|+..++++..++..|
T Consensus 4 ~p~~~Ll~s~~~~I~~i~l~~~~-~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 4 VPEAFLLFSRRADIRRISLETNN-NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp -CCCEEEEEETTEEEEEESSCTT-CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred CCCcEEEEEeCCcEEEEECCCCC-cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 47899999999999999998754 34567888899999999999999999999999999999999999999999899999
Q ss_pred cceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCc
Q psy5806 785 ESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR 864 (1332)
Q Consensus 785 ~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~ 864 (1332)
.|||+||.+++|||+|...++|++++++|+.+++++...+..|++|||||.+|+|||+||+.. ++|+|+.|||+++
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~----~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK----PKIDRAAMDGSER 158 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSS----CEEEEEETTSCSC
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCC----CEEEEEeCCCCce
Confidence 999999999999999999999999999999999998888999999999999999999999876 8999999999999
Q ss_pred EEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCC
Q psy5806 865 AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944 (1332)
Q Consensus 865 ~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~ 944 (1332)
+++++.+.+|+||++|+.+ ++|||+|+..++|++++++|..++++...+.||+||++++++|||+||.+++|.+++|.+
T Consensus 159 ~~l~~~~~~P~GlalD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAK-RRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCCcceEEEcccc-CEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCC
Confidence 9999889999999999998 999999999999999999999998777789999999999999999999999999999998
Q ss_pred C---eEEEeeee--cCcceEEeccccCCCCCcccCCCCCCccccccCC-CCccccCCCCeeEccCCccccccCcceEEEE
Q psy5806 945 V---KDIVEFAQ--VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNP-TNFTCACPTGILLSADRRSCFSRTREFLLYT 1018 (1332)
Q Consensus 945 g---~~i~~~~~--~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p-~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~ 1018 (1332)
| +++..++. ++|+ +|++..+.+ .|+|+.+||+|+|||+++| ++|+|+||.||.|..|+++|.+ +++||||+
T Consensus 238 g~~~~~l~~~~~~p~~i~-v~~~~~q~~-~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~-~~~~Ll~s 314 (628)
T 4a0p_A 238 GQNRTIIQGHLDYVMDIL-VFHSSRQSG-WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA-PTTFLLFS 314 (628)
T ss_dssp CCSCEEEECSCCSCCEEE-EECGGGSCC-CCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC-CSSEEEEE
T ss_pred CCceEEEecCCCCcceee-eeeeccccc-ceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc-ccceeeee
Confidence 8 66766654 8999 998765555 8999999999999999999 7799999999999999999995 68999999
Q ss_pred eecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec------CCCCce
Q psy5806 1019 SRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM------NDTIRD 1092 (1332)
Q Consensus 1019 ~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~------~~~~p~ 1092 (1332)
++.. |+++.++.......++|+++++++.+||||+.+++|||+|...++|++++++ |+..+.++.. ++..|+
T Consensus 315 ~~~~-i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~-g~~~~~v~~~~~~~~~~~~~p~ 392 (628)
T 4a0p_A 315 QKSA-INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQED-GSQGFTVVVSSVPSQNLEIQPY 392 (628)
T ss_dssp ETTE-EEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC--------CCCEE
T ss_pred ccce-EEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcC-CCCceEEEEcccccccccCCcc
Confidence 9999 9999998766666788999999999999999999999999999999999987 7776666644 567899
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCC-cEEEEecCCCc
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTT-KIEKVYLDGSY 1170 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~-~I~r~~ldG~~ 1170 (1332)
||||||++++|||+|...++|++++++|+.+.+ +..++..|++|||||.+|+||||||+. .+ +|+|++|||+.
T Consensus 393 glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~-----~~~~I~r~~~dG~~ 467 (628)
T 4a0p_A 393 DLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE-----RSPKIERAALDGTE 467 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEET-----TEEEEEEEETTSCS
T ss_pred eEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCC-----CCCeEEEEeCCCCC
Confidence 999999999999999999999999999998877 556789999999999999999999987 33 89999999999
Q ss_pred eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCC
Q psy5806 1171 RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAM 1248 (1332)
Q Consensus 1171 ~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~ 1248 (1332)
+++|+.+++.+|+||+||+++++|||+|+..++|+++++||+.|+++.. +.+|+|||+ ++++||||||.++
T Consensus 468 ~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav-------~~~~ly~tD~~~~ 540 (628)
T 4a0p_A 468 REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV-------FENWLYWIDKQQQ 540 (628)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEE-------ETTEEEEEETTTT
T ss_pred cEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEE-------ECCEEEEEECCCC
Confidence 9999998899999999999999999999999999999999999999985 899999999 9999999999999
Q ss_pred EEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCCC--CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCC---CCc
Q psy5806 1249 SVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ--LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE---PNE 1323 (1332)
Q Consensus 1249 ~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q--~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~---~~~ 1323 (1332)
+|++++|.+| ++.++++.++..+++|++++...+ .+.|||..+||+|+|||++.+ .+.++|+||+||+ ++.
T Consensus 541 ~i~~~~k~~G---~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~-~~~~~C~C~~g~~l~~d~~ 616 (628)
T 4a0p_A 541 MIEKIDMTGR---EGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKG-DGTTRCSCPMHLVLLQDEL 616 (628)
T ss_dssp EEEEEETTSS---SCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECT-TSCEEEECCTTEEECTTSS
T ss_pred eEEEEECcCC---CCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCC-CCCeeeeCCCCCEECCCCC
Confidence 9999999999 788899999999999999987654 478999999999999999983 4568999999983 333
Q ss_pred cc
Q psy5806 1324 EC 1325 (1332)
Q Consensus 1324 ~c 1325 (1332)
+|
T Consensus 617 ~~ 618 (628)
T 4a0p_A 617 SC 618 (628)
T ss_dssp CE
T ss_pred cC
Confidence 66
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-96 Score=926.04 Aligned_cols=593 Identities=34% Similarity=0.670 Sum_probs=529.2
Q ss_pred ccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCc-eEEEeCCCCCcc
Q psy5806 707 SKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGR-ERLVVNDLNRTE 785 (1332)
Q Consensus 707 ~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~-~~vi~~~~~~p~ 785 (1332)
.+.|+++++.+|++++++... ....++++++.++.+||||+.+++|||+|...+.|+|+.++|+.. ++++..++..|.
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~-~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGK-ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp -CCEEEECSSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred CceEEEeccccEEEEeCCCCc-ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 568999999999999998642 134556778999999999999999999999999999999999863 677888899999
Q ss_pred ceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcE
Q psy5806 786 SIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRA 865 (1332)
Q Consensus 786 glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~ 865 (1332)
|||+||++++|||+|...++|++.+++|+.+++++...+..|++|||||.+|+||||||+.. ++|+|+.|||+.++
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~----~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV----PKIERAGMDGSSRF 163 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSS----CEEEEEETTSCSCE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCC----CEEEEEECCCCceE
Confidence 99999999999999999999999999999999998888999999999999999999999977 89999999999999
Q ss_pred EEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECC
Q psy5806 866 VFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKY 943 (1332)
Q Consensus 866 ~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~ 943 (1332)
+++.. +.+|+||++|+.+ ++|||+|...++|++++++|..++.+.. .+.||+||++++++|||+||.+++|.+++|.
T Consensus 164 ~l~~~~~~~P~Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECC
Confidence 99876 9999999999998 9999999999999999999999988876 7899999999999999999999999999999
Q ss_pred CC---eEEEeee--ecCcceEEecc-ccCCCCCcccCCCCCCccccccCCC--CccccCCCCeeEccCCccccccCcceE
Q psy5806 944 DV---KDIVEFA--QVDRPWLVRAA-QNISFPNACGSNNGGCSHLCLRNPT--NFTCACPTGILLSADRRSCFSRTREFL 1015 (1332)
Q Consensus 944 ~g---~~i~~~~--~~~i~~~~~~~-~~~~~~n~C~~~nGgCshlCl~~p~--~~~C~Cp~g~~l~~d~~tC~~~p~~~l 1015 (1332)
+| +++..++ |++|+ ++++. ||.+ .|||+.+||+|||||+++|. +|+|+||.||.|..|+++|...+++||
T Consensus 243 tg~~~~~i~~~~~~p~~i~-v~~~~~qp~~-~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIH-AFSQQRQPNA-TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SCCCCEECCSCCCCCSEEE-ECCGGGSCCC-CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCcccEEEecCCCCCcEEE-EEccccCCCc-cccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 88 4555444 38888 88764 6666 99999999999999999985 599999999999999999998789999
Q ss_pred EEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeE
Q psy5806 1016 LYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFV 1095 (1332)
Q Consensus 1016 l~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glA 1095 (1332)
||+++.. |++|+++.......++|++++.++.+||||+.+++|||+|...++|++++++ |+..++++..++..|+|||
T Consensus 321 l~~~~~~-i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~-g~~~~~v~~~~~~~p~GlA 398 (619)
T 3s94_A 321 LLARRTD-LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIA 398 (619)
T ss_dssp EEEESSC-EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEE
T ss_pred EEEcccc-eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcC-CCccEEEEECCCCCcCceE
Confidence 9999999 9999999887777788999999999999999999999999999999999988 7777888878889999999
Q ss_pred EEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE
Q psy5806 1096 IDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL 1174 (1332)
Q Consensus 1096 vDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l 1174 (1332)
|||++++|||||...++|++++++|+.+++ +..++..|++|||||.+|+||||||+. .++|+|+.|||+.++++
T Consensus 399 vD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~-----~~~I~r~~~dG~~~~~l 473 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE-----IPKIERAALDGSDRVVL 473 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEE
T ss_pred EecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC-----CCEEEEEccCCCccEEE
Confidence 999999999999999999999999998877 456889999999999999999999986 58999999999999999
Q ss_pred EecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1175 VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1175 ~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
+.+.+.+|+|||||+++++|||+|+..++|++++++|..+++++. +.+|+|||+ ++++||||||.+++|++
T Consensus 474 ~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav-------~~~~ly~tD~~~~~I~~ 546 (619)
T 3s94_A 474 VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTL-------LGDYVYWTDWQRRSIER 546 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEE-------ETTEEEEECTTSSCEEE
T ss_pred EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEE-------ECCEEEEeecCCCeEEE
Confidence 988899999999999999999999999999999999999988876 899999999 99999999999999999
Q ss_pred EEecCCCCcceEEEEecCCCCeeeEEEEeCCCCCCCCCCCCCCCCCCccceeccCCCCceeeCCCCCC---CCccccc
Q psy5806 1253 AREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE---PNEECFE 1327 (1332)
Q Consensus 1253 ~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~---~~~~c~~ 1327 (1332)
++|.+| +.++++.+++.+++|++++...|.+.|||+.+||+|+|+|++. +++++|+||.||. ++-+|.+
T Consensus 547 ~~k~~g----~~~~~~~~~~~~~~i~~~~~~~~~~~~~C~~~ng~C~~~C~~~--~~~~~C~C~~g~~l~~d~~~C~~ 618 (619)
T 3s94_A 547 VHKRSA----EREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYR--PQGLRCACPIGFELISDMKTCIV 618 (619)
T ss_dssp EESSSC----CEEEEECSCCCEEEEEEEESSCCCCCCGGGSGGGGCSSEEEEE--TTEEEEECCTTCEECSSTTCEEC
T ss_pred EEcCCC----ceEEEecCCCCCceeeecccccccccccCCCCCCChhHhhccC--CCCeEEECCCCCEECCCCCcCCC
Confidence 999998 3577888999999999999988889999999999999999998 5679999999993 3347854
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-96 Score=921.93 Aligned_cols=567 Identities=33% Similarity=0.614 Sum_probs=519.5
Q ss_pred CccceeEeeecccccccccCCCCCceeeEEeeeeccceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCC
Q psy5806 432 SPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKK 511 (1332)
Q Consensus 432 ~~~~~ll~~~~~~i~~~~l~~~~~~~~~~~p~~~~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~ 511 (1332)
.|++||||+++++|+.++|+.... ...+|+.+++++.+||||+.+++|||+|...++|+|+.++|+..++++..++..
T Consensus 4 ~p~~~Ll~s~~~~I~~i~l~~~~~--~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~ 81 (628)
T 4a0p_A 4 VPEAFLLFSRRADIRRISLETNNN--NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY 81 (628)
T ss_dssp -CCCEEEEEETTEEEEEESSCTTC--EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred CCCcEEEEEeCCcEEEEECCCCCc--ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCC
Confidence 578899999999999999986543 567888889999999999999999999999999999999999999999989999
Q ss_pred CccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEE
Q psy5806 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL 591 (1332)
Q Consensus 512 p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l 591 (1332)
|.||||||++++|||+|...++|++++++|+.+++|+...+..|++|||||.+|+|||||||..++|+|+.|||+.++++
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 99999999999999999999999999999999999998899999999999999999999999889999999999999998
Q ss_pred EeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEe-ecc---eEE-------------------------
Q psy5806 592 ASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA-LHH---LKV------------------------- 642 (1332)
Q Consensus 592 ~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~-~~~---l~v------------------------- 642 (1332)
+. .+.+|+||+||+.+++|||+|+..+.|++++++|+.++++.. ++| |++
T Consensus 162 ~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 162 VP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCc
Confidence 85 789999999999999999999999999999999999977665 555 655
Q ss_pred ----EeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeecccee
Q psy5806 643 ----MTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKI 718 (1332)
Q Consensus 643 ----~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i 718 (1332)
...+..|++|++||+.+|+..|||..+||+|+|||++.|.++|+|+||.||.|.+|+++|.+ +++||+|+++..|
T Consensus 241 ~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~-~~~~Ll~s~~~~i 319 (628)
T 4a0p_A 241 RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA-PTTFLLFSQKSAI 319 (628)
T ss_dssp CEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC-CSSEEEEEETTEE
T ss_pred eEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc-ccceeeeeccceE
Confidence 11234689999999999999999999999999999999955999999999999999999996 6899999999999
Q ss_pred EEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeC------CCCCccceeEecC
Q psy5806 719 RQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN------DLNRTESIAVDAI 792 (1332)
Q Consensus 719 ~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~------~~~~p~glAvD~~ 792 (1332)
+++.++.....+.++|+++++++.+||||+.+++|||+|...+.|+|+.++|+..++++.. ++..|+|||+||+
T Consensus 320 ~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~ 399 (628)
T 4a0p_A 320 NRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIY 399 (628)
T ss_dssp EEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETT
T ss_pred EEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeecc
Confidence 9999987655567888899999999999999999999999999999999999998887765 5779999999999
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCC-ceEEEecCCCCcEEEecc-
Q psy5806 793 GRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNN-RIEMAHMDGTNRAVFETE- 870 (1332)
Q Consensus 793 ~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~-~I~r~~~dG~~~~~l~~~- 870 (1332)
++||||+|...++|++++++|+.+++++..++..|++|||||.+|+||||||+.+ + +|+|+.|||+++++|++.
T Consensus 400 ~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~----~~~I~r~~~dG~~~~~l~~~~ 475 (628)
T 4a0p_A 400 SRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQER----SPKIERAALDGTEREVLFFSG 475 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETT----EEEEEEEETTSCSCEEEECSS
T ss_pred CCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCC----CCeEEEEeCCCCCcEEEEecc
Confidence 9999999999999999999999999998888999999999999999999999876 4 899999999999999987
Q ss_pred cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC---e
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---K 946 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g---~ 946 (1332)
+.+|+||++|+.+ ++|||+|++.++|++++++|+.++++.. .+.||+||++++++|||+||.+++|++++|.+| +
T Consensus 476 l~~P~gla~D~~~-~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 476 LSKPIALALDSRL-GKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp CSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCE
T ss_pred CCCccEEEEeCCC-CEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcE
Confidence 9999999999998 9999999999999999999999999984 789999999999999999999999999999988 6
Q ss_pred EEEeeee--cCcceEEeccc--cCCCCCcccCCCCCCccccccCCCC-ccccCCCCeeEccCCccccc
Q psy5806 947 DIVEFAQ--VDRPWLVRAAQ--NISFPNACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 947 ~i~~~~~--~~i~~~~~~~~--~~~~~n~C~~~nGgCshlCl~~p~~-~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+|+.++. ++|. +++... +.+ .|||..+||||+|||++.|.+ ++|+||.||.|.+|+++|-.
T Consensus 555 ~i~~~~~~~~~i~-~~~~~~~~~~~-~n~c~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~~~~ 620 (628)
T 4a0p_A 555 KVQARIAQLSDIH-AVKELNLQEYR-QHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620 (628)
T ss_dssp EEECCCTTEEEEE-EECCCCHHHHH-HSTTTTGGGGCSSEEEECTTSCEEEECCTTEEECTTSSCEEE
T ss_pred EEeccCCCCcceE-EEeecccCccc-cccCCCCCCCcchhcccCCCCCeeeeCCCCCEECCCCCcCCC
Confidence 6776654 6777 666432 234 899999999999999998875 89999999999999999974
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-95 Score=919.29 Aligned_cols=567 Identities=38% Similarity=0.730 Sum_probs=513.5
Q ss_pred cceeEeeecccccccccCCCCCceeeEEeeeeccceEEEEEEccCCeEEEEcCCCceEEEEEecCcc-eEEEEeCCCCCC
Q psy5806 434 EELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTF-QYNVIRHNTKKP 512 (1332)
Q Consensus 434 ~~~ll~~~~~~i~~~~l~~~~~~~~~~~p~~~~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~-~~~v~~~~~~~p 512 (1332)
.|+||++++++|+.++++.... +..+++.+++++.|||||+.+++|||+|...++|+|+.++|+. .++++..++..|
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~--~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P 86 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKE--NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 86 (619)
T ss_dssp -CCEEEECSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCE
T ss_pred CceEEEeccccEEEEeCCCCcc--eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCc
Confidence 4689999999999999976431 3466778899999999999999999999999999999999975 477888888999
Q ss_pred ccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEE
Q psy5806 513 AGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILA 592 (1332)
Q Consensus 513 ~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~ 592 (1332)
.||||||++++|||+|...++|++++++|+.+++|+...+..|++|||||.+|+||||||+..++|+|+.|||+.+++++
T Consensus 87 ~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 87 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 99999999999999999999999999999999999988999999999999999999999998899999999999999999
Q ss_pred eCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEe--ecc---eEE-------------------------
Q psy5806 593 SDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA--LHH---LKV------------------------- 642 (1332)
Q Consensus 593 ~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~--~~~---l~v------------------------- 642 (1332)
...+.+|+|||+|+.+++|||+|+..+.|+++++||+.++++.. ++| |++
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCC
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcc
Confidence 88999999999999999999999999999999999999988865 544 555
Q ss_pred ----EeeecCceeEEEEeCCCCcC-cCCCcCCCCCCccccccCCC-CCceeeCCCCccccCCCCccccCCccceEeeccc
Q psy5806 643 ----MTKVVGLTDIDIFHRRRSKK-THPCNENNGGCSHLCLIAPK-DGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTD 716 (1332)
Q Consensus 643 ----~~~~~~~~~i~v~~~~~q~~-~~pC~~~nggCs~lCl~~~~-~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~ 716 (1332)
......|++|++||+.+||. .|||..+||+|||||+++|. .+|+|+||.||+|.+|+++|...+++||+|+.+.
T Consensus 247 ~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~ 326 (619)
T 3s94_A 247 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326 (619)
T ss_dssp CEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESS
T ss_pred cEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEccc
Confidence 11134689999999999995 89999999999999999985 3799999999999999999998889999999999
Q ss_pred eeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeE
Q psy5806 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKI 796 (1332)
Q Consensus 717 ~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nL 796 (1332)
.|++++++.+....+++|++++.++.+||||+.+++|||+|...+.|+|+.++|+..++++..++..|.||||||+++||
T Consensus 327 ~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~l 406 (619)
T 3s94_A 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNL 406 (619)
T ss_dssp CEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcE
Confidence 99999999887777888999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCc
Q psy5806 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPS 875 (1332)
Q Consensus 797 YwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~ 875 (1332)
||+|...++|++++++|+.+++++..++..|++|||||.+|+||||||+.. ++|+|+.|||+++.++++. +.+|+
T Consensus 407 Y~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~----~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 407 YWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI----PKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS----CEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC----CEEEEEccCCCccEEEEeCCCCCCe
Confidence 999999999999999999999999888999999999999999999999986 8999999999999999887 99999
Q ss_pred eeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC--eEEEeee
Q psy5806 876 CLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV--KDIVEFA 952 (1332)
Q Consensus 876 gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g--~~i~~~~ 952 (1332)
||++|+.+ ++|||+|+..++|++++++|..++++.. .+.||+||++++++|||+||.+++|++++|.+| +++..++
T Consensus 483 GlalD~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g~~~~~~~~~ 561 (619)
T 3s94_A 483 GLALDYDE-GKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQL 561 (619)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSCCEEEEECSC
T ss_pred eeEEcccC-CEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCCceEEEecCC
Confidence 99999988 9999999999999999999999988864 789999999999999999999999999999999 6777777
Q ss_pred e--cCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 953 Q--VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 953 ~--~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+ ++|+ +++..++.+ .|+|+.+||||+|+|+++|++++|+||.||.|..|+++|.+
T Consensus 562 ~~~~~i~-~~~~~~~~~-~~~C~~~ng~C~~~C~~~~~~~~C~C~~g~~l~~d~~~C~~ 618 (619)
T 3s94_A 562 PDLMGLK-ATNVHRVIG-SNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIV 618 (619)
T ss_dssp CCEEEEE-EEESSCCCC-CCGGGSGGGGCSSEEEEETTEEEEECCTTCEECSSTTCEEC
T ss_pred CCCceee-ecccccccc-cccCCCCCCChhHhhccCCCCeEEECCCCCEECCCCCcCCC
Confidence 6 8999 888776666 99999999999999999999999999999999999999984
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-73 Score=724.84 Aligned_cols=333 Identities=32% Similarity=0.636 Sum_probs=295.0
Q ss_pred CCCCccccccCCCCCceeeCCCCccccCCCCccccC-CccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecC
Q psy5806 670 NGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN-PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDT 748 (1332)
Q Consensus 670 nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~-~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~ 748 (1332)
++.|+|+|+..++ +|+|.|+.||+|..++++|... +..+|+++.+..|+++.++..... .-+.++.++.+|+||.
T Consensus 358 ~~~C~~~C~n~~g-sy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~ 433 (791)
T 3m0c_C 358 PDTCSQLCVNLEG-GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEV 433 (791)
T ss_dssp SSSCTTTCCBCSS-CBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECTTSCCCE---EEECSCSSEEEEEEET
T ss_pred CCCCCCeeecCCC-CceeecCCCCEeCCCCceeeecccccccccccccceeEeeccCCcce---eeecCCCceEEEeecc
Confidence 3468899999887 9999999999999999999753 567999999999999999865432 2234788999999999
Q ss_pred CCceEEEEecCCCceEEEecCCC----CceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCC
Q psy5806 749 KNEYIYWSDISEKTIERVRFDMT----GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824 (1332)
Q Consensus 749 ~~~~lYwsD~~~~~I~r~~~~g~----~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~ 824 (1332)
.+++|||+|...+.|+++.++|. ..++++..++..|.||||||++++|||+|...++|++++++|+.+++++...+
T Consensus 434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l 513 (791)
T 3m0c_C 434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 513 (791)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC
Confidence 99999999999999999999984 45677777899999999999999999999999999999999999999998889
Q ss_pred CCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC
Q psy5806 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903 (1332)
Q Consensus 825 ~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d 903 (1332)
..|++|||||..|+|||+||+.. ++|+|+.|||+.+++++.. +.+|+||+||+.+ ++|||+|++..+|++++++
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~----~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTP----AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSS----CEEEEEETTSCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecCCCCEEEecCCCC----CeEEEEecCCCceEEEEeCCCCCceEEEEecCC-CeEEEEeCCCCcEEEEecC
Confidence 99999999999999999999986 7999999999999999887 9999999999988 9999999999999999999
Q ss_pred CCceeEEec---cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC---eEEEeeee--cCcceEEecc-ccCCCCCcccC
Q psy5806 904 TGRAKRAYA---VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---KDIVEFAQ--VDRPWLVRAA-QNISFPNACGS 974 (1332)
Q Consensus 904 G~~~~~l~~---~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g---~~i~~~~~--~~i~~~~~~~-~~~~~~n~C~~ 974 (1332)
|..++++.. .+.+|++|++++++|||+||.+++|++++|.+| ++|..++. ++|. +|++. ||.. .|||+.
T Consensus 589 G~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~-v~h~~~Qp~~-~N~C~~ 666 (791)
T 3m0c_C 589 GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV-LFHNLTQPRG-VNWCER 666 (791)
T ss_dssp SCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEE-EESGGGSCCC-CCTTTS
T ss_pred CCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEe-eeccccCCCC-CCcccc
Confidence 999998875 588999999999999999999999999999988 56666664 8998 88865 5666 999997
Q ss_pred ---CCCCCccccccCCC------CccccCCCCeeEccCCccccccCcc
Q psy5806 975 ---NNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRTRE 1013 (1332)
Q Consensus 975 ---~nGgCshlCl~~p~------~~~C~Cp~g~~l~~d~~tC~~~p~~ 1013 (1332)
+||||+||||+.|. +|+|+||.||.|..|+++|+..|++
T Consensus 667 ~~~~ng~CshlCl~~p~~~~~~~~~~C~Cp~g~~L~~d~~tC~~~~~~ 714 (791)
T 3m0c_C 667 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714 (791)
T ss_dssp SSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC----
T ss_pred cCCCCcCcCeeecCCCCcCCCCCCceeECCCCCEECCCCCcCCCCCCc
Confidence 89999999999875 5899999999999999999977665
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-70 Score=698.05 Aligned_cols=586 Identities=28% Similarity=0.565 Sum_probs=288.8
Q ss_pred ccccCCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCC
Q psy5806 10 VGYLQEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGE 88 (1332)
Q Consensus 10 ~~~~~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~Dgs 88 (1332)
|...+|.+.+|+|.+ .++|||..|+|||..||.|||||.+| ....|.+++|+|.+|+||+..|+|||..||.|||
T Consensus 60 C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C----~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgs 135 (791)
T 3m0c_C 60 CLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC----PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCCc----cCccccCCeEECCCCCEECHHHcCCCcccCCCCc
Confidence 667789999999983 28999999999999999999999999 4568999999999999999999999999999999
Q ss_pred Ccccccc-cCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCCCCCCCCCCCCcCCcCccccc
Q psy5806 89 DERNCNK-TCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLS 167 (1332)
Q Consensus 89 DE~~C~~-~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~dC~dg~de~d~~~C~~~~~~~ 167 (1332)
||.+|+. .|.+. +|+|.+ +.||+..|+|||..||.||+||.. ..|.......
T Consensus 136 DE~~C~~~~C~~~-~f~C~~-------------------------~~Ci~~~~~Cdg~~dC~dgsDE~~-~~C~~~~~~~ 188 (791)
T 3m0c_C 136 DEASCPVLTCGPA-SFQCNS-------------------------STCIPQLWACDNDPDCEDGSDEWP-QRCRGLYVFQ 188 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-eeccCC-------------------------CccccccccCCCCCcCCCCCCccc-ccCCCccccC
Confidence 9999976 49887 999977 359999999999999999999943 2564221100
Q ss_pred CcceeEEeecccceeEEeeeccceeEEEEEEEEEecccccCceeeecccCceeeecCCCCeEEEEcCCCCceEEEEeCCC
Q psy5806 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNI 247 (1332)
Q Consensus 168 ~~~~~~~~~~~~~~~a~d~~~~~~~iywsd~v~~~g~~~~~~lavDWi~~~lYw~d~~~~~I~v~~~dg~~~~~l~~~~~ 247 (1332)
... .......|.+.. |...+. .|+-+...- ..||+... +.
T Consensus 189 ~~~--------~~C~~~~f~C~~------------g~Ci~~----~~~CDg~~d-----------C~dgsDE~-----~C 228 (791)
T 3m0c_C 189 GDS--------SPCSAFEFHCLS------------GECIHS----SWRCDGGPD-----------CKDKSDEE-----NC 228 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC--------CCCCCCcccccC------------Cceecc----ccccCCCCC-----------CCCCCCCC-----Cc
Confidence 000 000111121111 111111 122211100 11221100 00
Q ss_pred CCCceEEEcCCCCeEEEEecCCCCcee--------EecCCCCCcEEEecCCcc-CceeeeeecCCCeEEEEeCCCCeEEE
Q psy5806 248 DKPRAVIVHPRDAFVFWTDWGKTPKIE--------RVEMDGSNRKVILTENIF-WPNGLTIDFEEDRLYWTEAKHHFIES 318 (1332)
Q Consensus 248 ~~pr~iavdp~~g~~fwtd~g~~~~Ie--------ra~mdGs~~~~l~~~~~~-~p~gl~iD~~~~rlYw~D~~~~~i~~ 318 (1332)
.. ....|. .|=- .+..-|. ....||++.........- .|+.+. +
T Consensus 229 ~~---~~C~~~---~f~C--~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~----------C--------- 281 (791)
T 3m0c_C 229 AV---ATCRPD---EFQC--SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFK----------C--------- 281 (791)
T ss_dssp ----------------------------------------------------CCSTTCCC----------C---------
T ss_pred cc---cccCCC---ccee--cCCceEecceecCChhccccccccCcccccccccCCCccc----------c---------
Confidence 00 000000 0000 0000111 012344433221110000 000000 0
Q ss_pred EeCCCCcEEEEEcCCCCCceeEEEecCeeEeecCCCcc--eEEeeccc-CcceEEEecc--C--CCceeEEEecCCCCcc
Q psy5806 319 SDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKS--ISSANKYT-GRNIKTVHSG--L--HFPMNIRSYHPHRQPN 391 (1332)
Q Consensus 319 ~~~dG~~~~~v~~~~~~~p~~l~~~~~~~ywtd~~~~~--i~~~~k~~-g~~~~~i~~~--~--~~p~~i~~~h~~~qp~ 391 (1332)
.+|. .+ .......-..+---++|..... +..+.... +-....+... + ..|.|.+. ...+.+.
T Consensus 282 --~~G~----Ci----~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~ 350 (791)
T 3m0c_C 282 --HSGE----CI----TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCE 350 (791)
T ss_dssp --TTSC----CC----CSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEE
T ss_pred --CCCc----cc----ccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccc
Confidence 0010 00 0000000000111112211100 00000000 0000111110 0 12333333 2345567
Q ss_pred ccccCC-CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC-ccceeEeeecccccccccCCCCCceeeEEeeeeccce
Q psy5806 392 YQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES-PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSV 469 (1332)
Q Consensus 392 ~~n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~-~~~~ll~~~~~~i~~~~l~~~~~~~~~~~p~~~~~~~ 469 (1332)
+.|+|. ++.|+|+|++.+++|+|.|+.||+|.+++++|++. ..++|+|+++..|+.+.++...+ ...+.+++++
T Consensus 351 dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~----~~l~~~~~~~ 426 (791)
T 3m0c_C 351 DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY----TSLIPNLRNV 426 (791)
T ss_dssp CCCCCSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECTTSCCC----EEEECSCSSE
T ss_pred cCcccCCCCCCCCeeecCCCCceeecCCCCEeCCCCceeeecccccccccccccceeEeeccCCcc----eeeecCCCce
Confidence 899998 78999999999999999999999999999999864 45699999999999999976544 3334568899
Q ss_pred EEEEEEccCCeEEEEcCCCceEEEEEecCc----ceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcE
Q psy5806 470 VAIAWESANDSLYWADVENGEINRAHINGT----FQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPT 545 (1332)
Q Consensus 470 ~~i~~d~~~~~lywsD~~~~~I~r~~~~g~----~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~ 545 (1332)
.||+||..+++|||+|...++|+|+.++|. ..++++..++..|.||||||++++|||+|...++|+|++++|+.++
T Consensus 427 ~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~ 506 (791)
T 3m0c_C 427 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 506 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred EEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEE
Confidence 999999999999999999999999999984 5577888889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEe
Q psy5806 546 LLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625 (1332)
Q Consensus 546 ~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~ 625 (1332)
+|+...+..|++|||||..|+|||||||..++|+++.|||+.+++++...+.+|+|||||+.+++|||+|++.+.|++++
T Consensus 507 ~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 99988999999999999999999999998799999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEe----ecc---eEE-----------------------------EeeecCceeEEEEeCCCCcC-cCCCcC
Q psy5806 626 LDGTRKQTLIA----LHH---LKV-----------------------------MTKVVGLTDIDIFHRRRSKK-THPCNE 668 (1332)
Q Consensus 626 ~dG~~~~~~~~----~~~---l~v-----------------------------~~~~~~~~~i~v~~~~~q~~-~~pC~~ 668 (1332)
++|+.+++++. ++| |++ ...+..|++|+|||+.+||. .|||..
T Consensus 587 ~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~~~N~C~~ 666 (791)
T 3m0c_C 587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCER 666 (791)
T ss_dssp TTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTTS
T ss_pred cCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCCCCCcccc
Confidence 99999999875 555 444 11234689999999999985 899987
Q ss_pred ---CCCCCccccccCCC-----CCceeeCCCCccccCCCCccccCCcc
Q psy5806 669 ---NNGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTCSENPSK 708 (1332)
Q Consensus 669 ---~nggCs~lCl~~~~-----~~~~C~Cp~g~~l~~d~~tC~~~~~~ 708 (1332)
+||+||||||++|. .+|+|+||.||.|.+|+++|.+.+++
T Consensus 667 ~~~~ng~CshlCl~~p~~~~~~~~~~C~Cp~g~~L~~d~~tC~~~~~~ 714 (791)
T 3m0c_C 667 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEA 714 (791)
T ss_dssp SSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC----
T ss_pred cCCCCcCcCeeecCCCCcCCCCCCceeECCCCCEECCCCCcCCCCCCc
Confidence 89999999999874 27999999999999999999976554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-68 Score=680.76 Aligned_cols=331 Identities=32% Similarity=0.650 Sum_probs=287.6
Q ss_pred CCCccccccCCCCCceeeCCCCccccCCCCccccC-CccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCC
Q psy5806 671 GGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN-PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTK 749 (1332)
Q Consensus 671 ggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~-~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~ 749 (1332)
+.|+|+|...++ +|+|.|+.||++..++++|... +..+|+++.+..|+++.++.... ..-+..+.++.+|+||+.
T Consensus 341 ~~C~~~C~n~~g-~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~~~~---~~~~~~~~~p~gla~d~~ 416 (699)
T 1n7d_A 341 DTCSQLCVNLEG-GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY---TSLIPNLRNVVALDTEVA 416 (699)
T ss_dssp SSCTTTCCBCSS-CBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTSCCE---ECCSCCCTTCCCCEEETT
T ss_pred CccccccccCCC-CeeeeeecccccCCCCCcccccccceeEEecCccceEEEeCCCCcc---eeeeccCcceEEEccccc
Confidence 458899999887 9999999999999999999843 57899999999999999986432 222346788999999999
Q ss_pred CceEEEEecCCCceEEEecCC----CCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCC
Q psy5806 750 NEYIYWSDISEKTIERVRFDM----TGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825 (1332)
Q Consensus 750 ~~~lYwsD~~~~~I~r~~~~g----~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~ 825 (1332)
+++|||+|...+.|+++.++| +..+.++..++..|.||||||.+++|||+|...++|.+++++|+.+++++...+.
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~ 496 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS 496 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC
Confidence 999999999999999999987 5556666667889999999999999999999999999999999999988877788
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCC
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT 904 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG 904 (1332)
.|++|||||..|+|||++++.. ++|+|+.|||+.+++++.. +.+|+||+||+.+ ++|||+|+..++|++++++|
T Consensus 497 ~P~giavDp~~g~ly~td~~~~----~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTP----AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSS----CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT-CCEEEEETTTTEEEEECSSS
T ss_pred CcceEEEccCCCcEEEcccCCC----CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC-CEEEEEecCCCeEEEEccCC
Confidence 9999999999999999999875 7999999999999888866 9999999999998 89999999999999999999
Q ss_pred CceeEEec---cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEE---Eeee--ecCcceEEecc-ccCCCCCcccCC
Q psy5806 905 GRAKRAYA---VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDI---VEFA--QVDRPWLVRAA-QNISFPNACGSN 975 (1332)
Q Consensus 905 ~~~~~l~~---~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i---~~~~--~~~i~~~~~~~-~~~~~~n~C~~~ 975 (1332)
..++++.. .+.+|++|++++++|||+||.+++|.++++.+|+.+ ..++ |++|. ++++. ||.. .|||+.+
T Consensus 572 ~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~-v~~~~~qp~~-~n~C~~~ 649 (699)
T 1n7d_A 572 GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV-LFHQLTQPRG-VNWCERT 649 (699)
T ss_dssp SCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC-BCSSSSSCCS-CCSSCSS
T ss_pred CceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE-EeCcccCCCC-CCCcccc
Confidence 99988875 578999999999999999999999999999988433 3333 38888 77764 5666 8999997
Q ss_pred ---CCCCccccccCCC------CccccCCCCeeEccCCccccccCc
Q psy5806 976 ---NGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRTR 1012 (1332)
Q Consensus 976 ---nGgCshlCl~~p~------~~~C~Cp~g~~l~~d~~tC~~~p~ 1012 (1332)
||||+||||++|. +|+|+||.||.|..|+++|++.|+
T Consensus 650 ~~~ng~Cs~lCl~~p~~~~~~~~~~C~Cp~g~~l~~d~~~C~~~~~ 695 (699)
T 1n7d_A 650 TLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 695 (699)
T ss_dssp SCSSCSCTTCCBCCCCCTTCSCSCBCCCCSSCEECSSTTCEECC--
T ss_pred CCCCCCCCcccCcCcccCCCCCCcEEECcCCCEECCCCCccCCCCc
Confidence 9999999998762 599999999999999999997654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-65 Score=650.70 Aligned_cols=534 Identities=28% Similarity=0.583 Sum_probs=381.1
Q ss_pred ccccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCC
Q psy5806 10 VGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGED 89 (1332)
Q Consensus 10 ~~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsD 89 (1332)
|....|.+.+|+|. +++||+..|+|||..||.|||||.+| ....|.+.+|+|.+|.||+..|+|||..||.||||
T Consensus 83 C~~~~C~~~~f~C~-~g~Ci~~~~~Cdg~~dC~dgsDE~~C----~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsD 157 (699)
T 1n7d_A 83 CPPKTCSQDEFRCH-DGKCISRQFVCDSDRDCLDGSDEASC----PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 157 (699)
T ss_dssp CSSCCCCSSCCCSS-CC----CCCTTCSSCCSSSSCSSSSC----CCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSS
T ss_pred ccccccccCcEEcC-CCCEecHHHcCCCcCcCCCCCccCCc----CccccCccccCCCCCcccchhcccCCCCcCCCCcc
Confidence 55567999999998 89999999999999999999999999 45689999999999999999999999999999999
Q ss_pred c--ccccc---------cCCCCCccccCCCCCCCCcc----------cCCC--cc---CCCCceecCCCceecCCccccC
Q psy5806 90 E--RNCNK---------TCDAQKEFSCMKLAEPRPTE----------VGSN--IK---YFPLHTVRAPRKDCFSKKYLCD 143 (1332)
Q Consensus 90 E--~~C~~---------~C~~~~~~~C~~~~~~~~~~----------~~~~--~~---~~~~~~~~~~~~~Ci~~~~~Cd 143 (1332)
| .+|.. .|.+. +|.|.++ .|++.. .++. ++ .|+...+.+..+.||+..++||
T Consensus 158 E~~~~C~~~~~~~~~~~~C~~~-~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cd 235 (699)
T 1n7d_A 158 EWPQRCRGLYVFQGDSSPCSAF-EFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCD 235 (699)
T ss_dssp SSCSSSSCCCCCSSCCCCSCSS-SCCCSSS-CCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSSCEEETTCCSS
T ss_pred cccccCCCcccccCCCCCCCCc-ceecCCC-ceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCCceeeeecccC
Confidence 9 89963 48876 8999874 222211 0100 00 1222233333334555555555
Q ss_pred CCCCCCCCCCCCCCcCCcCcccc-cCcceeEEeecccceeEEeeeccceeEEEEEEEEEecccccCceeeecccCceeee
Q psy5806 144 GKKHCPRGEEGPDERHCPKRVSL-SNKKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWT 222 (1332)
Q Consensus 144 g~~dC~dg~de~d~~~C~~~~~~-~~~~~~~~~~~~~~~~a~d~~~~~~~iywsd~v~~~g~~~~~~lavDWi~~~lYw~ 222 (1332)
|..||.||+|| ..|...... ...+|.+ .. |.. |...++.
T Consensus 236 g~~dC~dgsde---~~C~~~~~C~~~~~~~C---------------~~------------g~C----i~~~~~C------ 275 (699)
T 1n7d_A 236 REYDCKDMSDE---VGCVNVTLCEGPNKFKC---------------HS------------GEC----ITLDKVC------ 275 (699)
T ss_dssp SCCCSSSSCSS---SSTTCCCCCCSTTCCCC---------------TT------------SCC----CCSSCCS------
T ss_pred CCCCCCCCCcc---CCCCCCCcccCCCceec---------------CC------------CcE----eCCcccc------
Confidence 55555555555 233210000 0000000 00 000 0000000
Q ss_pred cCCCCeEEEEcCCCCceEEEEeCCCCCCceEEEcCCCCeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeeecC
Q psy5806 223 DTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFE 302 (1332)
Q Consensus 223 d~~~~~I~v~~~dg~~~~~l~~~~~~~pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~~ 302 (1332)
|| .+...||++... . .. .+|
T Consensus 276 ------------d~-------------------------------------~~dC~dgsDe~~--~---~C----~~~-- 295 (699)
T 1n7d_A 276 ------------NM-------------------------------------ARDCRDWSDEPI--K---EC----GTN-- 295 (699)
T ss_dssp ------------CS-------------------------------------SCCSSSSCSCCC--S---SC----CCC--
T ss_pred ------------cc-------------------------------------cceecCcccccc--c---cc----ccc--
Confidence 00 001112221100 0 00 000
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEEcCCCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCceeEE
Q psy5806 303 EDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382 (1332)
Q Consensus 303 ~~rlYw~D~~~~~i~~~~~dG~~~~~v~~~~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~ 382 (1332)
|...-.|.-... .. + +...+. ...|.|.+
T Consensus 296 --------------eC~~~~~~C~~~----C~--------------------------~--~~~~~~-----C~C~~G~~ 324 (699)
T 1n7d_A 296 --------------ECLDNNGGCSHV----CN--------------------------D--LKIGYE-----CLCPDGFQ 324 (699)
T ss_dssp --------------CTTSSTTTSCTT----CC--------------------------C--CTTCCC-----CCCCSSSC
T ss_pred --------------cccccccCcCCC----cc--------------------------c--CCCCcE-----EeCCCCeE
Confidence 000000000000 00 0 000000 01122222
Q ss_pred EecCCCCccccccCC-CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC-ccceeEeeecccccccccCCCCCceeeE
Q psy5806 383 SYHPHRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES-PEELLIYARQKDLRISQLTEPSPTFETV 460 (1332)
Q Consensus 383 ~~h~~~qp~~~n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~-~~~~ll~~~~~~i~~~~l~~~~~~~~~~ 460 (1332)
. ...+.+...|+|. ++.|+|+|++.+++|+|.|+.||+|.+++++|++. ..++|||+++..|+.+.++.... .
T Consensus 325 ~-~~~~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~~~~----~ 399 (699)
T 1n7d_A 325 L-VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY----T 399 (699)
T ss_dssp C-CSSSCCCCCCCCSSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTSCCE----E
T ss_pred c-CCCCcccCccccCCCCccccccccCCCCeeeeeecccccCCCCCcccccccceeEEecCccceEEEeCCCCcc----e
Confidence 2 1234566789998 78999999999999999999999999999999865 45799999999999999876543 2
Q ss_pred EeeeeccceEEEEEEccCCeEEEEcCCCceEEEEEecC----cceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEE
Q psy5806 461 LPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING----TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536 (1332)
Q Consensus 461 ~p~~~~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g----~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v 536 (1332)
..+..+.++.+|+||+.+++|||+|...++|+++.++| +..++++..++..|.||||||.+++|||+|...++|.+
T Consensus 400 ~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 400 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp CCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred eeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence 23455778999999999999999999999999999997 55556666678899999999999999999999999999
Q ss_pred EeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeC
Q psy5806 537 SNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616 (1332)
Q Consensus 537 ~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~ 616 (1332)
++++|+.+++++..++..|++|||||..|+|||+||+..++|+++.|||+.+++++...+.+|+|||||+.+++|||+|+
T Consensus 480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 99999999998877899999999999999999999987789999999999999998888999999999999999999999
Q ss_pred CCCeEEEEecCCCceEEEEe----ecc---eEE-----------------E------------eeecCceeEEEEeCCCC
Q psy5806 617 GLKTIEFTNLDGTRKQTLIA----LHH---LKV-----------------M------------TKVVGLTDIDIFHRRRS 660 (1332)
Q Consensus 617 ~~~~I~~~~~dG~~~~~~~~----~~~---l~v-----------------~------------~~~~~~~~i~v~~~~~q 660 (1332)
..++|++++++|+.+++++. ++| |++ . ..+..|++|++||+.+|
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~q 639 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQ 639 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSS
T ss_pred CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccC
Confidence 99999999999999998864 344 555 0 01346899999999999
Q ss_pred cC-cCCCcCC---CCCCccccccCCC-----CCceeeCCCCccccCCCCccccCC
Q psy5806 661 KK-THPCNEN---NGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTCSENP 706 (1332)
Q Consensus 661 ~~-~~pC~~~---nggCs~lCl~~~~-----~~~~C~Cp~g~~l~~d~~tC~~~~ 706 (1332)
|. .|||..+ ||+||||||++|. .+|+|+||.||+|.+|+++|++.+
T Consensus 640 p~~~n~C~~~~~~ng~Cs~lCl~~p~~~~~~~~~~C~Cp~g~~l~~d~~~C~~~~ 694 (699)
T 1n7d_A 640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA 694 (699)
T ss_dssp CCSCCSSCSSSCSSCSCTTCCBCCCCCTTCSCSCBCCCCSSCEECSSTTCEECC-
T ss_pred CCCCCCccccCCCCCCCCcccCcCcccCCCCCCcEEECcCCCEECCCCCccCCCC
Confidence 85 8999987 9999999998762 379999999999999999999653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=516.63 Aligned_cols=338 Identities=31% Similarity=0.653 Sum_probs=298.5
Q ss_pred CcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc-CcceEEEEeecceEEEEeCCCCCCCCcccccCCccceE
Q psy5806 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR-TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSI 1048 (1332)
Q Consensus 970 n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~-p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~ 1048 (1332)
|+|+ +||+|+|+|.+++++|+|.|+.||.|..|+++|... +++||+|+.++. |++++++... ....++.+.+|.
T Consensus 2 ~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~-I~~i~~~g~~---~~~~~~~~~~~~ 76 (349)
T 3v64_C 2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID-IRQVLPHRSE---YTLLLNNLENAI 76 (349)
T ss_dssp --------CCSSEECCC---CCEECCTTEEECTTSSCEEESSSCCEEEEECBSC-EEEECTTSCC---EEEEECSCSCEE
T ss_pred cccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCcccccccCceeEeecccc-eEEEeCCCCe---eEEeecCCCceE
Confidence 6898 789999999999999999999999999999999865 789999999999 9999987543 234456788899
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-Ee
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LV 1127 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~ 1127 (1332)
+|+||+.+++|||+|...++|++++++ |+..+.++..++..|.|||+||.+++|||+|...++|.+++++|+.+++ +.
T Consensus 77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~ 155 (349)
T 3v64_C 77 ALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 155 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEEeccccEEEEEeccCCceEEEecC-CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe
Confidence 999999999999999999999999988 6667777777888999999999999999999999999999999998777 44
Q ss_pred cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1128 NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1128 ~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
.++..|++|||||..|+|||||++. .++|+|+++||+.+++++..++.+|+||++|+++++|||+|+..++|+++
T Consensus 156 ~~l~~P~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 156 QSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp TTCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 6788999999999999999999875 58999999999999998888899999999999999999999999999999
Q ss_pred ecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCCC
Q psy5806 1208 DFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ 1285 (1332)
Q Consensus 1208 d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q 1285 (1332)
+++|+.+++++. +.+|+||++ ++++||||||.+++|.+++|.+| +..+++..++..|++|+++++.+|
T Consensus 231 ~~dG~~~~~~~~~~~~~P~giav-------~~~~ly~td~~~~~V~~~~~~~G---~~~~~i~~~~~~p~gi~v~~~~~q 300 (349)
T 3v64_C 231 NLDGSHRKAVISQGLPHPFAITV-------FEDSLYWTDWHTKSINSANKFTG---KNQEIIRNKLHFPMDIHTLHPQRQ 300 (349)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEE-------ETTEEEEEETTTTEEEEEETTTC---CSCEEEECSCSCCCCEEEECGGGS
T ss_pred eCCCCceEEEEeCCCCCceEEEE-------ECCEEEEecCCCCeEEEEEccCC---CccEEeccCCCCCceEEEEccccC
Confidence 999999888876 889999999 99999999999999999999999 778888889999999999999988
Q ss_pred -CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCC--CCcccccccc
Q psy5806 1286 -LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE--PNEECFEGIQ 1330 (1332)
Q Consensus 1286 -~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~--~~~~c~~~~~ 1330 (1332)
.+.|||+.+||||+||||+. +.+++|+||+|+. ++-+|.+.++
T Consensus 301 p~~~n~C~~~~g~C~~lCl~~--~~~~~C~C~~g~~~~d~~~C~~~~~ 346 (349)
T 3v64_C 301 PAGKNRCGDNNGGCTHLCLPS--GQNYTCACPTGFRKINSHACALEVL 346 (349)
T ss_dssp CCCCCTTTTGGGGCSSEEECC--TTSCEEECCTTEEEETTTEEEEGGG
T ss_pred ccccCcccCCCCCcccEeecC--CCCCeeECCCCCcCCCCCcccchhc
Confidence 68999999999999999998 4689999999994 3348988764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=503.63 Aligned_cols=333 Identities=35% Similarity=0.698 Sum_probs=296.0
Q ss_pred CCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc-CCccceEeeccceeEEEecCCCCCcceeeeccccccee
Q psy5806 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE-NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA 742 (1332)
Q Consensus 664 ~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~-~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~ 742 (1332)
+.|+ +||+|||+|+..++ +|+|.|+.||.|.+|+++|.. .++++|+|+.+..|++++++... ....++++.++.
T Consensus 2 ~ec~-~~~~C~~~C~n~~g-~~~C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~---~~~~~~~~~~~~ 76 (349)
T 3v64_C 2 NECA-EEGYCSQGCTNSEG-AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE---YTLLLNNLENAI 76 (349)
T ss_dssp --------CCSSEECCC----CCEECCTTEEECTTSSCEEESSSCCEEEEECBSCEEEECTTSCC---EEEEECSCSCEE
T ss_pred cccC-CCCCCcCeeecCCC-CeEEECCCCccCCCCCCcccccccCceeEeecccceEEEeCCCCe---eEEeecCCCceE
Confidence 5788 78999999999987 999999999999999999974 36889999999999999998643 234456788899
Q ss_pred EEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEec
Q psy5806 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWL 822 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~ 822 (1332)
+++||+.+++|||+|...+.|+|+.++|+..++++..++..|.|||+||.+++|||+|...++|++++++|+.+++++..
T Consensus 77 ~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~ 156 (349)
T 3v64_C 77 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ 156 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT
T ss_pred EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC
Confidence 99999999999999999999999999999988888888999999999999999999999999999999999999998888
Q ss_pred CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEc
Q psy5806 823 NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKT 901 (1332)
Q Consensus 823 ~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~ 901 (1332)
.+..|++|||||..|+|||+|++.. ++|+|+.|||+.+++++.. +.+|+||++|+.+ ++|||+|...++|++++
T Consensus 157 ~l~~P~~iavdp~~g~ly~td~~~~----~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~-~~lY~aD~~~~~I~~~~ 231 (349)
T 3v64_C 157 SLEKPRAIALHPMEGTIYWTDWGNT----PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERAN 231 (349)
T ss_dssp TCSCEEEEEEETTTTEEEEEECSSS----CEEEEEETTSCSCEESCCSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred CCCCcceEEEecCcCeEEEeccCCC----CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC-CEEEEEECCCCEEEEEe
Confidence 8899999999999999999999875 6999999999999998876 9999999999988 89999999999999999
Q ss_pred cCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC---eEEEeeee--cCcceEEecc-ccCCCCCcccC
Q psy5806 902 LATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---KDIVEFAQ--VDRPWLVRAA-QNISFPNACGS 974 (1332)
Q Consensus 902 ~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g---~~i~~~~~--~~i~~~~~~~-~~~~~~n~C~~ 974 (1332)
++|..++++.. .+.+|+||++++++|||+||.+++|.+++|.+| +++...+. ++|. ++++. ||.+ .|||+.
T Consensus 232 ~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~-v~~~~~qp~~-~n~C~~ 309 (349)
T 3v64_C 232 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH-TLHPQRQPAG-KNRCGD 309 (349)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE-EECGGGSCCC-CCTTTT
T ss_pred CCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEE-EEccccCccc-cCcccC
Confidence 99999887765 789999999999999999999999999999888 56665554 8898 88865 5666 999999
Q ss_pred CCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 975 NNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 975 ~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+||||+|||++.|.+++|+||+||. ..|+++|.+
T Consensus 310 ~~g~C~~lCl~~~~~~~C~C~~g~~-~~d~~~C~~ 343 (349)
T 3v64_C 310 NNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAL 343 (349)
T ss_dssp GGGGCSSEEECCTTSCEEECCTTEE-EETTTEEEE
T ss_pred CCCCcccEeecCCCCCeeECCCCCc-CCCCCcccc
Confidence 9999999999999999999999999 889999984
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-52 Score=494.84 Aligned_cols=336 Identities=31% Similarity=0.660 Sum_probs=293.3
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc-CcceEEEEeecceEEEEeCCCCCCCCcccccCCccce
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR-TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSS 1047 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~-p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~ 1047 (1332)
.++|. .++.|+|.|.+++++|+|.|+.||.|..|+++|+.. +++||+|+.++. |++++++.... ...++.+..|
T Consensus 44 ~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~-I~~i~~~~~~~---~~~~~~~~~~ 118 (386)
T 3v65_B 44 VNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRID-IRQVLPHRSEY---TLLLNNLENA 118 (386)
T ss_dssp ---------CCTTEEC-----CCEECCTTEEECTTSSCEEECSSCCEEEEECBSC-EEEECTTSCCC---EEEECSCSCE
T ss_pred cceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccccceeEeecCcc-ceeeccCCCcE---EEEecCCCcc
Confidence 68897 568999999999999999999999999999999875 688999999999 99999875433 3345677889
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-E
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-L 1126 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~ 1126 (1332)
.+|+||+.+++|||+|...++|++++++ |+..+.++..++..|.||||||.+++|||+|...++|.+++++|+.+++ +
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~ 197 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 197 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee
Confidence 9999999999999999999999999987 6667777777888999999999999999999999999999999988777 5
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
..++..|++|||||..|+|||||++. .++|+|++++|+.+++++..++.+|+||+||+++++|||+|+.+++|++
T Consensus 198 ~~~l~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~ 272 (386)
T 3v65_B 198 WQSLEKPRAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 272 (386)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred cCCCCCCcEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence 56788999999999999999999875 5899999999999999998889999999999999999999999999999
Q ss_pred EecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCC
Q psy5806 1207 CDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASK 1284 (1332)
Q Consensus 1207 ~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 1284 (1332)
++++|..+++++. +.+|+||++ ++++||||||.+++|.+++|.+| ...+++..++..|++|+++++.+
T Consensus 273 ~d~dG~~~~~~~~~~~~~P~giav-------~~~~ly~td~~~~~V~~~~~~~G---~~~~~i~~~~~~p~gi~v~~~~~ 342 (386)
T 3v65_B 273 ANLDGSHRKAVISQGLPHPFAITV-------FEDSLYWTDWHTKSINSANKFTG---KNQEIIRNKLHFPMDIHTLHPQR 342 (386)
T ss_dssp ECTTSCSCEEEECSSCSSEEEEEE-------ETTEEEEEETTTTEEEEEETTTC---CSCEEEECSCSCCCCEEEESGGG
T ss_pred EeCCCCeeEEEEECCCCCceEEEE-------ECCEEEEeeCCCCeEEEEECCCC---cceEEEccCCCCCceEEEEchhc
Confidence 9999999888876 889999999 99999999999999999999999 77888888999999999999998
Q ss_pred C-CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCC--CCccccc
Q psy5806 1285 Q-LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE--PNEECFE 1327 (1332)
Q Consensus 1285 q-~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~--~~~~c~~ 1327 (1332)
| .+.|||..+||||+||||+. +.+++|+||+|++ ++-+|.|
T Consensus 343 q~~~~n~C~~~ng~C~~lCl~~--~~~~~C~C~~g~~~~d~~~C~~ 386 (386)
T 3v65_B 343 QPAGKNRCGDNNGGCTHLCLPS--GQNYTCACPTGFRKINSHACAQ 386 (386)
T ss_dssp SCCCCCTTTTSCTTSSSEEECC--SSSCEEECCTTCBCSSSSCCBC
T ss_pred CcCCcCccccCCCCCCceeeeC--CCCCeeECCCCCcCCCCCccCC
Confidence 8 68999999999999999998 4689999999995 2236764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=493.73 Aligned_cols=338 Identities=27% Similarity=0.561 Sum_probs=300.5
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc-CcceEEEEeecceEEEEeCCCCCCCCcccccCCccce
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR-TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSS 1047 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~-p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~ 1047 (1332)
.++|. .++.|+|.|.+++++|.|.|+.||.+..++++|... +.+||+|+.++. |++++++..... ..++.+.++
T Consensus 40 ideC~-~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~-I~~i~l~~~~~~---~~~~~~~~~ 114 (400)
T 3p5b_L 40 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE-VRKMTLDRSEYT---SLIPNLRNV 114 (400)
T ss_dssp CCCCS-TTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTE-EEEECTTSCSCE---EEECSCSCE
T ss_pred chhhh-ccCCCCCccCCCccceeeeccccccccccccceeeccccceeEEeccce-eEEEccCCccee---EeccccCcc
Confidence 68887 357899999999999999999999999999999875 788999999999 999999865432 335678899
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCC----CCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDS----TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g----~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+||||+.+++|||+|...++|++++++ + +..++++..++..|.||||||++++|||+|...++|++++++|..+
T Consensus 115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~-g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~ 193 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLSQRMICSTQLD-RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 193 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE
T ss_pred eEEeeeeccCceEEEecCCCeEEEEEcc-cCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce
Confidence 9999999999999999999999999987 4 3456666668889999999999999999999999999999999988
Q ss_pred EE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 KI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
++ +..++..|++|||||..|+||||||+. .++|+|+++||+.+++++..++.+|+|||||+.+++|||+|+..+
T Consensus 194 ~~l~~~~~~~P~~iavdp~~g~ly~td~~~-----~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 194 KTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp EEEEECSSCCEEEEEEETTTTEEEEEECSS-----SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeCCCCCcceEEEecccCeEEEEeCCC-----CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 77 556888999999999999999999985 479999999999999999888999999999999999999999999
Q ss_pred eEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEE
Q psy5806 1203 RIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIK 1278 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 1278 (1332)
+|+++|++|..+++++. +.+|+||++ ++++||||||.+++|.+++|.+| +.++++..++..|++|+
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-------~~~~lywtd~~~~~V~~~~~~~G---~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIFSANRLTG---SDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEE-------ETTEEEEEESSSCSEEEEESSSC---CCCEEEECSCSCEEEEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEE-------eCCEEEEecCCCCeEEEEEcCCC---CceEEEecCCCCCceEE
Confidence 99999999999888876 689999999 99999999999999999999999 78888889999999999
Q ss_pred EEeCCCC-CCCCCCC---CCCCCCCccceeccC----CCCceeeCCCCC---CCCccccc
Q psy5806 1279 AISASKQ-LTWNPCA---QDNGGCSHLCFYKGR----TKGYVCGCPDDL---EPNEECFE 1327 (1332)
Q Consensus 1279 ~~~~~~q-~~~n~C~---~~ng~C~~lC~~~~~----~~~~~C~C~~~~---~~~~~c~~ 1327 (1332)
++++.+| .+.|||+ .+||+|+|||++.+. ..+++|+||+|| .++.+|..
T Consensus 339 v~~~~~qp~~~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~C~~g~~l~~d~~~C~~ 398 (400)
T 3p5b_L 339 LFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398 (400)
T ss_dssp EESGGGSCCCCCSSSSSSSGGGGCSSEEEECCCSSTTCCSEEEECCTTCEECTTSSSEES
T ss_pred EEeeccCCCCCCccccccCCCcCcCCeecCCCcccCCCCCeeEECCCCCEECCCCCccCC
Confidence 9999988 5889996 579999999998731 116899999999 34447864
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=485.55 Aligned_cols=335 Identities=32% Similarity=0.645 Sum_probs=299.5
Q ss_pred cCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccC-CccceEeeccceeEEEecCCCCCcceeeecccccce
Q psy5806 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN-PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMV 741 (1332)
Q Consensus 663 ~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~-~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~ 741 (1332)
.+.|.. .+.|++.|...++ +|+|.|+.||.+..++++|... +.+||+++.+..|++++++..... ..++.+.++
T Consensus 40 ideC~~-~~~C~~~C~n~~g-~~~C~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~I~~i~l~~~~~~---~~~~~~~~~ 114 (400)
T 3p5b_L 40 IDECQD-PDTCSQLCVNLEG-GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT---SLIPNLRNV 114 (400)
T ss_dssp CCCCST-TSSCSSCCBCCSS-SCBCCCCTTCCCCTTTSSCCCSTTSCEEEEEETTEEEEECTTSCSCE---EEECSCSCE
T ss_pred chhhhc-cCCCCCccCCCcc-ceeeeccccccccccccceeeccccceeEEeccceeEEEccCCccee---EeccccCcc
Confidence 467873 4689999999887 9999999999999999999753 678999999999999999875432 224578899
Q ss_pred eEEeecCCCceEEEEecCCCceEEEecCC----CCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceE
Q psy5806 742 ASVDVDTKNEYIYWSDISEKTIERVRFDM----TGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAK 817 (1332)
Q Consensus 742 ~~id~d~~~~~lYwsD~~~~~I~r~~~~g----~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~ 817 (1332)
.+||||+.+++|||+|...+.|+++.++| +..++++..++..|.||||||++++|||+|...++|++++++|+.++
T Consensus 115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~ 194 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence 99999999999999999999999999998 45677888789999999999999999999999999999999999999
Q ss_pred EEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCe
Q psy5806 818 VLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHT 896 (1332)
Q Consensus 818 ~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~ 896 (1332)
+++...+..|++|||||..|+|||+||+.. ++|+|+.|||+.+++++.. +.+|+||++|+.+ ++|||+|+..++
T Consensus 195 ~l~~~~~~~P~~iavdp~~g~ly~td~~~~----~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~ 269 (400)
T 3p5b_L 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHS 269 (400)
T ss_dssp EEEECSSCCEEEEEEETTTTEEEEEECSSS----CCEEEEETTSCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTE
T ss_pred EEEeCCCCCcceEEEecccCeEEEEeCCCC----CEEEEEeCCCCccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCE
Confidence 999888999999999999999999999876 7999999999999999877 9999999999998 999999999999
Q ss_pred EEEEccCCCceeEEec---cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC---eEEEeee--ecCcceEEecc-ccCC
Q psy5806 897 IEYKTLATGRAKRAYA---VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---KDIVEFA--QVDRPWLVRAA-QNIS 967 (1332)
Q Consensus 897 I~~~~~dG~~~~~l~~---~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g---~~i~~~~--~~~i~~~~~~~-~~~~ 967 (1332)
|++++++|..++++.. .+.||+||++++++|||+||.+++|++++|.+| ++|..++ |++|+ ++++. ||..
T Consensus 270 I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~-v~~~~~qp~~ 348 (400)
T 3p5b_L 270 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV-LFHNLTQPRG 348 (400)
T ss_dssp EEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE-EESGGGSCCC
T ss_pred EEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE-EEeeccCCCC
Confidence 9999999999988875 489999999999999999999999999999988 5666555 38898 88865 6656
Q ss_pred CCCccc---CCCCCCccccccCCC------CccccCCCCeeEccCCccccc
Q psy5806 968 FPNACG---SNNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 968 ~~n~C~---~~nGgCshlCl~~p~------~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.|||+ .+||||+|||++.|. +++|+||.||.|..|+++|++
T Consensus 349 -~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~C~~g~~l~~d~~~C~~ 398 (400)
T 3p5b_L 349 -VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398 (400)
T ss_dssp -CCSSSSSSSGGGGCSSEEEECCCSSTTCCSEEEECCTTCEECTTSSSEES
T ss_pred -CCccccccCCCcCcCCeecCCCcccCCCCCeeEECCCCCEECCCCCccCC
Confidence 89996 479999999999875 589999999999999999984
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=482.35 Aligned_cols=334 Identities=35% Similarity=0.697 Sum_probs=293.1
Q ss_pred cCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc-CCccceEeeccceeEEEecCCCCCcceeeecccccce
Q psy5806 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE-NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMV 741 (1332)
Q Consensus 663 ~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~-~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~ 741 (1332)
.++|. .++.|+|.|+..++ +|+|.|+.||.|.+|+++|.. .++.+|+++.+..|++++++.... ...++.+..+
T Consensus 44 ~~eC~-~~~~C~~~C~~~~g-~~~C~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~---~~~~~~~~~~ 118 (386)
T 3v65_B 44 VNECA-EEGYCSQGCTNSEG-AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEY---TLLLNNLENA 118 (386)
T ss_dssp ---------CCTTEEC------CCEECCTTEEECTTSSCEEECSSCCEEEEECBSCEEEECTTSCCC---EEEECSCSCE
T ss_pred cceeC-CcCcccCcCCCCCC-CCeEEECCCceEcCCCCeECCccccceeEeecCccceeeccCCCcE---EEEecCCCcc
Confidence 46787 46789999999887 999999999999999999985 357899999999999999986432 2334578899
Q ss_pred eEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEe
Q psy5806 742 ASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFW 821 (1332)
Q Consensus 742 ~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~ 821 (1332)
.+++||+.+++|||+|...+.|+|+.++|+..++++..++..|.|||+||.+++|||+|...++|++++++|+.+++++.
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~ 198 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 198 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec
Confidence 99999999999999999999999999999988888888899999999999999999999999999999999999999988
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEE
Q psy5806 822 LNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYK 900 (1332)
Q Consensus 822 ~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~ 900 (1332)
.++..|++|||||..|+|||+|++.. ++|+|+.|||+.+++++.. +.+|+||++|+.+ ++|||+|...++|+++
T Consensus 199 ~~l~~P~giavdp~~g~ly~td~~~~----~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 199 QSLEKPRAIALHPMEGTIYWTDWGNT----PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERA 273 (386)
T ss_dssp SSCSCEEEEEEETTTTEEEEEECSSS----CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEE
T ss_pred CCCCCCcEEEEEcCCCeEEEeccCCC----CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEE
Confidence 88899999999999999999999875 6999999999999998876 9999999999888 8999999999999999
Q ss_pred ccCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC---eEEEeeee--cCcceEEecc-ccCCCCCccc
Q psy5806 901 TLATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV---KDIVEFAQ--VDRPWLVRAA-QNISFPNACG 973 (1332)
Q Consensus 901 ~~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g---~~i~~~~~--~~i~~~~~~~-~~~~~~n~C~ 973 (1332)
+++|..++++.. .+.+|+||+++++.|||+||.+++|.+++|.+| ++|...+. ++|. ++++. ||.+ .|||+
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~-v~~~~~q~~~-~n~C~ 351 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH-TLHPQRQPAG-KNRCG 351 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE-EESGGGSCCC-CCTTT
T ss_pred eCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE-EEchhcCcCC-cCccc
Confidence 999999887765 789999999999999999999999999999888 56665544 8888 88765 5566 99999
Q ss_pred CCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 974 ~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.+||||+||||+.|.+++|+||+||. ..|+++|++
T Consensus 352 ~~ng~C~~lCl~~~~~~~C~C~~g~~-~~d~~~C~~ 386 (386)
T 3v65_B 352 DNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAQ 386 (386)
T ss_dssp TSCTTSSSEEECCSSSCEEECCTTCB-CSSSSCCBC
T ss_pred cCCCCCCceeeeCCCCCeeECCCCCc-CCCCCccCC
Confidence 99999999999999999999999999 889999973
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=440.24 Aligned_cols=300 Identities=29% Similarity=0.620 Sum_probs=266.3
Q ss_pred CcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ceeEeecCCC
Q psy5806 1011 TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IKPIPLMNDT 1089 (1332)
Q Consensus 1011 p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~~i~~~~~~ 1089 (1332)
|++||||++++. |++|+++... ....++++++.++.+||||+.+++|||+|...++|++++++ |+. .+.++..++.
T Consensus 3 ~~p~ll~~~~~~-I~~i~l~~~~-~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~-g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 3 SAPLLLYANRRD-LRLVDATNGK-ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN-KTESVQNVVVSGLL 79 (318)
T ss_dssp -CCEEEEECEEE-EEEEETTCTT-SCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT-SSSCCCEEEEECCS
T ss_pred CccEEEEEccCe-EEEEECCCCc-eEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc-CCCceEEEEcCCCC
Confidence 689999999999 9999998654 23456677888999999999999999999999999999988 443 3556667888
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
.|.|||+||.+++|||+|...++|.+++++|..++++ ..++..|++|||||..|+|||||++. .++|+|+++||
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE-----VPKIERAGMDG 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS-----SCEEEEEETTS
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CCEEEEEEcCC
Confidence 9999999999999999999999999999999987774 46888999999999999999999975 48999999999
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECC
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
+.+++++..++.+|+||++|+++++|||+|+.+++|+++++||+++++++. +.+|+||++ +++.|||+||.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav-------~~~~lywtd~~ 227 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-------FEDILYWTDWS 227 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE-------ETTEEEEEETT
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE-------eCCEEEEEecC
Confidence 999999988899999999999999999999999999999999999988887 899999999 89999999999
Q ss_pred CCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCCC-CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCC---CC
Q psy5806 1247 AMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ-LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE---PN 1322 (1332)
Q Consensus 1247 ~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q-~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~---~~ 1322 (1332)
+++|.+++|.+| +..+++..++..|++|++++..+| ...|||+.+||+|+|||++.+...+++|+||+||+ ++
T Consensus 228 ~~~V~~~~~~~G---~~~~~i~~~~~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~ 304 (318)
T 3sov_A 228 THSILACNKYTG---EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENG 304 (318)
T ss_dssp TTEEEEEETTTC---CSCEEEECCCSSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTS
T ss_pred CCeEEEEECCCC---CceEEEeCCCCCCcEEEEeccccccccccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCC
Confidence 999999999988 677888888999999999999988 47899999999999999988322268999999993 33
Q ss_pred cccccc
Q psy5806 1323 EECFEG 1328 (1332)
Q Consensus 1323 ~~c~~~ 1328 (1332)
-+|.++
T Consensus 305 ~~c~~~ 310 (318)
T 3sov_A 305 KTCKDG 310 (318)
T ss_dssp SCBCC-
T ss_pred CCCCCC
Confidence 478654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=436.05 Aligned_cols=297 Identities=35% Similarity=0.670 Sum_probs=268.1
Q ss_pred CCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCc-eEEEeCCCCC
Q psy5806 705 NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGR-ERLVVNDLNR 783 (1332)
Q Consensus 705 ~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~-~~vi~~~~~~ 783 (1332)
++++||+|+.+..|++++++... ....++++++.+++++|||+.+++|||+|...+.|+|+.++|+.. +.++..++..
T Consensus 2 g~~p~ll~~~~~~I~~i~l~~~~-~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 2 GSAPLLLYANRRDLRLVDATNGK-ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp --CCEEEEECEEEEEEEETTCTT-SCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred CCccEEEEEccCeEEEEECCCCc-eEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence 36789999999999999998753 234566678889999999999999999999999999999998864 5677778899
Q ss_pred ccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCC
Q psy5806 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTN 863 (1332)
Q Consensus 784 p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~ 863 (1332)
|.|||+||.+++|||+|...++|++++++|+.+++++...+..|++|||||..|+|||+||+.. ++|+|+.|||+.
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~----~~I~r~~~dG~~ 156 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV----PKIERAGMDGSS 156 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS----CEEEEEETTSCS
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC----CEEEEEEcCCCC
Confidence 9999999999999999999999999999999999988788899999999999999999999866 799999999999
Q ss_pred cEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEE
Q psy5806 864 RAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941 (1332)
Q Consensus 864 ~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~ 941 (1332)
+++++.. +.+|+||++|+.+ ++|||+|...++|++++++|..++++.. .+.+|+||+++++.|||+||.+++|.+++
T Consensus 157 ~~~~~~~~l~~Pnglavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 157 RFIIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACN 235 (318)
T ss_dssp CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCccEEEEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEE
Confidence 9988876 9999999999988 8999999999999999999999988876 78999999999999999999999999999
Q ss_pred CCCC---eEEEeeee--cCcceEEecc-ccCCCCCcccCCCCCCccccccCCC--CccccCCCCeeEccCCccccc
Q psy5806 942 KYDV---KDIVEFAQ--VDRPWLVRAA-QNISFPNACGSNNGGCSHLCLRNPT--NFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 942 ~~~g---~~i~~~~~--~~i~~~~~~~-~~~~~~n~C~~~nGgCshlCl~~p~--~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+.+| ++|...+. ++|+ ++++. ||.. .|||+.+||||||||++.|. +|+|+||.||.|..|+++|..
T Consensus 236 ~~~G~~~~~i~~~~~~P~~i~-v~~~~~q~~~-~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~ 309 (318)
T 3sov_A 236 KYTGEGLREIHSDIFSPMDIH-AFSQQRQPNA-TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 309 (318)
T ss_dssp TTTCCSCEEEECCCSSCCCEE-EECGGGSCCC-CCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBCC
T ss_pred CCCCCceEEEeCCCCCCcEEE-Eecccccccc-ccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCCC
Confidence 9888 56665543 8998 88865 5555 89999999999999999987 589999999999999999985
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=416.42 Aligned_cols=296 Identities=27% Similarity=0.538 Sum_probs=258.1
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCC---CCCceeEeecCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD---STRIKPIPLMND 1088 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~---g~~~~~i~~~~~ 1088 (1332)
++||||+++++ |++|+++..... ..++.+.+|.+++||+.+++|||+|...++|++++++. ++..+.++..++
T Consensus 1 ~~~ll~~~~~~-I~~i~~~~~~~~---~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 1 IAYLFFTNRHE-VRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp CCEEEEECBSS-EEEEETTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CCEEEEECCCe-EEEEECCCcceE---ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 47999999999 999999865433 22457788999999999999999999999999999873 144555665677
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
..|.|||+||.+++|||+|...++|.+++++|+.+++ +...+..|++|||||..|+|||++++. .++|+|+++|
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----~~~I~~~~~d 151 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLN 151 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETT
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----CCeEEEEcCC
Confidence 8999999999999999999999999999999988776 445788999999999999999999874 4799999999
Q ss_pred CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEE
Q psy5806 1168 GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWT 1243 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwt 1243 (1332)
|+.+++++...+.+|+||++|+++++|||+|+..++|++++++|+++++++. ..+|+||++ ++++|||+
T Consensus 152 G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav-------~~~~ly~~ 224 (316)
T 1ijq_A 152 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-------FEDKVFWT 224 (316)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-------ETTEEEEE
T ss_pred CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEE-------ECCEEEEE
Confidence 9999988887899999999999999999999999999999999999888875 579999999 88999999
Q ss_pred ECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCCC-CCCCCCCCC---CCCCCccceeccC----CCCceeeC
Q psy5806 1244 DWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ-LTWNPCAQD---NGGCSHLCFYKGR----TKGYVCGC 1315 (1332)
Q Consensus 1244 d~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q-~~~n~C~~~---ng~C~~lC~~~~~----~~~~~C~C 1315 (1332)
||.+++|.++++.+| +..+++..++..|++|+++++.+| .+.|||+.+ ||+|+|||++.+. ..+++|+|
T Consensus 225 d~~~~~V~~~~~~~g---~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C 301 (316)
T 1ijq_A 225 DIINEAIFSANRLTG---SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCAC 301 (316)
T ss_dssp ETTTTEEEEEETTTC---CCCEEEECSCSCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEEC
T ss_pred ECCCCeEEEEeCCCC---cceEEEecCCCCceEEEEeccccCCcccccccccccCCCCcCcccCCCccccCCCCCeEeeC
Confidence 999999999999998 777888888899999999999888 488999998 9999999998721 14689999
Q ss_pred CCCCC---CCcccc
Q psy5806 1316 PDDLE---PNEECF 1326 (1332)
Q Consensus 1316 ~~~~~---~~~~c~ 1326 (1332)
|+||+ ++.+|.
T Consensus 302 ~~g~~l~~d~~~C~ 315 (316)
T 1ijq_A 302 PDGMLLARDMRSCL 315 (316)
T ss_dssp CTTCEECTTSSCEE
T ss_pred CCCCEECCCCCccC
Confidence 99993 344785
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=417.02 Aligned_cols=292 Identities=33% Similarity=0.647 Sum_probs=258.9
Q ss_pred ccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCC----CCceEEEeCCCC
Q psy5806 707 SKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDM----TGRERLVVNDLN 782 (1332)
Q Consensus 707 ~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g----~~~~~vi~~~~~ 782 (1332)
++||+|+++.+|++++++...... + ++.+.++.+++||+.+++|||+|...+.|++++++| +..+.++..++.
T Consensus 1 ~~~ll~~~~~~I~~i~~~~~~~~~-~--~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 1 IAYLFFTNRHEVRKMTLDRSEYTS-L--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp CCEEEEECBSSEEEEETTSCCCEE-E--ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred CCEEEEECCCeEEEEECCCcceEe-h--hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 468999999999999998754322 2 357889999999999999999999999999999987 556677777788
Q ss_pred CccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCC
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGT 862 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~ 862 (1332)
.|.|||+||.+++|||+|...++|++.+++|+.+++++...+..|++||+||..|+|||++++.. ++|+|+.|||+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~----~~I~~~~~dG~ 153 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----AKIKKGGLNGV 153 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS----CEEEEEETTSC
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC----CeEEEEcCCCC
Confidence 99999999999999999999999999999999998888778899999999999999999999865 69999999999
Q ss_pred CcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec---cCCcceEEEEeCCEEEEEeCCCCEEE
Q psy5806 863 NRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA---VQSHPYTLTVLDYYVYWTDVQHSKIY 938 (1332)
Q Consensus 863 ~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~---~~~~P~~la~~~~~iywtD~~~~~i~ 938 (1332)
.+++++.. +.+|+||++|+.+ ++|||+|...++|++++++|..++++.. .+.+|+||++++++|||+||.+++|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~-~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccC-CEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEE
Confidence 99988876 9999999999988 8999999999999999999999988865 47899999999999999999999999
Q ss_pred EEECCCC---eEEEeeee--cCcceEEecc-ccCCCCCcccCC---CCCCccccccCC------CCccccCCCCeeEccC
Q psy5806 939 RANKYDV---KDIVEFAQ--VDRPWLVRAA-QNISFPNACGSN---NGGCSHLCLRNP------TNFTCACPTGILLSAD 1003 (1332)
Q Consensus 939 ~~~~~~g---~~i~~~~~--~~i~~~~~~~-~~~~~~n~C~~~---nGgCshlCl~~p------~~~~C~Cp~g~~l~~d 1003 (1332)
++++.+| +++..+++ ++|+ ++++. ||.. .|+|+.+ ||||+|||+++| ++|+|+||.||.|..|
T Consensus 233 ~~~~~~g~~~~~i~~~~~~p~~i~-v~~~~~qp~~-~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~d 310 (316)
T 1ijq_A 233 SANRLTGSDVNLLAENLLSPEDMV-LFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARD 310 (316)
T ss_dssp EEETTTCCCCEEEECSCSCCCCEE-EESGGGSCCC-CCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTT
T ss_pred EEeCCCCcceEEEecCCCCceEEE-EeccccCCcc-cccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECCC
Confidence 9999888 56665543 8898 88765 5656 8999998 999999999987 3699999999999999
Q ss_pred Ccccc
Q psy5806 1004 RRSCF 1008 (1332)
Q Consensus 1004 ~~tC~ 1008 (1332)
+++|.
T Consensus 311 ~~~C~ 315 (316)
T 1ijq_A 311 MRSCL 315 (316)
T ss_dssp SSCEE
T ss_pred CCccC
Confidence 99997
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=268.55 Aligned_cols=254 Identities=22% Similarity=0.427 Sum_probs=212.9
Q ss_pred cceEEEEeecceEEEEeCCCCCCCC----cccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLP----VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN 1087 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~----~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~ 1087 (1332)
.+||+|+..+. |++++++...... ..++. ...+|.++++|+.+++|||+|...++|++++++ +.....++..+
T Consensus 1 ~~~l~~~~~~~-I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQTGK-IERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTIIRQD 77 (267)
T ss_dssp CEEEEEEEEEE-EEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEECTT
T ss_pred CcEEEEEcCCe-EEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecC-CCCcEEEEECC
Confidence 36899999988 9999998654321 11111 235688999999999999999999999999987 55555565556
Q ss_pred CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l 1166 (1332)
+..|.+||+||.+++|||+|...++|.+++++|+.+++ +..++..|++|++||.+|+|||++++. ..++|+++++
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~ 153 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHM 153 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEET
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC----CCcEEEEEec
Confidence 67999999999999999999999999999999987665 444668999999999999999999863 1368999999
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
||+..+++....+..|+||++|+++++|||+|...++|.+++++|..++.++. +.+|+||++ ++++|||+++
T Consensus 154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-------d~~~lyva~~ 226 (267)
T 1npe_A 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS-------YGKNLYYTDW 226 (267)
T ss_dssp TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE-------ETTEEEEEET
T ss_pred CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE-------eCCEEEEEEC
Confidence 99988888766788999999999999999999999999999999988777777 889999999 7999999999
Q ss_pred CCCEEEEEEecCCCCcceEEEEecC-CCCeeeEEEEeC
Q psy5806 1246 EAMSVVIAREKSDTGQWDVHLIRSN-QEDFLNIKAISA 1282 (1332)
Q Consensus 1246 ~~~~V~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~~~~ 1282 (1332)
.+++|+++++.+| +....+..+ .+.|.+|.+...
T Consensus 227 ~~~~v~~~d~~~g---~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 227 KTNSVIAMDLAIS---KEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTTT---EEEEEECCSSCCCCCCEEEECS
T ss_pred CCCeEEEEeCCCC---CceEEEccccccccceeeecCc
Confidence 9999999999988 666666544 356888876544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=253.47 Aligned_cols=237 Identities=31% Similarity=0.536 Sum_probs=207.1
Q ss_pred cceEeeccceeEEEecCCCCCcc----eeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCC
Q psy5806 708 KFLLVSQTDKIRQISLDVEYRYP----IVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNR 783 (1332)
Q Consensus 708 ~~ll~s~~~~i~~i~l~~~~~~~----~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~ 783 (1332)
++|+|+++..|++++++...... ..+.. +..++.++++|+.+++|||+|...+.|.+++++|...+.++..++..
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 68999999999999998754321 12222 24678999999999999999999999999999998877777777889
Q ss_pred ccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCC
Q psy5806 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTN 863 (1332)
Q Consensus 784 p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~ 863 (1332)
|.+||+|+.+++|||+|...++|.+.+++|+.+++++..++..|++|++||..|+|||++++.. +++|+++.+||+.
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~---~~~I~~~~~dg~~ 157 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD---NPKIETSHMDGTN 157 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS---SCEEEEEETTSCC
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC---CcEEEEEecCCCC
Confidence 9999999999999999999999999999999888777667789999999998899999998731 2689999999999
Q ss_pred cEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEEC
Q psy5806 864 RAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 864 ~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~ 942 (1332)
++++... +..|+||++|..+ ++|||+|...++|.+++++|..++.+...+.+|++|++++++|||+++.+++|+++++
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence 8888755 8899999999988 8999999999999999999988777777788999999999999999999999999999
Q ss_pred CCCeEEE
Q psy5806 943 YDVKDIV 949 (1332)
Q Consensus 943 ~~g~~i~ 949 (1332)
.+|+++.
T Consensus 237 ~~g~~~~ 243 (267)
T 1npe_A 237 AISKEMD 243 (267)
T ss_dssp TTTEEEE
T ss_pred CCCCceE
Confidence 9885443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=219.35 Aligned_cols=265 Identities=14% Similarity=0.214 Sum_probs=201.9
Q ss_pred CCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEE
Q psy5806 563 IGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKV 642 (1332)
Q Consensus 563 ~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v 642 (1332)
..++||++......+|.+...||++.+.|... .+..|.+ .++.||+++...+ .
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~~~~i~~--~g~~Iyy~~~~~~---------~------------- 76 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---TAMYINA--DKNYVYYVRNNNQ---------K------------- 76 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---EEEEEEE--CSSEEEEEEECC------------------------
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---ceeeEEE--cCCEEEEEECCCC---------c-------------
Confidence 46899999865568999999999998877753 3556654 4788888754311 0
Q ss_pred EeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEe
Q psy5806 643 MTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQIS 722 (1332)
Q Consensus 643 ~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~ 722 (1332)
. + +..|+ -+.+..|+++.
T Consensus 77 ---------------------------------------~---------------~-------~~~~~-~~n~~~Iy~i~ 94 (302)
T 3s25_A 77 ---------------------------------------I---------------T-------SQTFF-SYDRNSLCRIK 94 (302)
T ss_dssp -----------------------------------------------------------------CCS-SCCSEEEEEEE
T ss_pred ---------------------------------------c---------------c-------cccee-ccCCCeEEEEe
Confidence 0 0 00111 13456788888
Q ss_pred cCCCCCcceeeecccccceeEEeecCCCceEEEEe---cCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEE
Q psy5806 723 LDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSD---ISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWT 799 (1332)
Q Consensus 723 l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD---~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwt 799 (1332)
+++.... .+. .. .+.++.+.+++|||++ .....|++++++|+..+.|..... +++||.+++|||+
T Consensus 95 ~dg~~~~-~l~--~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t 162 (302)
T 3s25_A 95 RNGHGST-VLD--PD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYN 162 (302)
T ss_dssp TTSCCCE-EEE--CS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEE
T ss_pred CCCCcce-Eee--cC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEE
Confidence 8875421 111 11 1223444678999999 678899999999999888776533 6789999999999
Q ss_pred eCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeE
Q psy5806 800 DMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLA 878 (1332)
Q Consensus 800 D~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~ 878 (1332)
+.+..+|.+++++|..++.+.. .+..++++|..|+|||++|+.. ++|+|+.|||+++++|.+. +. .
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~~----~~~~~~~~P~g~~iy~t~~~~~----~~I~~~~ldG~~~~~Lt~~~~~-----~ 229 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFYD----CNCYKPVVLDDTNVYYMDVNRD----NAIVHVNINNPNPVVLTEANIE-----H 229 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEEC----SCEEEEEEEETTEEEEEEGGGT----TEEEEECSSSCCCEECSCSCEE-----E
T ss_pred eCCCceEEEEECCCCCEEEEeC----CCccceeeecCCEEEEEEcCCC----cEEEEEECCCCCeEEEeCCCcc-----e
Confidence 9989999999999999887743 3556778899999999999866 7999999999999999876 52 3
Q ss_pred EeCCCCCeEEEE-eCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC
Q psy5806 879 IDYSDNPKLYWV-DTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV 945 (1332)
Q Consensus 879 iD~~~~~~lYw~-d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g 945 (1332)
+|+.+ ++|||+ ++....|+++++||..++.|... ...+|++++++|||+||..++|+++. .+|
T Consensus 230 ~~~~g-~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i~i~~d~Iy~td~~~~~i~~~~-~dG 293 (302)
T 3s25_A 230 YNVYG-SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQYVYFTDFVSNKEYCTS-TQN 293 (302)
T ss_dssp EEEET-TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEEEECSSEEEEEETTTCCEEEEE-SSS
T ss_pred EEECC-CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceEEEeCCEEEEEECCCCeEEEEE-CCC
Confidence 67778 999997 66679999999999999888653 35689999999999999999999986 444
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.4e-21 Score=217.33 Aligned_cols=265 Identities=14% Similarity=0.161 Sum_probs=200.9
Q ss_pred CCCCeEEEEeC-CCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEE
Q psy5806 882 SDNPKLYWVDT-SKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLV 960 (1332)
Q Consensus 882 ~~~~~lYw~d~-~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~ 960 (1332)
++ +.||+... ..+.|++++.+|+..+.|... .+..|.+.+++||.++...+.-
T Consensus 24 ~g-~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~----------------------- 77 (302)
T 3s25_A 24 SD-GEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYINADKNYVYYVRNNNQKI----------------------- 77 (302)
T ss_dssp ET-TEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEEEECSSEEEEEEECC--------------------------
T ss_pred eC-CEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeEEEcCCEEEEEECCCCcc-----------------------
Confidence 45 79999974 357999999999998887552 2566788899998885432210
Q ss_pred eccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccc
Q psy5806 961 RAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLP 1040 (1332)
Q Consensus 961 ~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~p 1040 (1332)
.+ ..|+ .+.+.. |+++.++...... +
T Consensus 78 ---~~----------------------------------------------~~~~-~~n~~~-Iy~i~~dg~~~~~-l-- 103 (302)
T 3s25_A 78 ---TS----------------------------------------------QTFF-SYDRNS-LCRIKRNGHGSTV-L-- 103 (302)
T ss_dssp ----------------------------------------------------CCS-SCCSEE-EEEEETTSCCCEE-E--
T ss_pred ---cc----------------------------------------------ccee-ccCCCe-EEEEeCCCCcceE-e--
Confidence 00 0000 012334 7888887654321 1
Q ss_pred cCCccceEEEEEeCCCcEEEEEe---CCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe
Q psy5806 1041 FPEYMSSIFFDYHYSKNLIYFAD---MRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR 1117 (1332)
Q Consensus 1041 i~~~~~~~~id~d~~~~~lY~sd---~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ 1117 (1332)
.+-.+.++.+.+++|||++ .....|++++++ |+..+.+..... +++||.+++|||++.....|.+++
T Consensus 104 ----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~ 173 (302)
T 3s25_A 104 ----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYD 173 (302)
T ss_dssp ----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEE
T ss_pred ----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEE
Confidence 1122346677889999999 567789999988 888877764332 678999999999998888999999
Q ss_pred eCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1118 SDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1118 ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
++|..++++.. .+..++++|..++|||++|+. ..+|+|++|||+++++|+.+.+ | .+|+.+++|||+
T Consensus 174 l~g~~~~~l~~---~~~~~~~~P~g~~iy~t~~~~-----~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~ 240 (302)
T 3s25_A 174 TASQSEALFYD---CNCYKPVVLDDTNVYYMDVNR-----DNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQ 240 (302)
T ss_dssp TTTTEEEEEEC---SCEEEEEEEETTEEEEEEGGG-----TTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEE
T ss_pred CCCCCEEEEeC---CCccceeeecCCEEEEEEcCC-----CcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEE
Confidence 99998887644 355667889999999999986 4789999999999998876544 2 478889999997
Q ss_pred -EcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 -DSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 -d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+...+.|+++++||++|+.|... ...+|++ ++++|||+||..++|++++ .+|
T Consensus 241 ~~~~~~~i~~~~~DG~~r~~l~~~-~~~~i~i-------~~d~Iy~td~~~~~i~~~~-~dG 293 (302)
T 3s25_A 241 RGGDNPALCVVKNDGTGFKELAKG-EFCNINV-------TSQYVYFTDFVSNKEYCTS-TQN 293 (302)
T ss_dssp ECSSSCEEEEEETTSCCCEEEEES-CEEEEEE-------CSSEEEEEETTTCCEEEEE-SSS
T ss_pred ECCCCcEEEEEECCCCccEEeeCC-ccceEEE-------eCCEEEEEECCCCeEEEEE-CCC
Confidence 66678999999999999888763 3458999 9999999999999999996 456
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-21 Score=172.56 Aligned_cols=77 Identities=36% Similarity=0.847 Sum_probs=71.6
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCEEecCCCEEEeeeecCCCCCCCCCCCc
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDE-MKCPQASPPKKCSP-DEHRCTTGHCILKTWLCDGIPDCSLGEDE 90 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE-~~C~~~~~~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE 90 (1332)
.+|.+.||+|. +|+|||..|+|||..||.||||| .+| ....|.+ .+|+|.+|+||+..|+|||..||.|||||
T Consensus 3 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~~C----~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE 77 (82)
T 2fyj_A 3 RTCPPNQFSCA-SGRCIPISWTCDLDDDCGDRSDESASC----AYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77 (82)
T ss_dssp SSSCTTEEETT-SSCEEETTSSSSCSSSSCSTTTTTSSC----CCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSC
T ss_pred CCCCCCceEeC-CCCEEeccccCCCcccCCCcccccccc----ccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccc
Confidence 47999999998 79999999999999999999999 799 4567964 89999999999999999999999999999
Q ss_pred cccc
Q psy5806 91 RNCN 94 (1332)
Q Consensus 91 ~~C~ 94 (1332)
.+|.
T Consensus 78 ~~C~ 81 (82)
T 2fyj_A 78 AGCS 81 (82)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 9985
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-21 Score=171.85 Aligned_cols=76 Identities=38% Similarity=0.919 Sum_probs=70.4
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCc--c
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE--R 91 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~ 91 (1332)
+|.+.||+|. +|+|||..|+|||..||.|||||.+| ....|.+.+|+|.+|+|||..|+|||..||.||||| .
T Consensus 2 ~C~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~C----~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~ 76 (80)
T 2fcw_B 2 TCSQAEFRCH-DGKCISRQFVCDSDRDCLDGSDEASC----PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 76 (80)
T ss_dssp CCCTTEEECT-TSCEEEGGGTTSSSCCSTTCTTTTTH----HHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred CCCCCccCCC-CCCEEeeecccCCcccCCCccccccc----ccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcc
Confidence 6999999998 89999999999999999999999999 345799999999999999999999999999999999 6
Q ss_pred ccc
Q psy5806 92 NCN 94 (1332)
Q Consensus 92 ~C~ 94 (1332)
+|.
T Consensus 77 ~C~ 79 (80)
T 2fcw_B 77 RCR 79 (80)
T ss_dssp GC-
T ss_pred cCC
Confidence 664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-17 Score=193.98 Aligned_cols=262 Identities=13% Similarity=0.118 Sum_probs=191.4
Q ss_pred eccceEEEEEEc-cCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCC----eEEEEeC
Q psy5806 465 NVKSVVAIAWES-ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN----WIEVSNL 539 (1332)
Q Consensus 465 ~~~~~~~i~~d~-~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~----~I~v~~l 539 (1332)
.+.++.+|++|+ .++.||++|.. ++|+++.+++.....+.. ....|.+||+|+.++.||++|...+ .+.+...
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 356788999998 68999999977 999999998876665554 6788999999998888999997433 5666777
Q ss_pred CCCCc--EEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEe-CCCCCceeeEEeccCCeEEEEeC
Q psy5806 540 DGTYP--TLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRLYWANV 616 (1332)
Q Consensus 540 ~g~~~--~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~-~~l~~p~glaiD~~~~rLYw~d~ 616 (1332)
+|... ..+. .+..|.+||++|..|+|||+|++ ..+|.+..+++.....+.. ....+|+||++|+..++|||+|.
T Consensus 213 ~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 213 ESGFKVITELT--KGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 77665 3333 57899999999988999999987 4799999999877644443 34578999999999999999999
Q ss_pred CCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCcccc
Q psy5806 617 GLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLR 696 (1332)
Q Consensus 617 ~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~ 696 (1332)
..+.|.++++||...+.. .+.++... ++ ..|+.
T Consensus 290 ~~~~I~~~~~d~~~~~~~----------------~~~~~ag~----------------------~g-------~~g~~-- 322 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLT----------------TPYIVCGQ----------------------QG-------AKDWV-- 322 (430)
T ss_dssp TTTEEEEEEEETTTTEEC----------------CCEEEEEC----------------------TT-------CBCCB--
T ss_pred CCCEEEEEeCCccccccc----------------ceEEEecc----------------------CC-------CCCCC--
Confidence 999999999998532210 00000000 00 00110
Q ss_pred CCCCccccCCccceEeeccceeEEEecCCCCCcceeeeccccccee-EEeecC-------CCceEEEEecCCCceEEEec
Q psy5806 697 EDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA-SVDVDT-------KNEYIYWSDISEKTIERVRF 768 (1332)
Q Consensus 697 ~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~-~id~d~-------~~~~lYwsD~~~~~I~r~~~ 768 (1332)
|+.. ....+..|. .+.++. .++.||++|...++|++++.
T Consensus 323 -dg~~--------------------------------~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~ 369 (430)
T 3tc9_A 323 -DGVG--------------------------------KKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP 369 (430)
T ss_dssp -CEEG--------------------------------GGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT
T ss_pred -CCCC--------------------------------cceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC
Confidence 1100 001233444 455532 35799999999999999998
Q ss_pred CCCCceEEEeC----------C-------CCCccceeEecCCCeEEEEeCCCCeEEEEeCC
Q psy5806 769 DMTGRERLVVN----------D-------LNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812 (1332)
Q Consensus 769 ~g~~~~~vi~~----------~-------~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld 812 (1332)
+|. ..++... + +..|.|||+|..+++||++|..+++|.+.+++
T Consensus 370 ~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 873 3444332 1 56899999998889999999999999998765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=189.84 Aligned_cols=246 Identities=13% Similarity=0.144 Sum_probs=185.8
Q ss_pred CCCCCccEEEec-cCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCC---CCceEEEcC
Q psy5806 508 NTKKPAGVAIDW-RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD---LHKIEMAGM 583 (1332)
Q Consensus 508 ~~~~p~glAvDw-~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~---~~~I~r~~~ 583 (1332)
.+..|.+||+|. -.++||++|.. ++|.+.++++...+.+. ..+..|.+|++++...+|||+|++. ...+.....
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 477999999998 58999999988 89999999987666665 4788999999999877899999853 224555666
Q ss_pred CCCce--EEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCc
Q psy5806 584 DGSHR--HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSK 661 (1332)
Q Consensus 584 dG~~~--~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~ 661 (1332)
+|... ..+. .+..|+|+++|+.+++|||+|...++|.+++.++.....+..
T Consensus 213 ~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~------------------------- 265 (430)
T 3tc9_A 213 ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT------------------------- 265 (430)
T ss_dssp GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE-------------------------
T ss_pred CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE-------------------------
Confidence 67543 3333 478999999999899999999999999888777542211100
Q ss_pred CcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccce
Q psy5806 662 KTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMV 741 (1332)
Q Consensus 662 ~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~ 741 (1332)
+.....|
T Consensus 266 -------------------------------------------------------------------------~~~~~~P 272 (430)
T 3tc9_A 266 -------------------------------------------------------------------------IQDSGWE 272 (430)
T ss_dssp -------------------------------------------------------------------------CSSSSCC
T ss_pred -------------------------------------------------------------------------cCCCCcc
Confidence 0011224
Q ss_pred eEEeecCCCceEEEEecCCCceEEEecCCCC-----ceEEEeC--------------CCCCcc-ceeEec-------CCC
Q psy5806 742 ASVDVDTKNEYIYWSDISEKTIERVRFDMTG-----RERLVVN--------------DLNRTE-SIAVDA-------IGR 794 (1332)
Q Consensus 742 ~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~-----~~~vi~~--------------~~~~p~-glAvD~-------~~~ 794 (1332)
..|++|+..++|||+|...++|+++..++.. ..++... .+..|. |++++. ..+
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence 5678888877899999999999998887642 2223221 256788 899963 356
Q ss_pred eEEEEeCCCCeEEEEeCCCCceEEEEe---------c-------CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEe
Q psy5806 795 KIYWTDMNAQTIMVSDIDGKNAKVLFW---------L-------NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH 858 (1332)
Q Consensus 795 nLYwtD~~~~~I~v~~ldG~~~~~l~~---------~-------~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~ 858 (1332)
+||++|..+++|.+.+.+|....+.-. . .+..|++||++|..|.||++|.+++ +|.+..
T Consensus 353 ~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~-----rIr~i~ 427 (430)
T 3tc9_A 353 DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR-----RIRKIG 427 (430)
T ss_dssp EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT-----EEEEEE
T ss_pred eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC-----eEEEEc
Confidence 899999999999999999965554432 1 1568999999997899999998866 898887
Q ss_pred cC
Q psy5806 859 MD 860 (1332)
Q Consensus 859 ~d 860 (1332)
++
T Consensus 428 ~e 429 (430)
T 3tc9_A 428 YE 429 (430)
T ss_dssp EC
T ss_pred cC
Confidence 65
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-16 Score=185.74 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=177.6
Q ss_pred CCCCCccEEEec--cCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCC---CCceEEEc
Q psy5806 508 NTKKPAGVAIDW--RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD---LHKIEMAG 582 (1332)
Q Consensus 508 ~~~~p~glAvDw--~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~---~~~I~r~~ 582 (1332)
.+..|.|||+|. -.++|||+|.. ++|.+.++.+...+.+. ..+..|.+||++|... ||++|++. ...+.+..
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 567899999998 47999999988 89999999554444444 4788999999999855 99999753 22344454
Q ss_pred CCCCce-EEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecC-CCceEEEEeecceEEEeeecCceeEEEEeCCCC
Q psy5806 583 MDGSHR-HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD-GTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRS 660 (1332)
Q Consensus 583 ~dG~~~-~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~d-G~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q 660 (1332)
.++... ...+. .+..|+|+++|+.+++|||+|...+.|.+++.+ |.....+..
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~------------------------ 268 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM------------------------ 268 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE------------------------
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec------------------------
Confidence 444332 12222 578999999999899999999998888888776 321111100
Q ss_pred cCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccc
Q psy5806 661 KKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKM 740 (1332)
Q Consensus 661 ~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~ 740 (1332)
. .. ...
T Consensus 269 --------------------------------------------------------------~-~~-----------~~~ 274 (433)
T 4hw6_A 269 --------------------------------------------------------------M-DT-----------KGS 274 (433)
T ss_dssp --------------------------------------------------------------C-SC-----------CSS
T ss_pred --------------------------------------------------------------c-CC-----------CCC
Confidence 0 00 001
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCC-----ceEEEeC--------------CCCCccceeE---------ecC
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTG-----RERLVVN--------------DLNRTESIAV---------DAI 792 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~-----~~~vi~~--------------~~~~p~glAv---------D~~ 792 (1332)
+..|++|+.+++||++|...++|+++..++.. ...+... .+..|.|||+ | .
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~ 353 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-D 353 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-C
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-C
Confidence 12467788877899999999999998877431 1233321 2567999999 5 5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEEEec----------------CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEE
Q psy5806 793 GRKIYWTDMNAQTIMVSDIDGKNAKVLFWL----------------NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856 (1332)
Q Consensus 793 ~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~----------------~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r 856 (1332)
.++||++|..+++|.+.+.+|....+.-.. .+..|.+||++|..|.||++|++++ +|.+
T Consensus 354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~-----rIr~ 428 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH-----RVRK 428 (433)
T ss_dssp CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT-----EEEE
T ss_pred CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC-----EEEE
Confidence 678999999999999999999655443211 2567999999988899999999866 8888
Q ss_pred EecC
Q psy5806 857 AHMD 860 (1332)
Q Consensus 857 ~~~d 860 (1332)
..++
T Consensus 429 i~~e 432 (433)
T 4hw6_A 429 IAPE 432 (433)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7664
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-16 Score=184.11 Aligned_cols=247 Identities=16% Similarity=0.091 Sum_probs=186.1
Q ss_pred CCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCc
Q psy5806 508 NTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSH 587 (1332)
Q Consensus 508 ~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~ 587 (1332)
.+..|.+||+|. .++|||+|...++|.+.++++...+.+.. ....|. ++++|..++|||+++....+|.+...++..
T Consensus 129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHP-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEE-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeec-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 477999999995 67799999999999999998766665553 467788 999999999999998655589888887765
Q ss_pred eEEEE----eCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCc
Q psy5806 588 RHILA----SDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKT 663 (1332)
Q Consensus 588 ~~~l~----~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~ 663 (1332)
....+ ......|+++++|+.+++||++|. .+.|.++++++.....+...
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~-------------------------- 258 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQL-------------------------- 258 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEEC--------------------------
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecc--------------------------
Confidence 43333 325688999999999999999876 57888888776543222100
Q ss_pred CCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeeccccccee-
Q psy5806 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA- 742 (1332)
Q Consensus 664 ~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~- 742 (1332)
+ .... ...+|.
T Consensus 259 -----------------~-----------------------------------------~~g~----------~~~~P~~ 270 (409)
T 3hrp_A 259 -----------------E-----------------------------------------LSGS----------LGTNPGP 270 (409)
T ss_dssp -----------------C-----------------------------------------CCSC----------CCCSSCC
T ss_pred -----------------c-----------------------------------------ccCC----------CCCCccc
Confidence 0 0000 001123
Q ss_pred EEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCC--------------CCCccceeEecCCCeEEEEeC-CCCeEE
Q psy5806 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVND--------------LNRTESIAVDAIGRKIYWTDM-NAQTIM 807 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~--------------~~~p~glAvD~~~~nLYwtD~-~~~~I~ 807 (1332)
++++|+.++.||++|...++|++++.+|. ...+.... +..|.|||+|..++ ||++|. ..++|.
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~ 348 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLR 348 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEE
Confidence 67888888999999999999999999886 34444332 67799999998765 999999 999999
Q ss_pred EEe-CCCCceEEEEe-------------cCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC
Q psy5806 808 VSD-IDGKNAKVLFW-------------LNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860 (1332)
Q Consensus 808 v~~-ldG~~~~~l~~-------------~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d 860 (1332)
+.+ .+|....+.-. ..+..|.+||+++. |.||++|++.+ +|.|..++
T Consensus 349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~-----~Ir~i~~e 409 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGK-----AIRKYAVE 409 (409)
T ss_dssp EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTC-----EEEEEEEC
T ss_pred EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCC-----eEEEEEeC
Confidence 999 56654433322 01568999999998 99999998866 89887653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-16 Score=185.57 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=184.6
Q ss_pred eccceEEEEEEc--cCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCC----CeEEEEe
Q psy5806 465 NVKSVVAIAWES--ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEY----NWIEVSN 538 (1332)
Q Consensus 465 ~~~~~~~i~~d~--~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~----~~I~v~~ 538 (1332)
.+..+.+|++|+ .++.|||+|.. ++|+++.+.+....++. ..+..|.+||+|+.++ ||++|... ..+.+..
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 356788999998 48999999987 99999998655444443 4677899999999877 99999743 2344555
Q ss_pred CCCCCc-EEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCC-CCceEEEE-eCCCCCceeeEEeccCCeEEEEe
Q psy5806 539 LDGTYP-TLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMD-GSHRHILA-SDSLKNPTGLAIDLENSRLYWAN 615 (1332)
Q Consensus 539 l~g~~~-~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~d-G~~~~~l~-~~~l~~p~glaiD~~~~rLYw~d 615 (1332)
.++... ...+ ..+..|.+||+||..|.|||+|++ ..+|.+...+ |.....+. .....++.+|++|+.+++|||+|
T Consensus 214 ~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~-~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 214 RASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYH-HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTT-CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECC-CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 555443 1222 258899999999988999999986 4789999998 65423343 33456788999999999999999
Q ss_pred CCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccc
Q psy5806 616 VGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695 (1332)
Q Consensus 616 ~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l 695 (1332)
...+.|.++++|+...+.. ...++.. .++ ..|+.
T Consensus 292 ~~~~~I~~~~~d~~~~~~~----------------~~~~~ag----------------------~~g-------~~g~~- 325 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLA----------------VPYIVCG----------------------QHS-------SPGWV- 325 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBC----------------CCEEEEE----------------------CTT-------CCCCB-
T ss_pred CCCCEEEEEeCCCCCcccC----------------cEEEEEe----------------------cCC-------CCccC-
Confidence 9999999999886421100 0000000 000 00110
Q ss_pred cCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEee--------cCCCceEEEEecCCCceEEEe
Q psy5806 696 REDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDV--------DTKNEYIYWSDISEKTIERVR 767 (1332)
Q Consensus 696 ~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~--------d~~~~~lYwsD~~~~~I~r~~ 767 (1332)
|+ ......+..|.++++ |..++.||++|...++|+++.
T Consensus 326 --dg--------------------------------~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 326 --DG--------------------------------MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp --CE--------------------------------EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred --CC--------------------------------cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 11 000113455777777 245689999999999999998
Q ss_pred cCCCCceEEEeC-----------------CCCCccceeEecCCCeEEEEeCCCCeEEEEeCC
Q psy5806 768 FDMTGRERLVVN-----------------DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812 (1332)
Q Consensus 768 ~~g~~~~~vi~~-----------------~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld 812 (1332)
.+| ...++... .+..|.|||+|...++||++|..+++|.+.+++
T Consensus 372 ~~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 PEG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 877 33334321 156799999998888999999999999998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-14 Score=161.27 Aligned_cols=276 Identities=11% Similarity=0.103 Sum_probs=201.0
Q ss_pred cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
...|.+|++|..+ +||+++...+.|..++.+|........ ....|.+|++. ++.||+++...+.|.+.+.. ++
T Consensus 19 ~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-- 93 (300)
T 2qc5_A 19 DSGPYGITSSEDG--KVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-- 93 (300)
T ss_dssp TCCEEEEEECTTS--CEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCCcceeeECCCC--CEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC--
Confidence 6689999999876 899999888999999988443322222 45788999987 46888888777777653321 10
Q ss_pred EeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEe
Q psy5806 949 VEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRIS 1028 (1332)
Q Consensus 949 ~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~ 1028 (1332)
+..+.
T Consensus 94 ---------------------------------------------------------------------------~~~~~ 98 (300)
T 2qc5_A 94 ---------------------------------------------------------------------------FTEYP 98 (300)
T ss_dssp ---------------------------------------------------------------------------EEEEE
T ss_pred ---------------------------------------------------------------------------eEEec
Confidence 00001
Q ss_pred CCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC
Q psy5806 1029 LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1029 l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~ 1108 (1332)
+. .....+.++++++. ++||+++...+.|++++.+ +.............|.+|++|.. ++||+++.
T Consensus 99 ~~-----------~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~ 164 (300)
T 2qc5_A 99 LP-----------QPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD-NALWFTEN 164 (300)
T ss_dssp CS-----------STTCCEEEEEECST-TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-SSEEEEET
T ss_pred CC-----------CCCCCCccceECCC-CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-CCEEEEec
Confidence 00 00123677888864 5699999878899999865 43332222224568999999964 55999998
Q ss_pred CCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEE
Q psy5806 1109 QMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAI 1187 (1332)
Q Consensus 1109 ~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glai 1187 (1332)
..+.|.+++.+|+.... +......|.+|++++ .|.||+++.+. +.|.+.+.+|.............|.+|++
T Consensus 165 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 165 QNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMG------NKIGRITTTGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp TTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT------TEEEEECTTCCEEEEECSSTTCCEEEEEE
T ss_pred CCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCC------CEEEEEcCCCcEEEEECCCCCCCceEEEE
Confidence 88899999988876654 334567899999999 78999999765 67999999776554434445678999999
Q ss_pred ecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1188 DFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
|.+ ++||+++...+.|.+++.+|......+. ...|.+|++ +.++.||+++. + .|.++++.
T Consensus 238 d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~------~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 238 GKN-SEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF------GKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CST-TCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEE------CTTSCEEEECS-S-EEEEEEEC
T ss_pred CCC-CCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEe------CCCCCEEEEcc-C-ceEEeCCC
Confidence 976 5699999888999999997754433333 578999999 44688999998 6 99998864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-15 Score=176.32 Aligned_cols=264 Identities=14% Similarity=0.130 Sum_probs=190.7
Q ss_pred CCCCCCccEEEec-cCCeEEEEeCCCCeEEEEeCCCCCcEEEEeC---CCCCceEEEE-------ecCCCeEEEEecCC-
Q psy5806 507 HNTKKPAGVAIDW-RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQ---NLSEPRDIAV-------NPIGGIMYWCSWGD- 574 (1332)
Q Consensus 507 ~~~~~p~glAvDw-~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~---~~~~P~~iav-------dp~~G~lywtd~g~- 574 (1332)
..+..|.+||||+ -.++||+++...++|.+.++.+...++|+.. .+..|++|++ ++...+||.+|+..
T Consensus 136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 3467899999998 4899999998888999999998887777743 3567999999 99877899999875
Q ss_pred ----CCceEEE--cCCCCce-----EEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecC-------CCceEEEEe
Q psy5806 575 ----LHKIEMA--GMDGSHR-----HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD-------GTRKQTLIA 636 (1332)
Q Consensus 575 ----~~~I~r~--~~dG~~~-----~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~d-------G~~~~~~~~ 636 (1332)
.++|... ..+|.-. ..+. .+.+|+|+++|+.+++||++|...+.|.+++++ +....
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~---- 289 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW---- 289 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC----
T ss_pred CcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee----
Confidence 2345555 3334432 2333 467999999999999999999999999988876 21000
Q ss_pred ecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccc
Q psy5806 637 LHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTD 716 (1332)
Q Consensus 637 ~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~ 716 (1332)
.|. . +.. + .
T Consensus 290 -------------------------------------------tp~---~-------------------~~~----~--g 298 (496)
T 3kya_A 290 -------------------------------------------DPI---V-------------------KNN----P--N 298 (496)
T ss_dssp -------------------------------------------CCB---G-------------------GGC----T--T
T ss_pred -------------------------------------------ccc---c-------------------ccc----c--c
Confidence 000 0 000 0 0
Q ss_pred eeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCc-----eEEEeC------------
Q psy5806 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGR-----ERLVVN------------ 779 (1332)
Q Consensus 717 ~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~-----~~vi~~------------ 779 (1332)
.+..+ ..++....+..|++++..+.||++|...++|+++..++... .++...
T Consensus 299 ~~~~l-----------~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~ 367 (496)
T 3kya_A 299 TFKQL-----------FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT 367 (496)
T ss_dssp TEEEE-----------EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred cccee-----------EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence 00000 01111223567889998888999999999999998887542 233321
Q ss_pred --CCCCcc-ceeEec------CCCeEEEEeCCCCeEEEEeCCCCceEEEEe---------------c-------CCCCCe
Q psy5806 780 --DLNRTE-SIAVDA------IGRKIYWTDMNAQTIMVSDIDGKNAKVLFW---------------L-------NLYRPR 828 (1332)
Q Consensus 780 --~~~~p~-glAvD~------~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~---------------~-------~~~~P~ 828 (1332)
.+..|. |+++|- ..++||++|..+++|.+.+.+|...++.-. . .+..|.
T Consensus 368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 256799 888873 567899999999999999999965554321 0 256799
Q ss_pred EEEEeCCCCeEEEEecccCcCCCCceEEEecCCCC
Q psy5806 829 SIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTN 863 (1332)
Q Consensus 829 ~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~ 863 (1332)
+||+++.+|.||++|.+++ +|++..++|..
T Consensus 448 gIavd~~~g~lyVaD~~N~-----rIrki~~~~~~ 477 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQVGH-----TIRTISMEQEE 477 (496)
T ss_dssp EEEEETTTTEEEEEETTTT-----EEEEEEECCCC
T ss_pred EEEEECCCCEEEEEeCCCC-----EEEEEECCCCc
Confidence 9999998899999998866 89999998764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-15 Score=176.48 Aligned_cols=222 Identities=15% Similarity=0.142 Sum_probs=161.1
Q ss_pred ceEEEEee--cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC-eEEEEECCCCCCceeEe---ec
Q psy5806 1013 EFLLYTSR--FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG-NLRTFDMSDSTRIKPIP---LM 1086 (1332)
Q Consensus 1013 ~~ll~~~~--~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~-~I~~~~l~~g~~~~~i~---~~ 1086 (1332)
..|+++.. +. |++++++....... . .....+. +++++.++.|||++...+ .|++++...+.....+. ..
T Consensus 142 g~lyv~d~~~~~-I~~id~~~g~~~~~-~--~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~ 216 (409)
T 3hrp_A 142 NTVLAYQRDDPR-VRLISVDDNKVTTV-H--PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST 216 (409)
T ss_dssp TEEEEEETTTTE-EEEEETTTTEEEEE-E--ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred CCEEEEecCCCc-EEEEECCCCEEEEe-e--ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch
Confidence 34555543 45 88888764322111 1 1233455 899999999999998665 89999966332222221 11
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE----ecC--CCCce-EEEEcCCCcEEEEEecCCCCCCCCC
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL----VND--LMEPL-AIAVYPRRGLLFYSHWGLYDNSPTT 1159 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~----~~~--~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~ 1159 (1332)
....|.++|+|+.+++||+++. .++|.++++++.....+ ..+ ...|. +|+++|..|.||+++... +
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~------~ 289 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL------S 289 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT------T
T ss_pred hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC------C
Confidence 4568999999988999999876 67899999986654444 211 12377 999999889999999876 7
Q ss_pred cEEEEecCCCceEEEEecC--------------CCCcceEEEecCCCEEEEEEc-CCCeEEEEe-cCCCceEEEEe----
Q psy5806 1160 KIEKVYLDGSYRTVLVEED--------------LAFPNELAIDFKQRRLFWADS-TNKRIEYCD-FFGRSRKIVIS---- 1219 (1332)
Q Consensus 1160 ~I~r~~ldG~~~~~l~~~~--------------l~~p~glaiD~~~~~LY~~d~-~~~~I~~~d-~dG~~~~~~~~---- 1219 (1332)
+|++++++|.. ..+.... +..|+||++|+++. ||++|. .+++|.+++ .+|. ...+..
T Consensus 290 ~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~ 366 (409)
T 3hrp_A 290 SVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY-VSTVAGQVDV 366 (409)
T ss_dssp EEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE-EEEEEECTTC
T ss_pred EEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE-EEEEeCCCCC
Confidence 99999999973 3444322 67899999998755 999999 999999999 4554 333332
Q ss_pred ------------ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1220 ------------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1220 ------------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
+..|.||++ +.++.||++|+.+++|.++.+
T Consensus 367 ~g~~~g~~~~~~~~~P~giav------d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICY------DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEE------CSSSEEEEEESTTCEEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEE------cCCCCEEEEECCCCeEEEEEe
Confidence 357999999 345899999999999999875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=157.18 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=199.0
Q ss_pred cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe--ccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeE
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--AVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKD 947 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~--~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~ 947 (1332)
...|.+|++|..+ +||+++...+.|..++.+|. ...+. .....|.+|++. ++.||+++...+.|.+.+.. +
T Consensus 14 ~~~~~~i~~d~~g--~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-- 87 (299)
T 2z2n_A 14 DTGPYGITVSDKG--KVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G-- 87 (299)
T ss_dssp SCCEEEEEECTTS--CEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S--
T ss_pred CCCccceEECCCC--CEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C--
Confidence 6788999999876 79999988889999998844 33332 245678899986 56888888777776653211 0
Q ss_pred EEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEE
Q psy5806 948 IVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRI 1027 (1332)
Q Consensus 948 i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i 1027 (1332)
. +..+
T Consensus 88 --------------------------------------------------------------------------~-~~~~ 92 (299)
T 2z2n_A 88 --------------------------------------------------------------------------I-IKEY 92 (299)
T ss_dssp --------------------------------------------------------------------------C-EEEE
T ss_pred --------------------------------------------------------------------------c-EEEE
Confidence 0 0111
Q ss_pred eCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEc
Q psy5806 1028 SLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYID 1107 (1332)
Q Consensus 1028 ~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td 1107 (1332)
.+. .....|.+|++++. ++||+++...+.|++++.+ +.............|.+|++|. .++||+++
T Consensus 93 ~~~-----------~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~ 158 (299)
T 2z2n_A 93 TLP-----------NPDSAPYGITEGPN-GDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGS-DNALWFTE 158 (299)
T ss_dssp ECS-----------STTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEE
T ss_pred eCC-----------CcCCCceeeEECCC-CCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcC-CCCEEEEe
Confidence 110 01224678888865 5799998888899999863 4433322223456799999995 56899999
Q ss_pred CCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEE
Q psy5806 1108 SQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186 (1332)
Q Consensus 1108 ~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~gla 1186 (1332)
...+.|.+++.+|+.... +......|.+|++++ .|.||+++... ..|.+++.+|.............|.+|+
T Consensus 159 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 159 NQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEIIG------NKIGRITTSGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT------TEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCC------ceEEEECCCCcEEEEECCCCCCCceeEE
Confidence 888899999887776554 334567899999999 58899998765 6799999976544322333457899999
Q ss_pred EecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1187 IDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+|.+ ++||+++...+.|.+++.+|..+..... ...|.+|++ .++.||+++. .+.|.+++..++
T Consensus 232 ~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 232 AGAG-IDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ECST-TCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-------CSSCEEEEET-TTEEEEEEEC--
T ss_pred ECCC-CCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-------cCCCEEEEec-CCcEEEEEcCcc
Confidence 9976 5699999888999999997643333233 578999999 8899999987 689999997664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=157.27 Aligned_cols=281 Identities=14% Similarity=0.170 Sum_probs=203.9
Q ss_pred CCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCC
Q psy5806 507 HNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGS 586 (1332)
Q Consensus 507 ~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~ 586 (1332)
.....|.+|++|. .++||+++...+.|.+.+.+|+.....+...+..|.+|++++. |.||+++.+ ..+|.+.+.+|.
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~-~~~v~~~d~~g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-GDIWFTENG-ANKIGKLSKKGG 93 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTT-SCEEEEETT-TTEEEEECTTSC
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCC-CCEEEEecC-CCeEEEECCCCC
Confidence 4467899999997 4789999988899999998866554334345688999999975 889999854 467999988876
Q ss_pred ceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCC
Q psy5806 587 HRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPC 666 (1332)
Q Consensus 587 ~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC 666 (1332)
.+..........|.+|++|. .++||+++...+.|.+++.+|.... +
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~-~-------------------------------- 139 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYE-Y-------------------------------- 139 (300)
T ss_dssp EEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEE-E--------------------------------
T ss_pred eEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEE-c--------------------------------
Confidence 54333333457899999996 5679999877667766655532110 0
Q ss_pred cCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEee
Q psy5806 667 NENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDV 746 (1332)
Q Consensus 667 ~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~ 746 (1332)
.+.. ....+.++++
T Consensus 140 -------------------------------------------------------~~~~-----------~~~~~~~i~~ 153 (300)
T 2qc5_A 140 -------------------------------------------------------DLPN-----------KGSYPAFITL 153 (300)
T ss_dssp -------------------------------------------------------ECSS-----------TTCCEEEEEE
T ss_pred -------------------------------------------------------cCCC-----------CCCCceeEEE
Confidence 0000 1123456677
Q ss_pred cCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCC
Q psy5806 747 DTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYR 826 (1332)
Q Consensus 747 d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~ 826 (1332)
|+. +++|+++...+.|.+++.+|.............|.+|++|.. ++||+++...+.|.+.+.+|+............
T Consensus 154 d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 231 (300)
T 2qc5_A 154 GSD-NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGND-GALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231 (300)
T ss_dssp CTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCC-CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcCCCcEEEEECCCCCCC
Confidence 765 569999988888999988655433212234678999999975 579999999999999999887665544445678
Q ss_pred CeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEcc
Q psy5806 827 PRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902 (1332)
Q Consensus 827 P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~ 902 (1332)
|.+|++++. |.||+++.+.+ +|.+...+|......... ...|.++++|..+ +||+++. . .|.++++
T Consensus 232 ~~~i~~d~~-g~l~v~~~~~~-----~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 232 PHAITAGKN-SEIWFTEWGAN-----QIGRITNDNTIQEYQLQTENAEPHGITFGKDG--SVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEEECST-TCEEEEETTTT-----EEEEECTTSCEEEEECCSTTCCCCCEEECTTS--CEEEECS-S-EEEEEEE
T ss_pred ceEEEECCC-CCEEEeccCCC-----eEEEECCCCcEEEEECCccCCccceeEeCCCC--CEEEEcc-C-ceEEeCC
Confidence 999999987 88999997644 799988877544332332 6789999999876 7999987 5 8887765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=172.94 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=162.9
Q ss_pred CccceEEEEEeCCCcEEEEEeCCC------------------------CeEEEEECCCCCCceeEeecCCCCceeeEEEe
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRS------------------------GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW 1098 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~------------------------~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw 1098 (1332)
.+..+.+|++++.+ +||+++... ++|++++..+|.-........+..|.|||+|.
T Consensus 22 ~l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred ecCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 35678999999874 799999766 46888886544433222223356899999996
Q ss_pred cCCeEEEEcCCCceEEEEeeCCc--eEEEE---------ecCCCCceEEEEcCCCcEEEEEec-CCCCCCCCCcEEEEec
Q psy5806 1099 VANNIYYIDSQMHTINVARSDGQ--HKKIL---------VNDLMEPLAIAVYPRRGLLFYSHW-GLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1099 ~~~~LY~td~~~~~I~v~~ldG~--~~~~~---------~~~~~~P~~iavdp~~g~Lywtd~-~~~~~~~~~~I~r~~l 1166 (1332)
.++||+++...++|.+++.+|. ....+ ...+..|.+||++|.+|.||+++. +. .+|.+.+.
T Consensus 101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~------~~I~~~~~ 173 (329)
T 3fvz_A 101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN------SRIVQFSP 173 (329)
T ss_dssp -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC------CEEEEECT
T ss_pred -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC------CeEEEEcC
Confidence 5559999999999999999987 33334 234568999999998899999996 55 78999999
Q ss_pred CCCceEEEEe---------cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEe---ecccceEEEecCCc
Q psy5806 1167 DGSYRTVLVE---------EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVIS---KVAPYGLSVRQSPG 1233 (1332)
Q Consensus 1167 dG~~~~~l~~---------~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~---~~~P~glav~~~~~ 1233 (1332)
+|.....+.. ..+..|.||++|+++++||++|..+++|.+++.+ |+....+.. ...|+++++.....
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~ 253 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL 253 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence 9987666642 2346699999999889999999999999999998 765555532 44556555510000
Q ss_pred cccccEEEEEECCCCEEEEEEecCCCCcceEEEEe---cCCCCeeeEE
Q psy5806 1234 KAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR---SNQEDFLNIK 1278 (1332)
Q Consensus 1234 ~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~---~~~~~~~~i~ 1278 (1332)
-+.++.+|+++...++|+.++..+| +....+. .....|.+|.
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEE
Confidence 0235567777777889999998887 5555542 3344566664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=171.61 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=191.9
Q ss_pred ccceEEEEEEc-cCCeEEEEcCCCceEEEEEecCcceEEEEeCC---CCCCccEEE-------eccCCeEEEEeCCC---
Q psy5806 466 VKSVVAIAWES-ANDSLYWADVENGEINRAHINGTFQYNVIRHN---TKKPAGVAI-------DWRTNKLYWTESEY--- 531 (1332)
Q Consensus 466 ~~~~~~i~~d~-~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~---~~~p~glAv-------Dw~~~~lYw~d~~~--- 531 (1332)
+..+.+|+||+ ..++||+++...+.|+++++.+....+++..+ +..|.+||+ |..++.||+++...
T Consensus 138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 55688999999 58999999988889999999887777777643 457999999 98888899998765
Q ss_pred ---CeEEEEeC--CCCCc-----EEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCC--------CCc------
Q psy5806 532 ---NWIEVSNL--DGTYP-----TLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMD--------GSH------ 587 (1332)
Q Consensus 532 ---~~I~v~~l--~g~~~-----~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~d--------G~~------ 587 (1332)
..|.+.+. +|... ..+. .+..|.+|++||..|+||+++++ ..+|.+..++ |..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~-~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETT-TTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred ccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECC-CCEEEEEecccccccccCceeeccccc
Confidence 23666643 34553 2333 46799999999999999999987 4689999987 332
Q ss_pred -----eEEEE-eCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceE-----EEEeecceEEEeeecCceeEEEEe
Q psy5806 588 -----RHILA-SDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQ-----TLIALHHLKVMTKVVGLTDIDIFH 656 (1332)
Q Consensus 588 -----~~~l~-~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~-----~~~~~~~l~v~~~~~~~~~i~v~~ 656 (1332)
...+. ...-.||.+|++|+..+.||++|...++|.++++||.... ++..
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG-------------------- 354 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVG-------------------- 354 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEE--------------------
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecC--------------------
Confidence 12333 3345789999999999999999999999999999986432 1110
Q ss_pred CCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecc
Q psy5806 657 RRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLR 736 (1332)
Q Consensus 657 ~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~ 736 (1332)
. ++ ..|+. |+. ....
T Consensus 355 -~----------------------~g-------~~G~~---DG~--------------------------------~~~a 369 (496)
T 3kya_A 355 -G----------------------YK-------QSGYR---DDV--------------------------------GTEA 369 (496)
T ss_dssp -B----------------------TT-------BCCCB---CCB--------------------------------GGGC
T ss_pred -C----------------------CC-------CCccc---CCc--------------------------------cccc
Confidence 0 00 01111 110 0001
Q ss_pred ccccee-EEeecC------CCceEEEEecCCCceEEEecCCCCceEEEeC-----------------------CCCCccc
Q psy5806 737 QLKMVA-SVDVDT------KNEYIYWSDISEKTIERVRFDMTGRERLVVN-----------------------DLNRTES 786 (1332)
Q Consensus 737 ~~~~~~-~id~d~------~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~-----------------------~~~~p~g 786 (1332)
.+..|. .+.+|. .++.||++|...++|+++.++| ...++... .+..|.|
T Consensus 370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 344555 455542 5689999999999999999887 44555432 1567999
Q ss_pred eeEecCCCeEEEEeCCCCeEEEEeCCCCce
Q psy5806 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNA 816 (1332)
Q Consensus 787 lAvD~~~~nLYwtD~~~~~I~v~~ldG~~~ 816 (1332)
||+|..+++||++|..+++|.+.++++...
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 999988789999999999999999987643
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-17 Score=144.33 Aligned_cols=72 Identities=35% Similarity=0.856 Sum_probs=66.2
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccccc-cCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceec
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK-TCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCF 136 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~-~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci 136 (1332)
.|++.+|+|.+|+||+..|+|||..||.|||||.+|.. .|.+. +|+|.+ + .||
T Consensus 2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~-~f~C~~------------------------g-~Ci 55 (80)
T 2fcw_B 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNS------------------------S-TCI 55 (80)
T ss_dssp CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTT-EEECTT------------------------S-CEE
T ss_pred CCCCCccCCCCCCEEeeecccCCcccCCCcccccccccccCCce-eeECCC------------------------C-CEE
Confidence 58899999999999999999999999999999999975 48887 999976 3 599
Q ss_pred CCccccCCCCCCCCCCCCC
Q psy5806 137 SKKYLCDGKKHCPRGEEGP 155 (1332)
Q Consensus 137 ~~~~~Cdg~~dC~dg~de~ 155 (1332)
+..|+|||..||.||+||.
T Consensus 56 ~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 56 PQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp EGGGTTSSSCCSTTCGGGC
T ss_pred ecccccCCCcCCCCCCCcC
Confidence 9999999999999999994
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-16 Score=141.94 Aligned_cols=73 Identities=30% Similarity=0.825 Sum_probs=65.8
Q ss_pred CCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCc-ccccc-cCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCce
Q psy5806 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE-RNCNK-TCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKD 134 (1332)
Q Consensus 57 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE-~~C~~-~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1332)
..|.+.+|+|.+|+|||..|+|||..||.||||| .+|.. .|.+..+|+|.+ + .
T Consensus 3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~------------------------g-~ 57 (82)
T 2fyj_A 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN------------------------G-R 57 (82)
T ss_dssp SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTT------------------------S-C
T ss_pred CCCCCCceEeCCCCEEeccccCCCcccCCCccccccccccccCCCCCceECCC------------------------C-C
Confidence 4689999999999999999999999999999999 89975 486533899987 3 5
Q ss_pred ecCCccccCCCCCCCCCCCC
Q psy5806 135 CFSKKYLCDGKKHCPRGEEG 154 (1332)
Q Consensus 135 Ci~~~~~Cdg~~dC~dg~de 154 (1332)
||+..++|||..||.||+||
T Consensus 58 CI~~~~~CDG~~DC~DgSDE 77 (82)
T 2fyj_A 58 CININWRCDNDNDCGDNSDE 77 (82)
T ss_dssp EEETTCBSSSSBCCSSSSSC
T ss_pred eEcHHHccCCCCcCCCCccc
Confidence 99999999999999999999
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=163.13 Aligned_cols=204 Identities=19% Similarity=0.254 Sum_probs=153.1
Q ss_pred cccccCCcc---ceEEEEEeCCCcEEEE-EeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCce
Q psy5806 1037 VTLPFPEYM---SSIFFDYHYSKNLIYF-ADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHT 1112 (1332)
Q Consensus 1037 ~~~pi~~~~---~~~~id~d~~~~~lY~-sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~ 1112 (1332)
...|+.++. .|.+|++++.+ +||+ ++...+.|.+++.. +.....+...+...|.+|++|.. ++||+++. .+.
T Consensus 13 ~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~ 88 (270)
T 1rwi_B 13 TVLPFTGIDFRLSPSGVAVDSAG-NVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNR 88 (270)
T ss_dssp EECCCCSCSSCCCEEEEEECTTC-CEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTT-CCEEEEET-TTE
T ss_pred ccCccccccccCCccceEECCCC-CEEEEccCCCCcEEEecCC-CcccceEeeCCcCCcceeEECCC-CCEEEEcC-CCE
Confidence 344555555 89999999876 4999 88888999998854 22222222234568999999974 56999998 779
Q ss_pred EEEEeeCCceEEEE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCC
Q psy5806 1113 INVARSDGQHKKIL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1113 I~v~~ldG~~~~~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~ 1191 (1332)
|.+++.+|.....+ ..++..|.+|+++| +|.||+++.+. +.|.+.+.............+..|++|++|+++
T Consensus 89 i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 89 VVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGN------NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp EEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGG------TEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred EEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCC------CEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 99999998765543 24557899999999 78899999765 679998654433333333445689999999765
Q ss_pred CEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+||+++...++|.+++.++........ ...|.+|++ +.+++||++++..+.|.+++..+.
T Consensus 162 -~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~------d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 162 -NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV------DEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp -CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEE------CTTCCEEEEETTTSCEEEECTTCS
T ss_pred -CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEE------CCCCCEEEEECCCCcEEEEcCCCC
Confidence 599999989999999998876544333 588999999 345699999999999999997654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-13 Score=151.08 Aligned_cols=281 Identities=15% Similarity=0.180 Sum_probs=196.3
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEE
Q psy5806 822 LNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYK 900 (1332)
Q Consensus 822 ~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~ 900 (1332)
.....|++|++|+. |.||+++... ..|.+.+.+|......... ...|.++++|..+ +||+++...+.|..+
T Consensus 12 ~~~~~~~~i~~d~~-g~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 12 NQDTGPYGITVSDK-GKVWITQHKA-----NMISCINLDGKITEYPLPTPDAKVMCLTISSDG--EVWFTENAANKIGRI 83 (299)
T ss_dssp SSSCCEEEEEECTT-SCEEEEETTT-----TEEEEECTTCCEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEE
T ss_pred CcCCCccceEECCC-CCEEEEecCC-----CcEEEEcCCCCeEEecCCcccCceeeEEECCCC--CEEEeCCCCCeEEEE
Confidence 34568999999987 8999988643 3688888885433322222 5678999999865 899999888899999
Q ss_pred ccCCCceeEEec-cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCC
Q psy5806 901 TLATGRAKRAYA-VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGG 978 (1332)
Q Consensus 901 ~~dG~~~~~l~~-~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGg 978 (1332)
+.+|........ ....|.+|++. ++.||+++...+.|.+.+. +++
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-------------------------------- 130 (299)
T 2z2n_A 84 TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-------------------------------- 130 (299)
T ss_dssp CTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--------------------------------
T ss_pred CCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC--------------------------------
Confidence 988654332222 45688999988 5688888877777765332 110
Q ss_pred CccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcE
Q psy5806 979 CSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNL 1058 (1332)
Q Consensus 979 CshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~ 1058 (1332)
+..+.+. .....+.++++++.+ +
T Consensus 131 ---------------------------------------------~~~~~~~-----------~~~~~~~~i~~~~~g-~ 153 (299)
T 2z2n_A 131 ---------------------------------------------IREYELP-----------NKGSYPSFITLGSDN-A 153 (299)
T ss_dssp ---------------------------------------------EEEEECS-----------STTCCEEEEEECTTS-C
T ss_pred ---------------------------------------------EEEecCC-----------CCCCCCceEEEcCCC-C
Confidence 0000000 011236778888654 7
Q ss_pred EEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEE
Q psy5806 1059 IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIA 1137 (1332)
Q Consensus 1059 lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~ia 1137 (1332)
||+++...+.|++++. ++.............|.+|++|.. ++||+++...+.|.+++.+|+.... +......|.+|+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 231 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAIT 231 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEE
Confidence 9999877888999986 343332222334567999999964 6799999888899999997775544 333557899999
Q ss_pred EcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1138 vdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
+|+ .|.||+++.+. ..|.+.+.+|......+......|.+|++ .+++||+++. .+.|.+++.+..
T Consensus 232 ~~~-~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 232 AGA-GIDLWFTEWGA------NKIGRLTSNNIIEEYPIQIKSAEPHGICF--DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ECS-TTCEEEEETTT------TEEEEEETTTEEEEEECSSSSCCEEEEEE--CSSCEEEEET-TTEEEEEEEC--
T ss_pred ECC-CCCEEEeccCC------ceEEEECCCCceEEEeCCCCCCccceEEe--cCCCEEEEec-CCcEEEEEcCcc
Confidence 999 58899998665 67999999774333323344578999999 6788999986 678999887643
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-13 Score=158.91 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=128.1
Q ss_pred ccceEEEEEEccCCeEEEEcCCCc------------------------eEEEEEec-CcceEEEEeCCCCCCccEEEecc
Q psy5806 466 VKSVVAIAWESANDSLYWADVENG------------------------EINRAHIN-GTFQYNVIRHNTKKPAGVAIDWR 520 (1332)
Q Consensus 466 ~~~~~~i~~d~~~~~lywsD~~~~------------------------~I~r~~~~-g~~~~~v~~~~~~~p~glAvDw~ 520 (1332)
+..+.+|++|+ +++||+++..++ .|++.+.+ |.-........+..|.|||+|.
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~- 100 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT- 100 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence 45678999997 589999987663 57777765 4322222223456899999997
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCC--cEEEE--------eCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEE
Q psy5806 521 TNKLYWTESEYNWIEVSNLDGTY--PTLLF--------WQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHI 590 (1332)
Q Consensus 521 ~~~lYw~d~~~~~I~v~~l~g~~--~~~l~--------~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~ 590 (1332)
.++||+++...++|.+.+.+|.. ...+- ...+..|.+||++|..|.||++|.....+|.+...+|.....
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~ 180 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ 180 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence 55699999999999999999873 33332 234678999999998899999995336899999999987666
Q ss_pred EEe---------CCCCCceeeEEeccCCeEEEEeCCCCeEEEEecC-CCceEE
Q psy5806 591 LAS---------DSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLD-GTRKQT 633 (1332)
Q Consensus 591 l~~---------~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~d-G~~~~~ 633 (1332)
+.. ..+..|.||++|+.+++||++|...++|...+.+ |...+.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 542 2456799999999889999999999999999988 664443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=160.54 Aligned_cols=217 Identities=13% Similarity=0.180 Sum_probs=160.4
Q ss_pred cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecC
Q psy5806 1021 FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVA 1100 (1332)
Q Consensus 1021 ~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~ 1100 (1332)
+. |..++..... ....+......|.+|++++.++ ||+++. .+.|++++.+ +.....+...+...|.+|++|. .
T Consensus 46 ~~-i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~-~~~~~~~~~~~~~~p~~i~~~~-~ 118 (270)
T 1rwi_B 46 GR-VVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAG-SNNQTVLPFDGLNYPEGLAVDT-Q 118 (270)
T ss_dssp CE-EEEECC-------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTT-CSCCEECCCCSCSSEEEEEECT-T
T ss_pred Cc-EEEecCCCcc--cceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCC-CceEeeeecCCcCCCcceEECC-C
Confidence 44 6666543221 1222334456788999998654 999997 8899999866 4433333323456899999997 5
Q ss_pred CeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC
Q psy5806 1101 NNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL 1179 (1332)
Q Consensus 1101 ~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l 1179 (1332)
++||+++...+.|.+++........ ...++..|.+|+++| .|.||+++.+. ..|.+.+.++..........+
T Consensus 119 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~ 191 (270)
T 1rwi_B 119 GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDN------NRVVKLEAESNNQVVLPFTDI 191 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGG------TEEEEECTTTCCEEECCCSSC
T ss_pred CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCC------CEEEEEecCCCceEeecccCC
Confidence 6799999888899888654333333 334567899999999 67899999865 689999999877655444456
Q ss_pred CCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1180 AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1180 ~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
..|.+|++|.++ +||+++...++|.+++.+|.....+.. ...|.+|++ +.++.||++++.+++|.++++..
T Consensus 192 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~------~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 192 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV------DSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp CSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE------CTTCCEEEEEGGGTEEEEECCCG
T ss_pred CCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE------CCCCCEEEEECCCCEEEEEcCCC
Confidence 789999999765 999999999999999999876544433 578999999 34568999999999999998764
Q ss_pred C
Q psy5806 1258 D 1258 (1332)
Q Consensus 1258 g 1258 (1332)
.
T Consensus 265 ~ 265 (270)
T 1rwi_B 265 H 265 (270)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-13 Score=153.77 Aligned_cols=217 Identities=11% Similarity=0.115 Sum_probs=160.2
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
..-+.+..|++.++.|||+|...+.|+++++.++ ....+ .....|.+|+++..++ ||++. .+.|.++++++...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-~~~~~--~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-QVQRV--TMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEE--ECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCC-cEEEE--eCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence 3446899999999999999999999999997733 22222 2235799999997655 88876 45888888874443
Q ss_pred EEEec-----CCCCceEEEEcCCCcEEEEEecCCCC-----CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1124 KILVN-----DLMEPLAIAVYPRRGLLFYSHWGLYD-----NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1124 ~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~-----~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+.+.. ....|++|++|| .|.||+++.+... ......|++++.+|.... + ...+..|+||+++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCCCCE
Confidence 33221 235689999999 6889998754310 013468999998875433 3 335788999999999999
Q ss_pred EEEEEcCCCeEEEEecC---CC--ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceE
Q psy5806 1194 LFWADSTNKRIEYCDFF---GR--SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDV 1264 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~d---G~--~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~ 1264 (1332)
|||++...++|.+++++ |. +++++.. ...|.||++ +.+++||++++..++|.++++.+| +..
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~------d~~G~lwva~~~~~~v~~~d~~tG---~~~ 233 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI------DAEGKLWVACYNGGRVIRLDPVTG---KRL 233 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE------BTTSCEEEEEETTTEEEEECTTTC---CEE
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE------CCCCCEEEEEcCCCEEEEEcCCCc---eEE
Confidence 99999999999999975 32 2445544 368999999 556899999999999999999888 555
Q ss_pred EEEecCCCCeeeEE
Q psy5806 1265 HLIRSNQEDFLNIK 1278 (1332)
Q Consensus 1265 ~~~~~~~~~~~~i~ 1278 (1332)
..+......+..+.
T Consensus 234 ~~i~~p~~~~t~~~ 247 (297)
T 3g4e_A 234 QTVKLPVDKTTSCC 247 (297)
T ss_dssp EEEECSSSBEEEEE
T ss_pred EEEECCCCCceEEE
Confidence 55655555565554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-12 Score=149.26 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=148.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-----CCceeeEEEecCCeEEEEcCC-CceEEEEeeC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-----TIRDNFVIDWVANNIYYIDSQ-MHTINVARSD 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-----~~p~glAvDw~~~~LY~td~~-~~~I~v~~ld 1119 (1332)
.|.+|++++.+ +||+++...+.|.++++.++.-...+. .+. ..|.+|+++ +++||+++.+ .+.|.++++.
T Consensus 85 ~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 85 SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETT
T ss_pred CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECC
Confidence 46788887665 899999778999999977443222222 221 179999995 9999999984 7899999987
Q ss_pred -CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCC----CCcEEEEecCCCceEEEEecC-CCCcceEEEecCCCE
Q psy5806 1120 -GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSP----TTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1120 -G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~----~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~~~~ 1193 (1332)
++....+..+ ..|.+|+++| .|.||++..+.+.+.+ ...|++++.........+... -..|++|++++++++
T Consensus 161 t~~~~~~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 161 TDKVVDELTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp TTEEEEEEECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred CCeEEEEEEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 4444445433 5799999999 6889999876421111 267999998755443333321 247999999999999
Q ss_pred EEEEEcCCCeEEEEecCCCce--EEEEe--ecccceEEEecCCccccccEEEEEE----CCCCEEEEEEecCCCCcceEE
Q psy5806 1194 LFWADSTNKRIEYCDFFGRSR--KIVIS--KVAPYGLSVRQSPGKAFIVELYWTD----WEAMSVVIAREKSDTGQWDVH 1265 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~~--~~~~~--~~~P~glav~~~~~~~~~~~lYwtd----~~~~~V~~~~~~~g~~~~~~~ 1265 (1332)
||+++. .|.++|.+.... ..++. ...|.+|++ ++.+++||+++ +.+++|.+++.. | +.+.
T Consensus 239 lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v-----dp~~g~lyva~~~~y~~~~~V~v~d~~-g---~~~~ 306 (328)
T 3dsm_A 239 LYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTV-----NPNNGEVYVADAIDYQQQGIVYRYSPQ-G---KLID 306 (328)
T ss_dssp EEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEE-----CTTTCCEEEEECTTSSSEEEEEEECTT-C---CEEE
T ss_pred EEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEE-----cCCCCeEEEEcccccccCCEEEEECCC-C---CEEE
Confidence 999986 899999975432 12222 478999999 44589999999 889999999987 6 4444
Q ss_pred EEe
Q psy5806 1266 LIR 1268 (1332)
Q Consensus 1266 ~~~ 1268 (1332)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=148.72 Aligned_cols=198 Identities=14% Similarity=0.180 Sum_probs=154.7
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-----CCCCceeeEEEecCCeEEEEcCC-CceEEEE
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-----NDTIRDNFVIDWVANNIYYIDSQ-MHTINVA 1116 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-----~~~~p~glAvDw~~~~LY~td~~-~~~I~v~ 1116 (1332)
.+..|.+|++++.+ .||+++...+.|.+++.+ +.....+... ....|.+||++...++||+++.. .+.|.++
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 34578999999875 699999889999999866 4433333221 13579999997678999999975 7789999
Q ss_pred eeCCceEEEEe-cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-cCCCCcceEEEecCCCEE
Q psy5806 1117 RSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-EDLAFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1117 ~ldG~~~~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-~~l~~p~glaiD~~~~~L 1194 (1332)
+.+|+....+. .....|++|+++| .|.||+++... .+|.+.+.+|.....+.. ..+..|++|++|++ ++|
T Consensus 106 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~-g~l 177 (286)
T 1q7f_A 106 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK-QEI 177 (286)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCSSEEEEEECSS-SEE
T ss_pred CCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC-CCE
Confidence 98888766543 3456899999999 67899998765 689999998876555432 34678999999975 679
Q ss_pred EEEEcCCCeEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCC-EEEEEEec
Q psy5806 1195 FWADSTNKRIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAM-SVVIAREK 1256 (1332)
Q Consensus 1195 Y~~d~~~~~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~-~V~~~~~~ 1256 (1332)
|+++...++|.+++.+|.....+.. ...|.+|++ +.+++||++++..+ .|.++++.
T Consensus 178 ~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~------d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGI------NSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEE------CTTCCEEEEECSSSCEEEEECTT
T ss_pred EEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEE------CCCCCEEEEeCCCCEEEEEECCC
Confidence 9999999999999998875544433 368999999 44679999999886 99999854
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=155.48 Aligned_cols=202 Identities=14% Similarity=0.196 Sum_probs=148.9
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-------------------CCCCceeeEEEecCCeEE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-------------------NDTIRDNFVIDWVANNIY 1104 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-------------------~~~~p~glAvDw~~~~LY 1104 (1332)
+..|.++++|+. +.+||++...+.|++++.. +...+.+... ....|.|||+|...++||
T Consensus 18 ~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 18 SYAPNSFTFDST-NKGFYTSVQDGRVIKYEGP-NSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SSCCCCEECCTT-CSSEEEECTTSEEEEECCT-TTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred cCCceEEEEcCC-CCEEEEEcCCCeEEEECCC-CCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 456889999986 5678888889999999865 3223332211 124799999997678999
Q ss_pred EEcCCCceEEEEeeCCceEEEEec-----CCCCceEEEEcCCCcEEEEEecCCC-C----------CCCCCcEEEEecCC
Q psy5806 1105 YIDSQMHTINVARSDGQHKKILVN-----DLMEPLAIAVYPRRGLLFYSHWGLY-D----------NSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1105 ~td~~~~~I~v~~ldG~~~~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~-~----------~~~~~~I~r~~ldG 1168 (1332)
+++... .|.+++.++...+.+.. .+..|.+|++||..|.||+++.+.. . ....++|++.+.++
T Consensus 96 v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 IVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 999764 47778877544333321 3467999999996689999996520 0 01236799999876
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCC---ceEEEEe-ecccceEEEecCCccccccEEEEEE
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR---SRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~---~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
.....+.. .+..|+||+++++++.||++|...++|.+++++|. .++++.. .. |.+|++ +.++.||+++
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~------d~~G~l~va~ 246 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR------NADGHFWVSS 246 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE------CTTSCEEEEE
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE------CCCCCEEEEe
Confidence 66555443 57899999999999999999999999999999873 3444444 33 999999 5567899999
Q ss_pred CC----------CCEEEEEEec
Q psy5806 1245 WE----------AMSVVIAREK 1256 (1332)
Q Consensus 1245 ~~----------~~~V~~~~~~ 1256 (1332)
+. .+.|.++++.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT
T ss_pred cCcccccccCCCccEEEEECCC
Confidence 87 5789999874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-12 Score=145.06 Aligned_cols=195 Identities=11% Similarity=0.101 Sum_probs=150.7
Q ss_pred cceEEEEEeCCCcEEEEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
..|.+++++..+++||+++.. .+.|++++.+ |.....+.......|.+||+|.. ++||+++...++|.+++.+|+..
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~~ 154 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNK-GRIIVVECKVMRVIIFDQNGNVL 154 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEEEEecCccCCCceEEEEeCC-CCEEEEECCCCEEEEEcCCCCEE
Confidence 457899997777899999964 7889999844 54443333234468999999974 57999999889999999988866
Q ss_pred EEEe--cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcceEEEecCCCEEEEEEcC
Q psy5806 1124 KILV--NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1124 ~~~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
..+. ..+..|++|+++| .|.||+++... .+|.+.+.+|.....+...+ +..|.+|++|++ ++||+++..
T Consensus 155 ~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~-G~l~v~~~~ 226 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVND-KQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GEILIADNH 226 (286)
T ss_dssp EEEECTTTCSSEEEEEECS-SSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSCSEEEEEECTT-CCEEEEECS
T ss_pred EEeCCCCccCCcEEEEECC-CCCEEEEECCC------CEEEEEcCCCCEEEEEccCCccCCCcEEEECCC-CCEEEEeCC
Confidence 6543 3557899999999 68899999765 78999999887655443322 578999999975 589999988
Q ss_pred CC-eEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1201 NK-RIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1201 ~~-~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
.+ +|..++.+|.....+.. ...|.+|++ +.+++||+++. .++|...+..
T Consensus 227 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~------~~~g~l~vs~~-~~~v~v~~~~ 279 (286)
T 1q7f_A 227 NNFNLTIFTQDGQLISALESKVKHAQCFDVAL------MDDGSVVLASK-DYRLYIYRYV 279 (286)
T ss_dssp SSCEEEEECTTSCEEEEEEESSCCSCEEEEEE------ETTTEEEEEET-TTEEEEEECS
T ss_pred CCEEEEEECCCCCEEEEEcccCCCCcceeEEE------CCCCcEEEECC-CCeEEEEEcc
Confidence 86 99999998876555544 446899999 34678999985 6888877653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=149.37 Aligned_cols=192 Identities=9% Similarity=-0.003 Sum_probs=142.3
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCc--eEEEEee-CCc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMH--TINVARS-DGQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~--~I~v~~l-dG~ 1121 (1332)
..|.++++++. ++|||+|...++|++++.+ +. ...+. ...+.|.|||+|.. ++||+++...+ +|.+++. +|+
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~-g~-~~~~~-~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPD-GN-QQIHA-TVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTT-CC-EEEEE-ECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCC-Cc-eEEEE-eCCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence 45789999985 5699999999999999866 43 32333 23457999999965 45999996643 4666664 455
Q ss_pred eEEEEe-cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE-E---------ecCCCCcceEEEecC
Q psy5806 1122 HKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL-V---------EEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1122 ~~~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l-~---------~~~l~~p~glaiD~~ 1190 (1332)
...+.. .....|.++++.+ .+.+|+++... ++|++++.++....+. . ...+..|+|| +++
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLS-DTQYLTADSYR------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EEEEEECTTCSCEEEEEESS-SSEEEEEETTT------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EEEEEeCCCccccCcccccC-CCcEEEEECCC------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 443322 3445689999876 78899999755 6899999876432221 1 1245679998 666
Q ss_pred CCEEEEEEcCCCeEEEEecCC--C--ceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFG--R--SRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG--~--~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
++.||++|..+++|.++++++ . .++++.....|.+|++ +.+++||++++.+++|.++++.
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~v------d~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAF------DVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEE------BTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEE------CCCCCEEEEeCCCCeEEEECCC
Confidence 889999999999999999985 2 2444444678999999 4577899999999999999975
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-11 Score=140.16 Aligned_cols=252 Identities=13% Similarity=0.079 Sum_probs=171.6
Q ss_pred CCccceeEecCCCeEEEEeCCCCeEEEEeCC-CCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC
Q psy5806 782 NRTESIAVDAIGRKIYWTDMNAQTIMVSDID-GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860 (1332)
Q Consensus 782 ~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld-G~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d 860 (1332)
..|.+|++| +++||++....++|.+.++. ++....+ .....|++|++++. |+||+++... .+|.+.+..
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i--~~~~~p~~i~~~~~-g~lyv~~~~~-----~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI--TGFTSPRYIHFLSD-EKAYVTQIWD-----YRIFIINPK 113 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE--ECCSSEEEEEEEET-TEEEEEEBSC-----SEEEEEETT
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc--CCCCCCcEEEEeCC-CeEEEEECCC-----CeEEEEECC
Confidence 357889986 68899999988999999986 5544444 34578999999877 6999998432 368777665
Q ss_pred CCCcEEEecccc------cCceeEEeCCCCCeEEEEeCC-CCeEEEEccCCCceeEEeccCCcceEEEEeC-CEEEEEeC
Q psy5806 861 GTNRAVFETEVI------WPSCLAIDYSDNPKLYWVDTS-KHTIEYKTLATGRAKRAYAVQSHPYTLTVLD-YYVYWTDV 932 (1332)
Q Consensus 861 G~~~~~l~~~l~------~P~gl~iD~~~~~~lYw~d~~-~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~-~~iywtD~ 932 (1332)
.......+.... .|.+|+++ + ++||+++.+ .+.|..+|+..............|.++++.. +.+|.+..
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~~--~-~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQY--G-KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEEE--T-TEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBC
T ss_pred CCeEEEEEEcCCccccCCCcceEEEE--C-CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEEC
Confidence 332221122222 89999994 5 799999974 7899999987544333333456788888773 56666654
Q ss_pred CC----------CEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEcc
Q psy5806 933 QH----------SKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002 (1332)
Q Consensus 933 ~~----------~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~ 1002 (1332)
.. ++|++++..+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t---------------------------------------------------------- 212 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAET---------------------------------------------------------- 212 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTT----------------------------------------------------------
T ss_pred CCccCCccccCCceEEEEECCC----------------------------------------------------------
Confidence 32 2222211100
Q ss_pred CCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce-
Q psy5806 1003 DRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK- 1081 (1332)
Q Consensus 1003 d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~- 1081 (1332)
.+++..+. ++....|.+|++++.+++||+++. .|+++++.++.-..
T Consensus 213 ------------------~~v~~~~~------------~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 213 ------------------FTVEKQFK------------FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR 259 (328)
T ss_dssp ------------------TEEEEEEE------------CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS
T ss_pred ------------------CeEEEEEe------------cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee
Confidence 01011121 111235789999999999999985 89999987544321
Q ss_pred eEeecCCCCceeeEEEecCCeEEEEc----CCCceEEEEeeCCceEEEEecCCCCceEEEE
Q psy5806 1082 PIPLMNDTIRDNFVIDWVANNIYYID----SQMHTINVARSDGQHKKILVNDLMEPLAIAV 1138 (1332)
Q Consensus 1082 ~i~~~~~~~p~glAvDw~~~~LY~td----~~~~~I~v~~ldG~~~~~~~~~~~~P~~iav 1138 (1332)
.++..+...|.|||+|+.+++||+++ ...+.|.+++.+|+....+..+ ..|.+|+.
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEE-ESEEEEEE
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEec-cCcceEEE
Confidence 12222246899999998899999999 7788999999998877766545 57888886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-10 Score=132.36 Aligned_cols=280 Identities=10% Similarity=0.024 Sum_probs=194.6
Q ss_pred cccCceeEEeCCCCCeEEEEeCC------CCeEEEEccCCCceeEEeccCCcceEEEEe--CCEEEEEeCCCCEEEEEEC
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTS------KHTIEYKTLATGRAKRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~------~~~I~~~~~dG~~~~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~ 942 (1332)
...|.+++++.++ ++||++... .+.|...+...............|.++++. ++++|+++...+.|...+.
T Consensus 40 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4457899999999 999999976 568999988755443333334557777776 4679999888888776554
Q ss_pred CCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecc
Q psy5806 943 YDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFG 1022 (1332)
Q Consensus 943 ~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~ 1022 (1332)
.+++.+.
T Consensus 119 ~~~~~~~------------------------------------------------------------------------- 125 (353)
T 3vgz_A 119 KTGEVKG------------------------------------------------------------------------- 125 (353)
T ss_dssp TTCCEEE-------------------------------------------------------------------------
T ss_pred CCCeeEE-------------------------------------------------------------------------
Confidence 4332111
Q ss_pred eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCC
Q psy5806 1023 VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN 1101 (1332)
Q Consensus 1023 ~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~ 1101 (1332)
.+.+........ .....+.++++++.+++||+++. ..+.|+.+++.++.....+ ......|.++++++.++
T Consensus 126 ---~~~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 126 ---RLVLDDRKRTEE----VRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI-QNTGKMSTGLALDSEGK 197 (353)
T ss_dssp ---EEESCCCCCCSS----CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE-CCCCTTCCCCEEETTTT
T ss_pred ---EEecCCCccccc----cCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe-cCCCCccceEEECCCCC
Confidence 111100000000 00113678899999999999984 4678999997743322222 11234699999999999
Q ss_pred eEEEEcCCCceEEEEeeCC-ceEEEEec----CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe
Q psy5806 1102 NIYYIDSQMHTINVARSDG-QHKKILVN----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE 1176 (1332)
Q Consensus 1102 ~LY~td~~~~~I~v~~ldG-~~~~~~~~----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~ 1176 (1332)
.||+++. .+.|.++++.. +....+.. ....|.+|+++|..++||+++.+. +.|...++........+.
T Consensus 198 ~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 198 RLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA------AEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS------SEEEEEETTTCCEEEEEE
T ss_pred EEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEE
Confidence 9999987 56888888864 33333332 234578899999888999998765 689999996655444444
Q ss_pred cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC
Q psy5806 1177 EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
+..|.++++++++++||+++...+.|..+|.........+. ...|.++++ ++.+.+||++...
T Consensus 271 --~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 271 --APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLAL-----SADGKTLYVSVKQ 334 (353)
T ss_dssp --CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEE-----CTTSCEEEEEEEC
T ss_pred --cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEE-----cCCCCEEEEEEcc
Confidence 45678999999999999999989999999997554443444 778999999 4567789999864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-12 Score=143.77 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=149.2
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
+...+.++.|++.++.|||++...+.|++++.+ |. . ..+......|.+|++|+. ++||+++...++|.+++.+|+.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~~~~~~~~~~gl~~d~d-G~l~v~~~~~~~v~~~~~~g~~ 118 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DVLLDATAFTNGNAVDAQ-QRLVHCEHGRRAITRSDADGQA 118 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EEEEESCSCEEEEEECTT-SCEEEEETTTTEEEEECTTSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EEEeCCCCccceeeECCC-CCEEEEECCCCEEEEECCCCCE
Confidence 445578999999999999999999999999864 43 2 333345568999999975 5699999888899999998875
Q ss_pred EEEEe--c--CCCCceEEEEcCCCcEEEEEecC--CCC---------CCCCCcEEEEecCCCceEEEEecCCCCcceEEE
Q psy5806 1123 KKILV--N--DLMEPLAIAVYPRRGLLFYSHWG--LYD---------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAI 1187 (1332)
Q Consensus 1123 ~~~~~--~--~~~~P~~iavdp~~g~Lywtd~~--~~~---------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glai 1187 (1332)
..... . .+..|++|+++| .|.||+||.. ... ......|++++.++...+.+. .+..|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF 195 (305)
T ss_dssp EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence 44421 1 245789999999 7899998741 100 012357999998544444443 6789999999
Q ss_pred ecCCCEEEEEEcCC-----CeEEEEecCCCc---eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1188 DFKQRRLFWADSTN-----KRIEYCDFFGRS---RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~-----~~I~~~d~dG~~---~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+++++.||+++... ++|.++++++.. ++++.. ...|.||++ +.+++||++.. +.|+++++.
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~------d~~G~lwv~~~--~gv~~~~~~ 266 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV------DRGGWLWSSSG--TGVCVFDSD 266 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE------CTTSCEEECCS--SEEEEECTT
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE------CCCCCEEEecC--CcEEEECCC
Confidence 99999999999874 799999998642 334443 567999999 56778998883 569999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=140.17 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=157.8
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee-CCc
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS-DGQ 1121 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG~ 1121 (1332)
+...+.+++|++.++.|||++...+.|++++.+++ ... +......|.+|++|. .++||+++...+.|.+++. +|+
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~ 101 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-EMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGE 101 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-EESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-EECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCc
Confidence 45568899999999999999999999999997733 333 334556899999996 5669999988889999998 676
Q ss_pred eEEEEe--c--CCCCceEEEEcCCCcEEEEEecC--CC---------CCCCCCcEEEEecCCCceEEEEecCCCCcceEE
Q psy5806 1122 HKKILV--N--DLMEPLAIAVYPRRGLLFYSHWG--LY---------DNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186 (1332)
Q Consensus 1122 ~~~~~~--~--~~~~P~~iavdp~~g~Lywtd~~--~~---------~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~gla 1186 (1332)
....+. . ....|++|+++| .|.||+|+.. .. .+.....|++++.+|.. .. +...+..|+||+
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~-~~~~~~~~~gi~ 178 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SA-PIRDRVKPNGLA 178 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EE-EECCCSSEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EE-eecCCCCCccEE
Confidence 554421 1 245789999999 7899998741 10 00113589999988543 33 344678899999
Q ss_pred EecCCCEEEEEEcCCCeEEEEecC--CCc---eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1187 IDFKQRRLFWADSTNKRIEYCDFF--GRS---RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~~~~I~~~d~d--G~~---~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
++++++.| |++...++|.+++++ |.- ++++ . ...|.+|++ +.+++||++. .+.|.++++. |
T Consensus 179 ~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~------d~~G~l~v~~--~~~v~~~~~~-g- 246 (296)
T 3e5z_A 179 FLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRV------DAGGLIWASA--GDGVHVLTPD-G- 246 (296)
T ss_dssp ECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEE------BTTSCEEEEE--TTEEEEECTT-S-
T ss_pred ECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEE------CCCCCEEEEc--CCeEEEECCC-C-
Confidence 99998888 999999999999985 433 3444 4 678999999 5578899999 7899999986 4
Q ss_pred CcceEEEEecCCCCeeeE
Q psy5806 1260 GQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1260 ~~~~~~~~~~~~~~~~~i 1277 (1332)
.....+..... +..+
T Consensus 247 --~~~~~~~~~~~-~~~~ 261 (296)
T 3e5z_A 247 --DELGRVLTPQT-TSNL 261 (296)
T ss_dssp --CEEEEEECSSC-CCEE
T ss_pred --CEEEEEECCCC-ceeE
Confidence 34444444333 5444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-12 Score=145.53 Aligned_cols=196 Identities=15% Similarity=0.133 Sum_probs=144.8
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec----CCCCceeeEEEecCCeEEEEcCCC----------
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM----NDTIRDNFVIDWVANNIYYIDSQM---------- 1110 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~----~~~~p~glAvDw~~~~LY~td~~~---------- 1110 (1332)
..|.+|++++.+++||++|... .|.+++.+ +...+++... ....|.+|++|...++||++|...
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~-~i~~~d~~-~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYY-HLSVVGSE-GGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTT-EEEEECTT-CEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCC-CEEEEeCC-CCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 3578999998678999999664 48888865 2223333321 234699999996467999998652
Q ss_pred -------ceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC---ceEEEEecCCC
Q psy5806 1111 -------HTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS---YRTVLVEEDLA 1180 (1332)
Q Consensus 1111 -------~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~---~~~~l~~~~l~ 1180 (1332)
++|.+++.++.....+..++..|.+|+++|....||+++.+. .+|++++++|. ..+.+.. ...
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~------~~I~~~~~~~~~~~~~~~~~~-~~g 230 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS------HQIVKYWLEGPKKGTAEVLVK-IPN 230 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG------TEEEEEESSSTTTTCEEEEEE-CSS
T ss_pred hcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC------CeEEEEECCCCcCCccceEEe-CCC
Confidence 568778777555555555678899999999777899999876 78999999873 3334433 223
Q ss_pred CcceEEEecCCCEEEEEEcC----------CCeEEEEecCCCceEEEEe-----ecccceEEEecCCccccccEEEEEEC
Q psy5806 1181 FPNELAIDFKQRRLFWADST----------NKRIEYCDFFGRSRKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~----------~~~I~~~d~dG~~~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
|.||++|.++ +||+++.. .++|.++|.+|...+.+.. ...|.+++. .+++||+++.
T Consensus 231 -P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-------~~g~L~v~~~ 301 (322)
T 2fp8_A 231 -PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-------HDGLLYIGTL 301 (322)
T ss_dssp -EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-------ETTEEEEECS
T ss_pred -CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-------eCCEEEEeec
Confidence 9999999764 69999876 5789999999876554443 256888888 7899999999
Q ss_pred CCCEEEEEEecCC
Q psy5806 1246 EAMSVVIAREKSD 1258 (1332)
Q Consensus 1246 ~~~~V~~~~~~~g 1258 (1332)
..+.|.++++...
T Consensus 302 ~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 302 FHGSVGILVYDKK 314 (322)
T ss_dssp SCSEEEEEEC---
T ss_pred CCCceEEEecccc
Confidence 9999999997643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-09 Score=124.20 Aligned_cols=279 Identities=16% Similarity=0.152 Sum_probs=194.6
Q ss_pred cceEEEEEEccCCeEEEEcCC------CceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy5806 467 KSVVAIAWESANDSLYWADVE------NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLD 540 (1332)
Q Consensus 467 ~~~~~i~~d~~~~~lywsD~~------~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~ 540 (1332)
..+.+++|++..++||+++.. .+.|+.+++........+.. -..|.++++++.++.||+++...+.|.+.++.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 457789999988999999865 66888887765443333332 24699999999999999999988999999986
Q ss_pred CCCc-EEEEeCCCC--------CceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeE
Q psy5806 541 GTYP-TLLFWQNLS--------EPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611 (1332)
Q Consensus 541 g~~~-~~l~~~~~~--------~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rL 611 (1332)
+... ..+...... .|++++++|..++||.++++...+|...+++.......+...-..|.++++++.+++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 5433 333322111 3899999999999999998767789888887655544444233569999999999999
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCC
Q psy5806 612 YWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPA 691 (1332)
Q Consensus 612 Yw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~ 691 (1332)
|.++. .+.|..+++......
T Consensus 200 ~~~~~-~~~i~~~d~~~~~~~----------------------------------------------------------- 219 (353)
T 3vgz_A 200 YTTNA-DGELITIDTADNKIL----------------------------------------------------------- 219 (353)
T ss_dssp EEECT-TSEEEEEETTTTEEE-----------------------------------------------------------
T ss_pred EEEcC-CCeEEEEECCCCeEE-----------------------------------------------------------
Confidence 98875 345544443221100
Q ss_pred CccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCC
Q psy5806 692 GNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT 771 (1332)
Q Consensus 692 g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~ 771 (1332)
..+.+.... ....+.++++++.++++|+++...+.|..+++...
T Consensus 220 ---------------------------~~~~~~~~~---------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 220 ---------------------------SRKKLLDDG---------KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp ---------------------------EEEECCCSS---------SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ---------------------------EEEEcCCCC---------CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 000000000 01124567788888889999888888998887544
Q ss_pred CceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecc
Q psy5806 772 GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWS 845 (1332)
Q Consensus 772 ~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g 845 (1332)
.....+. ...+.+++++..++.||+++...+.|.+.++........+.. ...|.+++++|...+||++...
T Consensus 264 ~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 264 NILAKVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CEEEEEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred cEEEEEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 4333333 345789999999999999999899999999864333222322 2479999999997789998754
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=144.23 Aligned_cols=203 Identities=16% Similarity=0.179 Sum_probs=145.5
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe-----ecCCCCceeeEEEec---CCeEEEEcCCC---
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP-----LMNDTIRDNFVIDWV---ANNIYYIDSQM--- 1110 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~-----~~~~~~p~glAvDw~---~~~LY~td~~~--- 1110 (1332)
.++..|.+|++++.+ +||+++.. ++|++++ + ++. +.+. ..+...|.|||+++. ++.||+++...
T Consensus 28 ~~l~~P~~ia~~pdG-~l~V~e~~-g~I~~i~-~-g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~ 102 (352)
T 2ism_A 28 GGLEVPWALAFLPDG-GMLIAERP-GRIRLFR-E-GRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG 102 (352)
T ss_dssp CCCSCEEEEEECTTS-CEEEEETT-TEEEEEE-T-TEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred CCCCCceEEEEcCCC-eEEEEeCC-CeEEEEE-C-CCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence 456789999999876 59999965 9999998 4 542 2221 234568999999987 78999998753
Q ss_pred --ceEEEEeeCCc---eEEEEec-------CCCCceEEEEcCCCcEEEEEecCCCC-------CCCCCcEEEEecCCCc-
Q psy5806 1111 --HTINVARSDGQ---HKKILVN-------DLMEPLAIAVYPRRGLLFYSHWGLYD-------NSPTTKIEKVYLDGSY- 1170 (1332)
Q Consensus 1111 --~~I~v~~ldG~---~~~~~~~-------~~~~P~~iavdp~~g~Lywtd~~~~~-------~~~~~~I~r~~ldG~~- 1170 (1332)
++|.++++++. ..+++.. ....|.+|+++| .|+||+++..... ....++|.|++.+|+.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p 181 (352)
T 2ism_A 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA 181 (352)
T ss_dssp SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence 78888888753 2222211 234689999999 7899999732200 1234689999999831
Q ss_pred -----------eEEEEecCCCCcceEEEecCCCEEEEEEcCCCe--------EEEEecCCCc---------------eEE
Q psy5806 1171 -----------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR--------IEYCDFFGRS---------------RKI 1216 (1332)
Q Consensus 1171 -----------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~--------I~~~d~dG~~---------------~~~ 1216 (1332)
...++..++..|.||++|+++++||++|...+. |..+.. |.+ ...
T Consensus 182 ~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 182 PGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcCC
Confidence 223445578889999999988999999998776 555543 321 011
Q ss_pred EE--e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1217 VI--S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1217 ~~--~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+. . ...|.||++ +++.||++++..++|.+++..+.
T Consensus 261 ~~~~~~~~ap~G~~~-------~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 261 LYFWPQGFPPGNLAF-------FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp SEECTTCCCEEEEEE-------ETTEEEEEETTTTEEEEEEEEEE
T ss_pred eEecCCCCCCcceEE-------ECCEEEEEECCCCEEEEEEECCC
Confidence 11 2 457999999 99999999999999999998754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-09 Score=123.56 Aligned_cols=310 Identities=13% Similarity=0.118 Sum_probs=197.7
Q ss_pred CceEEEEecCCCceEEEecCCCCc-eEE-EeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCC---CCceEEEEecCC
Q psy5806 750 NEYIYWSDISEKTIERVRFDMTGR-ERL-VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID---GKNAKVLFWLNL 824 (1332)
Q Consensus 750 ~~~lYwsD~~~~~I~r~~~~g~~~-~~v-i~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld---G~~~~~l~~~~~ 824 (1332)
.+.+|+++...+.|+..+++.+.. +.+ .......|.++++++.++.||+++...+.|.+.+++ |+.+.+......
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 457888888888888888764332 222 122346799999999999999999887899998876 333322211222
Q ss_pred CCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec-CCCCcEEEe--cccccCceeEEeCCCCCeEEEEeCCCCeEEEEc
Q psy5806 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM-DGTNRAVFE--TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKT 901 (1332)
Q Consensus 825 ~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~-dG~~~~~l~--~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~ 901 (1332)
..|.+|+++|...+||++..... .|....+ +|.....+. .....|.+++++..+ +.||+++...+.|...+
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAG-----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTT-----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEecCCC-----eEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 47999999999778999886433 5776666 343222222 225568899999999 89999987778898888
Q ss_pred cCC-CceeEEe------ccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcc
Q psy5806 902 LAT-GRAKRAY------AVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNAC 972 (1332)
Q Consensus 902 ~dG-~~~~~l~------~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C 972 (1332)
++. .....+. .....|.++++. +.+||.++...+.|...+.. .. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~--------------------~~-~----- 211 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK--------------------DP-H----- 211 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS--------------------CT-T-----
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec--------------------CC-C-----
Confidence 865 3222211 123467777775 44677777666665532210 00 0
Q ss_pred cCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEE
Q psy5806 973 GSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDY 1052 (1332)
Q Consensus 973 ~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~ 1052 (1332)
| .+.. +..+...+.. ..+...+.+++|
T Consensus 212 ------------------------g---------------~~~~-------~~~~~~~~~~-------~~~~~~~~~i~~ 238 (343)
T 1ri6_A 212 ------------------------G---------------NIEC-------VQTLDMMPEN-------FSDTRWAADIHI 238 (343)
T ss_dssp ------------------------S---------------CCEE-------EEEEECSCTT-------CCSCCCEEEEEE
T ss_pred ------------------------C---------------cEEE-------EeeccccCcc-------ccccCCccceEE
Confidence 0 0000 0011100000 112335678999
Q ss_pred eCCCcEEEEEeCCCCeEEEEECCCCCCc-eeE-eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC---CceEEE--
Q psy5806 1053 HYSKNLIYFADMRSGNLRTFDMSDSTRI-KPI-PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD---GQHKKI-- 1125 (1332)
Q Consensus 1053 d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i-~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld---G~~~~~-- 1125 (1332)
++.++.||+++...+.|..++++..++. +.+ .......|.++++++.++.||+++...+.|.+++++ |+...+
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc
Confidence 9999999999988899999887632221 222 112234599999999999999999888899998776 333333
Q ss_pred EecCCCCceEEEEcCCCcEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~L 1145 (1332)
+..+ ..|.+|+++|..+.+
T Consensus 319 ~~~g-~~p~~i~~~~~~~~~ 337 (343)
T 1ri6_A 319 YAVG-QGPMWVVVNAHEGGS 337 (343)
T ss_dssp EECS-SSCCEEEEEEEC---
T ss_pred cccC-CCCeeEEEEcccCCc
Confidence 3333 689999999865543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-10 Score=124.75 Aligned_cols=205 Identities=11% Similarity=0.053 Sum_probs=149.5
Q ss_pred ccCCc-cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1040 PFPEY-MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1040 pi~~~-~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
|++++ .++.||+|++.+++||.+.-..+.|+++++. |.-...+...+...++|||++ -.+.+|+++...+++.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEc
Confidence 56665 5789999999999999876678999999987 665555544566799999999 45667788888889998887
Q ss_pred CCce--EEE--EecCC-CCc-----eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe--cCCCceEEEEe------cCCC
Q psy5806 1119 DGQH--KKI--LVNDL-MEP-----LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY--LDGSYRTVLVE------EDLA 1180 (1332)
Q Consensus 1119 dG~~--~~~--~~~~~-~~P-----~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~--ldG~~~~~l~~------~~l~ 1180 (1332)
+... ..+ +.-.+ ..| -|||+||..++||.+.... ...|++.+ +.+...+++-. ..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-----p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-----PIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-----SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-----CceEEEEcccccCCceeeecchhhccccccC
Confidence 6332 212 21121 234 8999999988999987654 23788887 22222233211 1356
Q ss_pred CcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE-e---------ecccceEEEecCCccccccEEEEEECCCCEE
Q psy5806 1181 FPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI-S---------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSV 1250 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~-~---------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V 1250 (1332)
.+.+|++|+.+++||+....++.|..+|.+|..+..+. . ...|.|||+ |.+|.||++... +.+
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~------d~~G~lyIvsE~-n~~ 246 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM------DASGNIYIVSEP-NRF 246 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE------CTTCCEEEEETT-TEE
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE------CCCCCEEEEcCC-ceE
Confidence 78999999999999999999999999999998433332 1 248999999 567789999754 699
Q ss_pred EEEEecCC
Q psy5806 1251 VIAREKSD 1258 (1332)
Q Consensus 1251 ~~~~~~~g 1258 (1332)
+++.|..+
T Consensus 247 y~f~~~~~ 254 (255)
T 3qqz_A 247 YRFTPQSS 254 (255)
T ss_dssp EEEEC---
T ss_pred EEEEecCC
Confidence 99987653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=132.63 Aligned_cols=212 Identities=11% Similarity=0.042 Sum_probs=145.0
Q ss_pred eEEEEe--ecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC--eEEEEECCCCCCceeEee-cCC
Q psy5806 1014 FLLYTS--RFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG--NLRTFDMSDSTRIKPIPL-MND 1088 (1332)
Q Consensus 1014 ~ll~~~--~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~--~I~~~~l~~g~~~~~i~~-~~~ 1088 (1332)
.|+++. ... |.+++.+.. .....+. ...|.+|++++.++ ||+++...+ .|.+++..+|. .+.+.. ...
T Consensus 44 ~lyv~d~~~~~-I~~~d~~g~--~~~~~~~--~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~-~~~~~~~~~~ 116 (306)
T 2p4o_A 44 TIFVTNHEVGE-IVSITPDGN--QQIHATV--EGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT-VETLLTLPDA 116 (306)
T ss_dssp CEEEEETTTTE-EEEECTTCC--EEEEEEC--SSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-EEEEEECTTC
T ss_pred CEEEEeCCCCe-EEEECCCCc--eEEEEeC--CCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-EEEEEeCCCc
Confidence 355554 345 777776532 1112222 24688999998765 999996543 58888865443 333332 234
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE--E---------ecCCCCceEEEEcCCCcEEEEEecCCCCCCC
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI--L---------VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~--~---------~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~ 1157 (1332)
..|.|+++ |.++++|++|...++|.+++.++...++ . ...+..|.+| +|..++||+++...
T Consensus 117 ~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~----- 188 (306)
T 2p4o_A 117 IFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK----- 188 (306)
T ss_dssp SCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT-----
T ss_pred cccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC-----
Confidence 56889886 5788999999888899888887532111 1 1245679998 67678999999876
Q ss_pred CCcEEEEecCC--C--ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEE-Ee--ecccceEEEec
Q psy5806 1158 TTKIEKVYLDG--S--YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV-IS--KVAPYGLSVRQ 1230 (1332)
Q Consensus 1158 ~~~I~r~~ldG--~--~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~-~~--~~~P~glav~~ 1230 (1332)
++|+++++++ . .+..+.. +..|.||++|.+ ++||+++...++|.+++.+|....+. +. ...|.++++-+
T Consensus 189 -~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 189 -MLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVE-GNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp -TEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTT-CCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred -CEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCC-CCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEec
Confidence 7999999985 2 2333332 468999999976 47999999999999999987643321 22 57899999900
Q ss_pred CCccccccEEEEEECC
Q psy5806 1231 SPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1231 ~~~~~~~~~lYwtd~~ 1246 (1332)
..+.+++||+++..
T Consensus 265 --~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 --TEGDCTAIYVVTNG 278 (306)
T ss_dssp --STTTTTEEEEEECT
T ss_pred --ccCCCCEEEEECCC
Confidence 00346899999974
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-10 Score=133.52 Aligned_cols=253 Identities=14% Similarity=0.075 Sum_probs=163.6
Q ss_pred cEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEE-----eCCCCCceeeEEecc---CCeEEEEe
Q psy5806 544 PTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILA-----SDSLKNPTGLAIDLE---NSRLYWAN 615 (1332)
Q Consensus 544 ~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~-----~~~l~~p~glaiD~~---~~rLYw~d 615 (1332)
+..++..++..|++|+++|. |.||+++.. .+|.+...+|. ..+. ......|.||++++. +++||+++
T Consensus 20 ~~~~va~~l~~P~~ia~~pd-G~l~V~e~~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLGG-GRYLVTERP--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEEEECSCSCEEEEEEEET-TEEEEEETT--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEEeCCCCCCeEEEEcCC-CeEEEEeCC--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 34445578999999999996 899999965 78998877776 3332 234578999999997 89999998
Q ss_pred CC---C----CeEEEEecCCCc-----eEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCC
Q psy5806 616 VG---L----KTIEFTNLDGTR-----KQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKD 683 (1332)
Q Consensus 616 ~~---~----~~I~~~~~dG~~-----~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~ 683 (1332)
.. . +.|.++++++.. .++++.
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~----------------------------------------------- 127 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLID----------------------------------------------- 127 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEE-----------------------------------------------
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEE-----------------------------------------------
Confidence 64 2 456666665441 111100
Q ss_pred CceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEe------
Q psy5806 684 GIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSD------ 757 (1332)
Q Consensus 684 ~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD------ 757 (1332)
.+ |......+..|.+++. ++||++.
T Consensus 128 ------------------------------------~~------------~~~~~h~~~~l~~~pD-G~Lyvt~G~~~~~ 158 (354)
T 3a9g_A 128 ------------------------------------GI------------PGAYIHNGGRIRFGPD-GMLYITTGDAADP 158 (354)
T ss_dssp ------------------------------------EE------------ECCSSCCCCCEEECTT-SCEEEECCCTTCG
T ss_pred ------------------------------------cC------------CCCCCcCCceEEECCC-CcEEEEECCCCCC
Confidence 00 0000111122333332 2344432
Q ss_pred -------cCCCceEEEecCCCC-------ceEEEeCCCCCccceeEecCCCeEEEEeCCCCe---EEEEeCCCCc-----
Q psy5806 758 -------ISEKTIERVRFDMTG-------RERLVVNDLNRTESIAVDAIGRKIYWTDMNAQT---IMVSDIDGKN----- 815 (1332)
Q Consensus 758 -------~~~~~I~r~~~~g~~-------~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~---I~v~~ldG~~----- 815 (1332)
...++|.|++++|+. ..++...++.+|.||++|..+++||++|...+. |.+....+.+
T Consensus 159 ~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~ 238 (354)
T 3a9g_A 159 RLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLA 238 (354)
T ss_dssp GGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTC
T ss_pred ccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcc
Confidence 124678888888862 234667789999999999978889999987654 5555432210
Q ss_pred ----------eEEEEe-cCCCCCeEEEEeC------CCCeEEEEecccCcCCCCceEEEecCCCCc----EEEecc-ccc
Q psy5806 816 ----------AKVLFW-LNLYRPRSIVVHY------GLGLMVWADWSRTRLTNNRIEMAHMDGTNR----AVFETE-VIW 873 (1332)
Q Consensus 816 ----------~~~l~~-~~~~~P~~Iavdp------~~g~lywtd~g~~~~~~~~I~r~~~dG~~~----~~l~~~-l~~ 873 (1332)
.-+..+ .....|.+|++.. .+|.||++++... +|.+..+++... ..+... ...
T Consensus 239 ~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~-----~v~~~~~~~~g~~~~~~~~~~~~~~r 313 (354)
T 3a9g_A 239 TGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGS-----MLAAVNFGDNMEVRKISTFFKNVFGR 313 (354)
T ss_dssp CSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTT-----EEEEEEECGGGCEEEEEEECTTTSCC
T ss_pred cCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCC-----EEEEEEECCCCcccceeeeccCCCCC
Confidence 111122 2234699999941 5699999998655 899999986432 234333 567
Q ss_pred CceeEEeCCCCCeEEEEeCC-CC---------eEEEEccCC
Q psy5806 874 PSCLAIDYSDNPKLYWVDTS-KH---------TIEYKTLAT 904 (1332)
Q Consensus 874 P~gl~iD~~~~~~lYw~d~~-~~---------~I~~~~~dG 904 (1332)
|.+++++.++ .||+++.. .+ +|+++.+.|
T Consensus 314 p~~v~~~pDG--~lyv~~~~~~G~g~~~~~~g~i~ri~~~g 352 (354)
T 3a9g_A 314 LRDVVIDDDG--GILISTSNRDGRGSLRAGDDKILKIVSEQ 352 (354)
T ss_dssp EEEEEECTTS--CEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred eeEEEECCCC--cEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence 9999999876 89999853 33 777776654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-10 Score=135.57 Aligned_cols=250 Identities=13% Similarity=0.114 Sum_probs=162.8
Q ss_pred EEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEE----EeCCCCCceEEEEecC---CCeEEEEecCC-
Q psy5806 503 NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLL----FWQNLSEPRDIAVNPI---GGIMYWCSWGD- 574 (1332)
Q Consensus 503 ~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l----~~~~~~~P~~iavdp~---~G~lywtd~g~- 574 (1332)
+++..++..|.+||++.-+ +||+++.. ++|.+.+ +|+...+. ...++..|.+||++|. +|+||.++...
T Consensus 24 ~~va~~l~~P~~ia~~pdG-~l~V~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 24 EEVVGGLEVPWALAFLPDG-GMLIAERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp EEEECCCSCEEEEEECTTS-CEEEEETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred EEEECCCCCceEEEEcCCC-eEEEEeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 3445678899999999865 59999876 8999998 77533221 1245678999999998 89999998642
Q ss_pred ---CCceEEEcCCCC---ceEEEEe------CCCCCceeeEEeccCCeEEEEeCCC-------------CeEEEEecCCC
Q psy5806 575 ---LHKIEMAGMDGS---HRHILAS------DSLKNPTGLAIDLENSRLYWANVGL-------------KTIEFTNLDGT 629 (1332)
Q Consensus 575 ---~~~I~r~~~dG~---~~~~l~~------~~l~~p~glaiD~~~~rLYw~d~~~-------------~~I~~~~~dG~ 629 (1332)
..+|.|...++. ..++++. ...+.|++|++++.. +||+++... ++|.+++.||+
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 168999988864 3344442 234678999999865 899997532 23333333332
Q ss_pred ceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccc
Q psy5806 630 RKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKF 709 (1332)
Q Consensus 630 ~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ 709 (1332)
+ |..| +|
T Consensus 180 ----~--------------------------p~~n-------------------------------------------pf 186 (352)
T 2ism_A 180 ----P--------------------------APGN-------------------------------------------PF 186 (352)
T ss_dssp ----B--------------------------CTTC-------------------------------------------TT
T ss_pred ----C--------------------------CCCC-------------------------------------------cc
Confidence 0 0000 00
Q ss_pred eEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCc--------eEEEecCCC----------
Q psy5806 710 LLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKT--------IERVRFDMT---------- 771 (1332)
Q Consensus 710 ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~--------I~r~~~~g~---------- 771 (1332)
. .. . .....+ . ..++++|.++++|+.++.||++|...+. |.++...+.
T Consensus 187 ~---~~--------~-~~~~~i-~-a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 187 L---GR--------R-GARPEV-Y-SLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp T---TC--------T-TSCTTE-E-EECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred c---CC--------C-CCCccE-E-EEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 0 00 0 000001 1 1257788999999988999999987665 666544321
Q ss_pred ----CceEEEe-CCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCc-------eEEEEecCCCCCeEEEEeCCCCeE
Q psy5806 772 ----GRERLVV-NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN-------AKVLFWLNLYRPRSIVVHYGLGLM 839 (1332)
Q Consensus 772 ----~~~~vi~-~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~-------~~~l~~~~~~~P~~Iavdp~~g~l 839 (1332)
....+.. .....|.|+++ | .++||+++...++|.+..+++.. ...++ ....+|++|+++|. |.|
T Consensus 253 ~~~~~~~p~~~~~~~~ap~G~~~-~-~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pd-G~l 328 (352)
T 2ism_A 253 NDPRYRDPLYFWPQGFPPGNLAF-F-RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPD-GAL 328 (352)
T ss_dssp CCTTSCCCSEECTTCCCEEEEEE-E-TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTT-SCE
T ss_pred CCCCCcCCeEecCCCCCCcceEE-E-CCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCC-CcE
Confidence 0111111 22346899999 4 55899999999999999886442 12333 34578999999997 899
Q ss_pred EEEecccC
Q psy5806 840 VWADWSRT 847 (1332)
Q Consensus 840 ywtd~g~~ 847 (1332)
|+++++..
T Consensus 329 yv~~~~~~ 336 (352)
T 2ism_A 329 YVTTSNRD 336 (352)
T ss_dssp EEEECSTT
T ss_pred EEEEeCCC
Confidence 99998644
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-10 Score=131.42 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=170.1
Q ss_pred EEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEE-----eCCCCCceEEEEecC---CCeEEEEecC--
Q psy5806 504 VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLF-----WQNLSEPRDIAVNPI---GGIMYWCSWG-- 573 (1332)
Q Consensus 504 v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~-----~~~~~~P~~iavdp~---~G~lywtd~g-- 573 (1332)
++..++..|.+||++.- ++||+++.. ++|.+.+.+|. +++. ..+...|.+||++|. +|+||+++..
T Consensus 23 ~va~~l~~P~~ia~~pd-G~l~V~e~~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 23 EVASDLEVPWSIAPLGG-GRYLVTERP-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp EEECSCSCEEEEEEEET-TEEEEEETT-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred EEeCCCCCCeEEEEcCC-CeEEEEeCC-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 44457899999999984 579999876 89999987776 3332 245678999999998 8999999853
Q ss_pred CC----CceEEEcCCCC-----ceEEEEe----CCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecce
Q psy5806 574 DL----HKIEMAGMDGS-----HRHILAS----DSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHL 640 (1332)
Q Consensus 574 ~~----~~I~r~~~dG~-----~~~~l~~----~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l 640 (1332)
.. .+|.|...++. ..++++. ...+.|++|++++.. +||++....+..
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~------------------- 158 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADP------------------- 158 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCG-------------------
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCC-------------------
Confidence 22 68999988876 2444432 335678999999855 799997542100
Q ss_pred EEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEE
Q psy5806 641 KVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQ 720 (1332)
Q Consensus 641 ~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~ 720 (1332)
+...+ +. +....|.+
T Consensus 159 -------------------------~~~~d----------~~------------------------------~~~G~I~r 173 (354)
T 3a9g_A 159 -------------------------RLAQD----------LS------------------------------SLAGKILR 173 (354)
T ss_dssp -------------------------GGGTC----------TT------------------------------CCSSEEEE
T ss_pred -------------------------ccccC----------CC------------------------------CCCeEEEE
Confidence 00000 00 00112222
Q ss_pred EecCCCCC------cceeeecccccceeEEeecCCCceEEEEecCCCc---eEEEecCCC--------------CceEEE
Q psy5806 721 ISLDVEYR------YPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKT---IERVRFDMT--------------GRERLV 777 (1332)
Q Consensus 721 i~l~~~~~------~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~---I~r~~~~g~--------------~~~~vi 777 (1332)
++.+.... ...+. ..+++++.++++|+.++.||++|...+. |.++...+. ....+.
T Consensus 174 i~~dG~~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred EcCCCCCCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence 22221100 00011 1367889999999988999999987654 555543221 011222
Q ss_pred e--CCCCCccceeE-------ecCCCeEEEEeCCCCeEEEEeCCCC--ce--EEEEecCCCCCeEEEEeCCCCeEEEEec
Q psy5806 778 V--NDLNRTESIAV-------DAIGRKIYWTDMNAQTIMVSDIDGK--NA--KVLFWLNLYRPRSIVVHYGLGLMVWADW 844 (1332)
Q Consensus 778 ~--~~~~~p~glAv-------D~~~~nLYwtD~~~~~I~v~~ldG~--~~--~~l~~~~~~~P~~Iavdp~~g~lywtd~ 844 (1332)
. .....|.|+++ +|.+ +||+++....+|.+..+++. .. ..++.....+|++|+++|. |.||++++
T Consensus 253 ~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD-G~lyv~~~ 330 (354)
T 3a9g_A 253 DTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD-GGILISTS 330 (354)
T ss_dssp ECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT-SCEEEEEC
T ss_pred ecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC-CcEEEEEe
Confidence 2 12346999999 6654 89999999999999999753 21 2333223568999999997 89999997
Q ss_pred ccC-cC----CCCceEEEecCC
Q psy5806 845 SRT-RL----TNNRIEMAHMDG 861 (1332)
Q Consensus 845 g~~-~~----~~~~I~r~~~dG 861 (1332)
... +. ...+|.|....|
T Consensus 331 ~~~G~g~~~~~~g~i~ri~~~g 352 (354)
T 3a9g_A 331 NRDGRGSLRAGDDKILKIVSEQ 352 (354)
T ss_dssp TTSSSSCCCTTCSCEEEEEETT
T ss_pred CCCCCcCCCCCCCEEEEEecCC
Confidence 422 00 012677776544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.8e-09 Score=120.38 Aligned_cols=318 Identities=11% Similarity=0.055 Sum_probs=195.6
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCC--cEEEec-ccccCceeEEeCCCCCeEEEEeC---CCCeEEE
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTN--RAVFET-EVIWPSCLAIDYSDNPKLYWVDT---SKHTIEY 899 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~--~~~l~~-~l~~P~gl~iD~~~~~~lYw~d~---~~~~I~~ 899 (1332)
.|..++..+..-++|+..+... ....|....+|... .+.+.. ....|.+|+++.++ +.||.+.. ..+.|..
T Consensus 3 ~p~~~~~~~~~~~~~vg~y~~~--~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~ 79 (361)
T 3scy_A 3 QPTDPSTTDSELTMLVGTYTSG--NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADG-KFVYSVNEFSKDQAAVSA 79 (361)
T ss_dssp ---CCCGGGGEEEEEEEECCSS--SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTS-SEEEEEECCSSTTCEEEE
T ss_pred CCCChhhCCCceEEEEEeccCC--CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCC-CEEEEEEccCCCCCcEEE
Confidence 3555555555556777665422 12457777666432 122211 47789999999999 89999987 3467765
Q ss_pred EccCC--CceeEEec---cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccC
Q psy5806 900 KTLAT--GRAKRAYA---VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGS 974 (1332)
Q Consensus 900 ~~~dG--~~~~~l~~---~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~ 974 (1332)
.+++. ...+.+.. ....|..+++.+.+||.++...++|...+.... +
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~---------------------g------- 131 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQD---------------------G------- 131 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTT---------------------S-------
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCC---------------------C-------
Confidence 55543 33333322 456788888877789999887777764331100 0
Q ss_pred CCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeC
Q psy5806 975 NNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHY 1054 (1332)
Q Consensus 975 ~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~ 1054 (1332)
. +. . ...++ ........ .. -.....+.+++|++
T Consensus 132 ---~---------------------~~--------~-~~~~~-----------~~~g~~~~-~~--~~~~~~~~~~~~sp 164 (361)
T 3scy_A 132 ---A---------------------LL--------P-ASDVI-----------EFKGSGPD-KE--RQTMPHLHCVRITP 164 (361)
T ss_dssp ---C---------------------BC--------S-CSEEE-----------ECCCCCSC-TT--TCSSCCEEEEEECT
T ss_pred ---c---------------------Cc--------c-cceeE-----------EccCCCCC-cc--ccCCCcceEEEECC
Confidence 0 00 0 00000 00000000 00 01123467899999
Q ss_pred CCcEEEEEeCCCCeEEEEECCCCCC------c------eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-
Q psy5806 1055 SKNLIYFADMRSGNLRTFDMSDSTR------I------KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ- 1121 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~~I~~~~l~~g~~------~------~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~- 1121 (1332)
.+++||+++...+.|..++++..+. . ..+.......|.++++++.++.||+++...+.|.+++++..
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 9999999998889998887764332 1 12222334579999999999999999988889999999743
Q ss_pred eEEE--Ee---cCCCCceEEEEcCCCcEEEEEecC-CCCCCCCCcEEEEecC--CCceEEE--EecCCCCcceEEEecCC
Q psy5806 1122 HKKI--LV---NDLMEPLAIAVYPRRGLLFYSHWG-LYDNSPTTKIEKVYLD--GSYRTVL--VEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1122 ~~~~--~~---~~~~~P~~iavdp~~g~Lywtd~~-~~~~~~~~~I~r~~ld--G~~~~~l--~~~~l~~p~glaiD~~~ 1191 (1332)
...+ +. .....|++|+++|...+||+++.+ . ..|...+++ ....+.+ +.. -..|.+|++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~------~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg 317 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA------DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG 317 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS------CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC------CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC
Confidence 2222 21 234568999999988889999877 4 456665554 2232222 222 3579999999999
Q ss_pred CEEEEEEcCCCeEEEEecC--CCceEEEEe---ecccceEEE
Q psy5806 1192 RRLFWADSTNKRIEYCDFF--GRSRKIVIS---KVAPYGLSV 1228 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~d--G~~~~~~~~---~~~P~glav 1228 (1332)
+.||+++...+.|..+.+| ....+.+.. ...|..|++
T Consensus 318 ~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 318 KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 9999999888888886555 323332222 455666654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-09 Score=122.77 Aligned_cols=304 Identities=10% Similarity=0.037 Sum_probs=186.1
Q ss_pred CCeEEEEeCCCCeEEEEeCC--CCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC--CCCcEEEe
Q psy5806 793 GRKIYWTDMNAQTIMVSDID--GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD--GTNRAVFE 868 (1332)
Q Consensus 793 ~~nLYwtD~~~~~I~v~~ld--G~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d--G~~~~~l~ 868 (1332)
.+.||+++...+.|.+.+++ |+............|.+++++|...+||++.... .+|....++ +.....+.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~ 78 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAA 78 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeecc
Confidence 45789998888999999886 4433332223346799999999977899988643 367776666 33323222
Q ss_pred c--ccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC-CCceeEEe--ccCCcceEEEEe--CCEEEEEeCCCCEEEEEE
Q psy5806 869 T--EVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA-TGRAKRAY--AVQSHPYTLTVL--DYYVYWTDVQHSKIYRAN 941 (1332)
Q Consensus 869 ~--~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d-G~~~~~l~--~~~~~P~~la~~--~~~iywtD~~~~~i~~~~ 941 (1332)
. ....|.+++++.++ +.||++....+.|...+++ |...+.+. .....|.++++. +.+||.++...+.|..
T Consensus 79 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~-- 155 (343)
T 1ri6_A 79 ESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL-- 155 (343)
T ss_dssp EEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE--
T ss_pred ccccCCCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEE--
Confidence 2 13478999999999 8899998877778777763 22111111 123344455544 3355555444444332
Q ss_pred CCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeec
Q psy5806 942 KYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRF 1021 (1332)
Q Consensus 942 ~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~ 1021 (1332)
T Consensus 156 -------------------------------------------------------------------------------- 155 (343)
T 1ri6_A 156 -------------------------------------------------------------------------------- 155 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeCCCCCCCCc----ccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce----eEeec--C---C
Q psy5806 1022 GVIRRISLDTADLLPV----TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK----PIPLM--N---D 1088 (1332)
Q Consensus 1022 ~~i~~i~l~~~~~~~~----~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~----~i~~~--~---~ 1088 (1332)
+++........ ....+....+.+++|++.++.||+++...+.|..++++..++.. .+... + .
T Consensus 156 -----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 156 -----FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp -----EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred -----EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 11111000000 00111123467899999999999999888999999985322211 11111 1 2
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeC--Cc-eEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSD--GQ-HKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ld--G~-~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r 1163 (1332)
..|.+|++++.++.||++....+.|.+++++ +. ...+ +... ..|.+++++|...+||++.... ..-.|++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~----~~v~v~~ 305 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKS----HHISVYE 305 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTT----CEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCC----CeEEEEE
Confidence 3566899999999999999888899999997 32 2222 3333 4599999999888899998544 1233455
Q ss_pred EecCCCceEEEEecCC-CCcceEEEecCCCEE
Q psy5806 1164 VYLDGSYRTVLVEEDL-AFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1164 ~~ldG~~~~~l~~~~l-~~p~glaiD~~~~~L 1194 (1332)
++.+....+.+..-.. ..|.+|+++++.+++
T Consensus 306 ~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~~~ 337 (343)
T 1ri6_A 306 IVGEQGLLHEKGRYAVGQGPMWVVVNAHEGGS 337 (343)
T ss_dssp EETTTTEEEEEEEEECSSSCCEEEEEEEC---
T ss_pred EcCCCceeeEccccccCCCCeeEEEEcccCCc
Confidence 5554443333322122 679999999877664
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-10 Score=128.39 Aligned_cols=201 Identities=13% Similarity=0.166 Sum_probs=147.0
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC----ceEEEEeeCC
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM----HTINVARSDG 1120 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~----~~I~v~~ldG 1120 (1332)
..+.+++|++.+ +|||++...+.|++++++++. ...+.......|.+|++|.. ++||++.... +.|.+++.++
T Consensus 45 ~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 45 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKD-GRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CCEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTT-SCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccccCcEECCCC-CEEEEECCCCEEEEEeCCCCc-EEEEeeCCCCCcceEEECCC-CcEEEEeCCCCCCCceEEEEeCCC
Confidence 346788999765 599999888999999976433 33333234467999999964 5788987765 6898899887
Q ss_pred ceEE-EEe--cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1121 QHKK-ILV--NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1121 ~~~~-~~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
.... .+. .....|.+|+++| .|.||+++...........|++++.++.....+.. ....|++|+++++++.||++
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEE
T ss_pred CEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEE
Confidence 6544 332 1235799999999 68999998642101123679999988765555443 45779999999998899999
Q ss_pred EcCCCeEEEEecC--CCceEE-----EEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1198 DSTNKRIEYCDFF--GRSRKI-----VIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1198 d~~~~~I~~~d~d--G~~~~~-----~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+...+.|.+++++ |..... ... ...|.+|++ +.++.||++++..+.|.++++.
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~------d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI------DSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE------BTTCCEEEEEETTTEEEEECTT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE------CCCCCEEEEEcCCCEEEEECCC
Confidence 9888999999994 443322 222 247999999 4567899999988999999873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-09 Score=122.97 Aligned_cols=248 Identities=10% Similarity=0.014 Sum_probs=168.5
Q ss_pred CCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEe-CCEEEEEeCCCCEEE
Q psy5806 860 DGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVL-DYYVYWTDVQHSKIY 938 (1332)
Q Consensus 860 dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~-~~~iywtD~~~~~i~ 938 (1332)
.|...+.+...+..|.|+++|.++ ++|||++...+.|...+.++. .+.+......|.+|++. ++.||+++...+.|.
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~g-~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPAR-SAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGG-TEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCCcEEEEecCCccccCCeEeCCC-CEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344556666668889999999998 789999999999999999988 66665566779999997 568999988888888
Q ss_pred EEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEE
Q psy5806 939 RANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYT 1018 (1332)
Q Consensus 939 ~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~ 1018 (1332)
+.+..+|+... ... .
T Consensus 94 ~~d~~~g~~~~---------~~~-~------------------------------------------------------- 108 (296)
T 3e5z_A 94 RQREPGGEWES---------IAD-S------------------------------------------------------- 108 (296)
T ss_dssp EECSTTCCEEE---------EEC-E-------------------------------------------------------
T ss_pred EEcCCCCcEEE---------Eee-c-------------------------------------------------------
Confidence 76654441100 000 0
Q ss_pred eecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC-----------------CCCeEEEEECCCCCCce
Q psy5806 1019 SRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM-----------------RSGNLRTFDMSDSTRIK 1081 (1332)
Q Consensus 1019 ~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~-----------------~~~~I~~~~l~~g~~~~ 1081 (1332)
... .....+.++++++. ++||++|. ..+.|++++.+ +. .
T Consensus 109 -~~~-------------------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~ 164 (296)
T 3e5z_A 109 -FEG-------------------KKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--L 164 (296)
T ss_dssp -ETT-------------------EECCCCCCEEECTT-SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--E
T ss_pred -cCC-------------------CCCCCCCCEEECCC-CCEEEECCccccccccccccccccCCCcEEEEECCC-CC--E
Confidence 000 00011223344443 23555432 13456666533 22 2
Q ss_pred eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC--Cce---EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCC
Q psy5806 1082 PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD--GQH---KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNS 1156 (1332)
Q Consensus 1082 ~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld--G~~---~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~ 1156 (1332)
..+......|.|||+++.++.| |++...++|.+++++ |+. ..++......|.+|++|+ +|.||++. .
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~---- 236 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--G---- 236 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--T----
T ss_pred EEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--C----
Confidence 2223556789999999888888 999999999999985 544 233422446799999999 68899998 3
Q ss_pred CCCcEEEEecCCCceEEEEecCCCCcceEEEe-cCCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1157 PTTKIEKVYLDGSYRTVLVEEDLAFPNELAID-FKQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1157 ~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD-~~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
..|.+.+.+|.....+-. ... |..++++ ++++.||++.. +.|.++++...
T Consensus 237 --~~v~~~~~~g~~~~~~~~-~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~ 287 (296)
T 3e5z_A 237 --DGVHVLTPDGDELGRVLT-PQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVR 287 (296)
T ss_dssp --TEEEEECTTSCEEEEEEC-SSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCC
T ss_pred --CeEEEECCCCCEEEEEEC-CCC-ceeEEEECCCCCEEEEEcC--CeEEEEEcccc
Confidence 469999999866544433 334 8999995 67788999865 58999988654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-10 Score=131.67 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=155.7
Q ss_pred CCccceEEEEEeCCCcEEEEE-------eCCCCeEEEEECCCCCCceeEeec----CCCCceeeEEEecCCeEEEEcCCC
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFA-------DMRSGNLRTFDMSDSTRIKPIPLM----NDTIRDNFVIDWVANNIYYIDSQM 1110 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~s-------d~~~~~I~~~~l~~g~~~~~i~~~----~~~~p~glAvDw~~~~LY~td~~~ 1110 (1332)
.++..|.+++|++ ++.|||+ +...+.|+++++.++.. ..+... ....|.+|++|..+++||+++...
T Consensus 15 ~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp CCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred ccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3456788999995 5579999 77788999998664432 222210 225799999997658999998754
Q ss_pred ceEEEEeeCCceEEE-Eec----CCCCceEEEEcCCCcEEEEEecCC---------CCCCCCCcEEEEecCCCceEEEEe
Q psy5806 1111 HTINVARSDGQHKKI-LVN----DLMEPLAIAVYPRRGLLFYSHWGL---------YDNSPTTKIEKVYLDGSYRTVLVE 1176 (1332)
Q Consensus 1111 ~~I~v~~ldG~~~~~-~~~----~~~~P~~iavdp~~g~Lywtd~~~---------~~~~~~~~I~r~~ldG~~~~~l~~ 1176 (1332)
.|.+++.+|+.... ... ....|++|++|| .|.||+++.+. ........|++.+.+|+. ..+..
T Consensus 93 -~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~ 169 (314)
T 1pjx_A 93 -GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDT 169 (314)
T ss_dssp -EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEE
T ss_pred -CEEEEeCCCCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEecc
Confidence 78888888654332 211 224699999999 68999998642 001112579999988543 33333
Q ss_pred cCCCCcceEEEe----cCCCEEEEEEcCCCeEEEEecC--CC--ceEEEEe-e----cccceEEEecCCccccccEEEEE
Q psy5806 1177 EDLAFPNELAID----FKQRRLFWADSTNKRIEYCDFF--GR--SRKIVIS-K----VAPYGLSVRQSPGKAFIVELYWT 1243 (1332)
Q Consensus 1177 ~~l~~p~glaiD----~~~~~LY~~d~~~~~I~~~d~d--G~--~~~~~~~-~----~~P~glav~~~~~~~~~~~lYwt 1243 (1332)
.+..|++++++ ++++.||+++...++|.+++++ |. .+..+.. . ..|.+|++ +.++.||++
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~------d~~G~l~v~ 242 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF------DEDNNLLVA 242 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE------BTTCCEEEE
T ss_pred -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE------CCCCCEEEE
Confidence 45789999999 8888999999999999999986 32 1223333 1 67999999 456899999
Q ss_pred ECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEE
Q psy5806 1244 DWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKA 1279 (1332)
Q Consensus 1244 d~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 1279 (1332)
++..+.|.++++.++ .....+......+..|..
T Consensus 243 ~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~i~~ 275 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHF 275 (314)
T ss_dssp EETTTEEEEECTTCB---SCSEEEECSSSCEEEEEE
T ss_pred EcCCCEEEEEcCCCC---cEeEEEeCCCCCceeEEE
Confidence 999999999998766 444444444345555543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=135.81 Aligned_cols=192 Identities=11% Similarity=0.115 Sum_probs=138.7
Q ss_pred CccceEEEEEeCCCcEEEEEeCC-----CCeEEEEECCCCCCceeEeec-C----CCCceeeEEEecCCeEEEEcC---C
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMR-----SGNLRTFDMSDSTRIKPIPLM-N----DTIRDNFVIDWVANNIYYIDS---Q 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~-----~~~I~~~~l~~g~~~~~i~~~-~----~~~p~glAvDw~~~~LY~td~---~ 1109 (1332)
.+..|.+|++|+. ++|||+|.. .++|.++++.++.-...+... . ...|.+||+|..++.+|++|. .
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3456899999987 579999976 578999998744323333211 1 135799999987889999998 7
Q ss_pred CceEEEEeeC-CceEEEEec--------------C---------------CCCceEEEEcCCCcEEEEEecCCCCCCCCC
Q psy5806 1110 MHTINVARSD-GQHKKILVN--------------D---------------LMEPLAIAVYPRRGLLFYSHWGLYDNSPTT 1159 (1332)
Q Consensus 1110 ~~~I~v~~ld-G~~~~~~~~--------------~---------------~~~P~~iavdp~~g~Lywtd~~~~~~~~~~ 1159 (1332)
.+.|.+++++ |+...++.. + ...|.+||++|....||+++... .
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~------~ 217 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS------T 217 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC------S
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC------C
Confidence 7899999987 544333311 0 13479999999777999999765 6
Q ss_pred cEEEEecC----CC--ce-----EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec-CCCceEEEEe---ecccc
Q psy5806 1160 KIEKVYLD----GS--YR-----TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF-FGRSRKIVIS---KVAPY 1224 (1332)
Q Consensus 1160 ~I~r~~ld----G~--~~-----~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~-dG~~~~~~~~---~~~P~ 1224 (1332)
+|++++.+ +. .. ..... ....|.||++|.+ ++||+++...++|.++|. +|+. ..++. ...|.
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~ 294 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTD 294 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEE
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCC
Confidence 89999753 21 00 01111 2358999999975 789999999999999999 7753 33333 67899
Q ss_pred eEEEecCCccccccEEEEEECCCCEE
Q psy5806 1225 GLSVRQSPGKAFIVELYWTDWEAMSV 1250 (1332)
Q Consensus 1225 glav~~~~~~~~~~~lYwtd~~~~~V 1250 (1332)
+|++ +.+++||+++...+++
T Consensus 295 ~va~------~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 295 SFNF------GSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEE------CTTSCEEEEECCGGGS
T ss_pred eeEE------CCCCcEEEEeCccccc
Confidence 9999 3468899999765544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-08 Score=116.75 Aligned_cols=284 Identities=13% Similarity=0.136 Sum_probs=180.6
Q ss_pred eEEEEecccCcCCCCceEEEecCCCCc-EE---EecccccCceeEEeCCCCCeEEEEeCC--CCeEEEEccCCCceeEEe
Q psy5806 838 LMVWADWSRTRLTNNRIEMAHMDGTNR-AV---FETEVIWPSCLAIDYSDNPKLYWVDTS--KHTIEYKTLATGRAKRAY 911 (1332)
Q Consensus 838 ~lywtd~g~~~~~~~~I~r~~~dG~~~-~~---l~~~l~~P~gl~iD~~~~~~lYw~d~~--~~~I~~~~~dG~~~~~l~ 911 (1332)
+||+..+... ....|....+|.... .. .......|.+++++.++ + ||+++.. .+.|...++++...+.+.
T Consensus 4 ~~~vg~y~~~--~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~~~~~ 79 (347)
T 3hfq_A 4 RILFGTYTKK--TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTAHKLN 79 (347)
T ss_dssp EEEEEECCSS--SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred EEEEEeccCC--CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcEEEee
Confidence 5666654322 113566666665322 11 12227789999999987 4 9998863 578888888765544443
Q ss_pred c---cCCcceEEEEe--CCEEEEEeCCCCEEEEEECC-CCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCcccccc
Q psy5806 912 A---VQSHPYTLTVL--DYYVYWTDVQHSKIYRANKY-DVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLR 985 (1332)
Q Consensus 912 ~---~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~-~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~ 985 (1332)
. ....|.+|++. +.+||.++...+.|...+.. +|+
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--------------------------------------- 120 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA--------------------------------------- 120 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC---------------------------------------
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC---------------------------------------
Confidence 2 46678888887 55799888777776543211 000
Q ss_pred CCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCC
Q psy5806 986 NPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR 1065 (1332)
Q Consensus 986 ~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~ 1065 (1332)
.. . +..+..... .+ . +-.....+.++++++.++ +|+++..
T Consensus 121 ---------------------------~~-------~-~~~~~~~~~--~p-~-~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 121 ---------------------------LT-------L-TDTVQHSGH--GP-R-PEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp ---------------------------EE-------E-EEEEECCCC--CS-S-TTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred ---------------------------ee-------e-cceeecCCC--CC-C-ccccCCCceEEEECCCCc-EEEEeCC
Confidence 00 0 111111100 00 0 111233477899999888 9999988
Q ss_pred CCeEEEEECC-CCCCcee--EeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC---ceEEE--EecC------CC
Q psy5806 1066 SGNLRTFDMS-DSTRIKP--IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG---QHKKI--LVND------LM 1131 (1332)
Q Consensus 1066 ~~~I~~~~l~-~g~~~~~--i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG---~~~~~--~~~~------~~ 1131 (1332)
.+.|..++++ +|.-... +.......|.++++++.++.||+++...+.|.+++++. +...+ +... ..
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 8999988877 2321111 11122337899999999999999998889999999873 33222 2211 14
Q ss_pred CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEE--EecCCCCcceEEEecCCCEEEEEEcCCCeEEEEe
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVL--VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCD 1208 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l--~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d 1208 (1332)
.|.+|+++|...+||+++.+. ..|...+++.. ..+.+ +...-..|.+|+++++++.||+++...+.|..++
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGY------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETT------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceeEEECCCCCEEEEEeCCC------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 589999999877899998765 56777776522 22222 2222356999999999999999999888888875
Q ss_pred cC
Q psy5806 1209 FF 1210 (1332)
Q Consensus 1209 ~d 1210 (1332)
+|
T Consensus 315 ~d 316 (347)
T 3hfq_A 315 RD 316 (347)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-09 Score=121.00 Aligned_cols=288 Identities=8% Similarity=-0.006 Sum_probs=186.8
Q ss_pred ecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCce-EEEEecCC
Q psy5806 746 VDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNA-KVLFWLNL 824 (1332)
Q Consensus 746 ~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~-~~l~~~~~ 824 (1332)
|+...+++|+++...+.|..+++........+..+...| ++++++.++.||+++...++|.+.++++... ...+. ..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~ 82 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EG 82 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-EC
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cC
Confidence 556678999999999999999987655555555566677 9999999999999999888999999965443 22222 23
Q ss_pred CCCeE-EEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCe-EEEEcc
Q psy5806 825 YRPRS-IVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHT-IEYKTL 902 (1332)
Q Consensus 825 ~~P~~-Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~-I~~~~~ 902 (1332)
..|.. ++++|...+|| +..+.. ..++|...+++.............|.++++++++ ++||.++...+. |...++
T Consensus 83 ~~~~~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNG-NGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp SSCCCCEEECTTSSEEE-ECCCSS--SSCEEEEEETTTTEEEEEEECCTTEEEEEECTTS-SCEEEEEETTTTEEEEEEE
T ss_pred CCCccceEECCCCCEEE-EecCCC--CcccEEEEECCCCCeEEEEECCCCccceEECCCC-CEEEEEecCCCceEEEEEE
Confidence 57888 99999977888 433322 0127888877654333333335568999999999 889999887677 776666
Q ss_pred CCCce-----eEEeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCC
Q psy5806 903 ATGRA-----KRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSN 975 (1332)
Q Consensus 903 dG~~~-----~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~ 975 (1332)
+.... .........|.++++. +.++|.+....+.|...+..+++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~----------------------------- 209 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE----------------------------- 209 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT-----------------------------
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-----------------------------
Confidence 53221 1112234456677665 33577776666665532211110
Q ss_pred CCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCC
Q psy5806 976 NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYS 1055 (1332)
Q Consensus 976 nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~ 1055 (1332)
.. .. +..+. ....+.+++|++.
T Consensus 210 -------------------------------~~------------~~-~~~~~--------------~~~~~~~~~~spd 231 (331)
T 3u4y_A 210 -------------------------------NI------------TL-LNAVG--------------TNNLPGTIVVSRD 231 (331)
T ss_dssp -------------------------------SC------------EE-EEEEE--------------CSSCCCCEEECTT
T ss_pred -------------------------------cc------------ce-eeecc--------------CCCCCceEEECCC
Confidence 00 00 11111 1123456778888
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCc--eeEeec------CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRI--KPIPLM------NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~--~~i~~~------~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
++.||+++...+.|..+++.++... ..+... ....+.+|++++.++.||++....+.|.++++.+.....+
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence 8888888877778888887644321 111111 0112245899999999999999889999999987655443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-10 Score=128.10 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=150.8
Q ss_pred cccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCce
Q psy5806 737 QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNA 816 (1332)
Q Consensus 737 ~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~ 816 (1332)
...-+.+..+++.++.|||+|...+.|+++++++.....+.. -..|.++++|..++ ||++. .+.|.+.++++...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM--DAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--SSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC--CCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence 344567888999899999999999999999998765543322 25689999998776 88876 46799998875544
Q ss_pred EEEEec----CCCCCeEEEEeCCCCeEEEEecccCc------CCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCe
Q psy5806 817 KVLFWL----NLYRPRSIVVHYGLGLMVWADWSRTR------LTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPK 886 (1332)
Q Consensus 817 ~~l~~~----~~~~P~~Iavdp~~g~lywtd~g~~~------~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~ 886 (1332)
+.+... ....|.+|++||. |.+|+++++... ....+|.+...+|+.. .+...+..|+|++++.++ +.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg-~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDH-KI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTS-CE
T ss_pred EEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCC-CE
Confidence 444332 1245889999996 889988764320 0124688887777543 344448889999999999 89
Q ss_pred EEEEeCCCCeEEEEccC---CC--ceeEEec---cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 887 LYWVDTSKHTIEYKTLA---TG--RAKRAYA---VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 887 lYw~d~~~~~I~~~~~d---G~--~~~~l~~---~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
|||++...++|..++++ |. +++.+.. ....|.+++++ +++||.+.+..++|.++++.+|+.+
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 99999999999999875 32 1233332 23679999998 5799999999999999998877544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-09 Score=125.30 Aligned_cols=212 Identities=10% Similarity=0.064 Sum_probs=148.7
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+.++.|++.++.|||++...+.|++++.+++ ....+ . ....|.+|+++.. +++|++.. +.|.++++++...+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~~~~-~-~~~~v~~i~~~~d-g~l~v~~~--~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-RKTVH-A-LPFMGSALAKISD-SKQLIASD--DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-EEEEE-E-CSSCEEEEEEEET-TEEEEEET--TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-cEEEE-E-CCCcceEEEEeCC-CeEEEEEC--CCEEEEECCCCcEEE
Confidence 46788999999999999999999999997633 22222 2 2347899999964 66777763 458888886433333
Q ss_pred Eec-----CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1126 LVN-----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1126 ~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+.. ....|+++++|| .|.||+++.+.........|++++ +|+.. .+. ..+..|++|+++++++.|||++..
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~-~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLF-ADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEE-EEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-Eee-CCCcccCCeEEcCCCCEEEEEECC
Confidence 322 124689999999 678888875420011246799998 66433 333 345789999999999999999999
Q ss_pred CCeEEEEecC---C-C--ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1201 NKRIEYCDFF---G-R--SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1201 ~~~I~~~d~d---G-~--~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
.++|.+++++ | . +++++.. ...|.+|++ +.++.||++.+..+.|.++++ +| .....+...
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~------d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~ 269 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC------DAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVP 269 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE------CTTSCEEEEEETTTEEEEECT-TC---CEEEEEECS
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEE------CCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECC
Confidence 9999999985 4 2 2344433 467999999 557789999999899999998 45 444444443
Q ss_pred CCCeeeE
Q psy5806 1271 QEDFLNI 1277 (1332)
Q Consensus 1271 ~~~~~~i 1277 (1332)
...+..+
T Consensus 270 ~~~~~~~ 276 (326)
T 2ghs_A 270 GKQTTCP 276 (326)
T ss_dssp CSBEEEE
T ss_pred CCCcEEE
Confidence 3344444
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-12 Score=160.24 Aligned_cols=112 Identities=24% Similarity=0.479 Sum_probs=89.4
Q ss_pred cccccCCCCC---ceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCC
Q psy5806 9 WVGYLQEIPQ---YKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCS 85 (1332)
Q Consensus 9 ~~~~~~c~~~---~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~ 85 (1332)
|...++|.-. .+.|. .+.|++..+.||+..+|.+.+++ | |...+|+|.+|.||+..|+|||..||+
T Consensus 162 ~~~~v~C~G~E~sl~~C~-~~~~~~~~h~~DagV~C~~~~~~--c--------~~~~~~~C~~~~ci~~~~~Cdg~~dC~ 230 (565)
T 2xrc_A 162 ECLHVHCRGLETSLAECT-FTKRRTMGYQDFADVVCYTQKAD--S--------PMDDFFQCVNGKYISQMKACDGINDCG 230 (565)
T ss_dssp CCBEEECCSCCSCGGGSE-EECCCCCSSCCCCEEEBCCC-------------------CBCTTSCBCCTTSTTSSSCCSS
T ss_pred eEEEeEeCCccCchhhcc-cCcccccccccCCceeccccccC--C--------CCcCeeECCCCCccCHHHcCCCcccCC
Confidence 4456777655 47787 55688889999999999876543 4 345679999999999999999999999
Q ss_pred CCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCCCCCCCCCCCCcCCc
Q psy5806 86 LGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCP 161 (1332)
Q Consensus 86 DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~dC~dg~de~d~~~C~ 161 (1332)
|+|||.+|.. |.+. +|+|.+ + .|++..++|||..||.||+|| ..|.
T Consensus 231 d~sDE~~C~~-c~~~-~~~C~~------------------------~-~C~~~~~~cdG~~dC~~gsDE---~~C~ 276 (565)
T 2xrc_A 231 DQSDELCCKA-CQGK-GFHCKS------------------------G-VCIPSQYQCNGEVDCITGEDE---VGCA 276 (565)
T ss_dssp SSSSSSSBSS-CSSS-CEEETT------------------------T-EEECGGGTTSSSCCSSSCTTS---SSCC
T ss_pred CCcccccccc-cCCC-ceecCC------------------------C-cccCccccCCCcccCCCCccc---cCcC
Confidence 9999999976 9887 899976 3 499999999999999999998 5675
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.9e-10 Score=130.38 Aligned_cols=215 Identities=9% Similarity=0.027 Sum_probs=145.6
Q ss_pred cceEEEEEeCCCcEEEEEeCC--CC--eEEEEECCCCCCceeE------eecCCCCceeeEEEecCCeEEEEcCC-----
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMR--SG--NLRTFDMSDSTRIKPI------PLMNDTIRDNFVIDWVANNIYYIDSQ----- 1109 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~--~~--~I~~~~l~~g~~~~~i------~~~~~~~p~glAvDw~~~~LY~td~~----- 1109 (1332)
..|.+|++++. +++|++... .+ +|..++ + |... .+ ....+..|.||++|.. ++|||+|..
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~-g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-Q-DGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-T-TEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTS
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-C-CCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCC
Confidence 35889999976 468998642 23 788777 3 4211 00 1123568999999964 789999976
Q ss_pred CceEEEEeeC-CceEEEEe--c----CCCCceEEEEcCCCcEEEEEec---CCCCCCCCCcEEEEecCCCceEEEEec--
Q psy5806 1110 MHTINVARSD-GQHKKILV--N----DLMEPLAIAVYPRRGLLFYSHW---GLYDNSPTTKIEKVYLDGSYRTVLVEE-- 1177 (1332)
Q Consensus 1110 ~~~I~v~~ld-G~~~~~~~--~----~~~~P~~iavdp~~g~Lywtd~---~~~~~~~~~~I~r~~ldG~~~~~l~~~-- 1177 (1332)
..+|.+++++ |+....+. . ....|.+|+|||..|++|+++. +. ..|.+.+++......++..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~------~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK------AALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG------CEEEEEETTTCCEEEECTTCT
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC------CeEEEEECCCCCEEEEecCCC
Confidence 4789999987 55343322 1 1246899999998899999997 43 5788888753332222210
Q ss_pred ------------C---------------CCCcceEEEecCCCEEEEEEcCCCeEEEEecC----CC--ce------EEEE
Q psy5806 1178 ------------D---------------LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF----GR--SR------KIVI 1218 (1332)
Q Consensus 1178 ------------~---------------l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d----G~--~~------~~~~ 1218 (1332)
+ ...|+||+++++++.||+++...++|++++.+ +. .+ ..+-
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 0 02479999999999999999998899999863 21 11 1111
Q ss_pred eecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC-CCCeeeEEE
Q psy5806 1219 SKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN-QEDFLNIKA 1279 (1332)
Q Consensus 1219 ~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~ 1279 (1332)
....|.||++ +.++.||++++..++|.+++..+| .-.++.... ...|.+|.+
T Consensus 246 ~~g~pdgia~------d~~G~l~va~~~~~~V~~~d~~~G---~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 246 EKPICDGISI------DKDHNIYVGDLAHSAIGVITSADR---AYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp ECCSCSCEEE------CTTCCEEEEEGGGTEEEEEETTTT---EEEEEEECGGGSCEEEEEE
T ss_pred cCCCCceEEE------CCCCCEEEEccCCCeEEEEECCCC---CEEEEEECCceecCCeeEE
Confidence 2458999999 457899999999999999998556 322333222 455666643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-09 Score=119.82 Aligned_cols=194 Identities=7% Similarity=-0.078 Sum_probs=141.0
Q ss_pred ceEEEEEeCCCcEEEEEeC--CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1046 SSIFFDYHYSKNLIYFADM--RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~--~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
.+.||+|++. ++||++.. ..+.|+.+++.+|.-...+.......++|++++ ++.||+++...+.+.+++.+ ++.
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 4689999976 69999975 367999999886554444432223356778887 89999999999999999987 343
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----CCCCcceEEEecCCCEEEEE
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----DLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~p~glaiD~~~~~LY~~ 1197 (1332)
...+..+ .|.++.+.+..++||.++ +. ++|..++........-+.. .+..|++|.+. +++||.+
T Consensus 99 ~~~i~~g--~~~g~glt~Dg~~l~vs~-gs------~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn 167 (266)
T 2iwa_A 99 IKNFTHQ--MKDGWGLATDGKILYGSD-GT------SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWAN 167 (266)
T ss_dssp EEEEECC--SSSCCEEEECSSSEEEEC-SS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred EEEEECC--CCCeEEEEECCCEEEEEC-CC------CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEe
Confidence 3335433 355555666577999998 44 6899998877554333332 23468899887 5699999
Q ss_pred EcCCCeEEEEecCCCceEEEEe---e------------cccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS---K------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~---~------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
....+.|.++|.........+. . ..|.|||+ ++.+++||+|....++|+.++....
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~-----~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW-----DQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE-----ETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEE-----cCCCCEEEEECCCCCeEEEEEEecc
Confidence 9889999999997544333333 1 36789999 5567899999999999999987543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-10 Score=130.40 Aligned_cols=204 Identities=11% Similarity=0.083 Sum_probs=141.6
Q ss_pred cCCc-cceEEEEEeCCCcEEEEEe------------CCCCeEEEEECCCCCCc-eeEeecC------CCCceeeEEEec-
Q psy5806 1041 FPEY-MSSIFFDYHYSKNLIYFAD------------MRSGNLRTFDMSDSTRI-KPIPLMN------DTIRDNFVIDWV- 1099 (1332)
Q Consensus 1041 i~~~-~~~~~id~d~~~~~lY~sd------------~~~~~I~~~~l~~g~~~-~~i~~~~------~~~p~glAvDw~- 1099 (1332)
|+++ ..+.+|++++ ++.+|.+. ...|.|++++++..+.. +.+...+ ..+|.||.+...
T Consensus 45 i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 45 VKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred eCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 4442 4577888877 57888886 25788999998732222 2222223 248999999652
Q ss_pred --CCeEEEEcCC--CceEEEEeeC--CceEEEEe----cCCCCceEEEEcCCCcEEEEEecCCCC-----------CCCC
Q psy5806 1100 --ANNIYYIDSQ--MHTINVARSD--GQHKKILV----NDLMEPLAIAVYPRRGLLFYSHWGLYD-----------NSPT 1158 (1332)
Q Consensus 1100 --~~~LY~td~~--~~~I~v~~ld--G~~~~~~~----~~~~~P~~iavdp~~g~Lywtd~~~~~-----------~~~~ 1158 (1332)
+.+||+++.. ..+|++++++ +.....+. ..+..|+++++++ .|.+|+++..-+. ..+.
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence 3369999877 5688888876 33333232 2567899999999 7888888742111 1235
Q ss_pred CcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC--C--ceEEEEe-ecccceEEEecCCc
Q psy5806 1159 TKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG--R--SRKIVIS-KVAPYGLSVRQSPG 1233 (1332)
Q Consensus 1159 ~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG--~--~~~~~~~-~~~P~glav~~~~~ 1233 (1332)
++|+|++.. ..+++ ..++..||||+++++++.||++|+..++|+++++++ + +++++ . ...|.||++
T Consensus 203 g~vyr~d~~--~~~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~v----- 273 (355)
T 3sre_A 203 SFVTYYSPN--DVRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISV----- 273 (355)
T ss_dssp EEEEEECTT--CCEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEE-----
T ss_pred cEEEEEECC--eEEEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEE-----
Confidence 789998773 34443 457899999999999999999999999999999974 3 23344 5 788999999
Q ss_pred ccc-ccEEEEEE-CCCCEEEEEEec
Q psy5806 1234 KAF-IVELYWTD-WEAMSVVIAREK 1256 (1332)
Q Consensus 1234 ~~~-~~~lYwtd-~~~~~V~~~~~~ 1256 (1332)
|. +|.||++. |...+|.++++.
T Consensus 274 -D~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 274 -DPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp -CTTTCCEEEEEESCHHHHHSCCTT
T ss_pred -eCCCCcEEEEecCCceEEEEECCC
Confidence 44 48999955 665566655544
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-12 Score=156.84 Aligned_cols=72 Identities=33% Similarity=0.738 Sum_probs=64.8
Q ss_pred CCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 17 ~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
..+|+|. ++.||+..|+|||..||.|||||.+|. .|.+.+|+|.++.||+..++|||..||.|||||.+|..
T Consensus 206 ~~~~~C~-~~~ci~~~~~Cdg~~dC~d~sDE~~C~------~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~ 277 (565)
T 2xrc_A 206 DDFFQCV-NGKYISQMKACDGINDCGDQSDELCCK------ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277 (565)
T ss_dssp ---CBCT-TSCBCCTTSTTSSSCCSSSSSSSSSBS------SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC-
T ss_pred cCeeECC-CCCccCHHHcCCCcccCCCCccccccc------ccCCCceecCCCcccCccccCCCcccCCCCccccCcCC
Confidence 4459998 899999999999999999999999992 39999999999999999999999999999999988854
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-09 Score=122.90 Aligned_cols=203 Identities=10% Similarity=0.067 Sum_probs=142.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee---cC--------CCCceeeEEEecCCeEEEEcCCCce
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---MN--------DTIRDNFVIDWVANNIYYIDSQMHT 1112 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---~~--------~~~p~glAvDw~~~~LY~td~~~~~ 1112 (1332)
...|.++++++.++.||+++...+.|..++++.......+.. .+ ...|.++++++.++ ||+++...+.
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~ 163 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDK 163 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCE
Confidence 346789999999999999998888898888752222222211 11 12477899998888 9999999999
Q ss_pred EEEEeeC--CceEEE--Ee-cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC--CceEEE--EecCC----
Q psy5806 1113 INVARSD--GQHKKI--LV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG--SYRTVL--VEEDL---- 1179 (1332)
Q Consensus 1113 I~v~~ld--G~~~~~--~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG--~~~~~l--~~~~l---- 1179 (1332)
|.+++++ |+.... +. .....|++++++|...+||+++... ..|...+++. .....+ +....
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS------SQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 9999997 433322 11 2234799999999777799998665 5666666653 222221 11111
Q ss_pred --CCcceEEEecCCCEEEEEEcCCCeEEEEecCCC-ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1180 --AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR-SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1180 --~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~-~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
..|.+++++++++.||+++...+.|..++++.. ..+.+.. ...|.+|++ ++++.+||+++...+.|..
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-----spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-----DPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-----CTTSSEEEEEETTTTEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-----CCCCCEEEEEEcCCCcEEE
Confidence 347789999999999999998999999988622 2222222 457999999 5567789999998888776
Q ss_pred E--EecCC
Q psy5806 1253 A--REKSD 1258 (1332)
Q Consensus 1253 ~--~~~~g 1258 (1332)
+ +..+|
T Consensus 313 ~~~d~~tg 320 (347)
T 3hfq_A 313 YARDLTSG 320 (347)
T ss_dssp EEECTTTC
T ss_pred EEEeCCCC
Confidence 6 54555
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-09 Score=122.12 Aligned_cols=245 Identities=11% Similarity=0.039 Sum_probs=162.8
Q ss_pred CCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEe-CCEEEEEeCCCCEEE
Q psy5806 860 DGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVL-DYYVYWTDVQHSKIY 938 (1332)
Q Consensus 860 dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~-~~~iywtD~~~~~i~ 938 (1332)
.+...+.+.....++.|.+.|.++ +.|||+|...+.|.+.+.+|. .+.+......|.++++. ++.||+++...+.|.
T Consensus 33 ~~~~~~~l~~~~~~~egp~~~~~g-~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 33 GDARLLTLYDQATWSEGPAWWEAQ-RTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGG-TEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCceEEEecCCcCccCCeEeCCC-CEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 455556677778899999999998 889999999999999998765 44454556778999988 568888888878887
Q ss_pred EEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEE
Q psy5806 939 RANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYT 1018 (1332)
Q Consensus 939 ~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~ 1018 (1332)
+.++. |+... +...
T Consensus 111 ~~~~~-g~~~~----------~~~~------------------------------------------------------- 124 (305)
T 3dr2_A 111 RSDAD-GQAHL----------LVGR------------------------------------------------------- 124 (305)
T ss_dssp EECTT-SCEEE----------EECE-------------------------------------------------------
T ss_pred EECCC-CCEEE----------EEec-------------------------------------------------------
Confidence 76543 31000 0000
Q ss_pred eecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC-----------------CCCeEEEEECCCCCCce
Q psy5806 1019 SRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM-----------------RSGNLRTFDMSDSTRIK 1081 (1332)
Q Consensus 1019 ~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~-----------------~~~~I~~~~l~~g~~~~ 1081 (1332)
... .....+.++++++. ++||++|. ..+.|++++..+|.. .
T Consensus 125 -~~~-------------------~~~~~~~~i~~d~d-G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~ 182 (305)
T 3dr2_A 125 -YAG-------------------KRLNSPNDLIVARD-GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-Q 182 (305)
T ss_dssp -ETT-------------------EECSCCCCEEECTT-SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-E
T ss_pred -cCC-------------------CccCCCCCEEECCC-CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-E
Confidence 000 00011223334432 23555432 124566666542322 2
Q ss_pred eEeecCCCCceeeEEEecCCeEEEEcCCC-----ceEEEEeeCCce---EEEE-ecCCCCceEEEEcCCCcEEEEEecCC
Q psy5806 1082 PIPLMNDTIRDNFVIDWVANNIYYIDSQM-----HTINVARSDGQH---KKIL-VNDLMEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1082 ~i~~~~~~~p~glAvDw~~~~LY~td~~~-----~~I~v~~ldG~~---~~~~-~~~~~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
.+. ....|.|||++..++.|||++... ++|.++++++.. ..++ ......|.+|++|+ .|.||.+..+
T Consensus 183 ~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~~~- 258 (305)
T 3dr2_A 183 RMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSSGT- 258 (305)
T ss_dssp EEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECCSS-
T ss_pred EEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEecCC-
Confidence 222 566899999999999999999873 789999987532 2222 22345799999998 6778888733
Q ss_pred CCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec
Q psy5806 1153 YDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209 (1332)
Q Consensus 1153 ~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~ 1209 (1332)
.|.+.+.+|.....+-.. ..|..+++++++++||++.. +.|.++++
T Consensus 259 -------gv~~~~~~g~~~~~~~~~--~~~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 259 -------GVCVFDSDGQLLGHIPTP--GTASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp -------EEEEECTTSCEEEEEECS--SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred -------cEEEECCCCCEEEEEECC--CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 499999998766555432 25889999988889999865 47877764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-09 Score=122.40 Aligned_cols=218 Identities=11% Similarity=-0.008 Sum_probs=156.2
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCe
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANN 1102 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~ 1102 (1332)
|+.++++...... ..+. +..++ ++++++.++.||+++...+.|+.+++.++....... .....|.. +++++.++.
T Consensus 22 v~~~d~~~~~~~~-~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~ 97 (331)
T 3u4y_A 22 ISFFSTDTLEILN-QITL-GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQF 97 (331)
T ss_dssp EEEEETTTCCEEE-EEEC-CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSE
T ss_pred EEEEeCcccceee-eEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCE
Confidence 7777765433211 1222 34456 999999999999999888999999987554312222 33456777 999999999
Q ss_pred EEEEcCCCc--eEEEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCc-EEEEecCCCceE-----E
Q psy5806 1103 IYYIDSQMH--TINVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTK-IEKVYLDGSYRT-----V 1173 (1332)
Q Consensus 1103 LY~td~~~~--~I~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~-I~r~~ldG~~~~-----~ 1173 (1332)
||.++...+ .|.+++++.... ..+. ....|.+++++|...+||+++.+. .. |...+++..... .
T Consensus 98 l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 98 AVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp EEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEE
T ss_pred EEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCc
Confidence 995444334 899999975443 3343 336799999999777899998765 44 555555432221 1
Q ss_pred EEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCce---EEEEe-ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1174 LVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR---KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1174 l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~---~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
.+. .-..|.++++++++++||++....+.|..+|++.... ...+. ...|.+|++ ++.+.+||+++...+.
T Consensus 171 ~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 171 FIS-GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV-----SRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEC-SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEE-----CTTSSEEEEECSSEEE
T ss_pred ccc-CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEE-----CCCCCEEEEEEcCCCE
Confidence 222 2356999999999999999999999999999974433 22333 788999999 4567789999998899
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
|..++..++
T Consensus 245 i~~~d~~~~ 253 (331)
T 3u4y_A 245 VFNFNQLSG 253 (331)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998877
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-12 Score=135.53 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=64.5
Q ss_pred cCCCCCceecC-CCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcc
Q psy5806 13 LQEIPQYKKCN-RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDER 91 (1332)
Q Consensus 13 ~~c~~~~f~C~-~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~ 91 (1332)
..|.+.+|+|. .+|+|||..|+|||..||.|||||.+| ....|.+.+|+|. + ++ ..|.+.+||.
T Consensus 53 ~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C----~~~~C~~~~F~c~-----~-----~~-~~C~~~~~~~ 117 (215)
T 2gtl_O 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC----TLPTKAGDKFIGD-----V-----CF-DHCTKRRPEH 117 (215)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC----CCSSCTTCEEEEE-----E-----EE-ESSCSSCCSE
T ss_pred CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCC----CCCCcCCCceeee-----E-----CC-CcccCCCCCC
Confidence 46999999994 389999999999999999999999999 4568999999983 2 22 3488899999
Q ss_pred cccccCCC--CCccccCC
Q psy5806 92 NCNKTCDA--QKEFSCMK 107 (1332)
Q Consensus 92 ~C~~~C~~--~~~~~C~~ 107 (1332)
.|...|.. . +|+|..
T Consensus 118 ~c~~~~s~~~~-~~fc~~ 134 (215)
T 2gtl_O 118 MTLAFESSSIA-AFFTPI 134 (215)
T ss_dssp EEEEEEEEEEC-TTCTTE
T ss_pred ceeeeeccccc-cccCCC
Confidence 88766653 3 688876
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-08 Score=113.01 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=158.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+.+++|++.+++||++....+.|+.+++.++.....+ .....+.+++++..++.||++....+.|.++++... ...
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 46788999999999999888899999998744332222 234578999999989999999988899999998744 333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCC
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNK 1202 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~ 1202 (1332)
.+.. ...|..++++|...+||++.... +.|...++........+.. -..|.++++++++++||.+.. ..+
T Consensus 153 ~~~~-~~~~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 153 TVSV-GRSPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEC-CSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEec-CCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCC
Confidence 3433 36789999999888899887654 6799999877665555543 356889999999999999986 678
Q ss_pred eEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1203 RIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|...|+........+. ...|.++++ ++.+.+||++....+.|...+..++ .....+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~~s~~~d~~v~v~d~~~~---~~~~~~~ 283 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGPDPAGIAV-----TPDGKKVYVALSFXNTVSVIDTATN---TITATMA 283 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSSEEEEEE-----CTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE
T ss_pred cEEEEECCCCeEEEEEecCCCccEEEE-----ccCCCEEEEEcCCCCEEEEEECCCC---cEEEEEE
Confidence 99999997554444444 667888988 4457789999999999999999887 5544443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.2e-10 Score=130.06 Aligned_cols=212 Identities=11% Similarity=0.109 Sum_probs=143.1
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE------eecCCCCceeeEEEec---CCeEEEEcCC----
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI------PLMNDTIRDNFVIDWV---ANNIYYIDSQ---- 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i------~~~~~~~p~glAvDw~---~~~LY~td~~---- 1109 (1332)
++..|.+|++++.+++||+++. .++|++++.+ |...+.+ ...+.+.|.|||+++. ++.||+++..
T Consensus 16 ~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLITLR-GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp EESSEEEEEECSTTCCEEEEET-TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 4667999999997654999995 5899999843 4322211 1234457899999985 8999999754
Q ss_pred ---CceEEEEeeCCc-----eEEEEecC-------CCCceEEEEcCCCcEEEEEecCCCC-------CCCCCcEEEEecC
Q psy5806 1110 ---MHTINVARSDGQ-----HKKILVND-------LMEPLAIAVYPRRGLLFYSHWGLYD-------NSPTTKIEKVYLD 1167 (1332)
Q Consensus 1110 ---~~~I~v~~ldG~-----~~~~~~~~-------~~~P~~iavdp~~g~Lywtd~~~~~-------~~~~~~I~r~~ld 1167 (1332)
.++|.++++++. ..+++... ...|.+|+++| .|+||++...... +...++|.|++.|
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 457877777642 23333222 23488999999 7899999733200 1224689999999
Q ss_pred CCc------------eEEEEecCCCCcceEEEecCCCEEEEEEcCCC---eEEEEecCCCc-------------------
Q psy5806 1168 GSY------------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNK---RIEYCDFFGRS------------------- 1213 (1332)
Q Consensus 1168 G~~------------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~---~I~~~d~dG~~------------------- 1213 (1332)
|+. ...++..++..|.||++|+++++||++|...+ +|.++.. |.+
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCCCCCCCccCc
Confidence 972 23355567888999999998899999998754 4544322 211
Q ss_pred ---------eE--EEEe-ecccceEEEec-CCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1214 ---------RK--IVIS-KVAPYGLSVRQ-SPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1214 ---------~~--~~~~-~~~P~glav~~-~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.. .... ...|.||++.. .---++++.||++++..++|.+++..++
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~ 309 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD 309 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence 00 0011 34688999910 0000246899999999999999998865
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-09 Score=128.92 Aligned_cols=232 Identities=13% Similarity=-0.010 Sum_probs=148.6
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeec------CC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLM------ND 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~------~~ 1088 (1332)
|..|+++ ...++..|+....| +|++++.+++||+++. ..+.|..+++.++.....+... ..
T Consensus 101 VsVID~~---t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 101 QFVIDGS---TGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEETT---TTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred EEEEECC---CCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 5556554 33444455545568 9999999999999985 3568999997754444334321 02
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEEEeeCCce-EEEEecC---CCCceE----EEEcCCCcEEEEEecCC-------
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQH-KKILVND---LMEPLA----IAVYPRRGLLFYSHWGL------- 1152 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~~-~~~~~~~---~~~P~~----iavdp~~g~Lywtd~~~------- 1152 (1332)
..|.+++++..++.||+++.. .+.|.++|+.... ...+..+ ...|.+ +++.+....+|++....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~ 256 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT 256 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence 479999999999999999875 6789999997443 2223221 112223 56665333333332110
Q ss_pred --CC------------C---------CCCCcEEEEecCCCceEEEEecCC---------CCcce---EEEecCCCEEEEE
Q psy5806 1153 --YD------------N---------SPTTKIEKVYLDGSYRTVLVEEDL---------AFPNE---LAIDFKQRRLFWA 1197 (1332)
Q Consensus 1153 --~~------------~---------~~~~~I~r~~ldG~~~~~l~~~~l---------~~p~g---laiD~~~~~LY~~ 1197 (1332)
+. . ...++|+.+++.+....++-.-.+ ..|.| +++++++++||++
T Consensus 257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa 336 (426)
T 3c75_H 257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL 336 (426)
T ss_dssp CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence 00 0 001235555554433322111000 12555 8999999999999
Q ss_pred EcC---------CCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEEecCCCCcceEEE
Q psy5806 1198 DST---------NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAREKSDTGQWDVHL 1266 (1332)
Q Consensus 1198 d~~---------~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~~~~g~~~~~~~~ 1266 (1332)
+.. .+.|..+|.....+..-+. +..|.+|++ ++++. +||.+++.++.|..+|..++ +.+..
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~-----spDg~~~lyv~n~~s~~VsVID~~t~---kvv~t 408 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINV-----SQDAEPLLYALSAGTQTLHIYDAATG---EELRS 408 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE-----CCSSSCEEEEEETTTTEEEEEETTTC---CEEEE
T ss_pred ecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEE-----ccCCCEEEEEEcCCCCeEEEEECCCC---CEEEE
Confidence 752 4579999997655444445 678999999 55577 89999999999999999888 65555
Q ss_pred E
Q psy5806 1267 I 1267 (1332)
Q Consensus 1267 ~ 1267 (1332)
+
T Consensus 409 I 409 (426)
T 3c75_H 409 V 409 (426)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-08 Score=119.58 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=168.9
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeE
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNI 1103 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~L 1103 (1332)
|+..+++... ....+.....+.+++|++.++.||++....+.|+.+++.++.....+. ....+.++++++.++.|
T Consensus 14 v~v~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l 88 (391)
T 1l0q_A 14 ISVIDVTSNK---VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--AGSSPQGVAVSPDGKQV 88 (391)
T ss_dssp EEEEETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEE
T ss_pred EEEEECCCCe---EEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--CCCCccceEECCCCCEE
Confidence 7777665332 222334445688999999999999998888999999987544333332 23488999999999999
Q ss_pred EEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcc
Q psy5806 1104 YYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN 1183 (1332)
Q Consensus 1104 Y~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~ 1183 (1332)
|++....+.|.++++..............|.+++++|...+||++.... +.|...++........+... ..|.
T Consensus 89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~-~~~~ 161 (391)
T 1l0q_A 89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVG-RSPK 161 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECC-SSEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecC-CCcc
Confidence 9999888899999998544433223346799999999888899998655 68999998766555555433 6689
Q ss_pred eEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCCCC
Q psy5806 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSDTG 1260 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g~~ 1260 (1332)
+++++++++.||++....+.|...|+........+. ...|.++++ .+.+.+||.+.. ..+.|...+..++
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~~~~~~~v~~~d~~~~-- 234 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV-----NPEGTKAYVTNVDKYFNTVSMIDTGTN-- 234 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE-----CTTSSEEEEEEECSSCCEEEEEETTTT--
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE-----CCCCCEEEEEecCcCCCcEEEEECCCC--
Confidence 999999999999999889999999997655444444 667888888 445778999987 7899999998777
Q ss_pred cceEEEEe
Q psy5806 1261 QWDVHLIR 1268 (1332)
Q Consensus 1261 ~~~~~~~~ 1268 (1332)
.....+.
T Consensus 235 -~~~~~~~ 241 (391)
T 1l0q_A 235 -KITARIP 241 (391)
T ss_dssp -EEEEEEE
T ss_pred -eEEEEEe
Confidence 4444444
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-12 Score=113.37 Aligned_cols=67 Identities=24% Similarity=0.346 Sum_probs=57.1
Q ss_pred ccccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCC---CCCCCCCCCCCCCCEEecC--CCEEEeeeecC
Q psy5806 10 VGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMK---CPQASPPKKCSPDEHRCTT--GHCILKTWLCD 79 (1332)
Q Consensus 10 ~~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~---C~~~~~~~~C~~~~f~C~~--g~Ci~~~~~CD 79 (1332)
|....|.+++|+|.+++.|||..|+|||+.||.|||||.. |+ ...+|.+.+|+|.+ +.||+....+.
T Consensus 4 C~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~---~~~~C~~~~f~c~~~~~~ci~~~~~gL 75 (80)
T 2kny_A 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL---YNSTGSGSGSGSTEELRVRLASHLRKL 75 (80)
T ss_dssp CSSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCS---SSSTTTTCSSCHHHHHHHHTTTTTTTT
T ss_pred CCCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCC---CCcccCcccchhhhHHHHHHHHHHHHH
Confidence 6677899999999867899999999999999999999984 62 24689999999998 68888766544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-09 Score=124.47 Aligned_cols=231 Identities=13% Similarity=0.106 Sum_probs=150.5
Q ss_pred EEEEeecceEEEEeCCCCCCCCcc-cc---cCCccceEEEEEeCC---CcEEEEEeCC-------CCeEEEEECCCCC--
Q psy5806 1015 LLYTSRFGVIRRISLDTADLLPVT-LP---FPEYMSSIFFDYHYS---KNLIYFADMR-------SGNLRTFDMSDST-- 1078 (1332)
Q Consensus 1015 ll~~~~~~~i~~i~l~~~~~~~~~-~p---i~~~~~~~~id~d~~---~~~lY~sd~~-------~~~I~~~~l~~g~-- 1078 (1332)
|+++.+...|+++..+......+. .| ..+...+.+|++++. +++||+++.. ..+|.+++++.+.
T Consensus 32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~ 111 (353)
T 2g8s_A 32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK 111 (353)
T ss_dssp EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence 555554433777764322111000 11 123346789999996 8999999764 3579998876432
Q ss_pred --CceeEeec------CCCCceeeEEEecCCeEEEEcCC-------------CceEEEEeeCCc-------------eEE
Q psy5806 1079 --RIKPIPLM------NDTIRDNFVIDWVANNIYYIDSQ-------------MHTINVARSDGQ-------------HKK 1124 (1332)
Q Consensus 1079 --~~~~i~~~------~~~~p~glAvDw~~~~LY~td~~-------------~~~I~v~~ldG~-------------~~~ 1124 (1332)
..++++.. ....+.+|++++. ++||++... .++|.+++.||+ ..+
T Consensus 112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~ 190 (353)
T 2g8s_A 112 VTDFRTVFRQMPKLSTGNHFGGRLVFDGK-GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE 190 (353)
T ss_dssp EEEEEEEEECSSCCBSSSCCCCCEEECSS-SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT
T ss_pred CCceEEEEEECCCCCCCcccCccEEECCC-CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc
Confidence 23333321 2345889999974 599999633 357989999987 344
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC----------------------------ceEEEEe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS----------------------------YRTVLVE 1176 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~----------------------------~~~~l~~ 1176 (1332)
+...++..|.+|++||..|.||++|.+.. ....|.++...+. ...+..-
T Consensus 191 i~a~G~rnp~gl~~d~~~g~l~~~d~g~~---~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 267 (353)
T 2g8s_A 191 IWSYGIRNPQGMAMNPWSNALWLNEHGPR---GGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYW 267 (353)
T ss_dssp EEEECCSEEEEEEEETTTTEEEEEEECSB---SCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEE
T ss_pred EEEEcCcCccceEEECCCCCEEEEecCCC---CCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEe
Confidence 55568889999999998999999998751 1123444432111 0000000
Q ss_pred cCCCCcceEEEecC------CCEEEEEEcCCCeEEEEecCCCce---EEEEe--ecccceEEEecCCccccccEEEEE-E
Q psy5806 1177 EDLAFPNELAIDFK------QRRLFWADSTNKRIEYCDFFGRSR---KIVIS--KVAPYGLSVRQSPGKAFIVELYWT-D 1244 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~------~~~LY~~d~~~~~I~~~d~dG~~~---~~~~~--~~~P~glav~~~~~~~~~~~lYwt-d 1244 (1332)
..-..|.|+++... .+.||+++...++|.++++++... +.++. ...|.+|++ +.++.||++ |
T Consensus 268 ~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~------~pdG~lyv~td 341 (353)
T 2g8s_A 268 KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT------GPDGYLYVLTD 341 (353)
T ss_dssp SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE------CTTSCEEEEEC
T ss_pred CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE------CCCCcEEEEEe
Confidence 11235889999743 479999999999999999986421 22232 468999999 456789996 6
Q ss_pred CCCCEEEEEEe
Q psy5806 1245 WEAMSVVIARE 1255 (1332)
Q Consensus 1245 ~~~~~V~~~~~ 1255 (1332)
..+++|+|+.+
T Consensus 342 ~~~g~I~ri~~ 352 (353)
T 2g8s_A 342 ESSGELLKVSP 352 (353)
T ss_dssp STTEEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 78899999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-07 Score=114.32 Aligned_cols=346 Identities=9% Similarity=0.019 Sum_probs=217.4
Q ss_pred EEeCCCCeEEEEecccCcCCCCceEEEecC-CCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC---CCc
Q psy5806 831 VVHYGLGLMVWADWSRTRLTNNRIEMAHMD-GTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA---TGR 906 (1332)
Q Consensus 831 avdp~~g~lywtd~g~~~~~~~~I~r~~~d-G~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d---G~~ 906 (1332)
+++|. |++|++..... +|...+.+ |.-...+.... .|.+++++.++ ++||.++.. +.|..+|++ +.-
T Consensus 144 ~~~p~-~~~~vs~~~d~-----~V~v~D~~t~~~~~~i~~g~-~~~~v~~spdg-~~l~v~~~d-~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAG-----QIALVDGDSKKIVKVIDTGY-AVHISRMSASG-RYLLVIGRD-ARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGG-GEEEEEEGGGT-----EEEEEETTTCCEEEEEECST-TEEEEEECTTS-CEEEEEETT-SEEEEEETTSSSCEE
T ss_pred ccCCC-CEEEEEEcCCC-----eEEEEECCCceEEEEEecCc-ccceEEECCCC-CEEEEECCC-CeEEEEECcCCCCcE
Confidence 36664 78888886544 56655443 22222222222 27899999999 999999977 999999993 222
Q ss_pred eeEEeccCCcceEEEEe------CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCc
Q psy5806 907 AKRAYAVQSHPYTLTVL------DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCS 980 (1332)
Q Consensus 907 ~~~l~~~~~~P~~la~~------~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCs 980 (1332)
...+ .....|.++++. +.+||.+....++|...+..+++.
T Consensus 215 ~~~i-~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~--------------------------------- 260 (543)
T 1nir_A 215 VAEI-KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP--------------------------------- 260 (543)
T ss_dssp EEEE-ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE---------------------------------
T ss_pred EEEE-ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc---------------------------------
Confidence 2222 245678888875 347777766556654433222211
Q ss_pred cccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEE
Q psy5806 981 HLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIY 1060 (1332)
Q Consensus 981 hlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY 1060 (1332)
+..++........ .....-..+.++.+++.++.+|
T Consensus 261 -------------------------------------------~~~i~~~g~~~~~--~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 261 -------------------------------------------KQIVSTRGMTVDT--QTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -------------------------------------------EEEEECCEECSSS--CCEESCCCEEEEEECSSSSEEE
T ss_pred -------------------------------------------ceeecccCcccCc--cccccCCceEEEEECCCCCEEE
Confidence 1111110000000 0000011357788888888999
Q ss_pred EEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecC-CCCc-eEEE
Q psy5806 1061 FADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVND-LMEP-LAIA 1137 (1332)
Q Consensus 1061 ~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~-~~~P-~~ia 1137 (1332)
++....++|..+++.++....+........|.++++|+.++.||++....+.|.++++. |+....+..+ ..+| +++.
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 99988999999998754433321212345799999999999999999888899999987 4444444332 1223 3444
Q ss_pred -EcCCCcEEEEEecCCCCCCCCCcEEEEecCC-------CceEEEEecCCCCcceEEEecCCCEEEEEEc------CCCe
Q psy5806 1138 -VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG-------SYRTVLVEEDLAFPNELAIDFKQRRLFWADS------TNKR 1203 (1332)
Q Consensus 1138 -vdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG-------~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~------~~~~ 1203 (1332)
++|..|.+|.+.... ...|...+++. -.....+...-..+..+++.+++++||.... ..+.
T Consensus 376 ~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred cCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 478779999887522 25788888865 2222233322234567999999999998652 1458
Q ss_pred EEEEecCCCc-e-EEE-E------e--ecccceEEEecCCccccccEEEEEEC----CCCEEEEEEecCCCCcceEEEEe
Q psy5806 1204 IEYCDFFGRS-R-KIV-I------S--KVAPYGLSVRQSPGKAFIVELYWTDW----EAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1204 I~~~d~dG~~-~-~~~-~------~--~~~P~glav~~~~~~~~~~~lYwtd~----~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
|..+|.+... . +++ + . ...+..+++ +..+.+||++.| ..+.|..+|..|+ +...++.
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~g~~~~~s~~~~~~~~~~i~v~D~~t~---~~~~~i~ 522 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY-----NKRGDEVWFSVWNGKNDSSALVVVDDKTL---KLKAVVK 522 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE-----CSSSSEEEEEEECCTTSCCEEEEEETTTT---EEEEEEC
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccC-----CCCCCEEEEEeecCCCCCCeEEEEECCCc---eEEEeec
Confidence 9999997433 3 333 1 1 567788888 667899999998 3699999999998 6666655
Q ss_pred c-CCCCeeeE
Q psy5806 1269 S-NQEDFLNI 1277 (1332)
Q Consensus 1269 ~-~~~~~~~i 1277 (1332)
. .+..|.++
T Consensus 523 ~~~~~~p~g~ 532 (543)
T 1nir_A 523 DPRLITPTGK 532 (543)
T ss_dssp CTTCCSEEEE
T ss_pred CCCccCCCee
Confidence 3 34445544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-08 Score=115.64 Aligned_cols=201 Identities=7% Similarity=0.010 Sum_probs=142.0
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE----eecC---------CCCceeeEEEecCCeEEEEcCCCc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI----PLMN---------DTIRDNFVIDWVANNIYYIDSQMH 1111 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i----~~~~---------~~~p~glAvDw~~~~LY~td~~~~ 1111 (1332)
..|..+++ .++.||+++...+.|..++++.......+ ...+ ...|.++++++.++.||+++...+
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 45778887 67789999988899999988632222111 1111 123578999999999999999889
Q ss_pred eEEEEeeCCce--------------EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE--
Q psy5806 1112 TINVARSDGQH--------------KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV-- 1175 (1332)
Q Consensus 1112 ~I~v~~ldG~~--------------~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~-- 1175 (1332)
.|.+++++... ..........|++++++|...+||+++... ..|...+++......+.
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~------~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG------GTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------CEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC------CeEEEEEecCCceEEeEEE
Confidence 99999887322 111223346799999999777899998654 56777777643332222
Q ss_pred e---cCCCCcceEEEecCCCEEEEEEcC-CCeEEEEecC--CCceEEEEe---ecccceEEEecCCccccccEEEEEECC
Q psy5806 1176 E---EDLAFPNELAIDFKQRRLFWADST-NKRIEYCDFF--GRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1176 ~---~~l~~p~glaiD~~~~~LY~~d~~-~~~I~~~d~d--G~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
. .....|.+|+++++++.||+++.. .+.|..++++ ....+.+.. ...|.+|++ ++++.+||+++..
T Consensus 252 ~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~-----spdg~~l~~~~~~ 326 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFII-----TPNGKYLLVACRD 326 (361)
T ss_dssp ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEE-----CTTSCEEEEEETT
T ss_pred ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEE-----CCCCCEEEEEECC
Confidence 1 112447799999999999999988 8888888886 223333322 568999999 5567789999988
Q ss_pred CCEEEE--EEecCC
Q psy5806 1247 AMSVVI--AREKSD 1258 (1332)
Q Consensus 1247 ~~~V~~--~~~~~g 1258 (1332)
.+.|.. ++..+|
T Consensus 327 ~~~v~v~~~d~~~g 340 (361)
T 3scy_A 327 TNVIQIFERDQATG 340 (361)
T ss_dssp TTEEEEEEECTTTC
T ss_pred CCCEEEEEEECCCC
Confidence 888876 565565
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-07 Score=109.53 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=148.6
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC-------CCceEEEEe
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS-------QMHTINVAR 1117 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~-------~~~~I~v~~ 1117 (1332)
..+.+++|++.++.+|++....+.|+.+++.++.....+ .....|.++++++.++.||++.. ..+.|.+++
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT--DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC--CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe--cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 457899999999999999988899999998744322222 23456899999998999999874 356888999
Q ss_pred eCCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEE
Q psy5806 1118 SDGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1118 ldG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~ 1196 (1332)
+.... ...+. ....|.+++++|....||++.... +.|...+++.......+. ....|.+++++++++.||.
T Consensus 290 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 290 MDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp TTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred CCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEE
Confidence 87443 33332 224789999999777999997665 689999998655544444 3467899999999999999
Q ss_pred EEcCC--------------CeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1197 ADSTN--------------KRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1197 ~d~~~--------------~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+.... +.|...|+........+. ...|.++++ ++.+.+||.+....+.|...+..
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDV-----SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEE-----CTTSCEEEEEETTTTEEEEEEET
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEE-----cCCCCEEEEEECCCCeEEEEEec
Confidence 98764 489999986544444444 677899999 45677899998888899888754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.8e-09 Score=118.95 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=153.4
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-----EeecCCCCceeeEEEe---cCCeEEEEc--CCCc
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-----IPLMNDTIRDNFVIDW---VANNIYYID--SQMH 1111 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-----i~~~~~~~p~glAvDw---~~~~LY~td--~~~~ 1111 (1332)
.++..|.+|++.+.+ +||+++...++|++++.+++....+ +...+.+.|.|||+++ .++.||++. ...+
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 467789999999875 6999997789999998543332211 1124566899999997 378999964 3466
Q ss_pred eEEEEeeCCc--------eEEEEec-----CCCCceEEEEcCCCcEEEEEecCCC-------CCCCCCcEEEEecCCC--
Q psy5806 1112 TINVARSDGQ--------HKKILVN-----DLMEPLAIAVYPRRGLLFYSHWGLY-------DNSPTTKIEKVYLDGS-- 1169 (1332)
Q Consensus 1112 ~I~v~~ldG~--------~~~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~-------~~~~~~~I~r~~ldG~-- 1169 (1332)
+|.++.+++. ..+++.. ....+..|+++| .|+||++.-... -+...++|.|++.||+
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 8888887761 1233222 223467799999 789999952110 0123589999999998
Q ss_pred ------ceEEEEecCCCCcceEEEecCCCEEEEEEcCCC---eEEEEecCCCce---------------EEEEe----ec
Q psy5806 1170 ------YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK---RIEYCDFFGRSR---------------KIVIS----KV 1221 (1332)
Q Consensus 1170 ------~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~---~I~~~d~dG~~~---------------~~~~~----~~ 1221 (1332)
.. .++..++..|.||++|+ .++||++|.+.+ +|..+. .|.+- ..++. ..
T Consensus 187 ~~nPf~~~-~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGS-PVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTC-CEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCC-eEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 43 35666888999999998 589999998754 355443 34320 00111 14
Q ss_pred ccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC-CCCeeeEEE
Q psy5806 1222 APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN-QEDFLNIKA 1279 (1332)
Q Consensus 1222 ~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~ 1279 (1332)
.|.||++ +++.+|.+....++|.++....+......+.+..+ ..++.+|.+
T Consensus 264 ap~G~~~-------~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~ 315 (347)
T 3das_A 264 SPSGIAY-------AEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAP 315 (347)
T ss_dssp CEEEEEE-------ETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEE
T ss_pred CCcceEE-------EcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEE
Confidence 7899999 99999999999999999998765100112334433 356777765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=116.86 Aligned_cols=196 Identities=17% Similarity=0.105 Sum_probs=140.7
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE-eec----CCCCceeeEEEecCCeEEEEcCCC---------
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI-PLM----NDTIRDNFVIDWVANNIYYIDSQM--------- 1110 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~----~~~~p~glAvDw~~~~LY~td~~~--------- 1110 (1332)
..+.++++++.+++||+++.. +.|.+++.+ +... .+ ... ....|.+|++|. .++||+++...
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCB
T ss_pred CCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccc
Confidence 458899999886789999854 479999976 4322 22 111 123689999996 56899998754
Q ss_pred ------ceEEEEeeCCceEEEEecCCCCceEEEEc----CCCcEEEEEecCCCCCCCCCcEEEEecC--CCc--eEEEEe
Q psy5806 1111 ------HTINVARSDGQHKKILVNDLMEPLAIAVY----PRRGLLFYSHWGLYDNSPTTKIEKVYLD--GSY--RTVLVE 1176 (1332)
Q Consensus 1111 ------~~I~v~~ldG~~~~~~~~~~~~P~~iavd----p~~g~Lywtd~~~~~~~~~~~I~r~~ld--G~~--~~~l~~ 1176 (1332)
+.|.+++.+|+.... ...+..|.+|+++ |....||+++... .+|.+.+++ |.. ...+..
T Consensus 147 ~~~~~~~~l~~~~~~g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~------~~i~~~~~~~~g~~~~~~~~~~ 219 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPT------KKLWSYDIKGPAKIENKKVWGH 219 (314)
T ss_dssp TTSSSCEEEEEECTTSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTT------TEEEEEEEEETTEEEEEEEEEE
T ss_pred cccCCCCeEEEECCCCCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCC------CeEEEEECCCCCccccceEEEE
Confidence 578777777654433 3445689999999 9656899998765 689999876 321 112221
Q ss_pred --cCC-CCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEE
Q psy5806 1177 --EDL-AFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVV 1251 (1332)
Q Consensus 1177 --~~l-~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~ 1251 (1332)
... ..|.+|++|.+ ++||+++...+.|.++|.+ |.....+.. ...|.++++ ++.+.+||+++...+.|.
T Consensus 220 ~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~-----~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 220 IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF-----KPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE-----CTTSSEEEEEETTTTEEE
T ss_pred CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE-----CCCCCEEEEEeCCCCeEE
Confidence 111 56999999964 6899999888999999998 655444333 578999999 344556999999889999
Q ss_pred EEEecC
Q psy5806 1252 IAREKS 1257 (1332)
Q Consensus 1252 ~~~~~~ 1257 (1332)
+++...
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-06 Score=104.23 Aligned_cols=285 Identities=15% Similarity=0.117 Sum_probs=182.9
Q ss_pred CCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc------cccCceeEEeCCCCCeEEEEeCCCCeEE
Q psy5806 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE------VIWPSCLAIDYSDNPKLYWVDTSKHTIE 898 (1332)
Q Consensus 825 ~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~------l~~P~gl~iD~~~~~~lYw~d~~~~~I~ 898 (1332)
..|.+++++| .+.++.+.... .+|...+++.......... ...+.+++++..+ ++|++....+.|.
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVH 194 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEE
T ss_pred CCceEEEEeC-CCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEE
Confidence 5688999999 78888886433 3688887774333322211 3345568886544 8888888778898
Q ss_pred EEccCCCce-eEEeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCC
Q psy5806 899 YKTLATGRA-KRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSN 975 (1332)
Q Consensus 899 ~~~~dG~~~-~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~ 975 (1332)
..+++.... ..+......|.++++. +.++|.+....+.|...+..+++.+.
T Consensus 195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-------------------------- 248 (433)
T 3bws_A 195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-------------------------- 248 (433)
T ss_dssp EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------------
T ss_pred EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE--------------------------
Confidence 888875433 3333334556777776 45677777666666554433221100
Q ss_pred CCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCC
Q psy5806 976 NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYS 1055 (1332)
Q Consensus 976 nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~ 1055 (1332)
. ++....+.++++++.
T Consensus 249 --------------------------------------------------~--------------~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 249 --------------------------------------------------K--------------TDKIGLPRGLLLSKD 264 (433)
T ss_dssp --------------------------------------------------E--------------CCCCSEEEEEEECTT
T ss_pred --------------------------------------------------E--------------ecCCCCceEEEEcCC
Confidence 0 000112345555555
Q ss_pred CcEEEEEeC-------CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEe
Q psy5806 1056 KNLIYFADM-------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILV 1127 (1332)
Q Consensus 1056 ~~~lY~sd~-------~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~ 1127 (1332)
++.||.+.. ..+.|+.+++.++.....+. ....|.++++++.++.||++....+.|.+++++.... ..+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 555555543 24456666655332222221 1236889999988889999988889999999985433 3343
Q ss_pred cCCCCceEEEEcCCCcEEEEEecCCC--------CCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1128 NDLMEPLAIAVYPRRGLLFYSHWGLY--------DNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1128 ~~~~~P~~iavdp~~g~Lywtd~~~~--------~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
....|.+++++|...+||.+..+.. .....+.|+..++........+.. -..|.+++++++++.||.+..
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 4467999999998778999876430 000124799999866555555553 367899999999999999988
Q ss_pred CCCeEEEEecCC
Q psy5806 1200 TNKRIEYCDFFG 1211 (1332)
Q Consensus 1200 ~~~~I~~~d~dG 1211 (1332)
..+.|...++++
T Consensus 421 ~d~~i~v~~~~~ 432 (433)
T 3bws_A 421 LDHQIRVYRRDG 432 (433)
T ss_dssp TTTEEEEEEETT
T ss_pred CCCeEEEEEecC
Confidence 788999888875
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-11 Score=90.91 Aligned_cols=37 Identities=35% Similarity=0.827 Sum_probs=35.0
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.|.+.+|+|.+++.|||..|+|||+.||.|||||.+|
T Consensus 3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence 6899999998568999999999999999999999998
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-11 Score=88.53 Aligned_cols=37 Identities=49% Similarity=1.079 Sum_probs=34.7
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
.|.+.+|+|.+|+||+..|+|||..||.|||||.+|+
T Consensus 1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCCceEcCCCCeechhhccCCCCCCCCCccccCCC
Confidence 3788999999999999999999999999999999884
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-11 Score=88.61 Aligned_cols=36 Identities=33% Similarity=0.735 Sum_probs=34.4
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.+.+|+|. +|.|||..|+|||..||.|||||.+|
T Consensus 1 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 1 PCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCCTTCEECT-TSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCCceEcC-CCCeechhhccCCCCCCCCCccccCC
Confidence 5889999998 89999999999999999999999988
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-11 Score=129.36 Aligned_cols=62 Identities=31% Similarity=0.651 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEe--cCCCEEEeeeecCCCCCCCCCCCccccccc-CCCCCcccc
Q psy5806 37 NEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLCDGIPDCSLGEDERNCNKT-CDAQKEFSC 105 (1332)
Q Consensus 37 g~~DC~dgsDE~~C~~~~~~~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~-C~~~~~~~C 105 (1332)
+..+|.|+|||.+| ..|++++|+| .+|+|||..|+|||..||.|||||.+|+.. |.+. +|.|
T Consensus 39 ~~~~c~d~sDE~~C------~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~-~F~c 103 (215)
T 2gtl_O 39 KAGSLRHRVEELED------PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGD-KFIG 103 (215)
T ss_dssp HHHHHHHHHHHHSC------CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTC-EEEE
T ss_pred ccccCCcchhhccC------CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCC-ceee
Confidence 34689999999999 3699999999 799999999999999999999999999753 7766 7776
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-10 Score=93.13 Aligned_cols=39 Identities=33% Similarity=0.661 Sum_probs=36.0
Q ss_pred ccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
...|.+.+|+|.++++|||..|+|||+.||.|||||.+|
T Consensus 4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TCTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CCCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence 457999999996589999999999999999999999987
|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-11 Score=94.66 Aligned_cols=40 Identities=43% Similarity=1.002 Sum_probs=37.2
Q ss_pred CCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 55 PPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 55 ~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
.+..|++.+|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus 3 ~p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp CCCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCCCCCceECCCCCEEecCccCCCCCCCCCCCccccch
Confidence 3568999999999999999999999999999999999874
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=88.30 Aligned_cols=36 Identities=42% Similarity=0.948 Sum_probs=33.7
Q ss_pred CCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 15 EIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 15 c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
|++.+|+|.+ +++|||..|+|||..||.|||||.+|
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence 7889999984 48999999999999999999999998
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-10 Score=89.33 Aligned_cols=39 Identities=41% Similarity=0.952 Sum_probs=35.7
Q ss_pred CCCCCCCEEec-CCCEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 57 KKCSPDEHRCT-TGHCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 57 ~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
..|.+.+|+|. +|.||+..|+|||..||.|||||.+|..
T Consensus 2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~ 41 (42)
T 1cr8_A 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence 46889999998 4899999999999999999999999864
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-11 Score=93.41 Aligned_cols=39 Identities=36% Similarity=0.890 Sum_probs=35.0
Q ss_pred ccCCCCCceecCC----CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNR----TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~----~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+..|.+.+|+|.+ +++|||..|+|||..||.|||||.+|
T Consensus 4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 4679999999985 68999999999999999999999988
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=90.54 Aligned_cols=39 Identities=36% Similarity=0.864 Sum_probs=34.2
Q ss_pred CCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 56 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
...|.+.+|+|.+|+||+..|+|||..||.|||||.+|+
T Consensus 5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp ---CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence 457899999999999999999999999999999999985
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=89.28 Aligned_cols=39 Identities=33% Similarity=0.749 Sum_probs=36.1
Q ss_pred CCCCCCCCEEecC-CCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 56 PKKCSPDEHRCTT-GHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 56 ~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
...|.+++|+|.+ |+||+..|+|||..||.|||||.+|+
T Consensus 4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 4578899999999 89999999999999999999999884
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-08 Score=113.90 Aligned_cols=195 Identities=9% Similarity=0.037 Sum_probs=136.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC-------CceeeEE---EecCCeEEE-EcC------
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT-------IRDNFVI---DWVANNIYY-IDS------ 1108 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~-------~p~glAv---Dw~~~~LY~-td~------ 1108 (1332)
.|.+++||..++++|+++...++|.+++.. +...+.+...++. .|.||.+ |.. +.|++ ++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccc
Confidence 367889999999999999999999999976 3333333323321 5789999 665 77777 452
Q ss_pred ------CCceEEEEeeC----CceEEE--Eec-----------CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1109 ------QMHTINVARSD----GQHKKI--LVN-----------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1109 ------~~~~I~v~~ld----G~~~~~--~~~-----------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
....+.+++++ |+.... +.. ....|.+||||+ .|..|+++... .+.|+|++
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~-----~~~I~rV~ 165 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALG-----MPAIARVS 165 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEES-----SCEEEEEC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCC-----CCeEEEEe
Confidence 24678888988 554333 211 122488999999 89999998643 27899999
Q ss_pred cCCCceEEEEecC-----CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCce--EEEE------eecccceE-EEecC
Q psy5806 1166 LDGSYRTVLVEED-----LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR--KIVI------SKVAPYGL-SVRQS 1231 (1332)
Q Consensus 1166 ldG~~~~~l~~~~-----l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~--~~~~------~~~~P~gl-av~~~ 1231 (1332)
.||+...++.... ..-++||++.++++.|++++. .++|.++|+.-..+ ..+. .+..|.+| ++
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~--- 241 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTV--- 241 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEE---
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCccccccc---
Confidence 9999666554211 223779999999999999998 99999999983322 1111 14568885 55
Q ss_pred CccccccEE-EEEECCCCEEEEEEe
Q psy5806 1232 PGKAFIVEL-YWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1232 ~~~~~~~~l-Ywtd~~~~~V~~~~~ 1255 (1332)
.+++.+ |+++...+.+....+
T Consensus 242 ---~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 242 ---PVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp ---EETTEEEEEEEETTEEEEEECS
T ss_pred ---ccCCEEEEEEcCCCCEEEEECC
Confidence 356665 999976665444443
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-10 Score=89.63 Aligned_cols=38 Identities=32% Similarity=0.626 Sum_probs=35.5
Q ss_pred ccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
...|.+.+|+|. +++|||..|+|||..||.|||||.+|
T Consensus 3 ~~~C~~~~F~C~-~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 3 PPQCQPGEFACA-NSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEET-TTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCCCceEcC-CCCeEehhhccCCCCCCCCCCCCCCC
Confidence 347999999998 89999999999999999999999987
|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-11 Score=93.70 Aligned_cols=37 Identities=32% Similarity=0.816 Sum_probs=35.1
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
..|.+.||+|. +|+|||..|+|||+.||.|||||.+|
T Consensus 5 ~~C~~~~F~C~-nG~CIp~~~~CDG~~DC~DgSDE~~~ 41 (52)
T 2m0p_A 5 ASCLDTQYTCD-NHQCISKNWVCDTDNDCGDGSDEKNC 41 (52)
T ss_dssp CSSCSSEEECT-TCCEEETTSTTSSSCSSSSCHHHHSC
T ss_pred CCCCCCceECC-CCCEEecCccCCCCCCCCCCCccccc
Confidence 46999999998 89999999999999999999999988
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-10 Score=90.06 Aligned_cols=38 Identities=39% Similarity=0.942 Sum_probs=35.8
Q ss_pred CCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 56 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
+..|.+.+|+|.+|+||+..|+|||..||.|||||.+|
T Consensus 3 ~~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence 45789999999999999999999999999999999887
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=88.93 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=36.2
Q ss_pred cccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 11 GYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 11 ~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
....|.+.+|+|.+.++|||..|+|||..||.|||||.+|
T Consensus 3 ~~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CSCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred cCCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 3467999999998338999999999999999999999998
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-07 Score=111.77 Aligned_cols=241 Identities=12% Similarity=-0.016 Sum_probs=143.4
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeec-C-----C
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLM-N-----D 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~-~-----~ 1088 (1332)
|..++.+.. .++..++....+ ++.+++.+++||+++. ..+.|..+++........+... . .
T Consensus 49 v~v~D~~t~---~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 49 QWVLDAGSG---SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEECCCC---eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 455555432 233334444457 9999999999999984 3567999997644333333211 0 2
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEEEeeCC-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCC-------C----
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINVARSDG-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD-------N---- 1155 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~-------~---- 1155 (1332)
..|.++++++.++.||+++.. .+.|.+++ +. +....+ +..|..+.+.|....+|++.+.... .
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~ 200 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE---cCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEE
Confidence 469999999999999999875 67899998 63 332220 1122223333322222222221100 0
Q ss_pred ------------------------------CCCCcEEEEecCCCceEEEEec---------CCCCcce---EEEecCCCE
Q psy5806 1156 ------------------------------SPTTKIEKVYLDGSYRTVLVEE---------DLAFPNE---LAIDFKQRR 1193 (1332)
Q Consensus 1156 ------------------------------~~~~~I~r~~ldG~~~~~l~~~---------~l~~p~g---laiD~~~~~ 1193 (1332)
...+.++.+++.+...+++-.- .-..|.| +++++++++
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 0012345555544322211100 0013666 899999999
Q ss_pred EEEEEc---------CCCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEEecCCCCcc
Q psy5806 1194 LFWADS---------TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAREKSDTGQW 1262 (1332)
Q Consensus 1194 LY~~d~---------~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~~~~g~~~~ 1262 (1332)
||++.. ..+.|..+|........-+. ...|.+|++ ++++. .||.+++.++.|..+|..++ +
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~-----s~Dg~~~l~v~~~~~~~V~ViD~~t~---~ 352 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV-----AQDGGPDLYALSAGTEVLHIYDAGAG---D 352 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEE-----CCCCCeEEEEEcCCCCeEEEEECCCC---C
Confidence 999864 24689999997554433345 667999999 44566 79999989999999999888 5
Q ss_pred eEEEEecCCCCeeeEEEE
Q psy5806 1263 DVHLIRSNQEDFLNIKAI 1280 (1332)
Q Consensus 1263 ~~~~~~~~~~~~~~i~~~ 1280 (1332)
.+..+..--..|..|.++
T Consensus 353 vv~~i~~vG~~P~~~~~~ 370 (373)
T 2mad_H 353 QDQSTVELGSGPQVLSVM 370 (373)
T ss_pred EEeeecCCCCCCcEEEEc
Confidence 554432222455555543
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=89.51 Aligned_cols=38 Identities=32% Similarity=0.698 Sum_probs=34.0
Q ss_pred ccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
...|.+.+|+|. +++|||..|+|||..||.|||||.+|
T Consensus 5 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 5 AKECEKDQFQCR-NERCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp ---CCTTEEECT-TSCEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCCCCCceEcC-CCCEeChhhccCCCCCCCCCccccCC
Confidence 357999999998 79999999999999999999999998
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-10 Score=90.59 Aligned_cols=42 Identities=40% Similarity=0.904 Sum_probs=37.5
Q ss_pred CCCCCCCCEEec-CCCEEEeeeecCCCCCCCCCCCcccccccCC
Q psy5806 56 PKKCSPDEHRCT-TGHCILKTWLCDGIPDCSLGEDERNCNKTCD 98 (1332)
Q Consensus 56 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~C~ 98 (1332)
+..|.+.+|+|. +|+||+..|+|||..||.|||||.+|.. |.
T Consensus 4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~~-C~ 46 (50)
T 2knx_A 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG-CL 46 (50)
T ss_dssp TCTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGGT-CC
T ss_pred CCCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCccccccC-CC
Confidence 457899999995 9999999999999999999999999853 55
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-07 Score=102.94 Aligned_cols=205 Identities=9% Similarity=0.055 Sum_probs=146.8
Q ss_pred eecccc-cceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeC
Q psy5806 733 LPLRQL-KMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811 (1332)
Q Consensus 733 ~~~~~~-~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~l 811 (1332)
.|++++ .++.+++||+.+++||......+.|++++++|.....+-..+...++|||++..+ .+|+++...+++.+..+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEc
Confidence 366666 5799999999999999876678999999999766666655677899999999444 57788888899999887
Q ss_pred CCCce-EEE--EecCC-CCC-----eEEEEeCCCCeEEEEecccCcCCCCceEEEe--cCCCCcEEEec-----c--ccc
Q psy5806 812 DGKNA-KVL--FWLNL-YRP-----RSIVVHYGLGLMVWADWSRTRLTNNRIEMAH--MDGTNRAVFET-----E--VIW 873 (1332)
Q Consensus 812 dG~~~-~~l--~~~~~-~~P-----~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~--~dG~~~~~l~~-----~--l~~ 873 (1332)
+.... .++ ....+ ..| .|||+||..+.||.+.-... ..|.+.. +.+...+++-. . +..
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p----~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP----IEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS----EEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC----ceEEEEcccccCCceeeecchhhccccccCC
Confidence 54321 111 11112 234 89999999888988763322 2566665 12222344321 1 557
Q ss_pred CceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe-c--------cCCcceEEEEe-CCEEEEEeCCCCEEEEEECC
Q psy5806 874 PSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY-A--------VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKY 943 (1332)
Q Consensus 874 P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~-~--------~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~ 943 (1332)
+.+|++|+.+ ++||........|..+|.+|.-+..+. . .+.+|-|||++ ++.||.+.-. +.+++..|.
T Consensus 175 ~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~~ 252 (255)
T 3qqz_A 175 VSGAEFNQQK-NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTPQ 252 (255)
T ss_dssp CCEEEEETTT-TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC-
T ss_pred ceeEEEcCCC-CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEec
Confidence 8999999999 999999999999999999998444432 1 24689999999 5689999544 588887665
Q ss_pred C
Q psy5806 944 D 944 (1332)
Q Consensus 944 ~ 944 (1332)
.
T Consensus 253 ~ 253 (255)
T 3qqz_A 253 S 253 (255)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-10 Score=90.16 Aligned_cols=39 Identities=46% Similarity=1.160 Sum_probs=34.9
Q ss_pred CCCCCCCCEEec-----CCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 56 PKKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 56 ~~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
...|.+.+|+|. +++|||..|+|||..||.|||||.+|+
T Consensus 4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence 356899999998 789999999999999999999999984
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-06 Score=104.08 Aligned_cols=346 Identities=9% Similarity=-0.002 Sum_probs=207.5
Q ss_pred EeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC---CCcee
Q psy5806 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA---TGRAK 908 (1332)
Q Consensus 832 vdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d---G~~~~ 908 (1332)
+|| .+++|+++.+.+ +|...+.+......-+.....|.+++++.++ ++||.+.. .+.|..+|+. +....
T Consensus 163 ~d~-~~~~~V~~~~~~-----~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-r~lyv~~~-dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAG-----QIALIDGSTYEIKTVLDTGYAVHISRLSASG-RYLFVIGR-DGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp CCG-GGEEEEEETTTT-----EEEEEETTTCCEEEEEECSSCEEEEEECTTS-CEEEEEET-TSEEEEEETTSSSCCEEE
T ss_pred cCC-CceEEEEeCCCC-----eEEEEECCCCeEEEEEeCCCCccceEECCCC-CEEEEEcC-CCeEEEEECCCCCCcEeE
Confidence 444 367888876544 5666555432222112223467899999999 99999874 5789999994 32222
Q ss_pred EEeccCCcceEEEEe------CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccc
Q psy5806 909 RAYAVQSHPYTLTVL------DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHL 982 (1332)
Q Consensus 909 ~l~~~~~~P~~la~~------~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshl 982 (1332)
.+ .....|.++++. +.++|.++...++|..++..+.+.+.. +. ..
T Consensus 235 ~i-~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~---------i~----~~--------------- 285 (567)
T 1qks_A 235 EI-KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI---------QS----TR--------------- 285 (567)
T ss_dssp EE-ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE---------EE----CC---------------
T ss_pred EE-ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE---------Ee----cc---------------
Confidence 22 235679999987 458999988888877655443322220 00 00
Q ss_pred cccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEE
Q psy5806 983 CLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFA 1062 (1332)
Q Consensus 983 Cl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~s 1062 (1332)
....+... ..|-+ .+.++...+.+..+|++
T Consensus 286 -------------------------------------------~~~~~~~~----~~p~~---rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 286 -------------------------------------------GMTYDEQE----YHPEP---RVAAILASHYRPEFIVN 315 (567)
T ss_dssp -------------------------------------------EECTTTCC----EESCC---CEEEEEECSSSSEEEEE
T ss_pred -------------------------------------------cccccccc----ccCCC---ceEEEEEcCCCCEEEEE
Confidence 00000000 00000 12233333333445555
Q ss_pred eCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEec-C-CCCc-eEEE-
Q psy5806 1063 DMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVN-D-LMEP-LAIA- 1137 (1332)
Q Consensus 1063 d~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~-~-~~~P-~~ia- 1137 (1332)
....|.|..++..+.....+........|.++++|..++.+|+++...+.|.++|+.... ...+.. + ..+| +++.
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 556677777775532222221112234688999999999999999889999999998433 333433 2 2334 4665
Q ss_pred EcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-------eEEEEecCCCCcceEEEecCCCEEEEEEcC------CCeE
Q psy5806 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-------RTVLVEEDLAFPNELAIDFKQRRLFWADST------NKRI 1204 (1332)
Q Consensus 1138 vdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~------~~~I 1204 (1332)
++|..|.+|.|.... ...|..++.+... ....+...-..+..|.+.++++.||++... .++|
T Consensus 396 ~~p~~g~v~~t~~~g-----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v 470 (567)
T 1qks_A 396 VHPTFGPVWATSHMG-----DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 470 (567)
T ss_dssp EETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred ECCCCCcEEEeCCCC-----CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceE
Confidence 588778888775322 2678888887521 112222221334558889899999987742 3589
Q ss_pred EEEecCCC-----ce--EEEE--------e-ecccceEEEecCCccccccEEEEEECC----CCEEEEEEecCCCCcceE
Q psy5806 1205 EYCDFFGR-----SR--KIVI--------S-KVAPYGLSVRQSPGKAFIVELYWTDWE----AMSVVIAREKSDTGQWDV 1264 (1332)
Q Consensus 1205 ~~~d~dG~-----~~--~~~~--------~-~~~P~glav~~~~~~~~~~~lYwtd~~----~~~V~~~~~~~g~~~~~~ 1264 (1332)
..+|.+.. .. +++- . +.+|..+.+ +..+.+||++.|+ .+.|..+|..++ +..
T Consensus 471 ~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~~~~~s~~~~~~~~~~i~v~D~~t~---~~~ 542 (567)
T 1qks_A 471 AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF-----NKDGTEVWFSVWNGKDQESALVVVDDKTL---ELK 542 (567)
T ss_dssp EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE-----CTTSSEEEEEEECCTTSCCEEEEEETTTT---EEE
T ss_pred EEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE-----CCCCCEEEEEeecCCCCCCcEEEEECCCc---eEE
Confidence 99988633 22 2331 1 467888888 6678899999984 799999998888 555
Q ss_pred EEEec-CCCCeeeE
Q psy5806 1265 HLIRS-NQEDFLNI 1277 (1332)
Q Consensus 1265 ~~~~~-~~~~~~~i 1277 (1332)
.++.. .+..|.++
T Consensus 543 ~~i~~~~~~~P~g~ 556 (567)
T 1qks_A 543 HVIKDERLVTPTGK 556 (567)
T ss_dssp EEECCTTCCSEEEE
T ss_pred EEeCCCcccCCCee
Confidence 55542 34555554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-07 Score=106.21 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=138.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC----CCceeeEEEecCCeEEEEcC-----------CC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND----TIRDNFVIDWVANNIYYIDS-----------QM 1110 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~----~~p~glAvDw~~~~LY~td~-----------~~ 1110 (1332)
.+.++++++.++.+|+++...+.|..+++.++.....+..... ..|.++++++.++.||+++. ..
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 4788999999999999998889999999875543333322111 16899999998999999962 24
Q ss_pred ceEEEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-------------------
Q psy5806 1111 HTINVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY------------------- 1170 (1332)
Q Consensus 1111 ~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~------------------- 1170 (1332)
+.|.++++++... ..+.. ...|.+++++|...+||+++ + .|...++....
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~-~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~s~d 184 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG-R--------DLHVMDPEAGTLVEDKPIQSWEAETYAQPD 184 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES-S--------SEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC-C--------eEEEEECCCCcEeeeeeccccCCCceeCCC
Confidence 7899999975433 33433 35799999999877788873 1 13333332211
Q ss_pred ----------------------------------------------eEEE-EecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1171 ----------------------------------------------RTVL-VEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1171 ----------------------------------------------~~~l-~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
...+ +...-..|.++++++++++||.+ .+.
T Consensus 185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~ 261 (337)
T 1pby_B 185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNV 261 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESE
T ss_pred ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCe
Confidence 1100 11111356779999999999998 378
Q ss_pred EEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1204 IEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
|..+|++.......+. ...|.++++ ++.+.+||++ ...+.|..++..++ +.+..+.
T Consensus 262 v~~~d~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~~~-~~~~~i~v~d~~~~---~~~~~~~ 318 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLPHSYYSVNV-----STDGSTVWLG-GALGDLAAYDAETL---EKKGQVD 318 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEE-----CTTSCEEEEE-SBSSEEEEEETTTC---CEEEEEE
T ss_pred EEEEECCCCcCcceecCCCceeeEEE-----CCCCCEEEEE-cCCCcEEEEECcCC---cEEEEEE
Confidence 9999987654444444 678999999 4456688888 55789999998887 5544443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-07 Score=109.56 Aligned_cols=201 Identities=12% Similarity=0.131 Sum_probs=146.4
Q ss_pred ccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCC----CeEEEEeCCC
Q psy5806 738 LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNA----QTIMVSDIDG 813 (1332)
Q Consensus 738 ~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~----~~I~v~~ldG 813 (1332)
...+.++++|+. ++|||++...+.|+++++++.....+.......|.+|++|..+ +||+++... ..|.+.++++
T Consensus 44 ~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 44 GLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp CCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTS
T ss_pred CccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCC
Confidence 445678888864 6799999988999999987766555554445679999999765 599998766 6899999887
Q ss_pred CceEEEEe--cCCCCCeEEEEeCCCCeEEEEecccC-cCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEE
Q psy5806 814 KNAKVLFW--LNLYRPRSIVVHYGLGLMVWADWSRT-RLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWV 890 (1332)
Q Consensus 814 ~~~~~l~~--~~~~~P~~Iavdp~~g~lywtd~g~~-~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~ 890 (1332)
.....++. .....|.+|+++|. |.+|+++.... ......|.+...++.....+...+..|++++++.++ +.||++
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg-~~l~v~ 199 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE-KVLWVT 199 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS-SEEEEE
T ss_pred CEEEEEEccCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC-CEEEEE
Confidence 66553332 12356999999996 89999876320 000146888887765544454446779999999988 789999
Q ss_pred eCCCCeEEEEcc--CCCceeEEe-----c--cCCcceEEEEe-CCEEEEEeCCCCEEEEEEC
Q psy5806 891 DTSKHTIEYKTL--ATGRAKRAY-----A--VQSHPYTLTVL-DYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 891 d~~~~~I~~~~~--dG~~~~~l~-----~--~~~~P~~la~~-~~~iywtD~~~~~i~~~~~ 942 (1332)
+...+.|..+++ +|.....+. . ....|.++++. ++.||.++...+.|.+.+.
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 988889999998 454333221 1 12478899998 5688888888889998876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-07 Score=113.83 Aligned_cols=229 Identities=10% Similarity=0.018 Sum_probs=158.4
Q ss_pred CcceEEEEee--cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEEC--CCCCCceeEeec
Q psy5806 1011 TREFLLYTSR--FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM--SDSTRIKPIPLM 1086 (1332)
Q Consensus 1011 p~~~ll~~~~--~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l--~~g~~~~~i~~~ 1086 (1332)
|...++++.. +. |..++.+.. .++..++....+.+++|++.+++||.++.. +.|..+++ .++.....+ .
T Consensus 147 p~~~~~vs~~~d~~-V~v~D~~t~---~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i--~ 219 (543)
T 1nir_A 147 LPNLFSVTLRDAGQ-IALVDGDSK---KIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEI--K 219 (543)
T ss_dssp GGGEEEEEEGGGTE-EEEEETTTC---CEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEE--E
T ss_pred CCCEEEEEEcCCCe-EEEEECCCc---eEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEE--e
Confidence 3445555543 33 666665433 223333322237899999999999999966 99999998 433222222 2
Q ss_pred CCCCceeeEEEe----cCCeEEEEcCCCceEEEEeeC-CceEEEEec-C----------CCCceEEEEcCCCcEEEEEec
Q psy5806 1087 NDTIRDNFVIDW----VANNIYYIDSQMHTINVARSD-GQHKKILVN-D----------LMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1087 ~~~~p~glAvDw----~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~-~----------~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
....|.+||+++ .++.||+++...+.|.+++.. ++...++.. + ..+|.+|+++|..+.+|++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 345799999998 899999999888899999876 444444432 1 136789999998889998886
Q ss_pred CCCCCCCCCcEEEEecCCCceEE--EEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe---eccc-c
Q psy5806 1151 GLYDNSPTTKIEKVYLDGSYRTV--LVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS---KVAP-Y 1224 (1332)
Q Consensus 1151 ~~~~~~~~~~I~r~~ldG~~~~~--l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~---~~~P-~ 1224 (1332)
.. ++|..+++....... .+.. -.+|.++++|+++++||.+....++|..+|.........+. ..|| .
T Consensus 300 ~~------g~i~vvd~~~~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 300 ET------GKVLLVNYKDIDNLTVTSIGA-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp TT------TEEEEEECTTSSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CC------CeEEEEEecCCCcceeEEecc-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 55 789999886533211 2232 36799999999999999999889999999987544333333 3355 3
Q ss_pred eEEEecCCccccccEEEEEEC-CCCEEEEEEecC
Q psy5806 1225 GLSVRQSPGKAFIVELYWTDW-EAMSVVIAREKS 1257 (1332)
Q Consensus 1225 glav~~~~~~~~~~~lYwtd~-~~~~V~~~~~~~ 1257 (1332)
+..+ .++.++.+|++.. ..++|..++..+
T Consensus 373 g~~~----~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 373 GANF----VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp CEEE----EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred Cccc----CCCCCccEEEeccCCCceEEEEEeCC
Confidence 5544 0123588999986 678999999877
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.7e-07 Score=102.74 Aligned_cols=256 Identities=12% Similarity=0.015 Sum_probs=165.2
Q ss_pred EEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCC-CCceEEEE-----ecCCCCCeEEEEeCC---CCeEEEEecc
Q psy5806 775 RLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID-GKNAKVLF-----WLNLYRPRSIVVHYG---LGLMVWADWS 845 (1332)
Q Consensus 775 ~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld-G~~~~~l~-----~~~~~~P~~Iavdp~---~g~lywtd~g 845 (1332)
+++.+++..|.+||+...++ ||+++....+|.+.+.+ |+...+.. ..+..-|.+||++|. +|+||++...
T Consensus 25 ~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 35678899999999998765 99999988899999875 44322211 234567899999994 7999986432
Q ss_pred cCcCCCCceEEEecCCC--------CcEEEecc-----cccCceeEEeCCCCCeEEEEeC-------------CCCeEEE
Q psy5806 846 RTRLTNNRIEMAHMDGT--------NRAVFETE-----VIWPSCLAIDYSDNPKLYWVDT-------------SKHTIEY 899 (1332)
Q Consensus 846 ~~~~~~~~I~r~~~dG~--------~~~~l~~~-----l~~P~gl~iD~~~~~~lYw~d~-------------~~~~I~~ 899 (1332)
.. ..+|.|..+++. ..++|+.. ...+..|+++.++ +||++.. ..++|.+
T Consensus 104 ~~---~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 104 AS---DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp SS---SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred CC---CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEE
Confidence 11 148999988872 24555543 2345579999876 8999842 3689999
Q ss_pred EccCCC--------ceeEEeccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCC
Q psy5806 900 KTLATG--------RAKRAYAVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPN 970 (1332)
Q Consensus 900 ~~~dG~--------~~~~l~~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n 970 (1332)
++.+|+ ..+++...+..|++++++ .+.||.+|........++ .+......+ +-
T Consensus 179 i~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln-----------------~i~~G~nyG-wP 240 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELN-----------------AIKPGDNYG-WP 240 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEE-----------------EECTTCBCC-TT
T ss_pred EeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceee-----------------EEcCCCEec-CC
Confidence 999998 556666688899999998 578999987653322211 111111111 22
Q ss_pred cccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEE
Q psy5806 971 ACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFF 1050 (1332)
Q Consensus 971 ~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~i 1050 (1332)
.|.. . ..+ .++. .+... ++ +....|.|+
T Consensus 241 ~~~g---~-------------~~~-~~~~------------~P~~~----------------------~~-~~~~ap~G~ 268 (347)
T 3das_A 241 EAEG---K-------------GGG-SGFH------------DPVAQ----------------------WS-TDEASPSGI 268 (347)
T ss_dssp TCCS---S-------------CCC-TTCC------------CCSEE----------------------EC-TTTCCEEEE
T ss_pred cccC---C-------------CCC-cccc------------CCcEe----------------------cC-CCCCCCcce
Confidence 2210 0 000 0000 00000 00 111247888
Q ss_pred EEeCCCcEEEEEeCCCCeEEEEECCCCC---CceeEeecCCCCceeeEEEecCCeEEEEcCC
Q psy5806 1051 DYHYSKNLIYFADMRSGNLRTFDMSDST---RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~~~~~I~~~~l~~g~---~~~~i~~~~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
+|. ++.+|......++|.++.++.+. ..+.++....+.|.++++++ .+.||+++.+
T Consensus 269 ~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td~ 327 (347)
T 3das_A 269 AYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTSN 327 (347)
T ss_dssp EEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEECT
T ss_pred EEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEcC
Confidence 886 47899999999999999987432 12334433357899999996 6799998654
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-10 Score=91.73 Aligned_cols=39 Identities=36% Similarity=0.861 Sum_probs=35.9
Q ss_pred ccCCCCCceecCC----CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNR----TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~----~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
...|.+.+|+|.+ ++.|||..|+|||+.||.|||||.+|
T Consensus 2 ~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C 44 (47)
T 1jrf_A 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44 (47)
T ss_dssp CCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred CCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence 4579999999985 68999999999999999999999988
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-10 Score=88.52 Aligned_cols=38 Identities=37% Similarity=0.746 Sum_probs=35.4
Q ss_pred ccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
...|.+.+|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 2 ~~~C~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 2 SHSCSSTQFKCN-SGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp CSSSCTTEEECT-TSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCCCceEeC-CCCeEecCcccCCCCCCCCCCCCCCc
Confidence 457999999998 89999999999999999999999875
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-10 Score=86.26 Aligned_cols=36 Identities=47% Similarity=1.062 Sum_probs=33.7
Q ss_pred CCCCCEEecC--CCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 59 CSPDEHRCTT--GHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 59 C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
|++.+|+|.+ |+|||..|+|||..||.|||||.+|+
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 6778999997 89999999999999999999999985
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.4e-07 Score=103.10 Aligned_cols=235 Identities=12% Similarity=0.140 Sum_probs=149.8
Q ss_pred EEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEe-CCEEEEEeCCCCEEEEEEC
Q psy5806 865 AVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVL-DYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 865 ~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~ 942 (1332)
+.+.+. ...+.|.+.|.++ ++|||+|...+.|..++.++...+.+.. -..|.+++.. ++.+|.+. ...|++++.
T Consensus 41 ~~~~~~~~~~~egp~~~~~~-~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~~i~~~~dg~l~v~~--~~gl~~~d~ 116 (326)
T 2ghs_A 41 RVLDETPMLLGEGPTFDPAS-GTAWWFNILERELHELHLASGRKTVHAL-PFMGSALAKISDSKQLIAS--DDGLFLRDT 116 (326)
T ss_dssp EEEECSCCSBEEEEEEETTT-TEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEEEEEEEETTEEEEEE--TTEEEEEET
T ss_pred EEeeccCCCCCcCCeEeCCC-CEEEEEECCCCEEEEEECCCCcEEEEEC-CCcceEEEEeCCCeEEEEE--CCCEEEEEC
Confidence 444444 5667899999988 8999999988999999998765544422 2456667665 45555544 223444332
Q ss_pred CCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecc
Q psy5806 943 YDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFG 1022 (1332)
Q Consensus 943 ~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~ 1022 (1332)
.+++
T Consensus 117 ~~g~---------------------------------------------------------------------------- 120 (326)
T 2ghs_A 117 ATGV---------------------------------------------------------------------------- 120 (326)
T ss_dssp TTCC----------------------------------------------------------------------------
T ss_pred CCCc----------------------------------------------------------------------------
Confidence 2221
Q ss_pred eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCC------CCeEEEEECCCCCCceeEeecCCCCceeeEE
Q psy5806 1023 VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR------SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVI 1096 (1332)
Q Consensus 1023 ~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~------~~~I~~~~l~~g~~~~~i~~~~~~~p~glAv 1096 (1332)
+..+.-.... .....+.++.+|+.+ ++|+++.. .+.|++++ + +. ...+ ..+...|.+|++
T Consensus 121 -~~~~~~~~~~--------~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~-~-g~-~~~~-~~~~~~~~~i~~ 186 (326)
T 2ghs_A 121 -LTLHAELESD--------LPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA-K-GK-VTKL-FADISIPNSICF 186 (326)
T ss_dssp -EEEEECSSTT--------CTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE-T-TE-EEEE-EEEESSEEEEEE
T ss_pred -EEEEeeCCCC--------CCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe-C-Cc-EEEe-eCCCcccCCeEE
Confidence 0000000000 001124456666654 36666532 35677776 3 32 2222 234557899999
Q ss_pred EecCCeEEEEcCCCceEEEEeeC---C-ce--EEEEe---cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1097 DWVANNIYYIDSQMHTINVARSD---G-QH--KKILV---NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1097 Dw~~~~LY~td~~~~~I~v~~ld---G-~~--~~~~~---~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
+..++.|||++...+.|.+++++ | .. +.++. .....|.+|++|+ .|.||++.++. ..|.+.+.+
T Consensus 187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~------~~v~~~d~~ 259 (326)
T 2ghs_A 187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGE------GAVDRYDTD 259 (326)
T ss_dssp CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETT------TEEEEECTT
T ss_pred cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCC------CEEEEECCC
Confidence 98899999999888899999985 5 31 22221 1235799999998 68899998875 679999998
Q ss_pred CCceEEEEecCCCCcceEEEe-cCCCEEEEEEcCC
Q psy5806 1168 GSYRTVLVEEDLAFPNELAID-FKQRRLFWADSTN 1201 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD-~~~~~LY~~d~~~ 1201 (1332)
|.....+ ......|.+++++ ++.+.||++....
T Consensus 260 g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 260 GNHIARY-EVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 7654443 3334568999998 7888999998765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-07 Score=104.66 Aligned_cols=183 Identities=11% Similarity=0.093 Sum_probs=129.1
Q ss_pred ceEEEEee----cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC
Q psy5806 1013 EFLLYTSR----FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND 1088 (1332)
Q Consensus 1013 ~~ll~~~~----~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~ 1088 (1332)
..|+.++. +. |+.|++.+..... ..+++....+.+++++ +++||+++...+.+..++..++.....+- .+
T Consensus 32 g~Lyvstg~~~~s~-v~~iD~~tg~v~~-~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~g- 105 (266)
T 2iwa_A 32 DTLFESTGLYGRSS-VRQVALQTGKVEN-IHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-HQ- 105 (266)
T ss_dssp TEEEEEECSTTTCE-EEEEETTTCCEEE-EEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE-CC-
T ss_pred CeEEEECCCCCCCE-EEEEECCCCCEEE-EEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE-CC-
Confidence 35555543 45 8888876543221 2233333345677776 57999999999999999976443333332 22
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEecC-----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVND-----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIE 1162 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~-----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~ 1162 (1332)
.|+|+++.+.++.||+++ ..+.|.+++.+... ...+..+ +..|++++.. .|.||.+.|.. +.|.
T Consensus 106 -~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~------~~V~ 175 (266)
T 2iwa_A 106 -MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQT------DCIA 175 (266)
T ss_dssp -SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS------SEEE
T ss_pred -CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCC------CeEE
Confidence 467777777799999999 57899999987543 2223322 2357888877 57999998876 7899
Q ss_pred EEecCCCceEEEEec-CC------------CCcceEEEecCCCEEEEEEcCCCeEEEEecCC
Q psy5806 1163 KVYLDGSYRTVLVEE-DL------------AFPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1163 r~~ldG~~~~~l~~~-~l------------~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
++++........+.. ++ ..|+||++|+++++||++....++|..+++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 999966665555442 22 46899999999999999999999999998854
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-07 Score=109.16 Aligned_cols=242 Identities=14% Similarity=0.030 Sum_probs=145.6
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeecC------C
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLMN------D 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~~------~ 1088 (1332)
+..|+.+ ...++..|+....|. +++++.+++||+++. ..+.|..+++.++.....+.... .
T Consensus 61 V~ViD~~---t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 61 QFVIDGE---AGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp EEEEETT---TTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred EEEEECC---CCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence 5555544 233444455445564 999999999999984 34679999977544444443211 2
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEEEeeCCce-EEEEec-C--CCCceE----EEEcCCCcEEEEEecC--C-----
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQH-KKILVN-D--LMEPLA----IAVYPRRGLLFYSHWG--L----- 1152 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~~-~~~~~~-~--~~~P~~----iavdp~~g~Lywtd~~--~----- 1152 (1332)
..|.++++++.++.||+++.. .+.|.++|+.... ...+.. + ...|.+ +++.+...++|++... .
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~ 216 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 216 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence 379999999999999999875 6788888886432 222211 0 011222 2444422222222111 0
Q ss_pred ---CC-CC-----------C---------CCcEEEEecCCCceEEEEecCC---------CCcce---EEEecCCCEEEE
Q psy5806 1153 ---YD-NS-----------P---------TTKIEKVYLDGSYRTVLVEEDL---------AFPNE---LAIDFKQRRLFW 1196 (1332)
Q Consensus 1153 ---~~-~~-----------~---------~~~I~r~~ldG~~~~~l~~~~l---------~~p~g---laiD~~~~~LY~ 1196 (1332)
++ +. . .++|+.+++.+...+++-.-.+ -.|.| ++++.++++||+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 217 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred cceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 00 00 0 0235555555444322211000 01334 899999999999
Q ss_pred EEc---------CCCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEEecCCCCcceEE
Q psy5806 1197 ADS---------TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAREKSDTGQWDVH 1265 (1332)
Q Consensus 1197 ~d~---------~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~~~~g~~~~~~~ 1265 (1332)
+.. ..++|..+|.....+..-+. +..|.+|++ ++++. +||.+++.++.|..+|..++ +.+.
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lav-----s~D~~~~ly~tn~~~~~VsViD~~t~---k~~~ 368 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINV-----SQDEKPLLYALSTGDKTLYIHDAESG---EELR 368 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE-----CSSSSCEEEEEETTTTEEEEEETTTC---CEEE
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEE-----CCCCCeEEEEEcCCCCeEEEEECCCC---cEEE
Confidence 864 23689999997655544455 778999999 44443 79999999999999999888 6555
Q ss_pred EEecCCCCeeeEE
Q psy5806 1266 LIRSNQEDFLNIK 1278 (1332)
Q Consensus 1266 ~~~~~~~~~~~i~ 1278 (1332)
.+.. ..++..|.
T Consensus 369 ~i~~-~~~p~~l~ 380 (386)
T 3sjl_D 369 SVNQ-LGHGPQVI 380 (386)
T ss_dssp EECC-CCSSCCEE
T ss_pred EecC-CCCCceeE
Confidence 5443 34555553
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-10 Score=89.37 Aligned_cols=39 Identities=33% Similarity=0.881 Sum_probs=36.5
Q ss_pred CCCCCCCEEecCC-CEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 57 KKCSPDEHRCTTG-HCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 57 ~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
..|.+.+|+|.+| +||+..|+|||..||.|||||.+|+.
T Consensus 5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 5789999999999 89999999999999999999999864
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-08 Score=115.86 Aligned_cols=228 Identities=9% Similarity=-0.097 Sum_probs=145.0
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeecC------C
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLMN------D 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~~------~ 1088 (1332)
+.-|+.+ ...++..|+....| ++.+++..++||+++. ..+.|..+++.++.....+...+ .
T Consensus 48 vsvID~~---t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 48 NWVSCAG---CGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEETT---TTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred EEEEECC---CCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 4444443 33444445544567 9999999999999983 36789999987655554443210 2
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEE--EeeCCceEEEEec-C-----------------------------------
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINV--ARSDGQHKKILVN-D----------------------------------- 1129 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v--~~ldG~~~~~~~~-~----------------------------------- 1129 (1332)
..|.+|++++.++.||+++.. .+.+.+ +|+.. ...+.. +
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 479999999999999999875 566777 54422 111110 0
Q ss_pred -----------CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC---------CCCcce---EE
Q psy5806 1130 -----------LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED---------LAFPNE---LA 1186 (1332)
Q Consensus 1130 -----------~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~---------l~~p~g---la 1186 (1332)
-..|. + .+..+.+||+.. + .|..+++.+...+++-.-. ...|.| ++
T Consensus 202 v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~-------~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred EEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-C-------EEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 01122 2 333455555543 2 4777777664433322111 123666 89
Q ss_pred EecCCCEEEEEEc---C-----CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC-CCCEEEEEEec
Q psy5806 1187 IDFKQRRLFWADS---T-----NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW-EAMSVVIAREK 1256 (1332)
Q Consensus 1187 iD~~~~~LY~~d~---~-----~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~-~~~~V~~~~~~ 1256 (1332)
+++++++||++.. + .+.+..+|+....+..-+. +..|.+|++ ++++.++|+++. .++.|..+|..
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~-----s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIA-----AQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEE-----CCSSSCEEEEEETTTTEEEEEESS
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEE-----CCCCCEEEEEccCCCCeEEEEECC
Confidence 9999999999865 3 3456688886544433344 678999999 445667999998 79999999998
Q ss_pred CCCCcceEEEEecCCCCeeeE
Q psy5806 1257 SDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1257 ~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
++ +.+..+.- ...|.+|
T Consensus 346 t~---kvv~~I~v-g~~P~~i 362 (368)
T 1mda_H 346 SD---QDQSSVEL-DKGPESL 362 (368)
T ss_dssp SC---EEEEECCC-CSCCCEE
T ss_pred CC---cEEEEEEC-CCCCCEE
Confidence 88 55444432 2345555
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-10 Score=86.81 Aligned_cols=37 Identities=38% Similarity=0.932 Sum_probs=34.8
Q ss_pred CCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 57 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
..|++.+|+|.+|.|||..|+|||..||.|||||.+|
T Consensus 3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 4688999999999999999999999999999999875
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-10 Score=89.74 Aligned_cols=38 Identities=37% Similarity=0.884 Sum_probs=35.5
Q ss_pred cCCCCCceecCCCC-ceEeCCcCcCCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTG-ACIPAQWQCDNEFDCEMGEDEMKCP 51 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~-~Ci~~~~~CDg~~DC~dgsDE~~C~ 51 (1332)
..|.+.+|+|. ++ +|||..|+|||+.||.|||||.+|+
T Consensus 5 ~~C~~~~F~C~-~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 5 LNCTSAQFKCA-DGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CCCCSSSEECS-SSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCCCeeECC-CCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 67999999998 66 8999999999999999999999993
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.87 E-value=0.00082 Score=83.38 Aligned_cols=557 Identities=12% Similarity=0.066 Sum_probs=286.8
Q ss_pred CCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceE
Q psy5806 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRH 589 (1332)
Q Consensus 510 ~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~ 589 (1332)
....+|||.+.++.|.- -+..+.|.+-+.+|+...++. .......+|++.|...+|.-... ...|..-+++|....
T Consensus 17 ~~V~~~a~spdg~~las-~~~d~~v~iWd~~~~~~~~l~-gh~~~V~~l~fspdg~~las~~~--d~~i~vWd~~~~~~~ 92 (577)
T 2ymu_A 17 SSVRGVAFSPDGQTIAS-ASDDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASD--DKTVKLWNRNGQLLQ 92 (577)
T ss_dssp SCEEEEEECTTSSCEEE-EETTSEEEEECTTSCEEEEEE-CCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTSCEEE
T ss_pred CcEEEEEECCCCCEEEE-EeCCCEEEEEECCCCEEEEEe-CCCCCEEEEEECCCCCEEEEEeC--CCEEEEEECCCCEEE
Confidence 45678888886665544 345678888888887655554 33456789999997555554432 233444446665444
Q ss_pred EEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCC
Q psy5806 590 ILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNEN 669 (1332)
Q Consensus 590 ~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~ 669 (1332)
.+. ..-.....+++.+.+++|..+... +.+...+..+........ .
T Consensus 93 ~~~-~~~~~v~~~~~s~d~~~l~~~~~d-~~~~~~~~~~~~~~~~~~---------------------~----------- 138 (577)
T 2ymu_A 93 TLT-GHSSSVRGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTG---------------------H----------- 138 (577)
T ss_dssp EEC-CCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTCCEEEEECC---------------------C-----------
T ss_pred EEE-CCCCCEEEEEECCCCCEEEEEcCC-CceeecccccceeeeccC---------------------C-----------
Confidence 332 233455778887776665544322 233333322221111100 0
Q ss_pred CCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCC
Q psy5806 670 NGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTK 749 (1332)
Q Consensus 670 nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~ 749 (1332)
.+ .-.+ ..+.+++ ..+.........++..... ............+..+.+.+.
T Consensus 139 ~~------------~v~~-----~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 191 (577)
T 2ymu_A 139 SS------------SVWG-----VAFSPDG--------QTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPD 191 (577)
T ss_dssp SS------------CEEE-----EEECTTS--------SCEEEEETTSEEEEECTTS--CEEEEEECCSSCEEEEEECTT
T ss_pred CC------------ceee-----eeeecCC--------ccceecccccceeccccce--eeeeeccCCCcceeeeeecCC
Confidence 00 0000 0000111 0111111111111111000 000111112334556677766
Q ss_pred CceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeE
Q psy5806 750 NEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRS 829 (1332)
Q Consensus 750 ~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~ 829 (1332)
...++ +-...+.|...+.++.....+ ...-..+.++++...++.|+... ..+.|.+.+.+++....+.. ......+
T Consensus 192 ~~~l~-~~~~d~~v~~w~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~-~d~~i~~w~~~~~~~~~~~~-~~~~v~~ 267 (577)
T 2ymu_A 192 GQTIA-SASDDKTVKLWNRNGQLLQTL-TGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTG-HSSSVNG 267 (577)
T ss_dssp SSCEE-EEETTSEEEEECTTSCEEEEE-ECCSSCEEEEEECTTSSCEEEEE-TTSCEEEECTTSCEEEEECC-CSSCEEE
T ss_pred CCEEE-EEcCCCEEEEEeCCCcEEEEE-ecCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCCCEEEEEec-CCCCEEE
Confidence 55444 334456676666665443333 33345677889988777666543 45678898888876555432 2345788
Q ss_pred EEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeE
Q psy5806 830 IVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKR 909 (1332)
Q Consensus 830 Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~ 909 (1332)
+++.|....|.-... . ..|...+.+|.....+........++++.+++ +.|.-+. ..+.|...++++.....
T Consensus 268 v~~~~d~~~l~~~~~--d----~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~-~d~~i~~w~~~~~~~~~ 339 (577)
T 2ymu_A 268 VAFRPDGQTIASASD--D----KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASAS-DDKTVKLWNRNGQHLQT 339 (577)
T ss_dssp EEECTTSSEEEEEET--T----SCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEE-TTSCEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEeC--C----CEEEEEeCCCcEEEEEecCCCCeEEEEECCCC-CEEEEEe-CCCeEEEEeCCCCeeEE
Confidence 999987444444332 2 35666666665444433223444567777666 4443332 33445444444433322
Q ss_pred EeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCC
Q psy5806 910 AYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTN 989 (1332)
Q Consensus 910 l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~ 989 (1332)
+........++++.
T Consensus 340 ~~~~~~~v~~~~~s------------------------------------------------------------------ 353 (577)
T 2ymu_A 340 LTGHSSSVWGVAFS------------------------------------------------------------------ 353 (577)
T ss_dssp ECCCSSCEEEEEEC------------------------------------------------------------------
T ss_pred EeCCCCCEEEEEEC------------------------------------------------------------------
Confidence 21111111122211
Q ss_pred ccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCCcEEEEEeCCCCe
Q psy5806 990 FTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSKNLIYFADMRSGN 1068 (1332)
Q Consensus 990 ~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~~~lY~sd~~~~~ 1068 (1332)
|.|.. |+....+..|+..+... ..+..+. .-..+.+++|++.++.|.... ..+.
T Consensus 354 -----~~g~~---------------l~~~~~dg~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~ 408 (577)
T 2ymu_A 354 -----PDGQT---------------IASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKT 408 (577)
T ss_dssp -----TTSSE---------------EEEEETTSEEEEEETTC----CEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSE
T ss_pred -----CCCCE---------------EEEEeCCCEEEEEcCCC----CEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCE
Confidence 11111 11111111011111100 0000001 112346777777776665544 5566
Q ss_pred EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEE
Q psy5806 1069 LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYS 1148 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywt 1148 (1332)
|+..+.+ +.....+. .....+.+|++.+.++.|..+ ...+.|.+++++++....+..-.....+++++|...+|..+
T Consensus 409 v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 409 VKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp EEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEE-cCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 7766643 33222222 233456789998777766554 44568999999988776665555678899999965555444
Q ss_pred ecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEE
Q psy5806 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLS 1227 (1332)
Q Consensus 1149 d~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~gla 1227 (1332)
. .. ..|..-+++|.....+.. .-...+.|++.++++.|.-+. ..+.|...|++|.....+.. .....+|+
T Consensus 486 ~-~d------~~i~iw~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~-~dg~v~lwd~~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 486 S-DD------KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp E-TT------SEEEEEETTSCEEEEEEC-CSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEEECCSSCEEEEE
T ss_pred e-CC------CEEEEEcCCCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEE-CcCEEEEEeCCCCEEEEEcCCCCCEEEEE
Confidence 3 22 457777788876555543 335678899998888776554 56789888988865555544 56667888
Q ss_pred EecCCccccccEEEEEECCCCEEEE
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
+ .+++.+|. |-...+.|..
T Consensus 557 f-----s~dg~~l~-s~~~D~~i~~ 575 (577)
T 2ymu_A 557 F-----SPDGQTIA-SASSDKTVKL 575 (577)
T ss_dssp E-----CTTSSCEE-EEETTSCEEE
T ss_pred E-----cCCCCEEE-EEeCCCEEEE
Confidence 8 22344443 4444555543
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-09 Score=96.99 Aligned_cols=52 Identities=35% Similarity=0.735 Sum_probs=43.3
Q ss_pred CCCCCCCCCEEec-CCCEEEeeeecCCCCCCCCCCCccc---cc--ccCCCCCccccCC
Q psy5806 55 PPKKCSPDEHRCT-TGHCILKTWLCDGIPDCSLGEDERN---CN--KTCDAQKEFSCMK 107 (1332)
Q Consensus 55 ~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~---C~--~~C~~~~~~~C~~ 107 (1332)
.+..|.+.+|+|. +|.|||..|+|||..||.|||||.. |+ .+|.+. +|+|.+
T Consensus 5 ~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~-~f~c~~ 62 (80)
T 2kny_A 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGS-GSGSTE 62 (80)
T ss_dssp SSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTC-SSCHHH
T ss_pred CCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcc-cchhhh
Confidence 4568999999998 6899999999999999999999985 55 346666 777765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-06 Score=103.53 Aligned_cols=223 Identities=12% Similarity=0.001 Sum_probs=138.4
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeec-----CCC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLM-----NDT 1089 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~-----~~~ 1089 (1332)
|..++.+.. .++..++....| ++++++.+++||+++. ..+.|..+++..+.....+... ...
T Consensus 33 v~v~D~~t~---~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 33 VHVYDYTNG---KFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEEETTTC---CEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred EEEEECCCC---eEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 666765433 223334444567 9999999999999984 2456999997644433333221 134
Q ss_pred CceeeEEEecCCeEEEEcCC-CceEEEEeeCCc-eEEE-EecC---------CCCceEEEEcCCCcEEEEEecCCC----
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQ-HKKI-LVND---------LMEPLAIAVYPRRGLLFYSHWGLY---- 1153 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~-~~~~-~~~~---------~~~P~~iavdp~~g~Lywtd~~~~---- 1153 (1332)
.|.+|++++.++.||+++.. .+.|.+++++.. .... +..+ ...+.-+++.+....++|+.....
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 79999999999999999876 688999998743 2222 1110 012344666665555555532210
Q ss_pred --------C-CC------------------CCCcEEEEecCCCceEEEEecC--------C-CCcce---EEEecCCCEE
Q psy5806 1154 --------D-NS------------------PTTKIEKVYLDGSYRTVLVEED--------L-AFPNE---LAIDFKQRRL 1194 (1332)
Q Consensus 1154 --------~-~~------------------~~~~I~r~~ldG~~~~~l~~~~--------l-~~p~g---laiD~~~~~L 1194 (1332)
. .. ..++|+.+++.+....++-.-. . ..|.| +++++++++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 189 QSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp EEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred eccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 0 00 0122444444433222211100 0 12455 9999999999
Q ss_pred EEEEc----------CCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1195 FWADS----------TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1195 Y~~d~----------~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|++.. ..+.|..+|+........+. .. |.+|++ ++++.+||.+++ +.|..+|..++
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~-----spdg~~l~v~n~--~~v~v~D~~t~ 335 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTI-----DQQRNLMLTLDG--GNVNVYDISQP 335 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEE-----ETTTTEEEEECS--SCEEEEECSSS
T ss_pred EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEE-----CCCCCEEEEeCC--CeEEEEECCCC
Confidence 99865 24589999987554433344 45 999999 567789999996 99999998765
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-10 Score=89.20 Aligned_cols=39 Identities=46% Similarity=1.226 Sum_probs=35.8
Q ss_pred CCCCCCCEEec-----CCCEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 57 KKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 57 ~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
..|.+.+|+|. +++|||..|+|||..||.|||||.+|..
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~~ 46 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHHC
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCCC
Confidence 46889999998 7899999999999999999999999864
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=112.13 Aligned_cols=157 Identities=12% Similarity=0.093 Sum_probs=110.8
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee--c------CCCCceeeEEEec---CCeEEEEcCC-
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL--M------NDTIRDNFVIDWV---ANNIYYIDSQ- 1109 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~--~------~~~~p~glAvDw~---~~~LY~td~~- 1109 (1332)
.++.+|.+|++++.+ +||+++...++|++++..+|.. +.+.. . +.+.+.|||+++. ++.||+++..
T Consensus 24 ~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 24 SNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 457789999999875 6999997777899998543432 22221 1 2345679999987 8999999853
Q ss_pred -----------CceEEEEeeCCc-----eEEEEec-----CCCCceEEEEcCCCcEEEEEecCCCC--------------
Q psy5806 1110 -----------MHTINVARSDGQ-----HKKILVN-----DLMEPLAIAVYPRRGLLFYSHWGLYD-------------- 1154 (1332)
Q Consensus 1110 -----------~~~I~v~~ldG~-----~~~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~-------------- 1154 (1332)
..+|.++++++. ..+++.. ....+.+|+++| .|+||++......
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~ 180 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQH 180 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccccccccc
Confidence 357777777531 2233322 234589999999 7899999532100
Q ss_pred ------------CCCCCcEEEEecCCCc----------eEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1155 ------------NSPTTKIEKVYLDGSY----------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1155 ------------~~~~~~I~r~~ldG~~----------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
....++|.|++.||+. ...++..++..|.||++|+ .++||.+|.+.+
T Consensus 181 ~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~ 249 (454)
T 1cru_A 181 TPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPN 249 (454)
T ss_dssp CCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred ccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCC
Confidence 1125789999999982 2345666889999999998 689999997643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-07 Score=108.48 Aligned_cols=201 Identities=16% Similarity=0.108 Sum_probs=133.4
Q ss_pred eEEEEEeCCCcEEE--EEe-------C-----CCCeEEEEECC-CCCCceeEee---cCCCCceeeEEEecCCeEEEEcC
Q psy5806 1047 SIFFDYHYSKNLIY--FAD-------M-----RSGNLRTFDMS-DSTRIKPIPL---MNDTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY--~sd-------~-----~~~~I~~~~l~-~g~~~~~i~~---~~~~~p~glAvDw~~~~LY~td~ 1108 (1332)
+..+++++.+++|| .++ . ..+.+..++++ +|.....+.. .....|.++++++.++.||+++.
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 44567788877544 333 1 46677777765 2332222221 13457999999999999999998
Q ss_pred CCceEEEEeeC--CceEEE--Ee--cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC---CCceE---EEE-
Q psy5806 1109 QMHTINVARSD--GQHKKI--LV--NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD---GSYRT---VLV- 1175 (1332)
Q Consensus 1109 ~~~~I~v~~ld--G~~~~~--~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld---G~~~~---~l~- 1175 (1332)
..+.|.+++++ |+...+ +. .....|++++++|...+||+++... +.|...+++ |.... .+.
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG------NRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC------CeEEEEEEeCCCCcEEEccceEEc
Confidence 88899999996 554322 32 1135799999999877999998654 456665554 43211 111
Q ss_pred -ecCC---C-------CcceEE-EecCCCEEEEEEcCCC-----eEEEEecC--CCceEE--EEe--ecccceEEEecCC
Q psy5806 1176 -EEDL---A-------FPNELA-IDFKQRRLFWADSTNK-----RIEYCDFF--GRSRKI--VIS--KVAPYGLSVRQSP 1232 (1332)
Q Consensus 1176 -~~~l---~-------~p~gla-iD~~~~~LY~~d~~~~-----~I~~~d~d--G~~~~~--~~~--~~~P~glav~~~~ 1232 (1332)
..+. . .|.+++ ++++++.||.++...+ +|..++++ |..+.+ .+. ...|.++++
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~---- 314 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV---- 314 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE----
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee----
Confidence 1111 1 488999 9999999999987665 88888874 443322 122 457889998
Q ss_pred ccc---cccEEEEEECCCCEEEEEEecCC
Q psy5806 1233 GKA---FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1233 ~~~---~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++ ++++||+++..+++|..++....
T Consensus 315 -sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 315 -SPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -EECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -cCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 44 47899999988888887776543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-06 Score=95.09 Aligned_cols=187 Identities=14% Similarity=0.079 Sum_probs=135.3
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~ 1125 (1332)
..||.|+ +++||.+....+.|+++++.+|.-...+ .....-.+||+++ +++||.++...+.+.++|.+ ++....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4789888 4799999999999999999877666555 3322234778887 89999999999999999987 444444
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----CCCCcceEEEecCCCEEEEEEcC
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----DLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+... ..+.+|+-| .++||.++ +. .+|..++........-+.. .+..+|+|... +++||.....
T Consensus 132 i~~~-~eGwGLt~D--g~~L~vSd-Gs------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~ 199 (268)
T 3nok_A 132 TRYS-GEGWGLCYW--NGKLVRSD-GG------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWH 199 (268)
T ss_dssp EECS-SCCCCEEEE--TTEEEEEC-SS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT
T ss_pred EeCC-CceeEEecC--CCEEEEEC-CC------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECC
Confidence 5433 356677755 57999998 44 6899888766443332221 23456777665 6799998888
Q ss_pred CCeEEEEecCCCceEEEEe---e------------cccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1201 NKRIEYCDFFGRSRKIVIS---K------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~~~~~~---~------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
++.|.++|.........+. + .-|.|||+ ++.+++||+|.-.=..+|++..
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~-----dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV-----EPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE-----CTTTCCEEEEETTCSEEEEEEE
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE-----cCCCCEEEEeCCCCCceEEEEE
Confidence 9999999996444333333 1 36789999 5668899999977678887764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-07 Score=105.76 Aligned_cols=203 Identities=9% Similarity=-0.020 Sum_probs=137.6
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECC-CCCCceeEeecCCCCceeeEEEecCCe--EEEEc------C-----
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS-DSTRIKPIPLMNDTIRDNFVIDWVANN--IYYID------S----- 1108 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~-~g~~~~~i~~~~~~~p~glAvDw~~~~--LY~td------~----- 1108 (1332)
+..+|..+++++.++.||.++.. .|..++++ +|...........+.|.++++++.++. ||.++ .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 44568899999999999999865 78877765 343222211112245889999988885 44454 1
Q ss_pred -CCceEEEEeeC--CceEEEEe----cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEE--Ee--
Q psy5806 1109 -QMHTINVARSD--GQHKKILV----NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVL--VE-- 1176 (1332)
Q Consensus 1109 -~~~~I~v~~ld--G~~~~~~~----~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l--~~-- 1176 (1332)
..+.+.+++++ |+....+. .....|.+++++|...+||.++.+. .+|...+++ ......+ +.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~------~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA------NKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTSCEEEEEEEECS
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC------CEEEEEEECCCCCEEEeeeEecC
Confidence 45678888885 55443322 2346899999999777899998765 678888886 3332222 22
Q ss_pred cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC---CCce---EEEEee-------c-------ccceEE-EecCCccc
Q psy5806 1177 EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF---GRSR---KIVISK-------V-------APYGLS-VRQSPGKA 1235 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d---G~~~---~~~~~~-------~-------~P~gla-v~~~~~~~ 1235 (1332)
..-..|.++++++++++||++....+.|..++++ |... ..+... . .|.+++ + ++
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----sp 264 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL-----TF 264 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE-----CT
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE-----CC
Confidence 1135699999999999999999888888888776 3321 112111 1 488899 8 55
Q ss_pred cccEEEEEECCCC-----EEEEEEec-CC
Q psy5806 1236 FIVELYWTDWEAM-----SVVIAREK-SD 1258 (1332)
Q Consensus 1236 ~~~~lYwtd~~~~-----~V~~~~~~-~g 1258 (1332)
++.+||+++...+ +|..++.. +|
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g 293 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCC
Confidence 6779999998665 88877764 44
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-06 Score=100.33 Aligned_cols=286 Identities=12% Similarity=0.029 Sum_probs=157.2
Q ss_pred cCCCeEEEEeCCC----CeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcC----CCCceEEEecC-C
Q psy5806 791 AIGRKIYWTDMNA----QTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRL----TNNRIEMAHMD-G 861 (1332)
Q Consensus 791 ~~~~nLYwtD~~~----~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~----~~~~I~r~~~d-G 861 (1332)
+.++.+|+++... ++|.+.+++.....--+..+ ..| +|+++|...+||++++..++. ....|...+.. +
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 4567899999865 79999998654433333334 469 999999989999998631100 01245555433 2
Q ss_pred CCcEEEe-c-c-----cccCceeEEeCCCCCeEEEEeCC-CCeEEEEccCCCce-eEEeccCCcceEEEEeCCEEEEEeC
Q psy5806 862 TNRAVFE-T-E-----VIWPSCLAIDYSDNPKLYWVDTS-KHTIEYKTLATGRA-KRAYAVQSHPYTLTVLDYYVYWTDV 932 (1332)
Q Consensus 862 ~~~~~l~-~-~-----l~~P~gl~iD~~~~~~lYw~d~~-~~~I~~~~~dG~~~-~~l~~~~~~P~~la~~~~~iywtD~ 932 (1332)
+....|. . . ...|.+++++.++ ++||+++.. .+.|..+|...... ..+. +..-..+...+...|.+..
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~--v~g~~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLD--VPDCYHIFPASPTVFYMNC 236 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEE--cCCceeeccCCCcEEEEEc
Confidence 2222221 1 0 2468899999999 999998864 56777777654322 1111 1110111112223333332
Q ss_pred CCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCc
Q psy5806 933 QHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTR 1012 (1332)
Q Consensus 933 ~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~ 1012 (1332)
.++++..++..++
T Consensus 237 ~dG~~~~V~~~~~------------------------------------------------------------------- 249 (426)
T 3c75_H 237 RDGSLARVDFADG------------------------------------------------------------------- 249 (426)
T ss_dssp TTSSEEEEECCTT-------------------------------------------------------------------
T ss_pred CCCCEEEEECCCC-------------------------------------------------------------------
Confidence 3332222111000
Q ss_pred ceEEEEeecceEEEEe-CCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee------
Q psy5806 1013 EFLLYTSRFGVIRRIS-LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL------ 1085 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~-l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~------ 1085 (1332)
.+..... .-.... .|+ ...+.|.+..+++||+. ..+.++.+++. +....++..
T Consensus 250 ---------~v~~~~~~~~~v~~----~p~-----~~~~~~~~dg~~~~~~s-~~g~V~ViD~~-~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 250 ---------ETKVTNTEVFHTED----ELL-----INHPAFSLRSGRLVWPT-YTGKIFQADLT-AEGATFRAPIEALTE 309 (426)
T ss_dssp ---------CCEEEECCCCSCTT----SCB-----CSCCEECTTTCEEEEEB-TTSEEEEEEEC-SSCEEECCCEESSCT
T ss_pred ---------cEEEEeeeeeccCC----Cce-----eeEeeecCCCCEEEEEe-CCCcEEEEecc-CCceEEeeeeeeccc
Confidence 0000000 000000 010 01234566666666665 34667777754 221111100
Q ss_pred ---cCCCCcee---eEEEecCCeEEEEcCC---------CceEEEEeeCCc-eEEEEecCCCCceEEEEcCCCc-EEEEE
Q psy5806 1086 ---MNDTIRDN---FVIDWVANNIYYIDSQ---------MHTINVARSDGQ-HKKILVNDLMEPLAIAVYPRRG-LLFYS 1148 (1332)
Q Consensus 1086 ---~~~~~p~g---lAvDw~~~~LY~td~~---------~~~I~v~~ldG~-~~~~~~~~~~~P~~iavdp~~g-~Lywt 1148 (1332)
.....|.| ++++..+++||+++.+ .+.|.++|+... ....+..+ ..|.+|+++|... +||.+
T Consensus 310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence 00113555 8999999999999742 357999999744 33334333 3699999999877 89999
Q ss_pred ecCCCCCCCCCcEEEEecCCCceEEEE
Q psy5806 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLV 1175 (1332)
Q Consensus 1149 d~~~~~~~~~~~I~r~~ldG~~~~~l~ 1175 (1332)
+++. +.|..+++.......-+
T Consensus 389 n~~s------~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGT------QTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTT------TEEEEEETTTCCEEEEE
T ss_pred cCCC------CeEEEEECCCCCEEEEe
Confidence 9866 78999998665544333
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-06 Score=98.87 Aligned_cols=316 Identities=10% Similarity=0.016 Sum_probs=174.1
Q ss_pred EEEEecCCCceEEEecCCCCceEEEeCCC-C-CccceeEecCCCeEEEEeCCCCeEEEEeCCC-CceEEEEecCC----C
Q psy5806 753 IYWSDISEKTIERVRFDMTGRERLVVNDL-N-RTESIAVDAIGRKIYWTDMNAQTIMVSDIDG-KNAKVLFWLNL----Y 825 (1332)
Q Consensus 753 lYwsD~~~~~I~r~~~~g~~~~~vi~~~~-~-~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG-~~~~~l~~~~~----~ 825 (1332)
++++....+.|..+++........+..+- . .|.++++++.++.||+++...+.|.+.++.. +....+..... .
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 34444555556665554332222222221 1 4899999999999999999889999999854 43333322111 1
Q ss_pred CCeEEEEeCCCCeEEEEeccc----CcC--CCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEE
Q psy5806 826 RPRSIVVHYGLGLMVWADWSR----TRL--TNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEY 899 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~----~~~--~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~ 899 (1332)
.|.+++++|...+||++..+. ... ....|...+++.............|.+++++.++ +.||+++ +.|..
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~---~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGLG---RDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEES---SSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC-CEEEEeC---CeEEE
Confidence 689999999877999985220 000 0146777777643322222224467889999888 8899883 56777
Q ss_pred EccCCCceeEEec--cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCC
Q psy5806 900 KTLATGRAKRAYA--VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNG 977 (1332)
Q Consensus 900 ~~~dG~~~~~l~~--~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nG 977 (1332)
.++.+........ ....|..+...+.+||.+....+.+.. .+.......
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~-------------------~~~~~~~~~---------- 209 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT-------------------PFYTARKDI---------- 209 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE-------------------EEEEEBTTS----------
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceee-------------------eeecccccc----------
Confidence 7776543322222 112333333344445444333333211 111000000
Q ss_pred CCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCC
Q psy5806 978 GCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSK 1056 (1332)
Q Consensus 978 gCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~ 1056 (1332)
+ . ..|... ... |..+++...... ..++. ....+.+++|++.+
T Consensus 210 ~--------------------------~---~~~~~~-----~~~-v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg 252 (337)
T 1pby_B 210 D--------------------------P---ADPTAY-----RTG-LLTMDLETGEMA--MREVRIMDVFYFSTAVNPAK 252 (337)
T ss_dssp C--------------------------T---TSGGGE-----EEE-EEEEETTTCCEE--EEEEEECSSCEEEEEECTTS
T ss_pred c--------------------------c---cccccc-----ccc-eEEEeCCCCCce--EeecCCCCCceeeEEECCCC
Confidence 0 0 000000 012 333333322111 11111 12346789999999
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLA 1135 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~ 1135 (1332)
+.||.+ .+.|+.+++.++.....+ .....|.++++++.++.||++. ..+.|.++++. ++....+..+ ..|.
T Consensus 253 ~~l~~~---~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~-~~~~i~v~d~~~~~~~~~~~~~-~~~~- 324 (337)
T 1pby_B 253 TRAFGA---YNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGG-ALGDLAAYDAETLEKKGQVDLP-GNAS- 324 (337)
T ss_dssp SEEEEE---ESEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSCEEEEES-BSSEEEEEETTTCCEEEEEECG-GGCC-
T ss_pred CEEEEe---CCeEEEEECCCCcCccee--cCCCceeeEEECCCCCEEEEEc-CCCcEEEEECcCCcEEEEEEcC-CCCc-
Confidence 999998 488999998744333322 2335789999999899999984 46789999987 4444434322 1233
Q ss_pred EEEcCCCcEEEEE
Q psy5806 1136 IAVYPRRGLLFYS 1148 (1332)
Q Consensus 1136 iavdp~~g~Lywt 1148 (1332)
+++ ....+|+.
T Consensus 325 ~~~--~~~~~~~~ 335 (337)
T 1pby_B 325 MSL--ASVRLFTR 335 (337)
T ss_dssp CBT--CCCEEEEC
T ss_pred eeE--eeeEEEec
Confidence 222 24467664
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-05 Score=94.35 Aligned_cols=305 Identities=13% Similarity=0.077 Sum_probs=168.4
Q ss_pred eEecCCCeEEEEeCC----CCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcC----CCCceEEEec
Q psy5806 788 AVDAIGRKIYWTDMN----AQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRL----TNNRIEMAHM 859 (1332)
Q Consensus 788 AvD~~~~nLYwtD~~----~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~----~~~~I~r~~~ 859 (1332)
+..+.++.+|++|.. .++|.|.+++.....--+..+ ..|. |+++|...+||++++...++ ....|...+.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 345678999999986 678999988644333233334 4585 99999988999998521100 0023555444
Q ss_pred CCCC-cEEEecc-------cccCceeEEeCCCCCeEEEEeCC-CCeEEEEccCCCce-eEEeccCCcceEEEEeCCEEEE
Q psy5806 860 DGTN-RAVFETE-------VIWPSCLAIDYSDNPKLYWVDTS-KHTIEYKTLATGRA-KRAYAVQSHPYTLTVLDYYVYW 929 (1332)
Q Consensus 860 dG~~-~~~l~~~-------l~~P~gl~iD~~~~~~lYw~d~~-~~~I~~~~~dG~~~-~~l~~~~~~P~~la~~~~~iyw 929 (1332)
.... ...|.-. ...|.+++++.++ ++||+++.. .+.|..+|...... .++ ++....++.-.+.+.|
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI--~v~g~~~~~P~g~~~~- 192 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRML--DVPDCYHIFPTAPDTF- 192 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEE--ECCSEEEEEEEETTEE-
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEE--ECCCcceeecCCCcee-
Confidence 3221 1222110 2368999999999 999999864 67888888765432 222 1111111111111111
Q ss_pred EeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 930 tD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
...|++|-.+..+..
T Consensus 193 -------------------------------------------------------------~~~~~DG~~~~v~~~---- 207 (386)
T 3sjl_D 193 -------------------------------------------------------------FMHCRDGSLAKVAFG---- 207 (386)
T ss_dssp -------------------------------------------------------------EEEETTSCEEEEECC----
T ss_pred -------------------------------------------------------------EEECCCCCEEEEECC----
Confidence 112223322110000
Q ss_pred cCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec---
Q psy5806 1010 RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM--- 1086 (1332)
Q Consensus 1010 ~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~--- 1086 (1332)
+...+.. ++.. ..+ ... .|+ ..+ ..|+..++++||+.. .++++.+++.+ ...+++-..
T Consensus 208 -~~g~v~~-~~~~-----~~~-~~~----~~~--~~~---~~~~~~dG~~~~vs~-~g~V~v~d~~~-~~~~v~~~~~~~ 268 (386)
T 3sjl_D 208 -TEGTPEI-THTE-----VFH-PED----EFL--INH---PAYSQKAGRLVWPTY-TGKIHQIDLSS-GDAKFLPAVEAL 268 (386)
T ss_dssp -SSSCCEE-EECC-----CCS-CTT----SCB--CSC---CEEETTTTEEEEEBT-TSEEEEEECTT-SSCEECCCEESS
T ss_pred -CCCeEEE-eecc-----eec-ccc----ccc--ccc---ceeEcCCCcEEEEeC-CCEEEEEECCC-Ccceeecceecc
Confidence 0000000 0000 000 000 111 111 155666677777653 67888888762 222211110
Q ss_pred ------CCCCcee---eEEEecCCeEEEEcCC---------CceEEEEeeCCce-EEEEecCCCCceEEEEcCCCc-EEE
Q psy5806 1087 ------NDTIRDN---FVIDWVANNIYYIDSQ---------MHTINVARSDGQH-KKILVNDLMEPLAIAVYPRRG-LLF 1146 (1332)
Q Consensus 1087 ------~~~~p~g---lAvDw~~~~LY~td~~---------~~~I~v~~ldG~~-~~~~~~~~~~P~~iavdp~~g-~Ly 1146 (1332)
....|.| +|++..++.||++... .++|.++|+.... ...+..+ ..|.+|+|+|... +||
T Consensus 269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly 347 (386)
T 3sjl_D 269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLY 347 (386)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEE
T ss_pred ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEE
Confidence 1113555 9999999999998531 3578888887443 3334333 4789999999765 789
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecC
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~ 1190 (1332)
.++++. ..|..++........-+.. ..+|+.|.+..+
T Consensus 348 ~tn~~~------~~VsViD~~t~k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 348 ALSTGD------KTLYIHDAESGEELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp EEETTT------TEEEEEETTTCCEEEEECC-CCSSCCEEEECC
T ss_pred EEcCCC------CeEEEEECCCCcEEEEecC-CCCCceeEECCc
Confidence 989865 6798888865454444543 588999988754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-06 Score=94.91 Aligned_cols=189 Identities=14% Similarity=0.025 Sum_probs=132.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCC--eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSG--NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~--~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~ 1123 (1332)
..||.|+ +++||.+....+ .|+++++.+|.-...+......-.+||+++ +++||+++...+.+.++|.+ ++..
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 4799998 469999986654 899999886654444432222234778887 89999999999999999987 4544
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----CCCCcceEEEecCCCEEEEEE
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----DLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~p~glaiD~~~~~LY~~d 1198 (1332)
..+..+ ..+.+++-| .+.||.++ +. .+|..++........-+.. .+..+|.|... +++||...
T Consensus 121 ~ti~~~-~eG~glt~d--g~~L~~Sd-Gs------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~ 188 (262)
T 3nol_A 121 RSFNYD-GEGWGLTHN--DQYLIMSD-GT------PVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANV 188 (262)
T ss_dssp EEEECS-SCCCCEEEC--SSCEEECC-SS------SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEE
T ss_pred EEEECC-CCceEEecC--CCEEEEEC-CC------CeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEE
Confidence 445433 355666654 67999998 33 6799888765443332221 23556667765 67999998
Q ss_pred cCCCeEEEEecCCCceEEEEe--------------ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS--------------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~--------------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
..++.|.++|.........+. ..-|.|||+ ++.+++||+|.-.=..++++...
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~-----dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW-----DKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE-----ETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE-----cCCCCEEEEECCCCCceEEEEEe
Confidence 889999999996444333332 135689999 66689999999777888887653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-06 Score=91.50 Aligned_cols=190 Identities=15% Similarity=0.023 Sum_probs=133.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
...||.|+. ++||.+.... +.|+++++.+|.-...+......-.+||+++ +++||..+...+.+.++|.+ ++.
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 357999986 7999998664 5899999886644444432222234677777 89999999999999999997 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----CCCCcceEEEecCCCEEEEE
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----DLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----~l~~p~glaiD~~~~~LY~~ 1197 (1332)
...+..+ ..+.+|+-| .+.||.+| +. .+|..++........-+.. .+..+|.|... +++||..
T Consensus 98 ~~ti~~~-~~Gwglt~d--g~~L~vSd-gs------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyan 165 (243)
T 3mbr_X 98 RARFRYP-GEGWALTSD--DSHLYMSD-GT------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLAN 165 (243)
T ss_dssp EEEEECS-SCCCEEEEC--SSCEEEEC-SS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred EEEEeCC-CCceEEeeC--CCEEEEEC-CC------CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEE
Confidence 4445443 356777654 67999998 44 6799888765443333322 13455666654 7899988
Q ss_pred EcCCCeEEEEecCCCceEEEEe---------------ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS---------------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~---------------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
...++.|.++|.........+. ..-|.|||+ ++.+++||+|.-.=..++++...
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~-----d~~~~~lfVTGK~wp~~~~v~~~ 234 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF-----DAEHDRLFVTGKRWPMLYEIRLT 234 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE-----ETTTTEEEEEETTCSEEEEEEEC
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE-----cCCCCEEEEECCCCCcEEEEEEe
Confidence 8889999999996444333332 135689999 56689999999777888888764
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-09 Score=109.93 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=46.9
Q ss_pred ccccccCCCCCceecC-CCCceEeCCcCcCCCCCCCCCCCCC--CCCCCCCCC-CCCCCCEE--ecCCCE
Q psy5806 8 LWVGYLQEIPQYKKCN-RTGACIPAQWQCDNEFDCEMGEDEM--KCPQASPPK-KCSPDEHR--CTTGHC 71 (1332)
Q Consensus 8 ~~~~~~~c~~~~f~C~-~~~~Ci~~~~~CDg~~DC~dgsDE~--~C~~~~~~~-~C~~~~f~--C~~g~C 71 (1332)
..+....|.+.||+|. ++|.|||..|+|||.+||.|||||. +| ... +|.+.+|+ |.++.|
T Consensus 46 ~~~~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C----~~~~tc~~~qF~g~~~~d~C 111 (220)
T 2gtl_N 46 TKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC----DTSVVKAGNVFSGTSTWHGC 111 (220)
T ss_dssp HHHHCCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGG----CGGGGCTTCEEEEEEEECSS
T ss_pred hcCCCCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccC----CCCCccCCcceeeEecCChh
Confidence 3566778999999995 3689999999999999999999996 88 334 77766554 444433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-05 Score=93.60 Aligned_cols=297 Identities=8% Similarity=-0.023 Sum_probs=171.6
Q ss_pred CCCCCeEEEEeC-CCC---eEEEEccCCCceeEEeccCCcceEEEEe--CCEEEEEeCC---------CCEEEEEECCCC
Q psy5806 881 YSDNPKLYWVDT-SKH---TIEYKTLATGRAKRAYAVQSHPYTLTVL--DYYVYWTDVQ---------HSKIYRANKYDV 945 (1332)
Q Consensus 881 ~~~~~~lYw~d~-~~~---~I~~~~~dG~~~~~l~~~~~~P~~la~~--~~~iywtD~~---------~~~i~~~~~~~g 945 (1332)
... +++|.+|. ..+ .|..+|++.............| ++++. +.++|.++.. .+.|..++..+.
T Consensus 30 ~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 344 68999987 555 7788887643322222233456 77765 6799999852 456666665544
Q ss_pred eEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEee---cc
Q psy5806 946 KDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSR---FG 1022 (1332)
Q Consensus 946 ~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~---~~ 1022 (1332)
+++.. .+.. ....... + .-|.++.+..| ..+|++++. +.
T Consensus 108 ~~~~~-i~~~-----~~~~~~~---------------------g---~~p~~~~~spD--------G~~l~v~n~~~~~~ 149 (373)
T 2mad_H 108 LPIAD-IELP-----DAPRFDV---------------------G---PYSWMNANTPN--------NADLLFFQFAAGPA 149 (373)
T ss_pred cEEEE-EECC-----Ccccccc---------------------C---CCccceEECCC--------CCEEEEEecCCCCe
Confidence 32221 0000 0000000 0 12456666554 346666653 34
Q ss_pred eEEEEeCCCCCCCCcccc-cCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee---cCCCCc--eeeEE
Q psy5806 1023 VIRRISLDTADLLPVTLP-FPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---MNDTIR--DNFVI 1096 (1332)
Q Consensus 1023 ~i~~i~l~~~~~~~~~~p-i~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---~~~~~p--~glAv 1096 (1332)
|.-|+ +.. .++.. ++. +..+.+.+..++.|++....+++..+++ .+.....+.. .....| ...++
T Consensus 150 -v~viD-~t~---~~~~~~i~~---~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 150 -VGLVV-QGG---SSDDQLLSS---PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred -EEEEE-CCC---CEEeEEcCC---CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence 56565 433 22222 221 1223445666778888888889888887 4433322110 011122 23455
Q ss_pred EecCCeEEEEcCCCceEEEEeeCCceEEEEe-----c-----CCCCceE---EEEcCCCcEEEEEecCCCC---CCCCCc
Q psy5806 1097 DWVANNIYYIDSQMHTINVARSDGQHKKILV-----N-----DLMEPLA---IAVYPRRGLLFYSHWGLYD---NSPTTK 1160 (1332)
Q Consensus 1097 Dw~~~~LY~td~~~~~I~v~~ldG~~~~~~~-----~-----~~~~P~~---iavdp~~g~Lywtd~~~~~---~~~~~~ 1160 (1332)
+..++.+||... .+.+.++++.+...+++. . ....|.+ ++++|..++||++...... ......
T Consensus 221 ~~~~~~~~~~~~-~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 221 ANKSGRIVWPVY-SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred EecCCEEEEEcC-CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 666777777663 457888888654322211 0 1113555 8999999999998642100 012357
Q ss_pred EEEEecCCCceEEEEecCCCCcceEEEecCCC-EEEEEEcCCCeEEEEecCCCceE-EEEe-ecccceEEE
Q psy5806 1161 IEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR-RLFWADSTNKRIEYCDFFGRSRK-IVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1161 I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~-~LY~~d~~~~~I~~~d~dG~~~~-~~~~-~~~P~glav 1228 (1332)
|..+++.......-+..+ ..|.+|+++++++ +||.+....+.|..+|....... .++. +..|.+|.+
T Consensus 300 V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred EEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEE
Confidence 999999766654444433 4699999999999 88888877899999999755443 3355 889999987
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=0.0021 Score=87.96 Aligned_cols=572 Identities=9% Similarity=0.014 Sum_probs=291.7
Q ss_pred ccceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcE
Q psy5806 466 VKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPT 545 (1332)
Q Consensus 466 ~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~ 545 (1332)
...+.+++|.+....|... ..++.|.-.++........+......+..+++.+.++.|.. -+..+.|.+-++......
T Consensus 615 ~~~v~~~~~s~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASC-GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT-CSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCEE
T ss_pred cccEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEE-EeCCCeEEEEECCCCceE
Confidence 3457789999866555544 46777877777644333334444556778999886665544 445678999998654333
Q ss_pred EEEeCCCCCceEEEEecCCC-eEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEE
Q psy5806 546 LLFWQNLSEPRDIAVNPIGG-IMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFT 624 (1332)
Q Consensus 546 ~l~~~~~~~P~~iavdp~~G-~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~ 624 (1332)
..+.........+++.|... .++.+- +....|..-+++.......+...-...+.+++.+.++.|..+. ..+.|...
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~dg~v~vw 770 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSNHLLLATG-SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLW 770 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEE-ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE-SSSEEEEE
T ss_pred EEEcCCCCcEEEEEEecCCCceEEEEE-eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE-CCCeEEEE
Confidence 33334455667888888533 233222 2233444444544443333333345567888887666555443 33556555
Q ss_pred ecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCc--CcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCcc
Q psy5806 625 NLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSK--KTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702 (1332)
Q Consensus 625 ~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~--~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC 702 (1332)
++.......... ..... ...+-..... ...| ..+.+|
T Consensus 771 d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~------------~v~~-----~~~s~d---- 809 (1249)
T 3sfz_A 771 DVRSANERKSIN--------------------VKRFFLSSEDPPEDVEV------------IVKC-----CSWSAD---- 809 (1249)
T ss_dssp EGGGTEEEEEEE--------------------CCCCC--------CCCC------------CBCC-----CCBCTT----
T ss_pred eCCCCcccceec--------------------ccccccccCCccccccc------------eEEE-----EEECCC----
Confidence 554332111110 00000 0000000000 0000 111222
Q ss_pred ccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCC
Q psy5806 703 SENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLN 782 (1332)
Q Consensus 703 ~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~ 782 (1332)
..+++++....++..++...... ..+.......+.++++.+.+..++.+ ...+.|...+.+.......+.....
T Consensus 810 ----g~~l~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 810 ----GDKIIVAAKNKVLLFDIHTSGLL-AEIHTGHHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp ----SSEEEEEETTEEEEEETTTCCEE-EEEECSSSSCCCEEEECSSTTEEEEE-CSSSCEEEEETTTTEEEEEECCCSS
T ss_pred ----CCEEEEEcCCcEEEEEecCCCce-eEEcCCCCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeeecCCCcc
Confidence 33455555666766666543211 11111234457788888876555544 4567787777765443333444456
Q ss_pred CccceeEecCCCeEEEEeCCCCeEEEEeCCCCc------------------------------eEEE-------EecCCC
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN------------------------------AKVL-------FWLNLY 825 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~------------------------------~~~l-------~~~~~~ 825 (1332)
.+.++++.+.++.|+ +-+..+.|.+.++.+.. .... ......
T Consensus 884 ~v~~v~~spdg~~l~-s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 884 WVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp CEEEEEECTTSSEEE-EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred ceEEEEECCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 678888887776555 44445567776643100 0000 000112
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCC
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT 904 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG 904 (1332)
....+++.|...+++..... +.|....+........... -....++++...+ +.|..+ ...+.|...++..
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~-~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDED------GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISS-SEDSVIQVWNWQT 1034 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETT------SCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEE-CSSSBEEEEETTT
T ss_pred cEEEEEEcCCCCEEEEEcCC------CCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEE-cCCCEEEEEECCC
Confidence 35677788775555554422 3566655553332222222 4456678888877 555444 3456777777765
Q ss_pred CceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccc
Q psy5806 905 GRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCL 984 (1332)
Q Consensus 905 ~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl 984 (1332)
.....+.........+++..+..+.+-...+.|...+..+++.+. .+... .+....+++
T Consensus 1035 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~---------~~~~~------------~~~v~~~~~ 1093 (1249)
T 3sfz_A 1035 GDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER---------DFTCH------------QGTVLSCAI 1093 (1249)
T ss_dssp TEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCE---------EEECC------------SSCCCCEEE
T ss_pred CceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeE---------EEccc------------CCcEEEEEE
Confidence 443322222223345555543333333344555544444331111 11000 000000111
Q ss_pred cCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEe
Q psy5806 985 RNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFAD 1063 (1332)
Q Consensus 985 ~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd 1063 (1332)
.|.| .+|+....+..|+..++..... ...+.+ ...+.+++|++.++.|..++
T Consensus 1094 ---------s~d~---------------~~l~s~s~d~~v~iwd~~~~~~---~~~l~~h~~~v~~~~~s~dg~~lat~~ 1146 (1249)
T 3sfz_A 1094 ---------SSDA---------------TKFSSTSADKTAKIWSFDLLSP---LHELKGHNGCVRCSAFSLDGILLATGD 1146 (1249)
T ss_dssp ---------CSSS---------------SSCEEECCSSCCCEECSSSSSC---SBCCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred ---------CCCC---------------CEEEEEcCCCcEEEEECCCcce---eeeeccCCCcEEEEEECCCCCEEEEEe
Confidence 1111 1222222222144444432221 111222 23467899999888777765
Q ss_pred CCCCeEEEEECCCCCCceeE--------eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCce
Q psy5806 1064 MRSGNLRTFDMSDSTRIKPI--------PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPL 1134 (1332)
Q Consensus 1064 ~~~~~I~~~~l~~g~~~~~i--------~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~ 1134 (1332)
..+.|+..++.++.....+ .....+.+.++++.+.++.|..++ +.|.++++. |+....+......+.
T Consensus 1147 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~g~~~~~~~~~~~~i~ 1222 (1249)
T 3sfz_A 1147 -DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG---GYLKWWNVATGDSSQTFYTNGTNLK 1222 (1249)
T ss_dssp -TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES---SSEEEBCSSSCBCCCCCCCSSCCCC
T ss_pred -CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC---CeEEEEECCCCceeeeeeccCCccc
Confidence 6778888888765544332 112234578899998888887775 689999986 444333433445678
Q ss_pred EEEEcCCCcEEEEEe
Q psy5806 1135 AIAVYPRRGLLFYSH 1149 (1332)
Q Consensus 1135 ~iavdp~~g~Lywtd 1149 (1332)
+++++|...+|+.++
T Consensus 1223 ~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1223 KIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CCEECSSSCCEEEEC
T ss_pred EEEECCCCCEEEEec
Confidence 899999666666554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-07 Score=105.92 Aligned_cols=293 Identities=10% Similarity=0.013 Sum_probs=171.4
Q ss_pred ceEEEEecCCC----ceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeC---------CCCeEEEEeCCC-Cce
Q psy5806 751 EYIYWSDISEK----TIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDM---------NAQTIMVSDIDG-KNA 816 (1332)
Q Consensus 751 ~~lYwsD~~~~----~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~---------~~~~I~v~~ldG-~~~ 816 (1332)
.++|+++...+ .|..++.+......-+..+. .| |+++++.++.||+++. ..+.|.+.++.. +..
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~-~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCC-CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 57888888766 66676665443333344443 48 9999999999999984 357899999854 333
Q ss_pred EEEEec------CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEE
Q psy5806 817 KVLFWL------NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWV 890 (1332)
Q Consensus 817 ~~l~~~------~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~ 890 (1332)
..+... ....|++|+++|..++||+++++.. ..+....+|-.....+ .-|.+..+...+ +++|.+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~----~~v~V~~iD~~tv~~i----~v~~~~~~~p~g-~~~~~~ 180 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS----AAAGLSVPGASDDQLT----KSASCFHIHPGA-AATHYL 180 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS----CEEEEEETTTEEEEEE----ECSSCCCCEEEE-TTEEEC
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC----CeEEEEEEchhhceEE----ECCCceEEccCC-CeEEEE
Confidence 444222 1257999999999889999987633 3455522332211222 112223334455 678888
Q ss_pred eCCCCeEEEEccCC----CceeE-----EeccCCcceEEEEeCCEEEEEeCCCCEEEEEECCCC-eEEEeeeecCcceEE
Q psy5806 891 DTSKHTIEYKTLAT----GRAKR-----AYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV-KDIVEFAQVDRPWLV 960 (1332)
Q Consensus 891 d~~~~~I~~~~~dG----~~~~~-----l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g-~~i~~~~~~~i~~~~ 960 (1332)
....+++..++++. .+... +......|.. .-.++.+||+.. +.+..++...+ ..+
T Consensus 181 ~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~--~~V~viD~~~~~~~v------------ 245 (368)
T 1mda_H 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA--SSILQGDIPAAGATM------------ 245 (368)
T ss_dssp CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS--SCCEEEECCSSCCEE------------
T ss_pred EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC--CEEEEEECCCCcceE------------
Confidence 77777877788765 11111 0111234542 223567777765 55554442211 000
Q ss_pred eccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccc
Q psy5806 961 RAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLP 1040 (1332)
Q Consensus 961 ~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~p 1040 (1332)
+..+.+.... ..
T Consensus 246 ---------------------------------------------------------------~~~~~~~~~~-----~~ 257 (368)
T 1mda_H 246 ---------------------------------------------------------------KAAIDGNESG-----RK 257 (368)
T ss_dssp ---------------------------------------------------------------ECCCCSSCTH-----HH
T ss_pred ---------------------------------------------------------------EEEEEecccc-----cc
Confidence 0001110000 00
Q ss_pred cCCccceEE---EEEeCCCcEEEEEeC-C-------CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC-
Q psy5806 1041 FPEYMSSIF---FDYHYSKNLIYFADM-R-------SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS- 1108 (1332)
Q Consensus 1041 i~~~~~~~~---id~d~~~~~lY~sd~-~-------~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~- 1108 (1332)
.....|.+ +++++.++++|++.. . .+.+..+++........+- ....|.||++++.++.||++..
T Consensus 258 -~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~--vg~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 258 -ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp -HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEET
T ss_pred -ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE--CCCCcceEEECCCCCEEEEEccC
Confidence 00001111 467888889998764 2 2345588876433222222 1226999999998999999988
Q ss_pred CCceEEEEeeCC-ceEEEEecCCCCceEEEEcCC
Q psy5806 1109 QMHTINVARSDG-QHKKILVNDLMEPLAIAVYPR 1141 (1332)
Q Consensus 1109 ~~~~I~v~~ldG-~~~~~~~~~~~~P~~iavdp~ 1141 (1332)
..+.|.++|+.. +....+..+ ..|.+|+++++
T Consensus 335 ~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~~~~ 367 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVELD-KGPESLSVQNE 367 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCC-SCCCEEECCCC
T ss_pred CCCeEEEEECCCCcEEEEEECC-CCCCEEEeecC
Confidence 689999999974 444445434 78999999874
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-09 Score=109.03 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=53.1
Q ss_pred cccccCCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCC--CCCCCCCCC-CCCCCCEEecCCCEEEeeeecCCCCCC
Q psy5806 9 WVGYLQEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEM--KCPQASPPK-KCSPDEHRCTTGHCILKTWLCDGIPDC 84 (1332)
Q Consensus 9 ~~~~~~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~--~C~~~~~~~-~C~~~~f~C~~g~Ci~~~~~CDg~~DC 84 (1332)
.++...|.+.+|+|.+ +|.|||..|+|||+.||.|||||. +|. .. .|...+|.+. ....+|
T Consensus 48 ~~~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~----~~~~~~~~~~~g~-----------~~~~~C 112 (217)
T 2gtl_M 48 NLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS----LNITHVGSSYTGL-----------ATWTSC 112 (217)
T ss_dssp TTSCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC----CGGGCTTCEEEEE-----------EEESSS
T ss_pred cCCCCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCC----CCcccCCcccccc-----------cCcccC
Confidence 5667789999999973 699999999999999999999998 783 22 3444455541 223589
Q ss_pred CCCCCccc
Q psy5806 85 SLGEDERN 92 (1332)
Q Consensus 85 ~DgsDE~~ 92 (1332)
.+++||..
T Consensus 113 ~~~~pe~~ 120 (217)
T 2gtl_M 113 EDLNPDHA 120 (217)
T ss_dssp CSCCSEEE
T ss_pred CCCCCCee
Confidence 99998865
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=100.44 Aligned_cols=221 Identities=10% Similarity=0.027 Sum_probs=142.3
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-----CCCceeeEEEe
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-----DTIRDNFVIDW 1098 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-----~~~p~glAvDw 1098 (1332)
|..+++...... ...+.+....+.++++++.++.+|+++...+.|+.+++.++.....+.... ...|.++++++
T Consensus 23 v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 23 LHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp EEEEETTTTEEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred EEEEECCCCcEE-EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 777776543211 112222222578899999999999999888999999987443332332111 22489999999
Q ss_pred cCCeEEEEcCC-----------CceEEEEeeCC-ceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEE
Q psy5806 1099 VANNIYYIDSQ-----------MHTINVARSDG-QHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1099 ~~~~LY~td~~-----------~~~I~v~~ldG-~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~ 1164 (1332)
.++.||++... .+.|.++++.. +.... .......+.+++++|.. .||++. . .|...
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~l~~~~--~-------~i~~~ 171 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAG--P-------DIYKM 171 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEEES--S-------SEEEE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC-cEEEcc--C-------cEEEE
Confidence 99999999854 46899999874 22211 22233468889999954 477752 1 25555
Q ss_pred ecCCCceEEEEecC------------------------------------------------------------------
Q psy5806 1165 YLDGSYRTVLVEED------------------------------------------------------------------ 1178 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~------------------------------------------------------------------ 1178 (1332)
++........+...
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 55333222221111
Q ss_pred --CCCcceEEEec-CCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1179 --LAFPNELAIDF-KQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1179 --l~~p~glaiD~-~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
-..|.++++++ +++.||.+ .++|..+|+........+. ...|.++++ ++.+++||.+ ...+.|..++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~~~-~~~~~v~v~d 322 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAF-----DKKGDKLYLG-GTFNDLAVFN 322 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEE-----CSSSSCEEEE-SBSSEEEEEE
T ss_pred cCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCCCCccceEE-----CCCCCEEEEe-cCCCeEEEEe
Confidence 01456677778 88899988 5789999997654433444 667899999 4456788886 4569999999
Q ss_pred ecCCCCcceEEEE
Q psy5806 1255 EKSDTGQWDVHLI 1267 (1332)
Q Consensus 1255 ~~~g~~~~~~~~~ 1267 (1332)
..++ +.+..+
T Consensus 323 ~~~~---~~~~~~ 332 (349)
T 1jmx_B 323 PDTL---EKVKNI 332 (349)
T ss_dssp TTTT---EEEEEE
T ss_pred cccc---ceeeee
Confidence 8877 544444
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=0.00028 Score=94.80 Aligned_cols=203 Identities=13% Similarity=0.031 Sum_probs=128.7
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC---------CceEEE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ---------MHTINV 1115 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~---------~~~I~v 1115 (1332)
..+..++|++.+++|+++. ..+.|+.+++.+|. ...+.....+...++++.+.++.|.++... ...|.+
T Consensus 379 ~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred cceeeeEECCCCCEEEEEC-CCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 4567899999999998876 56789999987443 333332334456889999989989887542 358999
Q ss_pred EeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCC-----------CCCCCcEEEEe-------------------
Q psy5806 1116 ARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD-----------NSPTTKIEKVY------------------- 1165 (1332)
Q Consensus 1116 ~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~-----------~~~~~~I~r~~------------------- 1165 (1332)
+++++.....+......+..++++|...+|||+...... .....+++.+.
T Consensus 457 ~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1045)
T 1k32_A 457 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 536 (1045)
T ss_dssp EETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred EECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccc
Confidence 999866544455555668889999988889988642200 00011233322
Q ss_pred -----cCCCc-eEEEEecCCCCcceEEEecCCCEEEE------------EEcCCCeEEEEecCCCceEEEEeecccceEE
Q psy5806 1166 -----LDGSY-RTVLVEEDLAFPNELAIDFKQRRLFW------------ADSTNKRIEYCDFFGRSRKIVISKVAPYGLS 1227 (1332)
Q Consensus 1166 -----ldG~~-~~~l~~~~l~~p~glaiD~~~~~LY~------------~d~~~~~I~~~d~dG~~~~~~~~~~~P~gla 1227 (1332)
++|.. +...+...-....++++.++++.+|. +.....+|+.+|+.+...+.+. ..+.+++
T Consensus 537 ~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~v~~~~ 614 (1045)
T 1k32_A 537 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--NNLTDLR 614 (1045)
T ss_dssp CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--EEEEEEE
T ss_pred cccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee--cCcceEE
Confidence 22211 11111111133457888876644443 2334568999999776655554 3455667
Q ss_pred EecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+ ++++.+|+++... .|..++..++
T Consensus 615 ~-----S~DG~~l~~~~~~--~i~~~d~~~~ 638 (1045)
T 1k32_A 615 L-----SADRKTVMVRKDD--GKIYTFPLEK 638 (1045)
T ss_dssp E-----CTTSCEEEEEETT--SCEEEEESSC
T ss_pred E-----CCCCCEEEEEcCC--cEEEEeCccC
Confidence 7 5578889998754 7888888777
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=105.59 Aligned_cols=185 Identities=12% Similarity=0.035 Sum_probs=129.8
Q ss_pred CCCcccccCCccceEEEEEeCCCcEEEEEeCCC-------------------------------------CeEEEEECCC
Q psy5806 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS-------------------------------------GNLRTFDMSD 1076 (1332)
Q Consensus 1034 ~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~-------------------------------------~~I~~~~l~~ 1076 (1332)
...+...|+--.+|.++++++.++++|+++.++ +.+..++...
T Consensus 184 t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~ 263 (595)
T 1fwx_A 184 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK 263 (595)
T ss_dssp TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG
T ss_pred CCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc
Confidence 344555544324788999999999999999665 2356666542
Q ss_pred CCCce--eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce------------EEE-EecCCCCceEEEEcCC
Q psy5806 1077 STRIK--PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH------------KKI-LVNDLMEPLAIAVYPR 1141 (1332)
Q Consensus 1077 g~~~~--~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~------------~~~-~~~~~~~P~~iavdp~ 1141 (1332)
..... ..+ .-...|+|+++++.++.+|+++...++|.+++++... ... +..+ ..|++++++|
T Consensus 264 ~~~~~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~- 340 (595)
T 1fwx_A 264 EASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDG- 340 (595)
T ss_dssp GGCCSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECT-
T ss_pred cCCceeEEEE-ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcceEEECC-
Confidence 00111 111 1224899999999999999999999999999998331 111 3334 5799999999
Q ss_pred CcEEEEEecCCCCCCCCCcEEEEecCCC--------ceEEE--EecCCCCc------ceEEEecCCCEEEEEEcCC-CeE
Q psy5806 1142 RGLLFYSHWGLYDNSPTTKIEKVYLDGS--------YRTVL--VEEDLAFP------NELAIDFKQRRLFWADSTN-KRI 1204 (1332)
Q Consensus 1142 ~g~Lywtd~~~~~~~~~~~I~r~~ldG~--------~~~~l--~~~~l~~p------~glaiD~~~~~LY~~d~~~-~~I 1204 (1332)
+|++|.+.+-. +.|.+.+++.. ...++ +... .+| .|++++++++.||.++..+ +++
T Consensus 341 dG~aY~t~~ld------sqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 341 RGNAYTSLFLD------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp TSEEEEEETTT------TEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred CCeEEEEEecC------CcEEEEEhhHhhhhhcccccceeEEEeecc-cccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 55999999876 77888888761 12233 2222 244 6788899999999999987 788
Q ss_pred -----------EEEecCCCceEEEEe---ecccceEEE
Q psy5806 1205 -----------EYCDFFGRSRKIVIS---KVAPYGLSV 1228 (1332)
Q Consensus 1205 -----------~~~d~dG~~~~~~~~---~~~P~glav 1228 (1332)
.-+|..|...+.+.. ...|...++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i 451 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIA 451 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEE
T ss_pred ccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEE
Confidence 888998877666654 667766655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-06 Score=95.33 Aligned_cols=89 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred EEEeCCCcEEEEEeC----------CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1050 FDYHYSKNLIYFADM----------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~----------~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
+++++.++++|++.. ..++|..+++.++.....+- .+ . |.+||+++.++.||+++. +.|.++++.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~-~-p~~ia~spdg~~l~v~n~--~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GR-D-ALSMTIDQQRNLMLTLDG--GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CT-T-CCEEEEETTTTEEEEECS--SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cC-C-eeEEEECCCCCEEEEeCC--CeEEEEECC
Confidence 678999999999864 13589999987543333332 22 3 999999999999999985 899999987
Q ss_pred -C--ceEEEEecCCCCceEEEEcCCCc
Q psy5806 1120 -G--QHKKILVNDLMEPLAIAVYPRRG 1143 (1332)
Q Consensus 1120 -G--~~~~~~~~~~~~P~~iavdp~~g 1143 (1332)
| +....+..--..|++|+++|..+
T Consensus 334 t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCcceeeEEeccCCCCcEEEEecCCCC
Confidence 4 33333433337899999999543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-06 Score=97.82 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=135.0
Q ss_pred ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCC-------CccceeE---ecCCCeEEE-EeC-------
Q psy5806 740 MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLN-------RTESIAV---DAIGRKIYW-TDM------- 801 (1332)
Q Consensus 740 ~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~-------~p~glAv---D~~~~nLYw-tD~------- 801 (1332)
-|.+++||...+++|+++...+.|.++++++...+++...++. .+.||.+ |.. +.|++ ++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccccc
Confidence 3667899999999999999999999999986555555333332 5789999 677 55776 562
Q ss_pred -----CCCeEEEEeCC----CCceEEEEec------------CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC
Q psy5806 802 -----NAQTIMVSDID----GKNAKVLFWL------------NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860 (1332)
Q Consensus 802 -----~~~~I~v~~ld----G~~~~~l~~~------------~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d 860 (1332)
+...+.+.+++ |+....+-.. ....|.+||+|+. |..|+++...- +.|.|.+.|
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt~s~~~----~~I~rV~pd 167 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVAFALGM----PAIARVSAD 167 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEEEEESS----CEEEEECTT
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEeCCCCC----CeEEEEeCC
Confidence 35678889988 5444333211 1124889999986 99999986552 479999999
Q ss_pred CCCcEEEecc------cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-------cCCcceEE-EE-eCC
Q psy5806 861 GTNRAVFETE------VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-------VQSHPYTL-TV-LDY 925 (1332)
Q Consensus 861 G~~~~~l~~~------l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-------~~~~P~~l-a~-~~~ 925 (1332)
|+....+... ...++||+++.++ ..|+..+. .++|.+++++-..+..+.. .+..|-+| +. +++
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 9966555422 3347899999999 89999998 9999999988432211221 35677785 44 466
Q ss_pred EE-EEEeCCCCEE
Q psy5806 926 YV-YWTDVQHSKI 937 (1332)
Q Consensus 926 ~i-ywtD~~~~~i 937 (1332)
.+ +.++...+.+
T Consensus 246 ~vllV~~~~~~~~ 258 (334)
T 2p9w_A 246 ESVLVGARAPYAI 258 (334)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEEcCCCCEE
Confidence 55 8888766543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8e-06 Score=94.63 Aligned_cols=177 Identities=10% Similarity=0.038 Sum_probs=112.8
Q ss_pred ecceEEEEeCCCCCCCCcccccCC------ccceEEEEEeCC---CcEEEEEeCC--CCe--EEEEECCCCCCceeEee-
Q psy5806 1020 RFGVIRRISLDTADLLPVTLPFPE------YMSSIFFDYHYS---KNLIYFADMR--SGN--LRTFDMSDSTRIKPIPL- 1085 (1332)
Q Consensus 1020 ~~~~i~~i~l~~~~~~~~~~pi~~------~~~~~~id~d~~---~~~lY~sd~~--~~~--I~~~~l~~g~~~~~i~~- 1085 (1332)
... |..++++........+.+.+ .-+|.||++... ..+||++|-. ..+ |++++.. +...+++.
T Consensus 82 ~G~-I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~--~~~~~~~~~ 158 (355)
T 3sre_A 82 SGK-ILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE--EKSLLHLKT 158 (355)
T ss_dssp CCE-EEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT--TTEEEEEEE
T ss_pred CCe-EEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECC--CCEEEEEec
Confidence 455 77777653322222233333 237999998662 3479999866 234 5566643 33333332
Q ss_pred ---cCCCCceeeEEEecCCeEEEEcCC-----------------CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1086 ---MNDTIRDNFVIDWVANNIYYIDSQ-----------------MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1086 ---~~~~~p~glAvDw~~~~LY~td~~-----------------~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
..+..|+++++|. .+.+|+++.- .++| ++++....+++..++..|+|||++|....|
T Consensus 159 ~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v--yr~d~~~~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFV--TYYSPNDVRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp ECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEE--EEECTTCCEEEEEEESSEEEEEECTTSSEE
T ss_pred cccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEE--EEEECCeEEEeecCCcccCcceECCCCCEE
Confidence 2356899999996 5677777541 2345 444533444566788999999999988899
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCc----eEEEEecCCCCcceEEEecCCCEEEEEEc-CCCeEEEEecC
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSY----RTVLVEEDLAFPNELAIDFKQRRLFWADS-TNKRIEYCDFF 1210 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~----~~~l~~~~l~~p~glaiD~~~~~LY~~d~-~~~~I~~~d~d 1210 (1332)
|++|... .+|++.++++.. +++ +.. -..|.||++|.+++.||++.. ...+|.+++.+
T Consensus 236 Yvadt~~------~~I~~~~~~~~g~l~~~~~-~~~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELLA------HKIHVYEKHANWTLTPLRV-LSF-DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGGG------TEEEEEEECTTSCEEEEEE-EEC-SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCC------CeEEEEEECCCCcEecCEE-EeC-CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 9999876 789999987432 222 332 367999999975678998653 33344444444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-06 Score=102.99 Aligned_cols=188 Identities=8% Similarity=-0.068 Sum_probs=138.1
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC---CceEEEEecCCCC
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD---GQHKKILVNDLME 1132 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld---G~~~~~~~~~~~~ 1132 (1332)
.+++|+++...++|..+++.++.-...+- ....|+++++++.++.||+++. .+.|.++++. ++....+..+ ..
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G-~~ 241 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG-SE 241 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecC-CC
Confidence 57899999999999999976443232222 2347899999999999999974 5689999994 4333335445 57
Q ss_pred ceEEEEc----CCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-----------CCCcceEEEecCCCEEEEE
Q psy5806 1133 PLAIAVY----PRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-----------LAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1133 P~~iavd----p~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-----------l~~p~glaiD~~~~~LY~~ 1197 (1332)
|++|+++ |...+||+++... +.|..++.........+... -..+.+|...+.+..+|++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~------~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CceeEEccccCCCCCEEEEEEccC------CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 9999999 6777999999765 66777765444433333321 0134578888888889998
Q ss_pred EcCCCeEEEEecCCCceEEE--Ee-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIV--IS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~--~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...+++|..+|+.......+ +. ..+|.++.+ ++.+.++|+++..+++|..+|..++
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~-----~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGL-----DGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE-----CTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceE-----CCCCCEEEEEeCCCCeEEEEECCCC
Confidence 88899999999975432222 23 667778888 5678899999999999999999887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=105.70 Aligned_cols=196 Identities=9% Similarity=0.021 Sum_probs=137.2
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEE--ecCCeEEEEc-----------------CCCceEE
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID--WVANNIYYID-----------------SQMHTIN 1114 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvD--w~~~~LY~td-----------------~~~~~I~ 1114 (1332)
+.+++||+.|..+++|.+++++...-.+++.......|+|+++. +.++.||++. ...+.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 35679999999999999999884433333322334579999984 7899999994 3355788
Q ss_pred EEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCC--------CC-----------------------CCcEE
Q psy5806 1115 VARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDN--------SP-----------------------TTKIE 1162 (1332)
Q Consensus 1115 v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~--------~~-----------------------~~~I~ 1162 (1332)
++|.+.....- +..+- +|.+++++|..+++|+|....... .. -+.|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 88887432222 33342 799999999999999998553000 00 01244
Q ss_pred EEecCC---CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc----------eEEEEe---ecccceE
Q psy5806 1163 KVYLDG---SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS----------RKIVIS---KVAPYGL 1226 (1332)
Q Consensus 1163 r~~ldG---~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~----------~~~~~~---~~~P~gl 1226 (1332)
.++... +.....+..+ ..|.|+.++++++.+|+++...++|..+|++-.. ..++.. +..|.++
T Consensus 258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE
T ss_pred EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE
Confidence 444432 1101223222 4799999999999999999999999999998321 122323 8899999
Q ss_pred EEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1227 SVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1227 av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
++ ++ +|++|.+.+.+++|.+++..+
T Consensus 337 aF-----~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 337 AF-----DG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EE-----CT-TSEEEEEETTTTEEEEEEHHH
T ss_pred EE-----CC-CCeEEEEEecCCcEEEEEhhH
Confidence 99 33 449999999999999999765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=95.94 Aligned_cols=154 Identities=11% Similarity=-0.003 Sum_probs=110.8
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
..||+++ ++.||++....++|.+++++ |+....+........||+++ +++||.+.|.+ +.+...+....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~------~~v~V~D~~Tl 126 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTE------GLLFTWSGMPP 126 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSS------CEEEEEETTTT
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccC------CEEEEEECCcC
Confidence 3799999 79999999998889999987 55443342221223446665 56999999987 88999998665
Q ss_pred ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-------ecccceEEEecCCccccccEEEE
Q psy5806 1170 YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-------KVAPYGLSVRQSPGKAFIVELYW 1242 (1332)
Q Consensus 1170 ~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-------~~~P~glav~~~~~~~~~~~lYw 1242 (1332)
....-+... ..+-||+- ++++||.+| ++++|..+|........-+. ...+..|.. .+++||.
T Consensus 127 ~~~~ti~~~-~eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~-------~dG~lya 195 (268)
T 3nok_A 127 QRERTTRYS-GEGWGLCY--WNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC-------ANGVIYA 195 (268)
T ss_dssp EEEEEEECS-SCCCCEEE--ETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-------ETTEEEE
T ss_pred cEEEEEeCC-CceeEEec--CCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE-------eCCEEEE
Confidence 544444432 33446664 589999999 58999999987544222222 224456677 6889999
Q ss_pred EECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1243 TDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1243 td~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
..|.++.|.++|..+| +....+.
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Id 218 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVID 218 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEE
T ss_pred EECCCCeEEEEeCCCC---cEEEEEE
Confidence 9999999999999999 6655554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-06 Score=91.95 Aligned_cols=179 Identities=12% Similarity=0.182 Sum_probs=119.1
Q ss_pred eEEEEeec----ceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1014 FLLYTSRF----GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1014 ~ll~~~~~----~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
+|+.++.. . |+.+++++..... ..+++.-....|++++ +++||.++...+.++.+++++......+-.
T Consensus 54 ~LyestG~~g~S~-v~~vD~~Tgkv~~-~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~---- 125 (262)
T 3nol_A 54 YFYESTGLNGRSS-IRKVDIESGKTLQ-QIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY---- 125 (262)
T ss_dssp EEEEEEEETTEEE-EEEECTTTCCEEE-EEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC----
T ss_pred EEEEECCCCCCce-EEEEECCCCcEEE-EEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC----
Confidence 56666643 5 8888876543221 1223322223566665 679999999999999999875544444432
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEEEec-----CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKILVN-----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r 1163 (1332)
.++|.++.+.++.||.+|. .++|.++|... +....+.. .+..++.+... +|.||...|.. ..|.+
T Consensus 126 ~~eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~------~~I~v 196 (262)
T 3nol_A 126 DGEGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQT------NKIVR 196 (262)
T ss_dssp SSCCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS------SEEEE
T ss_pred CCCceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccC------CeEEE
Confidence 1355555555999999996 67899998874 43333322 12344556654 78999998876 78999
Q ss_pred EecCCCceEEEEec-C-----------CCCcceEEEecCCCEEEEEEcCCCeEEEEec
Q psy5806 1164 VYLDGSYRTVLVEE-D-----------LAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209 (1332)
Q Consensus 1164 ~~ldG~~~~~l~~~-~-----------l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~ 1209 (1332)
++..-......+.. + ..-|||||+|+++++||++-..=.+++.+.+
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 99965555444432 1 2368999999999999999877667777655
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.57 E-value=6.9e-07 Score=107.99 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=111.1
Q ss_pred eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE--Eec------CCCCceEEEEcCC---CcEEEEEecC
Q psy5806 1084 PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI--LVN------DLMEPLAIAVYPR---RGLLFYSHWG 1151 (1332)
Q Consensus 1084 ~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~--~~~------~~~~P~~iavdp~---~g~Lywtd~~ 1151 (1332)
+..++..|.+||+++. ++||+++...++|.+++.+ |....+ +.. +...+.+||++|. +++||++...
T Consensus 22 ~a~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 22 ILSNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp EECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred EECCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 3467889999999975 5699999877788888764 654433 222 2345669999997 9999999864
Q ss_pred CCC---CC---CCCcEEEEecCCC-----ceEEEEe----cCCCCcceEEEecCCCEEEEEEcC----------------
Q psy5806 1152 LYD---NS---PTTKIEKVYLDGS-----YRTVLVE----EDLAFPNELAIDFKQRRLFWADST---------------- 1200 (1332)
Q Consensus 1152 ~~~---~~---~~~~I~r~~ldG~-----~~~~l~~----~~l~~p~glaiD~~~~~LY~~d~~---------------- 1200 (1332)
... +. ...+|.|..+++. ..++|+. .....+.+|++++++ +||++...
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd~~~~~~~~~~~~~~~~ 179 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGDQGRNQLAYLFLPNQAQ 179 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECCTTTTSGGGTTSCCCTT
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECCCCCCCccccccccccc
Confidence 100 00 1358999998653 2344443 234668999999865 79998432
Q ss_pred ----------------CCeEEEEecCCC-----------ceEEEEe-ecccceEEEecCCccccccEEEEEECCCC
Q psy5806 1201 ----------------NKRIEYCDFFGR-----------SRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAM 1248 (1332)
Q Consensus 1201 ----------------~~~I~~~d~dG~-----------~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~ 1248 (1332)
.++|.|++.||+ ..++... ..+|+||++ ++ .+.||+++...+
T Consensus 180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~-----dp-~G~L~~~d~g~~ 249 (454)
T 1cru_A 180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAF-----TP-NGKLLQSEQGPN 249 (454)
T ss_dssp CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEE-----CT-TSCEEEEEECSS
T ss_pred cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEE-----CC-CCCEEEEecCCC
Confidence 478999999998 3455555 889999999 33 688999997544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.7e-06 Score=96.79 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=133.1
Q ss_pred CccceEEEEEeCCCcEEEEEeCCC------CeEEEEECCCCCCceeEeecCCCCceeeE----EEecCCeEEEEcC----
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRS------GNLRTFDMSDSTRIKPIPLMNDTIRDNFV----IDWVANNIYYIDS---- 1108 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~------~~I~~~~l~~g~~~~~i~~~~~~~p~glA----vDw~~~~LY~td~---- 1108 (1332)
+...|..+...+.+ ||++...+ +.|..++..++.-...+ .....|.+++ +.+..+.+|.++.
T Consensus 136 g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~--~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~ 211 (462)
T 2ece_A 136 GYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKW--EIDRGDQYLAYDFWWNLPNEVLVSSEWAVPN 211 (462)
T ss_dssp CEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEEC--CSBCTTCCCCCCEEEETTTTEEEECBCCCHH
T ss_pred CCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE--ccCCCCccccceEEECCCCCEEEEccCcCcc
Confidence 44467888888776 99987665 67998885532222111 1122455555 4556777877762
Q ss_pred --------------CCceEEEEeeCCc-eEEEEecC--CCCceEEEE--cCCCcEEEEEec-----CCCCCCCCCcEEEE
Q psy5806 1109 --------------QMHTINVARSDGQ-HKKILVND--LMEPLAIAV--YPRRGLLFYSHW-----GLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1109 --------------~~~~I~v~~ldG~-~~~~~~~~--~~~P~~iav--dp~~g~Lywtd~-----~~~~~~~~~~I~r~ 1164 (1332)
..++|.+++++.. ....+..+ -..|+.|++ +|...++|++.. .. +.|...
T Consensus 212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls------s~V~v~ 285 (462)
T 2ece_A 212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS------SSIWLW 285 (462)
T ss_dssp HHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC------EEEEEE
T ss_pred ccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC------ceEEEE
Confidence 3689999999853 23334332 146898877 998889999986 44 567776
Q ss_pred ecCCCceEE---E-Eec-----C-----------CCCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEe---e
Q psy5806 1165 YLDGSYRTV---L-VEE-----D-----------LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVIS---K 1220 (1332)
Q Consensus 1165 ~ldG~~~~~---l-~~~-----~-----------l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~---~ 1220 (1332)
..++..-.. | +.+ . -..|.+|.|+++++.||+++...+.|..+|.+ ..+.+.+.. +
T Consensus 286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 665532111 1 111 0 14689999999999999999999999999985 444444433 2
Q ss_pred -c--------------ccceEEEecCCccccccEEEEEE--------C-----CCCEEEEEEec
Q psy5806 1221 -V--------------APYGLSVRQSPGKAFIVELYWTD--------W-----EAMSVVIAREK 1256 (1332)
Q Consensus 1221 -~--------------~P~glav~~~~~~~~~~~lYwtd--------~-----~~~~V~~~~~~ 1256 (1332)
. .|.+|++ +.++.+||+|+ . .+..+++++..
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~l-----SpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd 424 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEI-----SRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNAN 424 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEE-----CTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEE-----cCCCCEEEEEcCCcccccccccCCCCceEEEEEEec
Confidence 1 5999999 66789999999 4 56677766443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-06 Score=88.32 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=109.8
Q ss_pred CceeeEEEecCCeEEEEcCC--CceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQ--MHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~--~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l 1166 (1332)
...||++| ++.||.+... .+.|.+++++ |+....+.- ...+.+..+.+.+++||...|.+ +++...+.
T Consensus 22 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~------~~v~v~D~ 92 (243)
T 3mbr_X 22 FTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEV-PPPYFGAGIVAWRDRLIQLTWRN------HEGFVYDL 92 (243)
T ss_dssp CEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSS------SEEEEEET
T ss_pred ccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeC-CCCcceeEEEEeCCEEEEEEeeC------CEEEEEEC
Confidence 45799999 6899999665 4689999997 554443321 13444443333468999999987 88999998
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-e------cccceEEEecCCccccccE
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-K------VAPYGLSVRQSPGKAFIVE 1239 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~------~~P~glav~~~~~~~~~~~ 1239 (1332)
+......-+... .. |..+..++++||.+| ++++|..+|........-+. . ..+..|.. .+++
T Consensus 93 ~tl~~~~ti~~~-~~--Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-------~~G~ 161 (243)
T 3mbr_X 93 ATLTPRARFRYP-GE--GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-------VNGE 161 (243)
T ss_dssp TTTEEEEEEECS-SC--CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-------ETTE
T ss_pred CcCcEEEEEeCC-CC--ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-------eCCE
Confidence 665544444433 33 444556689999999 58899999987544322222 2 33445666 7899
Q ss_pred EEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1240 LYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1240 lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
||...|.++.|.++|..+| +....+.
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~id 187 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWID 187 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEE
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEE
Confidence 9999999999999999999 6655554
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-08 Score=84.76 Aligned_cols=43 Identities=28% Similarity=0.590 Sum_probs=38.8
Q ss_pred ccccCC--CCcceeeeccCCC-ceEEeCCCCceecCCCCCcCCCcc
Q psy5806 392 YQSHCA--PKVCSHICLPNKH-RFTCQCPLGLTLSPDNKSCSESPE 434 (1332)
Q Consensus 392 ~~n~C~--~g~CshlCl~~~~-~~~C~C~~G~~L~~d~~tC~~~~~ 434 (1332)
+.|+|. ||+|+|+|++.++ +|+|+|+.||.|.+|+++|.+..+
T Consensus 4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~de 49 (69)
T 1kli_L 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 49 (69)
T ss_dssp CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSS
T ss_pred ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccc
Confidence 569998 8999999999998 899999999999999999976543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00032 Score=94.24 Aligned_cols=182 Identities=15% Similarity=0.079 Sum_probs=123.3
Q ss_pred ceEEEEEe-CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC-CceeeEEEecCCeEEEEcCCCceEE-EEeeCCce
Q psy5806 1046 SSIFFDYH-YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT-IRDNFVIDWVANNIYYIDSQMHTIN-VARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d-~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~-~p~glAvDw~~~~LY~td~~~~~I~-v~~ldG~~ 1122 (1332)
.+..++|+ +.+++|.++. .+.|+.+++..+. ... +..... .+..+++. .++.|+++.. ...|. +.++++..
T Consensus 297 ~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTY-VLK-VPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE--TTEEEEECTTSSB-EEE-CSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCC
T ss_pred ccceeeecCCCCCEEEEEE--cCEEEEEcCCCCc-eEE-ccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCC
Confidence 35688999 9998888876 6788888866332 222 212222 44556666 5667777655 56777 88888765
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
...+......+..++++|...+|+++... ..|+..++.+.....+..........++++++++.|.++....
T Consensus 371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~~-------~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVDRNGKFAVVANDR-------FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred ceEecCCccceeeeEECCCCCEEEEECCC-------CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcc
Confidence 55544444678899999987788777543 4799999987776666644444457899999999998875432
Q ss_pred --------CeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC
Q psy5806 1202 --------KRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1202 --------~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
+.|...|+++.....+.. ...+.++++ ++++.+|||+..
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~-----spdG~~l~~~s~ 491 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF-----DADSKNLYYLSY 491 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEE-----CTTSCEEEEEES
T ss_pred ccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceE-----cCCCCEEEEEec
Confidence 579999998755333333 445566777 456778888875
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-08 Score=84.50 Aligned_cols=42 Identities=33% Similarity=0.691 Sum_probs=39.4
Q ss_pred CCcccCCCCCCccccccCCC-CccccCCCCeeEccCCcccccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~-~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
.|+|+.+||||+|+|+++++ +|+|.|+.||.|..|+++|...
T Consensus 5 ~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~ 47 (69)
T 1kli_L 5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47 (69)
T ss_dssp CCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred cccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCc
Confidence 68999999999999999999 6999999999999999999853
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.45 E-value=5.5e-06 Score=99.88 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=123.9
Q ss_pred cceEEEEEeCC---CcEEEEEeCC--C----------CeEEEEECCCCC-------CceeEee----cCCCCceeeEEEe
Q psy5806 1045 MSSIFFDYHYS---KNLIYFADMR--S----------GNLRTFDMSDST-------RIKPIPL----MNDTIRDNFVIDW 1098 (1332)
Q Consensus 1045 ~~~~~id~d~~---~~~lY~sd~~--~----------~~I~~~~l~~g~-------~~~~i~~----~~~~~p~glAvDw 1098 (1332)
..+.+|++++. +++||++-.. . .+|.|+.+..+. ..++++. ........|++++
T Consensus 69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp 148 (463)
T 2wg3_C 69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP 148 (463)
T ss_dssp CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence 45789999986 7889987532 1 378888876421 1233332 1233566799997
Q ss_pred cCCeEEEEcCC-----------------CceEEEEeeCCc--------------------eEEEEecCCCCceEEEEcCC
Q psy5806 1099 VANNIYYIDSQ-----------------MHTINVARSDGQ--------------------HKKILVNDLMEPLAIAVYPR 1141 (1332)
Q Consensus 1099 ~~~~LY~td~~-----------------~~~I~v~~ldG~--------------------~~~~~~~~~~~P~~iavdp~ 1141 (1332)
.++||++-.. .++|.+++.||. ..++.+.++.+|.+|++||.
T Consensus 149 -DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 149 -DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp -TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred -CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 5699998322 356888999984 23455668999999999997
Q ss_pred Cc------EEEEEecCCCCCCCCCcEEEEecCCCce---EEEEecC-C--CCcceEEEecC------CCEEEEEEcCCCe
Q psy5806 1142 RG------LLFYSHWGLYDNSPTTKIEKVYLDGSYR---TVLVEED-L--AFPNELAIDFK------QRRLFWADSTNKR 1203 (1332)
Q Consensus 1142 ~g------~Lywtd~~~~~~~~~~~I~r~~ldG~~~---~~l~~~~-l--~~p~glaiD~~------~~~LY~~d~~~~~ 1203 (1332)
.| +||.+|.... +.....|.++.. |.+. ..++.-. - ..|.|+++-.. .+.+++++.. ++
T Consensus 228 tg~~~G~l~~~~~D~~G~-~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~ 304 (463)
T 2wg3_C 228 PTDININLTILCSDSNGK-NRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GN 304 (463)
T ss_dssp CSSTTCSEEEEEECC-------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SC
T ss_pred CCCcccceEEEecccCCC-CCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-Cc
Confidence 54 7888885220 112345665532 2211 1121111 1 35788888432 3458889876 88
Q ss_pred EEEEecCCCc---e-EEEE--------e--ecccceEEEecCCccccccEEEEEEC-------CCCEEEEEE
Q psy5806 1204 IEYCDFFGRS---R-KIVI--------S--KVAPYGLSVRQSPGKAFIVELYWTDW-------EAMSVVIAR 1254 (1332)
Q Consensus 1204 I~~~d~dG~~---~-~~~~--------~--~~~P~glav~~~~~~~~~~~lYwtd~-------~~~~V~~~~ 1254 (1332)
|.++.+++.. . +.+. . ..+|.++++ +.++.||++++ ..++|+|+.
T Consensus 305 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~------~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 305 FLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGE------DELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEE------CTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEE------CCCCCEEEEeccCCcccCCCCcEEEec
Confidence 9999886432 2 2221 1 357899999 56789999997 578899987
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-05 Score=90.44 Aligned_cols=152 Identities=10% Similarity=-0.045 Sum_probs=101.4
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEEEecC-----
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKILVND----- 1129 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~~~~~----- 1129 (1332)
++++|++....+.|+.+++.++.....+.......|.++++++.++.||++....+.|.+++++. +....+...
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 46788888888999999977543333332222226899999998889999998888999999974 433334322
Q ss_pred -CCCceEEEEcCCCcEEEEEecC----CC-CCCCCCcEEEEecCCCc---eEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1130 -LMEPLAIAVYPRRGLLFYSHWG----LY-DNSPTTKIEKVYLDGSY---RTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1130 -~~~P~~iavdp~~g~Lywtd~~----~~-~~~~~~~I~r~~ldG~~---~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...|.+++++|...+||++... .. .....+.|...++.... ...... .-..+.+++++++++ ||++.
T Consensus 90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~-- 165 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG-- 165 (349)
T ss_dssp EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--
T ss_pred ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--
Confidence 1238999999988899999843 00 00012578988886522 112222 224578899998887 88853
Q ss_pred CCeEEEEecCCC
Q psy5806 1201 NKRIEYCDFFGR 1212 (1332)
Q Consensus 1201 ~~~I~~~d~dG~ 1212 (1332)
+.|..+|....
T Consensus 166 -~~i~~~d~~~~ 176 (349)
T 1jmx_B 166 -PDIYKMDVKTG 176 (349)
T ss_dssp -SSEEEECTTTC
T ss_pred -CcEEEEeCCCC
Confidence 34888888543
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-07 Score=76.56 Aligned_cols=39 Identities=36% Similarity=0.983 Sum_probs=36.3
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
|+.+||+|+|+|++++++|+|.|+.||.|..|+++|.+.
T Consensus 1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~di 39 (51)
T 1kig_L 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEEC
T ss_pred CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccC
Confidence 677899999999999999999999999999999999854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.0001 Score=88.07 Aligned_cols=220 Identities=8% Similarity=0.040 Sum_probs=149.2
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN 1101 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~ 1101 (1332)
|+..+++.... ..+. .....+..++|++.+++|+++.... ..|+..++.++.. ..+. ...+.+..+++.+.++
T Consensus 161 i~i~d~~g~~~-~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~-~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 161 LRVSDYDGYNQ-FVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVA-SFPRHNGAPAFSPDGS 235 (415)
T ss_dssp EEEEETTSCSC-EEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEE-CCSSCEEEEEECTTSS
T ss_pred EEEEcCCCCCC-EEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-EEee-cCCCcccCEEEcCCCC
Confidence 77777763221 1111 1223467899999999999987544 5899999874432 2332 3344678899998899
Q ss_pred eEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC
Q psy5806 1102 NIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL 1179 (1332)
Q Consensus 1102 ~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l 1179 (1332)
.|+++... ...|.++++++.....+.........++.+|...+|+++.... ...+|++.++++.....+.. .-
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----g~~~i~~~d~~~~~~~~l~~-~~ 310 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRITW-EG 310 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCCEECCC-SS
T ss_pred EEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCC----CCcEEEEEECCCCCEEEEec-CC
Confidence 89877543 4468888987554444444445678899999777788776422 24689999998876554433 22
Q ss_pred CCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCC--EEEEEEe
Q psy5806 1180 AFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIARE 1255 (1332)
Q Consensus 1180 ~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~ 1255 (1332)
.....++++++++.|+++... ...|...|+++...+.+.......++++ .+.+.+|+++....+ .|+.++.
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~-----spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL-----APNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE-----CTTSSEEEEEEEETTEEEEEEEET
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEE-----cCCCCEEEEEEcCCCccEEEEEEC
Confidence 445678999999999998765 4589999998766544433335677777 445677888776555 7899987
Q ss_pred cCC
Q psy5806 1256 KSD 1258 (1332)
Q Consensus 1256 ~~g 1258 (1332)
.++
T Consensus 386 ~g~ 388 (415)
T 2hqs_A 386 DGR 388 (415)
T ss_dssp TSC
T ss_pred CCC
Confidence 644
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.9e-05 Score=86.97 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=108.2
Q ss_pred CceeeEEEec-------CCeEEEEcCCCceEEEEeeC-CceEEEEec-------------C-----CCCceEEEEcCC--
Q psy5806 1090 IRDNFVIDWV-------ANNIYYIDSQMHTINVARSD-GQHKKILVN-------------D-----LMEPLAIAVYPR-- 1141 (1332)
Q Consensus 1090 ~p~glAvDw~-------~~~LY~td~~~~~I~v~~ld-G~~~~~~~~-------------~-----~~~P~~iavdp~-- 1141 (1332)
....|+||-. .+.+|+||.....|.|.++. |+..+++.. + .....+||++|.
T Consensus 153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~ 232 (381)
T 3q6k_A 153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS 232 (381)
T ss_dssp GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence 4678999932 57899999999999999997 555554421 1 135678999997
Q ss_pred --CcEEEEEecCCCCCCCCCcEEEEec----C---CCceEEEEecC-CCCcceEEEecCCCEEEEEEcCCCeEEEEecCC
Q psy5806 1142 --RGLLFYSHWGLYDNSPTTKIEKVYL----D---GSYRTVLVEED-LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1142 --~g~Lywtd~~~~~~~~~~~I~r~~l----d---G~~~~~l~~~~-l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
.+.|||.-..+ .+++++.. + ....+.+...+ .....++++|..++.||+++...+.|.+.+.++
T Consensus 233 ~~~~~LYf~plss------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 233 EGNRPAYYLAGSA------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TSCCEEEEEESSC------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCeEEEEEECCC------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 78999998665 67888873 2 22333444432 234457889878899999999999999999988
Q ss_pred -----CceEEEEe---ecccceEEEecCCccccccEEEEEECC
Q psy5806 1212 -----RSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1212 -----~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
.+..+++. +..|.+|++ +.+++||++...
T Consensus 307 ~~~~~~n~~~l~~d~~l~~pd~~~i------~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 307 MPLRMKNTDVVYTSSRFVFGTDISV------DSKGGLWFMSNG 343 (381)
T ss_dssp CSBCGGGEEEEEECTTCCSEEEEEE------CTTSCEEEEECS
T ss_pred CccccCceEEEEECCCccccCeEEE------CCCCeEEEEECc
Confidence 35566665 889999999 558899998854
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-07 Score=79.05 Aligned_cols=38 Identities=29% Similarity=0.850 Sum_probs=35.7
Q ss_pred ccCCCCCCccccccCC-CCccccCCCCeeEccCCccccc
Q psy5806 972 CGSNNGGCSHLCLRNP-TNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p-~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
|+.+||+|+|+|++++ ++|+|.|+.||.|..|+++|.+
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 40 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence 7888999999999999 5899999999999999999985
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.6e-05 Score=86.63 Aligned_cols=193 Identities=11% Similarity=0.021 Sum_probs=132.6
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecC-CCCceE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLA 1135 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~-~~~P~~ 1135 (1332)
+.+++++...+.|+.++..+|.....+-......+.++++++. ++||++. .+.|..++.+|+..-.+... ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs~--~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA-GEILFSY--SKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT-SCEEEEC--BSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC-CCEEEeC--CCCEEEECCCCCEEEEEcCCCCccccc
Confidence 4566666667777777754444333333222235888999864 5666643 56788899888865554432 135677
Q ss_pred EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-cC----CCCcceEEEecCCCEEEEEEcCCCeEEEEecC
Q psy5806 1136 IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-ED----LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210 (1332)
Q Consensus 1136 iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-~~----l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d 1210 (1332)
+++.| +|.+++++.+. ..+|+.++.+|+....+-. .. ...|.+++++.+ +.+++++...++|..+|.+
T Consensus 82 ~~~~~-dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 82 ARILP-DGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEECT-TSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTT
T ss_pred cEECC-CCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC-CCEEEEecCCCEEEEECCC
Confidence 88888 78888888762 2689999999986555431 11 235677888865 4566788899999999999
Q ss_pred CCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1211 GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1211 G~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
|+....+-....|+++++ ..++.+++++...++|+.+++.+| +.+..+.
T Consensus 155 G~~~w~~~~~~~~~~~~~------~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~ 203 (276)
T 3no2_A 155 GQLLNSVKLSGTPFSSAF------LDNGDCLVACGDAHCFVQLNLESN---RIVRRVN 203 (276)
T ss_dssp SCEEEEEECSSCCCEEEE------CTTSCEEEECBTTSEEEEECTTTC---CEEEEEE
T ss_pred CCEEEEEECCCCccceeE------cCCCCEEEEeCCCCeEEEEeCcCC---cEEEEec
Confidence 765444333567888888 357889999999999999999988 5555554
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=77.33 Aligned_cols=39 Identities=36% Similarity=0.778 Sum_probs=36.1
Q ss_pred ccCCCCCCccccccCCC-CccccCCCCeeEccCCcccccc
Q psy5806 972 CGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~-~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
|+.+||+|+|+|+++++ +|+|.|+.||.|..|+++|.+.
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~ 41 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCC
Confidence 78889999999999999 5999999999999999999854
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-07 Score=77.35 Aligned_cols=41 Identities=24% Similarity=0.675 Sum_probs=37.0
Q ss_pred ccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcCCCcc
Q psy5806 394 SHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434 (1332)
Q Consensus 394 n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~~~ 434 (1332)
|+|+ +++|+|+|++.+++|+|.|+.||+|..|+++|.+..+
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~dide 44 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 44 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcc
Confidence 6887 6889999999999999999999999999999976543
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-07 Score=94.65 Aligned_cols=40 Identities=30% Similarity=0.734 Sum_probs=35.2
Q ss_pred CCCCCCCCEEec--CCCEEEeeeecCCCCCCCCCCCcc--cccc
Q psy5806 56 PKKCSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDER--NCNK 95 (1332)
Q Consensus 56 ~~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~--~C~~ 95 (1332)
...|.+.+|+|. +|.||+..|+|||..||+|||||. +|..
T Consensus 50 ~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~ 93 (220)
T 2gtl_N 50 GTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93 (220)
T ss_dssp CCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCG
T ss_pred CCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCC
Confidence 356888999995 689999999999999999999995 7864
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-07 Score=95.96 Aligned_cols=40 Identities=35% Similarity=0.805 Sum_probs=35.6
Q ss_pred CCCCCCCCEEecC--CCEEEeeeecCCCCCCCCCCCcc--cccc
Q psy5806 56 PKKCSPDEHRCTT--GHCILKTWLCDGIPDCSLGEDER--NCNK 95 (1332)
Q Consensus 56 ~~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~--~C~~ 95 (1332)
...|++.+|+|.+ |.||+..|+|||..||+|||||. +|..
T Consensus 51 ~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 51 EHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp CCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence 4579999999965 99999999999999999999997 6754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.022 Score=70.29 Aligned_cols=209 Identities=9% Similarity=0.049 Sum_probs=137.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+.+++|++.++.|.... ..+.|...+.+ +.....+. .....+.+|++++.++.|..+. ..+.|.+++.+++....
T Consensus 346 ~v~~~~~s~~g~~l~~~~-~dg~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~~~~~ 421 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASAS-DDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQT 421 (577)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETT-CCEEEEEE-CCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCCEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCCEEEEEcCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCEEEE
Confidence 356888998887776654 66778877754 43333332 2345678999998777776554 45689999998887666
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~ 1205 (1332)
+..-.....+|+++|...+|..+... ..|..-++++.....+.. .-.....+++.++++.|..+ ...+.|.
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d-------~~v~~w~~~~~~~~~~~~-~~~~v~~~~~spd~~~las~-~~d~~i~ 492 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDD-------KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASA-SDDKTVK 492 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTSCEEEEEEC-CSSCEEEEEECTTSCEEEEE-ETTSEEE
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCC-------CEEEEEECCCCEEEEEcC-CCCCEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 65444567899999976666555432 457777788766555443 23566789999887777655 4567888
Q ss_pred EEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1206 YCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1206 ~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
..+.+|...+.+.. .....+|++ .+.+.+|..+ ...+.|...+. ++ .....+......+..+
T Consensus 493 iw~~~~~~~~~~~~h~~~v~~l~~-----s~dg~~l~s~-~~dg~v~lwd~-~~---~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 493 LWNRNGQLLQTLTGHSSSVRGVAF-----SPDGQTIASA-SDDKTVKLWNR-NG---QLLQTLTGHSSSVWGV 555 (577)
T ss_dssp EEETTSCEEEEEECCSSCEEEEEE-----CTTSSCEEEE-ETTSEEEEECT-TS---CEEEEEECCSSCEEEE
T ss_pred EEcCCCCEEEEEeCCCCCEEEEEE-----cCCCCEEEEE-ECcCEEEEEeC-CC---CEEEEEcCCCCCEEEE
Confidence 88988876555544 556678888 2334445444 46678888874 45 4455555444444444
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-07 Score=76.76 Aligned_cols=42 Identities=24% Similarity=0.793 Sum_probs=38.4
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
.++|+.+||+|+|+|++++++|+|.|+.||.|..|+++|...
T Consensus 1 ~dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~di 42 (55)
T 2jkh_L 1 RKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 42 (55)
T ss_dssp -CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred CccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccC
Confidence 368998899999999999999999999999999999999854
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.041 Score=75.05 Aligned_cols=151 Identities=6% Similarity=-0.071 Sum_probs=93.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.+++|++.++.|+.+. ..+.|+..++.++.....+. ...+.+..+++.+.++.|..+. ..+.|.++++. |+...
T Consensus 1087 ~v~~~~~s~d~~~l~s~s-~d~~v~iwd~~~~~~~~~l~-~h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1087 TVLSCAISSDATKFSSTS-ADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSDGQLLH 1163 (1249)
T ss_dssp CCCCEEECSSSSSCEEEC-CSSCCCEECSSSSSCSBCCC-CCSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSSSCCCC
T ss_pred cEEEEEECCCCCEEEEEc-CCCcEEEEECCCcceeeeec-cCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEE
Confidence 356888998877665554 67788888877554443332 2334578899998777776554 45678899987 44322
Q ss_pred EE---------ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEE
Q psy5806 1125 IL---------VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1125 ~~---------~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
.+ ......+.+++++|...+|+.++ + .|...++........+...-.....+++.++++.|+
T Consensus 1164 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g--------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~ 1234 (1249)
T 3sfz_A 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-G--------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1234 (1249)
T ss_dssp CCCCCC-------CCSCCCEEEECTTSSCEEEES-S--------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEE
T ss_pred EeccccccccccccCceEEEEEECCCCCEEEECC-C--------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEE
Confidence 11 12234578999999766676553 3 366666654443222222234456789998887777
Q ss_pred EEEcCCCeEEEEec
Q psy5806 1196 WADSTNKRIEYCDF 1209 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~ 1209 (1332)
.++ ..+.|...++
T Consensus 1235 ~~~-~dg~v~vw~l 1247 (1249)
T 3sfz_A 1235 TVD-NLGILYILQV 1247 (1249)
T ss_dssp EEC-TTCCEEEECC
T ss_pred Eec-CCcEEEEEee
Confidence 664 4566665543
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-07 Score=75.66 Aligned_cols=39 Identities=28% Similarity=0.687 Sum_probs=34.7
Q ss_pred CC--CCcceeeeccCCC-ceEEeCCCCceecCCCCCcCCCcc
Q psy5806 396 CA--PKVCSHICLPNKH-RFTCQCPLGLTLSPDNKSCSESPE 434 (1332)
Q Consensus 396 C~--~g~CshlCl~~~~-~~~C~C~~G~~L~~d~~tC~~~~~ 434 (1332)
|+ |++|+|+|++.++ +|+|+|+.||+|.+|+++|.+..+
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~de 43 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 43 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSS
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcc
Confidence 55 7899999999998 799999999999999999986543
|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-07 Score=110.85 Aligned_cols=79 Identities=22% Similarity=0.397 Sum_probs=57.0
Q ss_pred cccccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEec-CCCEEEeeeecCCCCCC
Q psy5806 9 WVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQA---SPPKKCSPDEHRCT-TGHCILKTWLCDGIPDC 84 (1332)
Q Consensus 9 ~~~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~---~~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC 84 (1332)
.|. .|...++|-+ .|....++.|..-.....|+..|... ..+..| .+|+|. ||+||+..|+|||+.||
T Consensus 21 ~C~--~C~~~~~R~R----~v~~p~q~gG~~C~~~l~d~~~C~~~~~C~~~~~c--~~f~C~~~g~Ci~~~~~Cdg~~dC 92 (537)
T 3ojy_B 21 TCD--PCQKKRYRYA----YLLQPSQFHGEPCNFSDKEVEDCVTNRPCRSQVRC--EGFVCAQTGRCVNRRLLCNGDNDC 92 (537)
T ss_dssp CCB--TTTTEEEEEC----CEEECEETTCCCCCSCSEEEEECCCCCCCCCCSCC--SSEECTTTCCEECGGGTTSSSCCS
T ss_pred CCC--CCCCceEeee----eeccccccCCCcCccchhhhccCCCccccccCCCC--CccCcCCCCcEeeccccCCCCCCC
Confidence 454 4666666655 57666666555444345777778311 112346 799999 99999999999999999
Q ss_pred CCCCCcccccc
Q psy5806 85 SLGEDERNCNK 95 (1332)
Q Consensus 85 ~DgsDE~~C~~ 95 (1332)
.|||||.+|+.
T Consensus 93 ~d~sdE~~c~~ 103 (537)
T 3ojy_B 93 GDQSDEANCRR 103 (537)
T ss_dssp SSSCTTSSCSS
T ss_pred CCccccccCCC
Confidence 99999999865
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.2e-05 Score=91.39 Aligned_cols=211 Identities=9% Similarity=0.064 Sum_probs=129.5
Q ss_pred CCccceEEEEEeCCCc-EEEEEeCCCCeEEEEECCCCCC-ceeE------eecC-----CCCceeeEEEec---CCeEEE
Q psy5806 1042 PEYMSSIFFDYHYSKN-LIYFADMRSGNLRTFDMSDSTR-IKPI------PLMN-----DTIRDNFVIDWV---ANNIYY 1105 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~-~lY~sd~~~~~I~~~~l~~g~~-~~~i------~~~~-----~~~p~glAvDw~---~~~LY~ 1105 (1332)
.++.+|.+|++.+.+. +||+++ ..|+|++++.+ +.. ...+ +..+ .+.+.|||+++. ++.||+
T Consensus 11 ~gL~~P~~~a~~pdG~~rl~V~e-r~G~i~~~~~~-g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 11 SGLRQPVGALHSGDGSQRLFILE-KEGYVKILTPE-GEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp EEESSEEEEECCSSSSCCEEEEE-TTTEEEEECTT-SCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred cCCCCceEEEECCCCCeEEEEEe-CCceEEEEeCC-CCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 3577899999999874 899998 56899998744 432 1111 1112 346789999974 688999
Q ss_pred EcCC------------CceEEEEeeCC--------ceEEEEe-----cCCCCceEEEEcCCCcEEEEEecCCCC------
Q psy5806 1106 IDSQ------------MHTINVARSDG--------QHKKILV-----NDLMEPLAIAVYPRRGLLFYSHWGLYD------ 1154 (1332)
Q Consensus 1106 td~~------------~~~I~v~~ldG--------~~~~~~~-----~~~~~P~~iavdp~~g~Lywtd~~~~~------ 1154 (1332)
+... ..+|.+++++. ...++|. ...-....|+++| .|+||++--....
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~ 167 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDME 167 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHH
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccc
Confidence 7532 13666666642 1122321 1223357799999 7899999522110
Q ss_pred -----CCCCCcEEEEecCCCc-------------------eEEEEecCCCCcceEEEecCCC------EEEEEEc-CC--
Q psy5806 1155 -----NSPTTKIEKVYLDGSY-------------------RTVLVEEDLAFPNELAIDFKQR------RLFWADS-TN-- 1201 (1332)
Q Consensus 1155 -----~~~~~~I~r~~ldG~~-------------------~~~l~~~~l~~p~glaiD~~~~------~LY~~d~-~~-- 1201 (1332)
....++|.|++.||+. +..|+..++..|.||++|+.++ +||.+|. +.
T Consensus 168 ~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~ 247 (463)
T 2wg3_C 168 EMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNR 247 (463)
T ss_dssp HCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC-----
T ss_pred cccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCC
Confidence 2235889999999951 2346777899999999999754 6787885 21
Q ss_pred --CeEEEEecCCCc---eEEEEe-----ecccceEEEe-cCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1202 --KRIEYCDFFGRS---RKIVIS-----KVAPYGLSVR-QSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1202 --~~I~~~d~dG~~---~~~~~~-----~~~P~glav~-~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
.+|..+. .|.+ ...++. ...|.|+++. |+---++.+.++++++. ++|.++....
T Consensus 248 ~~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~ 312 (463)
T 2wg3_C 248 SSARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSP 312 (463)
T ss_dssp -CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC--
T ss_pred CCCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCC
Confidence 2344432 2321 112222 2578999981 11111345568999997 7899887654
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-07 Score=76.50 Aligned_cols=39 Identities=31% Similarity=0.851 Sum_probs=35.9
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
|+.+||+|+|+|+..+.++|+|+|+.||+|.+|+++|.+
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 40 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence 778899999999999844999999999999999999985
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.5e-05 Score=87.07 Aligned_cols=198 Identities=13% Similarity=0.003 Sum_probs=133.6
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCC-CCce--eEe-------ecCCCCceeeEEEecCCeEEEEcCCC------ceEEEEe
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDS-TRIK--PIP-------LMNDTIRDNFVIDWVANNIYYIDSQM------HTINVAR 1117 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g-~~~~--~i~-------~~~~~~p~glAvDw~~~~LY~td~~~------~~I~v~~ 1117 (1332)
...++||+....+++|+.+++... ...+ .++ ..+...|.++..-+.+ ||++..+. +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 567899999999999999986421 1111 122 1244579999998655 99986655 6888888
Q ss_pred eCC-ceEEEEecC---CCCceEEEEcCCCcEEEEEecCC-------CC-C----CCCCcEEEEecCCCceEEEEecCC--
Q psy5806 1118 SDG-QHKKILVND---LMEPLAIAVYPRRGLLFYSHWGL-------YD-N----SPTTKIEKVYLDGSYRTVLVEEDL-- 1179 (1332)
Q Consensus 1118 ldG-~~~~~~~~~---~~~P~~iavdp~~g~Lywtd~~~-------~~-~----~~~~~I~r~~ldG~~~~~l~~~~l-- 1179 (1332)
.+. +....+..+ ...++.+.++|....||.++|+. +. . ....+|...+++.......+..+-
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 874 433333222 12356688899888999999861 00 0 014789999998643333333211
Q ss_pred CCcceEEE--ecCCCEEEEEEc-----CCCeEEEEecCCCce--EEEE--e------------------ecccceEEEec
Q psy5806 1180 AFPNELAI--DFKQRRLFWADS-----TNKRIEYCDFFGRSR--KIVI--S------------------KVAPYGLSVRQ 1230 (1332)
Q Consensus 1180 ~~p~glai--D~~~~~LY~~d~-----~~~~I~~~d~dG~~~--~~~~--~------------------~~~P~glav~~ 1230 (1332)
..|.+|.+ +++++.+|++.. -++.|..+.+++... ..++ . ...|.+|.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l-- 328 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI-- 328 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE--
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE--
Confidence 25777766 889999999998 888999888875321 1111 1 134778888
Q ss_pred CCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1231 SPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1231 ~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.++.+||+++|..+.|..++....
T Consensus 329 ---S~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 329 ---SLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp ---CTTSCEEEEEETTTTEEEEEECSST
T ss_pred ---CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 6678999999999999999997533
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.031 Score=69.31 Aligned_cols=190 Identities=9% Similarity=-0.085 Sum_probs=116.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK- 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~- 1124 (1332)
.+..+++.+.+..+ .+. ..+.|...++.++.....+. ....+..+++. ++.|+.+....+.|.++++......
T Consensus 408 ~~~~~~~s~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~ 481 (615)
T 1pgu_A 408 QPKVASANNDGFTA-VLT-NDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF 481 (615)
T ss_dssp CEEEEEECSSSEEE-EEE-TTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred CceEEEEcCCCCEE-EEe-CCCceEEEeccCCceeeecc--cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc
Confidence 46788888876544 443 66778888875444333332 34568889988 7777666543678999999865442
Q ss_pred E-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-CCCCcceEEEec----------CCC
Q psy5806 1125 I-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-DLAFPNELAIDF----------KQR 1192 (1332)
Q Consensus 1125 ~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-~l~~p~glaiD~----------~~~ 1192 (1332)
. +......+..++++|...+|...... +.|...++........+.. .-.....+++.+ +++
T Consensus 482 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 482 DLKTPLRAKPSYISISPSETYIAAGDVM-------GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp ECSSCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred cccCCccCceEEEEECCCCCEEEEcCCC-------CeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 2 33334568899999966666555432 4677778755443332222 335577889988 666
Q ss_pred EEEEEEcCCCeEEEEecCCC-ceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1193 RLFWADSTNKRIEYCDFFGR-SRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d~dG~-~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
.|..+ ...+.|...+++.. ....... .....+|++ ..++. .++-...+.|...+..
T Consensus 555 ~l~~~-~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~------s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 555 LVATG-SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW------ETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEE-ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEE------EETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEE-cCCCcEEEEECCCCceechhhhcCccceEEEEE------cCCCC-eEEecCCceEEEEeee
Confidence 66655 46678999999754 2222222 445567777 12333 4444456666666543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00093 Score=85.94 Aligned_cols=360 Identities=11% Similarity=0.048 Sum_probs=195.4
Q ss_pred CccceeEecCCCeEEEEeCCCC-----eEEEEeCCCCceEEEEecCCC------------------------CCeEEEEe
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQ-----TIMVSDIDGKNAKVLFWLNLY------------------------RPRSIVVH 833 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~-----~I~v~~ldG~~~~~l~~~~~~------------------------~P~~Iavd 833 (1332)
.+..+++.+.++.|+.+....+ .|.+.++++.....++..... ...++++.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4667888888888888766333 788888866544444322111 14678999
Q ss_pred CCCCeEEEEecccCcCCCCceEEEecCCC---CcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEE
Q psy5806 834 YGLGLMVWADWSRTRLTNNRIEMAHMDGT---NRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRA 910 (1332)
Q Consensus 834 p~~g~lywtd~g~~~~~~~~I~r~~~dG~---~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l 910 (1332)
|...+|+++.. .+|...++++. ....+...-..+..+++.+++ ++|+++.. +.|...++++.....+
T Consensus 118 pDg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~~--~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 118 PDAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIRG--RNLWVIDLASGRQMQL 187 (741)
T ss_dssp TTSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEET--TEEEEEETTTTEEEEC
T ss_pred CCCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEeC--CcEEEEecCCCCEEEe
Confidence 98777777653 36888888876 444443333456688888988 88888764 4788888877554443
Q ss_pred eccCCc-----------------ceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCc
Q psy5806 911 YAVQSH-----------------PYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNA 971 (1332)
Q Consensus 911 ~~~~~~-----------------P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~ 971 (1332)
...... +.++++. +.+|+++......+ . .+....... .+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~-------------------~-~~~~~~~~p--~~ 245 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPV-------------------P-VQKRYEVYA--DR 245 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTS-------------------C-EEEEEEECS--SC
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCC-------------------c-eEecCCCCC--Cc
Confidence 221111 1222222 22333321111000 0 000000000 00
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCC-CCCCCcccccCCccceEEE
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDT-ADLLPVTLPFPEYMSSIFF 1050 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~-~~~~~~~~pi~~~~~~~~i 1050 (1332)
-. -..+ .....+. ..+ ... |+.++++. ........+-.....+..+
T Consensus 246 ~~-----~~~~----------------~~~~~g~---~~~--------~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 292 (741)
T 2ecf_A 246 TD-----VIEQ----------------RYPAAGD---ANV--------QVK-LGVISPAEQAQTQWIDLGKEQDIYLARV 292 (741)
T ss_dssp EE-----EEEE----------------ECCBTTS---CCC--------EEE-EEEECSSTTCCCEEECCCSCSSEEEEEE
T ss_pred cc-----ceEe----------------ecCCCCC---CCC--------eeE-EEEEECCCCCceEEecCCCCcceEEEEE
Confidence 00 0000 0000000 000 012 44444443 2211111110122346788
Q ss_pred EEeCCCcEEEEEeC----CCCeEEEEECCCCCCceeEeecCCC---CceeeEEEecCCeEEEEcCCCc--eEEEEeeCCc
Q psy5806 1051 DYHYSKNLIYFADM----RSGNLRTFDMSDSTRIKPIPLMNDT---IRDNFVIDWVANNIYYIDSQMH--TINVARSDGQ 1121 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~----~~~~I~~~~l~~g~~~~~i~~~~~~---~p~glAvDw~~~~LY~td~~~~--~I~v~~ldG~ 1121 (1332)
+| +.+++|+++.. ....|+.+++.++....++...... ....+++.+.++ ++++....+ +|..++++|.
T Consensus 293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC
T ss_pred Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC
Confidence 99 99999998754 2356888998755433332221111 335788887777 555544433 5666666677
Q ss_pred eEEEEecCCCCceEE-EEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1122 HKKILVNDLMEPLAI-AVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~i-avdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...+.........+ +++|...+||++.... +....+|++++++|...+.|.. ......+++++++++|.++-..
T Consensus 371 -~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~--~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDEKAGLAYFRAGIE--SARESQIYAVPLQGGQPQRLSK--APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp -EEESCCSSSCEEEEEEEETTTTEEEEEECSS--CTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSSEEEEEEEE
T ss_pred -eeeeeecceEEEeEeEEeCCCCEEEEEEeCC--CCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCCEEEEEecC
Confidence 54454443445566 5999888898886543 1124579999998876655543 2334578899999988877544
Q ss_pred C---CeEEEEecCCCce
Q psy5806 1201 N---KRIEYCDFFGRSR 1214 (1332)
Q Consensus 1201 ~---~~I~~~d~dG~~~ 1214 (1332)
. ..+...+.+|...
T Consensus 446 ~~~p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 446 NSTPPQIELFRANGEKI 462 (741)
T ss_dssp TTEEEEEEEEETTSCEE
T ss_pred CCCCCeEEEEEcCCCeE
Confidence 2 3577777776543
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-07 Score=108.58 Aligned_cols=79 Identities=20% Similarity=0.491 Sum_probs=59.0
Q ss_pred cccccCCCCCceecCCCCceEeCCcCcCCCCCCCCC-CCCCCCCCCC---CCCCCCCCCEEec-CCCEEEeeeecCCCCC
Q psy5806 9 WVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMG-EDEMKCPQAS---PPKKCSPDEHRCT-TGHCILKTWLCDGIPD 83 (1332)
Q Consensus 9 ~~~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dg-sDE~~C~~~~---~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~D 83 (1332)
.|. .|...++|.+ .|....++.|.. |.+. .|+..|.... .+..|. ++|+|. +|+||+..|+|||+.|
T Consensus 19 ~C~--~C~~~~~R~R----~v~~p~q~gG~~-C~~~l~d~~~C~~~~~c~~~~~c~-~~f~C~~~g~Ci~~~~~Cdg~~d 90 (554)
T 3ojy_A 19 DCF--PCQDKKYRHR----SLLQPNKFGGTI-CSGDIWDQASCSSSTTCVRQAQCG-QDFQCKETGRCLKRHLVCNGDQD 90 (554)
T ss_dssp CCC--TTTCEEEEEC----CEEECBCSSCCC-CCSCSEEEEECCCCCCC--CCCCS-SSEECSSSCCEECGGGTTSSSCC
T ss_pred CCC--CCCCccEeeE----eeccccccCCCC-CCCccccccCCCCCCCCcccCCCC-CcCccCCCCEEcccccccCCccc
Confidence 454 4766676665 677777777655 7764 6777784211 124564 799999 9999999999999999
Q ss_pred CCCCCCcccccc
Q psy5806 84 CSLGEDERNCNK 95 (1332)
Q Consensus 84 C~DgsDE~~C~~ 95 (1332)
|.|+|||.+|..
T Consensus 91 C~d~sDE~~C~~ 102 (554)
T 3ojy_A 91 CLDGSDEDDCED 102 (554)
T ss_dssp SSSCTTSSSCCS
T ss_pred CCCccccccCCC
Confidence 999999999864
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.4e-07 Score=71.88 Aligned_cols=38 Identities=34% Similarity=0.968 Sum_probs=35.4
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
|..+||+|+|+|+..++ +|+|.|+.||+|..|+++|.+
T Consensus 1 C~~~ng~C~~~C~n~~g-s~~C~C~~Gy~L~~d~~tC~d 38 (51)
T 1kig_L 1 CSLDNGGCDQFCREERS-EVRCSCAHGYVLGDDSKSCVS 38 (51)
T ss_dssp CCTTTTSSSSCCCEETT-EECCCCCTTEEECTTSSCEEE
T ss_pred CCCCCCCcCCEeEcCCC-CeEEeCCCCcEECCCCCcccc
Confidence 66789999999999987 999999999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.044 Score=67.97 Aligned_cols=541 Identities=9% Similarity=-0.028 Sum_probs=256.1
Q ss_pred ccceEEEEEEccCCeEEEEcCCCceEEEEEecCc----ceEEEEeCCCCC-CccEEEec--cCCeEEEEeCCCCeEEEEe
Q psy5806 466 VKSVVAIAWESANDSLYWADVENGEINRAHINGT----FQYNVIRHNTKK-PAGVAIDW--RTNKLYWTESEYNWIEVSN 538 (1332)
Q Consensus 466 ~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~----~~~~v~~~~~~~-p~glAvDw--~~~~lYw~d~~~~~I~v~~ 538 (1332)
...+.+++|++..+.|.... .+.|.-.++... .....+...... +..+++.. .++.|+ +-...+.|.+-+
T Consensus 18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~-s~~~dg~v~vw~ 94 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC-SGDESGKVIVWG 94 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEE-EEETTSEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEE-EecCCCEEEEEe
Confidence 34567899999888787775 567777777643 333444433445 67888887 555554 444567888888
Q ss_pred CC-C------CCc-EEEEeCCCCCceEEEEecCCCeEEEEecCCC--CceEEEcCCCCceEEEEeCCCCCceeeEEeccC
Q psy5806 539 LD-G------TYP-TLLFWQNLSEPRDIAVNPIGGIMYWCSWGDL--HKIEMAGMDGSHRHILASDSLKNPTGLAIDLEN 608 (1332)
Q Consensus 539 l~-g------~~~-~~l~~~~~~~P~~iavdp~~G~lywtd~g~~--~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~ 608 (1332)
+. | ... ...+........++++.|...+|+-...... ..|.... .+.. ...+...-.....+++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~-~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNS-LGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCE-EEECCSCSSCEEEEEECSSS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCc-ceeeecCCccEEEEEECCCC
Confidence 74 2 111 1112233456789999998777766553211 2343333 2222 22222333455677777766
Q ss_pred CeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceee
Q psy5806 609 SRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCV 688 (1332)
Q Consensus 609 ~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~ 688 (1332)
..++.+-...+.|...++.... .+. .+... .+ ....-.|.
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~--~~~------------------~~~~~-----------~~---------~~~~v~~~ 212 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFK--FSA------------------SDRTH-----------HK---------QGSFVRDV 212 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBE--EEE------------------EECSS-----------SC---------TTCCEEEE
T ss_pred CcEEEEEeCCCcEEEEeCCCcc--eee------------------eeccc-----------CC---------CCceEEEE
Confidence 6344443444555554433211 110 00000 00 00000110
Q ss_pred CCCCccccCCCCccccCCccceEe-eccceeEEEecCCCCCcceeeec-----ccccceeEEeecCCCceEEEEecCCCc
Q psy5806 689 CPAGNLLREDRRTCSENPSKFLLV-SQTDKIRQISLDVEYRYPIVLPL-----RQLKMVASVDVDTKNEYIYWSDISEKT 762 (1332)
Q Consensus 689 Cp~g~~l~~d~~tC~~~~~~~ll~-s~~~~i~~i~l~~~~~~~~~~~~-----~~~~~~~~id~d~~~~~lYwsD~~~~~ 762 (1332)
.+.++ ...+|+. +....|+..++.... ....+ .....+.++++. ++..+++-...+.
T Consensus 213 -----~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 213 -----EFSPD-------SGEFVITVGSDRKISCFDGKSGE---FLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT 275 (615)
T ss_dssp -----EECST-------TCCEEEEEETTCCEEEEETTTCC---EEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred -----EECCC-------CCCEEEEEeCCCeEEEEECCCCC---EeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence 11111 0122222 233455555554322 11222 223456778887 4555555555677
Q ss_pred eEEEecCCCCceEEEeCC----CCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCe
Q psy5806 763 IERVRFDMTGRERLVVND----LNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGL 838 (1332)
Q Consensus 763 I~r~~~~g~~~~~vi~~~----~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~ 838 (1332)
|...++........+... -..+..+++. .++..++-...+.|.+.++........+........++++ |.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--- 349 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--- 349 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---
Confidence 877776533322222221 1223334443 3334445455667888877642222222222244666777 55
Q ss_pred EEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcc
Q psy5806 839 MVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHP 917 (1332)
Q Consensus 839 lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P 917 (1332)
|+.... . ..|....+. .+... ......+++ ..+ +.|+.+ ...+.|...++.... ....|
T Consensus 350 l~~~~~--d----g~i~~w~~~-----~~~~~~~~~v~~~~~-~~~-~~l~~~-~~d~~i~~~~~~~~~------~~~~~ 409 (615)
T 1pgu_A 350 LISGSY--D----GRIMEWSSS-----SMHQDHSNLIVSLDN-SKA-QEYSSI-SWDDTLKVNGITKHE------FGSQP 409 (615)
T ss_dssp TEEEET--T----SCEEETTTT-----EEECCCCSCEEEEEC-CST-TCCEEE-ETTTEEEETTEEEEE------CSSCE
T ss_pred cEEECC--C----CeEEEEEch-----hhcCcccCceEEEEE-CCC-cEEEEE-eCCCCEEEEEcccCc------ccCCc
Confidence 332221 2 244444433 11111 223335555 223 334333 233444444432211 12255
Q ss_pred eEEEEeCC-EEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCC
Q psy5806 918 YTLTVLDY-YVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPT 996 (1332)
Q Consensus 918 ~~la~~~~-~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~ 996 (1332)
..+++..+ .+..+. ..+.+...+..+++.+.. +. .. .....+++.
T Consensus 410 ~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~----~~---------~~~~~~~~~----------- 455 (615)
T 1pgu_A 410 KVASANNDGFTAVLT-NDDDLLILQSFTGDIIKS---------VR----LN---------SPGSAVSLS----------- 455 (615)
T ss_dssp EEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEE---------EE----CS---------SCEEEEEEC-----------
T ss_pred eEEEEcCCCCEEEEe-CCCceEEEeccCCceeee---------cc----cC---------CCceEEEEc-----------
Confidence 56665532 333222 444444433333321110 00 00 000001000
Q ss_pred CeeEccCCccccccCcceEEEEee--cceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCCcEEEEEeCCCCeEEEEE
Q psy5806 997 GILLSADRRSCFSRTREFLLYTSR--FGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073 (1332)
Q Consensus 997 g~~l~~d~~tC~~~p~~~ll~~~~--~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~ 1073 (1332)
..+|+.... .. |+..++....... ..+. ....+..++|++.++.|.... ..+.|+..+
T Consensus 456 ---------------~~~l~~~~~~d~~-i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~ 516 (615)
T 1pgu_A 456 ---------------QNYVAVGLEEGNT-IQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYD 516 (615)
T ss_dssp ---------------SSEEEEEETTTSC-EEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEE
T ss_pred ---------------CCEEEEeecCCCe-EEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcC-CCCeEEEee
Confidence 123333332 23 4444443221100 1111 223467999999988777665 678899999
Q ss_pred CCCCCCceeEeecCCCCceeeEEEe----------cCCeEEEEcCCCceEEEEeeCCc--eEEEEecCCCCceEEEEcCC
Q psy5806 1074 MSDSTRIKPIPLMNDTIRDNFVIDW----------VANNIYYIDSQMHTINVARSDGQ--HKKILVNDLMEPLAIAVYPR 1141 (1332)
Q Consensus 1074 l~~g~~~~~i~~~~~~~p~glAvDw----------~~~~LY~td~~~~~I~v~~ldG~--~~~~~~~~~~~P~~iavdp~ 1141 (1332)
+.++.....+.......+..+++.+ .++.|..+ ...+.|.+++++.. ....+..-.....+|++.|.
T Consensus 517 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE-ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred CCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEE-cCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence 8754333222211345678899987 56666544 45668999999853 33334333456889999995
Q ss_pred CcEEEEEe
Q psy5806 1142 RGLLFYSH 1149 (1332)
Q Consensus 1142 ~g~Lywtd 1149 (1332)
.. |..+.
T Consensus 596 ~~-l~s~~ 602 (615)
T 1pgu_A 596 ST-LVSSG 602 (615)
T ss_dssp TE-EEEEE
T ss_pred CC-eEEec
Confidence 54 54443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00021 Score=79.50 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=133.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCC-CCCceeEeec-CCCCceeeEEEecCCeEEEEcCC---CceEEEEeeCC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSD-STRIKPIPLM-NDTIRDNFVIDWVANNIYYIDSQ---MHTINVARSDG 1120 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~-g~~~~~i~~~-~~~~p~glAvDw~~~~LY~td~~---~~~I~v~~ldG 1120 (1332)
.+.+++|++.++.|+++. .+.|+.+++.+ +. ...+... ....+..+++.+.++.|+++... ...|..+++++
T Consensus 43 ~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp CCEEEEECTTSSEEEEEE--TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred ceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCC-ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 467899999999888875 67899999874 33 2222211 12456789999989999888633 45677777766
Q ss_pred ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc-
Q psy5806 1121 QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS- 1199 (1332)
Q Consensus 1121 ~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~- 1199 (1332)
.....+... ..+..++++|...+|+++.... ..-+|+.+++++.....+.. .-..+..++++++++.|+++..
T Consensus 120 ~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 120 GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRD----QVFDIYSMDIDSGVETRLTH-GEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp CCCEECCSS-SSEEEEEECTTSSEEEEEEEET----TEEEEEEEETTTCCEEECCC-SSSCEEEEEECTTSSEEEEEECT
T ss_pred CceEEeecC-CCccceEECCCCCEEEEEECCC----CceEEEEEECCCCcceEccc-CCCccccceECCCCCEEEEEecC
Confidence 554444332 4578899999888888775433 13478888887766554443 3356788999999998988754
Q ss_pred -CCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC----------CCEEEEEEecCC
Q psy5806 1200 -TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE----------AMSVVIAREKSD 1258 (1332)
Q Consensus 1200 -~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~----------~~~V~~~~~~~g 1258 (1332)
...+|+.++.++.....+.. ......+++ ++.+.+|+++... ...|+.++..++
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHP-----SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEE-----CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEE-----CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 34567777766655444433 334455666 3456677776643 256888887665
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0034 Score=72.87 Aligned_cols=252 Identities=9% Similarity=0.046 Sum_probs=153.1
Q ss_pred CCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCC------CCc---EEEec-----ccccCceeEEeCCCCCeEEEE
Q psy5806 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG------TNR---AVFET-----EVIWPSCLAIDYSDNPKLYWV 890 (1332)
Q Consensus 825 ~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG------~~~---~~l~~-----~l~~P~gl~iD~~~~~~lYw~ 890 (1332)
.-|.+|++|..+|++|++--.-..+...++-...++. .+. +..-+ .+..+.++.+|..+ ||++.
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~--rLWVL 103 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCR--RLWVV 103 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTC--EEEEE
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCC--cEEEE
Confidence 4699999985669999986321101123444444431 111 22211 16677899999855 99999
Q ss_pred eCCC---------------CeEEEEccCCC--ce-eEEe--c----cCCcceEEEEe---------CCEEEEEeCCCCEE
Q psy5806 891 DTSK---------------HTIEYKTLATG--RA-KRAY--A----VQSHPYTLTVL---------DYYVYWTDVQHSKI 937 (1332)
Q Consensus 891 d~~~---------------~~I~~~~~dG~--~~-~~l~--~----~~~~P~~la~~---------~~~iywtD~~~~~i 937 (1332)
|.+. -+|..+|+... .. +.+. . +.+....|+++ ++++|.+|.....|
T Consensus 104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gL 183 (381)
T 3q6k_A 104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGAL 183 (381)
T ss_dssp ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEE
T ss_pred eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcE
Confidence 9763 15777888665 22 1211 1 22334567777 57899999888888
Q ss_pred EEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEE
Q psy5806 938 YRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLY 1017 (1332)
Q Consensus 938 ~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~ 1017 (1332)
..++..+++..| +.+.+ . .|+.+..|
T Consensus 184 IVydl~~~~swR---------v~~~~--~-------------------------------------------~pd~~~~~ 209 (381)
T 3q6k_A 184 FIYDHKKQDSWN---------VTHPT--F-------------------------------------------KAERPTKF 209 (381)
T ss_dssp EEEETTTTEEEE---------EECGG--G-------------------------------------------SCCSCEEE
T ss_pred EEEECCCCcEEE---------EccCC--C-------------------------------------------ccccCcce
Confidence 887777664333 11110 0 01111111
Q ss_pred EeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCC----CcEEEEEeCCCCeEEEEE---CCCCCC---ceeEeecC
Q psy5806 1018 TSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYS----KNLIYFADMRSGNLRTFD---MSDSTR---IKPIPLMN 1087 (1332)
Q Consensus 1018 ~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~----~~~lY~sd~~~~~I~~~~---l~~g~~---~~~i~~~~ 1087 (1332)
.-.+. -. . + ...+.+|+.++. ++.|||.-..+.+++++. |.+.+. .+.+...+
T Consensus 210 ~i~G~-~~--~----------~----~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg 272 (381)
T 3q6k_A 210 DYGGK-EY--E----------F----KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG 272 (381)
T ss_dssp EETTE-EE--E----------E----CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC
T ss_pred EECCE-Ee--E----------e----ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC
Confidence 11111 00 0 0 113567777776 789999998888999997 443322 22232222
Q ss_pred -CCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-c----eEEEEe--cCCCCceEEEEcCCCcEEEEEec
Q psy5806 1088 -DTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-Q----HKKILV--NDLMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1088 -~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~----~~~~~~--~~~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
.....++|+|..+++||+++.+.+.|..++.++ . ...++. ..+..|.+|++++ +|+||++..
T Consensus 273 ~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~g~Lwv~sn 342 (381)
T 3q6k_A 273 KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-KGGLWFMSN 342 (381)
T ss_dssp TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-TSCEEEEEC
T ss_pred CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-CCeEEEEEC
Confidence 133457899877999999999999999999988 3 234432 3566799999997 789999863
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00048 Score=78.56 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=113.9
Q ss_pred CCCeEEEEECCCCCCceeEeecCCCCceeeEEEec----CC---eEEEEcCC--CceEEEEeeCCce--EEEE-------
Q psy5806 1065 RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWV----AN---NIYYIDSQ--MHTINVARSDGQH--KKIL------- 1126 (1332)
Q Consensus 1065 ~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~----~~---~LY~td~~--~~~I~v~~ldG~~--~~~~------- 1126 (1332)
..+-|+.++|+ |...+.+ ..+.++++.+-.. ++ .+|+++.. .++|.++++|... ...+
T Consensus 48 k~~gL~Vydl~-G~~l~~~---~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv 123 (355)
T 3amr_A 48 KKSGLVVYSLD-GKMLHSY---NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPI 123 (355)
T ss_dssp TTTEEEEEETT-SCEEEEE---CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCE
T ss_pred CCCCEEEEcCC-CcEEEEc---cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCc
Confidence 44567777764 4433332 2245666555431 11 46899998 8999999887322 2223
Q ss_pred ecCCCCceEEEE--cCCCc--EEEEEecCCCCCCCCCcEEEEec----CCCceEEEEec--CCCCcceEEEecCCCEEEE
Q psy5806 1127 VNDLMEPLAIAV--YPRRG--LLFYSHWGLYDNSPTTKIEKVYL----DGSYRTVLVEE--DLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1127 ~~~~~~P~~iav--dp~~g--~Lywtd~~~~~~~~~~~I~r~~l----dG~~~~~l~~~--~l~~p~glaiD~~~~~LY~ 1196 (1332)
.+++..|+||++ +|..| ++|+++.. +++....+ +|.....++.+ --..|.|+++|.+.++||+
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~-------G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKE-------GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSS-------SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCC-------CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 144578999999 88777 46666643 45666444 22222222221 1257999999999999999
Q ss_pred EEcCCCeEEEEecC--CC-ceEEEEe------ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1197 ADSTNKRIEYCDFF--GR-SRKIVIS------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~d--G~-~~~~~~~------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
++...+ |++++.+ +. .++.+.. ...|.||++. +..+-.++|++++..+++...++..
T Consensus 197 ~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~--~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 197 AEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIY--YAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEE--ECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEE--ecCCCCEEEEEEcCCCCEEEEEECC
Confidence 998865 9999965 32 3444432 2489999991 0111126999999999999999875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00027 Score=78.54 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=138.0
Q ss_pred ceEEEEeecceEEEEeCCC-CCCCCcccccCCccceEEEEEeCCCcEEEEEeCC---CCeEEEEECCCCCCceeEeecCC
Q psy5806 1013 EFLLYTSRFGVIRRISLDT-ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR---SGNLRTFDMSDSTRIKPIPLMND 1088 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~-~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~---~~~I~~~~l~~g~~~~~i~~~~~ 1088 (1332)
.+|++..... |+.++++. .... .+........+..++|++.++.|+++... ...|+.+++.++ ....+. ..
T Consensus 54 ~~l~~~~~~~-i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~--~~ 128 (297)
T 2ojh_A 54 KYLLLNSEGL-LYRLSLAGDPSPE-KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG-TPRLMT--KN 128 (297)
T ss_dssp SEEEEEETTE-EEEEESSSCCSCE-ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC-CCEECC--SS
T ss_pred CEEEEEcCCe-EEEEeCCCCCCce-EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC-ceEEee--cC
Confidence 3555555556 77777765 3221 11111112345678899999999988743 467888887633 222222 23
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEe--eCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVAR--SDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~--ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l 1166 (1332)
..+..+++.+.++.|+++....+.+.++. +++.....+......+..++++|...+|+++.... ...+|+.+++
T Consensus 129 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~~i~~~~~ 204 (297)
T 2ojh_A 129 LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT----GQMQIWRVRV 204 (297)
T ss_dssp SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEET
T ss_pred CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCC----CCccEEEECC
Confidence 34677888888888987765556566555 44444444444445789999999777788875322 2468999988
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcC----------CCeEEEEecCCCceEEEEe----ecccceEEEecCC
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST----------NKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSP 1232 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~----------~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~ 1232 (1332)
++.....+.. .......++++++++.|+++... ...|...|+++...+.+.. ...+..+++
T Consensus 205 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---- 279 (297)
T 2ojh_A 205 DGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNW---- 279 (297)
T ss_dssp TSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCB----
T ss_pred CCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceE----
Confidence 8876655443 22345568899999998887653 2569999998766544443 234555666
Q ss_pred ccccccEEEEEECC
Q psy5806 1233 GKAFIVELYWTDWE 1246 (1332)
Q Consensus 1233 ~~~~~~~lYwtd~~ 1246 (1332)
.+.+.+|+++...
T Consensus 280 -spdg~~l~~~~~~ 292 (297)
T 2ojh_A 280 -SPDGDEFAYVRYF 292 (297)
T ss_dssp -CTTSSEEEEEEEC
T ss_pred -CCCCCEEEEEEec
Confidence 3456667766543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00057 Score=77.95 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=100.1
Q ss_pred EEEEEeCC--CCeEEEEECCCCCC-ceeE------eecCCCCceeeEE--EecCCe--EEEEcCCCceEEEEee----CC
Q psy5806 1058 LIYFADMR--SGNLRTFDMSDSTR-IKPI------PLMNDTIRDNFVI--DWVANN--IYYIDSQMHTINVARS----DG 1120 (1332)
Q Consensus 1058 ~lY~sd~~--~~~I~~~~l~~g~~-~~~i------~~~~~~~p~glAv--Dw~~~~--LY~td~~~~~I~v~~l----dG 1120 (1332)
.+|.++.. .++|..+.++..+. ...+ +.+.+..|.||++ +..++. +|+++.+ ++++.+++ +|
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g 166 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNG 166 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTS
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCC
Confidence 57889987 88887776642121 2222 1134478999999 876664 7777776 68877666 23
Q ss_pred ce--EEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc---eEEEEe---cCCC-CcceEEEec
Q psy5806 1121 QH--KKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY---RTVLVE---EDLA-FPNELAIDF 1189 (1332)
Q Consensus 1121 ~~--~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~---~~~l~~---~~l~-~p~glaiD~ 1189 (1332)
.. +.+ +.-+ ..|.++++|+..|+||++++.. -|+|++.+... .+.+.. ..+. .|.||+|.+
T Consensus 167 ~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~-------GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 167 YISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDE-------AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp CEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTT-------EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred cccceEEEEecCC-CCcceEEEcCCCCeEEEecccc-------eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 22 111 3223 5899999999999999999865 39999965332 233321 2233 799999975
Q ss_pred C--C-CEEEEEEcCCCeEEEEecCCCc
Q psy5806 1190 K--Q-RRLFWADSTNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1190 ~--~-~~LY~~d~~~~~I~~~d~dG~~ 1213 (1332)
. + +.|+.++.++++...+|..+.+
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred cCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 3 3 4799999999999999997654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0041 Score=79.45 Aligned_cols=164 Identities=8% Similarity=0.076 Sum_probs=105.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCC----CeEEEEECCCCCCceeEeecCC----CCceeeEEEe--cCCeEEEEcCC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS----GNLRTFDMSDSTRIKPIPLMND----TIRDNFVIDW--VANNIYYIDSQ-MHTIN 1114 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~----~~I~~~~l~~g~~~~~i~~~~~----~~p~glAvDw--~~~~LY~td~~-~~~I~ 1114 (1332)
.+..++|++.+++|+++.... ..|+.+++.+|.....+..... .....+++.+ .++.||.++.. ..+|.
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 467899999999999865433 3788899875523333332111 1235678876 66666655443 23455
Q ss_pred EEeeCCceEEEEecCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1115 VARSDGQHKKILVNDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1115 v~~ldG~~~~~~~~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
.++++|.....+..+...... ++++|....||++.... +.....|++.++++...+.+.. ......++++++++.
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA--SPLERHFYCIDIKGGKTKDLTP--ESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS--CTTCBEEEEEETTCCCCEESCC--SSSEEEEEECTTSSE
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC--CCceEEEEEEEcCCCCceeccC--CCceEEEEECCCCCE
Confidence 555566655555444333444 79999888999987554 1123589999998766544432 234567899999988
Q ss_pred EEEEEcCC---CeEEEEecCCCc
Q psy5806 1194 LFWADSTN---KRIEYCDFFGRS 1213 (1332)
Q Consensus 1194 LY~~d~~~---~~I~~~d~dG~~ 1213 (1332)
|.++-... ..|...|.++..
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 87764432 569999988765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0088 Score=76.74 Aligned_cols=361 Identities=12% Similarity=0.083 Sum_probs=197.4
Q ss_pred ceEEEEEEccCCeEEEEcCCCc-----eEEEEEecCcceEEEEeCCCC------------------------CCccEEEe
Q psy5806 468 SVVAIAWESANDSLYWADVENG-----EINRAHINGTFQYNVIRHNTK------------------------KPAGVAID 518 (1332)
Q Consensus 468 ~~~~i~~d~~~~~lywsD~~~~-----~I~r~~~~g~~~~~v~~~~~~------------------------~p~glAvD 518 (1332)
.+..++|.+..++|+++...++ .|+..++++.....++..... .+..+++.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4668889888888888765344 788888876655555543221 25788999
Q ss_pred ccCCeEEEEeCCCCeEEEEeCCCC---CcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCC
Q psy5806 519 WRTNKLYWTESEYNWIEVSNLDGT---YPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDS 595 (1332)
Q Consensus 519 w~~~~lYw~d~~~~~I~v~~l~g~---~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~ 595 (1332)
+.++.|+++.. +.|.+.++++. ..+.+. .....+..+++.|...+|.++.. ..|...++++.....+....
T Consensus 118 pDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~~---~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 118 PDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIRG---RNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp TTSSEEEEEET--TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEET---TEEEEEETTTTEEEECCCCC
T ss_pred CCCCEEEEEeC--CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEeC---CcEEEEecCCCCEEEeccCC
Confidence 98999998875 88999999876 443333 23356789999999887888763 36888888776544443322
Q ss_pred CC----------------CceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCC
Q psy5806 596 LK----------------NPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRR 659 (1332)
Q Consensus 596 l~----------------~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~ 659 (1332)
.. .+.++++.+.+++|+++......+..... ... .+. ......+..
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~-----~~~--~p~--------~~~~~~~~~--- 253 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKR-----YEV--YAD--------RTDVIEQRY--- 253 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEE-----EEE--CSS--------CEEEEEEEC---
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEec-----CCC--CCC--------cccceEeec---
Confidence 11 14678888888888876432111100000 000 000 000000000
Q ss_pred CcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCC-CCCcceeeec--c
Q psy5806 660 SKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDV-EYRYPIVLPL--R 736 (1332)
Q Consensus 660 q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~-~~~~~~~~~~--~ 736 (1332)
+.+ +. ..+ ...|+.+++++ ... ..+.. .
T Consensus 254 -------------------~~~-----------------g~---~~~--------~~~l~~~d~~~~~~~--~~~~~~~~ 284 (741)
T 2ecf_A 254 -------------------PAA-----------------GD---ANV--------QVKLGVISPAEQAQT--QWIDLGKE 284 (741)
T ss_dssp -------------------CBT-----------------TS---CCC--------EEEEEEECSSTTCCC--EEECCCSC
T ss_pred -------------------CCC-----------------CC---CCC--------eeEEEEEECCCCCce--EEecCCCC
Confidence 000 00 000 01122222222 110 00100 0
Q ss_pred cccceeEEeecCCCceEEEEec----CCCceEEEecCCCCceEEEeCCCC----CccceeEecCCCeEEEEeCCC--CeE
Q psy5806 737 QLKMVASVDVDTKNEYIYWSDI----SEKTIERVRFDMTGRERLVVNDLN----RTESIAVDAIGRKIYWTDMNA--QTI 806 (1332)
Q Consensus 737 ~~~~~~~id~d~~~~~lYwsD~----~~~~I~r~~~~g~~~~~vi~~~~~----~p~glAvD~~~~nLYwtD~~~--~~I 806 (1332)
....+..+++ +.+..|+++.. ....|+..++.+.....++..... ....+++...++ ++++.... .+|
T Consensus 285 ~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l 362 (741)
T 2ecf_A 285 QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHL 362 (741)
T ss_dssp SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEE
T ss_pred cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEE
Confidence 1223456677 77777776543 245677777765554444432211 345788888777 66664433 467
Q ss_pred EEEeCCCCceEEEEecCCCCCeEE-EEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCC
Q psy5806 807 MVSDIDGKNAKVLFWLNLYRPRSI-VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNP 885 (1332)
Q Consensus 807 ~v~~ldG~~~~~l~~~~~~~P~~I-avdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~ 885 (1332)
...+++|. .+.+.. .......+ +++|...+||++..... ....+|++..++|...+.|.. ......+++..++ +
T Consensus 363 ~~~~~~~~-~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~-~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg-~ 437 (741)
T 2ecf_A 363 YRIDSKGK-AAALTH-GNWSVDELLAVDEKAGLAYFRAGIES-ARESQIYAVPLQGGQPQRLSK-APGMHSASFARNA-S 437 (741)
T ss_dssp EEECSSSC-EEESCC-SSSCEEEEEEEETTTTEEEEEECSSC-TTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTS-S
T ss_pred EEEcCCCC-eeeeee-cceEEEeEeEEeCCCCEEEEEEeCCC-CceEEEEEEEcCCCCeeeccc-CCCceEEEECCCC-C
Confidence 77777777 444332 22334566 58998778877654321 001368888888876665543 2222466777777 6
Q ss_pred eEEEEeCCC---CeEEEEccCCCcee
Q psy5806 886 KLYWVDTSK---HTIEYKTLATGRAK 908 (1332)
Q Consensus 886 ~lYw~d~~~---~~I~~~~~dG~~~~ 908 (1332)
+|.+.-... ..++..+.+|...+
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRANGEKIA 463 (741)
T ss_dssp EEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred EEEEEecCCCCCCeEEEEEcCCCeEE
Confidence 666553322 34566666665433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.017 Score=65.25 Aligned_cols=228 Identities=7% Similarity=-0.109 Sum_probs=146.2
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCccccc---CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-EeecCC
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPF---PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-IPLMND 1088 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi---~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~~~ 1088 (1332)
.+|+...... |+..++...........+ .....+..++|++.++.|+... ..+.|...++.++..... ......
T Consensus 64 ~~l~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 141 (337)
T 1gxr_A 64 RHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSA 141 (337)
T ss_dssp SEEEEECBSE-EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSS
T ss_pred cEEEEcCCCe-EEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCCcceeeecccCC
Confidence 4555555444 776777654332222211 2234567999999888777765 678899999875442222 222334
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
..+..+++.+.++.|+.+. ..+.|.++++.... ...+......+..++++|...+|+.+... +.|...++.
T Consensus 142 ~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~ 213 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLR 213 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC-------CcEEEEECC
Confidence 4567899987677776654 45689999997543 33354444578999999966566655432 568888887
Q ss_pred CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC
Q psy5806 1168 GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
......... .-..+..+++.++++.|+.+. ..+.|...++.......+.. ...+.++++ .+.+.+| ++-..
T Consensus 214 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l-~~~~~ 285 (337)
T 1gxr_A 214 EGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHESCVLSLKF-----AYCGKWF-VSTGK 285 (337)
T ss_dssp TTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCCSSCEEEEEE-----CTTSSEE-EEEET
T ss_pred CCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCCccceeEEEE-----CCCCCEE-EEecC
Confidence 655444443 235577899998888888765 56789999998765544433 566778888 2234444 45456
Q ss_pred CCEEEEEEecCC
Q psy5806 1247 AMSVVIAREKSD 1258 (1332)
Q Consensus 1247 ~~~V~~~~~~~g 1258 (1332)
.+.|...+..++
T Consensus 286 dg~i~~~~~~~~ 297 (337)
T 1gxr_A 286 DNLLNAWRTPYG 297 (337)
T ss_dssp TSEEEEEETTTC
T ss_pred CCcEEEEECCCC
Confidence 789999998777
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0015 Score=77.92 Aligned_cols=180 Identities=7% Similarity=-0.061 Sum_probs=124.2
Q ss_pred CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC--ceEEEEeeCCceEEEEecCCCCceEEEEcCCCcE
Q psy5806 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM--HTINVARSDGQHKKILVNDLMEPLAIAVYPRRGL 1144 (1332)
Q Consensus 1067 ~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~--~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~ 1144 (1332)
+.|+..+++ +.....+. .....+..+++.+.++.|+++.... ..|.++++.+.....+........+++++|...+
T Consensus 159 ~~i~i~d~~-g~~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETT-SCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCC-CCCCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence 567777776 44444443 2344678899999899998876543 5899999975444444444456789999997777
Q ss_pred EEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC--CeEEEEecCCCceEEEEe-ec
Q psy5806 1145 LFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN--KRIEYCDFFGRSRKIVIS-KV 1221 (1332)
Q Consensus 1145 Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~--~~I~~~d~dG~~~~~~~~-~~ 1221 (1332)
|+++.... ....|+..++.+.....+.. .-.....+++.++++.|+++.... .+|+..|+++...+.+.. ..
T Consensus 237 la~~~~~~----g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~ 311 (415)
T 2hqs_A 237 LAFALSKT----GSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 311 (415)
T ss_dssp EEEEECTT----SSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred EEEEEecC----CCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCC
Confidence 88776432 23579999998766544433 234567889999999898876433 379999998765444433 44
Q ss_pred ccceEEEecCCccccccEEEEEECC--CCEEEEEEecCC
Q psy5806 1222 APYGLSVRQSPGKAFIVELYWTDWE--AMSVVIAREKSD 1258 (1332)
Q Consensus 1222 ~P~glav~~~~~~~~~~~lYwtd~~--~~~V~~~~~~~g 1258 (1332)
...++++ ++++.+|+++... ...|+.++..++
T Consensus 312 ~~~~~~~-----spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 312 QNQDADV-----SSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEEE-----CTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred cccCeEE-----CCCCCEEEEEECcCCceEEEEEECCCC
Confidence 5556777 4567788888764 458888998776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.048 Score=63.70 Aligned_cols=332 Identities=8% Similarity=-0.081 Sum_probs=177.9
Q ss_pred CCCeEEEEeCCCC-eEEEEecccCcCCCCceEEEec----C-CC------CcEEEecc----------cccCceeEEeCC
Q psy5806 825 YRPRSIVVHYGLG-LMVWADWSRTRLTNNRIEMAHM----D-GT------NRAVFETE----------VIWPSCLAIDYS 882 (1332)
Q Consensus 825 ~~P~~Iavdp~~g-~lywtd~g~~~~~~~~I~r~~~----d-G~------~~~~l~~~----------l~~P~gl~iD~~ 882 (1332)
....+++++|... +|+.... . ..|....+ . |. ....+... -.....+++...
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~--d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEK--N----SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEET--B----TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred CceEEEEECCCCCcEEEEecC--C----ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 4578899999855 5555442 2 35665555 3 33 12222221 114557888887
Q ss_pred CCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEE
Q psy5806 883 DNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLV 960 (1332)
Q Consensus 883 ~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~ 960 (1332)
+ +.|+.+. ..+.|...+.+|.....+........++++. +.+|+.. ...+.|...+..++..+..... .
T Consensus 120 ~-~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~---~--- 190 (425)
T 1r5m_A 120 G-NSIVTGV-ENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQHFEL---K--- 190 (425)
T ss_dssp S-SEEEEEE-TTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEEEECC---C---
T ss_pred C-CEEEEEe-CCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEeec---c---
Confidence 7 6665554 4567777777776655554333445667765 3344443 3456666666655533321000 0
Q ss_pred eccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEe-ecceEEEEeCCCCCCCCccc
Q psy5806 961 RAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTS-RFGVIRRISLDTADLLPVTL 1039 (1332)
Q Consensus 961 ~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~-~~~~i~~i~l~~~~~~~~~~ 1039 (1332)
..+....+.... .+.+... ..... .|...++... ... |+..++.........
T Consensus 191 --~~~~~~~~~~~~-----------~~~~~~~---~~~~~---------~~~~~~~~~~~~g~-i~~~d~~~~~~~~~~- 243 (425)
T 1r5m_A 191 --ETGGSSINAENH-----------SGDGSLG---VDVEW---------VDDDKFVIPGPKGA-IFVYQITEKTPTGKL- 243 (425)
T ss_dssp ----------------------------CCCB---SCCEE---------EETTEEEEECGGGC-EEEEETTCSSCSEEE-
T ss_pred --ccCccceeeccc-----------cCCccee---eEEEE---------cCCCEEEEEcCCCe-EEEEEcCCCceeeee-
Confidence 000000000000 0000000 00000 1223333333 344 777776543221111
Q ss_pred ccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1040 PFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1040 pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
. .....+..++|++.++.|+.+. ..+.|+..++..+.....+. .....+..+++.+.+ ++++....+.|.++++.
T Consensus 244 ~-~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 244 I-GHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp C-CCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT--EEEEEETTSEEEEEETT
T ss_pred c-cCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCccceEec-CCCccEEEEEECCCC--EEEEEeCCCcEEEEECC
Confidence 1 1223467899999888776665 67889988877544443332 234467788888655 55565667899999997
Q ss_pred C-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc--------------------eEEEEecC
Q psy5806 1120 G-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY--------------------RTVLVEED 1178 (1332)
Q Consensus 1120 G-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~--------------------~~~l~~~~ 1178 (1332)
. +....+......+..++++|...+|+.+... +.|...++.... ....+...
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD-------GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEECTTSSEEEEEETT-------SCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred CCcEeEecccCCccEEEEEEcCCCCEEEEEECC-------CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 4 4444454444678899999966666555432 457776765443 22233322
Q ss_pred CC--CcceEEEecCCCEEEEEEcCCCeEEEEecCC
Q psy5806 1179 LA--FPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1179 l~--~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
.. .+..+++.++++.|+.+. ..+.|...+++|
T Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~g 425 (425)
T 1r5m_A 392 QDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIPG 425 (425)
T ss_dssp TCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECCC
T ss_pred ccCCceEEEEccCCCceEEEEe-cCceEEEEeecC
Confidence 22 677889988888777664 556787777765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0013 Score=73.77 Aligned_cols=188 Identities=9% Similarity=-0.060 Sum_probs=124.2
Q ss_pred ceEEEEecCCCceEEEec-CCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeE
Q psy5806 751 EYIYWSDISEKTIERVRF-DMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRS 829 (1332)
Q Consensus 751 ~~lYwsD~~~~~I~r~~~-~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~ 829 (1332)
+.+++++...+.|+.++. +|...-++-..+...+.++++.+.++ ||++ ..+.|...+.+|+..-.+-...-..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 345555555555555554 33332222222223577888887654 6664 3567888988887655443221123456
Q ss_pred EEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEec-----c-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC
Q psy5806 830 IVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET-----E-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903 (1332)
Q Consensus 830 Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~-----~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d 903 (1332)
.++.+. |.+++++.+.. .+|...+.+|+....+.- . ...|.+++++..+ ++++++...++|..++.+
T Consensus 82 ~~~~~d-G~~lv~~~~~~----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 82 ARILPD-GNALVAWCGHP----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKG--NYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEECTT-SCEEEEEESTT----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEECTT
T ss_pred cEECCC-CCEEEEecCCC----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCC--CEEEEecCCCEEEEECCC
Confidence 667665 88888876623 477777788876544431 1 3467788888766 677888889999999999
Q ss_pred CCceeEEeccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEE
Q psy5806 904 TGRAKRAYAVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIV 949 (1332)
Q Consensus 904 G~~~~~l~~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~ 949 (1332)
|.....+.. -..|+++... ++.++.++...++|+.+++.+|+++.
T Consensus 155 G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 155 GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 876666543 2568887776 67889999999999999999886655
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.14 Score=66.32 Aligned_cols=467 Identities=10% Similarity=0.039 Sum_probs=227.7
Q ss_pred ccceEeeccceeEEEecCCCCCcceeeecc-cccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCC--CC
Q psy5806 707 SKFLLVSQTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDL--NR 783 (1332)
Q Consensus 707 ~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~-~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~--~~ 783 (1332)
...|.+.+...+.+.+.............. ....+.+|..|. ++.||++.. +.|++.+........ +..+. ..
T Consensus 98 ~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~-~g~lwi~t~--~gl~~~~~~~~~~~~-~~~~~~~~~ 173 (795)
T 4a2l_A 98 QGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEIS-PEQLLISTP--EGLIMFDIKESKFID-DSFSTAMHK 173 (795)
T ss_dssp TSCEEEEESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEE-TTEEEEEET--TEEEEEETTTTEEEC-SSSCHHHHT
T ss_pred CCCEEEEeCCchheeCCCCCeEEeccccccCCCceEEEEEECC-CCCEEEEEC--CceEEEECCCCEEEe-ccCCCCCCc
Confidence 445666666777777654322111100000 000145566664 367777644 457777654321111 11111 12
Q ss_pred -ccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE-ecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCC
Q psy5806 784 -TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF-WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861 (1332)
Q Consensus 784 -p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~-~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG 861 (1332)
+..|+.|. .++||+.... +.|.+.+..+.....+. .......++|..|+. |.|++...+. -+.+.+...
T Consensus 174 ~i~~i~~d~-~g~lwigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~-g~lwigt~~~------Gl~~~~~~~ 244 (795)
T 4a2l_A 174 TIASTLYRQ-GDQIYIGTST-DGLYTYSITQKTFEKVIPILGTKQIQAILQQSP-TRIWVATEGA------GLFLINPKT 244 (795)
T ss_dssp CCEEEEEEE-TTEEEEEESS-SCEEEEETTTCCEEECC----CCCEEEEEEEET-TEEEEEEBSS------CEEEEETTT
T ss_pred ceEEEEECC-CCCEEEEECC-CCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC-CCEEEEECCC------CeEEEeCCC
Confidence 55677875 4457765432 24666665433222221 111234678888875 7777655332 266655443
Q ss_pred CCcEEEecc--------cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec------cC--CcceEEEEeCC
Q psy5806 862 TNRAVFETE--------VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA------VQ--SHPYTLTVLDY 925 (1332)
Q Consensus 862 ~~~~~l~~~--------l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~------~~--~~P~~la~~~~ 925 (1332)
.....+... -.....|..|..+ +|+++... -|...+......+.+.. .+ ....+|..+.+
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 245 KEIKNYLHSPSNPKSISSNYIRSLAMDSQN--RLWIGTFN--DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TEEEEECCCTTCTTSCSCSBEEEEEECTTS--CEEEEESS--CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred CeEEEeecCCCCccccCCCeEEEEEEcCCC--CEEEEeCC--hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 322222111 1223467777655 66665543 46666665544444321 12 22355666644
Q ss_pred EEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCC-ccccCCCCeeEccCC
Q psy5806 926 YVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADR 1004 (1332)
Q Consensus 926 ~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~-~~C~Cp~g~~l~~d~ 1004 (1332)
-..|.-...+-|.+.++..+. +. .+... + . .++ | +.. ..+ +..|
T Consensus 321 g~lWigt~~~Gl~~~~~~~~~---------~~-~~~~~-~----~----~~~----l----~~~~V~~-------i~~d- 365 (795)
T 4a2l_A 321 GGMWLGTYFGGLNYYHPIRNR---------FK-NIRNI-P----Y----KNS----L----SDNVVSC-------IVED- 365 (795)
T ss_dssp SCEEEEESSSCEEEECGGGGS---------SE-EECCC-T----T----SSS----C----SCSSEEE-------EEEC-
T ss_pred cCEEEEECCCCeEEeCCCccc---------ce-EEcCC-C----C----CCC----C----CCCeeEE-------EEEC-
Confidence 444554444445554432220 00 11000 0 0 000 0 000 001 1111
Q ss_pred ccccccCcceEEEEeec-ceEEEEeCCCCCCCCccccc------CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC
Q psy5806 1005 RSCFSRTREFLLYTSRF-GVIRRISLDTADLLPVTLPF------PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS 1077 (1332)
Q Consensus 1005 ~tC~~~p~~~ll~~~~~-~~i~~i~l~~~~~~~~~~pi------~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g 1077 (1332)
.+..|.+.+.. . |..++...........+. .....+.++..|..++.||+.. ..+-|++++..++
T Consensus 366 ------~~g~lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 366 ------KDKNLWIGTNDGG-LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-HAGGLSILHRNSG 437 (795)
T ss_dssp ------TTSCEEEEESSSC-EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-TTTEEEEEETTTC
T ss_pred ------CCCCEEEEECCCC-eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-CcCceeEEeCCCC
Confidence 12234344432 4 555544322111000000 0123467888886654366654 4456888886532
Q ss_pred CCceeEee----cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec-----C--CCCceEEEEcCCCcEEE
Q psy5806 1078 TRIKPIPL----MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-----D--LMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1078 ~~~~~i~~----~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~-----~--~~~P~~iavdp~~g~Ly 1146 (1332)
. ...+.. .....+..|+.|. .++||++.. +.+.+++.+....+.+.. + ....++|+.|+ +|.|+
T Consensus 438 ~-~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lW 512 (795)
T 4a2l_A 438 Q-VENFNQRNSQLVNENVYAILPDG-EGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLW 512 (795)
T ss_dssp C-EEEECTTTSCCSCSCEEEEEECS-SSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEE
T ss_pred c-EEEeecCCCCcCCCeeEEEEECC-CCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEE
Confidence 2 222211 0123567888885 677887765 457777776443333211 1 24578899997 78888
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEe----cCC--CCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVE----EDL--AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS- 1219 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~----~~l--~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~- 1219 (1332)
++..++ |.+.+.++... .+.. ..+ ....+|..|. +++|+++... -|.++|.....-+.+-.
T Consensus 513 igt~~G--------l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~~--Gl~~~d~~~~~~~~~~~~ 580 (795)
T 4a2l_A 513 IGGEEG--------LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEAS-NGIIWVGTRE--GFYCFNEKDKQIKRYNTT 580 (795)
T ss_dssp EEESSC--------EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECT-TSCEEEEESS--CEEEEETTTTEEEEECGG
T ss_pred EEeCCc--------eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECC-CCCEEEEeCC--CceeECCCCCcEEEeCCC
Confidence 876543 88888765443 2211 011 2355677774 5667777653 58888876543332221
Q ss_pred ----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.....+|+. +.++.||++- .+.|.++++.++
T Consensus 581 ~gl~~~~i~~i~~------d~~g~lWi~t--~~Gl~~~~~~~~ 615 (795)
T 4a2l_A 581 NGLPNNVVYGILE------DSFGRLWLST--NRGISCFNPETE 615 (795)
T ss_dssp GTCSCSCEEEEEE------CTTSCEEEEE--TTEEEEEETTTT
T ss_pred CCCchhheEEEEE------CCCCCEEEEc--CCceEEEcCCCC
Confidence 233566777 4577888876 367888887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0013 Score=83.43 Aligned_cols=200 Identities=8% Similarity=-0.124 Sum_probs=122.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCC---------CeEEEEECCCC-----CCceeEee-cCCCCceeeEEEecCCeEEEEcCCC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS---------GNLRTFDMSDS-----TRIKPIPL-MNDTIRDNFVIDWVANNIYYIDSQM 1110 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~---------~~I~~~~l~~g-----~~~~~i~~-~~~~~p~glAvDw~~~~LY~td~~~ 1110 (1332)
...+++|++.+++|+++.... ..|+.++++++ .... .+. .+.....++++.+.++.|+++....
T Consensus 131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECT
T ss_pred cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCC
Confidence 467899999999999886431 47999998731 2222 232 3334567789999999999875432
Q ss_pred -------ceEEEEeeCC-c---eEEEEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC
Q psy5806 1111 -------HTINVARSDG-Q---HKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED 1178 (1332)
Q Consensus 1111 -------~~I~v~~ldG-~---~~~~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~ 1178 (1332)
..|.++++++ . ....+..+ ...+..++.+|... ||++.... ...+|++.++++...+.+....
T Consensus 210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~ 284 (662)
T 3azo_A 210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT----GWWNLHRVDPATGAATQLCRRE 284 (662)
T ss_dssp TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT----SSCEEEEECTTTCCEEESSCCS
T ss_pred CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC----CCeEEEEEECCCCceeeccccc
Confidence 5799999984 2 23334333 35788999999554 66654322 1358999999666655554322
Q ss_pred --CCC------cceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceE-EEecCCccccccEEEEEECCC-
Q psy5806 1179 --LAF------PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGL-SVRQSPGKAFIVELYWTDWEA- 1247 (1332)
Q Consensus 1179 --l~~------p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~gl-av~~~~~~~~~~~lYwtd~~~- 1247 (1332)
... ...+++.++++.+|.+..+..+|+.+|++|...+.+.. .....++ +. .++.++++-...
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~-------~~~~~~~~~~~~~ 357 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTV-------SGTRAVGVAASPR 357 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSSCCEEEEEEEE-------ETTEEEEEEEETT
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCCCCeEEEEEec-------CCCEEEEEEcCCC
Confidence 111 23566655555555444345568888888665444432 2223345 55 555555554332
Q ss_pred --CEEEEEEecCC
Q psy5806 1248 --MSVVIAREKSD 1258 (1332)
Q Consensus 1248 --~~V~~~~~~~g 1258 (1332)
.+|++++..++
T Consensus 358 ~~~~i~~~d~~~g 370 (662)
T 3azo_A 358 TAYEVVELDTVTG 370 (662)
T ss_dssp EEEEEEEEETTTC
T ss_pred CCCEEEEEECCCC
Confidence 36777776655
|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=5.6e-06 Score=101.08 Aligned_cols=33 Identities=30% Similarity=0.721 Sum_probs=31.4
Q ss_pred CceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 18 ~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.+|+|..+|+|||..|+|||+.||.|||||.+|
T Consensus 69 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c 101 (537)
T 3ojy_B 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101 (537)
T ss_dssp SSEECTTTCCEECGGGTTSSSCCSSSSCTTSSC
T ss_pred CccCcCCCCcEeeccccCCCCCCCCCccccccC
Confidence 799997579999999999999999999999998
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=8.4e-06 Score=66.51 Aligned_cols=40 Identities=30% Similarity=0.708 Sum_probs=35.3
Q ss_pred ccccCCC----------CcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 392 YQSHCAP----------KVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 392 ~~n~C~~----------g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
++|+|.. +.|+|.|++.+++|+|.|+.||+|..|+++|.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 4578872 679999999999999999999999999999963
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=7.6e-06 Score=99.93 Aligned_cols=36 Identities=36% Similarity=0.697 Sum_probs=32.9
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.|. .+|+|..+|+|||..|+|||+.||.|||||.+|
T Consensus 65 ~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~C 100 (554)
T 3ojy_A 65 QCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100 (554)
T ss_dssp CCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSSC
T ss_pred CCC-CcCccCCCCEEcccccccCCcccCCCccccccC
Confidence 464 799997579999999999999999999999999
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.02 Score=64.66 Aligned_cols=191 Identities=6% Similarity=-0.034 Sum_probs=126.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|++.++.|+... ..+.|+..++.++..... +......+..+++++.++.|+.+. ..+.|.++++.......
T Consensus 143 ~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQ-FQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeee-eecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCceEe
Confidence 467899999888777765 678899999874432222 223345678899987776676554 56789999987544333
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~ 1205 (1332)
.......+..++++|....|+..... +.|...++.......+.. .-..+..+++.++++.|+.+ ...+.|.
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~-------~~i~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 290 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMES-------SNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVST-GKDNLLN 290 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCC-------CcEEEEECCCCCeEEEcC-CccceeEEEECCCCCEEEEe-cCCCcEE
Confidence 22334568999999976667666533 468888888766544432 34567789999887777655 4678899
Q ss_pred EEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1206 YCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1206 ~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
..++.......... ...+.++++ .+.+.+|+.+. ..+.|...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~-~dg~i~iw~ 334 (337)
T 1gxr_A 291 AWRTPYGASIFQSKESSSVLSCDI-----SVDDKYIVTGS-GDKKATVYE 334 (337)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEE-----CTTSCEEEEEE-TTSCEEEEE
T ss_pred EEECCCCeEEEEecCCCcEEEEEE-----CCCCCEEEEec-CCCeEEEEE
Confidence 99987655443333 566777887 23344555444 456665554
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0058 Score=70.76 Aligned_cols=234 Identities=10% Similarity=-0.059 Sum_probs=145.2
Q ss_pred CcceEEEEeecceEEEEeCCCCCCCCccc-cc-CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC
Q psy5806 1011 TREFLLYTSRFGVIRRISLDTADLLPVTL-PF-PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND 1088 (1332)
Q Consensus 1011 p~~~ll~~~~~~~i~~i~l~~~~~~~~~~-pi-~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~ 1088 (1332)
|+..|+.+..+..|+.-+++......... .. ..-..+.+++|++.++.|.-.. ..+.|+..++.++.....+. ...
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-~d~~i~iwd~~~~~~~~~~~-~h~ 169 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-KDICIKVWDLAQQVVLSSYR-AHA 169 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEEC-CCS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEEc-CcC
Confidence 44555555554436666665443221111 11 1123467999999888776554 77889999987543332222 234
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEe--cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILV--NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
..+..+++.+.+..++++-...+.|.++++. ++....+. .....+..++++|..+.++.+-... +.|...+
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT------SEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC------CcEEEEE
Confidence 4678899988888888887777899999987 44444432 2224578999999888887775443 5677777
Q ss_pred cCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEE
Q psy5806 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
+........+...-...+.|++.+++.++..+-...+.|...|+.......+.. .....+|++ .+.+.+|..+-
T Consensus 244 ~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~-----sp~~~~llas~ 318 (344)
T 4gqb_B 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATW-----SPLNHSLLTTV 318 (344)
T ss_dssp SCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEE-----CSSSTTEEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEE-----eCCCCeEEEEE
Confidence 754443333333335567889988877766666677889888886543222222 445677777 23455677676
Q ss_pred CCCCEEEEEEecC
Q psy5806 1245 WEAMSVVIAREKS 1257 (1332)
Q Consensus 1245 ~~~~~V~~~~~~~ 1257 (1332)
...++|..-+..+
T Consensus 319 s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 319 GWDHQVVHHVVPT 331 (344)
T ss_dssp ETTSCEEEEECCC
T ss_pred cCCCeEEEEECCC
Confidence 6677887776544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.002 Score=75.22 Aligned_cols=202 Identities=8% Similarity=-0.069 Sum_probs=121.2
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc--eeeEEEecCCeEEEE--------------------
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR--DNFVIDWVANNIYYI-------------------- 1106 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p--~glAvDw~~~~LY~t-------------------- 1106 (1332)
++.|++.+++|+++. ....|+.+++.++... .+........ ...+++..++.|+..
T Consensus 85 ~~~~spdg~~l~~~~-~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 85 GGFLSPDDDALFYVK-DGRNLMRVDLATLEEN-VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp SCEECTTSSEEEEEE-TTTEEEEEETTTCCEE-EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred ceEEcCCCCEEEEEe-CCCeEEEEECCCCcce-eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 457899999999987 4468999998854332 3332211111 112334445555422
Q ss_pred -cCCCceEEEEeeCCceEEEEecCCCCceEEEEcC-CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC-CCcc
Q psy5806 1107 -DSQMHTINVARSDGQHKKILVNDLMEPLAIAVYP-RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL-AFPN 1183 (1332)
Q Consensus 1107 -d~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp-~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l-~~p~ 1183 (1332)
......|.++++++...+.+.........++++| ...+|.++..+.. +....+|+.++++|.....+....- ....
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH-DLVDARMWLINEDGTNMRKVKTHAEGESCT 241 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT-TTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred ccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC-CCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence 1233578888887554444444445678899999 7777777654320 1124589999999987766654221 1234
Q ss_pred eEEEecCCCEEEEE-EcCCC---eEEEEecCCCceEEEEe--e-----cccceEEEecCCccccccEEEEEE--------
Q psy5806 1184 ELAIDFKQRRLFWA-DSTNK---RIEYCDFFGRSRKIVIS--K-----VAPYGLSVRQSPGKAFIVELYWTD-------- 1244 (1332)
Q Consensus 1184 glaiD~~~~~LY~~-d~~~~---~I~~~d~dG~~~~~~~~--~-----~~P~glav~~~~~~~~~~~lYwtd-------- 1244 (1332)
.+++.+++++|+++ +.... .|...|+++...+.+.. . ..|.++++ .+++.+|+++-
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~-----spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM-----VGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE-----EEEECCC------------
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE-----ccCCCcceeEeeecccccc
Confidence 57889899888554 43322 39999998776655544 1 22445444 33666777653
Q ss_pred CCCCEEEEEEecCC
Q psy5806 1245 WEAMSVVIAREKSD 1258 (1332)
Q Consensus 1245 ~~~~~V~~~~~~~g 1258 (1332)
.....|+.++..++
T Consensus 317 ~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 317 ENDPFLYVFNMKNG 330 (388)
T ss_dssp CCCCEEEEEETTTT
T ss_pred CCCCEEEEEeccCC
Confidence 45678888888776
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.3 Score=62.85 Aligned_cols=197 Identities=13% Similarity=-0.003 Sum_probs=114.2
Q ss_pred ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEE
Q psy5806 740 MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVL 819 (1332)
Q Consensus 740 ~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l 819 (1332)
.+.++++++.+..|..+. .++.|...+.........+...-..+..+++.+.++.|..... .+.|.+.+++.......
T Consensus 15 ~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~ 92 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEKVVD 92 (814)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCEEEE
T ss_pred ceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEE
Confidence 467788888766666554 4566777665443333333334456788999988887766654 67899999864433322
Q ss_pred EecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCC-cEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeE
Q psy5806 820 FWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTN-RAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTI 897 (1332)
Q Consensus 820 ~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~-~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I 897 (1332)
+.......+.++++|...+|+.... . ..|...+++... ....... -.....+++.+.. +.++.+-...+.|
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~--d----g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~v 165 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSD--D----LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD-PSTFASGCLDRTV 165 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEET--T----SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE-EEEEEEEETTSEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcC--C----CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC-CCEEEEEeCCCeE
Confidence 3333356889999998666665442 2 457776766542 2222222 3445678887733 3455555556788
Q ss_pred EEEccCCCce-eEEeccC-CcceEEEEe---CCEEEEEeCCCCEEEEEECCCC
Q psy5806 898 EYKTLATGRA-KRAYAVQ-SHPYTLTVL---DYYVYWTDVQHSKIYRANKYDV 945 (1332)
Q Consensus 898 ~~~~~dG~~~-~~l~~~~-~~P~~la~~---~~~iywtD~~~~~i~~~~~~~g 945 (1332)
...++.+... ..+.... .....+++. ++.++.+-..++.|...+..++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 8888764433 3332222 333455554 3344444445566666555554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.002 Score=82.33 Aligned_cols=201 Identities=9% Similarity=0.024 Sum_probs=121.3
Q ss_pred eEEEEEeCCCcEEEEEeC--------------------------------CCCeEEEEECCCCCCceeEee-cCCCCcee
Q psy5806 1047 SIFFDYHYSKNLIYFADM--------------------------------RSGNLRTFDMSDSTRIKPIPL-MNDTIRDN 1093 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~--------------------------------~~~~I~~~~l~~g~~~~~i~~-~~~~~p~g 1093 (1332)
+.++.|++.+++|+++.. ....|+.+++.++....+... .....+..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 468899999999998762 235688888774322211111 11124567
Q ss_pred eEEEecCCeEEEEcCCC----ceEEEEeeCCc-eEEEEe-c-CC---CCceEEEEcC--CCcEEEEEecCCCCCCCCCcE
Q psy5806 1094 FVIDWVANNIYYIDSQM----HTINVARSDGQ-HKKILV-N-DL---MEPLAIAVYP--RRGLLFYSHWGLYDNSPTTKI 1161 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~----~~I~v~~ldG~-~~~~~~-~-~~---~~P~~iavdp--~~g~Lywtd~~~~~~~~~~~I 1161 (1332)
+++.+.++.|+++.... ..|.++++++. ....+. . .. ....+++++| ...+||.++... ..+|
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-----~~~l 337 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-----WNHL 337 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS-----SCEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC-----ccEE
Confidence 88888888898864332 36778888754 433322 1 11 1235789998 665555554333 4689
Q ss_pred EEEecCCCceEEEEecCCCCcce-EEEecCCCEEEEEEcCCC----eEEEEecCCCceEEEEeecccceEEEecCCcccc
Q psy5806 1162 EKVYLDGSYRTVLVEEDLAFPNE-LAIDFKQRRLFWADSTNK----RIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAF 1236 (1332)
Q Consensus 1162 ~r~~ldG~~~~~l~~~~l~~p~g-laiD~~~~~LY~~d~~~~----~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~ 1236 (1332)
+.++++|.....+.. .-..... +++++++++||++....+ .|+++++++...+.+.......++++ +++
T Consensus 338 ~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-----spd 411 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQL-----SPD 411 (706)
T ss_dssp EEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEE-----CTT
T ss_pred EEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEE-----CCC
Confidence 999988876555533 2122334 789999999999987755 89999998765444333333445566 234
Q ss_pred ccEEEEEECC---CCEEEEEEecCC
Q psy5806 1237 IVELYWTDWE---AMSVVIAREKSD 1258 (1332)
Q Consensus 1237 ~~~lYwtd~~---~~~V~~~~~~~g 1258 (1332)
+.+|.++-.. ...|+..+..++
T Consensus 412 g~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 412 GSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp SSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCEEEEEecCCCCCcEEEEEECCCC
Confidence 4455544322 245666666554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.07 Score=60.92 Aligned_cols=214 Identities=7% Similarity=-0.045 Sum_probs=131.5
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCce
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~ 1092 (1332)
+|+....+..|+..++..... ...+.+ ...+.+++|++.++.|+.+. ..+.|...++.++.....+. ....+.
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~--~~~~v~ 119 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGER---LGTLDGHTGTIWSIDVDCFTKYCVTGS-ADYSIKLWDVSNGQCVATWK--SPVPVK 119 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEE-TTTEEEEEETTTCCEEEEEE--CSSCEE
T ss_pred EEEEEeCCCEEEEEeCCCchh---hhhhhhcCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEEEEee--cCCCeE
Confidence 444444333266666553321 222222 23467999999887776665 67899999987554433332 445688
Q ss_pred eeEEEecCCeEEEEcCC----CceEEEEeeCCce------------EEEEe--cCCCCceEEEEcCCCcEEEEEecCCCC
Q psy5806 1093 NFVIDWVANNIYYIDSQ----MHTINVARSDGQH------------KKILV--NDLMEPLAIAVYPRRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~----~~~I~v~~ldG~~------------~~~~~--~~~~~P~~iavdp~~g~Lywtd~~~~~ 1154 (1332)
.+++.+.++.|+.+... .+.|.++++.... ...+. .+......++++|...+|+.+...
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--- 196 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD--- 196 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT---
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC---
Confidence 99999888877766543 2688888886321 11111 122378899999965566555432
Q ss_pred CCCCCcEEEEecCC-CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCC
Q psy5806 1155 NSPTTKIEKVYLDG-SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSP 1232 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG-~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~ 1232 (1332)
+.|...++.. ......+...-.....++++++++.|+.+ ...+.|...|+.......... ......+++
T Consensus 197 ----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---- 267 (369)
T 3zwl_B 197 ----GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTLQVLKKYETDCPLNTAVI---- 267 (369)
T ss_dssp ----SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEE----
T ss_pred ----CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCCceeeeecCCCCceeEEe----
Confidence 5688888876 33333343334567789999888777766 466789999987554433333 445566666
Q ss_pred ccccccEEEEEECC
Q psy5806 1233 GKAFIVELYWTDWE 1246 (1332)
Q Consensus 1233 ~~~~~~~lYwtd~~ 1246 (1332)
.+.+.+|+.+...
T Consensus 268 -~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 268 -TPLKEFIILGGGQ 280 (369)
T ss_dssp -CSSSSEEEEEECC
T ss_pred -cCCCceEEEeecC
Confidence 3456666666543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0034 Score=73.34 Aligned_cols=182 Identities=9% Similarity=-0.042 Sum_probs=112.7
Q ss_pred CeEEEEECCCCCCceeEeecCCCCceeeEEEe-cCCeEEEEcCC-----CceEEEEeeCCceEEEEecCCC--CceEEEE
Q psy5806 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW-VANNIYYIDSQ-----MHTINVARSDGQHKKILVNDLM--EPLAIAV 1138 (1332)
Q Consensus 1067 ~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw-~~~~LY~td~~-----~~~I~v~~ldG~~~~~~~~~~~--~P~~iav 1138 (1332)
..|+.+++.+| ....+. ........+++.+ .++.|+++... ...|.+++++|.....+..... ....++.
T Consensus 168 ~~l~~~d~~~g-~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 168 CRLMRVDLKTG-ESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFW 245 (388)
T ss_dssp EEEEEEETTTC-CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEE
T ss_pred ceEEEEECCCC-ceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceE
Confidence 56888888744 333333 3334567889988 78888665433 3478888888776655443321 2456789
Q ss_pred cCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC-----CCcceEEEecCCCEEEEEE--------cCCCeEE
Q psy5806 1139 YPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL-----AFPNELAIDFKQRRLFWAD--------STNKRIE 1205 (1332)
Q Consensus 1139 dp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l-----~~p~glaiD~~~~~LY~~d--------~~~~~I~ 1205 (1332)
+|...+|+|+.... +.....|++.++++...+.+....- ..|.++++.+++++|+++- .....|.
T Consensus 246 spdg~~l~~~~~~~--~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 246 VPDGSALVYVSYLK--GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp CTTSSCEEEEEEET--TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred CCCCCEEEEEecCC--CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 99777676654322 0112249999998877665543211 1256678888888888763 4566899
Q ss_pred EEecCCCceEEEEe-ec-----------ccceEEEecCCccccccEEEEEEC--CCCEEEEEEecC
Q psy5806 1206 YCDFFGRSRKIVIS-KV-----------APYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKS 1257 (1332)
Q Consensus 1206 ~~d~dG~~~~~~~~-~~-----------~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~ 1257 (1332)
.+|+++...+.+.. .. ....+++ ++++.+||++.. ....|+++++..
T Consensus 324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 324 VFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSF-----TPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEE-----CTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred EEeccCCceEEeccccCcccccccccccCCCCccC-----CCCCCEEEEEecCCCceeEEEEECCh
Confidence 99998876555554 22 3455666 446778888764 344566666543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.038 Score=64.89 Aligned_cols=201 Identities=8% Similarity=-0.101 Sum_probs=131.4
Q ss_pred cceEEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCC------ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe
Q psy5806 1045 MSSIFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTR------IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR 1117 (1332)
Q Consensus 1045 ~~~~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~------~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ 1117 (1332)
..+.+++|++ .++.|+.. ...+.|...++..+.. ....+......+..|++.+.+++++++-...+.|.+++
T Consensus 82 ~~V~~~~~~p~~~~~l~s~-s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASG-SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 (402)
T ss_dssp SCEEEEEECTTCTTEEEEE-ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEE-eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence 3568999999 55555544 4788999999875531 12222233456788999987766777766778899999
Q ss_pred eCCce-EEEE--ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE-ecCC-CCcceEEEecCCC
Q psy5806 1118 SDGQH-KKIL--VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV-EEDL-AFPNELAIDFKQR 1192 (1332)
Q Consensus 1118 ldG~~-~~~~--~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~-~~~l-~~p~glaiD~~~~ 1192 (1332)
+.... ...+ .........|+++|...+|+.+.. . +.|...++........+ ...- ..+..+++.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-D------KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-T------SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-C------CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 97443 3335 333456789999995555555443 2 56888887655443333 2221 2367888887655
Q ss_pred EEEEEE--cCCCeEEEEecCCCce-EEEE--e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1193 RLFWAD--STNKRIEYCDFFGRSR-KIVI--S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1193 ~LY~~d--~~~~~I~~~d~dG~~~-~~~~--~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|+... ...+.|...|+..... ..+. . ...+..+++ ++.+.+||++-...+.|...+..++
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF-----DPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE-----ETTTTEEEEEETTCSCEEEEEECSS
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE-----cCCCCEEEEEEcCCCeEEEEEecCC
Confidence 444432 4678899999875432 2222 2 445667777 4457788888888899999998877
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.11 Score=60.80 Aligned_cols=226 Identities=11% Similarity=0.013 Sum_probs=142.5
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN 1093 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g 1093 (1332)
.+..+.... |+..++....... ......-..+..++|++.++.|+... ..+.|...++.++.....+. ........
T Consensus 106 l~~~~~d~~-v~lw~~~~~~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~ 181 (401)
T 4aez_A 106 VVAVALERN-VYVWNADSGSVSA-LAETDESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQTKLRTMA-GHQARVGC 181 (401)
T ss_dssp EEEEEETTE-EEEEETTTCCEEE-EEECCTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEEC-CCSSCEEE
T ss_pred EEEEECCCe-EEEeeCCCCcEeE-eeecCCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCeEEEEec-CCCCceEE
Confidence 344444444 7777765433211 11222234578999999888777765 67889999987543333332 22334555
Q ss_pred eEEEecCCeEEEEcCCCceEEEEeeC-Cce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1094 FVIDWVANNIYYIDSQMHTINVARSD-GQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~~~I~v~~ld-G~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
++++ ++.| ++-...+.|.++++. +.. ...+........+++++|...+|+.... . +.|...++.....
T Consensus 182 ~~~~--~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d------~~v~iwd~~~~~~ 251 (401)
T 4aez_A 182 LSWN--RHVL-SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN-D------NVVQIWDARSSIP 251 (401)
T ss_dssp EEEE--TTEE-EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-T------SCEEEEETTCSSE
T ss_pred EEEC--CCEE-EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-C------CeEEEccCCCCCc
Confidence 6554 5555 455556799999997 333 3335444467899999995555554443 2 4688888876555
Q ss_pred EEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEE-CCC
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTD-WEA 1247 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd-~~~ 1247 (1332)
...+...-.....+++.++++.|+.+-. ..+.|...|+........+. .....++++ .+.+.+|+.+. ...
T Consensus 252 ~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW-----SPHSKEIMSTHGFPD 326 (401)
T ss_dssp EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEE-----CSSSSEEEEEECTTT
T ss_pred cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEE-----CCCCCeEEEEeecCC
Confidence 4444434456788999998888888754 57889999987554433334 556778888 34456666653 367
Q ss_pred CEEEEEEecCC
Q psy5806 1248 MSVVIAREKSD 1258 (1332)
Q Consensus 1248 ~~V~~~~~~~g 1258 (1332)
+.|...+..++
T Consensus 327 g~i~v~~~~~~ 337 (401)
T 4aez_A 327 NNLSIWSYSSS 337 (401)
T ss_dssp CEEEEEEEETT
T ss_pred CcEEEEecCCc
Confidence 88988888775
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.079 Score=60.26 Aligned_cols=212 Identities=13% Similarity=0.037 Sum_probs=133.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~ 1124 (1332)
.+.++++.+....+. +-...+.|+..++.++.....+. ........+++.+.++.|. +....+.|.++++.. +...
T Consensus 82 ~v~~~~~~~~~~~l~-s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~-~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 82 GVVSVDISHTLPIAA-SSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLA-TGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp CEEEEEECSSSSEEE-EEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEE-EECTTSEEEEEETTTCSEEE
T ss_pred CEEEEEECCCCCEEE-EEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEE-EEcCCCcEEEEEcCCCceeE
Confidence 467888888776554 44478889999987554333332 3344567899998777665 445567899999874 4333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.+.........++++|...+|...... +.|...++........+...-.....|+++++++.|.-+ ...+.|
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~d-------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i 230 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAID-------GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYI 230 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCE
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeE
Confidence 354444567899999966555554432 467777776544433343333456789999887766654 567789
Q ss_pred EEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1205 EYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1205 ~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
...|+........+. ......|++ .+.+. +.++-...++|...+..++ .....+......+..+
T Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~-----sp~~~-~l~s~s~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 231 KIYDVQHANLAGTLSGHASWVLNVAF-----CPDDT-HFVSSSSDKSVKVWDVGTR---TCVHTFFDHQDQVWGV 296 (321)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEE-----CTTSS-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEE
T ss_pred EEEECCCcceeEEEcCCCCceEEEEE-----CCCCC-EEEEEeCCCcEEEEeCCCC---EEEEEEcCCCCcEEEE
Confidence 998987544333332 455677888 22334 4455557789999998777 5555544433334333
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.14 Score=59.70 Aligned_cols=320 Identities=9% Similarity=-0.025 Sum_probs=163.5
Q ss_pred CCccceeEecCCCeEEEEeCCCCeEEEEeC----CCCc------eEEEEec----------CCCCCeEEEEeCCCCeEEE
Q psy5806 782 NRTESIAVDAIGRKIYWTDMNAQTIMVSDI----DGKN------AKVLFWL----------NLYRPRSIVVHYGLGLMVW 841 (1332)
Q Consensus 782 ~~p~glAvD~~~~nLYwtD~~~~~I~v~~l----dG~~------~~~l~~~----------~~~~P~~Iavdp~~g~lyw 841 (1332)
..+..+++.+.++++..+-...+.|.+.++ .... ....+.. ......+|++.|...+|+.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 456788888877734445455678888888 5333 1222221 1125788999997555655
Q ss_pred EecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec-cCCc----
Q psy5806 842 ADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA-VQSH---- 916 (1332)
Q Consensus 842 td~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-~~~~---- 916 (1332)
.... ..|.....+|.....+...-.....+++...+ +.|+.+. ..+.|...++.......... ....
T Consensus 126 ~~~d------g~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 126 GVEN------GELRLWNKTGALLNVLNFHRAPIVSVKWNKDG-THIISMD-VENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp EETT------SCEEEEETTSCEEEEECCCCSCEEEEEECTTS-SEEEEEE-TTCCEEEEETTTTEEEEEECCC-------
T ss_pred EeCC------CeEEEEeCCCCeeeeccCCCccEEEEEECCCC-CEEEEEe-cCCeEEEEECCCCcEEEEeeccccCccce
Confidence 4432 35666666666555444334556688888877 6666655 45677777775433222211 1111
Q ss_pred -----------ceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCcccccc
Q psy5806 917 -----------PYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLR 985 (1332)
Q Consensus 917 -----------P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~ 985 (1332)
...+++..+..+.+-...+.|...+...++.+ . .+. . ..+....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~--------~-~~~-----~-------~~~~i~~~--- 253 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT--------G-KLI-----G-------HHGPISVL--- 253 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS--------E-EEC-----C-------CSSCEEEE---
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee--------e-eec-----c-------CCCceEEE---
Confidence 22233332222222222233332222111000 0 000 0 00000000
Q ss_pred CCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCCcEEEEEeC
Q psy5806 986 NPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSKNLIYFADM 1064 (1332)
Q Consensus 986 ~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~~~lY~sd~ 1064 (1332)
.+.. ...+|+....+..|+..++....... .+. ....+..++|.+.+ ++++-.
T Consensus 254 -------------~~~~--------~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~--~l~~~~ 307 (425)
T 1r5m_A 254 -------------EFND--------TNKLLLSASDDGTLRIWHGGNGNSQN---CFYGHSQSIVSASWVGDD--KVISCS 307 (425)
T ss_dssp -------------EEET--------TTTEEEEEETTSCEEEECSSSBSCSE---EECCCSSCEEEEEEETTT--EEEEEE
T ss_pred -------------EECC--------CCCEEEEEcCCCEEEEEECCCCccce---EecCCCccEEEEEECCCC--EEEEEe
Confidence 0111 12344444433326666655332221 112 22346789999877 445555
Q ss_pred CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce---------------------E
Q psy5806 1065 RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH---------------------K 1123 (1332)
Q Consensus 1065 ~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~---------------------~ 1123 (1332)
..+.|+..++.++.....+. .....+..+++.+.++.|+.+. ..+.|.++++.... .
T Consensus 308 ~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (425)
T 1r5m_A 308 MDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY 385 (425)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHHHHC--------------CEECCEE
T ss_pred CCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCccceeeeecccccccCcccchhh
Confidence 78899999987543333222 3345678899998777666554 45689999997433 2
Q ss_pred EEEecCCC--CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1124 KILVNDLM--EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1124 ~~~~~~~~--~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
..+..... .+..++++|...+|+.+... +.|...++.|
T Consensus 386 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~iw~~~g 425 (425)
T 1r5m_A 386 ASYQSSQDNDYIFDLSWNCAGNKISVAYSL-------QEGSVVAIPG 425 (425)
T ss_dssp EEECCTTCCCCEEEEEECTTSSEEEEEESS-------SCCEEEECCC
T ss_pred hhhcCcccCCceEEEEccCCCceEEEEecC-------ceEEEEeecC
Confidence 22433323 78899999976666655432 3455555554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0063 Score=71.53 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=139.4
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC---CCceeEeecCCCCceeeEEEecC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS---TRIKPIPLMNDTIRDNFVIDWVA 1100 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g---~~~~~i~~~~~~~p~glAvDw~~ 1100 (1332)
|+..++...........+..-..+..++|++.++.|+... ..+.|+..++... ......+......+..|++.+.+
T Consensus 47 v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 125 (416)
T 2pm9_A 47 LELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL-DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ 125 (416)
T ss_dssp CEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE-SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS
T ss_pred EEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc-cCCeEEEeecccccccccchhhccCCccceEEEEEcCCC
Confidence 5555655432211222223334578999999888776665 5778888887641 11222222234467889998774
Q ss_pred CeEEEEcCCCceEEEEeeCCce------EEE-E---ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1101 NNIYYIDSQMHTINVARSDGQH------KKI-L---VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1101 ~~LY~td~~~~~I~v~~ldG~~------~~~-~---~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
++++++-...+.|.++++.... ... + .........|+++|..+.++.+.... +.|...++....
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~ 199 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKK 199 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTE
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCC
Confidence 5566666667789999997543 111 2 22335678999999756666665433 568888887655
Q ss_pred eEEEEecC------CCCcceEEEecCCCEEEEEEcCCC---eEEEEecCCC--ceEEEE-e-ecccceEEEecCCccccc
Q psy5806 1171 RTVLVEED------LAFPNELAIDFKQRRLFWADSTNK---RIEYCDFFGR--SRKIVI-S-KVAPYGLSVRQSPGKAFI 1237 (1332)
Q Consensus 1171 ~~~l~~~~------l~~p~glaiD~~~~~LY~~d~~~~---~I~~~d~dG~--~~~~~~-~-~~~P~glav~~~~~~~~~ 1237 (1332)
....+... -.....+++.++++.++++-...+ .|...|+... ....+. . ...+.+|++ .+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~ 274 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW-----CHQD 274 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE-----CSSC
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe-----CCCC
Confidence 44444322 345778999988765665555665 8888888743 223332 2 445567777 2214
Q ss_pred cEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1238 VELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1238 ~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+.++++-...+.|...+..++ .....+.
T Consensus 275 ~~~l~s~~~dg~v~~wd~~~~---~~~~~~~ 302 (416)
T 2pm9_A 275 EHLLLSSGRDNTVLLWNPESA---EQLSQFP 302 (416)
T ss_dssp SSCEEEEESSSEEEEECSSSC---CEEEEEE
T ss_pred CCeEEEEeCCCCEEEeeCCCC---ccceeec
Confidence 445555556778888887766 4444444
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0097 Score=69.12 Aligned_cols=199 Identities=9% Similarity=-0.044 Sum_probs=129.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.+++|.+.++.|.... ..+.|+..++..+.....+ ......+..|++.+.++.++++....+.|.++++. ++...
T Consensus 141 ~V~~v~~spdg~~l~sgs-~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGG-KDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred CEEEEEECCCCCEEEEEe-CCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 467999999888776554 6788998897744322222 22344678899987777777877777889999886 33332
Q ss_pred EE--ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1125 IL--VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1125 ~~--~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+ ......+..|+++|..+.++.+-... ..|...++........+...-.....|++.++++++..+-...+
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred eeeeccccccccchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 22 12234578999999888777765433 46777777554443334333355678899888777666656678
Q ss_pred eEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1203 RIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
.|...|++......... .....+|++ .+.++.++.+-...++|...+..+
T Consensus 293 ~i~iwd~~~~~~~~~~~H~~~V~~vaf-----sP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 293 TVAVLDADFSEVFRDLSHRDFVTGVAW-----SPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEECTTSCEEEEECCCSSCEEEEEE-----CSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEEEEECCCCcEeEECCCCCCEEEEEE-----eCCCCCEEEEEcCCCeEEEEECCC
Confidence 89988887543222222 445677887 223455566666778888887644
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=5.7e-05 Score=61.50 Aligned_cols=41 Identities=34% Similarity=0.780 Sum_probs=35.9
Q ss_pred CCcccCC--------CCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 969 PNACGSN--------NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 969 ~n~C~~~--------nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.++|... ++.|+|.|.+++++|+|.|+.||.|..|+++|.+
T Consensus 4 idEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred cccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 4677654 4789999999999999999999999999999973
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0041 Score=72.66 Aligned_cols=200 Identities=8% Similarity=-0.082 Sum_probs=113.3
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCcee--e----------------EEEecCCeEEEEc---
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDN--F----------------VIDWVANNIYYID--- 1107 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~g--l----------------AvDw~~~~LY~td--- 1107 (1332)
+.+++.+++|+++.. .+.|+.+++.++. ...+..... ..|.| | ++.+.++.|++..
T Consensus 86 ~~~spdg~~l~~~~~-~~~l~~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 86 GFISTDERAFFYVKN-ELNLMKVDLETLE-EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CEECTTSSEEEEEET-TTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ceECCCCCEEEEEEc-CCcEEEEECCCCC-cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 567888888988763 4478888877433 333332111 12222 1 1122233333332
Q ss_pred -CCCceEEEEeeCCceEEEEecCCCCceEEEEcC-CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcce
Q psy5806 1108 -SQMHTINVARSDGQHKKILVNDLMEPLAIAVYP-RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNE 1184 (1332)
Q Consensus 1108 -~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp-~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~g 1184 (1332)
.....|.++++++.....+.........++++| ..++|+++..+.. .....+|+.++++|.....+.... ...+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPH-DLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCS-SSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCC-CCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 345578888887544444334445678899999 5666777653320 111257999999887755554421 123556
Q ss_pred EEEecCCCEEEEEEc--CCCe--EEEEecCCCceEEEEeecccceEEEecCCccc-cccEEEEEE---------------
Q psy5806 1185 LAIDFKQRRLFWADS--TNKR--IEYCDFFGRSRKIVISKVAPYGLSVRQSPGKA-FIVELYWTD--------------- 1244 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~--~~~~--I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~-~~~~lYwtd--------------- 1244 (1332)
+++.+++++|+++.. .... |...|+++...+.+..... ..++. .+ .+..|+.+.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~-----s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CSHLM-----SNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EEEEE-----ECSSSSEEEEEECCC----------CC
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CCCCc-----cCCCCceEEEecCCcceeecccccccc
Confidence 789999988877743 2334 9999997665544443111 11444 12 333444432
Q ss_pred CCCCEEEEEEecCC
Q psy5806 1245 WEAMSVVIAREKSD 1258 (1332)
Q Consensus 1245 ~~~~~V~~~~~~~g 1258 (1332)
.....|++++..++
T Consensus 317 ~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 317 ENDPFLYVLNTKAK 330 (396)
T ss_dssp CCCCEEEEEETTTT
T ss_pred CCCCcEEEEecccC
Confidence 13478888888776
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.019 Score=68.39 Aligned_cols=201 Identities=6% Similarity=0.015 Sum_probs=135.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce------eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK------PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~------~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
.+.+++|++.+..++++-...+.|...++..+.... .........+..+++.+.+++++++....+.|.++++.
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 457899998877455555578899999987533211 11212334578899987778888888888999999997
Q ss_pred Cc----eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC-CceEEEEecCCCCcceEEEecCCCEE
Q psy5806 1120 GQ----HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG-SYRTVLVEEDLAFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1120 G~----~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG-~~~~~l~~~~l~~p~glaiD~~~~~L 1194 (1332)
.. ....+......++.|+++|...+++.+.... +.|...++.. ......+...-.....|++.++++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 43 2333433445789999999777777776544 5688888765 33333333334567789999988888
Q ss_pred EEEEcCCCeEEEEecCCCc------------eEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1195 FWADSTNKRIEYCDFFGRS------------RKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1195 Y~~d~~~~~I~~~d~dG~~------------~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.+-...+.|...|+.... .+.+.. ...+..+++ .+.+.+++++-...+.|...+...
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-----NPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE-----CSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE-----CCCCCCEEEEEECCCCEEEeEccc
Confidence 8888888899998886411 122222 455788888 233444777777888887777643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.025 Score=65.77 Aligned_cols=198 Identities=10% Similarity=0.031 Sum_probs=129.8
Q ss_pred ceEEEEEeCCC-cEEEEEeCCCCeEEEEECCCCCCceeEee-cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSK-NLIYFADMRSGNLRTFDMSDSTRIKPIPL-MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~-~~lY~sd~~~~~I~~~~l~~g~~~~~i~~-~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+..++|++.+ +.|+.. ...+.|+..++.++.....+.. .....+.+|++.+..+++.++-...+.|.++++.+...
T Consensus 75 ~v~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVG-SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp CEEEEEECSSCTTEEEEE-EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred CEEEEEECCCCCCEEEEE-cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 46789999987 555554 4678899999875443333321 13346778888764445555555677999999998665
Q ss_pred EEEecCC---CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1124 KILVNDL---MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1124 ~~~~~~~---~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
..+.... .....++++|...+|+..... +.|...++.+.....+.. .-.....+++.++++.++++-..
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDST-------GRLLLLGLDGHEIFKEKL-HKAKVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTTEEEEEETT-------SEEEEEETTSCEEEEEEC-SSSCEEEEEECSSCTTEEEEEET
T ss_pred EEEeccCCCCCCeEEEEECCCCCEEEEECCC-------CCEEEEECCCCEEEEecc-CCCcEEEEEECCCCCCEEEEEeC
Confidence 5543322 457899999966666555432 578888887765544433 34667889999888745556567
Q ss_pred CCeEEEEecCC-C---ceEEEEe-ecccceEEEecCCccc-cccEEEEEECCCCEEEEEEecCC
Q psy5806 1201 NKRIEYCDFFG-R---SRKIVIS-KVAPYGLSVRQSPGKA-FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1201 ~~~I~~~d~dG-~---~~~~~~~-~~~P~glav~~~~~~~-~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|...|+.. . ....... .....+|++ .+ .+.+|+ +-...+.|...+..++
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~~l~-~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF-----NPTDSTKLL-TTDQRNEIRVYSSYDW 283 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEE-----CTTTSCEEE-EEESSSEEEEEETTBT
T ss_pred CCEEEEEeCCCCCcccceEEEecCCCceEEEEE-----cCCCCCEEE-EEcCCCcEEEEECCCC
Confidence 78999999863 2 1111123 556678888 33 334444 4456789999998877
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0059 Score=77.26 Aligned_cols=164 Identities=9% Similarity=0.049 Sum_probs=106.2
Q ss_pred CCCcE-EEEEeCCCCeEEEEECCC-C-CCceeEeec----CCCCceeeEEEecCCeEEEEcCC---------CceEEEEe
Q psy5806 1054 YSKNL-IYFADMRSGNLRTFDMSD-S-TRIKPIPLM----NDTIRDNFVIDWVANNIYYIDSQ---------MHTINVAR 1117 (1332)
Q Consensus 1054 ~~~~~-lY~sd~~~~~I~~~~l~~-g-~~~~~i~~~----~~~~p~glAvDw~~~~LY~td~~---------~~~I~v~~ 1117 (1332)
|.+++ |+++......|+.++++. | .....+... ....+.++++++.++.|+++... ...|.+++
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 67777 888876677888888640 1 222232211 12356788999999999887543 25788899
Q ss_pred eCC------ceEEEEe-cCCCCceEEEEcCCCcEEEEEecCCCCC-CCCCcEEEEecCC-C---ceEEEEecCCCCcceE
Q psy5806 1118 SDG------QHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDN-SPTTKIEKVYLDG-S---YRTVLVEEDLAFPNEL 1185 (1332)
Q Consensus 1118 ldG------~~~~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~-~~~~~I~r~~ldG-~---~~~~l~~~~l~~p~gl 1185 (1332)
+++ ...+.+. .+.....+++++|...+|+|+.+..... -....|+..++++ . ....+....-..+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 988 5555554 4445567789999888899987543000 0125799999984 3 3344443223566778
Q ss_pred EEecCCCEEEEEEcCCC--eEEEEecCCCceEEEE
Q psy5806 1186 AIDFKQRRLFWADSTNK--RIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1186 aiD~~~~~LY~~d~~~~--~I~~~d~dG~~~~~~~ 1218 (1332)
++.++++ ||++....+ +|+++++++...+.+.
T Consensus 248 ~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 248 EWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp EECTTSC-EEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred EECCCCe-EEEEECCCCCeEEEEEECCCCceeecc
Confidence 8988888 666654445 8999998665544443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.97 Score=58.26 Aligned_cols=465 Identities=8% Similarity=0.006 Sum_probs=225.2
Q ss_pred CccceEeeccceeEEEecCCCCCcceeeec-----c--cccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEe
Q psy5806 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPL-----R--QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV 778 (1332)
Q Consensus 706 ~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~-----~--~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~ 778 (1332)
..-||.+++...|.+.+-.. . ..... . .-..+.+|..|.. +.|++... +.+.+.+........+..
T Consensus 52 ~~G~lWigT~~GL~ryDG~~--f--~~~~~~~~~~~~l~~n~I~~i~~d~~-g~lWigT~--~Gl~~yd~~~~~f~~~~~ 124 (795)
T 4a2l_A 52 KRGNMWFATYDGVNKYDGYA--F--TVYQHNEDDPNSIANDISRIVKTDSQ-GRVWIGTR--DGLSRYDEEKDIFQNFFY 124 (795)
T ss_dssp TTSCEEEEETTEEEEECSSC--E--EEECCCTTCTTSCSCSCEEEEEECTT-SCEEEEES--SCEEEEETTTTEEEEECC
T ss_pred CCCCEEEeecCcCcccCCCc--e--EEEeCCCCCCCcccccceeEEEECCC-CCEEEEeC--CchheeCCCCCeEEeccc
Confidence 44567777777776654321 0 01100 0 1134566766754 67777643 347777654322222211
Q ss_pred CCC---CCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCC--CC-CeEEEEeCCCCeEEEEecccCcCCCC
Q psy5806 779 NDL---NRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL--YR-PRSIVVHYGLGLMVWADWSRTRLTNN 852 (1332)
Q Consensus 779 ~~~---~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~--~~-P~~Iavdp~~g~lywtd~g~~~~~~~ 852 (1332)
... ..+..|+.|. .++||+... +.|.+.+........+ ...+ .. ...|..|+. |.|++...+.
T Consensus 125 ~~~~~~~~i~~i~~d~-~g~lwi~t~--~gl~~~~~~~~~~~~~-~~~~~~~~~i~~i~~d~~-g~lwigt~~~------ 193 (795)
T 4a2l_A 125 EKNGKHLQVNGIEEIS-PEQLLISTP--EGLIMFDIKESKFIDD-SFSTAMHKTIASTLYRQG-DQIYIGTSTD------ 193 (795)
T ss_dssp EETTEECCCCEEEEEE-TTEEEEEET--TEEEEEETTTTEEECS-SSCHHHHTCCEEEEEEET-TEEEEEESSS------
T ss_pred cccCCCceEEEEEECC-CCCEEEEEC--CceEEEECCCCEEEec-cCCCCCCcceEEEEECCC-CCEEEEECCC------
Confidence 000 1166788884 455777654 4576666543221111 1111 12 678888865 7877754321
Q ss_pred ceEEEecCCCCcEEEecc--cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEecc------C--CcceEEEE
Q psy5806 853 RIEMAHMDGTNRAVFETE--VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAV------Q--SHPYTLTV 922 (1332)
Q Consensus 853 ~I~r~~~dG~~~~~l~~~--l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~------~--~~P~~la~ 922 (1332)
.|.+..........+... ......|..|..+ +|+++.. .+-|...+......+.+... + ....+|..
T Consensus 194 Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g--~lwigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 270 (795)
T 4a2l_A 194 GLYTYSITQKTFEKVIPILGTKQIQAILQQSPT--RIWVATE-GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM 270 (795)
T ss_dssp CEEEEETTTCCEEECC----CCCEEEEEEEETT--EEEEEEB-SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE
T ss_pred CEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC--CEEEEEC-CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE
Confidence 366666544332222111 2234467777755 5555442 23466776655444333221 1 22456666
Q ss_pred eCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEcc
Q psy5806 923 LDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002 (1332)
Q Consensus 923 ~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~ 1002 (1332)
+.+-..|.-... .|.+.++.+++... +.. .+. ++=...+ ..- +.+..
T Consensus 271 d~~g~lWigt~~-Gl~~~~~~~~~~~~----------~~~-~~~---~~~~l~~-----------~~i-------~~i~~ 317 (795)
T 4a2l_A 271 DSQNRLWIGTFN-DLNIYHEGTDSFAS----------YSS-NPV---ENGSLSQ-----------RSV-------RSIFM 317 (795)
T ss_dssp CTTSCEEEEESS-CEEEEETTTTEEEE----------ECC-CTT---STTSCSS-----------SCE-------EEEEE
T ss_pred cCCCCEEEEeCC-hhheEcCCCCeEEE----------Eec-CCC---CCCCCCC-----------CcE-------EEEEE
Confidence 633334433233 46666665542111 100 000 0000000 000 01111
Q ss_pred CCccccccCcceEEEEee-cceEEEEeCCCCCCCCcc-cc-cCC--ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC
Q psy5806 1003 DRRSCFSRTREFLLYTSR-FGVIRRISLDTADLLPVT-LP-FPE--YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS 1077 (1332)
Q Consensus 1003 d~~tC~~~p~~~ll~~~~-~~~i~~i~l~~~~~~~~~-~p-i~~--~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g 1077 (1332)
| ++..|-+.+. .. |..++.......... .+ -.+ ...+.+|..|.. +.||+.. ..+-|.+++...+
T Consensus 318 D-------~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~-g~lWiGt-~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 318 D-------SQGGMWLGTYFGG-LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD-KNLWIGT-NDGGLNLYNPITQ 387 (795)
T ss_dssp C-------TTSCEEEEESSSC-EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT-SCEEEEE-SSSCEEEECTTTC
T ss_pred e-------CCcCEEEEECCCC-eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC-CCEEEEE-CCCCeEEEcCCCC
Confidence 1 1122323332 33 444433211100000 00 011 224678877865 4577664 4445888775422
Q ss_pred CCceeEeec--------CCCCceeeEEEecCCe-EEEEcCCCceEEEEeeCCceEEEEec-----CCCCceEEEEcCCCc
Q psy5806 1078 TRIKPIPLM--------NDTIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQHKKILVN-----DLMEPLAIAVYPRRG 1143 (1332)
Q Consensus 1078 ~~~~~i~~~--------~~~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~~~~~~~-----~~~~P~~iavdp~~g 1143 (1332)
. ...+... ....+..|+.|. .++ ||+... .+.|.+++.+....+.+.. ....+++|+.|+ .|
T Consensus 388 ~-~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g 463 (795)
T 4a2l_A 388 R-FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EG 463 (795)
T ss_dssp C-EEEECCC------CCSCSCEEEEEEET-TTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SS
T ss_pred c-EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CC
Confidence 2 1122111 123567888884 456 776644 3467777776433333321 124578999998 78
Q ss_pred EEEEEecCCCCCCCCCcEEEEecCCCceEEEEec----CC--CCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEE
Q psy5806 1144 LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----DL--AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV 1217 (1332)
Q Consensus 1144 ~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----~l--~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~ 1217 (1332)
.|+++..++ |.+.+......+.+... .+ .....|..| ..++||++.. +-|.+++.++... .+
T Consensus 464 ~lwigt~~G--------l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~~ 531 (795)
T 4a2l_A 464 NLWLGTLSA--------LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-QK 531 (795)
T ss_dssp CEEEEESSC--------EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC-TTCCEEEEES--SCEEEEEEETTEE-EE
T ss_pred CEEEEecCc--------eeEEeCCCCeEEEccccccccccCCceEEEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-EE
Confidence 888876543 88888765443333221 11 345677788 4567888765 4588888765433 22
Q ss_pred E---e-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1218 I---S-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1218 ~---~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
. . .....+|.. +.++.||++... .|+++++.++
T Consensus 532 ~~~~~~~~l~~~~i~~i~~------d~~g~lWigT~~--Gl~~~d~~~~ 572 (795)
T 4a2l_A 532 ASILPVSNVTKLFTNCIYE------ASNGIIWVGTRE--GFYCFNEKDK 572 (795)
T ss_dssp CCCSCSCGGGGSCEEEEEE------CTTSCEEEEESS--CEEEEETTTT
T ss_pred ecCCCCCCCCCCeeEEEEE------CCCCCEEEEeCC--CceeECCCCC
Confidence 1 1 223456666 456778877653 6888886554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.25 E-value=0.024 Score=67.48 Aligned_cols=201 Identities=12% Similarity=-0.021 Sum_probs=135.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC---------CCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS---------TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g---------~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
.+..++|.+.++.++.+-...+.|+..++... ......+......+.+|++++.+..+.++....+.|.++
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 35678889876667777667888998887631 111112222334567888887777466777777899999
Q ss_pred eeCCce--------EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC---ceEEEEecCCCCcceE
Q psy5806 1117 RSDGQH--------KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS---YRTVLVEEDLAFPNEL 1185 (1332)
Q Consensus 1117 ~ldG~~--------~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~---~~~~l~~~~l~~p~gl 1185 (1332)
++.... ...+..-...+..|+++|..+.++.+.... +.|...++... .....+...-..++.|
T Consensus 210 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp ETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred eCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 997511 112223334688999999778888887554 67888887654 2222333334567889
Q ss_pred EEecCCCEEEEEEcCCCeEEEEecCC-Cc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1186 AIDFKQRRLFWADSTNKRIEYCDFFG-RS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1186 aiD~~~~~LY~~d~~~~~I~~~d~dG-~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
++.+.++.++++-...+.|...|+.. .. ...+.. .....+|++ .+.+.+++.+-...+.|...+...
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~-----sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-----SPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE-----CSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE-----CCCCCCEEEEEeCCCcEEEEeCCC
Confidence 99988888888877889999999975 32 233332 556677888 334557888888888999888766
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.24 Score=57.34 Aligned_cols=188 Identities=11% Similarity=-0.037 Sum_probs=118.7
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCccccc-CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC--CC
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPF-PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN--DT 1089 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi-~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~--~~ 1089 (1332)
.+|+....+..|+..++....... .... .....+.+++|.+.++.++++-...+.|...++. +.....+.... ..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~ 164 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GSVIQVFAKTDSWDY 164 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SCEEEEEECCCCSSC
T ss_pred CEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CCceEEEeccCCCCC
Confidence 355555444327777776443221 1121 2334578999999555555555578899999987 43333333211 13
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC-
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG- 1168 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG- 1168 (1332)
.+..+++.+.++.|+.+. ..+.|.+++++++....+..-.....+|+++|....++.+-... +.|...++..
T Consensus 165 ~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~ 237 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGD-STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD------ATVKLWDLRNI 237 (383)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT------SEEEEEEGGGC
T ss_pred CeEEEEECCCCCEEEEEC-CCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC------CEEEEEeCCCC
Confidence 578899998777776554 45799999998877666655556789999999766355554333 4577667653
Q ss_pred ---CceEEEEecCCCCcceEEEec-CCCEEEEEEcCCCeEEEEecCC
Q psy5806 1169 ---SYRTVLVEEDLAFPNELAIDF-KQRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1169 ---~~~~~l~~~~l~~p~glaiD~-~~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
........ .-.....+++++ +++.|+.+ ...+.|...|+..
T Consensus 238 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 238 KDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYD 282 (383)
T ss_dssp CSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTB
T ss_pred CcccceEEEec-CCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCC
Confidence 22222222 345677899998 76666655 4678999999863
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.23 E-value=1 Score=57.94 Aligned_cols=189 Identities=10% Similarity=0.004 Sum_probs=111.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee--cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-e
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL--MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-H 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~--~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~ 1122 (1332)
.+.+|..|.. +.||+.. ..+-|.+++..++ ..+.+.. .....+..|+.|. .++||++.. +.|.+++.+.. .
T Consensus 408 ~v~~i~~d~~-g~lWigt-~~~Gl~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSE-GNLWFGT-YLGNISYYNTRLK-KFQIIELEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTT-SCEEEEE-TTEEEEEECSSSC-EEEECCSTTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESSSSSC
T ss_pred ceEEEEECCC-CCEEEEe-ccCCEEEEcCCCC-cEEEeccCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCCCCeE
Confidence 4678877755 4577654 4456888874422 1111111 1223567888884 677877765 46777777643 3
Q ss_pred EEEEecC-----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-CC--CCcceEEEecCCCEE
Q psy5806 1123 KKILVND-----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-DL--AFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1123 ~~~~~~~-----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-~l--~~p~glaiD~~~~~L 1194 (1332)
....... ...+++|+.|+ .|.|+++..+. -|.+.+.++...+.+... ++ .....|..|. .++|
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~-------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l 552 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGG-------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQM 552 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECT-TCCEEEEESSS-------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-TSCE
T ss_pred EecccCcccccccceeEEEEEcC-CCCEEEEEcCC-------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCCE
Confidence 2222111 24678999998 78888876532 388888776554433221 12 2345677774 5678
Q ss_pred EEEEcCCCeEEEEecCCCceEEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1195 FWADSTNKRIEYCDFFGRSRKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1195 Y~~d~~~~~I~~~d~dG~~~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|++.. .+-|.++|.....-+.+-. .....+|+. +.++.||++- .+.|.++++.++
T Consensus 553 Wi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~------d~~g~lW~~t--~~Gl~~~~~~~~ 612 (781)
T 3v9f_A 553 WLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISE------DKNGNIWAST--NTGISCYITSKK 612 (781)
T ss_dssp EEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEE------CSSSCEEEEC--SSCEEEEETTTT
T ss_pred EEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEE------CCCCCEEEEc--CCceEEEECCCC
Confidence 77765 4444887776544333322 234567877 4577888875 345777776544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.11 Score=62.18 Aligned_cols=197 Identities=10% Similarity=-0.057 Sum_probs=125.0
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce-e--EeecCCCCceeeEEEec---CCeEEEEcCCCceEEEEee
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK-P--IPLMNDTIRDNFVIDWV---ANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~-~--i~~~~~~~p~glAvDw~---~~~LY~td~~~~~I~v~~l 1118 (1332)
..+.+++|++.++.|+.++ ..+.|+.+++.++.... . .+......+..|++.+. ++.|+ +-...+.|.++++
T Consensus 150 ~~v~~~~~sp~~~~l~~~~-~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIAD-KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHY 227 (450)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEe-CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEEC
Confidence 3467999999999888887 57889999987554332 0 11123456788999986 44554 4445678999999
Q ss_pred C-CceEEEEe-cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-------------------
Q psy5806 1119 D-GQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE------------------- 1177 (1332)
Q Consensus 1119 d-G~~~~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~------------------- 1177 (1332)
. +.....+. .-...+..|+++ ...+|+... .. ..|...++........+..
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred CCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CC------CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 7 44444432 333567899998 455555443 32 5677777765443333321
Q ss_pred ------CCCCcceEEEecCCCEEEEEEcCCCeEEEEec--CCC-ceEEEEe---ecccceEEEecCCccccccEEEEEEC
Q psy5806 1178 ------DLAFPNELAIDFKQRRLFWADSTNKRIEYCDF--FGR-SRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1178 ------~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~--dG~-~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
.-....+|++.++++.||.+....+.|...++ ... ..+.+.. ...+.++++ ..+.+|++-.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~-------~~~~~~v~~~ 372 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSA-------HNDEFQVTLD 372 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEE-------ETTEEEEEEC
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEe-------cCCcEEEEEe
Confidence 01235578888889999998767888998888 322 2222222 466788999 4455666643
Q ss_pred CC-------C--EEEEEEecCC
Q psy5806 1246 EA-------M--SVVIAREKSD 1258 (1332)
Q Consensus 1246 ~~-------~--~V~~~~~~~g 1258 (1332)
.. + .|+.++..++
T Consensus 373 ~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 373 NKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp CTTCCSSCCCSEEEEEEETTTT
T ss_pred cccCCCCCCcceEEEEEEcCCC
Confidence 32 1 6777776555
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0057 Score=76.15 Aligned_cols=193 Identities=8% Similarity=-0.020 Sum_probs=119.8
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--C--CceEEEEee--CC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--Q--MHTINVARS--DG 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~--~~~I~v~~l--dG 1120 (1332)
+.++++++++++|.++....+++....++ +.....+..........+++.+. +.||+++. . ...|..+++ +|
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEc-CCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 57889999999999877556665555554 43333333222123455555544 67888875 2 235666777 77
Q ss_pred ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1121 QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1121 ~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
.... + .........++.|....++++.... ..+...++++...+.+.... . ..+++++++++|+++...
T Consensus 102 ~~~~-l-~~~~~~~~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 102 EEQR-L-EAVKPMRILSGVDTGEAVVFTGATE------DRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp CCEE-C-TTSCSBEEEEEEECSSCEEEEEECS------SCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEE
T ss_pred cccc-c-cCCCCceeeeeCCCCCeEEEEecCC------CCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEc
Confidence 6553 2 2233455667777655555554332 22335577776666665432 2 688999999999976433
Q ss_pred ---CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1201 ---NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1201 ---~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
...|...|+++...+.+.. .....+++. ++++.+||.++ ..+ .|++++..++
T Consensus 171 ~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~-----SpDG~~l~~~~-~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASI-----SPGMKVTAGLE-TAREARLVTVDPRDG 228 (582)
T ss_dssp ETTEEEEEEEETTTCCCEEECCSSCEEEEEEE-----CTTSCEEEEEE-CSSCEEEEEECTTTC
T ss_pred CCCCeEEEEEcCCCCCceEeecCCCccccceE-----CCCCCEEEEcc-CCCeeEEEEEcCCCC
Confidence 2569999998766655554 444567777 45677788554 444 8999998776
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0049 Score=76.75 Aligned_cols=191 Identities=9% Similarity=-0.077 Sum_probs=120.8
Q ss_pred ceEEEEEeCCCcEEEEEeC--C--CCeEEEEEC--CCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1046 SSIFFDYHYSKNLIYFADM--R--SGNLRTFDM--SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~--~--~~~I~~~~l--~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
.+.+++|++. +.||+++. . ...|+.+++ . |... .+ ........+++.+.++.++++....+.+.+++++
T Consensus 66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~-g~~~-~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP-GEEQ-RL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST-TCCE-EC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC-Cccc-cc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 3557778877 78888885 1 226777886 4 3333 22 2222344567777788776665555555688998
Q ss_pred CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1120 GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1120 G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
+...+.+..... .+++++|...+|+++.... .....|++.++++...+.|.. .......+++.++++.||.++.
T Consensus 141 ~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~---~~~~~i~~~d~~~g~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~ 214 (582)
T 3o4h_A 141 GGGLRELARLPG--FGFVSDIRGDLIAGLGFFG---GGRVSLFTSNLSSGGLRVFDS-GEGSFSSASISPGMKVTAGLET 214 (582)
T ss_dssp TTEEEEEEEESS--CEEEEEEETTEEEEEEEEE---TTEEEEEEEETTTCCCEEECC-SSCEEEEEEECTTSCEEEEEEC
T ss_pred CCcEEEeecCCC--ceEEECCCCCEEEEEEEcC---CCCeEEEEEcCCCCCceEeec-CCCccccceECCCCCEEEEccC
Confidence 665544433222 8899999888888775432 112569999998777766543 3345578999999999995554
Q ss_pred CCC--eEEEEecCCCceEEEEe--ecccceEE--------EecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1200 TNK--RIEYCDFFGRSRKIVIS--KVAPYGLS--------VRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1200 ~~~--~I~~~d~dG~~~~~~~~--~~~P~gla--------v~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
.+ .|...|+++...+ +.. ...+.+++ + ++++ .||++-...+++...+.
T Consensus 215 -~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 215 -AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY-----LPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp -SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE-----CTTS-CEEEEEEETTEEEEEET
T ss_pred -CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE-----cCCC-cEEEEEEcCCcEEEEEE
Confidence 44 8999999987766 443 23333344 5 2233 66666655566555543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.18 E-value=1.1 Score=57.54 Aligned_cols=432 Identities=9% Similarity=-0.010 Sum_probs=212.6
Q ss_pred ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEe-----CC--CCCccceeEecCCCeEEEEeCCCCeEEEEeCC
Q psy5806 740 MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV-----ND--LNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812 (1332)
Q Consensus 740 ~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~-----~~--~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld 812 (1332)
.+.++..|. .+.||+.... +.|.+++......+.+.. .. -..+..|..|.. ++||+.... .+.+.+..
T Consensus 164 ~i~~i~~d~-~g~lwigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~lwigt~~--Gl~~~d~~ 238 (781)
T 3v9f_A 164 QTWTATEAE-DGKLYIGHVE-GGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTN-GNIWIGTSK--GLALFNAN 238 (781)
T ss_dssp CEEEEEEEE-TTEEEEEETT-TEEEEEETTTTEEEEECC--------CCSSEEEEEECTT-CCEEEEETT--EEEEEETT
T ss_pred ceEEEEECC-CCCEEEEecC-CCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCC-CCEEEEeCC--cHheECCC
Confidence 355666664 3677765433 347777665433322210 01 134667888854 457766543 57777664
Q ss_pred CCceEEEEec-------CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEec-------------cc-
Q psy5806 813 GKNAKVLFWL-------NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET-------------EV- 871 (1332)
Q Consensus 813 G~~~~~l~~~-------~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~-------------~l- 871 (1332)
......+... .....++|+.|+. |.|++...+. -|.+.+.+......+.. .+
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~-g~lWigt~~~------Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~ 311 (781)
T 3v9f_A 239 TETFTNFHNNPGNIHGALSSYIFSIKQLKD-NKLWIATELN------GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLS 311 (781)
T ss_dssp TTEEEC-----------CCCCEEEEEECTT-SEEEEEESSS------CEEEEETTCC---------CEEECBCSSTTSBS
T ss_pred CCcEEEEEcCCCccccccCceEEEEEECCC-CCEEEEeCCC------CeEEECCCCCeeeeeeccccccccCCCCCCCCC
Confidence 3322221110 1234678888865 7777665422 25555554432221111 11
Q ss_pred -ccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe--------ccC--CcceEEEEeC-CEEEEEeCCCCEEEE
Q psy5806 872 -IWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--------AVQ--SHPYTLTVLD-YYVYWTDVQHSKIYR 939 (1332)
Q Consensus 872 -~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~--------~~~--~~P~~la~~~-~~iywtD~~~~~i~~ 939 (1332)
.....|..|..+ .| |+-...+-|..++......+.+. ..+ ....+++.+. +.||.. ...+.|.+
T Consensus 312 ~~~v~~i~~D~~g--~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFN--NI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG-TDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSC--CE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE-EBSSCEEE
T ss_pred CCeEEEEEEeCCC--CE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEE-eCCCcEEE
Confidence 123467888766 55 44333455666666654444332 111 2345666664 444443 33344666
Q ss_pred EECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEe
Q psy5806 940 ANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTS 1019 (1332)
Q Consensus 940 ~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~ 1019 (1332)
.++.+++.. .+. .+.. . +... =+.+..| +...|.+.+
T Consensus 388 ~~~~~~~~~----------~~~--~~~~------~------------~~~~------v~~i~~d-------~~g~lWigt 424 (781)
T 3v9f_A 388 FENGKRVAI----------YNK--ENRE------L------------LSNS------VLCSLKD-------SEGNLWFGT 424 (781)
T ss_dssp EETTEEEEE----------CC-------------C------------CCSB------EEEEEEC-------TTSCEEEEE
T ss_pred EECCCCeEE----------Ecc--CCCC------C------------CCcc------eEEEEEC-------CCCCEEEEe
Confidence 554432100 000 0000 0 0000 0011111 122343444
Q ss_pred e-cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-----CCCcee
Q psy5806 1020 R-FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-----DTIRDN 1093 (1332)
Q Consensus 1020 ~-~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-----~~~p~g 1093 (1332)
. .. +.+++...........+......+.+|..|.. +.||+... +-|.+++..++.- ..+.... ...+.+
T Consensus 425 ~~~G-l~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g~lwigt~--~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 425 YLGN-ISYYNTRLKKFQIIELEKNELLDVRVFYEDKN-KKIWIGTH--AGVFVIDLASKKV-IHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp TTEE-EEEECSSSCEEEECCSTTTCCCCEEEEEECTT-SEEEEEET--TEEEEEESSSSSC-CEEECTTTSSCSCSCEEE
T ss_pred ccCC-EEEEcCCCCcEEEeccCCCCCCeEEEEEECCC-CCEEEEEC--CceEEEeCCCCeE-EecccCcccccccceeEE
Confidence 3 34 55444332111100000011234667777754 56877754 5688888663322 2222111 235778
Q ss_pred eEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec--CC--CCceEEEEcCCCcEEEEEecCCCCCCCCCcE-EEEecCC
Q psy5806 1094 FVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN--DL--MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKI-EKVYLDG 1168 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~--~~--~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I-~r~~ldG 1168 (1332)
|+.|. .++|+++.... .+.+++.++...+.+.. ++ ....+|+.|+ +|.|+++...+ | .+.+...
T Consensus 500 i~~d~-~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T~~G--------lv~~~d~~~ 568 (781)
T 3v9f_A 500 IAQDS-EGRFWIGTFGG-GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQMWLATGEG--------LVCFPSARN 568 (781)
T ss_dssp EEECT-TCCEEEEESSS-CEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-TSCEEEEETTE--------EEEESCTTT
T ss_pred EEEcC-CCCEEEEEcCC-CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCCEEEEECCC--------ceEEECCCC
Confidence 99994 67787776533 46666666544333321 22 3467899998 78888776533 5 7777655
Q ss_pred CceEEEEe-cCC--CCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe----ecc---cceEEEecCCcccccc
Q psy5806 1169 SYRTVLVE-EDL--AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----KVA---PYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1169 ~~~~~l~~-~~l--~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~---P~glav~~~~~~~~~~ 1238 (1332)
...+.+-. .++ ....+|+.|. +++||++. .+-|.+++.+....+.+-. ... +.++.. +.+|
T Consensus 569 ~~~~~~~~~~gl~~~~i~~i~~d~-~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~------~~~G 639 (781)
T 3v9f_A 569 FDYQVFQRKEGLPNTHIRAISEDK-NGNIWAST--NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTK------DHNG 639 (781)
T ss_dssp CCCEEECGGGTCSCCCCCEEEECS-SSCEEEEC--SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEE------CTTS
T ss_pred CcEEEccccCCCCCceEEEEEECC-CCCEEEEc--CCceEEEECCCCceEEecccCCccccccccCceEE------CCCC
Confidence 44433321 112 2355888884 56788774 3458888887544333322 111 235555 3578
Q ss_pred EEEEEECCCCEEEEEEecC
Q psy5806 1239 ELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~ 1257 (1332)
.||+.-. +.+.++++..
T Consensus 640 ~l~~g~~--~Gl~~f~p~~ 656 (781)
T 3v9f_A 640 LIYFGSI--NGLCFFNPDI 656 (781)
T ss_dssp CEEEEET--TEEEEECSCC
T ss_pred EEEEECC--CceEEEChhh
Confidence 8999865 4677777643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.099 Score=61.32 Aligned_cols=198 Identities=9% Similarity=-0.017 Sum_probs=130.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+..++++. + ++++-...+.|...++..............+.+.++++.+.++.|+.+ ...+.|.++++... ...
T Consensus 178 ~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 178 RVGCLSWNR--H-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG-GNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp CEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTCSSEEE
T ss_pred ceEEEEECC--C-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE-eCCCeEEEccCCCCCccE
Confidence 456777853 3 444445788999999874333333333345577889998755555544 45678999999844 344
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc-CCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS-TNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~-~~~~ 1203 (1332)
.+........+|+++|....|+.+..+. ..+.|...++........+... .....+++.++++.|+.+.. ..+.
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs----~d~~i~i~d~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCT----TTCEEEEEETTTCCEEEEEECS-SCEEEEEECSSSSEEEEEECTTTCE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCC----CCCEEEEEECCCCCEEEEEeCC-CcEEEEEECCCCCeEEEEeecCCCc
Confidence 4544446689999999877888876432 1367888888765555445433 56788999998888887743 5788
Q ss_pred EEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1204 IEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|...++.......+.. .....++++ .+.+. +.++-...+.|...+..++
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~-----s~dg~-~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSAL-----SPDGR-ILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEE-----CTTSS-EEEEECTTSEEEEEECCC-
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEE-----CCCCC-EEEEEeCCCcEEEEECCCC
Confidence 9999987643333322 455677888 22344 4445557789999998777
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.021 Score=67.02 Aligned_cols=237 Identities=7% Similarity=-0.026 Sum_probs=140.6
Q ss_pred eEEEEeecceEEEEeCCCCCCC-CcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC------CceeE--
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLL-PVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST------RIKPI-- 1083 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~-~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~------~~~~i-- 1083 (1332)
+|+....+..|+..++...... .....+.+ ...+..++|++.++.++++-...+.|+..++..+. ....+
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 4444443322666666542111 12222222 23467899999844455555578889998887543 11111
Q ss_pred eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEecC------CCCceEEEEcCCCcEEEEEecCCCCCC
Q psy5806 1084 PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILVND------LMEPLAIAVYPRRGLLFYSHWGLYDNS 1156 (1332)
Q Consensus 1084 ~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~~------~~~P~~iavdp~~g~Lywtd~~~~~~~ 1156 (1332)
.......+..|++.+.+++++++-...+.|.++++..... ..+... ...+..++++|....++++.... .
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~ 237 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS---D 237 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC---S
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC---C
Confidence 1122346778899877667777777778899999985433 334322 45689999999765555554332 0
Q ss_pred CCCcEEEEecCCC-ceEEEEe-cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceE-EEEe-ecccceEEEecCC
Q psy5806 1157 PTTKIEKVYLDGS-YRTVLVE-EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRK-IVIS-KVAPYGLSVRQSP 1232 (1332)
Q Consensus 1157 ~~~~I~r~~ldG~-~~~~l~~-~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~-~~~~-~~~P~glav~~~~ 1232 (1332)
..+.|...++... .....+. ..-..+..+++.+.+++++++-...+.|...|+...... .+.. .....++++
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~---- 313 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF---- 313 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE----
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE----
Confidence 1125666677653 2222222 223456788888744455555566789999998654332 2222 555678888
Q ss_pred ccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1233 GKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1233 ~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.+..++.+-...+.|...+..++
T Consensus 314 -s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 314 -APEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -CTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -CCCCCCEEEEEecCCcEEEEEccCC
Confidence 2233357777778899999988766
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.095 Score=62.61 Aligned_cols=195 Identities=9% Similarity=0.002 Sum_probs=126.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECC--CCCCceeEee-cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMS--DSTRIKPIPL-MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~--~g~~~~~i~~-~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~ 1121 (1332)
.+.+++|++.++.|+++-...+.|...++. ++.....+.. .....+.+|++++.++.|+.++. .+.|.++++. +.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~ 182 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIP 182 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcc
Confidence 467999999999987777778899888877 5544444432 22346789999988888888765 5678888875 33
Q ss_pred eEE----EEecCCCCceEEEEcCC---CcEEEEEecCCCCCCCCCcEEEEecCCCceE-EEEecCCCCcceEEEecCCCE
Q psy5806 1122 HKK----ILVNDLMEPLAIAVYPR---RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT-VLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1122 ~~~----~~~~~~~~P~~iavdp~---~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~-~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
... .+..-...+..|+++|. ..+|+.+... ..|...++...... .+....-..+..+++. +++.
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-------EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-------SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-------CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 221 22223356789999996 3345444432 45666676544433 3232233567788998 7777
Q ss_pred EEEEEcCCCeEEEEecCCCc-eEEEEee--------------------------cccceEEEecCCccccccEEEEEECC
Q psy5806 1194 LFWADSTNKRIEYCDFFGRS-RKIVISK--------------------------VAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~-~~~~~~~--------------------------~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
|+.+ ...+.|...|+.... ...+... ....+|+. .+.+.+||.+...
T Consensus 255 l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-----~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 255 LLSA-GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK-----SKNLPFVAFFVEA 328 (450)
T ss_dssp EEEE-ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE-----CSSSSEEEEEETT
T ss_pred EEEE-eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE-----eCCCCEEEEEECC
Confidence 7655 467899999987543 2222210 12234555 2347788888878
Q ss_pred CCEEEEEEe
Q psy5806 1247 AMSVVIARE 1255 (1332)
Q Consensus 1247 ~~~V~~~~~ 1255 (1332)
.+.|...+.
T Consensus 329 d~~i~iw~~ 337 (450)
T 2vdu_B 329 TKCIIILEM 337 (450)
T ss_dssp CSEEEEEEE
T ss_pred CCeEEEEEe
Confidence 889998887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.32 Score=61.75 Aligned_cols=356 Identities=8% Similarity=0.002 Sum_probs=179.3
Q ss_pred ccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCC---CCeEEEEeCCCCeEEEEecccCc---CCCCceEEE
Q psy5806 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY---RPRSIVVHYGLGLMVWADWSRTR---LTNNRIEMA 857 (1332)
Q Consensus 784 p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~---~P~~Iavdp~~g~lywtd~g~~~---~~~~~I~r~ 857 (1332)
+..+++-..++.|| + ...+.|.+.++.+.....++...-. .+.++++.|...+|..+...... .....|...
T Consensus 19 ~~~~~~spdg~~~~-~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIY-R-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCC-C-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEE-E-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 44555555555343 2 3455788888765444444432211 37899999986666665422110 001457777
Q ss_pred ecCCCCcEEEecc---cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCC-------------------
Q psy5806 858 HMDGTNRAVFETE---VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQS------------------- 915 (1332)
Q Consensus 858 ~~dG~~~~~l~~~---l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~------------------- 915 (1332)
++++.....+... -..+..+++.+++ ++|.++.. +.|...++++.....+.....
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ECCCCceEeccCCccccccccccEECCCC-CEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 7776554444332 1235678888888 88888765 689999988766555433111
Q ss_pred cceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCcccc
Q psy5806 916 HPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCA 993 (1332)
Q Consensus 916 ~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~ 993 (1332)
+..+++.. +.+|+.+..... .+. .+..........+ .-.++.
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~-------------------~~~-~~~~~~~~~~~~~------~~~~~~---------- 217 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDS-------------------RVP-IMELPTYTGSIYP------TVKPYH---------- 217 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECT-------------------TSC-EEEECCCSSSSSC------CCEEEE----------
T ss_pred CcceEEECCCCCEEEEEEECCC-------------------ccc-eEEeeccCCcCCC------cceecc----------
Confidence 11233332 223333221110 111 1110000000000 000000
Q ss_pred CCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCccc-c---cCCccceEEEEEeCCCcEEEEE-eCC--C
Q psy5806 994 CPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTL-P---FPEYMSSIFFDYHYSKNLIYFA-DMR--S 1066 (1332)
Q Consensus 994 Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~-p---i~~~~~~~~id~d~~~~~lY~s-d~~--~ 1066 (1332)
...++.. .+. .. |+.+++........+. + ......+..++|.+.++.|+.. +.. .
T Consensus 218 ------~~~~G~~---~~~--------~~-l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 218 ------YPKAGSE---NPS--------IS-LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp ------CCBTTSC---CCE--------EE-EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred ------CCCCCCC---CCe--------eE-EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 0111111 111 12 4444443322110000 0 0012345788999988877444 332 2
Q ss_pred CeEEEEECCCCCCceeEeecCCCC----ceeeEEEecCCeEEEE-cCCCc------eEEEEe-eCCce---EEEEecCCC
Q psy5806 1067 GNLRTFDMSDSTRIKPIPLMNDTI----RDNFVIDWVANNIYYI-DSQMH------TINVAR-SDGQH---KKILVNDLM 1131 (1332)
Q Consensus 1067 ~~I~~~~l~~g~~~~~i~~~~~~~----p~glAvDw~~~~LY~t-d~~~~------~I~v~~-ldG~~---~~~~~~~~~ 1131 (1332)
..|+.+++.+|....++.....+. +..+++.+.++.|+++ ....+ +|.+++ .++.. ...+..+..
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDW 359 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSS
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCe
Confidence 468888887544333322211111 2478898889988886 43333 566677 45544 333433322
Q ss_pred CceE-EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC---CCCcceEEEecCCCEEEEEEcC
Q psy5806 1132 EPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED---LAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1132 ~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~---l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
.... ++++|...+||++.... ......|++++++|......+... -.....++++++++.|.+.-..
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTED--LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSS--CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EEEeeeEEcCCCCEEEEEEcCC--CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 3333 68999988998886432 112467999999886332222211 1234578899888888776444
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.2 Score=56.14 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=124.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.+++|++.+..|.-+. ..+.|+..++.++.....+. ........+++.+.++.|..+ ...+.|.++++. |+...
T Consensus 15 ~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~ 91 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVV 91 (304)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEE
T ss_pred ceEEEEECCCCCEEEEEc-CCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcEEE
Confidence 367999999988777665 77889988977443333222 223356778888777766554 456789999997 55444
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.+..-......|+++|...+|+-+. .. ..|..-++.... ....+...-.....+++++.++.++.+-...+.
T Consensus 92 ~~~~h~~~v~~~~~~~~~~~l~sgs-~D------~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 92 DFEAHPDYIRSIAVHPTKPYVLSGS-DD------LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEE-TT------SCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred EEeCCCCcEEEEEEcCCCCEEEEEC-CC------CeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 4554446689999999665554443 32 456666665432 222333233456788888866555666667788
Q ss_pred EEEEecCCCce-EEEEe-e-cccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1204 IEYCDFFGRSR-KIVIS-K-VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1204 I~~~d~dG~~~-~~~~~-~-~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
|...|+..... ..+.. . .....+++. + . .++.+..+-...+.|...+..++ .....+..
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~-~-~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~ 226 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYY--P-L-PDKPYMITASDDLTIKIWDYQTK---SCVATLEG 226 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEEC--C-S-TTCCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEE--E-c-CCCCEEEEEcCCCeEEEEeCCCC---ccceeeCC
Confidence 99888864332 22222 1 122233330 0 0 12334445556778888887766 44444443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.16 Score=58.76 Aligned_cols=167 Identities=5% Similarity=-0.047 Sum_probs=93.1
Q ss_pred ceeEEeecC-CCceEEEEecC-C----CceEEEecCCCCceEEEeCC-CCCccceeEecCCCeEEEEe--CCCCe--EEE
Q psy5806 740 MVASVDVDT-KNEYIYWSDIS-E----KTIERVRFDMTGRERLVVND-LNRTESIAVDAIGRKIYWTD--MNAQT--IMV 808 (1332)
Q Consensus 740 ~~~~id~d~-~~~~lYwsD~~-~----~~I~r~~~~g~~~~~vi~~~-~~~p~glAvD~~~~nLYwtD--~~~~~--I~v 808 (1332)
....+.+.+ .+++|++.... . ..|+.+++++.....+.... ...+..+++.+.++.|+++. .+... |.+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 345566777 45556665432 2 46888888776544443311 22355678888888887773 23334 999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccC-----------cCCCCceEEEecCCCCcEEEecc-cc----
Q psy5806 809 SDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRT-----------RLTNNRIEMAHMDGTNRAVFETE-VI---- 872 (1332)
Q Consensus 809 ~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~-----------~~~~~~I~r~~~dG~~~~~l~~~-l~---- 872 (1332)
.++++.....+.... . ..++..|..|.+++...... ......|.+.++++.....+... ..
T Consensus 269 ~d~~~g~~~~l~~~~--~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 345 (396)
T 3c5m_A 269 ANPETLENEEVMVMP--P-CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVL 345 (396)
T ss_dssp ECTTTCCEEEEEECC--S-EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCB
T ss_pred EECCCCCeEEeeeCC--C-CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccc
Confidence 998655444433211 1 22677772354444321100 00125788888876655444433 21
Q ss_pred ------cCceeEEeCCCCCeEEEEeCC--CCeEEEEccCCCceeEE
Q psy5806 873 ------WPSCLAIDYSDNPKLYWVDTS--KHTIEYKTLATGRAKRA 910 (1332)
Q Consensus 873 ------~P~gl~iD~~~~~~lYw~d~~--~~~I~~~~~dG~~~~~l 910 (1332)
.+..+++..++ ++|+++... ...|+.+++++...+++
T Consensus 346 ~~~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPND-DGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp TTBSSTTCCCCEECTTS-SEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred cccccCCCCCceEccCC-CeEEEEecCCCCceEEEEEEcccccccc
Confidence 14456777878 888887653 34678888877665554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.19 Score=55.80 Aligned_cols=209 Identities=11% Similarity=0.005 Sum_probs=122.2
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE--eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI--PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i--~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
..+..++|++.++.|+... ..+.|...++.+....+.+ ..........|+++ ++.|+.+ ...+.|.+++ .++.
T Consensus 60 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~~~d-~~~~ 134 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISG-SWDKTAKVWK-EGSL 134 (313)
T ss_dssp SCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEE-ETTSEEEEEE-TTEE
T ss_pred ccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEE-eCCCCEEEEc-CCcE
Confidence 3467899999888777766 6788888887754322222 21223345566664 6666544 4567888888 4544
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
...+.........+++.|..+.++++-... +.|...+ .+.....+....-.....+++.+++. +++-...+
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg 205 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASAD------KTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDG 205 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETT------SCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE--EEEEETTS
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECC------CCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe--EEEccCCC
Confidence 444544455678889888444444443332 4566665 22222222221334567788887655 44556778
Q ss_pred eEEEEecCCCc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1203 RIEYCDFFGRS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1203 ~I~~~d~dG~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
.|...|+.... ...+.. .....+|++ ..+++| ++-...+.|...+..++ .....+......+..+
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~------~~~~~l-~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYCIKL------LPNGDI-VSCGEDRTVRIWSKENG---SLKQVITLPAISIWSV 272 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE------CTTSCE-EEEETTSEEEEECTTTC---CEEEEEECSSSCEEEE
T ss_pred eEEEEECCchhhhhhhhcCCceEEEEEE------ecCCCE-EEEecCCEEEEEECCCC---ceeEEEeccCceEEEE
Confidence 89999987433 333322 555677888 123344 45556788998888777 5555554433333333
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.31 Score=54.57 Aligned_cols=196 Identities=7% Similarity=-0.060 Sum_probs=123.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.+++|++.++.|+.+. ..+.|+..++.++..... +.........|++.+.++.|+.+ ...+.|.++++. ++...
T Consensus 25 ~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSNLLVSA-SDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEE
T ss_pred cEEEEEECCCCCEEEEee-CCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCCCEEEEE-CCCCEEEEEECCCCcEEE
Confidence 367899999887776654 677888888764433333 32334467889998877666554 456789999997 44444
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.+.........++++|...+|+..... +.|...++........+...-.....++++++++.|+.+ ...+.|
T Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i 173 (312)
T 4ery_A 102 TLKGHSNYVFCCNFNPQSNLIVSGSFD-------ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC 173 (312)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETT-------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCE
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE-eCCCcE
Confidence 454444567889999966666555432 467777876544433343333456678888877766655 466789
Q ss_pred EEEecCCCc-eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1205 EYCDFFGRS-RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~-~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...|+.... ...+.. ......+++ ++.+.+|+. -...+.|...+..++
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILA-ATLDNTLKLWDYSKG 224 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEE-----CTTSSEEEE-EETTTEEEEEETTTT
T ss_pred EEEECCCCceeeEEeccCCCceEEEEE-----CCCCCEEEE-EcCCCeEEEEECCCC
Confidence 988886433 333332 223345666 223444444 445678888887666
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.06 E-value=0.16 Score=58.95 Aligned_cols=201 Identities=10% Similarity=0.007 Sum_probs=122.0
Q ss_pred cceEEEEEe----CCCcE-EEEEeCCCCeEEEEECCC------CCCce-----eEe------ecCCCCceeeEEEecCCe
Q psy5806 1045 MSSIFFDYH----YSKNL-IYFADMRSGNLRTFDMSD------STRIK-----PIP------LMNDTIRDNFVIDWVANN 1102 (1332)
Q Consensus 1045 ~~~~~id~d----~~~~~-lY~sd~~~~~I~~~~l~~------g~~~~-----~i~------~~~~~~p~glAvDw~~~~ 1102 (1332)
..+..++|. +.++. |+.+. ..+.|+..++.. +.... .+. ......+..+++.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 198 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-- 198 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--
T ss_pred CcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--
Confidence 457899999 88887 55554 678888888764 33333 322 1234467889998766
Q ss_pred EEEEcCCCceEEEEeeCCc-eEEEEec---C---CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE
Q psy5806 1103 IYYIDSQMHTINVARSDGQ-HKKILVN---D---LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV 1175 (1332)
Q Consensus 1103 LY~td~~~~~I~v~~ldG~-~~~~~~~---~---~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~ 1175 (1332)
++++....+.|.++++... ....+.. - ...+..|+++|...+|+.+.... ..+.|...++........+
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~----~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN----SFGCITLYETEFGERIGSL 274 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----TEEEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----CCceEEEEECCCCccccee
Confidence 5556666789999999744 3333433 2 46789999999766666554330 0136777787654444444
Q ss_pred ec-------------CCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-----------------------
Q psy5806 1176 EE-------------DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----------------------- 1219 (1332)
Q Consensus 1176 ~~-------------~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----------------------- 1219 (1332)
.. .-.....+++.++++.|+.+ ...+.|...|+........+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence 33 23556788999887777655 467889999986443222222
Q ss_pred ecccceEEEecCCccccc---------cEEEEEECCCCEEEEEEecCC
Q psy5806 1220 KVAPYGLSVRQSPGKAFI---------VELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ~~~P~glav~~~~~~~~~---------~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.....+|++ .+.+ ..++++-...+.|...+..+|
T Consensus 354 ~~~v~~~~~-----~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 354 EPGVFDVKF-----LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCCEEEEEE-----ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CCceeEEEe-----ccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 122456777 1111 045555556788888887665
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.16 Score=57.56 Aligned_cols=191 Identities=9% Similarity=0.023 Sum_probs=118.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~ 1125 (1332)
+..++|++.++.|... ...+.|...++..+.....+ .........+++.+.++.|..+. ..+.|.++++.. +....
T Consensus 125 ~~~~~~spdg~~l~~g-~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~-~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATG-THVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGA-IDGIINIFDIATGKLLHT 201 (321)
T ss_dssp CCCEEECTTSSEEEEE-CTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEEE-cCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEE
Confidence 4578899988766655 47788999998754433322 23344578899998777775544 456899999874 43344
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~ 1205 (1332)
+..-....+.|+++|...+| .+-... +.|..-++........+...-.....+++.++++.|+-+ ...+.|.
T Consensus 202 ~~~h~~~v~~l~~spd~~~l-~s~s~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~D~~v~ 273 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLL-VTASDD------GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVK 273 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEE-EEECTT------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEE
T ss_pred EcccCCceeEEEEcCCCCEE-EEEcCC------CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE-eCCCcEE
Confidence 54333457899999955444 443332 457777776555444444334556788998887776654 5677888
Q ss_pred EEecCCCce-EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1206 YCDFFGRSR-KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1206 ~~d~dG~~~-~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
..|+..... ..+.. .....+|++ .+.+.+| ++-...+.|...+
T Consensus 274 iwd~~~~~~~~~~~~h~~~v~~v~~-----s~~g~~l-~s~~~d~~i~vwd 318 (321)
T 3ow8_A 274 VWDVGTRTCVHTFFDHQDQVWGVKY-----NGNGSKI-VSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEE-----CTTSSEE-EEEETTCCEEEEE
T ss_pred EEeCCCCEEEEEEcCCCCcEEEEEE-----CCCCCEE-EEEeCCCeEEEEe
Confidence 888864332 22222 455677777 2223334 4444556665554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.05 E-value=0.6 Score=52.10 Aligned_cols=206 Identities=13% Similarity=0.036 Sum_probs=125.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+..++|++.++.|+... ..+.|...++.++.....+. ........+++.+.++.|+.+ ...+.|.++++. ++...
T Consensus 67 ~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSAS-DDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEE-ETTSCEEEEETTTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEC-CCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCEEEE
Confidence 467899999887776665 67889999987544333332 334456788888766666544 456689999997 44444
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE-EEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT-VLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~-~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.+.........++++|...+|+.+... +.|...++...... .+..........++++++++.|..+ ...+.
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~ 215 (312)
T 4ery_A 144 TLPAHSDPVSAVHFNRDGSLIVSSSYD-------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNT 215 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE-ETTTE
T ss_pred EecCCCCcEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE-cCCCe
Confidence 454333457889999965555544432 45777777544432 2333222345568899888777765 45678
Q ss_pred EEEEecCCCceEEEEe--ecccceE--EEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1204 IEYCDFFGRSRKIVIS--KVAPYGL--SVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~--~~~P~gl--av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
|...|+.......... ......+ .. ...++.++.+-...+.|...+..++ ..+..+...
T Consensus 216 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h 278 (312)
T 4ery_A 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANF-----SVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGH 278 (312)
T ss_dssp EEEEETTTTEEEEEECSSCCSSSCCCEEE-----ECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCC
T ss_pred EEEEECCCCcEEEEEEecCCceEEEEEEE-----EeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhcc
Confidence 9998886443222222 1111111 11 0134555666667788888888776 444444433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.08 Score=60.37 Aligned_cols=155 Identities=9% Similarity=-0.019 Sum_probs=94.8
Q ss_pred cceEEEEEeCCCcEEEEEeCCC----CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC-----------
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRS----GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ----------- 1109 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~----~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~----------- 1109 (1332)
..+..+.|+|.+++|+++.... ..|+.+++.++ ....+.... . +.++++.+.++.|+++...
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 4567889999999998876432 34888887733 333333222 2 6778887788888887422
Q ss_pred ---------------CceEEEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCC--CCCCcEEEEecCCCce
Q psy5806 1110 ---------------MHTINVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDN--SPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1110 ---------------~~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~--~~~~~I~r~~ldG~~~ 1171 (1332)
...|.++++++... ..+... ....++++|. |.+|.+....... .+...|+.++ .| ..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spd-g~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~ 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRD-KIVVNVPHREIIPQYFKFWDIYIWE-DG-KE 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETT-EEEEEEECCCSSCCSSCCEEEEEEE-TT-EE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCC-eEEEEEecccccccccccccEEEeC-CC-ce
Confidence 35688888875544 444332 7788999995 5555443321000 0135788888 44 33
Q ss_pred EEEEecCCCCcceEEEecCCCEEEEEEcC-------CCeEEEEecCCC
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQRRLFWADST-------NKRIEYCDFFGR 1212 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~~~LY~~d~~-------~~~I~~~d~dG~ 1212 (1332)
+.+... ... ..+++++++|+++... ..+|+.+| .|.
T Consensus 211 ~~l~~~--~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~ 253 (347)
T 2gop_A 211 EKMFEK--VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKE 253 (347)
T ss_dssp EEEEEE--ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSC
T ss_pred EEeccC--cce--eeECCCCCEEEEEEccccCCccccceEEEEC-CCc
Confidence 444432 222 2347788888877543 35788888 443
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=90.68 Aligned_cols=37 Identities=38% Similarity=1.023 Sum_probs=33.8
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
.|. ++|+|.+|+||+..|+|||+.||+|+|||.+|+.
T Consensus 118 ~C~-~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 118 DCK-NKFRCDSGRCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp CCS-SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred Ccc-cccccCCCceEccceecCCcccCCCccccccCCC
Confidence 464 6799999999999999999999999999999864
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.34 Score=56.99 Aligned_cols=242 Identities=11% Similarity=0.023 Sum_probs=140.3
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCce
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~ 1092 (1332)
+|+....+..|+..++...... ..+.+ ...+.+++|++.++.|.-. ...++|...++.++.....+ ........
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~---~~l~~h~~~V~~v~~~~~~~~l~sg-s~D~~i~iwd~~~~~~~~~~-~~h~~~V~ 196 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISFDHSGKLLASC-SADMTIKLWDFQGFECIRTM-HGHDHNVS 196 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEECTTSSEEEEE-ETTSCCCEEETTSSCEEECC-CCCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEE---EEEeccCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEE-cCCCCCEE
Confidence 4444443332776676544322 11222 2346799999887755544 47788888887643222222 12234678
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
.+++.+.++.|+ +-...+.|.++++. |.....+.......+.++++| .|.++.+-... +.|..-++.....
T Consensus 197 ~v~~~p~~~~l~-s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D------~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 197 SVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSND------QTVRVWVVATKEC 268 (410)
T ss_dssp EEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETT------SCEEEEETTTCCE
T ss_pred EEEEeCCCCEEE-EEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCC------CeEEEEECCCCce
Confidence 899987666664 44556789999987 554444544445678899988 45555554433 4566666655544
Q ss_pred EEEEecCCCCcceEEEecCC-------------------CEEEEEEcCCCeEEEEecCCCc-eEEEEe-ecccceEEEec
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQ-------------------RRLFWADSTNKRIEYCDFFGRS-RKIVIS-KVAPYGLSVRQ 1230 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~-------------------~~LY~~d~~~~~I~~~d~dG~~-~~~~~~-~~~P~glav~~ 1230 (1332)
...+...-.....+++.++. +.+.++-...+.|...|+.... ...+.. .....+|++
T Consensus 269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~-- 346 (410)
T 1vyh_C 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-- 346 (410)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--
T ss_pred eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE--
Confidence 43333233445566666542 3455566677889888886433 222222 444567888
Q ss_pred CCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1231 SPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1231 ~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
. .++.+.++-...+.|...+..++ .....+......+..+
T Consensus 347 ---~-~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 347 ---H-SGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSL 386 (410)
T ss_dssp ---C-SSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEE
T ss_pred ---c-CCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEE
Confidence 2 23334445557788999888776 4445554433334333
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.32 Score=56.76 Aligned_cols=211 Identities=8% Similarity=-0.008 Sum_probs=126.9
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~ 1125 (1332)
+..++|++.++.|+... ..+.|+..++.++... ..+......+..|++.+.++.|+.+ ...+.|.++++..... ..
T Consensus 126 v~~v~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp EEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE-EEEccCCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECCCCeeEEE
Confidence 57889999887776654 6788998897743222 2222233457789998777777544 4567899999974433 33
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-------cCCCCcceEEEecCCCEEEEEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-------EDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-------~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
+. .......+++.|..|.++.+.... +.|...++........+. ..-.....++++++++.|+-+
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~- 274 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG- 274 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-
Confidence 43 335688999999777766665433 456666665443322221 112346678898887777654
Q ss_pred cCCCeEEEEecCCCce-------------EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceE
Q psy5806 1199 STNKRIEYCDFFGRSR-------------KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDV 1264 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~-------------~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~ 1264 (1332)
...+.|...|+..... ..+.. .....++++ . .++....+-...+.|...+..++ ...
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----~-~~~~~l~sgs~D~~v~iwd~~~~---~~~ 345 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-----T-QNDEYILSGSKDRGVLFWDKKSG---NPL 345 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-----C-GGGCEEEEEETTSEEEEEETTTC---CEE
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE-----C-CCCCEEEEEeCCCeEEEEECCCC---eEE
Confidence 4667888888753211 11111 233456777 2 23444455567789999998887 555
Q ss_pred EEEecCCCCeeeE
Q psy5806 1265 HLIRSNQEDFLNI 1277 (1332)
Q Consensus 1265 ~~~~~~~~~~~~i 1277 (1332)
..+......+..+
T Consensus 346 ~~l~~h~~~v~~v 358 (393)
T 1erj_A 346 LMLQGHRNSVISV 358 (393)
T ss_dssp EEEECCSSCEEEE
T ss_pred EEECCCCCCEEEE
Confidence 5554444444443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.034 Score=62.93 Aligned_cols=177 Identities=11% Similarity=0.119 Sum_probs=111.5
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceE
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLA 1135 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~ 1135 (1332)
++.||+.. ..+.|++++.. |....... ........+++|. .++||+... .+.|..++.+|+..............
T Consensus 107 ~~~l~v~t-~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~-~g~l~vgt~-~~~l~~~d~~g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTS-MDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSE-DGTIYVGSN-DNYLYAINPDGTEKWRFKTNDAITSA 181 (330)
T ss_dssp TTEEEEEC-TTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECT-TSCEEEECT-TSEEEEECTTSCEEEEEECSSCCCSC
T ss_pred CCEEEEEe-cCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcC-CCEEEEEcC-CCEEEEECCCCCEeEEEecCCCceee
Confidence 56777764 45678888755 43322221 2223345677774 667887654 46788888886654443333345667
Q ss_pred EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceE
Q psy5806 1136 IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRK 1215 (1332)
Q Consensus 1136 iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~ 1215 (1332)
+++|+ +|.||++. +. |++.+.+|........ ....+..+++|. +++||++.. .+.|.+++.+|....
T Consensus 182 ~~~d~-~g~l~v~t-~~--------l~~~d~~g~~~~~~~~-~~~~~~~~~~~~-~g~l~v~t~-~~gl~~~~~~g~~~~ 248 (330)
T 3hxj_A 182 ASIGK-DGTIYFGS-DK--------VYAINPDGTEKWNFYA-GYWTVTRPAISE-DGTIYVTSL-DGHLYAINPDGTEKW 248 (330)
T ss_dssp CEECT-TCCEEEES-SS--------EEEECTTSCEEEEECC-SSCCCSCCEECT-TSCEEEEET-TTEEEEECTTSCEEE
T ss_pred eEEcC-CCEEEEEe-CE--------EEEECCCCcEEEEEcc-CCcceeceEECC-CCeEEEEcC-CCeEEEECCCCCEeE
Confidence 88887 78898887 54 8888866654433322 224566788884 458888764 567888887776543
Q ss_pred EEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1216 IVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1216 ~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.... ...+.++++ +.++.||++.. .+.|+++++ +|
T Consensus 249 ~~~~~~~~~~~~~~------~~~g~l~v~t~-~ggl~~~d~-~g 284 (330)
T 3hxj_A 249 RFKTGKRIESSPVI------GNTDTIYFGSY-DGHLYAINP-DG 284 (330)
T ss_dssp EEECSSCCCSCCEE------CTTSCEEEECT-TCEEEEECT-TS
T ss_pred EeeCCCCccccceE------cCCCeEEEecC-CCCEEEECC-CC
Confidence 3322 333456777 34788988874 568999986 55
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.15 Score=65.00 Aligned_cols=199 Identities=7% Similarity=0.005 Sum_probs=124.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCC----eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC------------
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSG----NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM------------ 1110 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~----~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~------------ 1110 (1332)
..++.+++.+++|.++....| .|+.+++.+|....... ... ...+++..+.++.||++....
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCc-ccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 568899999998887754443 79999988554333222 111 245677777788999875432
Q ss_pred ---ceEEEEeeCCce-E-EEEecCCC---CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC------C--ceEEE
Q psy5806 1111 ---HTINVARSDGQH-K-KILVNDLM---EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG------S--YRTVL 1174 (1332)
Q Consensus 1111 ---~~I~v~~ldG~~-~-~~~~~~~~---~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG------~--~~~~l 1174 (1332)
..|.+.++.+.. . ..+..... ...+++++|...+|+++.... ......|+..++++ . ..+.|
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEe
Confidence 348888886433 1 23333322 246899999888898886532 01146799999875 3 23344
Q ss_pred EecCCCCcceEEEecCCCEEEEEEcC---CCeEEEEecCCCc---eEEEEe-e--cccceEEEecCCcccc-ccEEEEEE
Q psy5806 1175 VEEDLAFPNELAIDFKQRRLFWADST---NKRIEYCDFFGRS---RKIVIS-K--VAPYGLSVRQSPGKAF-IVELYWTD 1244 (1332)
Q Consensus 1175 ~~~~l~~p~glaiD~~~~~LY~~d~~---~~~I~~~d~dG~~---~~~~~~-~--~~P~glav~~~~~~~~-~~~lYwtd 1244 (1332)
.. ... ...-.+++++++||+.... +.+|..+++++.. .+.++. . ....++++ . +++|+++-
T Consensus 283 ~~-~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~lv~~~ 353 (710)
T 2xdw_A 283 ID-NFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC-------VRSNFLVLCY 353 (710)
T ss_dssp EC-SSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE-------ETTTEEEEEE
T ss_pred eC-CCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE-------EcCCEEEEEE
Confidence 33 212 1223577789999988543 4579999998653 255554 2 24556777 4 67777776
Q ss_pred CCCC--EEEEEEecCC
Q psy5806 1245 WEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1245 ~~~~--~V~~~~~~~g 1258 (1332)
...+ +|++++..+|
T Consensus 354 ~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATG 369 (710)
T ss_dssp EETTEEEEEEEETTTC
T ss_pred EECCEEEEEEEECCCC
Confidence 5444 5677776555
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.66 Score=52.79 Aligned_cols=204 Identities=9% Similarity=-0.015 Sum_probs=124.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE---eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI---PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i---~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~ 1121 (1332)
.+..++|++.++.|.... ..+.|...++..+.....+ .....+....+++.. .+.| ++-...+.|.++++. ++
T Consensus 99 ~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l-~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQI-VTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TTEE-EEEETTSCEEEEETTTTE
T ss_pred cEEEEEECCCCCEEEEEe-CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CCcE-EEEECCCcEEEEECCCCc
Confidence 467899999888776655 6788888887644322111 112233455666653 3444 455556789999987 44
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
....+..-......++++|. +.++.+-... +.|..-++........+...-...+.+++.++++.|..+ ...
T Consensus 176 ~~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~d 247 (340)
T 1got_B 176 QTTTFTGHTGDVMSLSLAPD-TRLFVSGACD------ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDD 247 (340)
T ss_dssp EEEEECCCSSCEEEEEECTT-SSEEEEEETT------SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE-ETT
T ss_pred EEEEEcCCCCceEEEEECCC-CCEEEEEeCC------CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE-cCC
Confidence 44445444456789999994 5555554333 457777775544444443334557789999877766654 567
Q ss_pred CeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1202 KRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
+.|...|+.......... .....++++ . .++.+..+-...+.|...+..++ .....+..
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----s-~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~ 310 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSF-----S-KSGRLLLAGYDDFNCNVWDALKA---DRAGVLAG 310 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEE-----C-TTSSEEEEEETTSEEEEEETTTC---CEEEEEEC
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEE-----C-CCCCEEEEECCCCeEEEEEcccC---cEeeEeec
Confidence 789998886543322222 123456777 2 23445555567789999987776 44444443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.98 E-value=0.15 Score=58.38 Aligned_cols=212 Identities=11% Similarity=0.004 Sum_probs=127.1
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KK 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~ 1124 (1332)
+..++|++.++.|+... ..+.|+..++.++.. ....+......+..|++.+.++.|+.+. ..+.|.++++.... ..
T Consensus 11 i~~~~~s~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp CCEEEECTTSSEEEEEC-SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEE
T ss_pred eEEEEECCCCCEEEEEe-CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeee
Confidence 56888998887776654 577888888763321 1222223345678999998777776554 45689999997543 22
Q ss_pred E--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce----EEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1125 I--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR----TVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1125 ~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~----~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
. +......+..++++|...+|+.+... +.|...+++.... ..+....-..+..|++.++++.|+.+
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 160 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGS-------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG- 160 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETT-------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE-
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCC-------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE-
Confidence 2 22334568899999976666666543 3465555555442 11212123456788998877766665
Q ss_pred cCCCeEEEEecC-------------------CCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1199 STNKRIEYCDFF-------------------GRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1199 ~~~~~I~~~d~d-------------------G~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...+.|...|+. +.....+.. .....++++ .+.+.+|+.+ ...+.|...+..++
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~-~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-----SANGSRVAWV-SHDSTVCLADADKK 234 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-----CSSSSEEEEE-ETTTEEEEEEGGGT
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE-----CCCCCEEEEE-eCCCEEEEEECCCC
Confidence 456788888853 211111111 445667777 2234455544 46788999998877
Q ss_pred CCcceEEEEecCCCCeeeE
Q psy5806 1259 TGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1259 ~~~~~~~~~~~~~~~~~~i 1277 (1332)
.....+......+..+
T Consensus 235 ---~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 235 ---MAVATLASETLPLLAV 250 (372)
T ss_dssp ---TEEEEEECSSCCEEEE
T ss_pred ---ceeEEEccCCCCeEEE
Confidence 5555555443333333
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.45 Score=53.20 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=127.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+..+.|.+.++.|+... ..+.|+..++..+.....+ .........|++.+.++.| ++-...+.|.++++... ...
T Consensus 57 ~v~~~~~~~~~~~l~s~s-~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYV-LSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEE-EEEETTSCEEEEEGGGTTEEE
T ss_pred cEEEEEEeCCCCEEEEEC-CCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEE-EEECCCCeEEEEECCCCcchh
Confidence 356888999888777665 7788999998755433333 2334567899999766666 45556778999998743 332
Q ss_pred -EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcceEEEecC-CCEEEEEEcCC
Q psy5806 1125 -ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFK-QRRLFWADSTN 1201 (1332)
Q Consensus 1125 -~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~-~~~LY~~d~~~ 1201 (1332)
.+..-......++++|..+.++.+-... +.|..-++........+... ....+.+.+.+. ++.+..+-...
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 2433334578999999766666665433 45666676444333322222 122334455442 33444455667
Q ss_pred CeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1202 KRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
+.|...|+........+. ......+++ . .++.+..+-...+.|...+..++ +....+......+..+
T Consensus 208 ~~i~iWd~~~~~~~~~~~~h~~~v~~~~~-----~-p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVF-----H-PTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCI 276 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEE-----C-SSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEE
T ss_pred CeEEEEeCCCCccceeeCCCCCCEEEEEE-----C-CCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEE
Confidence 888888886543322222 344456666 1 23335556667789999998777 5555554444444333
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.029 Score=63.51 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=106.8
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAI 1136 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~i 1136 (1332)
+.||+.. ..+.|+.++.. |....... ........+++| ..++||++. +.|.+++.+|+...........+.++
T Consensus 148 g~l~vgt-~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d-~~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 148 GTIYVGS-NDNYLYAINPD-GTEKWRFK-TNDAITSAASIG-KDGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp SCEEEEC-TTSEEEEECTT-SCEEEEEE-CSSCCCSCCEEC-TTCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCC
T ss_pred CEEEEEc-CCCEEEEECCC-CCEeEEEe-cCCCceeeeEEc-CCCEEEEEe---CEEEEECCCCcEEEEEccCCcceece
Confidence 4465553 44667777654 33222221 223345677887 467798887 67878886676554443344567889
Q ss_pred EEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEE
Q psy5806 1137 AVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKI 1216 (1332)
Q Consensus 1137 avdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~ 1216 (1332)
++++ +|.||++..+ ..|.+.+.+|.....+-. .-..+..+++| .+++||++. ..+.|.++|.+|.....
T Consensus 221 ~~~~-~g~l~v~t~~-------~gl~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~g~l~v~t-~~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 221 AISE-DGTIYVTSLD-------GHLYAINPDGTEKWRFKT-GKRIESSPVIG-NTDTIYFGS-YDGHLYAINPDGTEKWN 289 (330)
T ss_dssp EECT-TSCEEEEETT-------TEEEEECTTSCEEEEEEC-SSCCCSCCEEC-TTSCEEEEC-TTCEEEEECTTSCEEEE
T ss_pred EECC-CCeEEEEcCC-------CeEEEECCCCCEeEEeeC-CCCccccceEc-CCCeEEEec-CCCCEEEECCCCcEEEE
Confidence 9998 6889888753 358888877765543332 22344567777 467888875 45689999987664333
Q ss_pred EEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1217 VIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1217 ~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
... .....++.+ +.++.||+... .+.++...
T Consensus 290 ~~~~~~~~~~~~~------d~~g~l~~gt~-~G~~~~~~ 321 (330)
T 3hxj_A 290 FETGSWIIATPVI------DENGTIYFGTR-NGKFYALF 321 (330)
T ss_dssp EECSSCCCSCCEE------CTTCCEEEECT-TSCEEEEE
T ss_pred EEcCCccccceEE------cCCCEEEEEcC-CCeEEEEe
Confidence 222 444556666 56788888764 45555444
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.029 Score=71.59 Aligned_cols=198 Identities=9% Similarity=-0.014 Sum_probs=115.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC------------------CceeeEEEecCCeEEEEcC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT------------------IRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~------------------~p~glAvDw~~~~LY~td~ 1108 (1332)
+..++|++.+++|.++.. +.|+..++.++.. ..+...+.. .+.++++.+.++.|+++..
T Consensus 116 ~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CSBCCBCSSTTCEEEEET--TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred ccccEECCCCCEEEEEEC--CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 456778888888887763 6788888764332 233222111 2367888888888887642
Q ss_pred C---------------------------------CceEEEEeeCCceE-EEEecC------CCCceEEEEcCCCcEEEEE
Q psy5806 1109 Q---------------------------------MHTINVARSDGQHK-KILVND------LMEPLAIAVYPRRGLLFYS 1148 (1332)
Q Consensus 1109 ~---------------------------------~~~I~v~~ldG~~~-~~~~~~------~~~P~~iavdp~~g~Lywt 1148 (1332)
. ...|.++++++... ..+... ......++++|...+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~ 272 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence 2 12567777765432 333211 2234679999965555333
Q ss_pred -ecCCCCCCCCCcEEEEecCCCceEEEEecC-CCC----cceEEEecCCCEEEEE-EcCCC------eEEEEe-cCCCc-
Q psy5806 1149 -HWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAF----PNELAIDFKQRRLFWA-DSTNK------RIEYCD-FFGRS- 1213 (1332)
Q Consensus 1149 -d~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~----p~glaiD~~~~~LY~~-d~~~~------~I~~~d-~dG~~- 1213 (1332)
+.+. ....|+..++++.....++... -.+ +..+++.+++++|+++ ....+ +|+..| .++..
T Consensus 273 ~~~~~----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 348 (723)
T 1xfd_A 273 LNRAQ----NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN 348 (723)
T ss_dssp EETTS----CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS
T ss_pred EcCCC----CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc
Confidence 3322 2356888898776655554321 122 2378999999999886 44444 688888 56554
Q ss_pred --eEEEEee-cccce-EEEecCCccccccEEEEEECC----CCEEEEEEec
Q psy5806 1214 --RKIVISK-VAPYG-LSVRQSPGKAFIVELYWTDWE----AMSVVIAREK 1256 (1332)
Q Consensus 1214 --~~~~~~~-~~P~g-lav~~~~~~~~~~~lYwtd~~----~~~V~~~~~~ 1256 (1332)
.+.+... ....+ +++ ++++.+||++-.. ...|++++..
T Consensus 349 ~~~~~l~~~~~~~~~~~~~-----spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 349 DNIQSITSGDWDVTKILAY-----DEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CCCCBSCCSSSCEEEEEEE-----ETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred cceeEeecCCeEEEeeeEE-----cCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 4333321 11122 355 4467888877643 3456777643
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00051 Score=77.42 Aligned_cols=41 Identities=34% Similarity=0.954 Sum_probs=38.2
Q ss_pred CCcccCC-CCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 969 PNACGSN-NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 969 ~n~C~~~-nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.|+|..+ ||||+|+|.+++++|+|.|+.||.|..|+++|.+
T Consensus 2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEE
T ss_pred CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCcccc
Confidence 5899998 9999999999999999999999999999999986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.19 Score=57.73 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=124.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee---cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
+.+++|.+. ++|..+ ...++|+..+++.+....+... ...+....|++.+.++.|.. -...+.|.++++. |+.
T Consensus 85 v~~~~~s~d-~~l~~~-s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~s-gs~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 85 VADLTWVGE-RGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVS-GSKDICIKVWDLAQQVV 161 (344)
T ss_dssp EEEEEEETT-TEEEEE-ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEE
T ss_pred EEEEEEeCC-CeEEEE-ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEE-EeCCCeEEEEECCCCcE
Confidence 678999986 455544 4788999888875544332221 12346788999987776654 4456789999997 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe--cCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE--EDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~--~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...+..-......+++.|....++.+-... ..|..-++........+. ..-..+..+++.+.+++++.+-..
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccc------cccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc
Confidence 444544345678999999766777775443 457666775444332221 112346678888878888777677
Q ss_pred CCeEEEEecCCC-ceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1201 NKRIEYCDFFGR-SRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1201 ~~~I~~~d~dG~-~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|...|+... ....+.. .....+|++ .+.+..+..+-...++|...|..++
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f-----sp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVF-----SPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCSSCEEEEEE-----CSSSSCCEEEEETTSCEEEECTTCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEE-----ccCCCeEEEEEeCCCeEEEEECCCC
Confidence 888999898643 3333332 444567777 2233445555556677877776655
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.81 E-value=0.32 Score=55.60 Aligned_cols=195 Identities=10% Similarity=0.000 Sum_probs=120.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe-ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce--
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP-LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-- 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~-~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-- 1122 (1332)
.+..++|++.++.|+.+. ..+.|+..++.++....... ......+..+++...++.|+.+. ..+.|.+++++...
T Consensus 54 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDW 131 (372)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTE
T ss_pred cccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcc
Confidence 467999999888777665 67788888876443222222 22334678899988777776665 45678888887543
Q ss_pred --EEEEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC------------------CCceEEEEecCCCC
Q psy5806 1123 --KKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD------------------GSYRTVLVEEDLAF 1181 (1332)
Q Consensus 1123 --~~~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld------------------G~~~~~l~~~~l~~ 1181 (1332)
...+... ...+..|+++|...+|+..... +.|...++. -......+...-..
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------CCEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 1223222 4568899999965555544432 356665642 11222222222345
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEEEecCCCce-EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~-~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
...++++++++.|+.+. ..+.|...|+..... ..+.. .....++++ ..++.++.+- ..+.|...+..+
T Consensus 205 v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLAVTF------ITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECSSCCEEEEEE------EETTEEEEEE-TTSSCEEEEEET
T ss_pred EEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEccCCCCeEEEEE------ecCCCEEEEE-eCCeEEEEEccC
Confidence 77899998887777664 667899999964433 33322 445577887 1234444444 678888888766
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.80 E-value=1.8 Score=53.74 Aligned_cols=468 Identities=10% Similarity=0.026 Sum_probs=232.5
Q ss_pred ceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecC-CCCc-eEEEeCCCCCccc
Q psy5806 709 FLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFD-MTGR-ERLVVNDLNRTES 786 (1332)
Q Consensus 709 ~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~-g~~~-~~vi~~~~~~p~g 786 (1332)
.|+++....|+.-++....... .+. .....+.+++|.+.+.+|- +-..++.|+..++. +... ...+...-..+..
T Consensus 32 ~l~~~~~~~v~l~~~~~~~~~~-~~~-~h~~~v~~~~~spdg~~la-sg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~ 108 (611)
T 1nr0_A 32 KIQYCNGTSVYTVPVGSLTDTE-IYT-EHSHQTTVAKTSPSGYYCA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 108 (611)
T ss_dssp EEEEEETTEEEEEETTCSSCCE-EEC-CCSSCEEEEEECTTSSEEE-EEETTSEEEEEESSSTTCCEEEEEECSSSCEEE
T ss_pred EEEeCCCCEEEEecCCCcccCe-Eec-CCCCceEEEEECCCCcEEE-EEeCCCCEEEeECCCCcceeeEeecccCCceEE
Confidence 4445554555555554322111 111 1234577889998755544 43446777777763 2222 1223333456788
Q ss_pred eeEecCCCeEEEEeCCC---CeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCC-C
Q psy5806 787 IAVDAIGRKIYWTDMNA---QTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG-T 862 (1332)
Q Consensus 787 lAvD~~~~nLYwtD~~~---~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG-~ 862 (1332)
+++++.++.|..+.... .+|.+.+. |+....+. .-.....++++.|...+++.+--. . ..|....... +
T Consensus 109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~-D----~~v~lwd~~~~~ 181 (611)
T 1nr0_A 109 ISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNLT-GQARAMNSVDFKPSRPFRIISGSD-D----NTVAIFEGPPFK 181 (611)
T ss_dssp EEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCCC-CCSSCEEEEEECSSSSCEEEEEET-T----SCEEEEETTTBE
T ss_pred EEECCCCCEEEEEECCCCceeEEEEeeC-CCCcceec-CCCCCceEEEECCCCCeEEEEEeC-C----CeEEEEECCCCe
Confidence 99999888887665433 24444442 22222221 122456788898875554444322 2 2444433221 1
Q ss_pred CcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC-CCceeEEec----cCCc---ceEEEEe-CCEEEEEeCC
Q psy5806 863 NRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA-TGRAKRAYA----VQSH---PYTLTVL-DYYVYWTDVQ 933 (1332)
Q Consensus 863 ~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d-G~~~~~l~~----~~~~---P~~la~~-~~~iywtD~~ 933 (1332)
....+...-.....+++.+++ +.| .+-...+.|..-++. |.....+.. ...| ..++++. ++....+-..
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg-~~l-as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDG-SLF-ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEE-EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred EeeeeccccCceEEEEECCCC-CEE-EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence 112222124456678888877 444 443445667666653 433333311 0123 3566665 2333334444
Q ss_pred CCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcc
Q psy5806 934 HSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTRE 1013 (1332)
Q Consensus 934 ~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~ 1013 (1332)
++.|..-+..+++.+.. +....... . . .+ .+.. ....
T Consensus 260 D~~v~lWd~~~~~~~~~---------~~~~~~~~------~---~--~~----------------~~~~-------~~~~ 296 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKT---------IPVGTRIE------D---Q--QL----------------GIIW-------TKQA 296 (611)
T ss_dssp TSEEEEEETTTTEEEEE---------EECCSSGG------G---C--EE----------------EEEE-------CSSC
T ss_pred CCeEEEEeCCCCceeee---------ecCCCCcc------c---e--eE----------------EEEE-------cCCE
Confidence 55555545444422211 00000000 0 0 00 0000 0111
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCce
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~ 1092 (1332)
++..+.... |+...+.... ....+. ....+.+++|++.++.|+-+. ..+.|+..++..+.....+.........
T Consensus 297 l~s~s~d~~-i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 297 LVSISANGF-INFVNPELGS---IDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp EEEEETTCC-EEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred EEEEeCCCc-EEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccCCcceEE
Confidence 112222233 4444433211 111111 123467999999888777665 6788999998744322221111223456
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeCCceEE----EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSDGQHKK----ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~----~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
++++.. .+.|+ +-...+.+.++++.+.... ....-...|.++++.|....++.+... .|...+ .+
T Consensus 372 ~~~~s~-~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~--------~v~~~~-~~ 440 (611)
T 1nr0_A 372 GIKTTS-KGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK--------HIAIYS-HG 440 (611)
T ss_dssp EEEECT-TSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS--------EEEEEE-TT
T ss_pred EEEECC-CCcEE-EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc--------eEEEEe-CC
Confidence 777763 44554 4344567888887653211 011122468899999855466665322 233333 34
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE--e-ecccceEEEecCCccccccEEEEEEC
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI--S-KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~--~-~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
. ...+ . .-..+..+++.++++.|..+ ...+.|...++++.....+. . .....+|++ .+.+.+|. +-.
T Consensus 441 ~-~~~~-~-~~~~v~~va~spdg~~lasg-s~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~f-----spdg~~la-s~s 510 (611)
T 1nr0_A 441 K-LTEV-P-ISYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF-----SNNGAFLV-ATD 510 (611)
T ss_dssp E-EEEE-E-CSSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE-----CTTSSEEE-EEE
T ss_pred c-eeee-e-cCCCceEEEEeCCCCEEEEe-CCCCeEEEEEccCCceeeeeccCCCCceEEEEE-----CCCCCEEE-EEc
Confidence 3 2222 2 12456789999888777665 46678998888765432221 1 455677888 33445554 444
Q ss_pred CCCEEEEEEecC
Q psy5806 1246 EAMSVVIAREKS 1257 (1332)
Q Consensus 1246 ~~~~V~~~~~~~ 1257 (1332)
..+.|...+..+
T Consensus 511 ~d~~v~~w~~~~ 522 (611)
T 1nr0_A 511 QSRKVIPYSVAN 522 (611)
T ss_dssp TTSCEEEEEGGG
T ss_pred CCCCEEEEEcCC
Confidence 667888888765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.80 E-value=0.41 Score=55.32 Aligned_cols=235 Identities=10% Similarity=-0.046 Sum_probs=135.5
Q ss_pred ceEEEEeecceEEEEeCCCCCCCC---cccccCC-ccceEEEEEeCC----C---cEEEEEeCCCCeEEEEECCCCCC--
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLP---VTLPFPE-YMSSIFFDYHYS----K---NLIYFADMRSGNLRTFDMSDSTR-- 1079 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~---~~~pi~~-~~~~~~id~d~~----~---~~lY~sd~~~~~I~~~~l~~g~~-- 1079 (1332)
.+|+....+..|+..+++...... ....+.+ ...+..++|.+. + +.|+.+. ..+.|+..++..+..
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~-~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS-FSGDLLFYRITREDETK 105 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE-TTSCEEEEEEEECTTTC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc-CCCCEEEEEccCCcccc
Confidence 455555544336666665443111 1111222 234678999987 5 5555554 678888888764443
Q ss_pred ---ceeEeecC-----CCCceeeEEE----ecCCe-EEEEcCCCceEEEEeeCC-------ceEE-----EE-------e
Q psy5806 1080 ---IKPIPLMN-----DTIRDNFVID----WVANN-IYYIDSQMHTINVARSDG-------QHKK-----IL-------V 1127 (1332)
Q Consensus 1080 ---~~~i~~~~-----~~~p~glAvD----w~~~~-LY~td~~~~~I~v~~ldG-------~~~~-----~~-------~ 1127 (1332)
...+. .. ...+..+++. +.++. |+.+. ..+.|.++++.. +... .+ .
T Consensus 106 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (397)
T 1sq9_A 106 KVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 183 (397)
T ss_dssp CEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred cccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeeccCcceeeeeecccc
Confidence 22221 22 2567889998 77777 65554 456888888875 2222 22 1
Q ss_pred cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec---C---CCCcceEEEecCCCEEEEEEcCC
Q psy5806 1128 NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE---D---LAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1128 ~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~---~---l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.....+..++++|.. ++.+.... +.|...++........+.. . -.....|+++++++.|+.+. ..
T Consensus 184 ~~~~~i~~~~~~~~~--~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d 254 (397)
T 1sq9_A 184 TPSQFATSVDISERG--LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DS 254 (397)
T ss_dssp SSCCCCCEEEECTTS--EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EE
T ss_pred CCCCCceEEEECCCc--eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cC
Confidence 234568999999955 44443332 5788888875554444443 2 35677899998877777664 44
Q ss_pred ---CeEEEEecCCCce-EEEE--------------eecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcce
Q psy5806 1202 ---KRIEYCDFFGRSR-KIVI--------------SKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263 (1332)
Q Consensus 1202 ---~~I~~~d~dG~~~-~~~~--------------~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~ 1263 (1332)
+.|...|+..... ..+. ......+|++ .+.+.+|+ +-...+.|...+..++ ..
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~-~~~~dg~i~iwd~~~~---~~ 325 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLC-SAGWDGKLRFWDVKTK---ER 325 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE-----CSSSSEEE-EEETTSEEEEEETTTT---EE
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEE-----CCCCCEEE-EEeCCCeEEEEEcCCC---ce
Confidence 6899988864332 2221 1223456777 22344444 4457789999998777 55
Q ss_pred EEEEe
Q psy5806 1264 VHLIR 1268 (1332)
Q Consensus 1264 ~~~~~ 1268 (1332)
...+.
T Consensus 326 ~~~~~ 330 (397)
T 1sq9_A 326 ITTLN 330 (397)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44444
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.016 Score=69.93 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=79.2
Q ss_pred CCCceeeEEEecCCeEEEEcCC---------------------CceEEEEeeCCce-------EEE-Eec----------
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQ---------------------MHTINVARSDGQH-------KKI-LVN---------- 1128 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~---------------------~~~I~v~~ldG~~-------~~~-~~~---------- 1128 (1332)
...|+++++++.++.||++-.+ .+.|..+..++.. -.+ +..
T Consensus 383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~ 462 (592)
T 4a9v_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence 4489999999999999998433 2567777665421 122 211
Q ss_pred -----------CCCCceEEEEcCCCcEEEE-EecCCC-----CCCCCCcEEEEecCCCceEEEEec-CCCCcceEEEecC
Q psy5806 1129 -----------DLMEPLAIAVYPRRGLLFY-SHWGLY-----DNSPTTKIEKVYLDGSYRTVLVEE-DLAFPNELAIDFK 1190 (1332)
Q Consensus 1129 -----------~~~~P~~iavdp~~g~Lyw-td~~~~-----~~~~~~~I~r~~ldG~~~~~l~~~-~l~~p~glaiD~~ 1190 (1332)
.++.|..|++|+ .|.||+ ||.+.. .......+++.+.+......++.. ....|+||++.++
T Consensus 463 ~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD 541 (592)
T 4a9v_A 463 KGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT
T ss_pred ccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCC
Confidence 268899999999 699999 774310 011234799998854455555442 3467999999999
Q ss_pred CCEEEEEEcCCC
Q psy5806 1191 QRRLFWADSTNK 1202 (1332)
Q Consensus 1191 ~~~LY~~d~~~~ 1202 (1332)
++.||++-++-+
T Consensus 542 ~ktLfV~vQHPG 553 (592)
T 4a9v_A 542 QKTLFVGIQHPG 553 (592)
T ss_dssp SSEEEEEEESTT
T ss_pred CCEEEEEEeCCC
Confidence 999999987655
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.15 Score=64.90 Aligned_cols=222 Identities=10% Similarity=0.021 Sum_probs=127.3
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC---------------eEEEEECCCCCCceeEeecCC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG---------------NLRTFDMSDSTRIKPIPLMND 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~---------------~I~~~~l~~g~~~~~i~~~~~ 1088 (1332)
|+.+++++...... .+... ...+++|.+.++.||++..... .|++.++.++.....++....
T Consensus 153 i~v~d~~tg~~~~~--~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 153 IKFMKVDGAKELPD--VLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp EEEEETTTTEEEEE--EEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEECCCCCCCcc--cccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 66677664332111 11111 1356889999999999874432 389989864432223332222
Q ss_pred ---CCceeeEEEecCCeEEEEcC-C---CceEEEEeeCC------c--eEEEEecCCCCceEEEEcCCCcEEEEEecCCC
Q psy5806 1089 ---TIRDNFVIDWVANNIYYIDS-Q---MHTINVARSDG------Q--HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLY 1153 (1332)
Q Consensus 1089 ---~~p~glAvDw~~~~LY~td~-~---~~~I~v~~ldG------~--~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~ 1153 (1332)
....++++.+.++.|+++.. . ...|.++++++ . ..+.+........ -.++|..+.||+.....
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~- 307 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH- 307 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT-
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC-
Confidence 12458889888999888643 2 45788889874 2 2333433332222 34777778888875322
Q ss_pred CCCCCCcEEEEecCCCc---eEEEEecCC-CCcceEEEecCCCEEEEEEcCCC--eEEEEec-CCCceEEEEe-ecccce
Q psy5806 1154 DNSPTTKIEKVYLDGSY---RTVLVEEDL-AFPNELAIDFKQRRLFWADSTNK--RIEYCDF-FGRSRKIVIS-KVAPYG 1225 (1332)
Q Consensus 1154 ~~~~~~~I~r~~ldG~~---~~~l~~~~l-~~p~glaiD~~~~~LY~~d~~~~--~I~~~d~-dG~~~~~~~~-~~~P~g 1225 (1332)
....+|+++++++.. .+.++...- ....++++. .+++|+++-...+ +|...++ +|...+.+.. .....+
T Consensus 308 --~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~ 384 (710)
T 2xdw_A 308 --SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVG 384 (710)
T ss_dssp --CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred --CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEE
Confidence 235689999998764 245554321 134466665 4677877765544 6888888 6664333321 222334
Q ss_pred EEEecCCccccccEEEEEEC---CCCEEEEEEecCC
Q psy5806 1226 LSVRQSPGKAFIVELYWTDW---EAMSVVIAREKSD 1258 (1332)
Q Consensus 1226 lav~~~~~~~~~~~lYwtd~---~~~~V~~~~~~~g 1258 (1332)
++. + +.+..|+++-. .-.+|+.++..+|
T Consensus 385 ~~~--s---~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 385 YSG--Q---KKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEC--C---TTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred Eec--C---CCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 444 2 23445655432 3467888887666
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.091 Score=59.91 Aligned_cols=154 Identities=8% Similarity=-0.068 Sum_probs=94.3
Q ss_pred cceEEEEEeCCCcEEEEEeC--------CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC----Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADM--------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ----MHT 1112 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~--------~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~----~~~ 1112 (1332)
..+.++.+ .+++|+|+.. ..+.|+.+++.++. ...+ ..+..+++.+.++.|+++... ...
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-RRFI-----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-EEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-eEEc-----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 33455556 5567766531 14568888877432 2222 456778888889988887532 345
Q ss_pred EEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCC--------------------CCCCCCCcEEEEecCCCce-
Q psy5806 1113 INVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGL--------------------YDNSPTTKIEKVYLDGSYR- 1171 (1332)
Q Consensus 1113 I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~--------------------~~~~~~~~I~r~~ldG~~~- 1171 (1332)
|.++++++.....+..... ..+++.+|...+|+++.... +.......|++.++++...
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 7788887654443322222 78899999877888875320 0000135799999987765
Q ss_pred EEEEecCCCCcceEEEecCCCEEEEEEcC--------CCeEEEEecCCC
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQRRLFWADST--------NKRIEYCDFFGR 1212 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~~~LY~~d~~--------~~~I~~~d~dG~ 1212 (1332)
..+.. . ....+++.+++ .+|.+... ...|+.++ .|.
T Consensus 166 ~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~ 209 (347)
T 2gop_A 166 EEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK 209 (347)
T ss_dssp EEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE
T ss_pred eeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc
Confidence 45544 3 56688898877 66655432 33688887 443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.3 Score=57.09 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=121.6
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-e--eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc----
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-K--PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ---- 1121 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~--~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~---- 1121 (1332)
.+++++....++++-...|.|...+++..... . ..+....+.+..|++.+..+++.++-...+.|.++++...
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 35566666566665567788888887532111 1 1111223467888888734555556556789999999743
Q ss_pred ----eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE--ecCCCCcceEEEecCCCEEE
Q psy5806 1122 ----HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV--EEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1122 ----~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~--~~~l~~p~glaiD~~~~~LY 1195 (1332)
....+..-......|+++|....++++-... +.|..-++........+ ...-.....|++.++++.|+
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 2333444446789999999654555554333 46777787665544444 22334567889998777777
Q ss_pred EEEcCCCeEEEEecCCCceEEEE-e---ecccceEEEecCCccccccEEEEEE---CCCCEEEEEEecCC
Q psy5806 1196 WADSTNKRIEYCDFFGRSRKIVI-S---KVAPYGLSVRQSPGKAFIVELYWTD---WEAMSVVIAREKSD 1258 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~~~~~~~-~---~~~P~glav~~~~~~~~~~~lYwtd---~~~~~V~~~~~~~g 1258 (1332)
.+. ..+.|...|+........+ . ...+..+++ ..++.++.+- ...+.|...+..++
T Consensus 193 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 193 TSC-RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF------VSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEE-TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE------CSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEe-cCCcEEEEeCCCCceeeeeccCCCCCcceEEEE------cCCCcEEEEeccCCCCceEEEEcCccc
Confidence 664 6688999998754433222 2 334677777 1234555554 56788888887765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.64 Score=54.19 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=127.0
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEE-EEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFF-DYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~i-d~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
.+|+....+..|+..++........ +... ....+ .+.+.++.|... ...+.|...++..+ ............+
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~-~~~~~~~~h~~~v 142 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIRDGSKM---LKRA-DYTAVDTAKLQMRRFILG-TTEGDIKVLDSNFN-LQREIDQAHVSEI 142 (420)
T ss_dssp TTEEEEEETTEEEEEECCSEETTTT---SCSC-CEEEEEEECSSSCEEEEE-ETTSCEEEECTTSC-EEEEETTSSSSCE
T ss_pred CeEEEEEcCCcEEEEEecccceeeE---EecC-CceEEEEEecCCCEEEEE-ECCCCEEEEeCCCc-ceeeecccccCcc
Confidence 3444444443266666553322211 1122 23333 456666655554 46788988887632 2222222334567
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
..|++.+.++.|+.+ ...+.|.++++. ++....+..-......|+++|...+|+.+... +.|..-++....
T Consensus 143 ~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 143 TKLKFFPSGEALISS-SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-------GTIRLWECGTGT 214 (420)
T ss_dssp EEEEECTTSSEEEEE-ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTTTE
T ss_pred EEEEECCCCCEEEEE-eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-------CcEEEeECCCCc
Confidence 889998877766544 456789999997 55555554444668899999976666654432 356666665444
Q ss_pred eEEEEecC------------------------CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe---eccc
Q psy5806 1171 RTVLVEED------------------------LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS---KVAP 1223 (1332)
Q Consensus 1171 ~~~l~~~~------------------------l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~---~~~P 1223 (1332)
....+... ......++++++++.|+.+ ...+.|...|+.......... ....
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG-HVSGVITVHNVFSKEQTIQLPSKFTCSC 293 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE-ETTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE-cCCCeEEEEECCCCceeEEcccccCCCc
Confidence 33333211 1222344556555555544 567789998986544333332 3456
Q ss_pred ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+|++ .+.+..++++-...+.|...+..++
T Consensus 294 ~~~~~-----~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 294 NSLTV-----DGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEEEE-----CSSCTTEEEEEETTSEEEEEETTCT
T ss_pred eeEEE-----eCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 67777 2233324445556688888887765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.18 Score=56.93 Aligned_cols=193 Identities=10% Similarity=0.004 Sum_probs=118.1
Q ss_pred cceEEEEEeCCCc-EEEEEeCCCCeEEEEEC-CCCCCceeEeec--CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC
Q psy5806 1045 MSSIFFDYHYSKN-LIYFADMRSGNLRTFDM-SDSTRIKPIPLM--NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1045 ~~~~~id~d~~~~-~lY~sd~~~~~I~~~~l-~~g~~~~~i~~~--~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG 1120 (1332)
..+..++|++.++ .|+... ..+.|+..++ ..+ .. ..+.. ....+..|++.. ++.|+ +-...+.|.++++..
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~-~~-~~~~~~~~~~~v~~l~~~~-~~~l~-s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSP-SF-QALTNNEANLGICRICKYG-DDKLI-AASWDGLIEVIDPRN 131 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSS-SE-EECBSCCCCSCEEEEEEET-TTEEE-EEETTSEEEEECHHH
T ss_pred CceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCC-ce-EeccccCCCCceEEEEeCC-CCEEE-EEcCCCeEEEEcccc
Confidence 3567899999888 777665 6788999988 633 22 22223 344678899987 55554 545567899998763
Q ss_pred ---------ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC-Cc--eEEEEecCCCCcceEEEe
Q psy5806 1121 ---------QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG-SY--RTVLVEEDLAFPNELAID 1188 (1332)
Q Consensus 1121 ---------~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG-~~--~~~l~~~~l~~p~glaiD 1188 (1332)
............+.+++++|. + |+.+... +.|...++.. .. ........-..+..+++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~ 202 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-R-LIVGMNN-------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp HTTBCEEEEESCSSSSSSCCCEEEEEECSS-E-EEEEEST-------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred cccccccccCCeeeEEeeCCceEEEEecCC-c-EEEEeCC-------CeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence 211111123356889999985 3 5554332 4678778765 32 222222223456788898
Q ss_pred c-CCCEEEEEEcCCCeEEEEecCCC------ceEEEEe--ec---------ccceEEEecCCccccccEEEEEECCCCEE
Q psy5806 1189 F-KQRRLFWADSTNKRIEYCDFFGR------SRKIVIS--KV---------APYGLSVRQSPGKAFIVELYWTDWEAMSV 1250 (1332)
Q Consensus 1189 ~-~~~~LY~~d~~~~~I~~~d~dG~------~~~~~~~--~~---------~P~glav~~~~~~~~~~~lYwtd~~~~~V 1250 (1332)
+ +++.|+.+ ...+.|...+++.. ....... .. ...++++ .+.+.+|+ +-...+.|
T Consensus 203 ~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~-~~~~dg~i 275 (342)
T 1yfq_A 203 PKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-----SPRHKFLY-TAGSDGII 275 (342)
T ss_dssp SGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE-----CTTTCCEE-EEETTSCE
T ss_pred CCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEE-----cCCCCEEE-EecCCceE
Confidence 7 66666655 45778888777643 3222222 22 5567777 22344454 44467889
Q ss_pred EEEEecCC
Q psy5806 1251 VIAREKSD 1258 (1332)
Q Consensus 1251 ~~~~~~~g 1258 (1332)
...+..++
T Consensus 276 ~vwd~~~~ 283 (342)
T 1yfq_A 276 SCWNLQTR 283 (342)
T ss_dssp EEEETTTT
T ss_pred EEEcCccH
Confidence 99998777
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.12 Score=66.16 Aligned_cols=220 Identities=15% Similarity=0.106 Sum_probs=122.5
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC-------------eEEEEECCCCCCceeEeecCCC-
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG-------------NLRTFDMSDSTRIKPIPLMNDT- 1089 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~-------------~I~~~~l~~g~~~~~i~~~~~~- 1089 (1332)
|+.+++++..... ..+.... ..+++|.+. +.||++..... .|++.++.++.....++.....
T Consensus 191 i~v~dl~tg~~~~--~~~~~~~-~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 191 VKFVGVADGKPLA--DELKWVK-FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp EEEEETTTCCEEE--EEEEEEE-SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred EEEEECCCCCCCC--ccCCCce-eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 6777776443211 1111111 136788999 89999864332 4888887533322233322222
Q ss_pred --CceeeEEEecCCeEEEEcC----CCceEEEEeeCCc--e-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCc
Q psy5806 1090 --IRDNFVIDWVANNIYYIDS----QMHTINVARSDGQ--H-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTK 1160 (1332)
Q Consensus 1090 --~p~glAvDw~~~~LY~td~----~~~~I~v~~ldG~--~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~ 1160 (1332)
...++++++.++.|+++.. ....|.++++++. . .+.+.......... ++|..+.||+..... ....+
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~---~~~~~ 342 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG---APLKK 342 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT---CTTCE
T ss_pred CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC---CCCCE
Confidence 2457888888888887643 2457888998754 2 33344433333333 457777888775322 23578
Q ss_pred EEEEecCCC--ceEEEEecCCCCcceEEEecCCCEEEEEEcCC--CeEEEEecCCCceEEEE-e-ecccceEEEecCCcc
Q psy5806 1161 IEKVYLDGS--YRTVLVEEDLAFPNELAIDFKQRRLFWADSTN--KRIEYCDFFGRSRKIVI-S-KVAPYGLSVRQSPGK 1234 (1332)
Q Consensus 1161 I~r~~ldG~--~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~--~~I~~~d~dG~~~~~~~-~-~~~P~glav~~~~~~ 1234 (1332)
|+++++++. ..+.++...-....+++++ +++|+++.... .+|+.++++|...+.+. + .....+++. |
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~--s--- 415 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG--R--- 415 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC--C---
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec--C---
Confidence 999999873 4455554332223355555 67888876544 45788888776443332 1 122234444 2
Q ss_pred ccccEEEEEEC---CCCEEEEEEecCC
Q psy5806 1235 AFIVELYWTDW---EAMSVVIAREKSD 1258 (1332)
Q Consensus 1235 ~~~~~lYwtd~---~~~~V~~~~~~~g 1258 (1332)
+.++.|+++-. .-++|+.++..++
T Consensus 416 ~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 416 PGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp BTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 23344554432 3356777776655
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.41 Score=55.30 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=100.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCC--eEEEEcCCCceEEEEeeC-Cc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN--NIYYIDSQMHTINVARSD-GQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~--~LY~td~~~~~I~v~~ld-G~ 1121 (1332)
..+..++|.+.++.++++-...+.|...++..+.....+ .....+..+++.+.+. .+.++....+.|.++++. ++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 357899999955556666557889999998744332222 2334566777766543 244555556789999987 44
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEE---------------ecCCCCcceE
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLV---------------EEDLAFPNEL 1185 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~---------------~~~l~~p~gl 1185 (1332)
....+.........|+++|...+|+.+-... +.|...++.... ....+ ...-.....+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 4444544445678999999777666664433 457766764433 11111 1112346678
Q ss_pred EEecCCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1186 AIDFKQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1186 aiD~~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
++.++++.|+.+. ..+.|...|+...
T Consensus 252 ~~~~~~~~l~~~~-~dg~i~vwd~~~~ 277 (408)
T 4a11_B 252 CFTSDGLHLLTVG-TDNRMRLWNSSNG 277 (408)
T ss_dssp EECTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred EEcCCCCEEEEec-CCCeEEEEECCCC
Confidence 9998877777664 5678999898744
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.62 Score=54.74 Aligned_cols=216 Identities=7% Similarity=0.019 Sum_probs=128.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK- 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~- 1124 (1332)
.+..++|++....|.-+ ...+.|...++..+....++. .....+..|++++.++.| ++-...+.|.++++.+....
T Consensus 110 ~V~~~~~~p~~~~l~s~-s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l-~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSA-SEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLL-ASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp CEEEEEECSSSSEEEEE-ESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEE-EEEETTSCCCEEETTSSCEEE
T ss_pred cEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceeE
Confidence 35788899887655444 477889999987554443332 334467889998755544 55556678999999854433
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.+..-......++++|...+|+-+. .. ..|..-++........+...-.....+++.+++..|. +-...+.|
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s-~D------~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~-s~s~D~~v 258 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSAS-RD------KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA-SCSNDQTV 258 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEE-TT------SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE-EEETTSCE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe-CC------CeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEE-EEcCCCeE
Confidence 3433345678999999655554443 32 4677777755444333333334566777776665554 44567788
Q ss_pred EEEecCCCceEEEE-e-ecccceEEEecCCcccc----------------ccEEEEEECCCCEEEEEEecCCCCcceEEE
Q psy5806 1205 EYCDFFGRSRKIVI-S-KVAPYGLSVRQSPGKAF----------------IVELYWTDWEAMSVVIAREKSDTGQWDVHL 1266 (1332)
Q Consensus 1205 ~~~d~dG~~~~~~~-~-~~~P~glav~~~~~~~~----------------~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~ 1266 (1332)
...|+........+ . ......+++ +++..+ .+.+.++-...+.|...|..++ .....
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~ 333 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT 333 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEE
Confidence 88888644332222 2 333345555 222111 1445566667788888888777 55445
Q ss_pred EecCCCCeeeE
Q psy5806 1267 IRSNQEDFLNI 1277 (1332)
Q Consensus 1267 ~~~~~~~~~~i 1277 (1332)
+......+..+
T Consensus 334 ~~~h~~~v~~v 344 (410)
T 1vyh_C 334 LVGHDNWVRGV 344 (410)
T ss_dssp EECCSSCEEEE
T ss_pred EECCCCcEEEE
Confidence 44433334443
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00042 Score=65.43 Aligned_cols=43 Identities=33% Similarity=0.857 Sum_probs=2.5
Q ss_pred CCccccccCC-CCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 388 RQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 388 ~qp~~~n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+.+.++|+|. .+.|++.|++.+++|+|.|+.||.+..|+++|+
T Consensus 64 ~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 64 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107 (107)
T ss_dssp TEEEC---------------------------------------
T ss_pred CccccccccCCCCCcCCeeecCCCCEEEECCCCceECCCCCccC
Confidence 3445678898 478999999999999999999999999999884
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.067 Score=61.87 Aligned_cols=216 Identities=9% Similarity=-0.025 Sum_probs=122.4
Q ss_pred cceEEEEEeCCCcEEEEEeCC-----CCeEEEEECCCCCCceeEee---cCCCCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMR-----SGNLRTFDMSDSTRIKPIPL---MNDTIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~-----~~~I~~~~l~~g~~~~~i~~---~~~~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
..+.+++|++.+..|.-+... .+.|...+...+.....+.. ........|++.+.+ .+..+ ...+.|.++
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~-s~dg~v~lW 120 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVA-SDSGAVELW 120 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEE-ETTSCEEEC
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEE-ECCCEEEEe
Confidence 457899999998877665432 45676666543332222211 122346778888644 44444 346689888
Q ss_pred eeCC-ceEEE----EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCC
Q psy5806 1117 RSDG-QHKKI----LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1117 ~ldG-~~~~~----~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~ 1191 (1332)
++.. +...+ ...-......|+++|...+|.-... . ..|..-++........+...-...+.+++.+++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-d------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-D------FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-T------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-C------CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 8863 32211 1112345789999996555544433 2 457777776555444444334566788888877
Q ss_pred CEEEEEEcCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
+.++.+-...+.|...|+.......... ...+.+|++ .+.++.++.+-...+.|...+..++ .....+
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~-----sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~ 265 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW-----HPEKDDTFACGDETGNVSLVNIKNP---DSAQTS 265 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE-----CTTSTTEEEEEESSSCEEEEESSCG---GGCEEE
T ss_pred CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh-----hhcccceEEEeecccceeEEECCCC---cEeEEE
Confidence 7777777778889888886433222222 344567777 2334556666557788888888776 444555
Q ss_pred ecCCCCeeeE
Q psy5806 1268 RSNQEDFLNI 1277 (1332)
Q Consensus 1268 ~~~~~~~~~i 1277 (1332)
......+..|
T Consensus 266 ~~~~~~v~~l 275 (357)
T 4g56_B 266 AVHSQNITGL 275 (357)
T ss_dssp CCCSSCEEEE
T ss_pred eccceeEEEE
Confidence 4433333333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.68 Score=52.79 Aligned_cols=199 Identities=9% Similarity=0.012 Sum_probs=117.0
Q ss_pred ceEEEEEeCC--CcEEEEEeCCCCeEEEEECCCCCCcee-EeecCCCCceeeEEEec--CCeEEEEcCCCceEEEEeeCC
Q psy5806 1046 SSIFFDYHYS--KNLIYFADMRSGNLRTFDMSDSTRIKP-IPLMNDTIRDNFVIDWV--ANNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1046 ~~~~id~d~~--~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~~~~~p~glAvDw~--~~~LY~td~~~~~I~v~~ldG 1120 (1332)
.+..++|.+. ++.|+.+. ..+.|+..++.++..... ........+..+++.+. ++.|+.+ ...+.|.++++..
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCS-YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKE 134 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCT
T ss_pred cEEEEEeCCCCCCCEEEEec-cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCC
Confidence 4678899765 55555554 678888888764431122 22223446788999877 4555544 4567899999975
Q ss_pred c---eEEEEecCCCCceEEEEcCC------------CcEEEEEecCCCCCCCCCcEEEEecCCCce-EEE---EecCCCC
Q psy5806 1121 Q---HKKILVNDLMEPLAIAVYPR------------RGLLFYSHWGLYDNSPTTKIEKVYLDGSYR-TVL---VEEDLAF 1181 (1332)
Q Consensus 1121 ~---~~~~~~~~~~~P~~iavdp~------------~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-~~l---~~~~l~~ 1181 (1332)
. ....+.........++++|. ++.++.+-... +.|...++..... ..+ +...-..
T Consensus 135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDW 208 (379)
T ss_dssp TSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecccCc
Confidence 4 22224444456789999995 35555554333 4566666643322 122 2222345
Q ss_pred cceEEEecCC--CEEEEEEcCCCeEEEEecCCCc---eEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1182 PNELAIDFKQ--RRLFWADSTNKRIEYCDFFGRS---RKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1182 p~glaiD~~~--~~LY~~d~~~~~I~~~d~dG~~---~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
...|++.++. +.+..+-...+.|...|+.... ...+.. .....++++ .+.+.+|+.+. ..+.|..
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~~~-~dg~i~i 282 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW-----SLSGNVLALSG-GDNKVTL 282 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE-----CSSSCCEEEEE-SSSSEEE
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEE-----cCCCCEEEEec-CCCcEEE
Confidence 6788999873 4555555677889888887543 222222 333456677 33455566555 4677877
Q ss_pred EEecCC
Q psy5806 1253 AREKSD 1258 (1332)
Q Consensus 1253 ~~~~~g 1258 (1332)
.+...+
T Consensus 283 w~~~~~ 288 (379)
T 3jrp_A 283 WKENLE 288 (379)
T ss_dssp EEEEET
T ss_pred EeCCCC
Confidence 776644
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.2 Score=58.00 Aligned_cols=200 Identities=11% Similarity=0.003 Sum_probs=125.8
Q ss_pred ceEEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCCceeEee------------cCCCCceeeEEEecCCeEEEEcCCCce
Q psy5806 1046 SSIFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTRIKPIPL------------MNDTIRDNFVIDWVANNIYYIDSQMHT 1112 (1332)
Q Consensus 1046 ~~~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~------------~~~~~p~glAvDw~~~~LY~td~~~~~ 1112 (1332)
.+..++|++ .++.|+.. ...+.|...++.++.....+.. .....+..|++.+..++++++-...+.
T Consensus 45 ~v~~~~~s~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSG-GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp CEEEEEECTTTCCEEEEE-ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred cEEEEEEecCCCCEEEEE-cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 467899999 66555544 4678899999886554443321 133467788888755656666666789
Q ss_pred EEEEeeCCceEEEEecCCCCceEEEEcCCCc--EEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecC
Q psy5806 1113 INVARSDGQHKKILVNDLMEPLAIAVYPRRG--LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1113 I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g--~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~ 1190 (1332)
|.+++++................+++.|... .++.+.... +.|...++........+...-.....|++.++
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 124 LKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCCCSCEEEEEECSS
T ss_pred EEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCCCCcEEEEEECCC
Confidence 9999998654444223335678888888533 244443332 56888888655544444433455678999988
Q ss_pred CCEEEEEEcCCCeEEEEecCCCc-eEEEE----------------e-ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFGRS-RKIVI----------------S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG~~-~~~~~----------------~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
++.|+++-...+.|...|+.... ....+ . .....+|++ .+.+.+|+.. ...+.|..
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~-~~dg~i~v 271 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF-----TSDGLHLLTV-GTDNRMRL 271 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE-----CTTSSEEEEE-ETTSCEEE
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE-----cCCCCEEEEe-cCCCeEEE
Confidence 88766666678889998886432 11111 1 334566777 2234445444 46678888
Q ss_pred EEecCC
Q psy5806 1253 AREKSD 1258 (1332)
Q Consensus 1253 ~~~~~g 1258 (1332)
.+..++
T Consensus 272 wd~~~~ 277 (408)
T 4a11_B 272 WNSSNG 277 (408)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 887766
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.044 Score=65.26 Aligned_cols=199 Identities=9% Similarity=0.043 Sum_probs=125.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~ 1124 (1332)
.+..|+|+|.+..+..+-...|.|...++..+.....+... ..+...+|++.+..+++.++-...+.|.++++.+....
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 36899999976656655557889998887754443333222 23467889998766666667677789999999877655
Q ss_pred EEecC---CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1125 ILVND---LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1125 ~~~~~---~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.+... ......++++|...+| .+-... +.|...+++|.....+.. .-.....|++.+.++.++.+-...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~d------g~i~~wd~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMV-VTGDNV------GNVILLNMDGKELWNLRM-HKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEE-EEECSS------SBEEEEESSSCBCCCSBC-CSSCEEEEEECTTCSSEEEEEETT
T ss_pred EEeccCCCCccEEEEEECCCCCEE-EEEeCC------CcEeeeccCcceeEEEec-ccceEEeeeecCCCceEEEEecCc
Confidence 53322 1234679999955444 443322 568888888765433321 224567888988887777776677
Q ss_pred CeEEEEecCC-CceEEEEe-e---cccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1202 KRIEYCDFFG-RSRKIVIS-K---VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 ~~I~~~d~dG-~~~~~~~~-~---~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.|...|+.. .....+.. . ....+|++ ++.+.+|+ +-...+.|...+..++
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-----spdg~~l~-s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACF-----SPDGARLL-TTDQKSEIRVYSASQW 328 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCB-----CTTSSEEE-EEESSSCEEEEESSSS
T ss_pred ceeeEEecccccccceEEEeeeccccccceeE-----CCCCCeeE-EEcCCCEEEEEECCCC
Confidence 7888878753 22222222 2 22345555 22344444 4456788888887766
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=1.7 Score=48.96 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=101.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~ 1124 (1332)
.+..++|++.++.|+... ..+.|...++..+.............+.++++++.++.|+.+. ..+.|.++++.. +...
T Consensus 177 ~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CCceEEEEECCCCceee
Confidence 467888898887777665 6788999998742222233333445678899998777776554 456899999974 4333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCC-------CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYD-------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~-------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
.+. .......++++|...+|+.+...... ......|...++........+.........+++.++++.|.-+
T Consensus 255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 343 44678899999987777777543200 0011145555554444444444344567788888877666655
Q ss_pred EcCCCeEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG 1211 (1332)
...+.|...+++.
T Consensus 334 -~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 334 -GEDGFIRLHHFEK 346 (369)
T ss_dssp -ETTSEEEEEEECH
T ss_pred -cCCCeEEEEECcc
Confidence 3556777766653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.47 Score=53.66 Aligned_cols=230 Identities=9% Similarity=-0.071 Sum_probs=126.5
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEE------eCCCcEEEEEeCCCCeEEEEECCCCCCceeEee
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDY------HYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL 1085 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~------d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~ 1085 (1332)
.+|+....+..|+..++...... ...+.+ ...+..++| ++.++.|+... ..+.|...++..+......+.
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMP--VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS-RDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSC--SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE-TTSCEEEECTTSCSSCSEEEC
T ss_pred ceEEEecCCCeEEEEeCCCCCcc--EEEEEecccceEEEeeccccccCCCccEEEEEe-CCCeEEEEeCCCCCCcceecc
Confidence 34444443322666666543311 111222 223566755 45555665554 678899998875542222222
Q ss_pred cCCC----CceeeE----EEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcC---CCcEEEEEecCCCC
Q psy5806 1086 MNDT----IRDNFV----IDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYP---RRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1086 ~~~~----~p~glA----vDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp---~~g~Lywtd~~~~~ 1154 (1332)
...+ ....++ +++.++.|+ +-...+.|.++++.................++++| ...+|+.+...
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--- 233 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVC-AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE--- 233 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEE-EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST---
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEE-EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC---
Confidence 1111 445555 444455554 44456789999998655444333345789999999 55566555432
Q ss_pred CCCCCcEEEEecCCCceE-EE----EecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc-e--------------
Q psy5806 1155 NSPTTKIEKVYLDGSYRT-VL----VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS-R-------------- 1214 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG~~~~-~l----~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~-~-------------- 1214 (1332)
+.|...++...... .+ ....-.....+++.++++.++++-...+.|...|+.... +
T Consensus 234 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 234 ----GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp ----TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred ----CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 45666555432211 11 112345567888998777567776778888888886322 1
Q ss_pred --EEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1215 --KIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1215 --~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+.. .....+|++ .+.+.+|.++-...+.|...+..+.
T Consensus 310 ~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 310 SVSLLQNVTLSTQPISSLDW-----SPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEEEECCSSCEEEEEE-----CSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccceeeccccCCCCeeEEEE-----cCCCCeEEEEecCCCcEEEEECCCc
Confidence 12222 334466777 3345566656667788888776543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.39 E-value=1.5 Score=55.86 Aligned_cols=164 Identities=10% Similarity=0.021 Sum_probs=99.2
Q ss_pred ceEEEEEeCCCcEE-EEEeCCC--CeEEEEECCCCCC------ceeEeec-CCC-----CceeeEEEecCCeEE-EEc--
Q psy5806 1046 SSIFFDYHYSKNLI-YFADMRS--GNLRTFDMSDSTR------IKPIPLM-NDT-----IRDNFVIDWVANNIY-YID-- 1107 (1332)
Q Consensus 1046 ~~~~id~d~~~~~l-Y~sd~~~--~~I~~~~l~~g~~------~~~i~~~-~~~-----~p~glAvDw~~~~LY-~td-- 1107 (1332)
.+..++|.+.++.+ ++.+... ..|+.+++.+|.. ...++.. ..+ .+...++.+.++.|+ |..
T Consensus 261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE 340 (740)
T ss_dssp EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT
T ss_pred EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC
Confidence 35678899887744 4444333 3688888775541 2222211 111 145778888888876 653
Q ss_pred CCCceEEEEeeCCceEEEEecCCCCceEEE-EcCCCcEEEEEecC--CCCCCCCCcEEEEecCCCceEEEEecCC----C
Q psy5806 1108 SQMHTINVARSDGQHKKILVNDLMEPLAIA-VYPRRGLLFYSHWG--LYDNSPTTKIEKVYLDGSYRTVLVEEDL----A 1180 (1332)
Q Consensus 1108 ~~~~~I~v~~ldG~~~~~~~~~~~~P~~ia-vdp~~g~Lywtd~~--~~~~~~~~~I~r~~ldG~~~~~l~~~~l----~ 1180 (1332)
.+...|..++++|...+.+..+.-....+. +| ++.||++... . +.....|++++++|......++..+ .
T Consensus 341 ~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~--~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~ 416 (740)
T 4a5s_A 341 EGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKG--MPGGRNLYKIQLIDYTKVTCLSCELNPERC 416 (740)
T ss_dssp TSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGG--CTTCBEEEEEETTEEEEEEESSTTTSTTTB
T ss_pred CCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCC--CCceeEEEEEECCCCCcceeeccccCCCCC
Confidence 234678889999876666655533444433 55 7899998765 2 2345689999999977654444222 2
Q ss_pred CcceEEEecCCCEEEEEEcC--CCeEEEEecCCCc
Q psy5806 1181 FPNELAIDFKQRRLFWADST--NKRIEYCDFFGRS 1213 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~ 1213 (1332)
.....+++++++.+.+.-.. ...+...+.++..
T Consensus 417 ~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 417 QYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp CBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 34567888877765554433 3356666766443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.43 Score=60.62 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=103.9
Q ss_pred eEEEEEeCCCcEEEEEeCC---CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC---CceEEEEeeCC
Q psy5806 1047 SIFFDYHYSKNLIYFADMR---SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ---MHTINVARSDG 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~---~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~---~~~I~v~~ldG 1120 (1332)
..++.+++.++.|+++... .+.|+.++++++....+.+......-... +++.++.||+.... +.+|.++++++
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~ 314 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN 314 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 4678899999999876542 25899999875543322222222222222 56678999886432 46898999985
Q ss_pred ceE---EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1121 QHK---KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1121 ~~~---~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
... +.+........ .+++..++|+++.... ...+|+..+++|.....+.........+++.++++++|+++
T Consensus 315 ~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 315 PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred CCccccEEEecCCCCEE--EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 432 33333222323 6777777888876433 24689999999876655532222333455666778888887
Q ss_pred EcC---CCeEEEEecCCCceEEEEe
Q psy5806 1198 DST---NKRIEYCDFFGRSRKIVIS 1219 (1332)
Q Consensus 1198 d~~---~~~I~~~d~dG~~~~~~~~ 1219 (1332)
-.. ...|..+|+++...+.+..
T Consensus 389 ~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp EECSSSCCEEEEECTTTCCEEEEEC
T ss_pred ecCCCCCCEEEEEECCCCeEEEEEe
Confidence 543 3689999997766655554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.31 E-value=2.2 Score=48.75 Aligned_cols=214 Identities=11% Similarity=0.011 Sum_probs=128.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-----ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-----IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD- 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-----~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld- 1119 (1332)
.+.+++|.+.+..|... ...+.|...++..... ....+....+....+++...+..|+. -...+.|.++++.
T Consensus 108 ~v~~~~~sp~g~~lasg-~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACG-GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-ASGDGTCALWDVES 185 (354)
T ss_dssp CCCEEEECTTSSEEEEE-STTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE-EETTSEEEEEETTT
T ss_pred CEEEEEECCCCCEEEEe-eCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE-EeCCCcEEEEeCCC
Confidence 35788999988766544 4677787777652211 11122223345677888876666654 4456789999987
Q ss_pred CceEEEEecCCCCceEEEEcCC-CcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1120 GQHKKILVNDLMEPLAIAVYPR-RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1120 G~~~~~~~~~~~~P~~iavdp~-~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
|+....+..-......+++.|. .|.++++-... +.|..-++........+...-...+.+++.++++.|.-+
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~- 258 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG- 258 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEE-
Confidence 5544445443345678888875 35555654433 567777876555444444333557788998877766554
Q ss_pred cCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCe
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDF 1274 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~ 1274 (1332)
...+.|...|+.......+.. ......+++ . .++.+..+-...+.|...+..++ .....+......+
T Consensus 259 s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----s-~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v 329 (354)
T 2pbi_B 259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDF-----S-LSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRV 329 (354)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE-----C-TTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCE
T ss_pred eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE-----e-CCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcE
Confidence 567789988886543333332 123456666 2 23444555557789999998777 5444444333333
Q ss_pred eeE
Q psy5806 1275 LNI 1277 (1332)
Q Consensus 1275 ~~i 1277 (1332)
..+
T Consensus 330 ~~l 332 (354)
T 2pbi_B 330 STL 332 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=83.79 Aligned_cols=32 Identities=34% Similarity=0.865 Sum_probs=30.7
Q ss_pred CceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 18 ~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.+|+|. +|+||+..|+|||+.||.|+|||.+|
T Consensus 121 ~~F~C~-~g~ci~~~~~c~g~~dC~d~sde~~C 152 (913)
T 3t5o_A 121 NKFRCD-SGRCIARKLECNGENDCGDNSDERDC 152 (913)
T ss_dssp SEEECT-TSCEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred cccccC-CCceEccceecCCcccCCCccccccC
Confidence 579998 89999999999999999999999999
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.25 Score=56.00 Aligned_cols=202 Identities=6% Similarity=-0.093 Sum_probs=114.3
Q ss_pred ceEEEEEeCCCcEEEEEeCC---CCeEEEEECCCCCCceeEeecCCCCceeeEEEecC--CeEEEEcCCCceEEEEeeCC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMR---SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVA--NNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~---~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~--~~LY~td~~~~~I~v~~ldG 1120 (1332)
.+.+++|.+.+..+..+... .+.|+..++.++................+++.+.. +++.++-...+.|.++++..
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence 36788999988777766544 78888888774433322222233456778887663 34444545567899999974
Q ss_pred c--eEEEEecCCCCceEEE------EcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEEecCCC----CcceEE-
Q psy5806 1121 Q--HKKILVNDLMEPLAIA------VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLVEEDLA----FPNELA- 1186 (1332)
Q Consensus 1121 ~--~~~~~~~~~~~P~~ia------vdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~~~~l~----~p~gla- 1186 (1332)
. ....+..-......++ ++|....|+..... +.|...++.... ....+..... ....++
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 100 PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 3 3333443334566774 45644455544432 457777776544 2233321111 333455
Q ss_pred ---EecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1187 ---IDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1187 ---iD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.++++.|+.+ ...+.|...|+.......... .....++++ ++....+++|+ +-...+.|...+..++
T Consensus 173 ~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 173 GNAYNQEERVVCAG-YDNGDIKLFDLRNMALRWETNIKNGVCSLEF--DRKDISMNKLV-ATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp ECCCC-CCCEEEEE-ETTSEEEEEETTTTEEEEEEECSSCEEEEEE--SCSSSSCCEEE-EEESTTEEEEEEEEEE
T ss_pred EeccCCCCCEEEEE-ccCCeEEEEECccCceeeecCCCCceEEEEc--CCCCCCCCEEE-EECCCCeEEEEeCcCC
Confidence 44556555554 466789999997655433333 556677888 11100334444 4456788888777654
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0017 Score=73.06 Aligned_cols=41 Identities=32% Similarity=0.848 Sum_probs=37.4
Q ss_pred cCCCcCC-CCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 663 THPCNEN-NGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 663 ~~pC~~~-nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
.|.|..+ ||+|+|+|...++ +|+|.|+.||.|..|+++|.+
T Consensus 2 ~~eC~~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~d~~sC~p 43 (283)
T 3f1s_B 2 KNECHPERTDGCQHFCLPGQE-SYTCSCAQGYRLGEDHKQCVP 43 (283)
T ss_dssp -CCCCSSCSSSCSSBCCCCTT-SCCCBCCTTEEECTTSSCEEE
T ss_pred CCccCCCCCCCCCCEeeCCCC-CeEecCCCCcccCCCCCcccc
Confidence 4789888 9999999998877 899999999999999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.96 Score=50.89 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=121.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|.+.++.|+-.. ..+.|+..++.++.....+. ........+++++.+..| ++-...+.|.++++.+.....
T Consensus 67 ~v~~~~~s~dg~~l~s~s-~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~s~D~~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 67 IVQDCTLTADGAYALSAS-WDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQCLAT 143 (319)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEE-EEEETTSCEEEEETTSCEEEE
T ss_pred cEEEEEECCCCCEEEEEe-CCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEE
Confidence 356888998887766554 77889999987554333332 234467888998766655 455556789999999877666
Q ss_pred EecCCCCceEEEEcCCC-----cEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1126 LVNDLMEPLAIAVYPRR-----GLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~-----g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+.........+++.|.. +.++.+-... ..|..-++........+...-...+.+++.++++.|.-+ ..
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-~~ 216 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA-GK 216 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE-ET
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE-eC
Confidence 55444567888888842 2344444333 467777776544433333333456788999877766654 46
Q ss_pred CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1201 NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|...|+........+. .....+|++ .+.+.+|..+. .+.|...+..++
T Consensus 217 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----sp~~~~la~~~--~~~i~v~~~~~~ 268 (319)
T 3frx_A 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAF-----SPNRYWLAAAT--ATGIKVFSLDPQ 268 (319)
T ss_dssp TCEEEEEETTTTEEEEEEECCSCEEEEEE-----CSSSSEEEEEE--TTEEEEEEETTE
T ss_pred CCeEEEEECCCCcEEEEecCCCcEEEEEE-----cCCCCEEEEEc--CCCcEEEEeCcC
Confidence 6789988887544333333 445677777 23344454443 344555555443
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=62.05 Aligned_cols=39 Identities=28% Similarity=0.648 Sum_probs=35.5
Q ss_pred ccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 394 SHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 394 n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
++|. +++|+|.|++..++|+|.|+.||+|..++++|+..
T Consensus 55 ~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~ 95 (114)
T 1aut_L 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95 (114)
T ss_dssp SSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred CcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcC
Confidence 5787 78999999999999999999999999999999753
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=1.3 Score=48.92 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=126.0
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCce
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~ 1092 (1332)
+|+....+..|+...+...........+.. ...+..++++ ++.|+.. ...+.|...+ . +.... ........+.
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~~~d-~-~~~~~-~~~~~~~~v~ 146 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISG-SWDKTAKVWK-E-GSLVY-NLQAHNASVW 146 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEE-ETTSEEEEEE-T-TEEEE-EEECCSSCEE
T ss_pred EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEE-eCCCCEEEEc-C-CcEEE-ecccCCCcee
Confidence 444444333266566654432222222222 2345677774 4445444 4678888887 2 22222 2223444667
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec-CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
.+++....+++.++-...+.|.+++. ++....+.. .......++++| .+.|+... .. +.|...++.....
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~-~d------g~i~i~d~~~~~~ 217 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVD-DGHFISCS-ND------GLIKLVDMHTGDV 217 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEET-TEEEEEECSSCSSCEEEEEEEE-TTEEEEEE-TT------SEEEEEETTTCCE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEec-CceEEEEeccCcccEEEEEEcC-CCeEEEcc-CC------CeEEEEECCchhh
Confidence 78887644555555556678888883 333333333 445678899998 45544333 32 5688888865554
Q ss_pred EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
...+...-.....+++.+++ +|+ +-...+.|...|+........+. .....+|++ ..++.+ ++-...+.
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~------~~~~~~-~~~~~dg~ 288 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC------MSNGDI-IVGSSDNL 288 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEE-EEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE------CTTSCE-EEEETTSC
T ss_pred hhhhhcCCceEEEEEEecCC-CEE-EEecCCEEEEEECCCCceeEEEeccCceEEEEEE------ccCCCE-EEEeCCCc
Confidence 44444344567789998876 444 44567889999986444333333 445677887 223343 34556788
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
|...+..++
T Consensus 289 i~iw~~~~~ 297 (313)
T 3odt_A 289 VRIFSQEKS 297 (313)
T ss_dssp EEEEESCGG
T ss_pred EEEEeCCCC
Confidence 888887665
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=67.08 Aligned_cols=40 Identities=33% Similarity=0.779 Sum_probs=35.1
Q ss_pred ccccCC--CCc---ceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 392 YQSHCA--PKV---CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 392 ~~n~C~--~g~---CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
..++|. ++. |+|.|.+.+++|+|.|+.||+|..|+++|++
T Consensus 123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~ 167 (170)
T 1szb_A 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167 (170)
T ss_dssp ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred ccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCcccc
Confidence 457898 333 9999999999999999999999999999964
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0017 Score=62.08 Aligned_cols=41 Identities=34% Similarity=0.752 Sum_probs=37.9
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.++|..+||+|+|.|+.++++|+|.|+.||.+..++++|..
T Consensus 54 ~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~ 94 (114)
T 1aut_L 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94 (114)
T ss_dssp SSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred CCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCc
Confidence 36898889999999999999999999999999999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.20 E-value=3.9 Score=50.63 Aligned_cols=311 Identities=9% Similarity=-0.023 Sum_probs=149.1
Q ss_pred CCCccceeEecCCCeEEEEeCCCCeEEEEeCC-CCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec
Q psy5806 781 LNRTESIAVDAIGRKIYWTDMNAQTIMVSDID-GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859 (1332)
Q Consensus 781 ~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld-G~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~ 859 (1332)
-..+..+++++.++.|..+.. +.|.+.++. ++...++. .-......+++.|...+|.-... . ..|..-++
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~--~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~--d----~~v~lWd~ 88 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNG--TSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDV--H----GNVRIWDT 88 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEET--TEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEET--T----SEEEEEES
T ss_pred cCceeEEeeCCCCCEEEeCCC--CEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeC--C----CCEEEeEC
Confidence 345777889988887776653 488888885 55444443 22245688999997434433332 2 34555555
Q ss_pred C-CCCcEE-Eecc-cccCceeEEeCCCCCeEEEEeCCC---CeEEEEccCCCceeEEeccCCcceEEEEeCC--EEEEEe
Q psy5806 860 D-GTNRAV-FETE-VIWPSCLAIDYSDNPKLYWVDTSK---HTIEYKTLATGRAKRAYAVQSHPYTLTVLDY--YVYWTD 931 (1332)
Q Consensus 860 d-G~~~~~-l~~~-l~~P~gl~iD~~~~~~lYw~d~~~---~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~--~iywtD 931 (1332)
. +..... .... -.....+++++++ ++|..+.... +.|...+ .|.....+........++++..+ ++..+-
T Consensus 89 ~~~~~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 89 TQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CCCcceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEee-CCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 3 332211 1122 3445688999888 7776665433 2444444 23322222111222344554422 223333
Q ss_pred CCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccC
Q psy5806 932 VQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRT 1011 (1332)
Q Consensus 932 ~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p 1011 (1332)
..++.|..-+..+++.+. .+. ++.. ....+. --|.|-
T Consensus 167 s~D~~v~lwd~~~~~~~~---------~l~-----~H~~-------~V~~v~---------fspdg~------------- 203 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKS---------TFG-----EHTK-------FVHSVR---------YNPDGS------------- 203 (611)
T ss_dssp ETTSCEEEEETTTBEEEE---------EEC-----CCSS-------CEEEEE---------ECTTSS-------------
T ss_pred eCCCeEEEEECCCCeEee---------eec-----cccC-------ceEEEE---------ECCCCC-------------
Confidence 333333332222221111 000 0000 000000 012221
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcc-----cccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVT-----LPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM 1086 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~-----~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~ 1086 (1332)
+|+....+..|+..++........+ ........+.+++|++.++.|.-.. ..++|+..++.++.....+...
T Consensus 204 --~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s-~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 204 --LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp --EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECC
T ss_pred --EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe-CCCeEEEEeCCCCceeeeecCC
Confidence 2222222221444443322110000 0001223578999999887665544 7788999998754433333211
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEe
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSH 1149 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd 1149 (1332)
.......+++.|.++.| ++-...+.|.+.++..... ..+..-.....+|+++|...+|+-+.
T Consensus 281 ~~~~~~~~~~~~~~~~l-~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQAL-VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp SSGGGCEEEEEECSSCE-EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCccceeEEEEEcCCEE-EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 11112234555545555 4444566788888874433 33433345678999999666665544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.19 E-value=2.7 Score=48.71 Aligned_cols=330 Identities=10% Similarity=0.046 Sum_probs=160.4
Q ss_pred CccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCC
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGT 862 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~ 862 (1332)
....+++++.++.|+.... .+.|.+.++........+. . .....++.-+..|.++.+-.. . ..|...++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~-d~~v~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~-d----g~i~iwd~~~~ 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARL-DGHDFLFNTIIRDGSKMLK-R-ADYTAVDTAKLQMRRFILGTT-E----GDIKVLDSNFN 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEE-TTEEEEEECCSEETTTTSC-S-CCEEEEEEECSSSCEEEEEET-T----SCEEEECTTSC
T ss_pred cccceeeeecCCeEEEEEc-CCcEEEEEecccceeeEEe-c-CCceEEEEEecCCCEEEEEEC-C----CCEEEEeCCCc
Confidence 3557889888888776654 4578887775432111111 1 122333333333544443322 2 35666666644
Q ss_pred CcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC-CCceeEEeccCCcceEEEEe--CCEEEEEeCCCCEEE
Q psy5806 863 NRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA-TGRAKRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIY 938 (1332)
Q Consensus 863 ~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d-G~~~~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~ 938 (1332)
........ ......+++.+.+ +.|+.+ ...+.|...++. |.....+........++++. +..|+ +-..++.|.
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~ 206 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSG-EALISS-SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIR 206 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTS-SEEEEE-ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE-EEETTSCEE
T ss_pred ceeeecccccCccEEEEECCCC-CEEEEE-eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE-EEcCCCcEE
Confidence 33333223 4556688888877 555544 445778888875 44444443333344667776 33444 444556666
Q ss_pred EEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc-cCc-ceEE
Q psy5806 939 RANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS-RTR-EFLL 1016 (1332)
Q Consensus 939 ~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~-~p~-~~ll 1016 (1332)
.-+..+++.+..... .... .++...+++....... -........++.. .|. .+|+
T Consensus 207 iwd~~~~~~~~~~~~---------~~~~---------~~~v~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~ 263 (420)
T 3vl1_A 207 LWECGTGTTIHTFNR---------KENP---------HDGVNSIALFVGTDRQ-----LHEISTSKKNNLEFGTYGKYVI 263 (420)
T ss_dssp EEETTTTEEEEEECB---------TTBT---------TCCEEEEEEEECCCSS-----CGGGCCCCCCTTCSSCTTEEEE
T ss_pred EeECCCCceeEEeec---------CCCC---------CCCccEEEEecCCcce-----eeecccCcccceEEcCCCCEEE
Confidence 666666643332110 0000 0000001110000000 0000000011111 122 2344
Q ss_pred EEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ceeEeecCCCCceeeE
Q psy5806 1017 YTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IKPIPLMNDTIRDNFV 1095 (1332)
Q Consensus 1017 ~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~~i~~~~~~~p~glA 1095 (1332)
....+..|+..++...... ...+......+..++|++.++.++++-...+.|+..++.++.. ...+..........++
T Consensus 264 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 342 (420)
T 3vl1_A 264 AGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY 342 (420)
T ss_dssp EEETTSCEEEEETTTCCEE-EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred EEcCCCeEEEEECCCCcee-EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence 3333332666666433211 1111112235789999998873444444778999999886544 2333322233445555
Q ss_pred EEecCCeEEEEcCCCceEEEEeeCCc----------eEEEEecCCCCceEEEEcCCCc---EEEEEe
Q psy5806 1096 IDWVANNIYYIDSQMHTINVARSDGQ----------HKKILVNDLMEPLAIAVYPRRG---LLFYSH 1149 (1332)
Q Consensus 1096 vDw~~~~LY~td~~~~~I~v~~ldG~----------~~~~~~~~~~~P~~iavdp~~g---~Lywtd 1149 (1332)
.. .+.++++-...+.|.++++... ....+.........+++.|... .|+.+.
T Consensus 343 ~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 343 FA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp EE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred eC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 44 5667777777889999998642 1112223334567777777544 455554
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0018 Score=61.07 Aligned_cols=40 Identities=28% Similarity=0.657 Sum_probs=34.5
Q ss_pred ccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 392 YQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 392 ~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
..|||. +++|+|.|++.+++|+|.|+.||++. ++++|.+.
T Consensus 28 d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~di 69 (107)
T 2w2n_E 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDI 69 (107)
T ss_dssp SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC-
T ss_pred cCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccc
Confidence 579998 57999999999999999999999985 67888754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=1.1 Score=50.89 Aligned_cols=199 Identities=7% Similarity=-0.022 Sum_probs=117.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE-eecCCCCceeeEEEec--CCeEEEEcCCCceEEEEeeCCce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMNDTIRDNFVIDWV--ANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~~~p~glAvDw~--~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
.+..++|++.++.|..+. ..+.|+..++..++..... +.........|++... ++.|+ +-...+.|.+++++...
T Consensus 13 ~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA-SCSYDGKVLIWKEENGR 90 (379)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTSCEEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEE-CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEE-EeccCCEEEEEEcCCCc
Confidence 367899999888777665 5677888776533322221 2122335667777644 45554 44456789999998553
Q ss_pred ---EEEEecCCCCceEEEEcCC--CcEEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcceEEEecC-----
Q psy5806 1123 ---KKILVNDLMEPLAIAVYPR--RGLLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPNELAIDFK----- 1190 (1332)
Q Consensus 1123 ---~~~~~~~~~~P~~iavdp~--~g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~glaiD~~----- 1190 (1332)
...+.........|+++|. ..+|+.+... +.|...++.... ....+.........+++.+.
T Consensus 91 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 91 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 2223334456899999997 4455555432 467777775542 22233333345667888873
Q ss_pred -------CCEEEEEEcCCCeEEEEecCCCc-eEEEE-e----ecccceEEEecCCccccc--cEEEEEECCCCEEEEEEe
Q psy5806 1191 -------QRRLFWADSTNKRIEYCDFFGRS-RKIVI-S----KVAPYGLSVRQSPGKAFI--VELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1191 -------~~~LY~~d~~~~~I~~~d~dG~~-~~~~~-~----~~~P~glav~~~~~~~~~--~~lYwtd~~~~~V~~~~~ 1255 (1332)
++.++++-...+.|...|+.... ...+. . .....+|++ .+.+ +.+..+-...+.|...+.
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~-----sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-----SPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE-----CCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE-----CCCCCCCCeEEEEeCCCEEEEEeC
Confidence 34444454567889998886443 22222 2 344567777 2221 344555556788888887
Q ss_pred cCC
Q psy5806 1256 KSD 1258 (1332)
Q Consensus 1256 ~~g 1258 (1332)
.++
T Consensus 239 ~~~ 241 (379)
T 3jrp_A 239 DNE 241 (379)
T ss_dssp SST
T ss_pred CCC
Confidence 765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.12 E-value=0.21 Score=64.00 Aligned_cols=199 Identities=7% Similarity=0.020 Sum_probs=112.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC------------------CCceeeEEEecCCeEEEEc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND------------------TIRDNFVIDWVANNIYYID 1107 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~------------------~~p~glAvDw~~~~LY~td 1107 (1332)
.....+|+|.+++|.++. .+.|+..++.+|.. ..+...+. +...+++..+.++.|.++.
T Consensus 113 ~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~-~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 113 NTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp TEEEEEECSSTTCEEEEE--TTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cceeeEECCCCCEEEEEE--CCeEEEEECCCCce-EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 467888999988888774 46788877664332 22221111 2223577777788776652
Q ss_pred C--C---------------------------------CceEEEEeeCC---c---eEEEEec------CCCCceEEEEcC
Q psy5806 1108 S--Q---------------------------------MHTINVARSDG---Q---HKKILVN------DLMEPLAIAVYP 1140 (1332)
Q Consensus 1108 ~--~---------------------------------~~~I~v~~ldG---~---~~~~~~~------~~~~P~~iavdp 1140 (1332)
. . ..+|.++++++ . ....+.. .......++..|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 1 1 01456667765 3 2222321 122345677888
Q ss_pred CCcEE-EEEecCCCCCCCCCcEEEEecCCCc-------eEEEE-ecCCCC-----cceEEEecCCCEEE-EEEc--CCCe
Q psy5806 1141 RRGLL-FYSHWGLYDNSPTTKIEKVYLDGSY-------RTVLV-EEDLAF-----PNELAIDFKQRRLF-WADS--TNKR 1203 (1332)
Q Consensus 1141 ~~g~L-ywtd~~~~~~~~~~~I~r~~ldG~~-------~~~l~-~~~l~~-----p~glaiD~~~~~LY-~~d~--~~~~ 1203 (1332)
....+ |+.+... ....|...++++.. ...++ ...-.+ +...++.++++.|+ |.-. +...
T Consensus 270 dg~~~~~~~~r~~----~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~ 345 (740)
T 4a5s_A 270 QERISLQWLRRIQ----NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRH 345 (740)
T ss_dssp TTEEEEEEEESST----TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEE
T ss_pred CCeEEEEEeCCCC----CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceE
Confidence 54423 3344332 23468888887655 22232 211111 34678888988877 6632 3456
Q ss_pred EEEEecCCCceEEEEe-ecccceE-EEecCCccccccEEEEEECC------CCEEEEEEecCC
Q psy5806 1204 IEYCDFFGRSRKIVIS-KVAPYGL-SVRQSPGKAFIVELYWTDWE------AMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~-~~~P~gl-av~~~~~~~~~~~lYwtd~~------~~~V~~~~~~~g 1258 (1332)
|..++.+|...+.+.. ......+ .. ++++||++-.. ...|++++..++
T Consensus 346 l~~~~~~~~~~~~lT~g~~~v~~~~~~-------d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 346 ICYFQIDKKDCTFITKGTWEVIGIEAL-------TSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp EEEEETTCSSCEESCCSSSCEEEEEEE-------CSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred EEEEECCCCceEecccCCEEEEEEEEE-------eCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 9999999877665554 2222222 35 47888888754 357888876544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.28 Score=62.28 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=115.6
Q ss_pred EEEEEeCCCcEEEEEeCCC------------CeEEEEECCCCCCceeEeecCCC----CceeeEEEecCCeEEEEcC---
Q psy5806 1048 IFFDYHYSKNLIYFADMRS------------GNLRTFDMSDSTRIKPIPLMNDT----IRDNFVIDWVANNIYYIDS--- 1108 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~------------~~I~~~~l~~g~~~~~i~~~~~~----~p~glAvDw~~~~LY~td~--- 1108 (1332)
.+++|. .++.||++.... ..|++.++..+....+.+..... .-.++++++.++.|+++..
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 356788 788888886442 35888887643332233322222 2346788888888877643
Q ss_pred CCceEEEEeeCCc--eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---EEEEecCCCCcc
Q psy5806 1109 QMHTINVARSDGQ--HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---TVLVEEDLAFPN 1183 (1332)
Q Consensus 1109 ~~~~I~v~~ldG~--~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---~~l~~~~l~~p~ 1183 (1332)
..+.|.+.++++. ..+.+......-... +++..+.||+..... .+..+|+++++++... +.++...-..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-- 330 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD---APNRRLVTVDAANPGPAHWRDLIPERQQV-- 330 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEETTSCCGGGCEEEECCCSSC--
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCCCCccccEEEecCCCCE--
Confidence 2357888888643 233343333332333 566677887765332 2357899999987654 5565533222
Q ss_pred eEEEecCCCEEEEEEcCCC--eEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEEC---CCCEEEEEEec
Q psy5806 1184 ELAIDFKQRRLFWADSTNK--RIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDW---EAMSVVIAREK 1256 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~~~--~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~---~~~~V~~~~~~ 1256 (1332)
+.+++.++.|+++....+ +|..++++|...+.+.- .....+++. +..++.|+++-. .-.+|++++..
T Consensus 331 -~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~-----~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 331 -LTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNG-----KHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp -EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCC-----CTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeec-----CCCCCEEEEEecCCCCCCEEEEEECC
Confidence 266666888888765543 78999999875444321 111112222 224455655532 23678888876
Q ss_pred CC
Q psy5806 1257 SD 1258 (1332)
Q Consensus 1257 ~g 1258 (1332)
++
T Consensus 405 ~g 406 (693)
T 3iuj_A 405 SG 406 (693)
T ss_dssp TC
T ss_pred CC
Confidence 65
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0017 Score=58.67 Aligned_cols=42 Identities=29% Similarity=0.759 Sum_probs=35.3
Q ss_pred CccccccCC--CCcce-eeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 389 QPNYQSHCA--PKVCS-HICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 389 qp~~~n~C~--~g~Cs-hlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+.+.++|. +..|. +.|++.+++|+|.|+.||++.+++++|.
T Consensus 42 ~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 42 NCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86 (86)
T ss_dssp SEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred ccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence 345678887 34576 6999999999999999999999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.95 Score=51.21 Aligned_cols=198 Identities=8% Similarity=-0.035 Sum_probs=116.2
Q ss_pred cceEEEEEeCCC---cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc
Q psy5806 1045 MSSIFFDYHYSK---NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~---~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~ 1121 (1332)
..+.+++|.+.. +.++++-...+.|...++.++.....+. .....+..|++.+..+++.++-...+.|.++++...
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 346788898773 3455555578899999987544333332 344567889998734455555555778999999744
Q ss_pred -eEEEE---ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe---------------------
Q psy5806 1122 -HKKIL---VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE--------------------- 1176 (1332)
Q Consensus 1122 -~~~~~---~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~--------------------- 1176 (1332)
....+ ......+..|+++|...+|+.+... +.|...++........+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF 221 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCC-------CCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence 33334 2344568999999966566555432 457777775432111000
Q ss_pred -------cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCce------------EEEEe----ecccceEEEecCCc
Q psy5806 1177 -------EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR------------KIVIS----KVAPYGLSVRQSPG 1233 (1332)
Q Consensus 1177 -------~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~------------~~~~~----~~~P~glav~~~~~ 1233 (1332)
..-.....++++ ++ ++++-...+.|...|+..... ..+.. ......|++
T Consensus 222 ~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 293 (366)
T 3k26_A 222 PDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF----- 293 (366)
T ss_dssp CSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC-----
T ss_pred CccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE-----
Confidence 012334566766 44 444555678888888764322 22222 233455555
Q ss_pred ccc-ccEEEEEECCCCEEEEEEecCC
Q psy5806 1234 KAF-IVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1234 ~~~-~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+. ++.+.++-...+.|...+..++
T Consensus 294 s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EECTTSSEEEEECTTSCEEEEECCSS
T ss_pred cCCCCCcEEEEEecCCcEEEEECCCC
Confidence 112 1344444457788999998776
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0026 Score=64.82 Aligned_cols=40 Identities=30% Similarity=0.611 Sum_probs=35.4
Q ss_pred ccccCC---CCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 392 YQSHCA---PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 392 ~~n~C~---~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
..++|. ++.|+|.|.+.+++|+|.|+.||+|..|+++|+.
T Consensus 116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp ECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 357887 3579999999999999999999999999999964
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0025 Score=57.60 Aligned_cols=44 Identities=27% Similarity=0.729 Sum_probs=38.2
Q ss_pred CCccccccCCCCcceeeeccCCCceEEeCC--CCceecCCCCCcCC
Q psy5806 388 RQPNYQSHCAPKVCSHICLPNKHRFTCQCP--LGLTLSPDNKSCSE 431 (1332)
Q Consensus 388 ~qp~~~n~C~~g~CshlCl~~~~~~~C~C~--~G~~L~~d~~tC~~ 431 (1332)
+.+...++|..+.|.+.|++.+++|+|.|| .||.+..|+++|++
T Consensus 40 ~~C~dideC~~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~d 85 (87)
T 1z6c_A 40 KSCEDIDECSENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85 (87)
T ss_dssp TEEECCCHHHHSCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBC
T ss_pred CcCCCcCeeCCCCCCCEEEccCCCEEEECCCCcCCcccCCCCcceE
Confidence 445567899877899999999999999995 89999999999975
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.63 Score=59.01 Aligned_cols=181 Identities=10% Similarity=0.076 Sum_probs=102.7
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCC------------CeEEEEECCCCCCceeEeecCC---
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS------------GNLRTFDMSDSTRIKPIPLMND--- 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~------------~~I~~~~l~~g~~~~~i~~~~~--- 1088 (1332)
|+.+++++..... ...++... ..+++|.+.++.||++.... ..|++.++.++....+++....
T Consensus 149 i~v~dl~tg~~~~-~~~~~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 149 LHVIDVDSGEWSK-VDVIEGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp EEEEETTTCCBCS-SCCBSCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred EEEEECCCCCCcC-CcccCccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 7777776543220 11223222 15788999999999987533 2399999874433223332221
Q ss_pred CCceeeEEEecCCeEEEEcCC---CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEE-ecCCCCCCCCCcEEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ---MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYS-HWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~---~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywt-d~~~~~~~~~~~I~r~ 1164 (1332)
....++++++.++.|+++... ...|.+++..+...+.+..........+. +..+ ||+. +++. ...+|+++
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~----~~~~l~~~ 300 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGA----PRQRVFEV 300 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTC----TTCEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCC----CCCEEEEE
Confidence 234578888888888876433 33566666543333333333333344333 4455 6555 4331 35789999
Q ss_pred ecCCCce---EEEEecC-CCCcceEEEecCCCEEEEEEcCC--CeEEEEecCCCce
Q psy5806 1165 YLDGSYR---TVLVEED-LAFPNELAIDFKQRRLFWADSTN--KRIEYCDFFGRSR 1214 (1332)
Q Consensus 1165 ~ldG~~~---~~l~~~~-l~~p~glaiD~~~~~LY~~d~~~--~~I~~~d~dG~~~ 1214 (1332)
++++... +.++... -....+++++ +++|+++.... .+|+.++++|...
T Consensus 301 d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 301 DPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp BTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred eCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 9977552 4555432 1224556666 67788776543 4577788877643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.88 E-value=1.4 Score=50.44 Aligned_cols=172 Identities=13% Similarity=0.084 Sum_probs=106.3
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEec-CCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWV-ANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
+.++.|.+.+..|+-+. ..++|+..++..+.....+. ........+++.+. .+++.++-...+.|.++++. |+...
T Consensus 157 v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 157 LSACSFTNSDMQILTAS-GDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp EEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 56888888887776554 67889999987554333332 22334566777654 34555666667789999987 55444
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC--CCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED--LAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~--l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+..-.....+|+++|....| .+-... +.|...++.......+.... ......+++.+++..|+.. ...+
T Consensus 235 ~~~~h~~~v~~v~~~p~~~~l-~s~s~D------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-~~d~ 306 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSGDAF-ASGSDD------ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG-YNDY 306 (354)
T ss_dssp EECCCSSCEEEEEECTTSSEE-EEEETT------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTS
T ss_pred EecCCCCCeEEEEEeCCCCEE-EEEeCC------CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE-ECCC
Confidence 454434567899999955444 444332 45777777654443333321 1234577888777766655 4667
Q ss_pred eEEEEecC-CCceEEEEe-ecccceEEE
Q psy5806 1203 RIEYCDFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1203 ~I~~~d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
.|...|+. |.....+.. .....+|++
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~ 334 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVSTLRV 334 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEE
T ss_pred cEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 89988885 433333322 455667777
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0032 Score=62.72 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=34.1
Q ss_pred cCCCCcceeeeccCCC-ceEEeCCCCceecCCCCCcCCC
Q psy5806 395 HCAPKVCSHICLPNKH-RFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 395 ~C~~g~CshlCl~~~~-~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
+|.+++|+|.|++..+ +|+|.|+.||+|..||++|...
T Consensus 92 ~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~ 130 (142)
T 2c4f_L 92 VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 130 (142)
T ss_dssp TTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEES
T ss_pred cCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCC
Confidence 3458899999999999 9999999999999999999754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=2.2 Score=48.01 Aligned_cols=117 Identities=9% Similarity=-0.046 Sum_probs=74.4
Q ss_pred cceEEEEEeCCC--cEEEEEeCCCCeEEEEECCCCCCce-eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc
Q psy5806 1045 MSSIFFDYHYSK--NLIYFADMRSGNLRTFDMSDSTRIK-PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~--~~lY~sd~~~~~I~~~~l~~g~~~~-~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~ 1121 (1332)
..+..++|++.+ +.+.++-...+.|+..++....... .........+..|++.+.++.|+.+. ..+.|.++++...
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWDLSSN 118 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-CCCcEEEEEcCCC
Confidence 356899999986 4555555577889888877422222 33333455788999998677776554 4678999999865
Q ss_pred eEEEEecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1122 HKKILVNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
....+.........+++ +| .+.++++-... +.|...++...
T Consensus 119 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~ 161 (368)
T 3mmy_A 119 QAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWD------KTLKFWDTRSS 161 (368)
T ss_dssp EEEEEEECSSCEEEEEEEECS-SCEEEEEEETT------SEEEEECSSCS
T ss_pred CceeeccccCceEEEEEEeCC-CCCEEEEccCC------CcEEEEECCCC
Confidence 54444334456788998 77 44444443322 35666665433
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.56 Score=53.16 Aligned_cols=158 Identities=9% Similarity=0.045 Sum_probs=100.6
Q ss_pred ceEEEEEeCC----CcEEEEEeCCCCeEEEEECCCCCCceeEeec----CCCCceeeEEEecC---CeEEEEcCCCceEE
Q psy5806 1046 SSIFFDYHYS----KNLIYFADMRSGNLRTFDMSDSTRIKPIPLM----NDTIRDNFVIDWVA---NNIYYIDSQMHTIN 1114 (1332)
Q Consensus 1046 ~~~~id~d~~----~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~----~~~~p~glAvDw~~---~~LY~td~~~~~I~ 1114 (1332)
.+.+++|++. +..++.+. ..+.|...++..+.....+... .......+++.+.. +.+.++-...+.|.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred ceEEEEEecccCCCCceEEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 3578888873 44444444 5568888887644433333211 12456788888763 34555555677999
Q ss_pred EEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE---ecCCCCcceEEEecC
Q psy5806 1115 VARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV---EEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1115 v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~---~~~l~~p~glaiD~~ 1190 (1332)
++++. ++....+.........|+++|..+.++.+-... +.|...++........+ ...-..+..|+++++
T Consensus 99 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 99 IINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp EECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred EEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99987 554444554456789999999555555554333 46888888765544444 223356778899988
Q ss_pred CCEEEEEEcCCCeEEEEecCC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
++.|+.+. ..+.|...|+..
T Consensus 173 ~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 173 GEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp SSEEEEEE-TTSCEEEEESCS
T ss_pred CCEEEEec-CCCCEEEEECCC
Confidence 77777664 567898888864
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=5.5 Score=49.01 Aligned_cols=64 Identities=8% Similarity=-0.142 Sum_probs=38.9
Q ss_pred CeEEEEeCCCCeEEEEcc--CCCceeEEeccC-----------CcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEE
Q psy5806 885 PKLYWVDTSKHTIEYKTL--ATGRAKRAYAVQ-----------SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIV 949 (1332)
Q Consensus 885 ~~lYw~d~~~~~I~~~~~--dG~~~~~l~~~~-----------~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~ 949 (1332)
++||++....+.+..+|. +|..+-...... ....++++.++.||.... .+.++.++..+|+++.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-NGHLLALDAKTGKINW 139 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-CCEEEEEECCCCCEEE
Confidence 466666543456666665 444332221110 011356788999999854 5789999999996554
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.003 Score=65.11 Aligned_cols=41 Identities=29% Similarity=0.794 Sum_probs=37.3
Q ss_pred CCcccCCCCC---CccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 969 PNACGSNNGG---CSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 969 ~n~C~~~nGg---CshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.++|...+++ |+|.|..+++++.|.|+.||.|..|+++|++
T Consensus 124 i~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~ 167 (170)
T 1szb_A 124 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167 (170)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred cCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCcccc
Confidence 5789887776 9999999999999999999999999999974
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=95.78 E-value=2.8 Score=53.46 Aligned_cols=196 Identities=11% Similarity=0.042 Sum_probs=116.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCC----eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC-----------
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSG----NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM----------- 1110 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~----~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~----------- 1110 (1332)
...++.+++++++|.++....| .|+.+++++|....... ... ...+++..+. +.||++....
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE-ESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc-eeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 3567889999998877654333 59999988554332211 111 1245666666 7888875432
Q ss_pred --ceEEEEeeCCce--EEEEecCCCC---ceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC--c-eEEEEecCCC
Q psy5806 1111 --HTINVARSDGQH--KKILVNDLME---PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS--Y-RTVLVEEDLA 1180 (1332)
Q Consensus 1111 --~~I~v~~ldG~~--~~~~~~~~~~---P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~--~-~~~l~~~~l~ 1180 (1332)
..|.+.++.+.. ...+...... -.+++++|...+|+++.... ......|+..++++. . .+.|... ..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~l~~~-~~ 317 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG--TDPVNTVHVARVTNGKIGPVTALIPD-LK 317 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT--TCSCCEEEEEEEETTEECCCEEEECS-SS
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc--CCCcceEEEEECCCCCCcccEEecCC-CC
Confidence 247777775332 2233333232 46889999777888776432 112468999999776 4 4444432 22
Q ss_pred CcceEEEecCCCEEEEEEcC---CCeEEEEecCC--CceEEEEe--ecccceEEEecCCccccccEEEEEECCCC--EEE
Q psy5806 1181 FPNELAIDFKQRRLFWADST---NKRIEYCDFFG--RSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVV 1251 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~---~~~I~~~d~dG--~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~ 1251 (1332)
.... .+++++++||+.... +.+|..+++++ ...+.++. .....+++. .+++|+++-...+ +|+
T Consensus 318 ~~~~-~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~-------~~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 318 AQWD-FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI-------AGNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SCEE-EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE-------EBTEEEEEEEETTEEEEE
T ss_pred ceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE-------ECCEEEEEEEECCEEEEE
Confidence 2122 245788999887542 56799999987 34455554 223446677 6778887765443 455
Q ss_pred EEEe
Q psy5806 1252 IARE 1255 (1332)
Q Consensus 1252 ~~~~ 1255 (1332)
.++.
T Consensus 390 ~~~~ 393 (741)
T 1yr2_A 390 AFDL 393 (741)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6654
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0032 Score=63.01 Aligned_cols=44 Identities=27% Similarity=0.723 Sum_probs=38.1
Q ss_pred CccccccCC--CCcceeee-ccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 389 QPNYQSHCA--PKVCSHIC-LPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 389 qp~~~n~C~--~g~CshlC-l~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
.+...++|. +++|.|.| ++..++|+|.|+.||+|..||++|...
T Consensus 81 ~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~ 127 (146)
T 1x7a_L 81 NCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA 127 (146)
T ss_dssp TTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred cCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence 345568898 57899999 999999999999999999999999754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=95.71 E-value=2.6 Score=47.30 Aligned_cols=197 Identities=7% Similarity=0.020 Sum_probs=115.2
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc---e-eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cc
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI---K-PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQ 1121 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~---~-~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~ 1121 (1332)
+.+++|.+.+..+.++-...++|+..++...... . ..+.........+++...++.|+ +-...+.|.++++. |+
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~s~D~~v~~wd~~~~~ 98 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGE 98 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEE-EEeCCCEEEEEECCCCC
Confidence 5688888876555666667888877765421111 0 11112234567888987666665 44456789999997 54
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCC-----CEEEE
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQ-----RRLFW 1196 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~-----~~LY~ 1196 (1332)
....+..-......|+++|...+| .+-... ..|..-++.+.....+.. .......+++.+.. ..+.+
T Consensus 99 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~D------~~i~vwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 99 TYQRFVGHKSDVMSVDIDKKASMI-ISGSRD------KTIKVWTIKGQCLATLLG-HNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEE-EEEETT------SCEEEEETTSCEEEEECC-CSSCEEEEEECCC------CCEEE
T ss_pred eeEEEccCCCcEEEEEEcCCCCEE-EEEeCC------CeEEEEECCCCeEEEEec-cCCcEEEEEEccCCCCCCCccEEE
Confidence 444454444568899999955444 444333 456666777655443332 22344556665432 23445
Q ss_pred EEcCCCeEEEEecCCCceEEEE-e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1197 ADSTNKRIEYCDFFGRSRKIVI-S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~dG~~~~~~~-~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+-...+.|...|+......... . .....+|++ .+ ++.+..+-...+.|...+..++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~-----sp-~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA-----SP-DGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE-----CT-TSSEEEEEETTCEEEEEETTTT
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCC
Confidence 5566778888888644322222 2 445567777 22 3334445456678888887666
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.70 E-value=1.3 Score=49.40 Aligned_cols=199 Identities=11% Similarity=-0.049 Sum_probs=113.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe---ecCCCCceeeEEEec-CCeEEEEcCCCceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP---LMNDTIRDNFVIDWV-ANNIYYIDSQMHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~---~~~~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ldG~ 1121 (1332)
.+..++|++.++.|+.+. ..+.|+..++..+....... ......+..|++.+. .+++.++-...+.|.+++++..
T Consensus 13 ~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTT
T ss_pred ceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCC
Confidence 467899999887776654 67889888877544322221 223346778888764 2444455555678999999753
Q ss_pred ----------eEEEEecCCCCceEEEEcCC--CcEEEEEecCCCCCCCCCcEEEEecCCCceE-EEE-----e-------
Q psy5806 1122 ----------HKKILVNDLMEPLAIAVYPR--RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT-VLV-----E------- 1176 (1332)
Q Consensus 1122 ----------~~~~~~~~~~~P~~iavdp~--~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~-~l~-----~------- 1176 (1332)
....+........+|+++|. ..+|+.+.. . +.|...++...... .+. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-D------GILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-T------CEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-C------CcEEEecCCChHHhccccccccccccccccC
Confidence 12224334456889999996 444544443 2 45666665433311 100 0
Q ss_pred cCCCCcceEEEecC---CCEEEEEEcCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccc---cEEEEEECC
Q psy5806 1177 EDLAFPNELAIDFK---QRRLFWADSTNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFI---VELYWTDWE 1246 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~---~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~---~~lYwtd~~ 1246 (1332)
........+++.++ .+.|..+. ..+.+...+........+.. .....+|++ .+.+ ..++.+-..
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-----~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW-----APSIGRWYQLIATGCK 238 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE-----CCCSSCSSEEEEEEET
T ss_pred CcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecCCCCcceeEEEE-----CCCCCCcceEEEEEcC
Confidence 12234556777765 55555554 44455444443333322322 334567777 1222 156666667
Q ss_pred CCEEEEEEecCC
Q psy5806 1247 AMSVVIAREKSD 1258 (1332)
Q Consensus 1247 ~~~V~~~~~~~g 1258 (1332)
.+.|...+..++
T Consensus 239 dg~i~iwd~~~~ 250 (351)
T 3f3f_A 239 DGRIRIFKITEK 250 (351)
T ss_dssp TSCEEEEEEEEC
T ss_pred CCeEEEEeCCCC
Confidence 788888887664
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.65 E-value=1.1 Score=53.04 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=113.2
Q ss_pred Ccccccc-C-cc-eEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC
Q psy5806 1004 RRSCFSR-T-RE-FLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR 1079 (1332)
Q Consensus 1004 ~~tC~~~-p-~~-~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~ 1079 (1332)
..+|..- | .+ .|+....+..|+.-+++..... ......+ ...+.+|+|++.++.++++-...++|+..++. +..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~ 198 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNI 198 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCc
Confidence 3456543 3 33 3444444332666666544322 2222222 33467999998665555666678899999987 333
Q ss_pred ceeEeecCC--CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCC
Q psy5806 1080 IKPIPLMND--TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157 (1332)
Q Consensus 1080 ~~~i~~~~~--~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~ 1157 (1332)
...+..... .....++++..++.|. +-...+.|.+++++|+....+..-.....+|+++|....++.+-...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d----- 272 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVV-TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD----- 272 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEE-EECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT-----
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEE-EEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCc-----
Confidence 333332221 1345788887665554 44556789999998875544433345678999999777677665433
Q ss_pred CCcEEEEecCCCc-eEEEEe--cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC
Q psy5806 1158 TTKIEKVYLDGSY-RTVLVE--EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1158 ~~~I~r~~ldG~~-~~~l~~--~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG 1211 (1332)
..|..-++.... ...+.. ..-...+.++++++++.|.-+ ...+.|...|+..
T Consensus 273 -~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~ 327 (435)
T 4e54_B 273 -QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-DQKSEIRVYSASQ 327 (435)
T ss_dssp -SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-ESSSCEEEEESSS
T ss_pred -ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE-cCCCEEEEEECCC
Confidence 334444443222 111111 111234567788877777655 4667888888853
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0059 Score=61.09 Aligned_cols=42 Identities=31% Similarity=0.785 Sum_probs=38.1
Q ss_pred CCcccCCCCCCcccc-ccCCCCccccCCCCeeEccCCcccccc
Q psy5806 969 PNACGSNNGGCSHLC-LRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 969 ~n~C~~~nGgCshlC-l~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
.++|..++++|.|.| ..++++|+|.|+.||.|..|+++|...
T Consensus 85 ~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~ 127 (146)
T 1x7a_L 85 DATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA 127 (146)
T ss_dssp ECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEEC
T ss_pred CccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCC
Confidence 478998889999999 999999999999999999999999843
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.082 Score=67.39 Aligned_cols=222 Identities=7% Similarity=-0.037 Sum_probs=122.3
Q ss_pred cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC------------
Q psy5806 1021 FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND------------ 1088 (1332)
Q Consensus 1021 ~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~------------ 1088 (1332)
.. |+..+++...... ..++. ..+..++|+|.+++|.++. .+.|+..++.+|... .+...+.
T Consensus 90 ~~-i~~~d~~~g~~~~-~~~l~--~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v 162 (719)
T 1z68_A 90 AT-YYIYDLSNGEFVR-GNELP--RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWV 162 (719)
T ss_dssp EE-EEEEETTTTEECC-SSCCC--SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHH
T ss_pred eE-EEEEECCCCcccc-ceecC--cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccce
Confidence 44 7777776443200 01222 2356788999998888874 568888887643322 2221111
Q ss_pred ------CCceeeEEEecCCeEEEEcCC---------------------------------CceEEEEeeCCceEE---EE
Q psy5806 1089 ------TIRDNFVIDWVANNIYYIDSQ---------------------------------MHTINVARSDGQHKK---IL 1126 (1332)
Q Consensus 1089 ------~~p~glAvDw~~~~LY~td~~---------------------------------~~~I~v~~ldG~~~~---~~ 1126 (1332)
+...++++.+.++.|+++... ...|.++++++.... .+
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 122478888888888876422 115667777754321 11
Q ss_pred e------cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe----cCCCceEEEE----ecCCCCcc-----eEEE
Q psy5806 1127 V------NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY----LDGSYRTVLV----EEDLAFPN-----ELAI 1187 (1332)
Q Consensus 1127 ~------~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~----ldG~~~~~l~----~~~l~~p~-----glai 1187 (1332)
. ........++.+|. |.++++.... ......|+..+ +++.....++ ...-.+.. .+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~--~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTD-ERVCLQWLKR--VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF 319 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSS-SEEEEEEEES--STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred cCCccCCCCcceEEEeEEeCC-CeEEEEEecc--ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence 1 11223578899996 6666652221 01235688888 6554433333 11112222 6788
Q ss_pred ecCCCEEEEE-Ec--CCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC------CCEEEEEEecC
Q psy5806 1188 DFKQRRLFWA-DS--TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE------AMSVVIAREKS 1257 (1332)
Q Consensus 1188 D~~~~~LY~~-d~--~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~------~~~V~~~~~~~ 1257 (1332)
.++++.||+. .. +..+|...+++|...+.+.. .....++.. . .+++||++... ...|++++..+
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~-----~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFR-----V-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEE-----E-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEE-----E-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 8888888774 22 24468888988766444433 222234444 1 46677777643 34567776544
Q ss_pred C
Q psy5806 1258 D 1258 (1332)
Q Consensus 1258 g 1258 (1332)
|
T Consensus 394 g 394 (719)
T 1z68_A 394 Y 394 (719)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=3.3 Score=52.37 Aligned_cols=161 Identities=11% Similarity=-0.014 Sum_probs=90.8
Q ss_pred ceEEEEEeCCCcEEEEE--eCCC--CeEEEEE----CCCCCCceeEe---ecCCCCce-----eeEEEecCCeEEEE-cC
Q psy5806 1046 SSIFFDYHYSKNLIYFA--DMRS--GNLRTFD----MSDSTRIKPIP---LMNDTIRD-----NFVIDWVANNIYYI-DS 1108 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~s--d~~~--~~I~~~~----l~~g~~~~~i~---~~~~~~p~-----glAvDw~~~~LY~t-d~ 1108 (1332)
.+..++|.+.+ +++++ +... ..|..++ +.+|....++. ....+... .+++.+.++.||+. ..
T Consensus 254 ~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 35688999985 55554 3222 3588888 66443332221 11112222 67888778888773 22
Q ss_pred --CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecC--CCCCCCCCcEEEEecCCCce-EEEEecCC----
Q psy5806 1109 --QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWG--LYDNSPTTKIEKVYLDGSYR-TVLVEEDL---- 1179 (1332)
Q Consensus 1109 --~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~--~~~~~~~~~I~r~~ldG~~~-~~l~~~~l---- 1179 (1332)
+...|.+.++++...+.+..+.....+++.. ..+.||++... . ......|+++++++... ...+...+
T Consensus 333 ~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 333 KDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEE--YPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp TTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGG--CTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred cCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCC--CCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 2446777888765544454433334566655 67889988754 1 11346799999965431 22222111
Q ss_pred CCcceEEEecCCCEEEEEEcC--CCeEEEEecC
Q psy5806 1180 AFPNELAIDFKQRRLFWADST--NKRIEYCDFF 1210 (1332)
Q Consensus 1180 ~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~d 1210 (1332)
.....+++.++++.|+++-+. ...+...|+.
T Consensus 410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp BCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 122356777778887766433 2456666774
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0052 Score=55.51 Aligned_cols=42 Identities=29% Similarity=0.730 Sum_probs=34.7
Q ss_pred ccccCCCC--cc-eeeeccCCCceEEeCCCCceecCCCCCcCCCc
Q psy5806 392 YQSHCAPK--VC-SHICLPNKHRFTCQCPLGLTLSPDNKSCSESP 433 (1332)
Q Consensus 392 ~~n~C~~g--~C-shlCl~~~~~~~C~C~~G~~L~~d~~tC~~~~ 433 (1332)
+.|+|+.. .| .+.|++.+++|+|.|+.||++.+++++|+...
T Consensus 2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~did 46 (87)
T 1z6c_A 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46 (87)
T ss_dssp CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCC
T ss_pred ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcC
Confidence 35788733 38 56899999999999999999999999997543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.36 E-value=3 Score=46.27 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=100.2
Q ss_pred eEEEEeecceEEEEeCCCCCCC-CcccccC-CccceEEEEEeCC--CcEEEEEeCCCCeEEEEECCCCCCc--------e
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLL-PVTLPFP-EYMSSIFFDYHYS--KNLIYFADMRSGNLRTFDMSDSTRI--------K 1081 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~-~~~~pi~-~~~~~~~id~d~~--~~~lY~sd~~~~~I~~~~l~~g~~~--------~ 1081 (1332)
+|+.+..+..|+..++...... .....+. ....+.+++|.+. ++.|+ +-...+.|+..++..+... .
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA-SASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEE-EEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEE-EEcCCCeEEEEecCCCcccccccCccee
Confidence 4444444332555565533211 1111112 2234679999985 44454 4446788988887754321 1
Q ss_pred eEeecCCCCceeeEEEec--CCeEEEEcCCCceEEEEeeCC-ceEEE------Ee-------cCCCCceEEEEcCC---C
Q psy5806 1082 PIPLMNDTIRDNFVIDWV--ANNIYYIDSQMHTINVARSDG-QHKKI------LV-------NDLMEPLAIAVYPR---R 1142 (1332)
Q Consensus 1082 ~i~~~~~~~p~glAvDw~--~~~LY~td~~~~~I~v~~ldG-~~~~~------~~-------~~~~~P~~iavdp~---~ 1142 (1332)
.........+..|++.+. +..|+.+ ...+.|.++++.. +.... +. ........++.+|. .
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLGLKLACL-GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEE-ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred eeecccCCceeEEEEcCCCCCcEEEEe-cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 122223446788998877 5555544 4567899999863 21110 10 23345678888885 4
Q ss_pred cEEEEEecCCCCCCCCCcEEEEecCCCceEEEE--ecCCCCcceEEEecCCC---EEEEEEcCCCeEEEEecCC
Q psy5806 1143 GLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV--EEDLAFPNELAIDFKQR---RLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1143 g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~--~~~l~~p~glaiD~~~~---~LY~~d~~~~~I~~~d~dG 1211 (1332)
..|..+... ..+............+. ...-.....+++.+++. .++.+-...+.|...|+..
T Consensus 183 ~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 183 EKLAVSALE-------QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEEETT-------EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred cEEEEecCC-------CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 444444332 23333333232222221 11224466788887763 5555556778888888764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.92 Score=50.96 Aligned_cols=193 Identities=13% Similarity=0.001 Sum_probs=116.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc--eeEeecCCCCceeeEEEecCC-eEEEEcCCCceEEEEee-CCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI--KPIPLMNDTIRDNFVIDWVAN-NIYYIDSQMHTINVARS-DGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~--~~i~~~~~~~p~glAvDw~~~-~LY~td~~~~~I~v~~l-dG~ 1121 (1332)
.+.+++|++.++.|+.+. ..+.|+..++..+... ..........+..+++...++ .|+.+. ..+.|.++++ .+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSP 90 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSS
T ss_pred cEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCC
Confidence 467999999888777665 6788888887644411 112223345678899998777 676655 4568999999 766
Q ss_pred eEEEEec--CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC---------CceEEEEecCCCCcceEEEecC
Q psy5806 1122 HKKILVN--DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG---------SYRTVLVEEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1122 ~~~~~~~--~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG---------~~~~~l~~~~l~~p~glaiD~~ 1190 (1332)
....+.. .......|+++| ...|+..... +.|...++.. ......+. .-..+..++++++
T Consensus 91 ~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 91 SFQALTNNEANLGICRICKYG-DDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SEEECBSCCCCSCEEEEEEET-TTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred ceEeccccCCCCceEEEEeCC-CCEEEEEcCC-------CeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 5555544 445678999999 6666655433 4566666643 11111111 1234566777644
Q ss_pred CCEEEEEEcCCCeEEEEecCC-Cc--eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFG-RS--RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG-~~--~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
. |+.+ ...+.|...|+.. .. ...... ...+..|++ .+.++.++++-...+.|...+...
T Consensus 162 ~--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~-----~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 162 R--LIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL-----LPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp E--EEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE-----CSGGGCEEEEEETTSEEEEEECCT
T ss_pred c--EEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEE-----CCCCCCEEEEEecCCcEEEEEEcC
Confidence 3 5555 4667899999876 32 222222 455677788 220344455555677777766543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=2.3 Score=49.74 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=128.0
Q ss_pred ceEEEEeecceEEEEeCCC---CCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECC---CCCCceeEeec
Q psy5806 1013 EFLLYTSRFGVIRRISLDT---ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS---DSTRIKPIPLM 1086 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~---~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~---~g~~~~~i~~~ 1086 (1332)
.+|+....+..|+.-++.. .........+.....+.+++|.+.++.|+.+. ..+.|...+++ .+.........
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~ 155 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-KDGQIIVLKVNHYQQESEVKFLNCE 155 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe-CCCEEEEEEeccccCCceeeccccc
Confidence 4555555544366555543 21111112222234578999998777666554 67888777763 12221111100
Q ss_pred -----------CCCCceeeEEEe-cCCeEEEEcCCCceEEEEeeC-CceEEEEec--CCCCceEEEEcCCCcEEEEEecC
Q psy5806 1087 -----------NDTIRDNFVIDW-VANNIYYIDSQMHTINVARSD-GQHKKILVN--DLMEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1087 -----------~~~~p~glAvDw-~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~--~~~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
....+..++.-+ ..+++.++-...+.|.++++. ++....+.. .......|+++|...+|+.....
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 235 (437)
T 3gre_A 156 CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR 235 (437)
T ss_dssp EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT
T ss_pred eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 111222333211 124455555567799999997 444444543 34678999999965555544432
Q ss_pred CCCCCCCCcEEEEecCCCceEEEEe-cCCCCcceEEEec---CCCEEEEEEcCCCeEEEEecCCC-ceEEEEe-e-----
Q psy5806 1152 LYDNSPTTKIEKVYLDGSYRTVLVE-EDLAFPNELAIDF---KQRRLFWADSTNKRIEYCDFFGR-SRKIVIS-K----- 1220 (1332)
Q Consensus 1152 ~~~~~~~~~I~r~~ldG~~~~~l~~-~~l~~p~glaiD~---~~~~LY~~d~~~~~I~~~d~dG~-~~~~~~~-~----- 1220 (1332)
+.|...++........+. ..-.....|++.+ .++++.++-...+.|...|+... ....+.. .
T Consensus 236 -------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (437)
T 3gre_A 236 -------GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM 308 (437)
T ss_dssp -------SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG
T ss_pred -------CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc
Confidence 457777765433322222 1112234554443 23445555566777888888633 3333331 1
Q ss_pred ---------------------cccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1221 ---------------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1221 ---------------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
....+|++ .++.++++-...+.|...+..++ .....+..
T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~-------~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~ 368 (437)
T 3gre_A 309 EHFLPIEKGLEELNFCGIRSLNALSTISV-------SNDKILLTDEATSSIVMFSLNEL---SSSKAVIS 368 (437)
T ss_dssp GGGSCBCSSGGGCCCCCCCSGGGGCCEEE-------ETTEEEEEEGGGTEEEEEETTCG---GGCEEEEC
T ss_pred ceecccccccccceecccccCCceEEEEE-------CCceEEEecCCCCeEEEEECCCc---ccceEEec
Confidence 11345677 45567777778899999998887 55555543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=6 Score=45.71 Aligned_cols=198 Identities=10% Similarity=0.029 Sum_probs=113.7
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~ 1124 (1332)
.+.+++|.+.++.|+-+. ..+.|+..++.++.....+ .....+..+++.+..+++.++....+.|.++++.. ....
T Consensus 167 ~v~~~~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~ 243 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243 (393)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCCEEEEec-CCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 467899999888776554 7788999998744322222 23345678888875566666666677899999874 3333
Q ss_pred EEe-------cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc------------eEEEEecCCCCcceE
Q psy5806 1125 ILV-------NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY------------RTVLVEEDLAFPNEL 1185 (1332)
Q Consensus 1125 ~~~-------~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~------------~~~l~~~~l~~p~gl 1185 (1332)
.+. .-.....+|+++|...+|+-... . +.|..-++.... ....+...-.....+
T Consensus 244 ~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-d------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 316 (393)
T 1erj_A 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-D------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316 (393)
T ss_dssp EEC------CCCSSCEEEEEECTTSSEEEEEET-T------SEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred eecccccCCCCCCCCEEEEEECCCCCEEEEEeC-C------CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence 331 12245788999996555544432 2 345555553321 111111122345577
Q ss_pred EEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccc--cccEEEEEECCCCEEEEEEec
Q psy5806 1186 AIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKA--FIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1186 aiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~--~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
++.++++.|.- -...+.|...|.........+. .....++++ +++.. .++.++.+-...+.|...+..
T Consensus 317 ~~~~~~~~l~s-gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~--~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 317 ATTQNDEYILS-GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV--ANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EECGGGCEEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--CSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EECCCCCEEEE-EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEe--cCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 88877666654 3566788888876443322222 344556666 11111 134566666667777666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.22 E-value=10 Score=48.29 Aligned_cols=358 Identities=13% Similarity=0.085 Sum_probs=184.6
Q ss_pred cceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEE
Q psy5806 467 KSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTL 546 (1332)
Q Consensus 467 ~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~ 546 (1332)
..+.+++|++....|.... .++.|.-.++........+...-..+.++++.+.++.|.... ..+.|.+-++.......
T Consensus 14 ~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp SCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEEE
T ss_pred CceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEE
Confidence 4567889998766666654 567777777654333333443445677899988777666654 46889999986544333
Q ss_pred EEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCC-ceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEe
Q psy5806 547 LFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGS-HRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625 (1332)
Q Consensus 547 l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~-~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~ 625 (1332)
.+.......+.+++.|...+|+-.... ..|..-+++.. .....+...-.....+++.+.++.++.+-...+.|...+
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 92 DFEAHPDYIRSIAVHPTKPYVLSGSDD--LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETT--SEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred EEecCCCCEEEEEEeCCCCEEEEEcCC--CEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 333455678899999987777755532 34444444443 233333333345567787774444444444445565555
Q ss_pred cCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccC
Q psy5806 626 LDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705 (1332)
Q Consensus 626 ~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~ 705 (1332)
+.+........ . . ..++. ...+-.|. +
T Consensus 170 ~~~~~~~~~~~--------------------~-----~-----~~~~v----------~~~~~~~~-----~-------- 196 (814)
T 3mkq_A 170 LGQSTPNFTLT--------------------T-----G-----QERGV----------NYVDYYPL-----P-------- 196 (814)
T ss_dssp TTCSSCSEEEE--------------------C-----C-----CTTCC----------CEEEECCS-----T--------
T ss_pred CCCCcceeEEe--------------------c-----C-----CCCCE----------EEEEEEEC-----C--------
Confidence 54322111100 0 0 00000 01111110 0
Q ss_pred CccceEee-ccceeEEEecCCCCCcceeeecc-cccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCC
Q psy5806 706 PSKFLLVS-QTDKIRQISLDVEYRYPIVLPLR-QLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNR 783 (1332)
Q Consensus 706 ~~~~ll~s-~~~~i~~i~l~~~~~~~~~~~~~-~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~ 783 (1332)
...+|+.+ ....|+..++.... ....+. ....+.++.+.+....++ +-...+.|...++........+......
T Consensus 197 ~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 272 (814)
T 3mkq_A 197 DKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVGLER 272 (814)
T ss_dssp TCCEEEEECTTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEE-EEETTSCEEEEETTTCSEEEEECCSSSS
T ss_pred CCCEEEEEeCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcEEEEeecCCCc
Confidence 11222222 23345555544321 111111 234567888888755444 4445677877777654444444444556
Q ss_pred ccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC---
Q psy5806 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD--- 860 (1332)
Q Consensus 784 p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d--- 860 (1332)
+..+++.+.++++|.+-...+.+.+.++... ...++++|. |.++++..... ....+......
T Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-g~~~~~~~~~~--~~~~~~~~~~~~~~ 337 (814)
T 3mkq_A 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGND------------EPTLSLDPV-GKLVWSGGKNA--AASDIFTAVIRGNE 337 (814)
T ss_dssp EEEEEECTTCGGGEEEEEETTEEEEEECSCC------------SCCEEECSS-SEEEEECCTTS--CTTCEEEEECCSCC
T ss_pred EEEEEEccCCCceEEEEEeCCCEEEEEcCCC------------CceeEECCC-CCEEEECcccc--cceeeeeeeccccc
Confidence 7778888777776655554555555554321 234566665 56655432111 01223333222
Q ss_pred ----CCC----cEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC
Q psy5806 861 ----GTN----RAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903 (1332)
Q Consensus 861 ----G~~----~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d 903 (1332)
|.. ...+...-..|..+++.+.+ +.|..+. .+.+...++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~--~~~~~i~~~~ 385 (814)
T 3mkq_A 338 EVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG--DGEYVIYTAL 385 (814)
T ss_dssp CCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE--TTEEEEEETT
T ss_pred ccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec--CCEEEEEECc
Confidence 111 11111113356788888877 6665554 4566555544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.20 E-value=2.2 Score=53.84 Aligned_cols=198 Identities=8% Similarity=-0.016 Sum_probs=122.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc----eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-c
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI----KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-Q 1121 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~----~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~ 1121 (1332)
+.+|++.+.+..++.+-...++|+..++..+... .............+++.+.++.|. +-...+.|.++++.. .
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-sgs~Dg~v~vwd~~~~~ 463 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAGV 463 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE
T ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEE-EEeCCCcEEEEECCCCc
Confidence 5678888776667777768888988887643221 112222334577899987666664 545567999999974 4
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC---CCCcceEEEecCC-CEEEEE
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED---LAFPNELAIDFKQ-RRLFWA 1197 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~---l~~p~glaiD~~~-~~LY~~ 1197 (1332)
....+..-......|+++|...+|.-.. .. ..|..-++.+.....+.... ......+++.++. +.+.++
T Consensus 464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~D------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 464 STRRFVGHTKDVLSVAFSLDNRQIVSAS-RD------RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEE-TT------SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred ceeEEeCCCCCEEEEEEeCCCCEEEEEe-CC------CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 4444544445678999999655554443 22 45666666665444443221 1235567777654 345555
Q ss_pred EcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
-...+.|...|+........+. .....+|++ . .++.+..+-...+.|...+..++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~-----s-pdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV-----S-PDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-----C-TTSSEEEEEETTSBCEEEETTTT
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-----e-CCCCEEEEEeCCCeEEEEECCCC
Confidence 5677889988887554333332 445667787 2 23445555556788888887766
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0057 Score=63.98 Aligned_cols=39 Identities=26% Similarity=0.727 Sum_probs=35.4
Q ss_pred ccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 394 SHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 394 n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
++|. ++.|.|.|++..++|+|.|+.||.|..||++|...
T Consensus 82 deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~ 122 (195)
T 1nfu_B 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 122 (195)
T ss_dssp CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred ccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccC
Confidence 7888 57899999999999999999999999999999754
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0081 Score=61.29 Aligned_cols=41 Identities=29% Similarity=0.792 Sum_probs=35.6
Q ss_pred ccccccCC--CCccee-eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 390 PNYQSHCA--PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 390 p~~~n~C~--~g~Csh-lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
..++++|. ++.|.| .|++.+++|+|.|+.||++..|+++|+
T Consensus 119 c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~ 162 (162)
T 1uzk_A 119 LEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162 (162)
T ss_dssp EEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred cCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence 35678887 467875 999999999999999999999999994
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0054 Score=61.54 Aligned_cols=41 Identities=34% Similarity=0.899 Sum_probs=35.4
Q ss_pred ccccccCC--CCccee-eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 390 PNYQSHCA--PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 390 p~~~n~C~--~g~Csh-lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+.++++|. ++.|.| .|++.+++|+|.|+.||++..|+++|.
T Consensus 104 C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 104 CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp EEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred cCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 44578887 566876 899999999999999999999999984
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.12 E-value=7 Score=45.84 Aligned_cols=224 Identities=10% Similarity=0.013 Sum_probs=123.0
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
..+|+....+..|+..++.... ....+.+ ...+..++++ ++.| ++-...+.|+..++.++.....+. .....
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~ 201 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNII-ISGSTDRTLKVWNAETGECIHTLY-GHTST 201 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEE-EEEETTSCEEEEETTTTEEEEEEC-CCSSC
T ss_pred CCEEEEEECCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEE-EEEeCCCeEEEEECCcCcEEEEEC-CCCCc
Confidence 3455544444336666665332 1222222 2345678887 3444 444478899999987543332222 22334
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
...++++ ++.|+. -...+.|.++++. ++....+.........++.++ ..|+.... . +.|...++...
T Consensus 202 v~~~~~~--~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-d------g~i~iwd~~~~ 269 (445)
T 2ovr_B 202 VRCMHLH--EKRVVS-GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAY-D------FMVKVWDPETE 269 (445)
T ss_dssp EEEEEEE--TTEEEE-EETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS--SCEEEEET-T------SCEEEEEGGGT
T ss_pred EEEEEec--CCEEEE-EeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECC--CEEEEEcC-C------CEEEEEECCCC
Confidence 5666665 666654 4456789999987 444444544445667777743 34444432 2 45777777554
Q ss_pred ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1170 YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1170 ~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
.....+...-.....+++ +++.|+.+ ...+.|...|+.......... .....+++. .++.|+ +-...
T Consensus 270 ~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~-~~~~d 338 (445)
T 2ovr_B 270 TCLHTLQGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-------KDNILV-SGNAD 338 (445)
T ss_dssp EEEEEECCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTCCEEEEECCCCSCEEEEEE-------ETTEEE-EEETT
T ss_pred cEeEEecCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCCCEEEEEcCCcccEEEEEE-------eCCEEE-EEeCC
Confidence 433333322233444454 56666655 457789998986443322222 344456666 555544 44466
Q ss_pred CEEEEEEecCCCCcceEEEEe
Q psy5806 1248 MSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1248 ~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+.|...+..++ .....+.
T Consensus 339 g~i~vwd~~~~---~~~~~~~ 356 (445)
T 2ovr_B 339 STVKIWDIKTG---QCLQTLQ 356 (445)
T ss_dssp SCEEEEETTTC---CEEEEEC
T ss_pred CeEEEEECCCC---cEEEEEc
Confidence 78888887766 4444443
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0062 Score=59.98 Aligned_cols=39 Identities=26% Similarity=0.727 Sum_probs=34.9
Q ss_pred ccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 394 SHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 394 n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
++|. +++|.|.|++.+++|+|.|+.||+|..||++|...
T Consensus 82 d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~ 122 (134)
T 2vh0_B 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 122 (134)
T ss_dssp CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred CccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcC
Confidence 7787 47899999999999999999999999999999643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.11 E-value=2.9 Score=48.07 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=118.9
Q ss_pred eEEEEEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee-CCceEE
Q psy5806 1047 SIFFDYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS-DGQHKK 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG~~~~ 1124 (1332)
+..++|+|+++.|..+.. ..+.|+..++.++.....+ ...+.+.+|++.+.++.|..+. . +.+.+++. +|....
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s-~-~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTDGKVVAYIT-G-SSLEVISTVTGSCIA 211 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSSEEEEEC-S-SCEEEEETTTCCEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccCCceEEecc-c-eeEEEEEeccCccee
Confidence 467889999888877654 4578888887754433332 2345688999998777776554 2 34545544 465443
Q ss_pred EE--ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE----EecCCCCcceEEEecCCCEEEEEE
Q psy5806 1125 IL--VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL----VEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1125 ~~--~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l----~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
.. .......+++++.|....|..+.... .....|...++.......+ +.......+.|++.++++.|..+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg- 287 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKK---GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA- 287 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESS---SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE-
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCC---cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE-
Confidence 32 11223468899999655555443322 1122455555544333222 22223446778999888777665
Q ss_pred cCCCeEEEEecCCCc-eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1199 STNKRIEYCDFFGRS-RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~-~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
...+.|...|+.... ...+.. .....+|++ . .++.+..+-...++|...+...
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f-----S-pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI-----S-PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE-----C-TTSCEEEEEETTSEEEEEECCT
T ss_pred cCCCEEEEEECCCCcEEEEecCcccCCEEEEEE-----C-CCCCEEEEEeCCCeEEEEEcCC
Confidence 456789888886433 222322 455678888 2 2455566777889998888743
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0088 Score=59.53 Aligned_cols=39 Identities=36% Similarity=0.778 Sum_probs=34.9
Q ss_pred ccCCCCCCccccccCCC-CccccCCCCeeEccCCcccccc
Q psy5806 972 CGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~-~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
|...||+|+|.|..+++ +|+|.|+.||.|..|+++|...
T Consensus 91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~ 130 (142)
T 2c4f_L 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 130 (142)
T ss_dssp TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEES
T ss_pred ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCC
Confidence 55568999999999999 9999999999999999999743
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.14 Score=61.86 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCCccEEEeccCCeEEEEeCC---------------------CCeEEEEeCCCCC------c-EE-EEe--------
Q psy5806 507 HNTKKPAGVAIDWRTNKLYWTESE---------------------YNWIEVSNLDGTY------P-TL-LFW-------- 549 (1332)
Q Consensus 507 ~~~~~p~glAvDw~~~~lYw~d~~---------------------~~~I~v~~l~g~~------~-~~-l~~-------- 549 (1332)
+.+.+|+++++++.++.||++-+. .++|.....++.. . .+ |+.
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 345689999999999999998432 2678887765421 1 22 221
Q ss_pred ------------CCCCCceEEEEecCCCeEEE-EecCC----------CCceEEEcCCCCceEEEEe-CCCCCceeeEEe
Q psy5806 550 ------------QNLSEPRDIAVNPIGGIMYW-CSWGD----------LHKIEMAGMDGSHRHILAS-DSLKNPTGLAID 605 (1332)
Q Consensus 550 ------------~~~~~P~~iavdp~~G~lyw-td~g~----------~~~I~r~~~dG~~~~~l~~-~~l~~p~glaiD 605 (1332)
..+..|..|++|+. |.||+ ||.+. +..+.+...+....+.++. .....|+||++.
T Consensus 461 ~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS 539 (592)
T 4a9v_A 461 TPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred ccccCccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence 12688999999996 99999 88531 2368888775333334443 345689999999
Q ss_pred ccCCeEEEEeCCCC
Q psy5806 606 LENSRLYWANVGLK 619 (1332)
Q Consensus 606 ~~~~rLYw~d~~~~ 619 (1332)
+..++||++-...+
T Consensus 540 PD~ktLfV~vQHPG 553 (592)
T 4a9v_A 540 PDQKTLFVGIQHPG 553 (592)
T ss_dssp TTSSEEEEEEESTT
T ss_pred CCCCEEEEEEeCCC
Confidence 99999999865443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.98 E-value=7.8 Score=45.59 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=129.9
Q ss_pred cccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe
Q psy5806 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP 1084 (1332)
Q Consensus 1006 tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~ 1084 (1332)
+|......+|+....+..|+..++.... .+..+.+ ...+.+++|.+.+ ++++-...+.|...++.++..... +
T Consensus 126 ~~~~~~~~~l~sgs~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~-~ 199 (464)
T 3v7d_B 126 TCLQFEDNYVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHV-F 199 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEE-E
T ss_pred EEEEECCCEEEEEcCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEE-E
Confidence 3443333455555444337766665332 2222222 2346788897765 444545788999999875433322 2
Q ss_pred ecCCCCceeeEEEec-CCeEEEEcCCCceEEEEeeCCceEE------------------------EEecCCCCceEEEEc
Q psy5806 1085 LMNDTIRDNFVIDWV-ANNIYYIDSQMHTINVARSDGQHKK------------------------ILVNDLMEPLAIAVY 1139 (1332)
Q Consensus 1085 ~~~~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ldG~~~~------------------------~~~~~~~~P~~iavd 1139 (1332)
.........+++.+. .+++.++-...+.|.++++...... .+........ ++.
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~ 277 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVS 277 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEc
Confidence 223446677888753 4455566666778999998743211 1111112223 344
Q ss_pred CCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCce-EEEE
Q psy5806 1140 PRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-KIVI 1218 (1332)
Q Consensus 1140 p~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~-~~~~ 1218 (1332)
+...+|+..... +.|...++........+...-.....++++++++.|+.+ ...+.|...|+..... ..+.
T Consensus 278 ~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 278 GHGNIVVSGSYD-------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EETTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEeCC-------CeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEe
Confidence 544455555432 467777776544444443334556788999888877765 4667899999864332 2222
Q ss_pred e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1219 S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1219 ~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
. ......+++ .+.+|+ +-...+.|...+..++
T Consensus 350 ~h~~~v~~~~~-------~~~~l~-s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 350 GHTALVGLLRL-------SDKFLV-SAAADGSIRGWDANDY 382 (464)
T ss_dssp CCSSCEEEEEE-------CSSEEE-EEETTSEEEEEETTTC
T ss_pred CCCCcEEEEEE-------cCCEEE-EEeCCCcEEEEECCCC
Confidence 2 444566777 455544 4446788888887765
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.023 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.670 Sum_probs=19.4
Q ss_pred ccccCC--CCcce--eeeccCCCceEEe
Q psy5806 392 YQSHCA--PKVCS--HICLPNKHRFTCQ 415 (1332)
Q Consensus 392 ~~n~C~--~g~Cs--hlCl~~~~~~~C~ 415 (1332)
++|+|. ...|. +.|+|.+++|+|.
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~ 29 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCL 29 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEE
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEec
Confidence 468887 35684 6899999999999
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.95 E-value=2.9 Score=48.14 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=119.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee----cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-C-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL----MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-G- 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~----~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G- 1120 (1332)
+..+.|.+.++..+++-...+.|...++..+.....+.. ........+++....++++++-...+.|.++++. +
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 445666766555455556778888888775443332211 1122455677766677888887778899999986 2
Q ss_pred ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-------CCCcceEEEecCCCE
Q psy5806 1121 QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-------LAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1121 ~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-------l~~p~glaiD~~~~~ 1193 (1332)
.....+..-......|+++|. |.++.+-... +.|..-++........+... ......+++.++++.
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPD-GQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTT-SSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE
T ss_pred cceEEECCcCCCeEEEEEecC-CCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE
Confidence 333444433456789999994 5555554433 56777777654443333211 123567899987776
Q ss_pred EEEEEcCCCeEEEEecCCCceE-EEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1194 LFWADSTNKRIEYCDFFGRSRK-IVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~~~-~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|+-. ...+.|...|....... .+.. ......|++ .+ ++.+..+-...+.|...+..+.
T Consensus 313 l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~-----s~-dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 313 LFAG-YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL-----SS-DGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEE-CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE-----CS-SSSEEEEECTTSCEEEEECCSS
T ss_pred EEEE-ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE-----CC-CCCEEEEeeCCCCEEEEecCCC
Confidence 6654 56788999888544332 2211 334567787 22 3444556566778877776543
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0071 Score=59.54 Aligned_cols=41 Identities=24% Similarity=0.819 Sum_probs=37.5
Q ss_pred CcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 970 n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
++|..++++|.+.|..++++|+|.|+.||.|..|+++|...
T Consensus 82 d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~ 122 (134)
T 2vh0_B 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 122 (134)
T ss_dssp CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred CccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcC
Confidence 78988889999999999999999999999999999999743
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.7 Score=50.90 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=116.9
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC----------ceeEeecCC------------CCceeeEEEec
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR----------IKPIPLMND------------TIRDNFVIDWV 1099 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~----------~~~i~~~~~------------~~p~glAvDw~ 1099 (1332)
+....+..++|++.++.|.... ..+.|...++..+.. ....+.... ..+..|++.+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGD-KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEE-TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEc-CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3445678999999888776665 678888888774431 111111121 44677888866
Q ss_pred CC-eEEEEcCCCceEEEEeeCCceEE----------------------------------------EE-ecCCCCceEEE
Q psy5806 1100 AN-NIYYIDSQMHTINVARSDGQHKK----------------------------------------IL-VNDLMEPLAIA 1137 (1332)
Q Consensus 1100 ~~-~LY~td~~~~~I~v~~ldG~~~~----------------------------------------~~-~~~~~~P~~ia 1137 (1332)
++ .++++-...+.|.++++...... .+ ..-......|+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 52 34455556778888888642211 11 12234578899
Q ss_pred EcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEE-------ecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec
Q psy5806 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLV-------EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209 (1332)
Q Consensus 1138 vdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~-------~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~ 1209 (1332)
++|. |.++.+- .. +.|..-++. +.....++ ...-.....+++++++..++.+-...+.|...|+
T Consensus 185 ~~~~-~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 185 INSD-YETYLSA-DD------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp ECTT-SSEEEEE-CS------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred EcCC-CCEEEEe-CC------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9995 4444554 23 567777776 32222222 1112346788999887344444456788999998
Q ss_pred CCCce-----EEEEe-ec------------ccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1210 FGRSR-----KIVIS-KV------------APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1210 dG~~~-----~~~~~-~~------------~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
..... ..+.. .. ...+|++ .+.+.+|.... . +.|...+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~~~-~-~~v~iwd~~~ 315 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF-----SHSGRYMMTRD-Y-LSVKVWDLNM 315 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEE-----CTTSSEEEEEE-S-SEEEEEETTC
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEE-----CCCCCEEEEee-C-CeEEEEeCCC
Confidence 65432 33322 21 5677888 33445555544 4 8898888765
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.0069 Score=63.35 Aligned_cols=41 Identities=24% Similarity=0.819 Sum_probs=37.9
Q ss_pred CcccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 970 n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
++|..++++|.|.|..++++|+|.|+.||.|..|+++|...
T Consensus 82 deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~ 122 (195)
T 1nfu_B 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 122 (195)
T ss_dssp CGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred ccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccC
Confidence 78998889999999999999999999999999999999854
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.16 Score=58.47 Aligned_cols=196 Identities=10% Similarity=-0.019 Sum_probs=108.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC-CceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce---
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDST-RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH--- 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~-~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~--- 1122 (1332)
+..++|++.++.|.... ..+.|+..++.++. .....+.........|++.+.++.|+.+. ..+.|.++++....
T Consensus 14 v~~~~~s~~g~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTT-ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp CSCCEECSSSSEEECCC-SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC------CCC
T ss_pred EEEEEECCCCCEEEEec-CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCcee
Confidence 45678888777665443 56777777765331 11112222334678899987766665544 45689999987543
Q ss_pred -EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---EEEEec-CCCCcceEEEecCCCEEEEE
Q psy5806 1123 -KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---TVLVEE-DLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1123 -~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---~~l~~~-~l~~p~glaiD~~~~~LY~~ 1197 (1332)
...+.........++++|...+|+..... +.|...+++.... ...+.. .-.....|++.++++.|..+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGA-------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESS-------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecC-------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 22233344567899999965556555432 4566666665541 222322 23557788999877777665
Q ss_pred EcCCCeEEEEecCCCc----------------eEEEE--e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFFGRS----------------RKIVI--S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~----------------~~~~~--~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
. ..+.|...|+.... .+.+. . .....++++ .+.+.+|+.. ...+.|...+..++
T Consensus 165 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~l~~~-~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 165 C-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF-----SPSGNALAYA-GHDSSVTIAYPSAP 237 (377)
T ss_dssp E-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEE-----CTTSSCEEEE-ETTTEEC-CEECST
T ss_pred e-CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEE-----CCCCCEEEEE-eCCCcEEEEECCCC
Confidence 4 55778888874111 11221 1 334567777 2334444444 46788888888777
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=94.86 E-value=6.6 Score=44.25 Aligned_cols=195 Identities=9% Similarity=0.011 Sum_probs=119.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce---
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH--- 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~--- 1122 (1332)
.+.+++|++.++.|+-+ ...+.|+..++.++.....+. ........+++.+.++.|... ...+.|.++++....
T Consensus 57 ~v~~~~~s~d~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSA-SQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CEEEEEECTTSSEEEEE-ETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTCSBSC
T ss_pred ceEEEEECCCCCEEEEE-eCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEE-eCCCeEEEEECccCCCcc
Confidence 46789999887766554 477889999877544333332 334456788898777666544 446788899986421
Q ss_pred --EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1123 --KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1123 --~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...+..-......+++.+ .+.|+-+.. . ..|..-++........+...-.....+++.++++.| .+-..
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~-d------~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~sg~~ 204 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLD-DNQIVTSSG-D------TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGAC 204 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEE-TTEEEEEET-T------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEET
T ss_pred eeEEEecCCCccEEEEEECC-CCcEEEEEC-C------CcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE-EEEeC
Confidence 122333334566777776 455544432 2 457666775544444443333456788888766544 45556
Q ss_pred CCeEEEEecCCCce-EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1201 NKRIEYCDFFGRSR-KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~-~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|...|+..... ..+.. .....+|++ .+ ++.++.+-...+.|...+..++
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~-----~p-~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICF-----FP-NGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEE-----CT-TSSEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEE-----cC-CCCEEEEEcCCCcEEEEECCCC
Confidence 78899888864433 33322 455677888 22 3444555567788888887766
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=94.84 E-value=2.6 Score=48.55 Aligned_cols=160 Identities=9% Similarity=0.000 Sum_probs=100.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHK 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~ 1123 (1332)
..+..+++.+.++.++.+-...+.|+..++.........+....+.+..+++.+.++.| ++-...+.|.++++.. ...
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE-EEECSSSCEEEEETTTTEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE-EEEcCCCeEEEEECCCCcEE
Confidence 34678888886666777777889999999863322222232334467889998765555 5666778999999974 433
Q ss_pred EEEecC-------CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE----ecCCCCcceEEEecCCC
Q psy5806 1124 KILVND-------LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV----EEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1124 ~~~~~~-------~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~----~~~l~~p~glaiD~~~~ 1192 (1332)
.++... ......++++|...+| ++-... +.|..-++........+ ...-.....|++.++++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLL-FAGYSN------GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEE-EEECTT------SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred EEecccccccccccCceEEEEECCCCCEE-EEEECC------CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 333221 1235789999955555 443332 46777776544433222 11223467899998877
Q ss_pred EEEEEEcCCCeEEEEecCCCc
Q psy5806 1193 RLFWADSTNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d~dG~~ 1213 (1332)
.|. +-+..+.|..-++.|..
T Consensus 358 ~l~-sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 358 ALC-TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEE-EECTTSCEEEEECCSSS
T ss_pred EEE-EeeCCCCEEEEecCCCc
Confidence 665 44567788888887653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.76 E-value=3.5 Score=48.22 Aligned_cols=208 Identities=10% Similarity=-0.038 Sum_probs=118.2
Q ss_pred ceEEEEEeC-CCcEEEEEeCCCCeEEEEECCC---CCCce-eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee--
Q psy5806 1046 SSIFFDYHY-SKNLIYFADMRSGNLRTFDMSD---STRIK-PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS-- 1118 (1332)
Q Consensus 1046 ~~~~id~d~-~~~~lY~sd~~~~~I~~~~l~~---g~~~~-~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-- 1118 (1332)
.+.+++|++ .++ ++++-...+.|+..++.. +.... .........+..|++.+.++.|+ +-...+.|.++++
T Consensus 65 ~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 65 SITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA-VSSKDGQIIVLKVNH 142 (437)
T ss_dssp CEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEEEEE
T ss_pred ceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEEecc
Confidence 467899999 555 445545788898888763 22111 22212345678899987555565 4445678999988
Q ss_pred --CCceEEEEec------------CCCCceEEE--EcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec--CCC
Q psy5806 1119 --DGQHKKILVN------------DLMEPLAIA--VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE--DLA 1180 (1332)
Q Consensus 1119 --dG~~~~~~~~------------~~~~P~~ia--vdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~--~l~ 1180 (1332)
.|+....... .......++ ..| .+.++++-... +.|...++........+.. .-.
T Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGC
T ss_pred ccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCC
Confidence 3443332110 112233333 334 34444443332 5688888865554444443 235
Q ss_pred CcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE--e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1181 FPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI--S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~--~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
....|+++++++.|+.+ ...+.|...|+......... . .....+|++ ++.-..++.+.++-...+.|...+..+
T Consensus 216 ~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 216 AVSSICIDEECCVLILG-TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV--CQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp CEEEEEECTTSCEEEEE-ETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE--CTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred ceEEEEECCCCCEEEEE-cCCCeEEEEEcCCccEEEEEecCCCCceEEEEe--ccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 67889999887777665 45678999888643322222 1 223345544 111112355666666778888888877
Q ss_pred CCCcceEEEEe
Q psy5806 1258 DTGQWDVHLIR 1268 (1332)
Q Consensus 1258 g~~~~~~~~~~ 1268 (1332)
+ .....+.
T Consensus 293 ~---~~~~~~~ 300 (437)
T 3gre_A 293 G---HCQYAFI 300 (437)
T ss_dssp T---EEEEEEE
T ss_pred C---cEEEEEE
Confidence 7 5444444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.71 E-value=3.3 Score=47.01 Aligned_cols=194 Identities=11% Similarity=-0.005 Sum_probs=113.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-Ee-ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-IP-LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~-~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
+..++|++.++.|.-.. ..+.|+..++..+..... .. .........|++.+.++.|..+ ...+.|.+.+++....
T Consensus 19 v~~l~~sp~g~~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA-SFDATTCIWKKNQDDFE 96 (345)
T ss_dssp EEEEEECTTSSCEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECCC-EE
T ss_pred EEEEEECCCCCEEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE-ECCCcEEEEEccCCCeE
Confidence 57899999887665554 677888777663322211 12 1223457889998877766544 4456788898875432
Q ss_pred --EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE---EEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1124 --KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV---LVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1124 --~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~---l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
..+..-......|+++|...+| .+-... ..|..-+++...... .+.........+++.++++.|.-+
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~~~~l-~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~- 168 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPSGNLL-ATCSRD------KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA- 168 (345)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEE-EEEETT------SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE-
T ss_pred EEEEccCCCCCceEEEEeCCCCEE-EEEECC------CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE-
Confidence 2243334567899999955444 443332 346666665433221 222223446678888877766655
Q ss_pred cCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
...+.|...+........+.. .....+|++ ++.+.+ ..+-...+.|...+..
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~-----sp~g~~-l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF-----DPSGQR-LASCSDDRTVRIWRQY 224 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-----CTTSSE-EEEEETTSCEEEEEEE
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE-----CCCCCE-EEEEeCCCeEEEeccc
Confidence 456778887776543322222 445677888 223444 4454566777777653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.62 Score=53.48 Aligned_cols=173 Identities=10% Similarity=-0.032 Sum_probs=97.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC-C-ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST-R-IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH- 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~-~-~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~- 1122 (1332)
.+..++|++.++.|+... ..+.|+..++..+. . ...........+..+++.+.++.|+.+. ..+.|.+++++...
T Consensus 57 ~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQEND 134 (377)
T ss_dssp CEEEEEECTTTCCEEEEE-TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----
T ss_pred eEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCccc
Confidence 467999999887666655 67788888877443 1 1112222344677888887677776554 45688888887543
Q ss_pred ---EEEEec-CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc---------------eEEEEe--cCCCC
Q psy5806 1123 ---KKILVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY---------------RTVLVE--EDLAF 1181 (1332)
Q Consensus 1123 ---~~~~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~---------------~~~l~~--~~l~~ 1181 (1332)
...+.. -......|+++|...+|+..... +.|...++.... ...++. ..-..
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSS
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------CEEEEEEEEecccCCCccccccccccchhhhhhcccCCce
Confidence 333443 34568899999965555544332 345555553111 011111 12234
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEEEecCCCce-----EEEEe-ecccceEEE
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-----KIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~-----~~~~~-~~~P~glav 1228 (1332)
...++++++++.|+.+. ..+.|...|+..... ..+.. .....+|++
T Consensus 208 v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 259 (377)
T 3dwl_C 208 VHAVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW 259 (377)
T ss_dssp EEEEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE
Confidence 67889998888777664 567888888875433 11211 344567777
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=3.2 Score=52.31 Aligned_cols=77 Identities=5% Similarity=-0.050 Sum_probs=47.1
Q ss_pred ceEEEecCCCEEEEEEcC------------------------------------------CCeEEEEecCCCceEEEEe-
Q psy5806 1183 NELAIDFKQRRLFWADST------------------------------------------NKRIEYCDFFGRSRKIVIS- 1219 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d~~------------------------------------------~~~I~~~d~dG~~~~~~~~- 1219 (1332)
.++++|+++++||+.... .+.|..+|+......--+.
T Consensus 396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 475 (677)
T 1kb0_A 396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH 475 (677)
T ss_dssp SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC
Confidence 368999999999986431 1668888885332211122
Q ss_pred ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1220 KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1220 ~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
...+.+.++ ...++.+|+. ...+.|+.+|..+| +.+..+.
T Consensus 476 ~~~~~~g~~-----~~~g~~v~~g-~~dg~l~a~D~~tG---~~lw~~~ 515 (677)
T 1kb0_A 476 VSPWNGGTL-----TTAGNVVFQG-TADGRLVAYHAATG---EKLWEAP 515 (677)
T ss_dssp SSSCCCCEE-----EETTTEEEEE-CTTSEEEEEETTTC---CEEEEEE
T ss_pred CCCCcCcce-----EeCCCEEEEE-CCCCcEEEEECCCC---ceeeeee
Confidence 222233222 1267788887 46788888888888 5554443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=94.63 E-value=6.1 Score=44.57 Aligned_cols=196 Identities=10% Similarity=0.015 Sum_probs=111.0
Q ss_pred eEEEEE-----eCCCcEEEEEeCCCCeEEEEECCCCCC-----c-eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEE
Q psy5806 1047 SIFFDY-----HYSKNLIYFADMRSGNLRTFDMSDSTR-----I-KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINV 1115 (1332)
Q Consensus 1047 ~~~id~-----d~~~~~lY~sd~~~~~I~~~~l~~g~~-----~-~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v 1115 (1332)
+..++| .+.++.+.++-...+.|+..++..+.. . ...+.........+++.+.+..| ++-...+.|.+
T Consensus 24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~l 102 (343)
T 2xzm_R 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA-ISSSWDKTLRL 102 (343)
T ss_dssp EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE-EEEETTSEEEE
T ss_pred hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE-EEEcCCCcEEE
Confidence 456777 443455556666778888877653221 1 11121223356788998766555 45556779999
Q ss_pred EeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe--cCCCCcceEEEecCCC
Q psy5806 1116 ARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE--EDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1116 ~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~--~~l~~p~glaiD~~~~ 1192 (1332)
+++. |+....+..-......|+++|...+|+-+.. . ..|..-++.+.....+.. ........+++.+...
T Consensus 103 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-d------~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-E------REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp EETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-T------SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred EECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-C------CEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 9987 5544445444456889999996666654432 2 456666766543322211 1112344566655431
Q ss_pred ---------EEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1193 ---------RLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1193 ---------~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
.++.+-...+.|...|..+.....+.. .....+|++ .+ ++.+..+-...+.|...+..
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-----s~-~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI-----SP-NGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEE-----CT-TSSEEEEEETTCEEEEEESS
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEE-----CC-CCCEEEEEcCCCeEEEEECC
Confidence 344455567788887755433333332 445567777 22 33344455567788877763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.59 E-value=2.1 Score=54.04 Aligned_cols=194 Identities=12% Similarity=0.030 Sum_probs=115.8
Q ss_pred eEEEEEeCCCcEEEEEeCCC----CeEEEEECCCCCCc-eeEeecCCCCceeeEEEecCCeEEEEcCC------------
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS----GNLRTFDMSDSTRI-KPIPLMNDTIRDNFVIDWVANNIYYIDSQ------------ 1109 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~----~~I~~~~l~~g~~~-~~i~~~~~~~p~glAvDw~~~~LY~td~~------------ 1109 (1332)
..++++++.+++|.|+.... ..|+.+++.+|... ...+ ... ...+++..+.++.||++...
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~ 200 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPG 200 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Ccc-cccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence 56888999998887765433 46999998855432 1111 111 12577887788889887653
Q ss_pred CceEEEEeeCCce--EEEEecCC---CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcce
Q psy5806 1110 MHTINVARSDGQH--KKILVNDL---MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNE 1184 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~--~~~~~~~~---~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~g 1184 (1332)
...|.+.++.+.. .+.+.... ..-.+++++|...+|+++.... .....|+..+..+...+.|.... .....
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~---~~~~~l~~~~~~~~~~~~l~~~~-~~~~~ 276 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG---WSENDVYWKRPGEKDFRLLVKGV-GAKYE 276 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET---TTEEEEEEECTTCSSCEEEEECS-SCCEE
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC---CCceEEEEEcCCCCceEEeecCC-CceEE
Confidence 2348888887443 22333322 2346899999887888775432 02357888877555555554422 22222
Q ss_pred EEEecCCCEEEEEEc---CCCeEEEEecCCCce---EEEEe---ecccceEEEecCCccccccEEEEEECCCC--EEEEE
Q psy5806 1185 LAIDFKQRRLFWADS---TNKRIEYCDFFGRSR---KIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIA 1253 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~---~~~~I~~~d~dG~~~---~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~ 1253 (1332)
. +.++++ ||+... ...+|..+++++... +.++. .....++++ .+++|+++-...+ +|..+
T Consensus 277 ~-~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-------~~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 277 V-HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-------VGGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp E-EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE-------ETTEEEEEEEETTEEEEEEE
T ss_pred E-EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE-------ECCEEEEEEEECCEEEEEEE
Confidence 2 235666 777644 368899999976542 44543 223456777 6777777765433 44455
Q ss_pred Ee
Q psy5806 1254 RE 1255 (1332)
Q Consensus 1254 ~~ 1255 (1332)
+.
T Consensus 348 ~~ 349 (695)
T 2bkl_A 348 TL 349 (695)
T ss_dssp ET
T ss_pred eC
Confidence 53
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.57 E-value=7.2 Score=49.03 Aligned_cols=196 Identities=9% Similarity=-0.031 Sum_probs=120.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|++.++.|.-.. ..+.|+..++..+.....+. ........+++.+.++.|. +-...+.|.++++.+.....
T Consensus 432 ~v~~v~~s~~g~~l~sgs-~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGS-WDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCEEEEEe-CCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCccee
Confidence 467899999887766554 77899999987544333332 3344678899988777775 44456789999988765554
Q ss_pred EecC----CCCceEEEEcCCCc-EEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1126 LVND----LMEPLAIAVYPRRG-LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1126 ~~~~----~~~P~~iavdp~~g-~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+... ......++++|... .++.+-... +.|..-++........+...-.....++++++++.|.-+ ..
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg-~~ 581 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG-GK 581 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE-eC
Confidence 4221 23467899998542 344443332 457777776655444444334556788999876655544 56
Q ss_pred CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1201 NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|...|+.......... .....++++ .+ ++.+..+ ...+.|...+..++
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----sp-~~~~l~~-~~~~~i~iwd~~~~ 633 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEANSVIHALCF-----SP-NRYWLCA-ATEHGIKIWDLESK 633 (694)
T ss_dssp TSBCEEEETTTTEEEECCBCSSCEEEEEE-----CS-SSSEEEE-EETTEEEEEETTTT
T ss_pred CCeEEEEECCCCceEEEecCCCcEEEEEE-----cC-CCcEEEE-EcCCCEEEEECCCC
Confidence 7788888885433221122 344556777 11 2222222 23456888887766
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0082 Score=57.67 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=35.7
Q ss_pred CCccccccCCC-CcceeeeccCCCceEEeCCCCceecCC-CCCc
Q psy5806 388 RQPNYQSHCAP-KVCSHICLPNKHRFTCQCPLGLTLSPD-NKSC 429 (1332)
Q Consensus 388 ~qp~~~n~C~~-g~CshlCl~~~~~~~C~C~~G~~L~~d-~~tC 429 (1332)
+.+..+++|.. +.|.+.|++.+++|+|.|+.||++..+ +++|
T Consensus 75 ~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~g~~~~g~~C 118 (118)
T 1dx5_I 75 FICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118 (118)
T ss_dssp TEEEECCHHHHCSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred CccccccccCCCCCCcCeEEeCCCCEEEECCCCCccCCCCCCCC
Confidence 33456788984 889999999999999999999999888 8776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.56 E-value=1.3 Score=56.77 Aligned_cols=193 Identities=10% Similarity=0.020 Sum_probs=114.3
Q ss_pred eEEEEEe-CCCcEEEEEeCCCC----eEEEEECCCC-CCceeEeecCCCCceeeEEEecCCeEEEEcCC----CceEEEE
Q psy5806 1047 SIFFDYH-YSKNLIYFADMRSG----NLRTFDMSDS-TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ----MHTINVA 1116 (1332)
Q Consensus 1047 ~~~id~d-~~~~~lY~sd~~~~----~I~~~~l~~g-~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~----~~~I~v~ 1116 (1332)
..++.++ +.+++|.|+....| .|+.+++++| ......+. . ...+++..+.++.||++... ...|.+.
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-G--TNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-E--ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-C--ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 4567788 88887777654443 4999998855 31111111 1 13466776677788887542 1367778
Q ss_pred eeCCce--EEEEecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc--e--EEEEecCCCCcceEEEe
Q psy5806 1117 RSDGQH--KKILVND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY--R--TVLVEEDLAFPNELAID 1188 (1332)
Q Consensus 1117 ~ldG~~--~~~~~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~--~~l~~~~l~~p~glaiD 1188 (1332)
++.+.. ...+... ...-.+++++|...+|+|+.+.. ....|+.+++++.. . +.++... ..+ -..+|
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~-~~s~~ 326 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPRE-KGV-RYDVQ 326 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCCC-TTC-CEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecCC-CCc-eEEEe
Confidence 887542 2233221 12235678999888899987543 35689999998752 2 3333221 222 23455
Q ss_pred -cCCCEEEEEEc----CCCeEEEEecCC-CceEE-EEe---ecccceEEEecCCccccccEEEEEECCCC--EEEEEEe
Q psy5806 1189 -FKQRRLFWADS----TNKRIEYCDFFG-RSRKI-VIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIARE 1255 (1332)
Q Consensus 1189 -~~~~~LY~~d~----~~~~I~~~d~dG-~~~~~-~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~ 1255 (1332)
..+++|||... ...+|.++++++ ...+. ++. .....+++. .+++||++-...+ .|+++++
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~-------~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV-------RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE-------CSSEEEEEEEETTEEEEEEEEC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE-------ECCEEEEEEEeCCEEEEEEEec
Confidence 45888888743 346899999984 34333 443 223456677 6778877765333 5666664
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.56 E-value=8.4 Score=44.02 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=94.8
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-C---------CceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-T---------IRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~---------~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
++.||+.. ..+.|+.+++.+|........... + .....+++ ++.||+... .+.+..+++. |+.+-
T Consensus 188 ~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~-~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 188 FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAY-NGNLTALDLRSGQIMW 263 (376)
T ss_dssp TTEEEECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECT-TSCEEEEETTTCCEEE
T ss_pred CCEEEEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEec-CcEEEEEECCCCcEEe
Confidence 35666643 456677777654443322211100 0 01222344 788998764 4578788874 65443
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-cCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-EDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.. ....+.+++++ .+.||++... +.|..++.......-... ..-......++. +++||+.+ ..+.
T Consensus 264 ~~--~~~~~~~~~~~--~~~l~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~-~~g~ 329 (376)
T 3q7m_A 264 KR--ELGSVNDFIVD--GNRIYLVDQN-------DRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGD-SEGY 329 (376)
T ss_dssp EE--CCCCEEEEEEE--TTEEEEEETT-------CCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEEC-TTSE
T ss_pred ec--cCCCCCCceEE--CCEEEEEcCC-------CeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEe-CCCe
Confidence 22 23445667776 6799998754 368888874333221111 011122234443 68899886 4578
Q ss_pred EEEEecC-CCceEEEEeec--ccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1204 IEYCDFF-GRSRKIVISKV--APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1204 I~~~d~d-G~~~~~~~~~~--~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
|..+|.. |+.+....... .....++ .++.||+... .+.|+.++
T Consensus 330 l~~~d~~tG~~~~~~~~~~~~~~~~~~~-------~~~~l~v~~~-~G~l~~~~ 375 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKVDSSGFQTEPVA-------ADGKLLIQAK-DGTVYSIT 375 (376)
T ss_dssp EEEEETTTCCEEEEEECCTTCBCSCCEE-------ETTEEEEEBT-TSCEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceeCCEE-------ECCEEEEEeC-CCEEEEEe
Confidence 9998875 43322111111 1223456 7889999874 57787776
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.007 Score=54.53 Aligned_cols=40 Identities=25% Similarity=0.683 Sum_probs=33.9
Q ss_pred CCcccCCCCCCc-cccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCS-HLCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCs-hlCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.++|..+++.|. +.|..++++|+|.||.||.+..++++|+
T Consensus 46 ideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86 (86)
T ss_dssp CCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred cccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence 577877666776 6899999999999999999998988885
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.015 Score=51.87 Aligned_cols=40 Identities=30% Similarity=0.924 Sum_probs=31.7
Q ss_pred cccccCC-CCccee-eeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 391 NYQSHCA-PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 391 ~~~n~C~-~g~Csh-lCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
.+.++|. +..|.| .|++.+++|+|.|+.||++ +++.|...
T Consensus 3 ~dideC~~~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~di 44 (82)
T 1emn_A 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDT 44 (82)
T ss_dssp CCCCSSSSTTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEEC
T ss_pred CccccCCCCCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCc
Confidence 3467887 467876 8999999999999999997 57778543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=6.1 Score=46.28 Aligned_cols=223 Identities=9% Similarity=0.008 Sum_probs=122.2
Q ss_pred cccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe
Q psy5806 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP 1084 (1332)
Q Consensus 1006 tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~ 1084 (1332)
+|......+|+....+..|+..++..... ...+.+ ...+.++++ .++.|+ +-...+.|...++.++.....+.
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~--~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLEC---KRILTGHTGSVLCLQY--DERVII-TGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCE---EEEECCCSSCEEEEEC--CSSEEE-EEETTSCEEEEESSSCCEEEEEC
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeE---EEEEcCCCCcEEEEEE--CCCEEE-EEcCCCeEEEEECCCCcEEEEEc
Confidence 34433344555554443377666653321 112222 224567777 344444 44478899999987554333322
Q ss_pred ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eE---EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCc
Q psy5806 1085 LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HK---KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTK 1160 (1332)
Q Consensus 1085 ~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~---~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~ 1160 (1332)
........|+++ ++.| ++-...+.|.++++... .. ..+.........++.+. .+|+.+... +.
T Consensus 211 -~h~~~v~~l~~~--~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d-------g~ 277 (435)
T 1p22_A 211 -HHCEAVLHLRFN--NGMM-VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD-------RT 277 (435)
T ss_dssp -CCCSCEEEEECC--TTEE-EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETT-------SE
T ss_pred -CCCCcEEEEEEc--CCEE-EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC--CEEEEEeCC-------Ce
Confidence 223345555554 5555 45455678999998743 22 22333334566777743 355555432 46
Q ss_pred EEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCcccccc
Q psy5806 1161 IEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1161 I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~ 1238 (1332)
|...++........+.........++++ ++.|+. -...+.|...|+........+. .....+|++ .+.
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-------~~~ 347 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS-GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-------DNK 347 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-------CSS
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE-EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-------cCC
Confidence 7777776555444444333444555554 455544 4567889999987443322222 444566666 566
Q ss_pred EEEEEECCCCEEEEEEecCC
Q psy5806 1239 ELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+|+.. ...+.|...+..++
T Consensus 348 ~l~sg-~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 348 RIVSG-AYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEEE-ETTSCEEEEEHHHH
T ss_pred EEEEE-eCCCcEEEEECCCC
Confidence 55554 46788888887665
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=51.60 Aligned_cols=40 Identities=23% Similarity=0.535 Sum_probs=32.1
Q ss_pred ccccccCC-CCcce-eeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 390 PNYQSHCA-PKVCS-HICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 390 p~~~n~C~-~g~Cs-hlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+...++|. ...|. +.|++.+++|+|.|+.||++.++ ++|+
T Consensus 41 C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C~ 82 (82)
T 1emn_A 41 CVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTCE 82 (82)
T ss_dssp EEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS-SCCC
T ss_pred cCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC-CccC
Confidence 34567776 55665 58999999999999999999888 7773
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.017 Score=58.90 Aligned_cols=41 Identities=27% Similarity=0.789 Sum_probs=34.6
Q ss_pred ccccCC-CCcc-eeeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 392 YQSHCA-PKVC-SHICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 392 ~~n~C~-~g~C-shlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
++|+|+ ...| .+.|++.+++|+|.|+.||+|.+++++|...
T Consensus 2 dideC~~~~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~ 44 (162)
T 1uzk_A 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDT 44 (162)
T ss_dssp CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEECC
T ss_pred ccccCCCCCCCCCCEeECCCCCEEEeCCCCCeECCCCCcccCC
Confidence 357777 4667 4799999999999999999999999999753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=94.45 E-value=10 Score=44.54 Aligned_cols=195 Identities=12% Similarity=0.000 Sum_probs=110.3
Q ss_pred ceEEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCCcee--------------------EeecCCCCceeeEEEecCCeEE
Q psy5806 1046 SSIFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTRIKP--------------------IPLMNDTIRDNFVIDWVANNIY 1104 (1332)
Q Consensus 1046 ~~~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~~~~--------------------i~~~~~~~p~glAvDw~~~~LY 1104 (1332)
.+..+++.+ .++.++++-...+.|...++..+..... +.........-.++.+.++.|+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 356777774 2334555555778888888775432211 0001111112234455466666
Q ss_pred EEcCCCceEEEEeeCC-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcc
Q psy5806 1105 YIDSQMHTINVARSDG-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN 1183 (1332)
Q Consensus 1105 ~td~~~~~I~v~~ldG-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~ 1183 (1332)
.+. ..+.|.++++.. +....+.........++++|...+|+..... +.|...++........+...-....
T Consensus 285 ~~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 285 SGS-YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-------TTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp EEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEe-CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEeCCCCcEE
Confidence 554 456899999874 3333354444568899999966666555432 4677778755444333433334455
Q ss_pred eEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.++++ ++.|. +-...+.|...|+....+..... ......+++ .+.+..|.... .+.|...+..+|
T Consensus 357 ~~~~~--~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~--dg~i~iwd~~~g 422 (464)
T 3v7d_B 357 LLRLS--DKFLV-SAAADGSIRGWDANDYSRKFSYHHTNLSAITTF-----YVSDNILVSGS--ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEC--SSEEE-EEETTSEEEEEETTTCCEEEEEECTTCCCEEEE-----EECSSEEEEEE--TTEEEEEETTTC
T ss_pred EEEEc--CCEEE-EEeCCCcEEEEECCCCceeeeecCCCCccEEEE-----EeCCCEEEEec--CCeEEEEECCCC
Confidence 66665 45554 44567889999997655444443 222333344 11444444443 688999988877
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=94.43 E-value=5.7 Score=44.79 Aligned_cols=195 Identities=11% Similarity=-0.039 Sum_probs=115.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|++.+..|+-+ ...+.|+..++..+.....+. ........+++.+.++.|..+. ..+.|.++++.+.....
T Consensus 78 ~V~~~~~~~~~~~l~s~-s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 78 FVSDLALSQENCFAISS-SWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGECKFS 154 (343)
T ss_dssp CEEEEEECSSTTEEEEE-ETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSCEEEE
T ss_pred ceEEEEECCCCCEEEEE-cCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCCceee
Confidence 36788999887766544 478899999987554333332 2344678899998777776544 46789999998765444
Q ss_pred Ee---cCCCCceEEEEcCCC---------cEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1126 LV---NDLMEPLAIAVYPRR---------GLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1126 ~~---~~~~~P~~iavdp~~---------g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
.. ........++++|.. +.++.+-... +.|..-+..+.....+ ...-.....+++.++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~-~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYTF-KAHESNVNHLSISPNGKY 227 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEEE-ECCSSCEEEEEECTTSSE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEEE-cCccccceEEEECCCCCE
Confidence 32 122346778888753 1233333222 4566666554333222 222345678899988776
Q ss_pred EEEEEcCCCeEEEEecC-CCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1194 LFWADSTNKRIEYCDFF-GRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~d-G~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|.-+ ...+.|...|+. ......... ......|++ .+.+..|.. ...+.|...+..++
T Consensus 228 l~sg-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~-----sp~~~~la~--~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 228 IATG-GKDKKLLIWDILNLTYPQREFDAGSTINQIAF-----NPKLQWVAV--GTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEE-ETTCEEEEEESSCCSSCSEEEECSSCEEEEEE-----CSSSCEEEE--EESSCEEEEESSSC
T ss_pred EEEE-cCCCeEEEEECCCCcccceeecCCCcEEEEEE-----CCCCCEEEE--ECCCCEEEEEeCCC
Confidence 6554 467789888884 332222222 344567777 222333332 23456777776655
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=5.8 Score=46.21 Aligned_cols=196 Identities=10% Similarity=-0.014 Sum_probs=115.7
Q ss_pred ceEEEEEeCCC--cEEEEEeCCCCeEEEEECCCCCCc---------------------------------------eeEe
Q psy5806 1046 SSIFFDYHYSK--NLIYFADMRSGNLRTFDMSDSTRI---------------------------------------KPIP 1084 (1332)
Q Consensus 1046 ~~~~id~d~~~--~~lY~sd~~~~~I~~~~l~~g~~~---------------------------------------~~i~ 1084 (1332)
.+.+++|.+.+ ..|..+ ...+.|+..++..+... ..+.
T Consensus 95 ~V~~l~~~~~~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLS-TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCEEEECCCCSSSEEEEE-ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred ceEEEEEcCCCCcceEEEe-CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 36788999886 455554 46777777665421110 0111
Q ss_pred ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce-EEEE-------ecCCCCceEEEEcCCCcEEEEEecCCCCC
Q psy5806 1085 LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH-KKIL-------VNDLMEPLAIAVYPRRGLLFYSHWGLYDN 1155 (1332)
Q Consensus 1085 ~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~-~~~~-------~~~~~~P~~iavdp~~g~Lywtd~~~~~~ 1155 (1332)
......+..|++.+.++.|..+ ..+.|.++++. +.. ..++ ..-......++++|....++.+-...
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--- 248 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK--- 248 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT---
T ss_pred cCCCcceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC---
Confidence 1223456788998766655544 57899999998 332 2222 12234578999999652444444333
Q ss_pred CCCCcEEEEecCCCce----EEEEecCCC------------CcceEEEecCCCEEEEEEcCCCeEEEEecCC--CceEEE
Q psy5806 1156 SPTTKIEKVYLDGSYR----TVLVEEDLA------------FPNELAIDFKQRRLFWADSTNKRIEYCDFFG--RSRKIV 1217 (1332)
Q Consensus 1156 ~~~~~I~r~~ldG~~~----~~l~~~~l~------------~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG--~~~~~~ 1217 (1332)
+.|...++..... ...+..... ....|+++++++.|..+.. +.|...|+.. .....+
T Consensus 249 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 249 ---GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp ---SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCE
T ss_pred ---CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCcccccee
Confidence 4677777765443 233332222 5678999988877776654 8899999863 322222
Q ss_pred Eeecc----------------cceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1218 ISKVA----------------PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1218 ~~~~~----------------P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
..... .+.+++ .+.+.+| .+-...+.|...+..++
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~-----s~~~~~l-~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCW-----NGSDSVV-MTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEE-----CTTSSEE-EEECSTTEEEEEETTTC
T ss_pred eccccccccccccccccccccceEEEE-----CCCCCEE-EEeccCCEEEEEEcCCC
Confidence 21111 233777 2334455 56667889999998877
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.015 Score=58.94 Aligned_cols=41 Identities=29% Similarity=0.659 Sum_probs=35.6
Q ss_pred CCcccCC-CCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 969 PNACGSN-NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 969 ~n~C~~~-nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
.++|... ++.|+|.|..+++++.|.|+.||.|..|+++|..
T Consensus 117 ~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 117 INECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp CCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 5678764 4789999999999999999999999999999973
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.20 E-value=9.9 Score=43.40 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=102.6
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecC----CCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCC
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN----DTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDL 1130 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~----~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~ 1130 (1332)
++.||+.. ..+.|+.+++.+|.......... .......+++ .+.||+.. ..+.|..+++. |+.+-......
T Consensus 143 ~~~v~v~~-~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 DGLVLIHT-SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp TTEEEEEC-TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEc-CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEeccc
Confidence 45677654 56678888876554433322111 0011345565 67888764 35678888874 66543321110
Q ss_pred C-----------CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1131 M-----------EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1131 ~-----------~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
. .....+++ .+.||+.... +.|..+++.... .+....+..+.+++++ +++||++..
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~-------g~l~~~d~~tG~--~~w~~~~~~~~~~~~~--~~~l~~~~~ 285 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVV--NGVVFALAYN-------GNLTALDLRSGQ--IMWKRELGSVNDFIVD--GNRIYLVDQ 285 (376)
T ss_dssp -----------CCCCCCEEE--TTEEEEECTT-------SCEEEEETTTCC--EEEEECCCCEEEEEEE--TTEEEEEET
T ss_pred CCCCcccccccccCCCcEEE--CCEEEEEecC-------cEEEEEECCCCc--EEeeccCCCCCCceEE--CCEEEEEcC
Confidence 0 00111222 5788887643 468888874323 2233334455667775 789999874
Q ss_pred CCCeEEEEecC-CCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1200 TNKRIEYCDFF-GRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1200 ~~~~I~~~d~d-G~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.+.|..+|.. |..+-..-. .....+.++ .++.||+.+. .+.|+.++..+|
T Consensus 286 -~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-------~~~~l~v~~~-~g~l~~~d~~tG 338 (376)
T 3q7m_A 286 -NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-------YNGNLVVGDS-EGYLHWINVEDG 338 (376)
T ss_dssp -TCCEEEEETTTCCEEEEECTTTTSCCCCCEE-------ETTEEEEECT-TSEEEEEETTTC
T ss_pred -CCeEEEEECCCCcEEEeecccCCCcccCCEE-------ECCEEEEEeC-CCeEEEEECCCC
Confidence 5689999985 433222111 223445677 7899999975 578999999888
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.18 E-value=8.6 Score=42.63 Aligned_cols=199 Identities=7% Similarity=-0.063 Sum_probs=115.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee----EeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP----IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~----i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~ 1121 (1332)
.+.+|+|+|.++.+.++-...++|+.-++..+..... .+......+..+++.+.++.|+.+. ..+.|.+.+....
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-~d~~i~~~~~~~~ 118 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-WDGTLRLWDLTTG 118 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-ccccceEEeeccc
Confidence 3679999998766666666788898888764332211 1111234678899988777776554 4567888888765
Q ss_pred eEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcceEEEecCC-CEEEEEE
Q psy5806 1122 HKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFKQ-RRLFWAD 1198 (1332)
Q Consensus 1122 ~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~~-~~LY~~d 1198 (1332)
.... ..........+...+....|+..... ..+...++.+.....+.... ......+++.+.. ..++.+-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-------~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-------KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSCEEEEETT-------SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ceeeeecCCCCceeEEEEeecCccceeecCC-------CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 5444 43444566777777765555544332 34555566555443332211 2334456665544 3445555
Q ss_pred cCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...+.|...|+.......... .....+|++ .+ ++.+.++-...+.|...+..++
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV-----SP-DGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-----CT-TSSEEEEEETTCEEEEEETTTT
T ss_pred cCCCEEEEEECCCCceeeEecCCCCcEEEEEE-----CC-CCCEEEEEeCCCeEEEEEeccC
Confidence 566778888886543322222 444567777 22 3334444446677777776665
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=94.11 E-value=10 Score=44.44 Aligned_cols=183 Identities=9% Similarity=0.028 Sum_probs=106.2
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEe
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILV 1127 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~ 1127 (1332)
.+.++ ++.|+... ..+.|+..++.++.....+ ....+....++++ ++.| ++-...+.|.++++. |+....+.
T Consensus 124 ~~~~~--g~~l~sg~-~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 124 CLQFC--GNRIVSGS-DDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR--DNII-ISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp EEEEE--TTEEEEEE-TTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE--TTEE-EEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEc--CCEEEEEE-CCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec--CCEE-EEEeCCCeEEEEECCcCcEEEEEC
Confidence 45454 55555554 7888999998754333222 2223355667776 5544 555566789999987 44444454
Q ss_pred cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1128 NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1128 ~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
........+++++ ..|+..... +.|...++........+.........+++ +++.|+.+ ...+.|...
T Consensus 197 ~h~~~v~~~~~~~--~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~dg~i~iw 264 (445)
T 2ovr_B 197 GHTSTVRCMHLHE--KRVVSGSRD-------ATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG-AYDFMVKVW 264 (445)
T ss_dssp CCSSCEEEEEEET--TEEEEEETT-------SEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE-ETTSCEEEE
T ss_pred CCCCcEEEEEecC--CEEEEEeCC-------CEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE-cCCCEEEEE
Confidence 4444567788875 345444332 46777777655544444433344555655 45555554 467788888
Q ss_pred ecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1208 DFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1208 d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|+.......... .....++++ .+.+|+... ..+.|...+..++
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~-~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF-------DGIHVVSGS-LDTSIRVWDVETG 309 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE-------CSSEEEEEE-TTSCEEEEETTTC
T ss_pred ECCCCcEeEEecCCCCceEEEEE-------CCCEEEEEe-CCCeEEEEECCCC
Confidence 886443222222 344456666 566555554 5677888887766
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=11 Score=43.90 Aligned_cols=192 Identities=11% Similarity=0.047 Sum_probs=107.1
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~ 1125 (1332)
+..+++ .++.|... ...+.|+..++.++.....+. ...+.+..|++| ++.| ++-...+.|.++++. |+....
T Consensus 136 v~~~~~--d~~~l~~g-~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l-~sg~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 136 VYCLQY--DDQKIVSG-LRDNTIKIWDKNTLECKRILT-GHTGSVLCLQYD--ERVI-ITGSSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp EEEEEC--CSSEEEEE-ESSSCEEEEESSSCCEEEEEC-CCSSCEEEEECC--SSEE-EEEETTSCEEEEESSSCCEEEE
T ss_pred EEEEEE--CCCEEEEE-eCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEEC--CCEE-EEEcCCCeEEEEECCCCcEEEE
Confidence 455655 34445444 477889999877543333322 223345555553 5555 555566789999997 544444
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE---EEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV---LVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~---l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
+.........|++++ +.|+.... . +.|...++....... .....-.....+++ +++.|+.+ ...+
T Consensus 209 ~~~h~~~v~~l~~~~--~~l~s~s~-d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~-~~dg 276 (435)
T 1p22_A 209 LIHHCEAVLHLRFNN--GMMVTCSK-D------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA-SGDR 276 (435)
T ss_dssp ECCCCSCEEEEECCT--TEEEEEET-T------SCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE-ETTS
T ss_pred EcCCCCcEEEEEEcC--CEEEEeeC-C------CcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE-eCCC
Confidence 544445567777765 35544432 2 457777776544332 22222233445555 46666655 4567
Q ss_pred eEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1203 RIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|...|+........+. ......++. .+..|+ +-...+.|...+..++ .....+.
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~-~g~~dg~i~iwd~~~~---~~~~~~~ 333 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY-------RDRLVV-SGSSDNTIRLWDIECG---ACLRVLE 333 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE-------ETTEEE-EEETTSCEEEEETTTC---CEEEEEC
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe-------CCCEEE-EEeCCCeEEEEECCCC---CEEEEEe
Confidence 89998886543322222 334455555 444444 4446778888887776 4444444
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=11 Score=46.15 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=49.8
Q ss_pred ceEEEecCCCEEEEEEc------------------------------------CCCeEEEEecC-CCceEEEEeecccce
Q psy5806 1183 NELAIDFKQRRLFWADS------------------------------------TNKRIEYCDFF-GRSRKIVISKVAPYG 1225 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d~------------------------------------~~~~I~~~d~d-G~~~~~~~~~~~P~g 1225 (1332)
.++++|+++++||+... ..+.|..+|+. |+.+-.+-....+.+
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~ 468 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG 468 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc
Confidence 35899999999999742 24678888875 443322211222233
Q ss_pred --EEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1226 --LSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1226 --lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
++. .++.||+.. ..+.|+.+|..+| +.+..+..
T Consensus 469 ~~~~t-------~gg~v~~g~-~dg~l~a~D~~tG---~~lw~~~~ 503 (571)
T 2ad6_A 469 GTLYT-------KGGLVWYAT-LDGYLKALDNKDG---KELWNFKM 503 (571)
T ss_dssp BCEEE-------TTTEEEEEC-TTSEEEEEETTTC---CEEEEEEC
T ss_pred eeEEE-------CCCEEEEEc-CCCeEEEEECCCC---CEEEEEeC
Confidence 344 688899864 6789999999998 65555443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.95 E-value=1.9 Score=55.15 Aligned_cols=198 Identities=9% Similarity=0.004 Sum_probs=115.4
Q ss_pred ceEEEEEeCC--CcEEEEEeCCCCeEEEEECCCCCCcee-EeecCCCCceeeEEEec--CCeEEEEcCCCceEEEEeeCC
Q psy5806 1046 SSIFFDYHYS--KNLIYFADMRSGNLRTFDMSDSTRIKP-IPLMNDTIRDNFVIDWV--ANNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1046 ~~~~id~d~~--~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~~~~~p~glAvDw~--~~~LY~td~~~~~I~v~~ldG 1120 (1332)
.+.+++|.+. ++.|+.+. ..+.|+..++.++..... ........+..+++.+. ++.| ++-...+.|.++++..
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCS-YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-LVASSDGKVSVVEFKE 132 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-EEEETTSEEEEEECCS
T ss_pred ceEEEEecCCCCCCEEEEEe-CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEE-EEEeCCCcEEEEEeec
Confidence 4678899876 55555544 678888888774331122 22223446788999877 4455 4545667999999975
Q ss_pred c---eEEEEecCCCCceEEEEcCC------------CcEEEEEecCCCCCCCCCcEEEEecCCCceE-EE---EecCCCC
Q psy5806 1121 Q---HKKILVNDLMEPLAIAVYPR------------RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT-VL---VEEDLAF 1181 (1332)
Q Consensus 1121 ~---~~~~~~~~~~~P~~iavdp~------------~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~-~l---~~~~l~~ 1181 (1332)
. ....+.........++++|. ++.++.+.... +.|...++...... .+ +...-..
T Consensus 133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT------SCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC------CeEEEEeccCCcccceeeeeecCCCCc
Confidence 4 22224344456788999995 35555554333 45666666443221 12 2222345
Q ss_pred cceEEEecCC--CEEEEEEcCCCeEEEEecCCCce---EEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1182 PNELAIDFKQ--RRLFWADSTNKRIEYCDFFGRSR---KIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1182 p~glaiD~~~--~~LY~~d~~~~~I~~~d~dG~~~---~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
...|++.++. +.+..+-...+.|...|+..... ..+.. .....++++ .+.+. ++++-...+.|..
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-----spdg~-~l~s~s~Dg~I~v 280 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW-----SLSGN-VLALSGGDNKVTL 280 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEE-----CTTTC-CEEEECSSSCEEC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEE-----cCCCC-EEEEEcCCCEEEE
Confidence 6788898873 45555556778899888875421 11111 344567777 22333 4444456777877
Q ss_pred EEecC
Q psy5806 1253 AREKS 1257 (1332)
Q Consensus 1253 ~~~~~ 1257 (1332)
.+..+
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 77654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.87 E-value=2.2 Score=54.51 Aligned_cols=201 Identities=7% Similarity=-0.026 Sum_probs=117.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE-eecCCCCceeeEEEecC-CeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMNDTIRDNFVIDWVA-NNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~~~p~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+..++|++.++.|+.+. ..+.|...++.+++..... .....+.+..|++.... +++.++-...+.|.++++++...
T Consensus 11 ~V~~l~~s~dg~~latg~-~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CEEEECCCSSSCCEEEEE-TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred eeEEEEECCCCCeEEEEE-CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 357888888877666654 6788888776633322221 21223456778876551 44445555677899999986532
Q ss_pred ---EEEecCCCCceEEEEcCCC-cEEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcceEEEecC-------
Q psy5806 1124 ---KILVNDLMEPLAIAVYPRR-GLLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPNELAIDFK------- 1190 (1332)
Q Consensus 1124 ---~~~~~~~~~P~~iavdp~~-g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~glaiD~~------- 1190 (1332)
..+.........++++|.. |.++.+-... +.|...++.... ....+.........+++.+.
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 2233344567899999962 4444443332 467777776542 22233333345667777773
Q ss_pred -----CCEEEEEEcCCCeEEEEecCCCc-e-EEEEe----ecccceEEEecCCccccc--cEEEEEECCCCEEEEEEecC
Q psy5806 1191 -----QRRLFWADSTNKRIEYCDFFGRS-R-KIVIS----KVAPYGLSVRQSPGKAFI--VELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1191 -----~~~LY~~d~~~~~I~~~d~dG~~-~-~~~~~----~~~P~glav~~~~~~~~~--~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
++.+..+-...+.|...|+.... . ..+.. .....+|++ .+.+ +.+..+-...+.|...+..+
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~-----sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-----SPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE-----CCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe-----ccCCCCCCEEEEEecCCEEEEecCCC
Confidence 23444444567889988886442 2 22222 344567777 2221 44555555678888888876
Q ss_pred C
Q psy5806 1258 D 1258 (1332)
Q Consensus 1258 g 1258 (1332)
+
T Consensus 239 ~ 239 (753)
T 3jro_A 239 E 239 (753)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=10 Score=42.26 Aligned_cols=143 Identities=4% Similarity=-0.062 Sum_probs=79.4
Q ss_pred CCCccceeEecCC--CeEEEEeCCCCeEEEEeCCC--CceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEE
Q psy5806 781 LNRTESIAVDAIG--RKIYWTDMNAQTIMVSDIDG--KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856 (1332)
Q Consensus 781 ~~~p~glAvD~~~--~nLYwtD~~~~~I~v~~ldG--~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r 856 (1332)
-..+..+++.... +++.++-...+.|.+.+++. ......+........+++++|...+|+.... . ..|..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d----g~v~i 112 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC--D----KTAKM 112 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--T----SEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC--C----CcEEE
Confidence 3455667777664 45666666677899998864 3321233323356789999997556665442 2 45766
Q ss_pred EecCCCCcEEEecccccCceeEE--eCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEe
Q psy5806 857 AHMDGTNRAVFETEVIWPSCLAI--DYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTD 931 (1332)
Q Consensus 857 ~~~dG~~~~~l~~~l~~P~gl~i--D~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD 931 (1332)
.+++......+...-.....+++ ...+ +++++-...+.|...++...........-.....+....+.++...
T Consensus 113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNY--SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEEECSSC--EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred EEcCCCCceeeccccCceEEEEEEeCCCC--CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence 67665443333322444557777 5544 4444444567888888754433222222223445555555544443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=93.57 E-value=11 Score=41.74 Aligned_cols=196 Identities=9% Similarity=-0.071 Sum_probs=113.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|++.++.|+... ..+.|...+...+ ...............+++...++.|+.+ ...+.+.+.++.+.....
T Consensus 88 ~V~~~~~s~dg~~l~s~~-~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGS-WDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSG-SRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEE
T ss_pred CEEEEEECCCCCEEEEEc-ccccceEEeeccc-ceeeeecCCCCceeEEEEeecCccceee-cCCCeEEEEEeCCCceEE
Confidence 467899999888777665 6778888886632 2222222334455566666656666544 445678888887665544
Q ss_pred E--ecCCCCceEEEEcCCCcE-EEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1126 L--VNDLMEPLAIAVYPRRGL-LFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1126 ~--~~~~~~P~~iavdp~~g~-Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
. .........+++.+.... ++.+-... ..|...++........+...-...+.|+++++++.|+-+ ...+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~Dg 237 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG-GKDG 237 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTC
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE-eCCC
Confidence 2 222345667777765433 44443322 457777776655444443333456788999877766655 4667
Q ss_pred eEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1203 RIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|...|+.......... ......+++ ..+++ +++-...+.|...+..++
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~v~~~~~------~~~~~-~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGDIINALCF------SPNRY-WLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEE------CSSSS-EEEEEETTEEEEEETTTT
T ss_pred eEEEEEeccCceeeeecCCceEEeeec------CCCCc-eeeccCCCEEEEEECCCC
Confidence 88888887544333333 334445555 11223 233334567777776554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=93.51 E-value=14 Score=42.85 Aligned_cols=244 Identities=10% Similarity=0.042 Sum_probs=133.5
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
...|.++..+. |+.-++.+..... +....+ ...+.+|+|++.++.|.... ..+.|...++.++.....+ ....
T Consensus 116 ~n~lAvgld~t-V~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs-~Dg~v~iWd~~~~~~~~~~---~~h~ 189 (420)
T 4gga_A 116 GNVLAVALDNS-VYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQQKRLRNM---TSHS 189 (420)
T ss_dssp TSEEEEEETTE-EEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEE---CCCS
T ss_pred CCEEEEEeCCE-EEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEE-CCCeEEEEEcCCCcEEEEE---eCCC
Confidence 34555555555 6666655432211 112222 23478999999888776654 7788999997744322222 1222
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE--EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK--ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~--~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
..-.++.|.+..| ++....+.+.+.+....... .+.........+...|...+|.... .. +.|...++..
T Consensus 190 ~~v~~~s~~~~~l-~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~-~D------~~v~i~~~~~ 261 (420)
T 4gga_A 190 ARVGSLSWNSYIL-SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG-ND------NLVNVWPSAP 261 (420)
T ss_dssp SCEEEEEEETTEE-EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-TT------SCEEEEESSC
T ss_pred CceEEEeeCCCEE-EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee-cc------ccceEEeecc
Confidence 2334555546655 44445667878877643332 2444456678889998655554433 22 3455555533
Q ss_pred Cce----EEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEE
Q psy5806 1169 SYR----TVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELY 1241 (1332)
Q Consensus 1169 ~~~----~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lY 1241 (1332)
... .............+++.+.+..++.+-. ..+.|...|+........+. ...+.++.. ...+++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~-----~~~~~~lv 336 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW-----SPHYKELI 336 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE-----ETTTTEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee-----cCCCCeEE
Confidence 221 1111212234556777776666655432 35678877876443333333 445555655 23456666
Q ss_pred EEE-CCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1242 WTD-WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1242 wtd-~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
.+. ...+.|...+..++ ..+..+......+..|
T Consensus 337 ~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l 370 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSL 370 (420)
T ss_dssp EEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred EEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEE
Confidence 664 35688888888777 5555555444444444
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=93.51 E-value=0.041 Score=41.11 Aligned_cols=33 Identities=27% Similarity=0.917 Sum_probs=23.1
Q ss_pred ccCCCCccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 394 SHCAPKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 394 n~C~~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
++|....|.+ .|++..++|+|.||.||+ |+.|+
T Consensus 4 d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~----G~~Ce 38 (39)
T 1edm_B 4 DQCESNPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CTTTTCCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred ccCCCCCCCCCCEeEcCCCceEeECCCCCc----CCccC
Confidence 4444334432 677788999999999996 55664
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.042 Score=62.68 Aligned_cols=45 Identities=33% Similarity=0.864 Sum_probs=39.0
Q ss_pred Ccc-ccccCCC---CcceeeeccCCCceEEeCCCCceecCCCCCcCCCc
Q psy5806 389 QPN-YQSHCAP---KVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESP 433 (1332)
Q Consensus 389 qp~-~~n~C~~---g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~~~ 433 (1332)
.++ +.++|.. +.|.|.|++..++|+|.|+.||.+..++++|.+..
T Consensus 38 ~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~ 86 (317)
T 3h5c_B 38 NCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHD 86 (317)
T ss_dssp SSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECS
T ss_pred ccccCcccCCCCCCCCCcCccccCCCeeEEecccccccccccccccccc
Confidence 344 6789984 78999999999999999999999999999997643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.37 E-value=4.9 Score=52.51 Aligned_cols=192 Identities=8% Similarity=-0.010 Sum_probs=118.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee-cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL-MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~-~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~ 1123 (1332)
.+..++|++.++.|.... ..+.|+..+... .+.+.. ........|++.+ ++.|. +-...+.|.+++++ ++..
T Consensus 19 ~V~~lafspdg~~lAsgs-~Dg~I~lw~~~~---~~~~~~~~~~~~V~~l~fsp-g~~L~-S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQ---VEVVIKLEDRSAIKEMRFVK-GIYLV-VINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSEEEEECSTT---CEEEEECSSCCCEEEEEEET-TTEEE-EEETTCEEEEEETTTCSEE
T ss_pred CcEEEEECCCCCEEEEEe-CCCEEEEEeCCC---cEEEEEcCCCCCEEEEEEcC-CCEEE-EEECcCeEEEEECCCCcEE
Confidence 367999999988776655 678888887542 222221 2334578899997 55454 44456799999997 4444
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE-E----------ecCCCCcceEEEecCCC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL-V----------EEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l-~----------~~~l~~p~glaiD~~~~ 1192 (1332)
..+. .......++++|...+|+..... +.|...++++...... + .........|++.+++.
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~d-------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQN-------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETT-------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCC-------CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 4443 23567899999977777776543 4677778876553211 1 01123466889988655
Q ss_pred EEEEEEcCCCeEEEEecCCCceEEEEe-e-------------------cccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1193 RLFWADSTNKRIEYCDFFGRSRKIVIS-K-------------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d~dG~~~~~~~~-~-------------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
.+..+-...+.| ..|+........+. . ....++++ + + ++.++.+-...+.|..
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f--s---p-dg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY--H---P-NSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE--C---T-TSSEEEEEETTCCEEE
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE--c---C-CCCEEEEEECCCeEEE
Confidence 555555667778 77886543222221 1 22456677 1 2 2344445556777888
Q ss_pred EEecCC
Q psy5806 1253 AREKSD 1258 (1332)
Q Consensus 1253 ~~~~~g 1258 (1332)
.+..+|
T Consensus 238 Wd~~~g 243 (902)
T 2oaj_A 238 WDANSG 243 (902)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 877665
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.019 Score=57.48 Aligned_cols=40 Identities=35% Similarity=0.895 Sum_probs=34.5
Q ss_pred CCcccCCCCCCcc-ccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSH-LCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCsh-lCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.++|..+++.|.+ .|+.++++|+|.||.||.+..++++|+
T Consensus 107 ideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 107 IDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp CCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred cccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 4677766677875 899999999999999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.97 E-value=9.2 Score=43.01 Aligned_cols=157 Identities=9% Similarity=-0.007 Sum_probs=95.2
Q ss_pred ceEEEEEeC--CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ce
Q psy5806 1046 SSIFFDYHY--SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QH 1122 (1332)
Q Consensus 1046 ~~~~id~d~--~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~ 1122 (1332)
.+..+++++ .++.+... ...+.|+..++..+................+++.+.+..| .+-...+.|.++++.. +.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l-asg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWA-DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL-ALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp CEEEEECCC---CCEEEEE-ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE-EEECTTSCEEEEESSCTTS
T ss_pred CEEEEEcCCCCCCCEEEEE-eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCCCCC
Confidence 467888988 66555444 4788899999875443222211222357788998755544 5545677999999974 43
Q ss_pred E-EEEec-CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec---CCCCc--ceEEEecCCCEEE
Q psy5806 1123 K-KILVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE---DLAFP--NELAIDFKQRRLF 1195 (1332)
Q Consensus 1123 ~-~~~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~---~l~~p--~glaiD~~~~~LY 1195 (1332)
. ..+.. -......|+++|...+|..+. . ..|..-++........+.. ..... ..++++++++.|.
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC--D------QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE--S------SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe--C------CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 3 33433 245688999999655555554 2 2577777755443211110 00111 2499999888888
Q ss_pred EEEcCCCeEEEEecCCC
Q psy5806 1196 WADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~ 1212 (1332)
.+....+.|...+++..
T Consensus 277 ~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEETTTTEEEEEEECTT
T ss_pred EecCCCCcEEEEEEccc
Confidence 76655778888888643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.87 E-value=14 Score=41.18 Aligned_cols=198 Identities=9% Similarity=0.017 Sum_probs=104.2
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC----cee--EeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR----IKP--IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~----~~~--i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
..+.+++|++.++.|.-.. ..+.|+..++..+.. .+. .+.........+++.+.++.|. +-...+.|.++++
T Consensus 59 ~~v~~v~~sp~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~la-s~s~D~~v~iwd~ 136 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA-TCSRDKSVWIWET 136 (330)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEE-EEETTSCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEe-CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEE-EEeCCCEEEEEec
Confidence 3467999999887666554 677888877642111 111 1212234577899987666664 4445678999998
Q ss_pred C-C-ce---EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC--ceEEEEecCCCCcceEEEecCC
Q psy5806 1119 D-G-QH---KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS--YRTVLVEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1119 d-G-~~---~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~--~~~~l~~~~l~~p~glaiD~~~ 1191 (1332)
+ + .. ...+..-......|+++|...+|.-+... ..|..-++... .....+...-.....++++++.
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-------~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-------DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-------CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence 4 2 21 22243333567899999965555444332 23433333222 1222232223445677787763
Q ss_pred -CEEEEEEcCCCeEEEEecCCCc-----e-EEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1192 -RRLFWADSTNKRIEYCDFFGRS-----R-KIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1192 -~~LY~~d~~~~~I~~~d~dG~~-----~-~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
..+..+-...+.|...++.+.. . ..+.. ......++. ..++ ++.+-...+.|...+..++
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~------s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW------GFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE------CTTS-CEEEEETTSCEEEEEEETT
T ss_pred CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE------cCCC-EEEEEeCCCEEEEEEcCCC
Confidence 2333444556677776664321 0 11111 223456666 1233 3445456778887776655
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.032 Score=61.06 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=33.5
Q ss_pred ccccccCC--CCccee--eeccCCCceEEeCCCCceecCCCCCcCCCccce
Q psy5806 390 PNYQSHCA--PKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCSESPEEL 436 (1332)
Q Consensus 390 p~~~n~C~--~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~~~~~~~ 436 (1332)
|.+.|+|. ...|++ .|.|.+++|+|.|+.||. .||++|.+...|.
T Consensus 2 ~~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~Pq 50 (285)
T 1gl4_A 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQ 50 (285)
T ss_dssp -----CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEETTCEE
T ss_pred CccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCCCCCCc
Confidence 56789998 678974 699999999999999998 5799998765543
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.062 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=29.0
Q ss_pred ccccCCCCcceeeeccC-CCceEEeCCCCceec
Q psy5806 392 YQSHCAPKVCSHICLPN-KHRFTCQCPLGLTLS 423 (1332)
Q Consensus 392 ~~n~C~~g~CshlCl~~-~~~~~C~C~~G~~L~ 423 (1332)
++|+|.+..|.|.|++. +++|+|.|+.||++.
T Consensus 3 dideC~~~pC~~~C~~~~~g~y~C~C~~Gy~g~ 35 (118)
T 1dx5_I 3 PVDPCFRANCEYQCQPLDQTSYLCVCAEGFAPI 35 (118)
T ss_dssp CCCGGGGCCCSSEEEECSSSCEEEECCTTEEEE
T ss_pred ccccCCCCCCCCCCCCCCCCCEEeECCCCcccc
Confidence 46889888899999999 899999999999976
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=92.18 E-value=0.068 Score=53.08 Aligned_cols=42 Identities=14% Similarity=0.488 Sum_probs=35.0
Q ss_pred cccccCC--CCcce--eeeccCCCceEEeCCCCceecCCCCCcCCC
Q psy5806 391 NYQSHCA--PKVCS--HICLPNKHRFTCQCPLGLTLSPDNKSCSES 432 (1332)
Q Consensus 391 ~~~n~C~--~g~Cs--hlCl~~~~~~~C~C~~G~~L~~d~~tC~~~ 432 (1332)
..+++|. ...|. +.|++.+++|+|.|+.||++..++++|...
T Consensus 94 ~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~ 139 (143)
T 2bou_A 94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139 (143)
T ss_dssp EECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTT
T ss_pred CCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccC
Confidence 3457776 46676 689999999999999999999999999764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=92.13 E-value=6.2 Score=46.56 Aligned_cols=199 Identities=7% Similarity=-0.078 Sum_probs=114.9
Q ss_pred ceEEEEEeCCCcEEEE---EeCCCCeEEEEECCCC-----CCce---eEee-c-CCCCceeeEEEecCCeEEEEcCCCce
Q psy5806 1046 SSIFFDYHYSKNLIYF---ADMRSGNLRTFDMSDS-----TRIK---PIPL-M-NDTIRDNFVIDWVANNIYYIDSQMHT 1112 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~---sd~~~~~I~~~~l~~g-----~~~~---~i~~-~-~~~~p~glAvDw~~~~LY~td~~~~~ 1112 (1332)
.+..++|++.++.|++ +....+.|+..++.++ ...+ .+.. . ....+.+|++.+..++++.+-...+.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 4789999999998887 5555678888876532 1100 1111 1 13467889988776777787777889
Q ss_pred EEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CC-----CcceE
Q psy5806 1113 INVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LA-----FPNEL 1185 (1332)
Q Consensus 1113 I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~-----~p~gl 1185 (1332)
|.++++....... ...-...+..++.+|...+|+.... . +.|...++.|.....+.... .. ....|
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-N------GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-T------SCEEEECTTCCEEEEECCCTTCCTTSCEEEEEE
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-C------CcEEEEccCCcccccccCCcccCCCCceeEEEE
Confidence 9999998553332 2222356899999997555555543 2 56888888765443332111 11 23455
Q ss_pred EEecCCCEEEEEEcCCC------eEEEEecCCCc---eEEEEe---e------cccceE---EEecCCccccccEEEEEE
Q psy5806 1186 AIDFKQRRLFWADSTNK------RIEYCDFFGRS---RKIVIS---K------VAPYGL---SVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1186 aiD~~~~~LY~~d~~~~------~I~~~d~dG~~---~~~~~~---~------~~P~gl---av~~~~~~~~~~~lYwtd 1244 (1332)
+.+.....|.......+ .+...++.... ...... . .++-.+ .+ ..-+.+|+++
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l------~dw~l~~v~s 320 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYI------EEWDLVLAAS 320 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEE------GGGTEEEEEE
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehh------ccCCEEEEec
Confidence 55544333322333332 25566665321 112111 1 111122 22 2447899999
Q ss_pred CCCCEEEEEEecC
Q psy5806 1245 WEAMSVVIAREKS 1257 (1332)
Q Consensus 1245 ~~~~~V~~~~~~~ 1257 (1332)
..+..|..+.+..
T Consensus 321 ~~s~dv~vl~~~~ 333 (434)
T 2oit_A 321 AASTEVSILARQS 333 (434)
T ss_dssp TTCSBCEEEEECT
T ss_pred CCCCceeEEEecC
Confidence 9999888887654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=9.7 Score=47.85 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=80.8
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCC----------CCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND----------TIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~----------~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
+++||+... .+.|+.+++.+|......-.... ....+++++ ++.||+... .+++..++.. |+.+-
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~-dg~l~alD~~tG~~~W 152 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALDAATGKEVW 152 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred CCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--CCEEEEEcC-CCEEEEEECCCCCEEe
Confidence 467777653 45677777654443322211100 123578887 899999854 4678888874 77543
Q ss_pred EEecC------CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCceEEEEecC--C--------------CC
Q psy5806 1125 ILVND------LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYRTVLVEED--L--------------AF 1181 (1332)
Q Consensus 1125 ~~~~~------~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~~~l~~~~--l--------------~~ 1181 (1332)
..... .......++. .+.||+...+.. ....+.|+.++. +|+.+-.+-... . .+
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 153 HQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eecCCcCcCcCcccccCcEEE--CCEEEEEecccc-cCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 32221 0011112222 578888765320 001356777776 454433221100 0 01
Q ss_pred c---------------ceEEEecCCCEEEEEEcCC------------------CeEEEEecCC
Q psy5806 1182 P---------------NELAIDFKQRRLFWADSTN------------------KRIEYCDFFG 1211 (1332)
Q Consensus 1182 p---------------~glaiD~~~~~LY~~d~~~------------------~~I~~~d~dG 1211 (1332)
+ ..+++|++.++||+..... +.|..+|.+.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T 292 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT 292 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence 1 3579999999999985431 2588888873
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.05 E-value=15 Score=46.12 Aligned_cols=67 Identities=6% Similarity=-0.080 Sum_probs=42.6
Q ss_pred eEEEecCCCEEEEEEc-----------------------------------CCCeEEEEecCCCceEEEEe-ecccc--e
Q psy5806 1184 ELAIDFKQRRLFWADS-----------------------------------TNKRIEYCDFFGRSRKIVIS-KVAPY--G 1225 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~-----------------------------------~~~~I~~~d~dG~~~~~~~~-~~~P~--g 1225 (1332)
++++|++++.+|+... ..+.|..+|+......--.. ..... .
T Consensus 385 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~ 464 (668)
T 1kv9_A 385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGT 464 (668)
T ss_dssp CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCE
T ss_pred cceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCce
Confidence 4899999999998421 12668888875332211112 22222 3
Q ss_pred EEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1226 LSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1226 lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++. .++.||+.+ ..+.|+.++..+|
T Consensus 465 ~~t-------~gg~vf~g~-~dg~l~a~d~~tG 489 (668)
T 1kv9_A 465 LST-------AGNLVFQGT-AAGQMHAYSADKG 489 (668)
T ss_dssp EEE-------TTTEEEEEC-TTSEEEEEETTTC
T ss_pred eEe-------CCCEEEEEC-CcccchhhhhhcC
Confidence 555 778888874 5688888888887
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.52 E-value=4.3 Score=51.83 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCCC----eEEEEECC--CCC--CceeEeecCC-----C--CceeeEEE-ecCCeEEEEcCCC----ceEE
Q psy5806 1055 SKNLIYFADMRSG----NLRTFDMS--DST--RIKPIPLMND-----T--IRDNFVID-WVANNIYYIDSQM----HTIN 1114 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~----~I~~~~l~--~g~--~~~~i~~~~~-----~--~p~glAvD-w~~~~LY~td~~~----~~I~ 1114 (1332)
.++++||+-...+ .+++.+.. ++. ..++++..+. + ...+.++. +.++.|.|+.... ..|.
T Consensus 125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~ 204 (751)
T 2xe4_A 125 YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIE 204 (751)
T ss_dssp ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEE
T ss_pred ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEE
Confidence 4678888764333 36777751 244 4455554221 1 34567888 8888777664322 3599
Q ss_pred EEeeCCc-eEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce--EEEEec-CCCCcceEEEe
Q psy5806 1115 VARSDGQ-HKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR--TVLVEE-DLAFPNELAID 1188 (1332)
Q Consensus 1115 v~~ldG~-~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~--~~l~~~-~l~~p~glaiD 1188 (1332)
+.++++. .... +.. ...+++.+|....||++.... .....+|++.++++... +.++.. +-..-.++.+.
T Consensus 205 v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~--~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 205 FKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDE--TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp EEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECT--TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred EEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECC--CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 9999865 3111 211 124678888777888886432 11124799999987652 334332 11233467788
Q ss_pred cCCCEEEEEEcC--CCeEEEEecCCC--ce--EEEEe-ec-ccceEEEecCCccccccEEEEEEC----CCCEEEEEEec
Q psy5806 1189 FKQRRLFWADST--NKRIEYCDFFGR--SR--KIVIS-KV-APYGLSVRQSPGKAFIVELYWTDW----EAMSVVIAREK 1256 (1332)
Q Consensus 1189 ~~~~~LY~~d~~--~~~I~~~d~dG~--~~--~~~~~-~~-~P~glav~~~~~~~~~~~lYwtd~----~~~~V~~~~~~ 1256 (1332)
++++.|+|+... ...|+.+|+++. .. +.+.. .. .-+++.. ..+++|||.-. ....|++++..
T Consensus 280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~------~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM------HGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE------ETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee------eeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 899999887543 456888999864 23 33333 22 2234441 14777777643 24588888876
Q ss_pred C
Q psy5806 1257 S 1257 (1332)
Q Consensus 1257 ~ 1257 (1332)
+
T Consensus 354 ~ 354 (751)
T 2xe4_A 354 Q 354 (751)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.45 E-value=20 Score=40.12 Aligned_cols=156 Identities=8% Similarity=-0.085 Sum_probs=90.7
Q ss_pred CCceeeEEEe-cCCeEEEEcCCCceEEEEeeCCceE-EEEec-CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDW-VANNIYYIDSQMHTINVARSDGQHK-KILVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw-~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
+.+..|++++ ..++++++-...+.|.++++..... ..... .......++++| .|.++.+-... +.|...+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~d------g~i~iwd 198 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPD------GILDVYN 198 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTT------SCEEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCC------CEEEEEE
Confidence 3567888886 1344445555677899999974433 32322 223578999999 55555553332 5677778
Q ss_pred cCCCceE-EEEec-CCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCce-EEEEe---eccc---ceEEEecCCcccc
Q psy5806 1166 LDGSYRT-VLVEE-DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSR-KIVIS---KVAP---YGLSVRQSPGKAF 1236 (1332)
Q Consensus 1166 ldG~~~~-~l~~~-~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~-~~~~~---~~~P---~glav~~~~~~~~ 1236 (1332)
+...... ..+.. .-.....|++.+++..|..+. .+.|...|+..... ..+.. ...+ ..+++ ++.
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 271 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI-----DDS 271 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE-----CTT
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccceEEEE-----CCC
Confidence 7655543 33332 235677899998888877776 34898888864432 11111 1112 23777 334
Q ss_pred ccEEEEEECCCCEEEEEEecCC
Q psy5806 1237 IVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1237 ~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+|.......+.|...+...+
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEecCCCCcEEEEEEccc
Confidence 5555554444677777766444
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.12 Score=44.44 Aligned_cols=39 Identities=28% Similarity=0.693 Sum_probs=29.8
Q ss_pred CCcccCCCCCCc--cccccCCCCcccc---------------------------CCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCS--HLCLRNPTNFTCA---------------------------CPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCs--hlCl~~p~~~~C~---------------------------Cp~g~~l~~d~~tC~ 1008 (1332)
.++|...+..|. +.|++++++|+|. |+.||+|. ++.+|+
T Consensus 3 idEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~~~~~~~~~~~C~~Gy~~~-~~~~C~ 70 (71)
T 2kl7_A 3 VNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPGYEPD-DQDSCV 70 (71)
T ss_dssp SCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCCSSCSCSSCCCSCTTEEEE-CCCCSC
T ss_pred cccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCccccccccCccccCCCCCeeeC-CCCccc
Confidence 467776666784 5799999999999 88888876 344675
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=2.3 Score=44.94 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=87.6
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC-----Ccee-EeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST-----RIKP-IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR 1117 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~-----~~~~-i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ 1117 (1332)
..+...|+|+| ++.||.+ ..+.|++++..+.. ...+ |-..+...=..+.+| ..++||.. ..+.|.+.+
T Consensus 40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEES
T ss_pred cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeC
Confidence 45677999999 7789999 77889999864311 1122 222233334678999 68999998 237786665
Q ss_pred e--CCce------EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CC------ceEEEEecCCCCc
Q psy5806 1118 S--DGQH------KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GS------YRTVLVEEDLAFP 1182 (1332)
Q Consensus 1118 l--dG~~------~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~------~~~~l~~~~l~~p 1182 (1332)
. ++.. .++-..+-..-..|+++| .|.||-.. +. +++|-..- +. ..+.+...+...=
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-dg-------~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-GQ-------QFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-TT-------EEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-CC-------cEEecCCCCCCCcccccccceeccCCcceE
Confidence 4 2321 222223445568999999 89999888 43 47664432 11 1222222221111
Q ss_pred ceEEEecCCCEEEEEEcCCCeEEEEecC
Q psy5806 1183 NELAIDFKQRRLFWADSTNKRIEYCDFF 1210 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d~~~~~I~~~d~d 1210 (1332)
.-|.++ .++.||++. +++|.+...+
T Consensus 185 r~l~f~-~~G~l~~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 185 KFLFFS-SVGTLFGVQ--GGKFYEDYPP 209 (236)
T ss_dssp EEEEEC-TTSCEEEEE--TTEEEEESCC
T ss_pred EEEEEC-CCCcEEEEe--CCeEEecCCc
Confidence 123444 456677776 6677776443
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=40.50 Aligned_cols=31 Identities=23% Similarity=0.772 Sum_probs=23.2
Q ss_pred ccCCCCcceeeec--cCCCceEEeCCCCceecCCCCCcCC
Q psy5806 394 SHCAPKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 394 n~C~~g~CshlCl--~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
+||.||+ .|+ +..++|+|.||.||+ |..|..
T Consensus 12 ~pC~ngg---~C~~~~~~~~~~C~C~~G~~----G~~Ce~ 44 (53)
T 1egf_A 12 GYCLNGG---VCMHIESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp CSSCSSC---EEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred CcCCCCc---EEEeeCCCCCEEEECCCCCc----CCcCCc
Confidence 4666533 566 678899999999996 668864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.96 E-value=41 Score=42.16 Aligned_cols=56 Identities=9% Similarity=-0.155 Sum_probs=31.8
Q ss_pred CeEEEEecC-CCceEEEEeecccc--eEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1202 KRIEYCDFF-GRSRKIVISKVAPY--GLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1202 ~~I~~~d~d-G~~~~~~~~~~~P~--glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+.|..+|+. |+.+-.+-...... .++. .++.||... ..+.|+.+|..+| +......
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-------agglvf~gt-~dg~l~a~D~~tG---~~lw~~~ 513 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLST-------AGNLVFEGS-ADGRVIAYAADTG---EKLWEQP 513 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-------TTTEEEEEC-TTSEEEEEETTTC---CEEEEEE
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceE-------CCCEEEEEC-CCCcEEEEECCCC---ccceeee
Confidence 568888885 33222211111111 3344 677777774 5788888888888 5544443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=89.94 E-value=30 Score=39.24 Aligned_cols=175 Identities=8% Similarity=-0.053 Sum_probs=99.1
Q ss_pred CceeeEEEecCCeEEEEcC-CCceEEEEeeCCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1090 IRDNFVIDWVANNIYYIDS-QMHTINVARSDGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~-~~~~I~v~~ldG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
.+..+|+.+.++.|.++.. ..+.|.++++.... ...+. ......+|+++|...+|..+. . ..+.+....
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~-------~~~~~~~~~ 205 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-G-------SSLEVISTV 205 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-S-------SCEEEEETT
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-c-------eeEEEEEec
Confidence 3567899988998887654 46789999997443 33353 335689999999655554443 2 235666554
Q ss_pred CCceEE-EEec-CCCCcceEEEecCCCEEEEEEcCCC---eEEEEecCCCceEEEE-----e-ecccceEEEecCCcccc
Q psy5806 1168 GSYRTV-LVEE-DLAFPNELAIDFKQRRLFWADSTNK---RIEYCDFFGRSRKIVI-----S-KVAPYGLSVRQSPGKAF 1236 (1332)
Q Consensus 1168 G~~~~~-l~~~-~l~~p~glaiD~~~~~LY~~d~~~~---~I~~~d~dG~~~~~~~-----~-~~~P~glav~~~~~~~~ 1236 (1332)
-..... .... .-.....+++.++++.|..+-.... .|...+........+. . .....+|++ +++
T Consensus 206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-----Spd 280 (365)
T 4h5i_A 206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDV-----DMK 280 (365)
T ss_dssp TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEE-----CTT
T ss_pred cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEE-----CCC
Confidence 333222 2111 1123457888888777776644322 3555555443322221 1 334567788 334
Q ss_pred ccEEEEEECCCCEEEEEEecCCCCcceEEEEecC-CCCeeeEEEEeCC
Q psy5806 1237 IVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN-QEDFLNIKAISAS 1283 (1332)
Q Consensus 1237 ~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~~~~~ 1283 (1332)
+.+|. +-...+.|...|..++ +....+..+ ...+..| +|++.
T Consensus 281 g~~la-sgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v-~fSpd 323 (365)
T 4h5i_A 281 GELAV-LASNDNSIALVKLKDL---SMSKIFKQAHSFAITEV-TISPD 323 (365)
T ss_dssp SCEEE-EEETTSCEEEEETTTT---EEEEEETTSSSSCEEEE-EECTT
T ss_pred CCceE-EEcCCCEEEEEECCCC---cEEEEecCcccCCEEEE-EECCC
Confidence 44444 4456788999998887 554444332 2333333 45543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.87 E-value=28 Score=38.74 Aligned_cols=195 Identities=9% Similarity=-0.057 Sum_probs=103.3
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-Eeec--CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc--
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-IPLM--NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-- 1121 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~--~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-- 1121 (1332)
+.++++++. +..+-...+.|+..++..+..... .+.. .......|++.+.++.|. +-...+.|.++++...
T Consensus 17 v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 17 IWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp EEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEETTSCEEEEEC-----
T ss_pred eeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEeCCCcEEEEEcccCcC
Confidence 567888765 444545778898888764322211 1211 233567899987666554 4445678999988531
Q ss_pred ------eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC--CCceEE--EEecCCCCcceEEEecCC
Q psy5806 1122 ------HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD--GSYRTV--LVEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1122 ------~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld--G~~~~~--l~~~~l~~p~glaiD~~~ 1191 (1332)
....+..-......|+++|...+| .+-... ..|..-+++ +..... .+...-.....+++.+++
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-as~s~D------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYL-ATCSRD------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEE-EEEETT------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEE-EEEeCC------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 122233333567899999954444 443332 456666663 222121 222223456678888876
Q ss_pred CEEEEEEcCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.|.-+ ...+.|...+......+.+.. .....++++ +++ .++.+..+-...+.|...+..+
T Consensus 166 ~~l~s~-s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~--~~~--~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 166 ALLASS-SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF--DKT--EGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SEEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE--CCS--SSSCEEEEEETTSCEEEEEEEE
T ss_pred CEEEEE-cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe--cCC--CCeeEEEEEeCCCeEEEEEecC
Confidence 655544 456777777665432222221 334456666 111 0133444555666776666543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=89.85 E-value=7.3 Score=45.97 Aligned_cols=160 Identities=8% Similarity=-0.020 Sum_probs=96.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCC-------CCCceeEe-------ecCCCCceeeEEEecCCeEEE---EcCCC
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSD-------STRIKPIP-------LMNDTIRDNFVIDWVANNIYY---IDSQM 1110 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~-------g~~~~~i~-------~~~~~~p~glAvDw~~~~LY~---td~~~ 1110 (1332)
..|++.+..+.|+.+.... |..+...+ +.....+. ......+..|+++..++.|++ +....
T Consensus 40 n~lavs~~~~~l~~~~~dg--v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG--LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp BCEEEETTTTEEEEEETTE--EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred cEEEEecCCCEEEEECCCE--EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 4566788888888876432 44433110 00000111 011235788999988888887 66667
Q ss_pred ceEEEEeeCCc------eE-----EE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC
Q psy5806 1111 HTINVARSDGQ------HK-----KI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED 1178 (1332)
Q Consensus 1111 ~~I~v~~ldG~------~~-----~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~ 1178 (1332)
+.|.++++... .. .. +..-...+.+|+.+|..+.++.+-... +.|...++............
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D------g~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD------GSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT------SCEEEEEESSSEEEEEEECG
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC------CeEEEEEcCCCcceeeccCC
Confidence 88999998632 11 11 211134689999999767777765443 45777777654322212211
Q ss_pred CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEE
Q psy5806 1179 LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKI 1216 (1332)
Q Consensus 1179 l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~ 1216 (1332)
-..+..+++.++++.|+.+. ..+.|...|..|.....
T Consensus 192 ~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~ 228 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKV 228 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEE
T ss_pred CCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCccccc
Confidence 24578899999988888775 66789999988654433
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=89.55 E-value=0.28 Score=37.83 Aligned_cols=30 Identities=20% Similarity=0.669 Sum_probs=22.4
Q ss_pred ccCCCCcceeeec--cCCCceEEeCCCCceecCCCCCcC
Q psy5806 394 SHCAPKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 394 n~C~~g~CshlCl--~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+||.|++ .|+ +..++|+|.|+.||+ |+.|.
T Consensus 9 ~pC~ngg---~C~~~~~~~~~~C~C~~G~~----G~~Ce 40 (45)
T 1a3p_A 9 GYCLNGG---VXMHIESLDSYTCNCVIGYS----GDRCQ 40 (45)
T ss_dssp SCCSSSC---EEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred CCCCCCC---EEEeecCCCCEEEEcCCCCc----CCcCC
Confidence 4777643 454 567799999999997 66784
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=89.53 E-value=27 Score=38.11 Aligned_cols=203 Identities=7% Similarity=-0.005 Sum_probs=114.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce-eEeecCCCCceeeEEEec-CCeEEEEcCCCceEEEEeeCCce-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK-PIPLMNDTIRDNFVIDWV-ANNIYYIDSQMHTINVARSDGQH- 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~-~i~~~~~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ldG~~- 1122 (1332)
.+..++|++.+++|.-.. ..+.|+..++.+++... ..+....+....+++... .+++.++-...+.|.+.++....
T Consensus 11 ~V~~~~~s~~g~~las~s-~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred ceEEEEECCCCCEEEEEe-CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 357889999887766554 67888888876332221 122122334566776532 25555666667899999997431
Q ss_pred --EEEEecCCCCceEEEEcCCC-cEEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcceEEEecCC------
Q psy5806 1123 --KKILVNDLMEPLAIAVYPRR-GLLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPNELAIDFKQ------ 1191 (1332)
Q Consensus 1123 --~~~~~~~~~~P~~iavdp~~-g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~glaiD~~~------ 1191 (1332)
...+..-......++++|.. |.++.+-... +.|...++.... ....+.......+.+++.+..
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 22232233467889999952 5444444332 456666665432 122232222344566666542
Q ss_pred ------CEEEEEEcCCCeEEEEecCCCc-eEEEE-e----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1192 ------RRLFWADSTNKRIEYCDFFGRS-RKIVI-S----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1192 ------~~LY~~d~~~~~I~~~d~dG~~-~~~~~-~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++++.+-...+.|...|+.... ...+. . .....+|++ +++.. .+.+..+-...++|...+..++
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~--sp~~~-~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW--SPTVL-LRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE--CCCCS-SSEEEEEEETTSCEEEEEESST
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE--CCCCC-CceEEEEEECCCcEEEEEeCCC
Confidence 3455555667788888876433 11121 1 334567777 22110 1355556667788888887654
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.23 Score=40.21 Aligned_cols=34 Identities=29% Similarity=0.778 Sum_probs=22.6
Q ss_pred cccCCCC-cceeee-ccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPK-VCSHIC-LPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g-~CshlC-l~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+||.|| .|..+= +...++|+|.||.||+ |+.|+
T Consensus 13 s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~----G~~CE 48 (55)
T 3u7u_G 13 KTFCVNGGECFMVKDLSNPSRYLCKCPNEFT----GDRCQ 48 (55)
T ss_dssp TTTSCTTCEEEEECCC--CCCEEEEECTTEE----STTSC
T ss_pred CCCCCCCCCcCCCCccCCCCCEeEeCCCCCc----CCCcC
Confidence 4667753 454331 4566799999999997 67885
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=89.51 E-value=27 Score=38.10 Aligned_cols=191 Identities=8% Similarity=-0.030 Sum_probs=102.4
Q ss_pred eEEEEeecceEEEEeCCCCCCCCcccccCCc-cceEEEEEeCC-CcEEEEEeCCCCeEEEEECCCCCCceeE-eecCCCC
Q psy5806 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEY-MSSIFFDYHYS-KNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMNDTI 1090 (1332)
Q Consensus 1014 ~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~-~~~~~id~d~~-~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~~~ 1090 (1332)
+|+....+..|+..++..... ..+..+.+. ..+.+++|.+. .+.++.+-...++|+..++.++...... .......
T Consensus 23 ~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~ 101 (297)
T 2pm7_B 23 RMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS 101 (297)
T ss_dssp EEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC
T ss_pred EEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc
Confidence 444444333266656543211 111222222 34568999753 3445555557889998888754322222 2122335
Q ss_pred ceeeEEEecC-CeEEEEcCCCceEEEEeeCCce---EEEEecCCCCceEEEEcCCC------------cEEEEEecCCCC
Q psy5806 1091 RDNFVIDWVA-NNIYYIDSQMHTINVARSDGQH---KKILVNDLMEPLAIAVYPRR------------GLLFYSHWGLYD 1154 (1332)
Q Consensus 1091 p~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~---~~~~~~~~~~P~~iavdp~~------------g~Lywtd~~~~~ 1154 (1332)
...+++.+.. +.+.++-...+.|.+.++.... ...+..-......++++|.. +.++.+-...
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-- 179 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-- 179 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT--
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC--
Confidence 6778887652 3444555556789999986431 22233333456788888852 3455554333
Q ss_pred CCCCCcEEEEecCCCc-eEE---EEecCCCCcceEEEecCC--CEEEEEEcCCCeEEEEecCC
Q psy5806 1155 NSPTTKIEKVYLDGSY-RTV---LVEEDLAFPNELAIDFKQ--RRLFWADSTNKRIEYCDFFG 1211 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG~~-~~~---l~~~~l~~p~glaiD~~~--~~LY~~d~~~~~I~~~d~dG 1211 (1332)
..|..-++.... ... .+...-.....+++.++. +.+..+-+..+.|...|++.
T Consensus 180 ----~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 180 ----NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ----CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 344444444322 111 122222446788888764 46666666777888888764
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.03 E-value=5.4 Score=48.86 Aligned_cols=114 Identities=16% Similarity=0.091 Sum_probs=70.6
Q ss_pred CCCceeeEEEecCCeEEEEcCCC---------------------ceEEEEeeCCce------E-EE-Ee-----------
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQM---------------------HTINVARSDGQH------K-KI-LV----------- 1127 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~~---------------------~~I~v~~ldG~~------~-~~-~~----------- 1127 (1332)
...|+|+++++..+.||++-.++ +.|..++.++.. . .+ +.
T Consensus 383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~ 462 (592)
T 3zwu_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence 45899999999999999985532 456666654321 0 11 11
Q ss_pred ----------cCCCCceEEEEcCCCcEEEEEecCCCCC------CCCCcEEEEecC-CCceEEEEecCCCCcceEEEecC
Q psy5806 1128 ----------NDLMEPLAIAVYPRRGLLFYSHWGLYDN------SPTTKIEKVYLD-GSYRTVLVEEDLAFPNELAIDFK 1190 (1332)
Q Consensus 1128 ----------~~~~~P~~iavdp~~g~Lywtd~~~~~~------~~~~~I~r~~ld-G~~~~~l~~~~l~~p~glaiD~~ 1190 (1332)
..+..|-.|++|| .|.||+.+.+...+ .....+...... |..+..+....-....|+++.++
T Consensus 463 ~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD 541 (592)
T 3zwu_A 463 KGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT
T ss_pred cccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC
Confidence 1367899999999 68888887554110 112345555544 33333232222245678999999
Q ss_pred CCEEEEEEcCCC
Q psy5806 1191 QRRLFWADSTNK 1202 (1332)
Q Consensus 1191 ~~~LY~~d~~~~ 1202 (1332)
++.||+.-++-+
T Consensus 542 g~tlfvniQHPG 553 (592)
T 3zwu_A 542 QKTLFVGIQHPG 553 (592)
T ss_dssp SSEEEEEEESTT
T ss_pred CCEEEEEEECCC
Confidence 899998766543
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=88.70 E-value=0.12 Score=42.76 Aligned_cols=25 Identities=16% Similarity=0.562 Sum_probs=19.8
Q ss_pred eeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 404 ICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 404 lCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|++..++|+|.||.||.+ |..|..
T Consensus 26 tC~~~~g~y~C~C~~Gy~~---G~~C~~ 50 (61)
T 2k2s_B 26 TCKETNSGYICRCNQGYRI---SLDGTG 50 (61)
T ss_dssp EEEECSSEEEEECCTTEEE---EECSSS
T ss_pred ccccCCCceEeECCCCCcc---CCCCCC
Confidence 5788899999999999983 345643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=88.33 E-value=13 Score=41.21 Aligned_cols=203 Identities=10% Similarity=-0.063 Sum_probs=108.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-EeecCCCCceeeEEEec-CCeEEEEcCCCceEEEEeeCCc-e
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-IPLMNDTIRDNFVIDWV-ANNIYYIDSQMHTINVARSDGQ-H 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~~~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ldG~-~ 1122 (1332)
.+..++|++.+++|.-.. ..+.|+..++.++..... .+....+....+++... .+++.++-...+.|.++++... .
T Consensus 15 ~V~~v~~s~~g~~lasgs-~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCS-SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CEEEEEECGGGCEEEEEE-TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred eEEEeeEcCCCCEEEEEe-CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 357889998877665544 778888888764322111 12222345667777532 2444456556778999998743 2
Q ss_pred E--EEEecCCCCceEEEEcCCC-cEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec---CCCCcceEEEecCC-----
Q psy5806 1123 K--KILVNDLMEPLAIAVYPRR-GLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE---DLAFPNELAIDFKQ----- 1191 (1332)
Q Consensus 1123 ~--~~~~~~~~~P~~iavdp~~-g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~---~l~~p~glaiD~~~----- 1191 (1332)
. ..+..-......|+++|.. |.++.+-... +.|..-++.+.....+... .....+.+++.++.
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 2 2233333467899999963 5555554333 4455555554322111110 11122344444431
Q ss_pred -----------CEEEEEEcCCCeEEEEecCCCc-eEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1192 -----------RRLFWADSTNKRIEYCDFFGRS-RKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1192 -----------~~LY~~d~~~~~I~~~d~dG~~-~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
++++.+-...+.|...|+.+.. .+.+.. .....++++ +++...++.+..+-...++|...+.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~--sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW--APSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEEC--CCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEe--cCCCCCCCceEEEEcCCCeEEEEEc
Confidence 2344444456667666665332 122222 233456666 3322222345566667788888887
Q ss_pred cC
Q psy5806 1256 KS 1257 (1332)
Q Consensus 1256 ~~ 1257 (1332)
.+
T Consensus 246 ~~ 247 (316)
T 3bg1_A 246 DD 247 (316)
T ss_dssp SS
T ss_pred cC
Confidence 65
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.03 E-value=38 Score=37.90 Aligned_cols=200 Identities=12% Similarity=0.002 Sum_probs=113.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE--eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI--PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH- 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i--~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~- 1122 (1332)
.+.+++|++.++.|.-.. ..+.|+..++..+...+.+ ..........+++.+.++.|..+ ...+.|.++++....
T Consensus 107 ~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 107 EVKSVAWAPSGNLLATCS-RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA-SYDDTVKLYREEEDDW 184 (345)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE-ETTSCEEEEEEETTEE
T ss_pred CceEEEEeCCCCEEEEEE-CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE-eCCCcEEEEEecCCCE
Confidence 467899999887666554 6788888887744333222 22223456788888766666544 455688889887543
Q ss_pred E--EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE-----------EE--Eec-CCCCcceEE
Q psy5806 1123 K--KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT-----------VL--VEE-DLAFPNELA 1186 (1332)
Q Consensus 1123 ~--~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~-----------~l--~~~-~l~~p~gla 1186 (1332)
. ..+..-.....+|+++|...+|....... .=+|++....+.... .+ +.. .-.....++
T Consensus 185 ~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-----~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDR-----TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEeCCC-----eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 2 22433345678999999655554443322 345666554433211 11 110 112345677
Q ss_pred EecCCCEEEEEEcCCCeEEEEecCCCc------eEEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1187 IDFKQRRLFWADSTNKRIEYCDFFGRS------RKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~~~~I~~~d~dG~~------~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
+.+.++.|.-+ ...+.|...+.+... ...... .....+|+. .+.+..+..+-...++|..-+.
T Consensus 260 ~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 260 WCQLTGALATA-CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW-----NPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp ECTTTCCEEEE-ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE-----CSSSTTEEEEEETTSCEEEEEE
T ss_pred EecCCCEEEEE-eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE-----eCCCceEEEEcCCCCcEEEEEe
Confidence 77776666544 456677777775431 111111 233456666 1223345666667778877776
Q ss_pred cCC
Q psy5806 1256 KSD 1258 (1332)
Q Consensus 1256 ~~g 1258 (1332)
.++
T Consensus 334 ~~~ 336 (345)
T 3fm0_A 334 QRP 336 (345)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.31 Score=39.16 Aligned_cols=32 Identities=22% Similarity=0.746 Sum_probs=23.3
Q ss_pred cccCCCC-cceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPK-VCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g-~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+||.|| .|.. +...++|+|.||.||+ |..|+
T Consensus 11 ~~pC~nGG~C~~--~~~~~~~~C~C~~Gyt----G~~Ce 43 (53)
T 1nql_B 11 DGYCLHDGVCMY--IEALDKYACNCVVGYI----GERCQ 43 (53)
T ss_dssp CCEECTTCEEEE--ETTTTEEEEEECTTEE----STTSC
T ss_pred CCCCCCCeEEee--ecCCCCEEEecCCCCc----CCCCC
Confidence 5788864 4532 1556799999999997 66785
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=24 Score=37.35 Aligned_cols=147 Identities=9% Similarity=-0.044 Sum_probs=86.3
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-------ceEEEEe-cCCCCceEEEEcCCCcEEEEEecCCCCCCCC
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-------QHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPT 1158 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-------~~~~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~ 1158 (1332)
+..+...||+++ ++.||.. ..+.+...+... ...+.|- .+...=.+|.+|| +|.||....
T Consensus 39 gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~d-------- 106 (236)
T 1tl2_A 39 GWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVSK-------- 106 (236)
T ss_dssp SCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEET--------
T ss_pred ccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeCC--------
Confidence 456788999998 8889998 445676665521 1112231 2333357899998 899999932
Q ss_pred CcEEEEec--CCCce-----EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEe-cCCC------ceEEEEe-eccc
Q psy5806 1159 TKIEKVYL--DGSYR-----TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCD-FFGR------SRKIVIS-KVAP 1223 (1332)
Q Consensus 1159 ~~I~r~~l--dG~~~-----~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d-~dG~------~~~~~~~-~~~P 1223 (1332)
++|+|.+. ++... +.+...+...-.-|.+|++ +.||-+. .+++.+-. +.+. ....+.. ..+-
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~-G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN-GYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT-SCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC-ceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 47999987 44331 2333323333456788854 6788766 55665432 2222 1233332 2222
Q ss_pred ce-EEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1224 YG-LSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1224 ~g-lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+- |.. +.++.||+.. .+.+++....
T Consensus 184 yr~l~f------~~~G~l~~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 184 FKFLFF------SSVGTLFGVQ--GGKFYEDYPP 209 (236)
T ss_dssp EEEEEE------CTTSCEEEEE--TTEEEEESCC
T ss_pred EEEEEE------CCCCcEEEEe--CCeEEecCCc
Confidence 22 223 3677888888 7788887544
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.58 E-value=17 Score=41.96 Aligned_cols=210 Identities=10% Similarity=0.036 Sum_probs=110.4
Q ss_pred eEEEEEeCC--CcEEEEEeCCCCeEEEEECCCCCCceeEeecC-------------------CCCceeeEEEec-CCeEE
Q psy5806 1047 SIFFDYHYS--KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-------------------DTIRDNFVIDWV-ANNIY 1104 (1332)
Q Consensus 1047 ~~~id~d~~--~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-------------------~~~p~glAvDw~-~~~LY 1104 (1332)
+.+|++++. .+.||... ..+.|++.+ + +...-..+... ......|++|+. .+.||
T Consensus 117 i~~l~~~~~~~~~~l~~g~-~~ggl~~S~-D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 117 VFWLTPGHASEPGTWYAGT-SPQGLFRST-D-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp EEEEEECCTTSTTCEEEEE-ETTEEEEES-S-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred eeEEEeCCCCCCCEEEEEe-cCCcEEEEc-C-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 456777763 46677654 345577654 3 33332222110 112357888864 46788
Q ss_pred EEcCCCceEEEEeeCCceEEEEecCC-------------CCceEEEEcCCC-cEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1105 YIDSQMHTINVARSDGQHKKILVNDL-------------MEPLAIAVYPRR-GLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1105 ~td~~~~~I~v~~ldG~~~~~~~~~~-------------~~P~~iavdp~~-g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
+.... +.|.+.+-.|+.=+.+..++ ..+..|+++|.+ +.||....+ .|+|..-.|..
T Consensus 194 vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~--------gl~~s~D~G~t 264 (394)
T 3b7f_A 194 IGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC--------GIYRMDRREGV 264 (394)
T ss_dssp EEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT--------EEEEEETTTTE
T ss_pred EEECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC--------eEEEeCCCCCc
Confidence 87543 34544443454433322111 236789999964 678776533 38888755544
Q ss_pred eEEEEecCCCC-----cceEEEec-CCCEEEEEEc------------CCCeEEEEecCCCceEEEEe-ecc--------c
Q psy5806 1171 RTVLVEEDLAF-----PNELAIDF-KQRRLFWADS------------TNKRIEYCDFFGRSRKIVIS-KVA--------P 1223 (1332)
Q Consensus 1171 ~~~l~~~~l~~-----p~glaiD~-~~~~LY~~d~------------~~~~I~~~d~dG~~~~~~~~-~~~--------P 1223 (1332)
-+.+ ...+.. ...|++|+ +.+.||++-. ....|.+..-.|..-+.+.. +.. .
T Consensus 265 W~~~-~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~ 343 (394)
T 3b7f_A 265 WKRI-GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKR 343 (394)
T ss_dssp EECG-GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCT
T ss_pred ceEC-CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEE
Confidence 3332 222322 23577776 4567887631 12356654333555554433 221 1
Q ss_pred ceEEEecCCcccc-ccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEE
Q psy5806 1224 YGLSVRQSPGKAF-IVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKA 1279 (1332)
Q Consensus 1224 ~glav~~~~~~~~-~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 1279 (1332)
.+|++ ++. .+.||+.. ..+.|++-. ..| ..-+.+..+++....|.+
T Consensus 344 ~~~~~-----~p~~~~~l~~g~-~~g~l~~S~-D~G---~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 344 QAMTA-----DAHAPVGVYFGT-TGGEIWASA-DEG---EHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp BSEEE-----CCSSSCCEEEEC-TTSCEEEES-STT---SBCEEEECSCSCEEEEEE
T ss_pred EEEEE-----CCCCCCEEEEEe-CCCeEEEEC-CCC---CCceEcccCCCCeeEEEE
Confidence 35777 222 35588763 345676654 344 455666777776665543
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.14 E-value=0.29 Score=55.55 Aligned_cols=42 Identities=33% Similarity=0.936 Sum_probs=36.9
Q ss_pred CCcccCC-CCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 969 PNACGSN-NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 969 ~n~C~~~-nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
.++|... ++.|.|.|.+++++|+|.|+.||.+..++++|.+.
T Consensus 43 ~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~ 85 (317)
T 3h5c_B 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPH 85 (317)
T ss_dssp SSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEEC
T ss_pred cccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccc
Confidence 6788763 47999999999999999999999998899999863
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.06 E-value=58 Score=39.58 Aligned_cols=157 Identities=8% Similarity=-0.018 Sum_probs=99.7
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC----CCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND----TIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~----~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
...+.+++|+|.+.+|-.+. .++.++..+.+ .......... .....+|+.+.++.|+.+.. .+.|.++++.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~---~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDN---KMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-DGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEE-TTSCEEEEETT---EEEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-TSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC---ceeeeccCCCccccccEEEEEEcCCCCEEEEEcC-CCEEEEEECC
Confidence 44578999999998887766 67778777733 1111111111 13678999999999988764 5689999998
Q ss_pred Cce--------EEEEecC----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE----EEEecCCCCcc
Q psy5806 1120 GQH--------KKILVND----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT----VLVEEDLAFPN 1183 (1332)
Q Consensus 1120 G~~--------~~~~~~~----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~----~l~~~~l~~p~ 1183 (1332)
+.. ...+... ......|+..| +| | .+-... ..|..-++++.... .+-...-....
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg-L-aass~D------~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV-L-VAALSN------NSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE-E-EEEETT------CCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcC-Cc-E-EEEeCC------CeEEEEECCCCccccceeeecccccCcEE
Confidence 653 2234222 24789999999 56 3 343333 56777788886632 23211123466
Q ss_pred eEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE
Q psy5806 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~ 1218 (1332)
.+++. ++.|--+ ..++|...|..+.....+.
T Consensus 231 svaFs--g~~LASa--~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 231 DLKIV--DYKVVLT--CPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp CEEEE--TTEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred EEEEE--CCEEEEE--eCCeEEEEECCCCeEEEEE
Confidence 77776 4555544 3578999998876654443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=86.93 E-value=45 Score=37.54 Aligned_cols=192 Identities=6% Similarity=-0.004 Sum_probs=106.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+..++|++.++.|.... .+.+...+++.+ +.+..........+++.+.++.+.++....+.|.++++. |+...
T Consensus 21 ~V~~v~fs~dg~~la~g~--~~~~~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~ 95 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILST--LKSFEIYNVHPV---AHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS 95 (355)
T ss_dssp CCCEEEECTTSSEEEEEC--SSEEEEEEETTE---EEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCCEEEEEc--CCEEEEEecCCc---ceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE
Confidence 356889999887666553 234555564422 222222222345567776677777776666799999986 44444
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceE-EEecCCCEEEEE-EcCC
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNEL-AIDFKQRRLFWA-DSTN 1201 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~gl-aiD~~~~~LY~~-d~~~ 1201 (1332)
.+. ......++++++. .++.+.. .+|...++... .....+.. |.++ ++.+ +.|-++ -...
T Consensus 96 ~~~-~~~~v~~v~~~~~--~~~~~~~--------~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 96 RIK-VDAPVKDLFLSRE--FIVVSYG--------DVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp EEE-CSSCEEEEEECSS--EEEEEET--------TEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCT
T ss_pred EEE-CCCceEEEEEcCC--EEEEEEc--------CEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcC
Confidence 343 3346788888874 4444432 34666666554 21111111 3333 3433 455554 4566
Q ss_pred CeEEEEecCCCc-----------------eEEEEe-ecccceEEEecCCccccccEEEEEECCCCE-EEEEEecCCCCcc
Q psy5806 1202 KRIEYCDFFGRS-----------------RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMS-VVIAREKSDTGQW 1262 (1332)
Q Consensus 1202 ~~I~~~d~dG~~-----------------~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~-V~~~~~~~g~~~~ 1262 (1332)
+.|...|+.... ...+.. .....+|++ .+ ++.+..+-...++ |...+..++ .
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~-----s~-~g~~l~s~s~d~~~v~iwd~~~~---~ 229 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL-----NR-KSDMVATCSQDGTIIRVFKTEDG---V 229 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEE-----CT-TSSEEEEEETTCSEEEEEETTTC---C
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE-----CC-CCCEEEEEeCCCCEEEEEECCCC---c
Confidence 778887876432 222222 455667777 22 3444455556676 888887777 5
Q ss_pred eEEEEe
Q psy5806 1263 DVHLIR 1268 (1332)
Q Consensus 1263 ~~~~~~ 1268 (1332)
....+.
T Consensus 230 ~~~~~~ 235 (355)
T 3vu4_A 230 LVREFR 235 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555555
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=86.74 E-value=0.44 Score=39.73 Aligned_cols=34 Identities=26% Similarity=0.707 Sum_probs=24.0
Q ss_pred cccCCCC-cceeeec-cCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPK-VCSHICL-PNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g-~CshlCl-~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+||.|| .|..+.- +..++|+|.|+.||+ |..|.
T Consensus 11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce 46 (63)
T 1hae_A 11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCT 46 (63)
T ss_dssp HTTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSC
T ss_pred CCcCCCCcEEecCCccCCCCCEEEECCCCCc----CCccC
Confidence 5778864 4544331 356799999999997 67885
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=86.59 E-value=0.33 Score=37.72 Aligned_cols=33 Identities=21% Similarity=0.572 Sum_probs=22.5
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.+||.||.|..+ ...++|+|.|+.||+ |..|+.
T Consensus 11 ~~pC~nG~C~~~--~~~~~~~C~C~~Gyt----G~~Ce~ 43 (46)
T 1k36_A 11 NGYCLHGQCIYL--VDMSQNYCRCEVGYT----GVRCEH 43 (46)
T ss_dssp CSSCSSEEEEEE--TTTTEEEEEECTTCS----STTSCC
T ss_pred CCCCCCCEeecc--CCCCCEEEECCCCCc----cCCCCc
Confidence 367777555432 233689999999997 667853
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=73 Score=39.06 Aligned_cols=74 Identities=8% Similarity=-0.039 Sum_probs=46.7
Q ss_pred ceEEEecCCCEEEEEEc--------------------------------------CCCeEEEEecC-CCceEEEEeeccc
Q psy5806 1183 NELAIDFKQRRLFWADS--------------------------------------TNKRIEYCDFF-GRSRKIVISKVAP 1223 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d~--------------------------------------~~~~I~~~d~d-G~~~~~~~~~~~P 1223 (1332)
.++++|+++++||+... ..+.|..+|+. |+.+-.. ....|
T Consensus 396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~-~~~~~ 474 (599)
T 1w6s_A 396 GHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEK-MERFA 474 (599)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEE-EESSC
T ss_pred CCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEe-cCCCC
Confidence 47899999999998531 22466666764 3322111 11111
Q ss_pred --ce-EEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1224 --YG-LSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1224 --~g-lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
-| |+. .++.||+.. ..+.|+.+|..+| +.+-..+
T Consensus 475 ~~~g~~~t-------agg~vf~gt-~dg~l~A~D~~tG---~~lW~~~ 511 (599)
T 1w6s_A 475 VWGGTMAT-------AGDLVFYGT-LDGYLKARDSDTG---DLLWKFK 511 (599)
T ss_dssp CCSBCEEE-------TTTEEEEEC-TTSEEEEEETTTC---CEEEEEE
T ss_pred ccCcceEe-------cCCEEEEEC-CCCeEEEEECCCC---CEEEEee
Confidence 13 666 788899875 5689999999998 5554443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.24 E-value=45 Score=36.04 Aligned_cols=244 Identities=10% Similarity=0.034 Sum_probs=126.1
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
...|.++..+. |+.-++.+...... +...+ ...+.+++|++.++.|.... ..+.|...++.++.....+. ...
T Consensus 36 ~~~lAvg~D~t-V~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs-~Dg~v~iw~~~~~~~~~~~~---~h~ 109 (318)
T 4ggc_A 36 GNVLAVALDNS-VYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQQKRLRNMT---SHS 109 (318)
T ss_dssp TSEEEEEETTE-EEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE---CCS
T ss_pred CCEEEEEeCCE-EEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEE-CCCcEEEeecCCceeEEEec---Ccc
Confidence 34455555555 66666654332211 11222 23467999999988766554 77889988877543332222 222
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceE--EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHK--KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~--~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
..-.++.+.+..|... ...+.+.......... ..+.........++..+...+|+.+.. . +.|..-++..
T Consensus 110 ~~~~~~~~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d------~~i~iwd~~~ 181 (318)
T 4ggc_A 110 ARVGSLSWNSYILSSG-SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN-D------NLVNVWPSAP 181 (318)
T ss_dssp SCEEEEEEETTEEEEE-ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-T------SCEEEEESSC
T ss_pred ceEEEeecCCCEEEEE-ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec-C------cceeEEECCC
Confidence 3334455546655444 3445666666553322 224444456777888885555544332 2 3455555532
Q ss_pred Cc-e---EEEEecCCCCcceEEEecCCCEEEEE-E-cCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEE
Q psy5806 1169 SY-R---TVLVEEDLAFPNELAIDFKQRRLFWA-D-STNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELY 1241 (1332)
Q Consensus 1169 ~~-~---~~l~~~~l~~p~glaiD~~~~~LY~~-d-~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lY 1241 (1332)
.. . .............++..+.+..+... . ...+.|...+........... ......+.. ...++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~ 256 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW-----SPHYKELI 256 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE-----ETTTTEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee-----cccccceE
Confidence 22 1 11111112234456666555554433 2 234567666665544333333 333444444 23455666
Q ss_pred EEE-CCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1242 WTD-WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1242 wtd-~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
.+- ...+.|...+..++ +.+..+......+..|
T Consensus 257 ~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l 290 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSL 290 (318)
T ss_dssp EEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred EEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEE
Confidence 554 36688888888777 5555555444444444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=84.45 E-value=52 Score=41.01 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=56.4
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecC----------CCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN----------DTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~----------~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
+++||+.. ..+.|+.+++.+|......-... .....+++++ ++.||+... .+.|..++.. |+.+=
T Consensus 66 ~g~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL-DGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred CCEEEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEEEcC-CCEEEEEECCCCCEee
Confidence 46777765 34567777766554433221100 0013567887 889999864 4678888874 77543
Q ss_pred EEecC-----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCce
Q psy5806 1125 ILVND-----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYR 1171 (1332)
Q Consensus 1125 ~~~~~-----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~ 1171 (1332)
..... ......-+|. .+.+|+...+.. ....+.|+..+. +|+.+
T Consensus 142 ~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 142 SQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAE-YGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp EEECSCTTSSCBCCSCCEEE--TTEEEECCBCTT-TCCBCEEEEEETTTCCEE
T ss_pred eeccCCCCCcceecCCCEEE--CCEEEEeCCCCC-cCCCCEEEEEECCCCcEE
Confidence 32111 0000111222 568887754320 011356777776 45443
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=83.86 E-value=0.32 Score=48.06 Aligned_cols=40 Identities=18% Similarity=0.516 Sum_probs=31.0
Q ss_pred CcccCCCCCCc--cccccCCCCccccCCCCeeEccCCccccc
Q psy5806 970 NACGSNNGGCS--HLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 970 n~C~~~nGgCs--hlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
++|...++.|. +.|+.++++|+|.|+.||.+..++++|.+
T Consensus 97 deC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~ 138 (143)
T 2bou_A 97 DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQK 138 (143)
T ss_dssp CHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBT
T ss_pred cCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCcc
Confidence 44544334554 68999999999999999999888888875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.27 E-value=36 Score=41.41 Aligned_cols=183 Identities=6% Similarity=-0.079 Sum_probs=110.9
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
...+..++|.|.+ .+..+++.++....++.......+.++|..+.+..|=.+. ..+.|.+++.++ ..
T Consensus 52 ~~~v~~V~FsPdg-----------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~-~l 118 (588)
T 2j04_A 52 SKNLFHVKEFPLE-----------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK-ML 118 (588)
T ss_dssp GGGTEEEEEECCC-----------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEE-TTSCEEEEETTE-EE
T ss_pred CccEEEEEECCCC-----------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCc-ee
Confidence 3457788888876 2222333433333333212245678888888777775544 456788888655 11
Q ss_pred EEEecCC----CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce-------EEEEecC----CCCcceEEEe
Q psy5806 1124 KILVNDL----MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR-------TVLVEED----LAFPNELAID 1188 (1332)
Q Consensus 1124 ~~~~~~~----~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-------~~l~~~~----l~~p~glaiD 1188 (1332)
..+.... ....++|++|...+|+.+... +.|..-++.+... ...+... ..+...+++.
T Consensus 119 ~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D-------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 119 TNLDSKGNLSSRTYHCFEWNPIESSIVVGNED-------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp EECCCSSCSTTTCEEEEEECSSSSCEEEEETT-------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred eeccCCCccccccEEEEEEcCCCCEEEEEcCC-------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 1122110 137889999988888887654 3566667766532 1222111 2467778888
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCCce----EEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGRSR----KIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~~~----~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+++ +.+-+..+.|...++++... +.+.+ .....+++. .++.|-.+- .++|...+..++
T Consensus 192 Pdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF-------sg~~LASa~--~~tIkLWd~~~~ 255 (588)
T 2j04_A 192 EDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI-------VDYKVVLTC--PGYVHKIDLKNY 255 (588)
T ss_dssp TTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE-------ETTEEEEEC--SSEEEEEETTTT
T ss_pred CCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE-------ECCEEEEEe--CCeEEEEECCCC
Confidence 765 45666778899999987653 22322 345778888 455666553 488998887766
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=82.06 E-value=0.37 Score=50.00 Aligned_cols=38 Identities=24% Similarity=0.651 Sum_probs=30.9
Q ss_pred ccCC-CCcceeeeccCCCceEEeCCCCceecC-CCCCcCC
Q psy5806 394 SHCA-PKVCSHICLPNKHRFTCQCPLGLTLSP-DNKSCSE 431 (1332)
Q Consensus 394 n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~~-d~~tC~~ 431 (1332)
++|. ++.|.|.|++..++|+|.|+.||++.+ |++.|+.
T Consensus 97 ~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~ 136 (186)
T 1z1y_A 97 XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTX 136 (186)
T ss_dssp CCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEE
T ss_pred CCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceE
Confidence 4566 567888888999999999999999866 7788854
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=81.30 E-value=1.2e+02 Score=38.06 Aligned_cols=219 Identities=6% Similarity=-0.070 Sum_probs=117.1
Q ss_pred CcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1011 TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1011 p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
..-||-+.+... +.+.+-........ .+...-..+..|..|. ++.||+.. . +-|.+++........ ........
T Consensus 31 ~~G~lWigT~~G-L~ryDG~~~~~~~~-~~~~~~~~i~~i~~d~-~g~lWigT-~-~Gl~~yd~~~~~f~~-~~~~~~~~ 104 (758)
T 3ott_A 31 SEGLIWIGSNKG-LFSYDGYSTQQHFT-YGENNNTRIYCGVIID-NTYLYMGT-D-NGILVYNYRADRYEQ-PETDFPTD 104 (758)
T ss_dssp TTSCEEEEESSC-EEEECSSCEEECSC-TTSTTSSCEEEEEEET-TTEEEEEE-T-TEEEEEETTTTEECC-CSCCCCSC
T ss_pred CCCCEEEEECCC-ccccCCCceEEEEc-cCCCCCceEEEEEEcC-CCcEEEEe-C-CCeEEEeCCCCEEEC-cccCCCce
Confidence 456788888888 77775321100000 0001112356676675 46788875 3 348888854221111 00001112
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe---cC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV---ND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~---~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
...|+.+ .++||++... .+.+.+......+.+. .+ ......|+.|. .|.|++...++ |.+.+
T Consensus 105 i~~i~~~--~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~~G--------l~~~~ 171 (758)
T 3ott_A 105 VRTMALQ--GDTLWLGALN--GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYVGTYNG--------LCRYI 171 (758)
T ss_dssp EEEEEEE--TTEEEEEETT--EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEEEETTE--------EEEEE
T ss_pred EEEEEec--CCcEEEEcCC--cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEEEeCCC--------HhhCc
Confidence 3445443 7889887543 5666766543332221 11 23467888887 78887765433 88887
Q ss_pred cCCCceEEEEecC---C--CCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVEED---L--AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~~~---l--~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~ 1238 (1332)
......+.+.... + .....|..|.+++.||+... +-|.+++......+.+.. .....+|.. +.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~------d~~g 243 (758)
T 3ott_A 172 PSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE--GYLFQYFPSTGQIKQTEAFHNNSIKSLAL------DGNG 243 (758)
T ss_dssp TTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE--EEEEEEETTTTEEEEEEEEEEEEEEEEEE------CTTC
T ss_pred cCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC--CCCeEEcCCCCeEEeccCCCCCeEEEEEE------cCCC
Confidence 6654433221111 0 12446778866677787652 358888876543222222 334566777 4567
Q ss_pred EEEEEECCCCEEEEEEecCC
Q psy5806 1239 ELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.||+.-. +.++++++.++
T Consensus 244 ~lWigT~--~Gl~~~~~~~~ 261 (758)
T 3ott_A 244 DLLAGTD--NGLYVYHNDTT 261 (758)
T ss_dssp CEEEEET--TEEEEECCTTS
T ss_pred CEEEEeC--CceeEEecCCC
Confidence 7877763 46777776554
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=80.73 E-value=55 Score=35.97 Aligned_cols=199 Identities=12% Similarity=-0.046 Sum_probs=101.9
Q ss_pred ceEEEEEeCC-CcEEEEEeCCCCeEEEEECCCCCCceeE-eecCCCCceeeEEEecC-CeEEEEcCCCceEEEEeeCCce
Q psy5806 1046 SSIFFDYHYS-KNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMNDTIRDNFVIDWVA-NNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~-~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~~~p~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
.+.+++|.+. ++.++.+-...++|+..++.++...... .......+..+++.+.. +.+.++-...+.|.+.++.+..
T Consensus 59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~ 138 (316)
T 3bg1_A 59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG 138 (316)
T ss_dssp CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence 4678888653 3344555557788888887644322222 21223457788888653 4555666667789999887542
Q ss_pred E-EE---EecCCCCceEEEEcCCC----------------cEEEEEecCCCCCCCCCcEEEEecCCCce-EEE--EecCC
Q psy5806 1123 K-KI---LVNDLMEPLAIAVYPRR----------------GLLFYSHWGLYDNSPTTKIEKVYLDGSYR-TVL--VEEDL 1179 (1332)
Q Consensus 1123 ~-~~---~~~~~~~P~~iavdp~~----------------g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-~~l--~~~~l 1179 (1332)
. .. +..-......++.+|.. +.++.+-... ..=+|+. +..... ..+ +...-
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D----~~v~lWd--~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD----NLIKLWK--EEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTT----SBCCEEE--ECTTSCEEEEECCBCCS
T ss_pred CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCC----CeEEEEE--eCCCCccceeeecccCC
Confidence 1 11 11111234556666641 2344443222 1233443 332221 111 11122
Q ss_pred CCcceEEEecCC---CEEEEEEcCCCeEEEEecCCC--c---eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEE
Q psy5806 1180 AFPNELAIDFKQ---RRLFWADSTNKRIEYCDFFGR--S---RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSV 1250 (1332)
Q Consensus 1180 ~~p~glaiD~~~---~~LY~~d~~~~~I~~~d~dG~--~---~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V 1250 (1332)
.....+++.++. ..+..+-...++|...+++.. . .+.+.. .....++++ .+.+..| .+-...+.|
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~-----sp~g~~l-as~~~D~~v 286 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW-----SITANIL-AVSGGDNKV 286 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE-----CTTTCCE-EEEESSSCE
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE-----cCCCCEE-EEEcCCCeE
Confidence 345677777664 244555567788888887642 1 122222 444567777 2223333 333455666
Q ss_pred EEEEec
Q psy5806 1251 VIAREK 1256 (1332)
Q Consensus 1251 ~~~~~~ 1256 (1332)
...+..
T Consensus 287 ~lw~~~ 292 (316)
T 3bg1_A 287 TLWKES 292 (316)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 666643
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=80.41 E-value=0.35 Score=52.94 Aligned_cols=44 Identities=25% Similarity=0.582 Sum_probs=34.7
Q ss_pred CCcccCCCCCCcc--ccccCCCCccccCCCCeeEccCCccccccCcce
Q psy5806 969 PNACGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSCFSRTREF 1014 (1332)
Q Consensus 969 ~n~C~~~nGgCsh--lCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ 1014 (1332)
.++|+.....|++ .|.+++++|.|.|+.||. .|+++|.+...+-
T Consensus 5 iDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~Pq 50 (285)
T 1gl4_A 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQ 50 (285)
T ss_dssp --CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEETTCEE
T ss_pred chhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCCCCCCc
Confidence 6889877778973 699999999999999998 5788998764443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1332 | ||||
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-54 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 3e-39 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 3e-32 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 3e-28 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 4e-20 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-18 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 1e-16 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 9e-13 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 9e-51 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 7e-47 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 4e-36 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 7e-34 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-17 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 1e-12 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 6e-13 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-05 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 6e-13 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 4e-06 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 1e-12 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 4e-07 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-12 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 4e-06 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-12 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-06 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 3e-12 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 6e-06 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 5e-12 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 2e-10 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 5e-06 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 9e-06 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 6e-12 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 4e-09 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 2e-07 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 1e-04 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 7e-12 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 4e-09 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 2e-07 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 2e-04 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 1e-11 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 6e-09 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 1e-07 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 3e-04 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 2e-11 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 2e-05 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 2e-11 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 4e-08 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 4e-11 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 1e-10 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 3e-06 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 4e-05 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 4e-11 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 8e-08 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 3e-06 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 1e-05 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 6e-11 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 2e-10 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 2e-06 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 3e-05 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 1e-10 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 6e-07 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 1e-10 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 1e-06 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 2e-10 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 2e-06 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 3e-10 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 3e-07 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 3e-10 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 3e-05 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 1e-09 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 1e-05 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 2e-09 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 1e-06 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 1e-06 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 9e-09 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 4e-05 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 1e-08 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 6e-07 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 4e-06 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 4e-08 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 9e-07 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 4e-06 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 7e-08 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 1e-05 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 1e-04 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 1e-07 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 4e-06 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 5e-06 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 2e-06 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 2e-05 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 5e-04 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 2e-06 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 3e-04 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 0.001 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 2e-06 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 3e-04 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 8e-04 | |
| d1dx5i3 | 40 | g.3.11.1 (I:423-462) Thrombomodulin, different EGF | 1e-04 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 1e-04 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 3e-04 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.001 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.001 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 4e-04 | |
| d1emoa1 | 43 | g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa | 0.001 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 0.002 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 188 bits (479), Expect = 2e-54
Identities = 87/252 (34%), Positives = 138/252 (54%), Gaps = 23/252 (9%)
Query: 162 KRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVW---------------------NTHIV 200
++++L +YT++I NL NV+A+D N + W ++
Sbjct: 13 RKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 72
Query: 201 HTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDA 260
+Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V P
Sbjct: 73 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132
Query: 261 FVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSD 320
F++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D
Sbjct: 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192
Query: 321 LDGSRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFP 378
++G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252
Query: 379 MNIRSYHPHRQP 390
++ +H QP
Sbjct: 253 EDMVLFHNLTQP 264
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (366), Expect = 3e-39
Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 16/253 (6%)
Query: 709 FLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRF 768
+L + ++R+++LD ++ L+ V ++D + + IYWSD+S++ I +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 769 D----MTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
D ++ + ++ D+ + +AVD I IYWTD T+ V+D G K LF N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSD 883
+PR+IVV G M W DW +I+ ++G + TE I WP+ + +D
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWGT----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-L 174
Query: 884 NPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRA 940
+ +LYWVD+ H+I + G K + +HP++L V + V+WTD+ + I+ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 941 NKYDVKDIVEFAQ 953
N+ D+ A+
Sbjct: 235 NRLTGSDVNLLAE 247
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (313), Expect = 3e-32
Identities = 59/207 (28%), Positives = 111/207 (53%), Gaps = 8/207 (3%)
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHI 496
L + + ++R L T + N+++VVA+ E A++ +YW+D+ I +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 497 NGTFQYN----VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + VI + + P G+A+DW + +YWT+S + V++ G LF +N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
S+PR I V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLY
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179
Query: 613 WANVGLKTIEFTNLDGTRKQTLIALHH 639
W + L +I +++G ++T++
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEK 206
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 3e-28
Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 27/280 (9%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
+L +T+R +R+++LD ++ T P + + D + N IY++D+ + +
Sbjct: 3 YLFFTNRHE-VRKMTLDRSE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 1074 M---SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVND 1129
+ + + + D +DW+ +NIY+ DS + T++VA + G K + +
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
+P AI V P G ++++ WG KI+K L+G LV E++ +PN + +D
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDW 1245
RL+W DS I D G +RK ++ P+ L+V + +++WTD
Sbjct: 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDI 226
Query: 1246 EAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ 1285
++ A TG DV+L+ N ++ Q
Sbjct: 227 INEAIFSAN--RLTGS-DVNLLAENLLSPEDMVLFHNLTQ 263
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 4e-20
Identities = 39/215 (18%), Positives = 85/215 (39%), Gaps = 9/215 (4%)
Query: 446 RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI 505
+ + ++++ +A + + ++YW D G ++ A G + +
Sbjct: 56 STQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF 115
Query: 506 RHNTKKPAGVAIDWRTNKLYWTES-EYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIG 564
R N KP + +D +YWT+ I+ L+G L +N+ P I ++ +
Sbjct: 116 RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 175
Query: 565 GIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFT 624
G +YW LH I ++G +R + D + ++ + +++W ++ + I
Sbjct: 176 GRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 625 NLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRR 659
N L+A ++ D+ +FH
Sbjct: 235 NRLTGSDVNLLA-------ENLLSPEDMVLFHNLT 262
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.2 bits (207), Expect = 2e-18
Identities = 38/261 (14%), Positives = 87/261 (33%), Gaps = 9/261 (3%)
Query: 576 HKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI 635
H++ +D S L + L+N L ++ ++R+YW+++ + I T LD +
Sbjct: 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68
Query: 636 ALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695
+ + GL I ++ G + G+
Sbjct: 69 DTVISRDIQAPDGLAVDWIHSNI------YWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 696 REDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYW 755
R + + L ++ + +D + +YW
Sbjct: 123 R--AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW 180
Query: 756 SDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN 815
D +I + + R+ ++ ++ ++ K++WTD+ + I ++ +
Sbjct: 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240
Query: 816 AKVLFWLNLYRPRSIVVHYGL 836
L NL P +V+ + L
Sbjct: 241 DVNLLAENLLSPEDMVLFHNL 261
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.2 bits (194), Expect = 1e-16
Identities = 46/294 (15%), Positives = 94/294 (31%), Gaps = 54/294 (18%)
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDG----SRRQQ 328
+ ++ +D S ++ N+ L + +R+YW++ I S+ LD S
Sbjct: 12 VRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70
Query: 329 VITKGLPHPFGITL--YEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHP 386
VI++ + P G+ + ++WTD ++S A+ + P I
Sbjct: 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 130
Query: 387 HRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLR 446
H + P L ++
Sbjct: 131 HGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------------------- 157
Query: 447 ISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIR 506
L N++ I + + LYW D + I+ +NG + ++
Sbjct: 158 --------------LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203
Query: 507 HNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAV 560
+ ++ +K++WT+ I +N L +NL P D+ +
Sbjct: 204 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (164), Expect = 9e-13
Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 59/302 (19%)
Query: 311 AKHHFIESSDLDGSRRQQVITKGLPHPFGIT--LYEDFVFWTDWHTKSISSANKYTGRNI 368
H + LD S +I L + + + + ++W+D + I S +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 65
Query: 369 KT----VHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSP 424
+ + + P + + Y + S R T
Sbjct: 66 SSYDTVISRDIQAPDGL-AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------- 116
Query: 425 DNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWA 484
N AI + + +YW
Sbjct: 117 ---------------------------------------ENGSKPRAIVVDPVHGFMYWT 137
Query: 485 DV-ENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTY 543
D +I + +NG Y+++ N + P G+ +D + +LYW +S+ + I +++G
Sbjct: 138 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 197
Query: 544 PTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM-DGSHRHILASDSLKNPTGL 602
+ ++ ++W + I A GS ++LA + L +P +
Sbjct: 198 RKTILEDEKRLAHPFSLAVFEDKVFWTDIIN-EAIFSANRLTGSDVNLLAEN-LLSPEDM 255
Query: 603 AI 604
+
Sbjct: 256 VL 257
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 178 bits (451), Expect = 9e-51
Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 26/251 (10%)
Query: 162 KRVSLSNKKYTA------IIRNLHNVLAVDYHYKKNLLVW-----------------NTH 198
+R+ L + ++ + + ++ W T
Sbjct: 13 ERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT 72
Query: 199 IVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPR 258
I+ + S +++D + +FWTD+ R+E +DG R++L + PR ++ P
Sbjct: 73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV 132
Query: 259 DAFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIE 317
++WTDW + PKIE MDG+NR+++ +N+ PNGLT D +L W +A H E
Sbjct: 133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192
Query: 318 SSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVH-SGLH 376
+ R++V+ GL +PF +T Y +++TDW T S+ + + + + T H
Sbjct: 193 CLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251
Query: 377 FPMNIRSYHPH 387
I
Sbjct: 252 RLYGITIALSQ 262
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 166 bits (422), Expect = 7e-47
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 8/255 (3%)
Query: 709 FLLVSQTDKIRQISLD---VEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
LL +QT KI ++ L+ ++ K++ + D ++ +YW+DISE +I R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
++ DL E IA+D +GR I+WTD I V+ +DG +VLF L
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSDN 884
PR IV G + W DW+R N +IE +HMDGTNR + + + P+ L D +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FS 178
Query: 885 PKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944
+L WVD H E A ++ +P+ +T +Y+TD + + + +
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238
Query: 945 VKDIVEFAQVDRPWL 959
K++ F + L
Sbjct: 239 SKEMDTFHPHKQTRL 253
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 135 bits (341), Expect = 4e-36
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 3/202 (1%)
Query: 437 LIYARQKDLRISQL--TEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRA 494
L++A+ + L T + K ++ +A++ + +YW D+ I RA
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 495 HINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
++G +IR + P G+A+D ++WT+S+ + IEV+ +DGT +LF L
Sbjct: 64 SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 555 PRDIAVNPIGGIMYWCSWG-DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
PR I +P+ G +YW W D KIE + MDG++R ILA D+L P GL D +S+L W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 614 ANVGLKTIEFTNLDGTRKQTLI 635
+ G E N ++ ++
Sbjct: 184 VDAGTHRAECLNPAQPGRRKVL 205
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 129 bits (325), Expect = 7e-34
Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 20/271 (7%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPV---TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLR 1070
LL+ G I R+ L+ + I + ++Y+ D+ ++
Sbjct: 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 1071 TFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVND- 1129
+ I + + +D + I++ DSQ+ I VA+ DG +++L +
Sbjct: 62 RASLHGGEPTTIIRQDLGS-PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG 120
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
L+ P I P RG L+++ W KIE ++DG+ R +L +++L PN L D
Sbjct: 121 LVNPRGIVTDPVRGNLYWTDWN----RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAM 1248
+L W D+ R E + R+ V+ + P+ ++ LY+TDW+
Sbjct: 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-------NLYYTDWKTN 229
Query: 1249 SVVIAREKSDTGQWDVHLIRSNQEDFLNIKA 1279
SV+ + + + + D Q I
Sbjct: 230 SVIAM-DLAISKEMDT-FHPHKQTRLYGITI 258
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 81.5 bits (200), Expect = 2e-17
Identities = 42/219 (19%), Positives = 87/219 (39%), Gaps = 10/219 (4%)
Query: 434 EELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINR 493
++++ + + I + + T++ ++ S IA + +++W D + I
Sbjct: 47 DKVVYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEV 105
Query: 494 AHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN--WIEVSNLDGTYPTLLFWQN 551
A ++GT + + P G+ D LYWT+ + IE S++DGT +L N
Sbjct: 106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN 165
Query: 552 LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
L P + + + W G H+ E R + L+ P + L
Sbjct: 166 LGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNL 221
Query: 612 YWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLT 650
Y+ + ++ +L +++ H T++ G+T
Sbjct: 222 YYTDWKTNSVIAMDLAISKEMDTF---HPHKQTRLYGIT 257
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.6 bits (164), Expect = 1e-12
Identities = 50/254 (19%), Positives = 82/254 (32%), Gaps = 14/254 (5%)
Query: 272 KIERVEMDGSN-----RKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRR 326
KIER+ ++ + K L GL D + +YWT+ I + L G
Sbjct: 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70
Query: 327 QQVITKGLPHPFGITL--YEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSY 384
+I + L P GI L +FWTD I A + +GL P I
Sbjct: 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI-VT 129
Query: 385 HPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKD 444
P R Y + I + + L N ++ L +
Sbjct: 130 DPVRGNLYWTDWNRDN-PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188
Query: 445 LRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNV 504
R L P VL ++ A+ +LY+ D + + + + + +
Sbjct: 189 HRAECLNPAQPGRRKVLE--GLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDT 244
Query: 505 I-RHNTKKPAGVAI 517
H + G+ I
Sbjct: 245 FHPHKQTRLYGITI 258
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (151), Expect = 6e-13
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 55 PPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
P +C P E C CI + W CDG DC DE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
P C CI +W+CD + DC DE
Sbjct: 8 PGEFACA-NSRCIQERWKCDGDNDCLDNSDEAPA 40
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (151), Expect = 6e-13
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 53 ASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
++ +C +E +C G CI W+CDG +C G DE
Sbjct: 2 SAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 4e-06
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+C G CI +W CD +C+ G DE +
Sbjct: 14 QCQ-DGKCISYKWVCDGSAECQDGSDESQE 42
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (149), Expect = 1e-12
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
K CS E RC G CI + ++CD DC G DE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (108), Expect = 4e-07
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+C+ G CI Q+ CD++ DC G DE CP
Sbjct: 9 RCH-DGKCISRQFVCDSDRDCLDGSDEASCP 38
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (147), Expect = 2e-12
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
C PDE +C+ G+CI + CD DC DE C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (101), Expect = 4e-06
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+C+ G CI QCD E+DC+ DE+ C
Sbjct: 9 QCS-DGNCIHGSRQCDREYDCKDMSDEVGC 37
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (146), Expect = 3e-12
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CS E C +G CI +W CDG PDC DE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (103), Expect = 2e-06
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
C +G CI + W+CD DC+ DE C
Sbjct: 4 AFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENC 36
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (146), Expect = 3e-12
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
CS + +C +G CI + W CDG DC DE + N
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (100), Expect = 6e-06
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
KCN +G CIP W CD + DC DE
Sbjct: 11 KCN-SGRCIPEHWTCDGDNDCGDYSDETHA 39
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (144), Expect = 5e-12
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 970 NACGSNNGGCSHLCLRNPTN------FTCACPTGILLSADRRSCFS 1009
+NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 50
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.3 bits (133), Expect = 2e-10
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 665 PCNE---NNGGCSHLCLIAPKD-----GIRCVCPAGNLLREDRRTC 702
C +NGGC +LCL AP+ C CP G LL D R+C
Sbjct: 3 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (100), Expect = 5e-06
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTK----GYVCGCPDDLEPNE 1323
NGGC +LC + + C CPD +
Sbjct: 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 43
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 9e-06
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 401 CSHICLPNKH------RFTCQCPLGLTLSPDNKSC 429
C ++CLP +FTC CP G+ L+ D +SC
Sbjct: 14 CQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (144), Expect = 6e-12
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (124), Expect = 4e-09
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NG C C + + C C G L ++ + C
Sbjct: 3 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKAC 38
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 2e-07
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C C ++ C C G TL+ + K+C
Sbjct: 10 CDQFCHEEQNSVVCSCARGYTLADNGKAC 38
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (90), Expect = 1e-04
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
C+ DNG C C + VC C
Sbjct: 3 CSLDNGDCDQFCHEEQN--SVVCSCARGYT 30
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (144), Expect = 7e-12
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC+H CL C+C G L D C
Sbjct: 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 37
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (123), Expect = 4e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC+H CL RC C G L +D C
Sbjct: 2 CSLDNGGCTHYCLEEV-GWRRCSCAPGYKLGDDLLQC 37
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (111), Expect = 2e-07
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C+H CL C C G L D C
Sbjct: 9 CTHYCLEEVGWRRCSCAPGYKLGDDLLQC 37
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (89), Expect = 2e-04
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
C+ DNGGC+H C + C C
Sbjct: 2 CSLDNGGCTHYCLEEVG--WRRCSCAP 26
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (142), Expect = 1e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC C + C+C G +L D +SC
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.0 bits (122), Expect = 6e-09
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC C +RC C G +L +D ++C
Sbjct: 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSC 36
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.1 bits (112), Expect = 1e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
C C + C C G L D+KSC +
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER 41
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.9 bits (88), Expect = 3e-04
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
C+ DNGGC C + C C
Sbjct: 1 CSLDNGGCDQFCREERS--EVRCSCAHGYV 28
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (140), Expect = 2e-11
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
C P +C + CI + W CD PDC G DE
Sbjct: 3 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (96), Expect = 2e-05
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
P +CN + CIP W CDN+ DCE G DE
Sbjct: 5 PASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQ 37
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (139), Expect = 2e-11
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 56 PKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCN 94
P C DE +C G CI W CDG DC DE++C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (115), Expect = 4e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+C G CIP +W+CD + DC DE C
Sbjct: 10 QCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (139), Expect = 4e-11
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCS---ENPSKFLLVSQTDK 717
CN NG C C + + + C C G L E++++C P + VSQT K
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK 57
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (135), Expect = 1e-10
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C NG C C + N C+C G L+ +++SC
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 39
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (102), Expect = 3e-06
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 401 CSHICLPN-KHRFTCQCPLGLTLSPDNKSCSESPE 434
C C + ++ C C G L+ + KSC +
Sbjct: 10 CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 44
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (94), Expect = 4e-05
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
C NG C C VC C +
Sbjct: 3 CNIKNGRCEQFCKNSADN-KVVCSCTEGYR 31
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (137), Expect = 4e-11
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N C NNGGCSH+C + C CP G L +R C
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (113), Expect = 8e-08
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
T+ C +NNGGCSH+C G C+CP G L +R C
Sbjct: 2 TNECLDNNGGCSHVCNDLK-IGYECLCPDGFQLV-AQRRC 39
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (102), Expect = 3e-06
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1288 WNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 2 TNECLDNNGGCSHVCNDLKI--GYECLCPDGFQ 32
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (98), Expect = 1e-05
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
CSH+C K + C CP G L + C
Sbjct: 12 CSHVCNDLKIGYECLCPDGFQLV-AQRRC 39
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (137), Expect = 6e-11
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSHLCLRNP-TNFTCACPTGILLSADRRSC 1007
C + NGGC C + T +C C G L AD SC
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (132), Expect = 2e-10
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C NGGC C C C G L D +C+
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (104), Expect = 2e-06
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPE 434
C C + + +C+C G +L D SC+ + E
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 43
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 3e-05
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
C +NGGC C TK C C +
Sbjct: 2 CVNENGGCEQYCSDHTGTK-RSCRCHEGYS 30
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (134), Expect = 1e-10
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 59 CSPDEHRC--TTGHCILKTWLCDGIPDCSLGEDERNC 93
C + C CI + W CDG DC G DE+ C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (107), Expect = 6e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+ R CIP W+CD + DC+ G DE C
Sbjct: 9 DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 55.3 bits (133), Expect = 1e-10
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 59 CSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNC 93
C P + RC+ G C + WLCDG PDC G DE C
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 44.1 bits (104), Expect = 1e-06
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
G C P W CD DC+ G DE C
Sbjct: 12 PPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (132), Expect = 2e-10
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 59 CSPDEHRCTTGH--CILKTWLCDGIPDCSLGEDERNC 93
C E C CI +W CDG DC GEDE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (102), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+ + CIP W+CD E DC+ GEDE C
Sbjct: 5 EISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 54.4 bits (131), Expect = 3e-10
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 59 CSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNC 93
C EH+C CI K ++CDG DC GEDE++C
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 45.6 bits (108), Expect = 3e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+++ CI + CD DC GEDE C
Sbjct: 7 EHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (131), Expect = 3e-10
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
P++ +C +G CI +C+ DC DE
Sbjct: 7 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 42
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (94), Expect = 3e-05
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
KC+ +G CI C+ DC DE
Sbjct: 13 KCH-SGECITLDKVCNMARDCRDWSDEPIK 41
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 53.0 bits (127), Expect = 1e-09
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 59 CSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNCNKTCD 98
C +C CI +CDG DC DE CD
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD--VCD 41
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 41.0 bits (96), Expect = 1e-05
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
++ CI CD DC DE
Sbjct: 6 TFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (125), Expect = 2e-09
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C + CS LC+ + C C G L ++C
Sbjct: 2 DEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (105), Expect = 1e-06
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 668 ENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
++ CS LC+ G +C C G L + C
Sbjct: 5 QDPDTCSQLCVNLE-GGYKCQCEEGFQLDPHTKAC 38
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (105), Expect = 1e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C P CS +C+ + + CQC G L P K+C
Sbjct: 4 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 50.2 bits (120), Expect = 9e-09
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 59 CSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNCN 94
C E C CI CDG DC G DE
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 39.8 bits (93), Expect = 4e-05
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCS 60
+ + CI CD E DC G DE P+ CS
Sbjct: 7 ESECRGDVPECIHDLLFCDGEKDCRDGSDE-------DPETCS 42
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (119), Expect = 1e-08
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 970 NACGSNNG---GCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C G C H C + F C+C G +L ++R+C
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 42
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 6e-07
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
C H C + F C C G L + ++CSE
Sbjct: 14 CDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 4e-06
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 666 CNENNG---GCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C G C H C G C C AG +L ++RTCSE
Sbjct: 4 CQVAPGEAPTCDHHCHNHL-GGFYCSCRAGYVLHRNKRTCSE 44
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (115), Expect = 4e-08
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGS-NNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N C + CSH C + C+CP L D ++C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (105), Expect = 9e-07
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705
+ + CSH C G C CP L +D + C N
Sbjct: 4 TDFVDVPCSHFCNNFI-GGYFCSCPPEYFLHDDMKNCGVN 42
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (101), Expect = 4e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
CSH C + C CP L D K+C
Sbjct: 11 CSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (113), Expect = 7e-08
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N C S C+ P ++ C CP L+ R C
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (97), Expect = 1e-05
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 12/53 (22%)
Query: 650 TDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
TD++ C + S C+ P C CP L R C
Sbjct: 1 TDVN-----------ECLDPTTCISGNCVNTP-GSYICDCPPDFELNPTRVGC 41
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (90), Expect = 1e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
S C+ + C CP L+P C
Sbjct: 13 ISGNCVNTPGSYICDCPPDFELNPTRVGC 41
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (112), Expect = 1e-07
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 970 NACGSNNGG---CSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C ++ G C H C + C+C G +L ++ +C
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (100), Expect = 4e-06
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 666 CNENNGG---CSHLCLIAPKDGIRCVCPAGNLLREDRRTCS 703
C + G C H C G C C G +L +++ TCS
Sbjct: 4 CRTSLGDSVPCDHYCHNYL-GGYYCSCRVGYILHQNKHTCS 43
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.6 bits (100), Expect = 5e-06
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430
C H C + C C +G L + +CS
Sbjct: 14 CDHYCHNYLGGYYCSCRVGYILHQNKHTCS 43
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 2e-06
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C HLC + C+C G L DR SC
Sbjct: 13 SGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 2e-05
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 397 APKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430
C H+C + C C G L D SC
Sbjct: 18 PQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 5e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 663 THPCNEN-NGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCS 703
+ E+ C HLC G C C G L+EDR +C
Sbjct: 11 SKSGEEDPQPQCQHLCHNYV-GGYFCSCRPGYELQEDRHSCQ 51
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (102), Expect = 2e-06
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGCSH-LCLRNPTNFTCACPTGILLSADRRSC 1007
+ C + C +C ++ C CP G LS + +C
Sbjct: 3 DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (87), Expect = 3e-04
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C + C + RC CP G+ L + C
Sbjct: 5 CQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 396 CA--PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSC 429
C P +C +C + + C+CP G LSP+ +C
Sbjct: 5 CQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (102), Expect = 2e-06
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGCS-HLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C G C C+ +F C CPTG L+ D R C
Sbjct: 4 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C+ F C+CP G L+ D + C
Sbjct: 14 QGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (84), Expect = 8e-04
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 666 CNENNGGCS-HLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C E G C C+ +C CP G L ED R C
Sbjct: 6 CQELPGLCQGGKCINTF-GSFQCRCPTGYYLNEDTRVC 42
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (89), Expect = 1e-04
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSA-DRRSC 1007
+ C N G CS +C P F C C L+ C
Sbjct: 3 DEC-ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 30/244 (12%), Positives = 72/244 (29%), Gaps = 10/244 (4%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT 309
P V V V+ T G ++ ++ + V+ ++ P GL +D +Y T
Sbjct: 16 PSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVT 73
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIK 369
+ + + + ++ + V+ D + +
Sbjct: 74 DFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 133
Query: 370 TVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
+GL+ + N + +T
Sbjct: 134 LPFTGLN---DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD 190
Query: 430 SESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENG 489
+ + + +++ T TVLP + + +A+A ++ ++Y AD N
Sbjct: 191 EAGTVYVTEHNTNQVVKLL----AGSTTSTVLPFTGLNTPLAVAV-DSDRTVYVADRGND 245
Query: 490 EINR 493
+ +
Sbjct: 246 RVVK 249
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.1 bits (97), Expect = 3e-04
Identities = 29/253 (11%), Positives = 66/253 (26%), Gaps = 11/253 (4%)
Query: 292 FWPNGLTIDFEEDRLYWTE-AKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWT 350
P+G+ +D +Y T + + + + GL P G+ + +
Sbjct: 14 LSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYV 72
Query: 351 DWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKH 410
+ + + GL++P + V +
Sbjct: 73 TDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 132
Query: 411 RFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVV 470
++ +Y D E + VLP ++ +
Sbjct: 133 VLPFTG-------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW 185
Query: 471 AIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESE 530
IA + A Y + ++ + T + P VA+D +Y +
Sbjct: 186 GIAVDEAGTV-YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRG 243
Query: 531 YNWIEVSNLDGTY 543
+ + +
Sbjct: 244 NDRVVKLTSLEHH 256
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.2 bits (92), Expect = 0.001
Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 4/148 (2%)
Query: 474 WESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNW 533
++Y AD N + + Q + P GVA+D + +Y T+++ N
Sbjct: 104 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNR 162
Query: 534 IEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILAS 593
+ + +L + +++ P IAV+ + + + +++ + +L
Sbjct: 163 VVKLEAESNNQVVLPFTDITAPWGIAVDEA--GTVYVTEHNTNQVVKLLAGSTTSTVLPF 220
Query: 594 DSLKNPTGLAIDLENSRLYWANVGLKTI 621
L P +A+D + +Y A+ G +
Sbjct: 221 TGLNTPLAVAVD-SDRTVYVADRGNDRV 247
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.8 bits (91), Expect = 0.001
Identities = 30/260 (11%), Positives = 64/260 (24%), Gaps = 20/260 (7%)
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
P +AV+ G + Y S G ++ + +L + L P GLA+D + +
Sbjct: 16 PSGVAVDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD--GAGTVYV 72
Query: 615 NVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCS 674
+ + L V R + + + +
Sbjct: 73 TDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 132
Query: 675 HLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLP 734
L D + + V+
Sbjct: 133 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA----------------ESNNQVVL 176
Query: 735 LRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGR 794
+ +Y ++ + + ++ T L LN ++AVD+
Sbjct: 177 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 236
Query: 795 KIYWTDMNAQTIMVSDIDGK 814
+Y D ++
Sbjct: 237 -VYVADRGNDRVVKLTSLEH 255
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 41.6 bits (96), Expect = 4e-04
Identities = 21/226 (9%), Positives = 54/226 (23%), Gaps = 7/226 (3%)
Query: 472 IAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEY 531
+ ++ L+ DV G I + + + PA + I + +L+
Sbjct: 45 LNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGD 102
Query: 532 NWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL 591
T + + + + + +
Sbjct: 103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 162
Query: 592 ASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTD 651
+ D I + A + + + + IAL V + G T
Sbjct: 163 SPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 220
Query: 652 IDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLRE 697
F + + + ++ + + G + +
Sbjct: 221 PYYFTGHEGPDSCCIDSD--DNLYVAMYGQ-GRVLVFNKRGYPIGQ 263
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (83), Expect = 0.001
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C + C+ ++ C CP G +L C
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNEC 41
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 39.6 bits (91), Expect = 0.002
Identities = 15/211 (7%), Positives = 44/211 (20%), Gaps = 7/211 (3%)
Query: 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
E++A G I+ T+ I+ DG + + + + L A
Sbjct: 30 LENLASAPDGT-IFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDL--VAT 84
Query: 844 WSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903
+ + + I+ + + D+ + I +
Sbjct: 85 GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVV 142
Query: 904 TGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAA 963
+ + + + + + ++
Sbjct: 143 QPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPE 202
Query: 964 QNISFPNACGSNNGGCSHLCLRNPTNFTCAC 994
+ N +L +
Sbjct: 203 IFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1332 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.78 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.76 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.69 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.62 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.62 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.58 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.5 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.44 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.38 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.31 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.3 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.28 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.28 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.18 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 99.17 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 99.14 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.13 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 99.12 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.12 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 99.12 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 99.11 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 99.1 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 99.06 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.06 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 99.06 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 99.04 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 99.04 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 99.03 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 99.01 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.99 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.98 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.98 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.98 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.97 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.97 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.96 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.96 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.95 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.95 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 98.95 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.92 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.91 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.9 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.9 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.9 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.89 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.88 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.87 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.87 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.85 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.84 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 98.8 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 98.8 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.79 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.77 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.77 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.77 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.77 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.76 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.76 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.72 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.72 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.67 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.65 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.65 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.63 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.62 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.55 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.51 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.51 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.5 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.44 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 98.37 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.29 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.27 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.24 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.24 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.04 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.04 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.04 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.0 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.0 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.93 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.9 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 97.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.69 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.67 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.59 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.53 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.47 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.42 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.35 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.11 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.99 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.93 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.6 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.34 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.11 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.06 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.97 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 95.83 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.83 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.53 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 95.51 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.48 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 95.36 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.08 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.97 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 94.88 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.84 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 94.78 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 94.39 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 94.3 | |
| d1dx5i1 | 43 | Thrombomodulin, different EGF-like domains {Human | 93.88 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 93.11 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 92.92 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 92.87 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.73 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 92.54 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 92.5 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 92.39 | |
| d1dx5i1 | 43 | Thrombomodulin, different EGF-like domains {Human | 92.32 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 92.22 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 91.88 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 91.71 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 91.66 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 90.06 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 87.68 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 87.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 86.79 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 86.46 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 86.27 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 85.83 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 85.75 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 85.55 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 85.29 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 85.1 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 84.91 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 83.39 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 80.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 80.75 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 80.41 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 80.28 | |
| d1k36a_ | 46 | Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI | 80.28 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 80.07 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-41 Score=379.91 Aligned_cols=231 Identities=37% Similarity=0.763 Sum_probs=215.7
Q ss_pred CcccccCcceeEEeecccceeEEeeeccceeEEEEE---------------------EEEEecccccCceeeecccCcee
Q psy5806 162 KRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNT---------------------HIVHTGMQSVGSLSVDWVHDFVF 220 (1332)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~iywsd---------------------~v~~~g~~~~~~lavDWi~~~lY 220 (1332)
+++.+++.++..++.++.+++|||||+.+++|||+| .++..++..|.||||||++++||
T Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY 92 (266)
T d1ijqa1 13 RKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY 92 (266)
T ss_dssp EEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEE
T ss_pred EEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEE
Confidence 456677778888888999999999999999999999 23445677899999999999999
Q ss_pred eecCCCCeEEEEcCCCCceEEEEeCCCCCCceEEEcCCCCeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeee
Q psy5806 221 WTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTID 300 (1332)
Q Consensus 221 w~d~~~~~I~v~~~dg~~~~~l~~~~~~~pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD 300 (1332)
|+|...++|+|+++||+.+++++...+.+|++|||||.+|+|||++|+..++|+|++|||+++++|+.+.+.+|+||+||
T Consensus 93 ~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD 172 (266)
T d1ijqa1 93 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172 (266)
T ss_dssp EEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred EEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCeEEEEeCCCCcEEEEEcC--CCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCc
Q psy5806 301 FEEDRLYWTEAKHHFIESSDLDGSRRQQVITK--GLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFP 378 (1332)
Q Consensus 301 ~~~~rlYw~D~~~~~i~~~~~dG~~~~~v~~~--~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p 378 (1332)
+.+++|||+|+..+.|+++++||++++.++.. .+++|++|++++++|||+||..++|++++|.+|++.+.+......|
T Consensus 173 ~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p 252 (266)
T d1ijqa1 173 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252 (266)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCC
T ss_pred ccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCc
Confidence 99999999999999999999999999888754 4789999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCCccc
Q psy5806 379 MNIRSYHPHRQPNY 392 (1332)
Q Consensus 379 ~~i~~~h~~~qp~~ 392 (1332)
++|+++||.+||.+
T Consensus 253 ~~i~v~~~~~QP~g 266 (266)
T d1ijqa1 253 EDMVLFHNLTQPRG 266 (266)
T ss_dssp CCEEEESGGGSCCC
T ss_pred eEEEEECCccCCCC
Confidence 99999999999964
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-39 Score=365.67 Aligned_cols=255 Identities=26% Similarity=0.499 Sum_probs=229.2
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC---CCceeEeecCCC
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS---TRIKPIPLMNDT 1089 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g---~~~~~i~~~~~~ 1089 (1332)
+||||+.+++ |++++++..... ..+++++++.+||||+.+++|||+|...+.|++++++.. +..++++..++.
T Consensus 2 ~fLl~s~~~~-I~~~~l~~~~~~---~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 2 AYLFFTNRHE-VRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp CEEEEECBSS-EEEEETTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred CEEEEECCCe-EEEEECCCCcce---eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 6999999999 999999865443 225688899999999999999999999999999998731 234566667788
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
.|.||||||.+++|||+|...++|++++++|..+.+ +..++..|++|||||.+|+|||++++. .++|+|++|||
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~-----~~~I~r~~~dG 152 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNG 152 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----SCEEEEEETTS
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC-----CcceeEeccCC
Confidence 999999999999999999999999999999998766 666788999999999999999999886 57999999999
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEE
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
++++.++..++..|+||++|+.+++|||+|...++|++++++|+++++++. ..+|++||+ ++++|||+|
T Consensus 153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav-------~~~~ly~td 225 (266)
T d1ijqa1 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-------FEDKVFWTD 225 (266)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-------ETTEEEEEE
T ss_pred CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEE-------ECCEEEEEE
Confidence 999999988899999999999999999999999999999999999888876 578999999 999999999
Q ss_pred CCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCCCCC
Q psy5806 1245 WEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQL 1286 (1332)
Q Consensus 1245 ~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~q~ 1286 (1332)
+.+++|++++|.+| ++.+++..+...|++|+||++.+|+
T Consensus 226 ~~~~~I~~~~~~~g---~~~~~~~~~~~~p~~i~v~~~~~QP 264 (266)
T d1ijqa1 226 IINEAIFSANRLTG---SDVNLLAENLLSPEDMVLFHNLTQP 264 (266)
T ss_dssp TTTTEEEEEETTTC---CCCEEEECSCSCCCCEEEESGGGSC
T ss_pred CCCCeEEEEECCCC---cceEEEEcCCCCceEEEEECCccCC
Confidence 99999999999999 7889999999999999999998884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-38 Score=356.38 Aligned_cols=255 Identities=22% Similarity=0.420 Sum_probs=226.0
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCc---ccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPV---TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~---~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
.||||+.+++ |++++++....... .......+.+.+||||+.+++|||+|...++|++++++ |+..++++..++.
T Consensus 2 ~fLl~s~~~~-I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~-g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQTGK-IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEEEE-EEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEECTTCC
T ss_pred CEEEEeCCCe-EEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcc-cCCcEEEEEeccc
Confidence 6999999999 99999986543311 11112345678999999999999999999999999988 7788888877888
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
.|.||||||++++|||++...++|++++++|+.+++ +..++..|++|||||.+|+|||++++. ..++|+|++|||
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~----~~~~I~r~~~dG 155 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDG 155 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTS
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC----CCcEEEEecCCC
Confidence 999999999999999999999999999999998776 555678999999999999999999875 357899999999
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
++++.++..++..|+|||+|+.+++|||+|...++|++++++|..+++++. ..+|+|||+ ++++||||||.+
T Consensus 156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav-------~~~~lYwtd~~~ 228 (263)
T d1npea_ 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS-------YGKNLYYTDWKT 228 (263)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE-------ETTEEEEEETTT
T ss_pred CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEE-------ECCEEEEEECCC
Confidence 999999988999999999999999999999999999999999999988888 889999999 999999999999
Q ss_pred CEEEEEEecCCCCcceEEEEe-cCCCCeeeEEEEeCC
Q psy5806 1248 MSVVIAREKSDTGQWDVHLIR-SNQEDFLNIKAISAS 1283 (1332)
Q Consensus 1248 ~~V~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~ 1283 (1332)
++|++++|.+| +..+++. .+...|++|+|++++
T Consensus 229 ~~I~~~~~~~g---~~~~~~~~~~~~~~~gi~v~~~~ 262 (263)
T d1npea_ 229 NSVIAMDLAIS---KEMDTFHPHKQTRLYGITIALSQ 262 (263)
T ss_dssp TEEEEEETTTT---EEEEEECCSSCCCCCCEEEECSC
T ss_pred CEEEEEECCCC---ccceEECCCCCCCcceEEEeCCC
Confidence 99999999998 6666554 567899999999874
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5e-37 Score=343.17 Aligned_cols=237 Identities=30% Similarity=0.524 Sum_probs=215.8
Q ss_pred cceEeeccceeEEEecCCCCCcc---eeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCc
Q psy5806 708 KFLLVSQTDKIRQISLDVEYRYP---IVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRT 784 (1332)
Q Consensus 708 ~~ll~s~~~~i~~i~l~~~~~~~---~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p 784 (1332)
.||||+++..|+++.++...... ......+.+.+++||||..+++|||+|...+.|+++.++|+..++++..++..|
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 58999999999999998754321 112223456789999999999999999999999999999999999998889999
Q ss_pred cceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCc
Q psy5806 785 ESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR 864 (1332)
Q Consensus 785 ~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~ 864 (1332)
.||||||++++|||+|...++|++.+++|+.+++++..++..|++|||||.+|+|||++++.. .++|+|+.|||+++
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~---~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD---NPKIETSHMDGTNR 158 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS---SCEEEEEETTSCCC
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC---CcEEEEecCCCCCc
Confidence 999999999999999999999999999999999988888899999999999999999998854 37899999999999
Q ss_pred EEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEECC
Q psy5806 865 AVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKY 943 (1332)
Q Consensus 865 ~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~~~ 943 (1332)
+.++.. +.+|+||++|..+ ++|||+|.+.++|++++++|..++++...+.+|++|++++++|||+||..++|++++|.
T Consensus 159 ~~i~~~~~~~P~glaiD~~~-~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~ 237 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (263)
T ss_dssp EEEECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred eeeeeecccccceEEEeecC-cEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECC
Confidence 999876 9999999999999 99999999999999999999999998888999999999999999999999999999999
Q ss_pred CCeEE
Q psy5806 944 DVKDI 948 (1332)
Q Consensus 944 ~g~~i 948 (1332)
+|+.+
T Consensus 238 ~g~~~ 242 (263)
T d1npea_ 238 ISKEM 242 (263)
T ss_dssp TTEEE
T ss_pred CCccc
Confidence 99433
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=8.6e-18 Score=186.47 Aligned_cols=242 Identities=20% Similarity=0.319 Sum_probs=190.1
Q ss_pred CCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceE
Q psy5806 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQ 632 (1332)
Q Consensus 553 ~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~ 632 (1332)
..|++||+|+. |.+|+++.+...+|.+...++..+..+....+..|.||++|.. ++|||+|...+.|.. .-+++.+
T Consensus 14 ~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~-~~~~~~~- 89 (260)
T d1rwia_ 14 LSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTL-AAGSNNQ- 89 (260)
T ss_dssp CCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEEE-CTTCSCC-
T ss_pred CCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-CCEEEeeeeeceeee-eeeccce-
Confidence 47999999975 9999999887789999999998887777777889999999974 679999876443321 1111000
Q ss_pred EEEeecceEEEeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEe
Q psy5806 633 TLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLV 712 (1332)
Q Consensus 633 ~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~ 712 (1332)
T Consensus 90 -------------------------------------------------------------------------------- 89 (260)
T d1rwia_ 90 -------------------------------------------------------------------------------- 89 (260)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecC
Q psy5806 713 SQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAI 792 (1332)
Q Consensus 713 s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~ 792 (1332)
.+.+...+..|.+|++|.. +.|||+|.....+.++..++.....+...++..|.||++|..
T Consensus 90 ------------------~~~~~~~~~~p~~iavd~~-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~ 150 (260)
T d1rwia_ 90 ------------------TVLPFDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 150 (260)
T ss_dssp ------------------EECCCCSCCSEEEEEECTT-CCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTT
T ss_pred ------------------eeeeeeeeeeccccccccc-ceeEeeccccccccccccccceeeeeeecccCCcceeeecCC
Confidence 0011112345677888874 689999999999999988887666555677899999999975
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-c
Q psy5806 793 GRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-V 871 (1332)
Q Consensus 793 ~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l 871 (1332)
+ +||++|....+|.+.+.+|..+.++....+..|.+|++|+. |.|||+++..+ +|.+...+|.....+... +
T Consensus 151 g-~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~-----~i~~~~~~~~~~~~~~~~~~ 223 (260)
T d1rwia_ 151 G-NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTN-----QVVKLLAGSTTSTVLPFTGL 223 (260)
T ss_dssp C-CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETTTT-----EEEEECTTCSCCEECCCCSC
T ss_pred C-CEeeeccccccccccccccceeeeeeccccCCCccceeeee-eeeeeeecCCC-----EEEEEeCCCCeEEEEccCCC
Confidence 4 69999999999999999999888776677889999999986 89999998765 899999998887776555 8
Q ss_pred ccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCc
Q psy5806 872 IWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGR 906 (1332)
Q Consensus 872 ~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~ 906 (1332)
..|.||++|..+ +||++|...++|.+++..+..
T Consensus 224 ~~P~~i~~d~~g--~l~vad~~~~rI~~i~~~~~~ 256 (260)
T d1rwia_ 224 NTPLAVAVDSDR--TVYVADRGNDRVVKLTSLEHH 256 (260)
T ss_dssp CCEEEEEECTTC--CEEEEEGGGTEEEEECCCGGG
T ss_pred CCeEEEEEeCCC--CEEEEECCCCEEEEEeCCCCc
Confidence 899999999765 799999999999999877654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=4.2e-18 Score=189.03 Aligned_cols=201 Identities=14% Similarity=0.173 Sum_probs=163.6
Q ss_pred cccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1039 LPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1039 ~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
....+...|.+|++++. +.|||+|...+.|...+ +++...+....+...|.|||+|. .++|||+|...+++.+.+.
T Consensus 51 ~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~~~--~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~ 126 (260)
T d1rwia_ 51 LPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTLAA--GSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAA 126 (260)
T ss_dssp CCCCSCCSCCCEEECTT-CCEEEEETTTEEEEECT--TCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECT
T ss_pred eccCCccCceEEEEcCC-CCEEEeeeeeceeeeee--eccceeeeeeeeeeecccccccc-cceeEeecccccccccccc
Confidence 34455667899999986 46999997776665433 24444444445567899999996 6689999999999988888
Q ss_pred CCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1119 DGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1119 dG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
++..... ...++..|++|+++| .|.||+++++. .+|.+++.+|.....+....+..|.||++|.+ +.|||+
T Consensus 127 ~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~------~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vs 198 (260)
T d1rwia_ 127 GSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDN------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVT 198 (260)
T ss_dssp TCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGG------TEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEE
T ss_pred ccceeeeeeecccCCcceeeecC-CCCEeeecccc------ccccccccccceeeeeeccccCCCccceeeee-eeeeee
Confidence 8877666 446788999999999 78899999886 78999999998887776677899999999965 689999
Q ss_pred EcCCCeEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
|..+++|.+++.+|....++.. +..|.+|++ +.++.|||+|+.+++|.+++...
T Consensus 199 d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~------d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 199 EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV------DSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEE------CTTCCEEEEEGGGTEEEEECCCG
T ss_pred ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEE------eCCCCEEEEECCCCEEEEEeCCC
Confidence 9999999999999887666544 689999999 44678999999999999998643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.69 E-value=8.4e-16 Score=175.60 Aligned_cols=200 Identities=12% Similarity=0.164 Sum_probs=153.2
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC----CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ----MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~----~~~I~v~~ldG~~ 1122 (1332)
..|++||+.+ .|||+|...++|++++.+ +.....+.......|.|||++. .++||+++.. ...|...+.++..
T Consensus 42 lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~-g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 42 LEGLNFDRQG-QLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp EEEEEECTTS-CEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cEeCEECCCC-CEEEEECCCCEEEEEECC-CCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 4689999775 599999999999999976 4444444445667899999996 5689998754 3456666666554
Q ss_pred EEEEe---cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1123 KKILV---NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1123 ~~~~~---~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
...+. .....|.+++++| .|.||+++...........|+|++.+|...+.+.. ++..|+||++|++++.||++|+
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEecc
Confidence 44322 2456799999999 78999998654222235679999999987766655 6889999999999999999999
Q ss_pred CCCeEEEEecCCC--ceEEE-----Ee---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1200 TNKRIEYCDFFGR--SRKIV-----IS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1200 ~~~~I~~~d~dG~--~~~~~-----~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
..++|.++++++. ..... .. ...|.||++ |.+|+||++++..++|.++++. |
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v------D~~G~l~Va~~~~g~V~~~~p~-G 258 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI------DSDDNLYVAMYGQGRVLVFNKR-G 258 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE------BTTCCEEEEEETTTEEEEECTT-S
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE------cCCCCEEEEEcCCCEEEEECCC-C
Confidence 9999999998643 21111 11 456999999 6788999999999999999974 5
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.62 E-value=5e-14 Score=157.33 Aligned_cols=233 Identities=16% Similarity=0.225 Sum_probs=181.2
Q ss_pred CCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEe-----CCCCCceEEEEecCCCeEEEEecCCCCceEEEcC
Q psy5806 509 TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFW-----QNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM 583 (1332)
Q Consensus 509 ~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~-----~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~ 583 (1332)
+..|.|||||. .++||++|...++|.+.+.+|+..+.+-. .....|.++++++..+..+|+..+...+|.+...
T Consensus 22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 66899999997 67899999999999999999987665532 2345799999999999999988777789999999
Q ss_pred CCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCCcCc
Q psy5806 584 DGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKT 663 (1332)
Q Consensus 584 dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q~~~ 663 (1332)
+|.....+-...+..|.++++|. ++++|+++...+.+...+.+|+....+
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~~----------------------------- 150 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKF----------------------------- 150 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEE-----------------------------
T ss_pred cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccCCceeecc-----------------------------
Confidence 99987777667788999999996 557999988777666655554321111
Q ss_pred CCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeE
Q psy5806 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVAS 743 (1332)
Q Consensus 664 ~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~ 743 (1332)
... ..+..+..
T Consensus 151 ----------------------------------------------------------g~~-----------~~~~~~~~ 161 (279)
T d1q7fa_ 151 ----------------------------------------------------------GCS-----------KHLEFPNG 161 (279)
T ss_dssp ----------------------------------------------------------ECT-----------TTCSSEEE
T ss_pred ----------------------------------------------------------ccc-----------ccccccce
Confidence 000 12333556
Q ss_pred EeecCCCceEEEEecCCCceEEEecCCCCceEEEeC-CCCCccceeEecCCCeEEEEeCC-CCeEEEEeCCCCceEEEEe
Q psy5806 744 VDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN-DLNRTESIAVDAIGRKIYWTDMN-AQTIMVSDIDGKNAKVLFW 821 (1332)
Q Consensus 744 id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~-~~~~p~glAvD~~~~nLYwtD~~-~~~I~v~~ldG~~~~~l~~ 821 (1332)
+++|.. +.+|++|...+.|++++.+|....++-.. .+..|.|||+|..+ +||++|.. ..+|.+.+.+|+...++..
T Consensus 162 i~~d~~-g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~G~~~~~~~~ 239 (279)
T d1q7fa_ 162 VVVNDK-QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALES 239 (279)
T ss_dssp EEECSS-SEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEE
T ss_pred eeeccc-eeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEECCCCCEEEEEeC
Confidence 677754 68999999999999999998776665433 36789999999876 59999975 4579999999998777653
Q ss_pred -cCCCCCeEEEEeCCCCeEEEEec
Q psy5806 822 -LNLYRPRSIVVHYGLGLMVWADW 844 (1332)
Q Consensus 822 -~~~~~P~~Iavdp~~g~lywtd~ 844 (1332)
.....|.+||++|. |.||++++
T Consensus 240 ~~~~~~p~~vav~~d-G~l~V~~~ 262 (279)
T d1q7fa_ 240 KVKHAQCFDVALMDD-GSVVLASK 262 (279)
T ss_dssp SSCCSCEEEEEEETT-TEEEEEET
T ss_pred CCCCCCEeEEEEeCC-CcEEEEeC
Confidence 23457999999997 99999985
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.62 E-value=1.7e-14 Score=163.97 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=163.0
Q ss_pred CCccceEEEEEeCCCcEEEEEeCC-------CCeEEEEECCCCCCceeEee----cCCCCceeeEEEecCCeEEEEcCCC
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMR-------SGNLRTFDMSDSTRIKPIPL----MNDTIRDNFVIDWVANNIYYIDSQM 1110 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~-------~~~I~~~~l~~g~~~~~i~~----~~~~~p~glAvDw~~~~LY~td~~~ 1110 (1332)
.++..+.+++||+++ .||+++.. .++|+++++.+ .....+.. ...+.|.||++|..++.||+++..
T Consensus 15 ~~~~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~-~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~- 91 (314)
T d1pjxa_ 15 EDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR- 91 (314)
T ss_dssp CCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-
T ss_pred cCCCCCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCC-CcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-
Confidence 456678899999865 69998754 36799999763 23333221 123469999999888899999875
Q ss_pred ceEEEEeeCCceEEEEec-----CCCCceEEEEcCCCcEEEEEecCCCC---------CCCCCcEEEEecCCCceEEEEe
Q psy5806 1111 HTINVARSDGQHKKILVN-----DLMEPLAIAVYPRRGLLFYSHWGLYD---------NSPTTKIEKVYLDGSYRTVLVE 1176 (1332)
Q Consensus 1111 ~~I~v~~ldG~~~~~~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~---------~~~~~~I~r~~ldG~~~~~l~~ 1176 (1332)
+.|.+++.+|....++.. .+..|.+|++|| .|.||+|+..... ....++|+|++.+|+.... .
T Consensus 92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~--~ 168 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV--D 168 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE--E
T ss_pred CeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeEe--e
Confidence 478889999887665322 245699999999 6999999854210 1234689999999965433 3
Q ss_pred cCCCCcceEEEecCCC----EEEEEEcCCCeEEEEecCCC----ceEEEEe-----ecccceEEEecCCccccccEEEEE
Q psy5806 1177 EDLAFPNELAIDFKQR----RLFWADSTNKRIEYCDFFGR----SRKIVIS-----KVAPYGLSVRQSPGKAFIVELYWT 1243 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~~~----~LY~~d~~~~~I~~~d~dG~----~~~~~~~-----~~~P~glav~~~~~~~~~~~lYwt 1243 (1332)
..+..||||+++++++ +||++|+.+++|+++++++. +++++.. ...|.||++ |.+|+||++
T Consensus 169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav------D~~GnlyVa 242 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF------DEDNNLLVA 242 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE------BTTCCEEEE
T ss_pred CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE------ecCCcEEEE
Confidence 4688999999988654 79999999999999988643 2444443 346999999 678899999
Q ss_pred ECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEE
Q psy5806 1244 DWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIK 1278 (1332)
Q Consensus 1244 d~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 1278 (1332)
++..++|.++++.++ .....+......+..+.
T Consensus 243 ~~~~g~I~~~dp~~g---~~~~~i~~p~~~~t~~a 274 (314)
T d1pjxa_ 243 NWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp EETTTEEEEECTTCB---SCSEEEECSSSCEEEEE
T ss_pred EcCCCEEEEEeCCCC---EEEEEEECCCCCEEEEE
Confidence 999999999998877 44455554445565553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.58 E-value=2.5e-13 Score=151.51 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=144.6
Q ss_pred EeecCCCceEEE-EecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE-e
Q psy5806 744 VDVDTKNEYIYW-SDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF-W 821 (1332)
Q Consensus 744 id~d~~~~~lYw-sD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~-~ 821 (1332)
++++...+..+| .+...+.|.+.+.+|.....+-...+..|.++|+|..+ ++|+++....++.+.+.+|+....+- .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~~~~~g~~ 153 (279)
T d1q7fa_ 75 VAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFGCS 153 (279)
T ss_dssp EEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEEECT
T ss_pred ccccccccccceeccCCccccccccccccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCceeeccccc
Confidence 344444444444 34455677777778776666655667889999999655 69999999999999999998766553 3
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc--cccCceeEEeCCCCCeEEEEeCCC-CeEE
Q psy5806 822 LNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE--VIWPSCLAIDYSDNPKLYWVDTSK-HTIE 898 (1332)
Q Consensus 822 ~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~--l~~P~gl~iD~~~~~~lYw~d~~~-~~I~ 898 (1332)
..+..|.+|++++. |.+|++++..+ +|.+.+.+|+....+... +..|.||++|.++ +||++|... .+|.
T Consensus 154 ~~~~~~~~i~~d~~-g~i~v~d~~~~-----~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G--~i~Vad~~~~~~v~ 225 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDK-QEIFISDNRAH-----CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG--EILIADNHNNFNLT 225 (279)
T ss_dssp TTCSSEEEEEECSS-SEEEEEEGGGT-----EEEEEETTCCEEEEESCTTTSCSEEEEEECTTC--CEEEEECSSSCEEE
T ss_pred ccccccceeeeccc-eeEEeeecccc-----ceeeeecCCceeeeecccccccCCcccccccCC--eEEEEECCCCcEEE
Confidence 45678999999976 89999998655 899999999877666543 8889999999987 799999754 5799
Q ss_pred EEccCCCceeEEec--cCCcceEEEEe-CCEEEEEeCCCCEEEE
Q psy5806 899 YKTLATGRAKRAYA--VQSHPYTLTVL-DYYVYWTDVQHSKIYR 939 (1332)
Q Consensus 899 ~~~~dG~~~~~l~~--~~~~P~~la~~-~~~iywtD~~~~~i~~ 939 (1332)
.++.+|.....+.. ....|.+||+. +++||++++ +++|..
T Consensus 226 ~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~-n~~v~~ 268 (279)
T d1q7fa_ 226 IFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-DYRLYI 268 (279)
T ss_dssp EECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-TTEEEE
T ss_pred EECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeC-CCeEEE
Confidence 99999987777754 45689999998 569999995 566654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.52 E-value=2.3e-13 Score=154.55 Aligned_cols=219 Identities=19% Similarity=0.105 Sum_probs=156.0
Q ss_pred cceEEEEeCCCCCCCCccccc--CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec----CCCCceee
Q psy5806 1021 FGVIRRISLDTADLLPVTLPF--PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM----NDTIRDNF 1094 (1332)
Q Consensus 1021 ~~~i~~i~l~~~~~~~~~~pi--~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~----~~~~p~gl 1094 (1332)
+. |.+++.+.........|- .....|.+|++++..++||+++.. +.|.+++.+ +...+++... .+..|.+|
T Consensus 46 g~-I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~-g~~~~~~~~~~~g~~~~~pndl 122 (314)
T d1pjxa_ 46 GE-ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC 122 (314)
T ss_dssp CE-EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred CE-EEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-CeEEEEeCC-CcEEEEEeccccccccCCCcEE
Confidence 45 778877654332222221 112348899999999999999854 569999966 4433332221 13368999
Q ss_pred EEEecCCeEEEEcCC---------------CceEEEEeeCCceEEEEecCCCCceEEEEcCCC----cEEEEEecCCCCC
Q psy5806 1095 VIDWVANNIYYIDSQ---------------MHTINVARSDGQHKKILVNDLMEPLAIAVYPRR----GLLFYSHWGLYDN 1155 (1332)
Q Consensus 1095 AvDw~~~~LY~td~~---------------~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~----g~Lywtd~~~~~~ 1155 (1332)
++|. .++||++|.. .++|.+++.+|+...+. .++..|++|+++|.. .+||+++...
T Consensus 123 ~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~--- 197 (314)
T d1pjxa_ 123 AFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPT--- 197 (314)
T ss_dssp EECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTT---
T ss_pred EECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecc---
Confidence 9995 5799999854 23677778888765544 567899999998753 2799999876
Q ss_pred CCCCcEEEEecCCCce----EEEEe---cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceE
Q psy5806 1156 SPTTKIEKVYLDGSYR----TVLVE---EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGL 1226 (1332)
Q Consensus 1156 ~~~~~I~r~~ldG~~~----~~l~~---~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~gl 1226 (1332)
.+|+|.++++... +++.. .....|.||++|.+ ++||+++...++|.++|.+|......+. ...|.++
T Consensus 198 ---~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~ 273 (314)
T d1pjxa_ 198 ---KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL 273 (314)
T ss_dssp ---TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred ---cceEEeeccCccccceeeEEEEccccccccceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEE
Confidence 7899988765432 22222 12346999999954 6799999999999999999776544444 6789999
Q ss_pred EEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1227 SVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1227 av~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
++ .+.++.||+|+..+++|++++..
T Consensus 274 af-----g~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 274 HF-----KPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EE-----CTTSSEEEEEETTTTEEEEEECS
T ss_pred EE-----eCCCCEEEEEECCCCcEEEEECC
Confidence 99 34456799999999999999964
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.50 E-value=9.6e-13 Score=149.76 Aligned_cols=204 Identities=13% Similarity=0.149 Sum_probs=158.2
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCC----CCeEEEEeCCCCce
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMN----AQTIMVSDIDGKNA 816 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~----~~~I~v~~ldG~~~ 816 (1332)
..++++|.. +.|||+|...++|+|++++|.....++......|.|||++..+ +||+++.. ...|...+.++...
T Consensus 42 lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 42 LEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp EEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCcee
Confidence 467889965 6799999999999999999887777776677789999999765 69999754 34577777776655
Q ss_pred EEEEe--cCCCCCeEEEEeCCCCeEEEEecccCcC-CCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCC
Q psy5806 817 KVLFW--LNLYRPRSIVVHYGLGLMVWADWSRTRL-TNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTS 893 (1332)
Q Consensus 817 ~~l~~--~~~~~P~~Iavdp~~g~lywtd~g~~~~-~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~ 893 (1332)
..++. .....|.++++++. |.||+++...... ....+.|...||...+.+...+..|+||++|.++ +.||++|..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg-~~lyvad~~ 197 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE-KVLWVTETT 197 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS-SEEEEEEGG
T ss_pred eeeccCCCcccCCcceeEEec-cceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecccc-ceEEEeccc
Confidence 55442 23467999999987 8999998754311 1346889999998877777778999999999999 899999999
Q ss_pred CCeEEEEccCCC--ceeEEe-------ccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEE
Q psy5806 894 KHTIEYKTLATG--RAKRAY-------AVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIV 949 (1332)
Q Consensus 894 ~~~I~~~~~dG~--~~~~l~-------~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~ 949 (1332)
.++|.++++++. ...... .....|.|++++ +++||++++..++|.++++ .|+.+.
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~ 262 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG 262 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence 999999988643 222111 134569999998 6799999999999999997 464443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=9.6e-12 Score=139.55 Aligned_cols=211 Identities=10% Similarity=0.082 Sum_probs=153.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV 1127 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~ 1127 (1332)
.|..||+.++.|||+|+..++|+++++.++ .. .+.. --..|.+||.+. .+.|+++.. +.|.+++.++...+.+.
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g-~~-~~~~-~~~~~~~i~~~~-dg~l~va~~--~gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASG-RK-TVHA-LPFMGSALAKIS-DSKQLIASD--DGLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTT-EE-EEEE-CSSCEEEEEEEE-TTEEEEEET--TEEEEEETTTCCEEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCC-eE-EEEE-CCCCcEEEEEec-CCCEEEEEe--CccEEeecccceeeEEe
Confidence 577899999999999999999999997743 22 2332 234688999985 567777763 46888888754444432
Q ss_pred c-----CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1128 N-----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1128 ~-----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
. ....|+++++|| +|.||+++...........++|.. +|+ .+.+. .++..|||++++++++.|||+|+..+
T Consensus 95 ~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~-~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~ 170 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGK-VTKLF-ADISIPNSICFSPDGTTGYFVDTKVN 170 (295)
T ss_dssp CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTE-EEEEE-EEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCc-EEEEe-eccCCcceeeecCCCceEEEeecccc
Confidence 1 234689999999 789999976432122345677764 443 33333 46889999999999999999999999
Q ss_pred eEEEEecCCC------ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCC
Q psy5806 1203 RIEYCDFFGR------SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQE 1272 (1332)
Q Consensus 1203 ~I~~~d~dG~------~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~ 1272 (1332)
+|.++++|+. .+...+. ...|+||++ |.+|+||++.|..+.|.++++. | +....+..-.+
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v------D~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~ 240 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC------DAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGK 240 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE------CTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCS
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEE------cCCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCC
Confidence 9999999753 2444443 567999999 6788999999999999999975 4 45555554445
Q ss_pred CeeeEE
Q psy5806 1273 DFLNIK 1278 (1332)
Q Consensus 1273 ~~~~i~ 1278 (1332)
++..+.
T Consensus 241 ~~T~~~ 246 (295)
T d2ghsa1 241 QTTCPA 246 (295)
T ss_dssp BEEEEE
T ss_pred ceEEEE
Confidence 555543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.38 E-value=2.4e-11 Score=136.83 Aligned_cols=192 Identities=9% Similarity=-0.008 Sum_probs=147.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC---ce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG---QH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG---~~ 1122 (1332)
.+.++++++.+ +||+++...++|++++.+ |. ........+.|.+||++.. ++||+++...+.+.++++++ ..
T Consensus 29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~-g~--~~~~~~~~~~~~gla~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 29 FLENLASAPDG-TIFVTNHEVGEIVSITPD-GN--QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp CEEEEEECTTS-CEEEEETTTTEEEEECTT-CC--EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCC-CEEEEeCCCCEEEEEeCC-CC--EEEEEcCCCCcceEEEcCC-CCeEEEecCCceEEEEEecccccce
Confidence 46789999874 699999999999999854 43 3333355678999999975 56999998888877777653 33
Q ss_pred EEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe----------cCCCCcceEEEecCC
Q psy5806 1123 KKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE----------EDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1123 ~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~----------~~l~~p~glaiD~~~ 1191 (1332)
..+ -......|.+|++++ .|.+|+++... .+|++.++++....+... .....|+||+.| +
T Consensus 104 ~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~ 174 (302)
T d2p4oa1 104 ETLLTLPDAIFLNGITPLS-DTQYLTADSYR------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--G 174 (302)
T ss_dssp EEEEECTTCSCEEEEEESS-SSEEEEEETTT------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred eeccccCCccccceeEEcc-CCCEEeecccc------ccceeeeccCCcceeEecCCccceeeccCccccccccccc--C
Confidence 333 223556799999999 78999999776 789999998876554432 123468898887 6
Q ss_pred CEEEEEEcCCCeEEEEecCCCc----eEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRS----RKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~----~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.||+++...++|.+++.++.. .........|.||++ +.+|.||++++..++|.+++..+
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~------d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAF------DVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEE------BTTCCEEEECBTTCCEEEECTTC
T ss_pred CceeeecCCCCeEEeccccccccccccccccCCCCCcceEE------CCCCCEEEEEcCCCcEEEECCCC
Confidence 7999999999999999998653 233333788999999 56778999999999999998754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.31 E-value=4.1e-09 Score=116.25 Aligned_cols=276 Identities=13% Similarity=0.106 Sum_probs=192.3
Q ss_pred eEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEecc
Q psy5806 886 KLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAA 963 (1332)
Q Consensus 886 ~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~ 963 (1332)
-+|++++..+.|...|++............+|.++++. +.+||.+....++|...+..+++.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---------------- 66 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------- 66 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----------------
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce----------------
Confidence 58889888889998887654332222334678888886 457888887777776543222110
Q ss_pred ccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC
Q psy5806 964 QNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE 1043 (1332)
Q Consensus 964 ~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~ 1043 (1332)
++.+. .
T Consensus 67 ------------------------------------------------------------~~~~~--------------~ 72 (301)
T d1l0qa2 67 ------------------------------------------------------------IATVP--------------A 72 (301)
T ss_dssp ------------------------------------------------------------EEEEE--------------C
T ss_pred ------------------------------------------------------------eeeee--------------c
Confidence 11111 1
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
...+.++++++.++.+|++....+.+...++.++.....+ .....|..+++++.++.++++......+.+.+......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T d1l0qa2 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccccccccccccccccccccceeeecccccceeeeec--cccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence 1235677778888888888777777877776543322222 34457889999999999999988888888888775444
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--C
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--N 1201 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~ 1201 (1332)
.........|..++++|..+.+|++..+. ..+................ -..|.+++++++++.+|++... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 151 INTVSVGRSPKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred eeecccCCCceEEEeeccccceeeecccc------cccccccccceeeeecccc-cCCcceeecccccccccccccccee
Confidence 33334457899999999999999998665 4565666655554444443 3678999999999999998654 4
Q ss_pred CeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1202 KRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+.|...|+........+. ...|.+|++ ++++.+||++.+..++|..+|..++ +.+..+.
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~~~~~va~-----spdg~~l~va~~~~~~i~v~D~~t~---~~~~~~~ 283 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGPDPAGIAV-----TPDGKKVYVALSFCNTVSVIDTATN---TITATMA 283 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCSSEEEEEE-----CTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE
T ss_pred eeeeeeecCCCeEEEEEcCCCCEEEEEE-----eCCCCEEEEEECCCCeEEEEECCCC---eEEEEEe
Confidence 679998885443333334 788999999 5667889999999999999999888 5555554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.30 E-value=4.5e-10 Score=126.09 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=164.8
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCC
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATG 905 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~ 905 (1332)
-|.+||++|. |.||+++...+ +|.|...+|+. +.+......|+||+++.++ +||+++...+.|..+++.+.
T Consensus 29 ~~e~iAv~pd-G~l~vt~~~~~-----~I~~i~p~g~~-~~~~~~~~~~~gla~~~dG--~l~v~~~~~~~~~~~~~~~~ 99 (302)
T d2p4oa1 29 FLENLASAPD-GTIFVTNHEVG-----EIVSITPDGNQ-QIHATVEGKVSGLAFTSNG--DLVATGWNADSIPVVSLVKS 99 (302)
T ss_dssp CEEEEEECTT-SCEEEEETTTT-----EEEEECTTCCE-EEEEECSSEEEEEEECTTS--CEEEEEECTTSCEEEEEECT
T ss_pred CcCCEEECCC-CCEEEEeCCCC-----EEEEEeCCCCE-EEEEcCCCCcceEEEcCCC--CeEEEecCCceEEEEEeccc
Confidence 4889999997 99999997654 89999999874 4444447789999999977 79999988888887776543
Q ss_pred c--eeEEe--ccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCc
Q psy5806 906 R--AKRAY--AVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCS 980 (1332)
Q Consensus 906 ~--~~~l~--~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCs 980 (1332)
. ...+. .....|.++++. ++.+|.++...+.+++.+...+...
T Consensus 100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~-------------------------------- 147 (302)
T d2p4oa1 100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS-------------------------------- 147 (302)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE--------------------------------
T ss_pred ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcce--------------------------------
Confidence 2 22222 256778899987 6799999999999887654433100
Q ss_pred cccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEE
Q psy5806 981 HLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIY 1060 (1332)
Q Consensus 981 hlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY 1060 (1332)
++..... + . . .........+.+|.++ ++.+|
T Consensus 148 -----------------------------------~~~~~~~------~--~--~--~~~~~~~~~~ngi~~~--~~~l~ 178 (302)
T d2p4oa1 148 -----------------------------------IWLEHPM------L--A--R--SNSESVFPAANGLKRF--GNFLY 178 (302)
T ss_dssp -----------------------------------EEEECGG------G--S--C--SSTTCCSCSEEEEEEE--TTEEE
T ss_pred -----------------------------------eEecCCc------c--c--e--eeccCccccccccccc--CCcee
Confidence 0000000 0 0 0 0001122345677666 46899
Q ss_pred EEeCCCCeEEEEECCCCCCc-eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE--EecCCCCceEEE
Q psy5806 1061 FADMRSGNLRTFDMSDSTRI-KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI--LVNDLMEPLAIA 1137 (1332)
Q Consensus 1061 ~sd~~~~~I~~~~l~~g~~~-~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~--~~~~~~~P~~ia 1137 (1332)
+++...++|++++++..... ..........|.|||+|. .++||+++...++|.+++.+|+...+ +..++..|.++|
T Consensus 179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~va 257 (302)
T d2p4oa1 179 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVA 257 (302)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEE
T ss_pred eecCCCCeEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEE
Confidence 99999999999997742221 112223456899999996 56799999888999999999987655 345778899999
Q ss_pred E---cCCCcEEEEEecC
Q psy5806 1138 V---YPRRGLLFYSHWG 1151 (1332)
Q Consensus 1138 v---dp~~g~Lywtd~~ 1151 (1332)
+ .+..+.||++..+
T Consensus 258 fg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 258 FGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EcCCCCCCCEEEEECCC
Confidence 9 4556789998754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.28 E-value=9.3e-09 Score=113.27 Aligned_cols=287 Identities=13% Similarity=0.092 Sum_probs=187.5
Q ss_pred CeEEEEecccCcCCCCceEEEecCCCCcEEEe--cccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccC
Q psy5806 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE--TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ 914 (1332)
Q Consensus 837 g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~--~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~ 914 (1332)
-|+|+++.+.+ +|...+++-. +++. ..-..|.++++++++ ++||++....++|...|+............
T Consensus 2 ~~~yV~~~~~~-----~v~v~D~~t~--~~~~~i~~g~~p~~va~spdG-~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~ 73 (301)
T d1l0qa2 2 TFAYIANSESD-----NISVIDVTSN--KVTATIPVGSNPMGAVISPDG-TKVYVANAHSNDVSIIDTATNNVIATVPAG 73 (301)
T ss_dssp EEEEEEETTTT-----EEEEEETTTT--EEEEEEECSSSEEEEEECTTS-SEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred eEEEEEECCCC-----EEEEEECCCC--eEEEEEECCCCceEEEEeCCC-CEEEEEECCCCEEEEEECCCCceeeeeecc
Confidence 37899876544 6777665422 2222 224568999999999 899999988899999998654332222334
Q ss_pred CcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccc
Q psy5806 915 SHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTC 992 (1332)
Q Consensus 915 ~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C 992 (1332)
..|.++++. +.++|.+......+...+..+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 108 (301)
T d1l0qa2 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV--------------------------------------------- 108 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---------------------------------------------
T ss_pred ccccccccccccccccccccccceeeeccccccee---------------------------------------------
Confidence 567776665 234444444443333211111100
Q ss_pred cCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEE
Q psy5806 993 ACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTF 1072 (1332)
Q Consensus 993 ~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~ 1072 (1332)
+..+ .....+..+.+++.++.++.+......+...
T Consensus 109 -------------------------------~~~~--------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~ 143 (301)
T d1l0qa2 109 -------------------------------AGTV--------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (301)
T ss_dssp -------------------------------EEEE--------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -------------------------------eeec--------------cccccceEEEeecCCCeeeeeeccccceeee
Confidence 1111 1112245566777777777777666777777
Q ss_pred ECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCC
Q psy5806 1073 DMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1073 ~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
+...+..... ......|..+++...++.+|++......+.+.................|.++++++....+|++..+.
T Consensus 144 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~ 221 (301)
T d1l0qa2 144 NTVTKAVINT--VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221 (301)
T ss_dssp ETTTTEEEEE--EECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred eccccceeee--cccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccc
Confidence 6543222222 23455789999999999999999888888777777655444333446899999999999999987654
Q ss_pred CCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEE
Q psy5806 1153 YDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1153 ~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav 1228 (1332)
....|...++........+..+ ..|.+|++++++++||++....++|...|+........+. +..|.++..
T Consensus 222 ----~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg~~P~~~g~ 293 (301)
T d1l0qa2 222 ----YFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293 (301)
T ss_dssp ----SCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSS
T ss_pred ----eeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCCCCCcEeEE
Confidence 2357888887654444444433 6799999999999999999999999999986443333344 677877643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1e-08 Score=114.90 Aligned_cols=304 Identities=11% Similarity=0.083 Sum_probs=196.9
Q ss_pred ceEEEEecCCCceEEEecCCCCceEEEe--CCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCce--EEE-EecCCC
Q psy5806 751 EYIYWSDISEKTIERVRFDMTGRERLVV--NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNA--KVL-FWLNLY 825 (1332)
Q Consensus 751 ~~lYwsD~~~~~I~r~~~~g~~~~~vi~--~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~--~~l-~~~~~~ 825 (1332)
..+|++...++.|+..+++.....+++. ..-..|.+||+.+.++.||.+....++|.+.+++.... +.. ....-.
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence 5789999999999998886544323222 22367999999999999999999899999988864322 222 222335
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEec---ccccCceeEEeCCCCCeEEEEeCCCCeEEEEcc
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET---EVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~---~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~ 902 (1332)
.|.+|+++|...+||+++++.. +|.....+......... ....|.++.++..+ +.+|+.+.....|...+.
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAG-----NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTV 157 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTT-----EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEE
T ss_pred CceEEEEcCCCCEEeecccCCC-----ceeeeccccccceecccccCCCccceEEEeeecc-eeeeccccccceeeEEEe
Confidence 7999999999888999986544 56665555444333222 26678899999999 999999988888887776
Q ss_pred CCCceeEEe-------ccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCccc
Q psy5806 903 ATGRAKRAY-------AVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACG 973 (1332)
Q Consensus 903 dG~~~~~l~-------~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~ 973 (1332)
......... .....|..+++. +..+|++....+...... .. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~--------------------~~-~~~------ 210 (333)
T d1ri6a_ 158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE--------------------LK-DPH------ 210 (333)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE--------------------SS-CTT------
T ss_pred ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe--------------------ec-ccc------
Confidence 543322211 145667777775 446666665555433211 00 000
Q ss_pred CCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEe
Q psy5806 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYH 1053 (1332)
Q Consensus 974 ~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d 1053 (1332)
..+.. ...+...+. .......+.+++++
T Consensus 211 --------------------------------------~~~~~-------~~~~~~~~~-------~~~~~~~~~~~~~s 238 (333)
T d1ri6a_ 211 --------------------------------------GNIEC-------VQTLDMMPE-------NFSDTRWAADIHIT 238 (333)
T ss_dssp --------------------------------------SCCEE-------EEEEECSCT-------TCCSCCCEEEEEEC
T ss_pred --------------------------------------cceee-------eeeeeeeec-------CCCccccceeEEEe
Confidence 00000 000111001 11223346778889
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCCCCceeEe--ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc---eEEE--E
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDSTRIKPIP--LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ---HKKI--L 1126 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~--~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~---~~~~--~ 1126 (1332)
+.++.+|.+....+.+..+.++..+....+. ......|.+||+++.++.||+++...+.|.++++|.+ ...+ +
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 239 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred cccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEec
Confidence 9999999998888877776655433332222 1234579999999999999999988889999887643 2222 4
Q ss_pred ecCCCCceEEEEcC
Q psy5806 1127 VNDLMEPLAIAVYP 1140 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp 1140 (1332)
..+ ..|..|+|+.
T Consensus 319 ~~g-~~p~~v~~~~ 331 (333)
T d1ri6a_ 319 AVG-QGPMWVVVNA 331 (333)
T ss_dssp ECS-SSCCEEEEEE
T ss_pred cCC-CCCcEEEEEc
Confidence 444 4699998864
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.9e-12 Score=93.40 Aligned_cols=38 Identities=45% Similarity=0.987 Sum_probs=36.0
Q ss_pred CCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 57 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
++|++++|+|.+|.||+..|+|||..||.|||||.+|+
T Consensus 1 rtC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~Cp 38 (39)
T d2fcwb1 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP 38 (39)
T ss_dssp CCCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred CcCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcCCC
Confidence 36899999999999999999999999999999999986
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=5.6e-12 Score=93.54 Aligned_cols=39 Identities=33% Similarity=0.808 Sum_probs=35.3
Q ss_pred ccCCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.++|.++||+|.. +++|||..|+|||..||.|||||.+|
T Consensus 2 s~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C 41 (41)
T d1f5ya2 2 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41 (41)
T ss_dssp TTTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred ccccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence 3689999999963 57899999999999999999999987
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.8e-12 Score=90.86 Aligned_cols=36 Identities=39% Similarity=0.834 Sum_probs=34.8
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.+++|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 2 sC~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d1f8za_ 2 TCRPDEFQCS-DGNCIHGSRQCDREYDCKDMSDEVGC 37 (39)
T ss_dssp CCCTTEEECS-SSCEEETTTSSSCCCCSTTSGGGSSS
T ss_pred CCCCCceEeC-CCCeEChhhcCCCCCcCCCCchhccC
Confidence 6999999998 89999999999999999999999998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=6.4e-08 Score=108.20 Aligned_cols=303 Identities=10% Similarity=0.053 Sum_probs=185.1
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCce-EEE-EecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCc-EEEec
Q psy5806 793 GRKIYWTDMNAQTIMVSDIDGKNA-KVL-FWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR-AVFET 869 (1332)
Q Consensus 793 ~~nLYwtD~~~~~I~v~~ldG~~~-~~l-~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~-~~l~~ 869 (1332)
-+++|++.+..++|.+.+++.... +.+ ....-..|++||++|...+||.+..... .|....++.... ..+..
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~-----~i~~~~i~~~~~~~~~~~ 77 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF-----RVLAYRIAPDDGALTFAA 77 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTT-----EEEEEEECTTTCCEEEEE
T ss_pred ceEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCC-----eEEEEEEeCCCCcEEEee
Confidence 357999999999999999864322 222 1122367999999999778999875433 687777775433 23332
Q ss_pred c---cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec---cCCcceEEEEe--CCEEEEEeCCCCEEEEEE
Q psy5806 870 E---VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA---VQSHPYTLTVL--DYYVYWTDVQHSKIYRAN 941 (1332)
Q Consensus 870 ~---l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~---~~~~P~~la~~--~~~iywtD~~~~~i~~~~ 941 (1332)
. ...|.+|+++.++ +.||+++.....|...+.+......... ....|.++++. +.++|+.+.....|...+
T Consensus 78 ~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~ 156 (333)
T d1ri6a_ 78 ESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156 (333)
T ss_dssp EEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ecccCCCceEEEEcCCC-CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence 2 4569999999999 9999999888888777665544333322 33445555443 557777776666554322
Q ss_pred CCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeec
Q psy5806 942 KYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRF 1021 (1332)
Q Consensus 942 ~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~ 1021 (1332)
.... ...+.. .
T Consensus 157 ~~~~------------------------------------------------------------------~~~~~~-~-- 167 (333)
T d1ri6a_ 157 VSDD------------------------------------------------------------------GHLVAQ-D-- 167 (333)
T ss_dssp ECTT------------------------------------------------------------------SCEEEE-E--
T ss_pred eccC------------------------------------------------------------------Ccceee-e--
Confidence 1100 000000 0
Q ss_pred ceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce----eEee-----cCCCCce
Q psy5806 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK----PIPL-----MNDTIRD 1092 (1332)
Q Consensus 1022 ~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~----~i~~-----~~~~~p~ 1092 (1332)
..... ......|..++|++.+..+|++....+.+............ .+.. .....|.
T Consensus 168 --~~~~~------------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (333)
T d1ri6a_ 168 --PAEVT------------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 233 (333)
T ss_dssp --EEEEE------------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred --ceeee------------eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccce
Confidence 00000 01123356777888888888887776665555543211111 1110 1234678
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeC--CceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSD--GQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ld--G~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
++++++.++.+|.+....+.+.++.++ +..... .......|++||++|...+||+++... ..=+|++++...
T Consensus 234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~----~~v~v~~id~~t 309 (333)
T d1ri6a_ 234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS----HHISVYEIVGEQ 309 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT----CEEEEEEEETTT
T ss_pred eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC----CeEEEEEEECCC
Confidence 899999999999999888888888776 333332 223346899999999888899997554 112355555533
Q ss_pred CceEEE--EecCCCCcceEEEec
Q psy5806 1169 SYRTVL--VEEDLAFPNELAIDF 1189 (1332)
Q Consensus 1169 ~~~~~l--~~~~l~~p~glaiD~ 1189 (1332)
...+.+ +..+ ..|..++|..
T Consensus 310 G~l~~~~~~~~g-~~p~~v~~~~ 331 (333)
T d1ri6a_ 310 GLLHEKGRYAVG-QGPMWVVVNA 331 (333)
T ss_dssp TEEEEEEEEECS-SSCCEEEEEE
T ss_pred CcEEEEEeccCC-CCCcEEEEEc
Confidence 222222 4433 4699998863
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-11 Score=90.54 Aligned_cols=37 Identities=41% Similarity=0.853 Sum_probs=35.4
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
+|.+++|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus 2 sC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C~ 38 (39)
T d1f8za_ 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 38 (39)
T ss_dssp CCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred CCCCCceEeCCCCeEChhhcCCCCCcCCCCchhccCc
Confidence 6899999999999999999999999999999999985
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-11 Score=91.05 Aligned_cols=37 Identities=35% Similarity=0.733 Sum_probs=35.1
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.+|.+++|+|. +|.|||..|+|||..||.|||||.+|
T Consensus 1 rtC~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d2fcwb1 1 KTCSQAEFRCH-DGKCISRQFVCDSDRDCLDGSDEASC 37 (39)
T ss_dssp CCCCTTEEECT-TSCEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred CcCCCCCEEcC-CCCEEcchhcCcCcCcCcCCchhcCC
Confidence 36999999998 89999999999999999999999998
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-11 Score=89.62 Aligned_cols=36 Identities=33% Similarity=0.735 Sum_probs=34.3
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.|.++||+|. ++.||+..|+|||..||.|||||.+|
T Consensus 1 PC~~~~f~C~-~g~Ci~~~~~CDg~~DC~dgsDE~~C 36 (37)
T d1ajja_ 1 PCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCCTTCEECT-TSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCCceEcC-CCCEECchhcCCCCCcCCCCchhhcc
Confidence 4899999998 89999999999999999999999998
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.6e-11 Score=91.66 Aligned_cols=38 Identities=34% Similarity=0.767 Sum_probs=35.8
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
..|.++||+|.++++|||..|+|||..||.|||||.+|
T Consensus 2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C 39 (42)
T d1cr8a_ 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccC
Confidence 46999999997678999999999999999999999999
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.5e-11 Score=88.82 Aligned_cols=37 Identities=49% Similarity=1.079 Sum_probs=34.7
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
.|.+++|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus 1 PC~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~Cs 37 (37)
T d1ajja_ 1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCCceEcCCCCEECchhcCCCCCcCCCCchhhccC
Confidence 3888999999999999999999999999999999883
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=99.06 E-value=1.3e-11 Score=91.72 Aligned_cols=37 Identities=32% Similarity=0.685 Sum_probs=34.4
Q ss_pred CCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.++||+|.+ +++|||..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C 39 (41)
T d2gtlo2 2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39 (41)
T ss_dssp SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccC
Confidence 69999999963 57899999999999999999999998
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.6e-11 Score=89.87 Aligned_cols=37 Identities=46% Similarity=0.901 Sum_probs=34.5
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
++|+++||+|. +|.|||..|+|||..||.|||||..+
T Consensus 1 ~tC~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~~ 37 (39)
T d2fcwb2 1 LTCGPASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQ 37 (39)
T ss_dssp HHCCTTEEECT-TSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred CccCCCceEcC-CCCeEChhhcCCCCCCCCCCCcCCCC
Confidence 57999999998 89999999999999999999999764
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.8e-11 Score=89.62 Aligned_cols=40 Identities=43% Similarity=0.992 Sum_probs=36.4
Q ss_pred CCCCCCCCEEec-CCCEEEeeeecCCCCCCCCCCCcccccc
Q psy5806 56 PKKCSPDEHRCT-TGHCILKTWLCDGIPDCSLGEDERNCNK 95 (1332)
Q Consensus 56 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 95 (1332)
|..|.+++|+|. +++||+..|+|||..||.|||||.+|+.
T Consensus 1 P~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~~ 41 (42)
T d1cr8a_ 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CCCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCCC
Confidence 357999999996 6899999999999999999999999964
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.4e-11 Score=88.65 Aligned_cols=37 Identities=38% Similarity=0.991 Sum_probs=34.0
Q ss_pred CCCCCCCEEec--CCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 57 KKCSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 57 ~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
.+|++++|+|. +++|||..|+|||..||.|||||.+|
T Consensus 3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C 41 (41)
T d1f5ya2 3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41 (41)
T ss_dssp TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence 47899999996 56899999999999999999999987
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.5e-11 Score=90.40 Aligned_cols=38 Identities=29% Similarity=0.606 Sum_probs=35.5
Q ss_pred ccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 12 YLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 12 ~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.-+|.+++|+|. +++|||.+|+|||..||.|||||.+|
T Consensus 5 ~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~c 42 (44)
T d1f5ya1 5 GDRCERNEFQCQ-DGKCISYKWVCDGSAECQDGSDESQE 42 (44)
T ss_dssp CCCCCSSSEECS-SSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred CCccCCCCeEcC-CCCeEChhHcCCCcCcCCCCCcCCCC
Confidence 347999999998 79999999999999999999999988
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=2.6e-11 Score=88.90 Aligned_cols=36 Identities=42% Similarity=0.948 Sum_probs=32.9
Q ss_pred CCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 15 EIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 15 c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
|.++||+|.+ ..+|||..|+|||..||.|||||.+|
T Consensus 1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C 37 (39)
T d1v9u5_ 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred CCCCceECCCCCCCeeechhcCcCcccCCCCchhccC
Confidence 7899999973 24699999999999999999999999
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=99.01 E-value=3.5e-11 Score=89.29 Aligned_cols=38 Identities=45% Similarity=1.063 Sum_probs=34.8
Q ss_pred CCCCCCCEEec--CCCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 57 KKCSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 57 ~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
++|.+++|+|. +++||+..|+|||..||+|||||.+|.
T Consensus 1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~ 40 (41)
T d2gtlo2 1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 40 (41)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred CCCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence 36899999996 579999999999999999999999984
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.99 E-value=2.7e-08 Score=110.77 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=140.1
Q ss_pred eEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEe
Q psy5806 742 ASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFW 821 (1332)
Q Consensus 742 ~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~ 821 (1332)
.+.-||..++.|||+|...++|+|.++++...+.+... ..|.+++.+..+ +|+++.. +.|.+.++++...+.+..
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~--~~~~~i~~~~dg-~l~va~~--~gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP--FMGSALAKISDS-KQLIASD--DGLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS--SCEEEEEEEETT-EEEEEET--TEEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC--CCcEEEEEecCC-CEEEEEe--CccEEeecccceeeEEee
Confidence 45569999999999999999999999887665544322 357889998654 5777753 568888887555555542
Q ss_pred c----CCCCCeEEEEeCCCCeEEEEecccCcC-CCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCe
Q psy5806 822 L----NLYRPRSIVVHYGLGLMVWADWSRTRL-TNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHT 896 (1332)
Q Consensus 822 ~----~~~~P~~Iavdp~~g~lywtd~g~~~~-~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~ 896 (1332)
. ....|.++++||. |.+|+++...... ....+.+.. +|+ ...+...+..|||++++..+ +.|||+|...+.
T Consensus 96 ~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~-~g~-~~~~~~~~~~~Ng~~~s~d~-~~l~~~dt~~~~ 171 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIPNSICFSPDG-TTGYFVDTKVNR 171 (295)
T ss_dssp SSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSEEEEEECTTS-CEEEEEETTTCE
T ss_pred eecCCCcccceeeEECCC-CCEEEEeccccccccceeEeeec-CCc-EEEEeeccCCcceeeecCCC-ceEEEeecccce
Confidence 1 1235889999987 8999987643311 112344442 343 23444458889999999999 999999999999
Q ss_pred EEEEccCCCc------eeEEec---cCCcceEEEEe-CCEEEEEeCCCCEEEEEECC
Q psy5806 897 IEYKTLATGR------AKRAYA---VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKY 943 (1332)
Q Consensus 897 I~~~~~dG~~------~~~l~~---~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~ 943 (1332)
|+++++++.. +..+.. ....|.|++++ +++||.+.|..++|.+.++.
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 9999987532 223222 34579999998 66999999999999999974
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=7.7e-11 Score=89.11 Aligned_cols=38 Identities=37% Similarity=0.964 Sum_probs=35.9
Q ss_pred CCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 56 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
...|.+++|+|.+|+|||..|+|||..||.|||||.+|
T Consensus 5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c 42 (44)
T d1f5ya1 5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42 (44)
T ss_dssp CCCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred CCccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCC
Confidence 45799999999999999999999999999999999887
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.4e-11 Score=92.01 Aligned_cols=40 Identities=53% Similarity=1.091 Sum_probs=36.7
Q ss_pred CCcccCCCCCCccccccCCC------CccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~------~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
-|.|+.+||||+|+|+++|. +|+|+||.||+|..|+++|+
T Consensus 4 cneC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 4 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred ccccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 57899999999999998773 69999999999999999997
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5e-11 Score=90.17 Aligned_cols=39 Identities=38% Similarity=0.784 Sum_probs=36.3
Q ss_pred cccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 11 GYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 11 ~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+..+|.+++|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 1 G~~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~c 39 (44)
T d1j8ea_ 1 GSHSCSSTQFKCN-SGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp CCSSSCTTEEECT-TSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCccCCCCcEEcC-CCCEEChhhcCcCcccCCCCCcCCCC
Confidence 3468999999998 89999999999999999999999987
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.5e-11 Score=85.93 Aligned_cols=36 Identities=39% Similarity=0.961 Sum_probs=33.6
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
+|++++|+|.+|.||+..|+|||..||.|||||..+
T Consensus 2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~ 37 (39)
T d2fcwb2 2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37 (39)
T ss_dssp HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCCC
Confidence 488899999999999999999999999999999764
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1e-10 Score=88.44 Aligned_cols=37 Identities=38% Similarity=0.932 Sum_probs=35.4
Q ss_pred CCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 57 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
..|++++|+|.+|.||+..|+|||..||.|||||.+|
T Consensus 3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c 39 (44)
T d1j8ea_ 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCCC
Confidence 5789999999999999999999999999999999987
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.96 E-value=1.5e-10 Score=85.55 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=33.4
Q ss_pred CCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|+++||+|.+ ++.|||..|+|||+.||.|||||..+
T Consensus 1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~ 38 (41)
T d2gtln2 1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38 (41)
T ss_dssp SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred CCCCCeeECCCcCCCeechHHcCCCCccCCCCCccccc
Confidence 59999999963 57999999999999999999999754
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.2e-10 Score=88.23 Aligned_cols=38 Identities=39% Similarity=0.942 Sum_probs=35.7
Q ss_pred CCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 56 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
+..|++++|+|.+|+||+..|+|||..||.|||||..|
T Consensus 3 p~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~ 40 (45)
T d1d2la_ 3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence 56799999999999999999999999999999999875
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.7e-10 Score=87.32 Aligned_cols=37 Identities=32% Similarity=0.671 Sum_probs=34.9
Q ss_pred cCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 13 LQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 13 ~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
.+|+++||+|. +++|||..|+|||..||.|||||..|
T Consensus 4 ~~C~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~~ 40 (45)
T d1d2la_ 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp CBTTBTCEEET-TTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CcCCCCCeEcC-CCCeEChhhhCcCcCcCCCCCCCCcC
Confidence 57999999998 89999999999999999999999876
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Probab=98.95 E-value=9e-11 Score=87.77 Aligned_cols=37 Identities=38% Similarity=0.932 Sum_probs=33.4
Q ss_pred CCCCCceecCC----CCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNR----TGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~----~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.+.||+|.+ +++|||.+|+|||..||.|||||.+|
T Consensus 1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C 41 (42)
T d1k7ba_ 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41 (42)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence 58999999963 34799999999999999999999988
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=6.6e-11 Score=86.77 Aligned_cols=36 Identities=47% Similarity=1.059 Sum_probs=33.1
Q ss_pred CCCCCEEecCC--CEEEeeeecCCCCCCCCCCCccccc
Q psy5806 59 CSPDEHRCTTG--HCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 59 C~~~~f~C~~g--~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
|.+++|+|.+| +|||..|+|||..||+|||||.+|.
T Consensus 1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~ 38 (39)
T d1v9u5_ 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence 67899999875 5999999999999999999999985
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=1.8e-10 Score=89.49 Aligned_cols=40 Identities=45% Similarity=0.938 Sum_probs=36.2
Q ss_pred CCCcCCCCCCccccccCCC-----CCceeeCCCCccccCCCCccc
Q psy5806 664 HPCNENNGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTCS 703 (1332)
Q Consensus 664 ~pC~~~nggCs~lCl~~~~-----~~~~C~Cp~g~~l~~d~~tC~ 703 (1332)
+.|..+||||+|+||++|. .+|+|+||.||+|.+|+++|+
T Consensus 5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 5688899999999998873 489999999999999999997
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.4e-10 Score=85.47 Aligned_cols=39 Identities=44% Similarity=0.981 Sum_probs=36.7
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|+|+.+||+|+|+|+++|++|+|+||.||+|. |+++|+
T Consensus 2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence 699999999999999999999999999999995 889985
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.9e-10 Score=84.79 Aligned_cols=38 Identities=32% Similarity=0.755 Sum_probs=35.1
Q ss_pred ccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+.|||+ |++|+|+|++.+++|+|+|++||+|. |+++|+
T Consensus 1 G~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 1 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp CSCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred CcccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence 468998 89999999999999999999999996 889995
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.90 E-value=1e-06 Score=100.83 Aligned_cols=270 Identities=9% Similarity=-0.005 Sum_probs=162.5
Q ss_pred CCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecC
Q psy5806 781 LNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860 (1332)
Q Consensus 781 ~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~d 860 (1332)
-..|..||++..++.||.++...-.....+.++..........-..|..+++++....+|++..... ..++......
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~---~~~v~~~~~~ 115 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQP---PYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSST---TCCEEEEEES
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCC---CCEEEEeEcc
Confidence 4457889999999999999765434444444555443333223357999999999777888764322 1344443222
Q ss_pred --CCCcE------------EEec----ccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe------ccCCc
Q psy5806 861 --GTNRA------------VFET----EVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY------AVQSH 916 (1332)
Q Consensus 861 --G~~~~------------~l~~----~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~------~~~~~ 916 (1332)
|..-. .... ....|.++++++++ ++||++|.+.++|..++.+........ .....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g 194 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence 11111 1111 12346799999999 999999999999988876543322211 14578
Q ss_pred ceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccC
Q psy5806 917 PYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCAC 994 (1332)
Q Consensus 917 P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~C 994 (1332)
|..+++. +.++|.+....++|...+...++ .
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~--------------------~--------------------------- 227 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPAT--------------------H--------------------------- 227 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTT--------------------C---------------------------
T ss_pred eEEEEECCCCceEEEeccCCCEEEEEEecCCC--------------------c---------------------------
Confidence 9999997 45899998888887643321110 0
Q ss_pred CCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCc-ccccCCccceEEEEEeCCCcEEEEEeCCCC-----e
Q psy5806 995 PTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPV-TLPFPEYMSSIFFDYHYSKNLIYFADMRSG-----N 1068 (1332)
Q Consensus 995 p~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~-~~pi~~~~~~~~id~d~~~~~lY~sd~~~~-----~ 1068 (1332)
+.... +..+++........ .........+.+|.+++.++.||+++...+ .
T Consensus 228 --------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~ 283 (365)
T d1jofa_ 228 --------------------MPVYT----HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY 283 (365)
T ss_dssp --------------------CEEEE----EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred --------------------eEEEE----eeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence 00000 11112111111000 001123345678889999999999975433 3
Q ss_pred EEEEECCCCCCcee---Ee--ecCCCCceeeEEEe-cCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1069 LRTFDMSDSTRIKP---IP--LMNDTIRDNFVIDW-VANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~---i~--~~~~~~p~glAvDw-~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
|..++++..+.... +. ......|.+|++++ .++.||+++...+.|.++++++.....
T Consensus 284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~ 346 (365)
T d1jofa_ 284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHR 346 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEE
T ss_pred EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcE
Confidence 66555442222211 11 12345899999986 678899999999999999998775444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.90 E-value=5.3e-08 Score=111.95 Aligned_cols=158 Identities=16% Similarity=0.076 Sum_probs=113.7
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCC--ceEEE--Ee--cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDG--QHKKI--LV--NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG--~~~~~--~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r 1163 (1332)
.|.++++++.++.||++|.+.++|.+++.+. ..... +. ..-..|++|+++|...++|+++... +.|..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~------~~V~v 219 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG------NRICE 219 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT------TEEEE
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCC------CEEEE
Confidence 6789999999999999999999999888763 32222 11 1236899999999988999999776 78888
Q ss_pred EecCCCceEEEEec-------------------CCCCcceEEEecCCCEEEEEEcCCCe-----EEEEecC--CCce-EE
Q psy5806 1164 VYLDGSYRTVLVEE-------------------DLAFPNELAIDFKQRRLFWADSTNKR-----IEYCDFF--GRSR-KI 1216 (1332)
Q Consensus 1164 ~~ldG~~~~~l~~~-------------------~l~~p~glaiD~~~~~LY~~d~~~~~-----I~~~d~d--G~~~-~~ 1216 (1332)
.+++......+... ....|..|+++++++.||++....+. |..+..+ |.-. ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~ 299 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence 88877653322110 01236689999999999999875444 6665554 4322 22
Q ss_pred E-Ee----ecccceEEEecCCccc-cccEEEEEECCCCEEEEEEecCC
Q psy5806 1217 V-IS----KVAPYGLSVRQSPGKA-FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1217 ~-~~----~~~P~glav~~~~~~~-~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
. .. +.+|.+|++ ++ .+.+||+++..++.|..++....
T Consensus 300 ~~~~~~~~G~~p~~i~~-----~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 300 FLSPTPTSGGHSNAVSP-----CPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSCCTTCCCEEE-----CTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EeeEEEcCCCCccEEEe-----cCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 2 21 789999999 32 46889999999998887765443
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Probab=98.89 E-value=2.4e-10 Score=85.37 Aligned_cols=37 Identities=49% Similarity=1.269 Sum_probs=33.0
Q ss_pred CCCCCCEEecC-----CCEEEeeeecCCCCCCCCCCCccccc
Q psy5806 58 KCSPDEHRCTT-----GHCILKTWLCDGIPDCSLGEDERNCN 94 (1332)
Q Consensus 58 ~C~~~~f~C~~-----g~Ci~~~~~CDg~~DC~DgsDE~~C~ 94 (1332)
+|.+++|+|.+ ++|||..|+|||..||+|||||.+|.
T Consensus 1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~CG 42 (42)
T d1k7ba_ 1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 42 (42)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhccC
Confidence 47889999964 47999999999999999999999984
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=3e-10 Score=84.63 Aligned_cols=39 Identities=33% Similarity=0.934 Sum_probs=36.4
Q ss_pred cccCC-CCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|||+ +++|+|+|++.+++|+|.|+.||+|.+|+++|++
T Consensus 1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a 40 (41)
T d1i0ua2 1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40 (41)
T ss_dssp CCTTTTTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred CccCCCCCCCCCEeECCCCCEEeECCCCCeECCCCCcccc
Confidence 47898 7899999999999999999999999999999964
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.7e-10 Score=84.04 Aligned_cols=38 Identities=32% Similarity=0.684 Sum_probs=35.2
Q ss_pred ccCC---CCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 394 SHCA---PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 394 n~C~---~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
|||+ +++|+|+|++.+++|+|+||.||+|.+|+++|++
T Consensus 1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~ 41 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41 (42)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence 6786 5789999999999999999999999999999964
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=8.1e-10 Score=82.89 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=32.9
Q ss_pred ccCCC-CCceecCCCCceEeCCcCcCCCCCCCCCCCCCC
Q psy5806 12 YLQEI-PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMK 49 (1332)
Q Consensus 12 ~~~c~-~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~ 49 (1332)
+-+|. +.+|+|. +|+|||..|+|||..||.|||||..
T Consensus 3 ~~~C~~~~~f~C~-~g~CI~~~~~CDg~~DC~DgsDE~~ 40 (44)
T d1xfea2 3 VTLCEGPNKFKCH-SGECITLDKVCNMARDCRDWSDEPI 40 (44)
T ss_dssp CSSCCSTTEEECT-TSCEEESTTTTCSSCCCSSCSSSCT
T ss_pred cCcCCCCCeEECC-CCCeEchhhcCCCCCCCCCCCccCc
Confidence 34575 6999998 8999999999999999999999964
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.85 E-value=5.2e-10 Score=83.16 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=32.3
Q ss_pred CCCCCceecCC-CCceEeCCcCcCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNR-TGACIPAQWQCDNEFDCEMGEDEMK 49 (1332)
Q Consensus 14 ~c~~~~f~C~~-~~~Ci~~~~~CDg~~DC~dgsDE~~ 49 (1332)
.|.++||+|.+ +++|||..|+|||+.||.|||||..
T Consensus 2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~ 38 (42)
T d2gtlm2 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 38 (42)
T ss_dssp CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence 58999999973 4789999999999999999999954
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.5e-10 Score=87.88 Aligned_cols=39 Identities=36% Similarity=0.846 Sum_probs=37.0
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
|+.+||||+|+|++++++|+|.|+.||+|.+|+++|++.
T Consensus 2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~ 40 (50)
T d1autl2 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 40 (50)
T ss_dssp SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEEC
T ss_pred CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCccccC
Confidence 888999999999999999999999999999999999854
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.1e-10 Score=87.85 Aligned_cols=39 Identities=31% Similarity=0.698 Sum_probs=36.6
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
|+.+||||+|+|++.++..|+|+|+.||+|.+|++||.+
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~ 40 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence 888999999999999886789999999999999999985
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.2e-10 Score=87.80 Aligned_cols=40 Identities=35% Similarity=0.749 Sum_probs=36.6
Q ss_pred cccCCCCCCccccccCCCC-ccccCCCCeeEccCCcccccc
Q psy5806 971 ACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 971 ~C~~~nGgCshlCl~~p~~-~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
.|+.+||||+|+|++++++ |+|+||.||.|..|+++|.+.
T Consensus 1 ~C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~ 41 (53)
T d2bz6l1 1 ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41 (53)
T ss_dssp CTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred CCCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCC
Confidence 3889999999999999986 889999999999999999853
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.79 E-value=8.8e-10 Score=86.17 Aligned_cols=39 Identities=36% Similarity=0.983 Sum_probs=36.9
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
|+.+||||+|+|++++++|+|+|+.||.|..|+++|++.
T Consensus 1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~ 39 (51)
T d1kigl_ 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEEC
T ss_pred CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccC
Confidence 788999999999999999999999999999999999854
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.6e-10 Score=87.12 Aligned_cols=40 Identities=25% Similarity=0.833 Sum_probs=37.7
Q ss_pred cccCCCCCCccccccCCCCccccCCCCeeEccCCcccccc
Q psy5806 971 ACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 971 ~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
-|+.+||||+|+|+++|++|+|.||.||.|..|++||.+.
T Consensus 2 ~C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~ 41 (51)
T d2p3ua1 2 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 41 (51)
T ss_dssp GGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred ccCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccC
Confidence 4889999999999999999999999999999999999864
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.4e-09 Score=81.66 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=32.0
Q ss_pred CCC-CCCEEecCCCEEEeeeecCCCCCCCCCCCccc
Q psy5806 58 KCS-PDEHRCTTGHCILKTWLCDGIPDCSLGEDERN 92 (1332)
Q Consensus 58 ~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~ 92 (1332)
.|. +.+|+|.+|+||+..|+|||..||+|||||..
T Consensus 5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~ 40 (44)
T d1xfea2 5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI 40 (44)
T ss_dssp SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSCT
T ss_pred cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccCc
Confidence 464 68999999999999999999999999999953
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.77 E-value=1.5e-09 Score=80.58 Aligned_cols=35 Identities=37% Similarity=0.807 Sum_probs=31.8
Q ss_pred CCCCCCEEecC--CCEEEeeeecCCCCCCCCCCCccc
Q psy5806 58 KCSPDEHRCTT--GHCILKTWLCDGIPDCSLGEDERN 92 (1332)
Q Consensus 58 ~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~ 92 (1332)
.|++++|+|.+ ++|||..|+|||..||+|||||..
T Consensus 2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~ 38 (42)
T d2gtlm2 2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 38 (42)
T ss_dssp CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence 58899999974 689999999999999999999954
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=9e-10 Score=87.86 Aligned_cols=39 Identities=31% Similarity=0.851 Sum_probs=37.0
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
|+.+||||+|+|++.+..+++|+|+.||+|.+|+++|.+
T Consensus 3 C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~ 41 (57)
T d1rfnb_ 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 41 (57)
T ss_dssp TTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred cCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence 888999999999999877899999999999999999996
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=9.3e-10 Score=87.78 Aligned_cols=40 Identities=28% Similarity=0.804 Sum_probs=36.6
Q ss_pred cccCCCCCCccccccCCC-CccccCCCCeeEccCCcccccc
Q psy5806 971 ACGSNNGGCSHLCLRNPT-NFTCACPTGILLSADRRSCFSR 1010 (1332)
Q Consensus 971 ~C~~~nGgCshlCl~~p~-~~~C~Cp~g~~l~~d~~tC~~~ 1010 (1332)
-|+.+||||+|+|+++++ +|+|+|+.||.|..|+++|.+.
T Consensus 2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~ 42 (57)
T d1rfnb_ 2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 42 (57)
T ss_dssp CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEEC
T ss_pred ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccC
Confidence 388999999999999987 6899999999999999999964
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.76 E-value=1.7e-09 Score=79.84 Aligned_cols=36 Identities=31% Similarity=0.684 Sum_probs=32.3
Q ss_pred CCCCCCEEec--CCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 58 KCSPDEHRCT--TGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 58 ~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
.|++++|+|. +|.|||..|+|||..||+|||||..+
T Consensus 1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~ 38 (41)
T d2gtln2 1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38 (41)
T ss_dssp SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred CCCCCeeECCCcCCCeechHHcCCCCccCCCCCccccc
Confidence 3788999996 47899999999999999999999654
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.7e-09 Score=83.92 Aligned_cols=38 Identities=39% Similarity=0.864 Sum_probs=36.2
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcccc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
|+.+||||+|+|+.+++ +|+|+|+.||+|.+|++||.+
T Consensus 2 C~~~NGgC~~~C~~~~g-~~~C~C~~Gy~L~~D~~tC~~ 39 (50)
T d1autl2 2 CSLDNGGCTHYCLEEVG-WRRCSCAPGYKLGDDLLQCHP 39 (50)
T ss_dssp SSSGGGGCSSEEEECSS-SEEEECCTTEEECTTSSCEEE
T ss_pred CCCCCCCcccEeecCCC-CeEEECCCCCEECCCCCcccc
Confidence 78899999999999997 999999999999999999985
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.6e-09 Score=80.57 Aligned_cols=40 Identities=30% Similarity=0.704 Sum_probs=36.6
Q ss_pred CcccC-CCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 970 NACGS-NNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 970 n~C~~-~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
|+|+. +|++|+|+|++++++|+|.||.||.|..|++||..
T Consensus 1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~ 41 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41 (42)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence 57874 67999999999999999999999999999999974
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.1e-09 Score=83.86 Aligned_cols=40 Identities=25% Similarity=0.751 Sum_probs=37.0
Q ss_pred CCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccC
Q psy5806 665 PCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705 (1332)
Q Consensus 665 pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~ 705 (1332)
-|+.+||||+|+|+..++ +++|+|+.||+|.+|++||.+.
T Consensus 2 ~C~~~NGgC~h~C~n~~g-~~~C~C~~Gy~L~~D~~tC~~~ 41 (51)
T d2p3ua1 2 LCSLDNGDCDQFCHEEQN-SVVCSCARGYTLADNGKACIPT 41 (51)
T ss_dssp GGGTGGGGCSSEEEEETT-EEEEECCTTEEECTTSSCEEES
T ss_pred ccCCCCCCcccEeecCCC-CeEeEcCCCCEECCCCCccccC
Confidence 388899999999999998 9999999999999999999863
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.65 E-value=3.8e-09 Score=82.50 Aligned_cols=39 Identities=33% Similarity=0.947 Sum_probs=36.3
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccC
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~ 705 (1332)
|..+||+|+|+|+..++ +|+|+|+.||+|++|++||.+.
T Consensus 1 C~~~NGgC~h~C~~~~~-~~~C~C~~Gy~L~~D~~tC~~~ 39 (51)
T d1kigl_ 1 CSLDNGGCDQFCREERS-EVRCSCAHGYVLGDDSKSCVST 39 (51)
T ss_dssp CCTTTTSSSSCCCEETT-EECCCCCTTEEECTTSSCEEEC
T ss_pred CCCCCCCcccEeEcCCC-cEEeEcCCCCEECCCCCccccC
Confidence 77899999999999987 9999999999999999999853
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=3.3e-09 Score=80.75 Aligned_cols=39 Identities=26% Similarity=0.692 Sum_probs=33.8
Q ss_pred cccCC--CC---cceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCA--PK---VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~--~g---~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
+|+|+ ++ .|+|+|+|.+++|+|+|++||+|.+|+++|..
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~ 44 (45)
T d1nt0a3 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA 44 (45)
T ss_dssp CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence 47887 44 49999999999999999999999999999963
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8e-09 Score=76.75 Aligned_cols=39 Identities=26% Similarity=0.778 Sum_probs=36.1
Q ss_pred CcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 970 n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
|+|+. +++|+|+|.+++++|+|.||.||.|..|+++|++
T Consensus 2 dEC~~-~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a 40 (41)
T d1i0ua2 2 DECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40 (41)
T ss_dssp CTTTT-TTSCSSCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred ccCCC-CCCCCCEeECCCCCEEeECCCCCeECCCCCcccc
Confidence 78974 7899999999999999999999999999999974
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.2e-09 Score=79.68 Aligned_cols=39 Identities=33% Similarity=0.839 Sum_probs=34.8
Q ss_pred cccCC--CC---cceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCA--PK---VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~--~g---~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
+|||+ ++ +|+|+|+|++++|+|.|+.||+|..|+++|.+
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence 47887 33 69999999999999999999999999999963
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.55 E-value=8.8e-06 Score=91.51 Aligned_cols=191 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred ceEEEEEeCCCcEEEEEeC------------CCCeEEEEECCCCCCcee--EeecC-----CCCceeeEEEec--C-CeE
Q psy5806 1046 SSIFFDYHYSKNLIYFADM------------RSGNLRTFDMSDSTRIKP--IPLMN-----DTIRDNFVIDWV--A-NNI 1103 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~------------~~~~I~~~~l~~g~~~~~--i~~~~-----~~~p~glAvDw~--~-~~L 1103 (1332)
.+.+|+.++ ++.+|.+.. ..|.|+.+++.+...... .+..+ .-.|.||.+-.. + ..|
T Consensus 36 G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 36 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 355666665 345555542 137788888764333221 11111 137999988321 2 258
Q ss_pred EEEcC--CCceEEEEeeCCc--eE---EEEe-cCCCCceEEEEcCCCcEEEEEecCCCCC---------CCCCcEEEEec
Q psy5806 1104 YYIDS--QMHTINVARSDGQ--HK---KILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDN---------SPTTKIEKVYL 1166 (1332)
Q Consensus 1104 Y~td~--~~~~I~v~~ldG~--~~---~~~~-~~~~~P~~iavdp~~g~Lywtd~~~~~~---------~~~~~I~r~~l 1166 (1332)
|+.+- ...+|++++++.. .. ..+. ..+..|..|++.. .|.+|+|+...+.. ...+.-.....
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 88864 5678999888632 22 1222 3457799999998 67899997432110 01123344445
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEE---Ee-ecccceEEEecCCccccccEEEE
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV---IS-KVAPYGLSVRQSPGKAFIVELYW 1242 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~---~~-~~~P~glav~~~~~~~~~~~lYw 1242 (1332)
++...+++. +++..||||+++++++.||++++..++|.++++++...... +. ...|..|.+ |..++.+|.
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~-----d~~~g~lwv 267 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISV-----DPVTGDLWV 267 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEE-----CTTTCCEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEE-----ecCCCEEEE
Confidence 666665554 47899999999999999999999999999999987643222 23 678999999 334677777
Q ss_pred EE
Q psy5806 1243 TD 1244 (1332)
Q Consensus 1243 td 1244 (1332)
+-
T Consensus 268 a~ 269 (340)
T d1v04a_ 268 GC 269 (340)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.4e-08 Score=77.23 Aligned_cols=40 Identities=30% Similarity=0.833 Sum_probs=37.1
Q ss_pred CcccCCCC---CCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 970 NACGSNNG---GCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 970 n~C~~~nG---gCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
|+|+..|| +|+|+|++++++|+|.|+.||.|..|+++|.+
T Consensus 2 dEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred cCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence 67888877 79999999999999999999999999999974
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.51 E-value=1.1e-05 Score=89.25 Aligned_cols=243 Identities=11% Similarity=0.021 Sum_probs=149.5
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC----
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN---- 1087 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~---- 1087 (1332)
.|++.++++..|.-+++....... .++++. ...|.+++|++.+++||++....+.|..+++.++.....+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~-~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDK-VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE-EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEE-EEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 456666653327777776443221 233332 34578999999999999998888999999988655443333211
Q ss_pred CCCceeeEEEecCCeEEEEcCC-----------CceEEEEeeCCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCC-
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQ-----------MHTINVARSDGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD- 1154 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~-----------~~~I~v~~ldG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~- 1154 (1332)
...+.++++.+.++.||++... ...+.+.+..... ...+. ....|.+++++|...+||.+......
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~ 159 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRDLHVM 159 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSSEEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCCccee
Confidence 2367899999999999998642 3456666666433 33343 34679999999988888876421100
Q ss_pred CCCC-CcEEEE------------------------------------------------------ecCCCc-eEEEEecC
Q psy5806 1155 NSPT-TKIEKV------------------------------------------------------YLDGSY-RTVLVEED 1178 (1332)
Q Consensus 1155 ~~~~-~~I~r~------------------------------------------------------~ldG~~-~~~l~~~~ 1178 (1332)
+... ..+.+. ++.... ........
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (337)
T d1pbyb_ 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence 0000 011111 110000 00011111
Q ss_pred CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1179 LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1179 l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
-..+..+++.++...+|..+ +.|...|+........+. ...|.+|++ ++++.+||++. ..++|..+|..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----s~dG~~l~v~~-~~~~i~v~D~~t 310 (337)
T d1pbyb_ 240 DVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPLPHSYYSVNV-----STDGSTVWLGG-ALGDLAAYDAET 310 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEECSSCCCEEEE-----CTTSCEEEEES-BSSEEEEEETTT
T ss_pred CcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEcCCCCEEEEEE-----CCCCCEEEEEe-CCCcEEEEECCC
Confidence 23345566777777777765 578888886544333334 777899999 56688899886 567899999988
Q ss_pred CCCcceEEEEec
Q psy5806 1258 DTGQWDVHLIRS 1269 (1332)
Q Consensus 1258 g~~~~~~~~~~~ 1269 (1332)
+ +.+..+..
T Consensus 311 ~---~~v~~i~~ 319 (337)
T d1pbyb_ 311 L---EKKGQVDL 319 (337)
T ss_dssp C---CEEEEEEC
T ss_pred C---cEEEEEEC
Confidence 8 66655543
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=1.2e-08 Score=77.63 Aligned_cols=40 Identities=25% Similarity=0.815 Sum_probs=33.0
Q ss_pred CcccCCCCC---CccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 970 NACGSNNGG---CSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 970 n~C~~~nGg---CshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
|+|+..|++ |+|+|.+++++|+|.|+.||.|..|+++|..
T Consensus 2 dEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~ 44 (45)
T d1nt0a3 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA 44 (45)
T ss_dssp CTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred cCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence 678888776 9999999999999999999999999999974
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.6e-08 Score=78.08 Aligned_cols=32 Identities=31% Similarity=0.779 Sum_probs=30.2
Q ss_pred cceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 400 VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 400 ~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|+|+|+|++|+|+|.|+.||+|..|+++|++
T Consensus 21 ~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~ 52 (53)
T d1apqa_ 21 QCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp TTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence 58999999999999999999999999999964
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.3e-08 Score=74.37 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=35.9
Q ss_pred ccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
++|||+ +..|+|.|+|.+++|+|.|+.||+|.+++++|.
T Consensus 2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~ 42 (43)
T d1uzka1 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42 (43)
T ss_dssp CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCccc
Confidence 468998 667899999999999999999999999999995
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=3.3e-08 Score=71.96 Aligned_cols=37 Identities=24% Similarity=0.569 Sum_probs=32.6
Q ss_pred cccCC-CCcceeeeccCCCceEEeCCCCceec-CCCCCc
Q psy5806 393 QSHCA-PKVCSHICLPNKHRFTCQCPLGLTLS-PDNKSC 429 (1332)
Q Consensus 393 ~n~C~-~g~CshlCl~~~~~~~C~C~~G~~L~-~d~~tC 429 (1332)
+|||+ +++|+|+|+|++++|+|.|+.||+|. .++++|
T Consensus 2 idEC~~~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~~~~~C 40 (40)
T d1dx5i3 2 IDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40 (40)
T ss_dssp CCHHHHCSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred ccccCCCcCccCEeeCCCCCeEeECCCCCeeCCCCCCCC
Confidence 58898 78999999999999999999999996 456665
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=8.1e-08 Score=72.01 Aligned_cols=39 Identities=31% Similarity=0.844 Sum_probs=34.9
Q ss_pred ccccCC--CCcce-eeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCA--PKVCS-HICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~--~g~Cs-hlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
++|+|+ ++.|. |.|+|.+|+|.|.|+.||+|..++++|.
T Consensus 2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce 43 (43)
T d1uzka2 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43 (43)
T ss_dssp ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred CcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence 578998 66775 8999999999999999999999999994
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.29 E-value=6.2e-05 Score=87.65 Aligned_cols=185 Identities=11% Similarity=-0.008 Sum_probs=132.1
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEe----c
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW----V 1099 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw----~ 1099 (1332)
|.-+++++. .++..++....|.+++|++.+++||.++ ..+.|..++++.+....+........|.++++.. .
T Consensus 44 v~v~D~~t~---~v~~~~~~g~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 44 IALIDGSTY---EIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119 (432)
T ss_dssp EEEEETTTC---CEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred EEEEECCCC---cEEEEEeCCCCeeEEEECCCCCEEEEEc-CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence 666666533 3344444445689999999999999987 5689999998755443322212334678887753 5
Q ss_pred CCeEEEEcCCCceEEEEeeCC-ceEEEEec-----------CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1100 ANNIYYIDSQMHTINVARSDG-QHKKILVN-----------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~ldG-~~~~~~~~-----------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
++.||++.+..+.|.+++.+. +...++.. ....+.+|+.+|....+|++.... +.|..+++.
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~------~~i~~~d~~ 193 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET------GKILLVDYT 193 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT------TEEEEEETT
T ss_pred CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC------CeEEEEEcc
Confidence 889999999899999999874 43333211 224567888999888899997655 678888876
Q ss_pred CCceEEE--EecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe
Q psy5806 1168 GSYRTVL--VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS 1219 (1332)
Q Consensus 1168 G~~~~~l--~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~ 1219 (1332)
......+ +..+ ..|.++++++++++||.+....+.|...+.+.......+.
T Consensus 194 ~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 194 DLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp CSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence 5442222 3333 5789999999999999999999999999998766555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.29 E-value=3.7e-07 Score=105.52 Aligned_cols=191 Identities=9% Similarity=-0.071 Sum_probs=126.2
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceE----------------
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTI---------------- 1113 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I---------------- 1113 (1332)
.++.+.+++||++|..+++|.+++++.+...+++.......|.|+++...++.+|++......+
T Consensus 77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~ 156 (441)
T d1qnia2 77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT 156 (441)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence 3345668899999999999999998854434444333456899999999999999986554443
Q ss_pred --EEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE-EecCCCceEEEEecCCCCcceEEEec
Q psy5806 1114 --NVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK-VYLDGSYRTVLVEEDLAFPNELAIDF 1189 (1332)
Q Consensus 1114 --~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r-~~ldG~~~~~l~~~~l~~p~glaiD~ 1189 (1332)
.+++...... ..+..+ ..|.+++++|..+++|++..+. ..+.. ..+.......+.. ..+|.++++.+
T Consensus 157 ~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~ns------e~~~~id~~t~~~~d~i~v--~n~p~~~~~~~ 227 (441)
T d1qnia2 157 MFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNS------ERAVDLAGTMRNDRDWVVV--FNVERIAAAVK 227 (441)
T ss_dssp EEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCT------TCCSSHHHHTCSSBCEEEE--EEHHHHHHHHH
T ss_pred eEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCC------CceEEEeccCcceEEEEEe--CCccceEEEec
Confidence 2233332111 112223 4799999999999999998765 11111 1222322222222 24677777777
Q ss_pred CCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1190 ~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+++.+|+. .++.+...+.........++ +..|.|+++ ++++.++|++...+++|..++..
T Consensus 228 dGk~~~v~--~~~v~vvd~~~~~~v~~~IPvgksPhGv~v-----SPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 228 AGNFKTIG--DSKVPVVDGRGESEFTRYIPVPKNPHGLNT-----SPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp TTCCBCCT--TCCCCEEECSSSCSSEEEECCBSSCCCEEE-----CTTSCEEEEECTTSSBEEEEEGG
T ss_pred CCCEEEeC--CCCcEEEEcccCCceEEEEeCCCCccCceE-----CCCCCEEEEeCCcCCcEEEEEee
Confidence 77766653 33333333334444455566 889999999 77899999999999999999953
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=9e-08 Score=71.38 Aligned_cols=38 Identities=32% Similarity=0.904 Sum_probs=34.6
Q ss_pred cccCC--CCccee-eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCA--PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~--~g~Csh-lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
+|||+ ++.|.| +|+|.+++|+|.|+.||+|.+|+++|.
T Consensus 2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv 42 (42)
T d1lmja2 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42 (42)
T ss_dssp CCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred ccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence 58887 677877 999999999999999999999999994
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.27 E-value=4.7e-05 Score=88.93 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=50.2
Q ss_pred CceEEEEcC--------CCcEEEEEecCCCCCCCCCcEEEEecCCCceEE-----EEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1132 EPLAIAVYP--------RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV-----LVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1132 ~P~~iavdp--------~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~-----l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
.|.++++.. -+|.||++++.. ..|.|+.++...... .+.....+|.+|++.+++..||+++
T Consensus 350 apsg~~fY~g~~~~fp~~~g~lfvg~l~~------~~i~~v~~~~~~~~~~~~~~~~~~~~~R~rdv~~gpDGs~lyv~~ 423 (450)
T d1crua_ 350 APSSAYVYKGGKKAITGWENTLLVPSLKR------GVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLT 423 (450)
T ss_dssp CBCCCEECCCCTTCCTTCTTEEEEEBSSS------CCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEE
T ss_pred cCccceEecCCcccCcccCCCEEEEECcC------CEEEEEEEcCCCceeeEEEEeccCCCCCceEEEECCCCCEEEEEE
Confidence 466776632 257899999886 679999997655322 2223346788999998877899999
Q ss_pred cCCCeEEE
Q psy5806 1199 STNKRIEY 1206 (1332)
Q Consensus 1199 ~~~~~I~~ 1206 (1332)
...++|++
T Consensus 424 d~~G~i~r 431 (450)
T d1crua_ 424 DTAGNVQK 431 (450)
T ss_dssp CSSCCEEC
T ss_pred CCCCCEec
Confidence 88888887
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.24 E-value=0.0032 Score=72.23 Aligned_cols=343 Identities=9% Similarity=0.011 Sum_probs=190.7
Q ss_pred CCeEEEEeCC-CCeEEEEecccCcCCCCceEEEecCC-CCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccC
Q psy5806 826 RPRSIVVHYG-LGLMVWADWSRTRLTNNRIEMAHMDG-TNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903 (1332)
Q Consensus 826 ~P~~Iavdp~-~g~lywtd~g~~~~~~~~I~r~~~dG-~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d 903 (1332)
.|..+.++.. ++.++++.... .+|...++.- +....|- ....|.++++.+++ ++||.+.. .+.|...+++
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~d-----g~v~vwD~~t~~~~~~l~-~g~~~~~vafSPDG-k~l~~~~~-d~~v~vwd~~ 91 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDA-----GQIALVDGDSKKIVKVID-TGYAVHISRMSASG-RYLLVIGR-DARIDMIDLW 91 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTT-----TEEEEEETTTCSEEEEEE-CCSSEEEEEECTTS-CEEEEEET-TSEEEEEETT
T ss_pred CCCcccccCCCCeEEEEEEcCC-----CEEEEEECCCCcEEEEEe-CCCCeeEEEECCCC-CEEEEEeC-CCCEEEEEcc
Confidence 4555444443 24566766443 4677766553 2223332 23568999999999 99998864 4688888887
Q ss_pred CCceeEEec--cCCcceEEEE------eCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCC
Q psy5806 904 TGRAKRAYA--VQSHPYTLTV------LDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSN 975 (1332)
Q Consensus 904 G~~~~~l~~--~~~~P~~la~------~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~ 975 (1332)
......+.. ....|.++++ ++.+||.+....+.+...+...+..+.. ..
T Consensus 92 t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~---------~~-------------- 148 (426)
T d1hzua2 92 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI---------VS-------------- 148 (426)
T ss_dssp SSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE---------EE--------------
T ss_pred CCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEE---------ee--------------
Confidence 655443322 3344555544 2456666665555554433332211110 00
Q ss_pred CCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCC
Q psy5806 976 NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYS 1055 (1332)
Q Consensus 976 nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~ 1055 (1332)
.....-.... +..-.....+...+.
T Consensus 149 -----------------------------------------------------~~~~~~~~~~--~~~~~~~~~i~~s~d 173 (426)
T d1hzua2 149 -----------------------------------------------------TRGMTVDTQT--YHPEPRVAAIIASHE 173 (426)
T ss_dssp -----------------------------------------------------CCEECSSSCC--EESCCCEEEEEECSS
T ss_pred -----------------------------------------------------ccCCCcccee--ecCCCceeEEEECCC
Confidence 0000000000 001112345556667
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecC-CCC-
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVND-LME- 1132 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~-~~~- 1132 (1332)
...++++....+.|..+...++....+........|.+++++..++.+|++....+.+.+.++....... +..+ ...
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
T d1hzua2 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253 (426)
T ss_dssp SSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred CCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence 7788888878888887776544433333333455799999999999999999999899888887443333 3221 111
Q ss_pred ceEEEE-cCCCcEEEEEecCCCCCCCCCcEEEEecCC--------CceEEEEecCCCCcceEEEecCCCEEEEEEcC---
Q psy5806 1133 PLAIAV-YPRRGLLFYSHWGLYDNSPTTKIEKVYLDG--------SYRTVLVEEDLAFPNELAIDFKQRRLFWADST--- 1200 (1332)
Q Consensus 1133 P~~iav-dp~~g~Lywtd~~~~~~~~~~~I~r~~ldG--------~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--- 1200 (1332)
...+.. .+..+.++.+.... ...|......- ..... +...-..|.++++.+++++|++..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~~-l~g~~~~v~~v~~sPdg~~l~v~~~~~~s 327 (426)
T d1hzua2 254 GRGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAE-LQGQGGGSLFIKTHPKSSHLYVDTTFNPD 327 (426)
T ss_dssp SCCEEEEETTTEEEEEEECTT-----TCEEEEEECCTTTCTTTBTSEEEE-EECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred cceeeeecCCCCceEEeccCC-----CceEEEeeccccccccccceEeEE-EecCCCceeEEEcCCCCceEEEeecCCCC
Confidence 122222 22233333333222 24444444322 22222 22233568899999999999875332
Q ss_pred ---CCeEEEEecC-CCceEEEEe----------ecccceEEEecCCccccccEEEEEEC----CCCEEEEEEecCCCCcc
Q psy5806 1201 ---NKRIEYCDFF-GRSRKIVIS----------KVAPYGLSVRQSPGKAFIVELYWTDW----EAMSVVIAREKSDTGQW 1262 (1332)
Q Consensus 1201 ---~~~I~~~d~d-G~~~~~~~~----------~~~P~glav~~~~~~~~~~~lYwtd~----~~~~V~~~~~~~g~~~~ 1262 (1332)
.+.|...|.. |.....+.. ......+++ ++++.+||++-| ..+.|...|..|+ +
T Consensus 328 ~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f-----SpDGk~i~vs~~~~~~~~~~i~v~D~~T~---k 399 (426)
T d1hzua2 328 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY-----NKRGDEVWFSVWNGKNDSSALVVVDDKTL---K 399 (426)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE-----CSSSSEEEEEECCCTTSCCEEEEEETTTT---E
T ss_pred cccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEE-----CCCCCEEEEEEecCCCCCCeEEEEECCCC---e
Confidence 3568888875 444333432 122345566 456778999876 4677999998887 5
Q ss_pred eEEEEe
Q psy5806 1263 DVHLIR 1268 (1332)
Q Consensus 1263 ~~~~~~ 1268 (1332)
...++.
T Consensus 400 ~~~~i~ 405 (426)
T d1hzua2 400 LKAVVK 405 (426)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 544444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.24 E-value=0.00011 Score=85.36 Aligned_cols=187 Identities=9% Similarity=-0.052 Sum_probs=136.0
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE--EecCCCCc
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI--LVNDLMEP 1133 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~--~~~~~~~P 1133 (1332)
+.++++....++|..+++..+.-...+- .+ ..|.++++.+.++.||+++. .+.|.+++++ ++...+ +.. ...|
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~-~~~~ 107 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKI-GSEA 107 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEec-CCCC
Confidence 4566788888899999977443333332 33 47999999999999999875 4689999987 443222 433 3578
Q ss_pred eEEEEcC----CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----------CCCCcceEEEecCCCEEEEEE
Q psy5806 1134 LAIAVYP----RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----------DLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1134 ~~iavdp----~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----------~l~~p~glaiD~~~~~LY~~d 1198 (1332)
++++++| ...+||.+.... +.|...+.........+.. .-..+.+++.+++++++|++-
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCeEEecccCCCCCEEEEEcCCC------CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 9998876 345789988765 6677777766554443321 113455688899999999999
Q ss_pred cCCCeEEEEecCCCc-eE-EEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1199 STNKRIEYCDFFGRS-RK-IVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~-~~-~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...+.|..+++.... .+ .-+. ...|.++++ ++++.++|++....+.|..++..++
T Consensus 182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~-----spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGL-----DGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE-----CTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ccCCeEEEEEccCCCcceEEEEcccCccccceE-----CCCCCEEEEeccccceEEEeecccc
Confidence 999999999986543 22 2234 778999999 6677889999999999999998776
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.9e-07 Score=70.15 Aligned_cols=40 Identities=28% Similarity=0.645 Sum_probs=38.0
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|+|+..+++|+|.|++++++|.|.|+.||+|..++++|+
T Consensus 3 idEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~ 42 (43)
T d1uzka1 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42 (43)
T ss_dssp CCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred ccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCccc
Confidence 5899999999999999999999999999999999999997
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.04 E-value=0.00063 Score=75.89 Aligned_cols=146 Identities=8% Similarity=0.056 Sum_probs=99.9
Q ss_pred ceEEEEEeCC---CcEEEEEeC--CCCeEEEEECCCCCCcee----EeecCCCCceeeEEEecCCeEEEEcCC-------
Q psy5806 1046 SSIFFDYHYS---KNLIYFADM--RSGNLRTFDMSDSTRIKP----IPLMNDTIRDNFVIDWVANNIYYIDSQ------- 1109 (1332)
Q Consensus 1046 ~~~~id~d~~---~~~lY~sd~--~~~~I~~~~l~~g~~~~~----i~~~~~~~p~glAvDw~~~~LY~td~~------- 1109 (1332)
+|.||++-.. ..+||+++- ...+|..+.+..++...+ +.......|..|++.. .+.+|+|+..
T Consensus 98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~ 176 (340)
T d1v04a_ 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 176 (340)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHH
T ss_pred eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhh
Confidence 5899987432 237888874 334554444432332222 2223456899999984 6789999632
Q ss_pred --------CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe--cCC
Q psy5806 1110 --------MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE--EDL 1179 (1332)
Q Consensus 1110 --------~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~--~~l 1179 (1332)
.....++..+++..+++.+++..|+|||++|.+.+||+++... .+|.+..+++........ .--
T Consensus 177 ~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~------~~i~~y~~~~~~~l~~~~~~~l~ 250 (340)
T d1v04a_ 177 KSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLA------HKIHVYEKHANWTLTPLRVLSFD 250 (340)
T ss_dssp HHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEECS
T ss_pred hhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCC------CeEEEEEeCCCcccceEEEecCC
Confidence 1345677788777777777889999999999999999999876 789999998765333221 112
Q ss_pred CCcceEEEecCCCEEEEEE
Q psy5806 1180 AFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1180 ~~p~glaiD~~~~~LY~~d 1198 (1332)
..|..|.+|.+++.|+.+-
T Consensus 251 ~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 251 TLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SEEEEEEECTTTCCEEEEE
T ss_pred CCCCccEEecCCCEEEEEE
Confidence 4588999998888887763
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.04 E-value=0.0033 Score=69.94 Aligned_cols=313 Identities=7% Similarity=-0.054 Sum_probs=162.5
Q ss_pred EEeecCCCceEEEEecC----CCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCC---------CCeEEEE
Q psy5806 743 SVDVDTKNEYIYWSDIS----EKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMN---------AQTIMVS 809 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~----~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~---------~~~I~v~ 809 (1332)
.+++.+...++|.++.. ...|+.++.........+.. ..+.++++.+.++.||++... .+.|.+.
T Consensus 25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~ 102 (373)
T d2madh_ 25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC--CCCccEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence 34455666777776543 23455554432222222322 234489999999999998643 3567787
Q ss_pred eCCCC-ceEEEEe------cCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCC
Q psy5806 810 DIDGK-NAKVLFW------LNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYS 882 (1332)
Q Consensus 810 ~ldG~-~~~~l~~------~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~ 882 (1332)
++... ....+.. .....|+++++.+....+|+..+... ..+....... .+. ......|.++.+...
T Consensus 103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~----~~~~~~~~~~--~~~-~~~~~~~~~~~~s~~ 175 (373)
T d2madh_ 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG----PAVGLVVQGG--SSD-DQLLSSPTCYHIHPG 175 (373)
T ss_pred ECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC----CceEEeeccC--CeE-EEEeccceeEEEecC
Confidence 77533 2222211 11245788899888777777766543 2333322222 111 122455778888888
Q ss_pred CCCeEEEEeCCCCeEEEEccCCCceeEEec-----cCCcc--eEEEEeCCEEEEEeCCCCEEEEEECCCCeEEE-eeeec
Q psy5806 883 DNPKLYWVDTSKHTIEYKTLATGRAKRAYA-----VQSHP--YTLTVLDYYVYWTDVQHSKIYRANKYDVKDIV-EFAQV 954 (1332)
Q Consensus 883 ~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~-----~~~~P--~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~-~~~~~ 954 (1332)
+ +.+|++....+.+...+..+........ ....| ..++..++..+..-...+++...+...+.... .....
T Consensus 176 g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 254 (373)
T d2madh_ 176 A-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred C-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence 8 8899998888888888876654333222 11222 23444444444444455666666555442211 11110
Q ss_pred CcceEEe-ccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccc--ccCcceEEEE-eecceEEEEeCC
Q psy5806 955 DRPWLVR-AAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF--SRTREFLLYT-SRFGVIRRISLD 1030 (1332)
Q Consensus 955 ~i~~~~~-~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~--~~p~~~ll~~-~~~~~i~~i~l~ 1030 (1332)
....... ...+ ++...+.+. .|+.... ..+...++.. .... |..+++.
T Consensus 255 ~~~~~~~~~~~~-----------~~~~~~~~~----------------~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~ 306 (373)
T d2madh_ 255 LSGGRKADTWRP-----------GGWQQVAYL----------------KSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGL 306 (373)
T ss_pred ccCcEEeeeecc-----------CcceeeEEe----------------cCCCeEEEecCCCceEEeecCCCe-EEEEECC
Confidence 0000000 0000 011111111 1111110 0112222222 2233 5555554
Q ss_pred CCCCCCcccccCCccceEEEEEeCCCcE-EEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEE
Q psy5806 1031 TADLLPVTLPFPEYMSSIFFDYHYSKNL-IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID 1097 (1332)
Q Consensus 1031 ~~~~~~~~~pi~~~~~~~~id~d~~~~~-lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvD 1097 (1332)
... .+..++.-..+.+++|++.+++ ||.+....+.|+.+++.+|.....+. .....|..|++.
T Consensus 307 t~~---~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~ 370 (373)
T d2madh_ 307 VGQ---TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVM 370 (373)
T ss_pred CCc---EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCCcEEEEe
Confidence 332 2333444456789999998876 56677788999999988665444432 234589999987
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.04 E-value=0.00044 Score=79.82 Aligned_cols=193 Identities=8% Similarity=-0.032 Sum_probs=136.0
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE--EecCCCCc
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI--LVNDLMEP 1133 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~--~~~~~~~P 1133 (1332)
+.++++....++|..+++.++....++- ....|.+||+.+.++.||.++.. +.|.+++++ ++...+ +. ....|
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~--~g~~~~~vafSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~-~~~~~ 107 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIK-IGIEA 107 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEE--CCSSEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEE-CCSEE
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEe--CCCCeeEEEECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEe-CCCCC
Confidence 4566778888999999987554444432 23579999999999999998754 689999997 443332 33 33568
Q ss_pred eEEEEcC----CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----------CCCCcceEEEecCCCEEEEEE
Q psy5806 1134 LAIAVYP----RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-----------DLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1134 ~~iavdp----~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-----------~l~~p~glaiD~~~~~LY~~d 1198 (1332)
.++++++ ...+||.+.... ..|...+........+... .-..+..++...++..++++.
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~ 181 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWP------PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEES------SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred cceEEeeeecCCCCEEEEeecCC------CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence 8888875 456788887655 4566666655443333221 112345677788899999999
Q ss_pred cCCCeEEEEecCCC-ce-EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1199 STNKRIEYCDFFGR-SR-KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~-~~-~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
..++.|...+.... .. ...+. ...|.++++ ++.+.++|++....+.+..++..++ +.+..+
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 245 (426)
T d1hzua2 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW-----DSSHRYFMTAANNSNKVAVIDSKDR---RLSALV 245 (426)
T ss_dssp TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE-----CTTSCEEEEEETTCSEEEEEETTTT---EEEEEE
T ss_pred CCCCeEEEEEeccccceeeEEeccCCccEeeeE-----CCCCcEEEeeeecccceeeeecccc---cEEEEe
Confidence 99999988877543 32 23334 888999999 6678899999999999999998877 544444
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.03 E-value=0.00068 Score=78.77 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=103.2
Q ss_pred eEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEe-cCC-------CCCeEEEEeC---CCCeEEEE
Q psy5806 774 ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFW-LNL-------YRPRSIVVHY---GLGLMVWA 842 (1332)
Q Consensus 774 ~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~-~~~-------~~P~~Iavdp---~~g~lywt 842 (1332)
.+++.+++..|.+||+...++ ||+++....+|.+.+.++...+.+.. ... .---+||+|| .++++|++
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 455677899999999998765 99999888899999876555444331 111 1124799998 47899986
Q ss_pred ecccCcC-------CCCceEEEecCCCCc-----EEEecc---cc--cCceeEEeCCCCCeEEEEeCC------------
Q psy5806 843 DWSRTRL-------TNNRIEMAHMDGTNR-----AVFETE---VI--WPSCLAIDYSDNPKLYWVDTS------------ 893 (1332)
Q Consensus 843 d~g~~~~-------~~~~I~r~~~dG~~~-----~~l~~~---l~--~P~gl~iD~~~~~~lYw~d~~------------ 893 (1332)
-...... ....+.|...++... +++... .. .-..|+++.++ +||++-..
T Consensus 98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG--~LYvs~Gd~~~~~~~~~~~~ 175 (450)
T d1crua_ 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ--KIYYTIGDQGRNQLAYLFLP 175 (450)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS--CEEEEECCTTTTSGGGTTSC
T ss_pred EecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCC--CEEEEecCCCcccccccccc
Confidence 4311000 001355655555432 233322 11 12368998865 89997542
Q ss_pred --------------------CCeEEEEccCCCce-----------eEEeccCCcceEEEEe-CCEEEEEeCC
Q psy5806 894 --------------------KHTIEYKTLATGRA-----------KRAYAVQSHPYTLTVL-DYYVYWTDVQ 933 (1332)
Q Consensus 894 --------------------~~~I~~~~~dG~~~-----------~~l~~~~~~P~~la~~-~~~iywtD~~ 933 (1332)
.++|.+++.+|+.. ++....+..|++++++ .+.||.+|-.
T Consensus 176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G 247 (450)
T d1crua_ 176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQG 247 (450)
T ss_dssp CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEEC
T ss_pred cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeecccc
Confidence 37899999988643 3445588999999998 6789998854
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.00 E-value=0.00014 Score=82.09 Aligned_cols=223 Identities=9% Similarity=-0.120 Sum_probs=136.4
Q ss_pred EEEEeCCCcEEEEEeCC---------CCeEEEEECCCCCCceeEee------cCCCCceeeEEEecCCeEEEEcCCCceE
Q psy5806 1049 FFDYHYSKNLIYFADMR---------SGNLRTFDMSDSTRIKPIPL------MNDTIRDNFVIDWVANNIYYIDSQMHTI 1113 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~---------~~~I~~~~l~~g~~~~~i~~------~~~~~p~glAvDw~~~~LY~td~~~~~I 1113 (1332)
.+++.+.++.||+++.. .+.|..+++..+.....+.. .....|.++|+.+.++.||+++...+.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 67889999999998742 34588888764443333321 1234688999999999999999888889
Q ss_pred EEEeeCCceE-EEEec-C------CCCceEEEEcCCCcEEEEEecCCCC-----------------------------CC
Q psy5806 1114 NVARSDGQHK-KILVN-D------LMEPLAIAVYPRRGLLFYSHWGLYD-----------------------------NS 1156 (1332)
Q Consensus 1114 ~v~~ldG~~~-~~~~~-~------~~~P~~iavdp~~g~Lywtd~~~~~-----------------------------~~ 1156 (1332)
.++++..... ..+.. + ...+..+++.+....++|+...... ..
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 8888875432 22211 0 1123334555533344443211100 00
Q ss_pred CCCcEEEEecCCCceEEEEecCC------------CCcceEEEecCCCEEEEEEcCC--------CeEEEEecCCCceEE
Q psy5806 1157 PTTKIEKVYLDGSYRTVLVEEDL------------AFPNELAIDFKQRRLFWADSTN--------KRIEYCDFFGRSRKI 1216 (1332)
Q Consensus 1157 ~~~~I~r~~ldG~~~~~l~~~~l------------~~p~glaiD~~~~~LY~~d~~~--------~~I~~~d~dG~~~~~ 1216 (1332)
...+++.+++++.....+..... ..+..+++.++.+++|++.... .+|..+|.....+..
T Consensus 229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~ 308 (368)
T d1mdah_ 229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence 01234455554444333221111 1244689999999999985432 358888887554433
Q ss_pred EEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEE
Q psy5806 1217 VIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAI 1280 (1332)
Q Consensus 1217 ~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 1280 (1332)
.+. ...|.+|++ ++++. .||.+....+.|+.+|..+| +.+..+.-+ ..|..|.++
T Consensus 309 ~~~~~~~~~~~a~-----spDG~~~ly~s~~~~~~v~v~D~~tg---k~~~~i~~g-~~P~~l~~~ 365 (368)
T d1mdah_ 309 PISNGHDSDAIIA-----AQDGASDNYANSAGTEVLDIYDAASD---QDQSSVELD-KGPESLSVQ 365 (368)
T ss_dssp CCEEEEEECEEEE-----CCSSSCEEEEEETTTTEEEEEESSSC---EEEEECCCC-SCCCEEECC
T ss_pred EecCCCceeEEEE-----CCCCCEEEEEEeCCCCeEEEEECCCC---CEEEEEECC-CCCCEEEEe
Confidence 334 678999999 33443 58999999999999999998 665555432 347777654
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=9.2e-07 Score=69.78 Aligned_cols=34 Identities=35% Similarity=0.799 Sum_probs=31.2
Q ss_pred CCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 976 NGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 976 nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+.+|+|+|.++|++|+|.|+.||.|..|+++|+.
T Consensus 19 ~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~ 52 (53)
T d1apqa_ 19 QPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence 3568999999999999999999999999999974
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=4.6e-07 Score=67.42 Aligned_cols=40 Identities=25% Similarity=0.683 Sum_probs=37.0
Q ss_pred CCcccCCCCCCcc-ccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSH-LCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCsh-lCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|+|+.+++.|.| .|.+++++|+|.|+.||.|..|+++|+
T Consensus 2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv 42 (42)
T d1lmja2 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42 (42)
T ss_dssp CCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred ccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence 4789999999988 999999999999999999999999985
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.2e-06 Score=65.38 Aligned_cols=39 Identities=26% Similarity=0.663 Sum_probs=33.9
Q ss_pred ccccCC--CCccee-eeccCCCceEEeCCCCceec-CCCCCcC
Q psy5806 392 YQSHCA--PKVCSH-ICLPNKHRFTCQCPLGLTLS-PDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~--~g~Csh-lCl~~~~~~~C~C~~G~~L~-~d~~tC~ 430 (1332)
++|||+ +..|+| .|+|.+|+|+|.|+.||++. +++++|.
T Consensus 2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~Cv 44 (44)
T d1lmja1 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44 (44)
T ss_dssp CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcCC
Confidence 478998 667877 89999999999999999996 6888883
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.93 E-value=0.00025 Score=78.09 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=68.3
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC----
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN---- 1087 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~---- 1087 (1332)
..||+..+++..|.-++++..... ...+++....|.+++++++++++|+++...+.|..+++.++.....+....
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~-~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~ 86 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 86 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEE-EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc
Confidence 567777776554888887644321 122455556788999999999999999889999999987554333332111
Q ss_pred -CCCceeeEEEecCCeEEEEcC
Q psy5806 1088 -DTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1088 -~~~p~glAvDw~~~~LY~td~ 1108 (1332)
...|.+++++..++.||+++.
T Consensus 87 ~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 87 VGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEECSSCEEECTTSSEEEEEEE
T ss_pred cCCceEEEEEecCCCEEEEEec
Confidence 125889999999999999864
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=8e-07 Score=66.48 Aligned_cols=40 Identities=35% Similarity=0.778 Sum_probs=36.5
Q ss_pred CCcccCCCCCCc-cccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCS-HLCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCs-hlCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|.|+..++.|. |.|++++++|.|.|+.||.|..++++|.
T Consensus 3 inEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce 43 (43)
T d1uzka2 3 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43 (43)
T ss_dssp CCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred cccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence 578988888886 7999999999999999999999999984
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.90 E-value=0.0013 Score=72.87 Aligned_cols=96 Identities=9% Similarity=0.008 Sum_probs=65.4
Q ss_pred CceEEEEcCCCcEEEEEecCCCC---CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCC-EEEEEEcCCCeEEEE
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYD---NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR-RLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~---~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~-~LY~~d~~~~~I~~~ 1207 (1332)
.+..++++|....+||+...... ......|...++........+..+ ..|.++++.++++ +||.+....+.|..+
T Consensus 250 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~ 328 (355)
T d2bbkh_ 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIH 328 (355)
T ss_dssp SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred ceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence 34669999988899998644310 112356888887655443333322 5688999999887 467777788999999
Q ss_pred ecC-CCceEEEEe-ecccceEEE
Q psy5806 1208 DFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1208 d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
|.. |+..+.+.. +..|..|++
T Consensus 329 D~~tg~~~~~i~~~G~~p~~i~~ 351 (355)
T d2bbkh_ 329 DAESGEELRSVNQLGHGPQVITT 351 (355)
T ss_dssp ETTTCCEEEEECCCCSSCCEEEC
T ss_pred ECCCCCEEEEEeCcCCCccEEEe
Confidence 985 544444444 788888887
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2.6e-06 Score=63.58 Aligned_cols=38 Identities=21% Similarity=0.622 Sum_probs=32.9
Q ss_pred cccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 391 NYQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 391 ~~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+.|||+ +..|.|.|+|.+|+|.|.|+.||+| ++++|.
T Consensus 3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~--~g~~C~ 42 (43)
T d1emoa1 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECV 42 (43)
T ss_dssp CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE--SSSCEE
T ss_pred cceeccCCcCCCCCCEeECCCCCeEeECCCCccc--CCCccc
Confidence 4679998 5678999999999999999999998 567774
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1.7e-06 Score=62.81 Aligned_cols=38 Identities=29% Similarity=0.681 Sum_probs=32.2
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEc-cCCccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLS-ADRRSC 1007 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~-~d~~tC 1007 (1332)
.|+|+. +++|+|+|.+++++|+|.|++||.|. .++++|
T Consensus 2 idEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~~~~~C 40 (40)
T d1dx5i3 2 IDECEN-GGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40 (40)
T ss_dssp CCHHHH-CSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred ccccCC-CcCccCEeeCCCCCeEeECCCCCeeCCCCCCCC
Confidence 478875 58999999999999999999999996 356655
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.72 E-value=0.0024 Score=70.49 Aligned_cols=222 Identities=12% Similarity=-0.024 Sum_probs=133.9
Q ss_pred EEEEEeCCCcEEEEEeCC---------CCeEEEEECCCCCCceeEeec------CCCCceeeEEEecCCeEEEEcCCC-c
Q psy5806 1048 IFFDYHYSKNLIYFADMR---------SGNLRTFDMSDSTRIKPIPLM------NDTIRDNFVIDWVANNIYYIDSQM-H 1111 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~---------~~~I~~~~l~~g~~~~~i~~~------~~~~p~glAvDw~~~~LY~td~~~-~ 1111 (1332)
.+++|++.+++||+++.. .+.|..+++.++.....+... ....|.++++...++.+|+++... .
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 378999999999998742 357888887765544443321 134689999999999999987653 4
Q ss_pred eEEEEeeCC-ceEEEEec-------CCCCceEEEEcCCCcEEEEEecCCCC-----------------------------
Q psy5806 1112 TINVARSDG-QHKKILVN-------DLMEPLAIAVYPRRGLLFYSHWGLYD----------------------------- 1154 (1332)
Q Consensus 1112 ~I~v~~ldG-~~~~~~~~-------~~~~P~~iavdp~~g~Lywtd~~~~~----------------------------- 1154 (1332)
.+.+.+... +....+.. ....+..+++.+....++|+......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 209 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence 555666653 32222211 11244566777766666665432200
Q ss_pred --CCCCCcEEEEecCCCceEEEEecCC------------CCcceEEEecCCCEEEEEEcCC---------CeEEEEecCC
Q psy5806 1155 --NSPTTKIEKVYLDGSYRTVLVEEDL------------AFPNELAIDFKQRRLFWADSTN---------KRIEYCDFFG 1211 (1332)
Q Consensus 1155 --~~~~~~I~r~~ldG~~~~~l~~~~l------------~~p~glaiD~~~~~LY~~d~~~---------~~I~~~d~dG 1211 (1332)
.....+++..++++.....+-.... ..+..+++.+++.++|++.... +.|...|...
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t 289 (355)
T d2bbkh_ 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289 (355)
T ss_dssp EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence 0001234444444433322211000 1123588999999999985432 4688888764
Q ss_pred CceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1212 RSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1212 ~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
..+...+. ...|.+|++ ++++. .||.+....++|..+|..+| +.+..+..--..|+-|
T Consensus 290 ~~~~~~~~~~~~~~~~a~-----spDG~~~l~v~~~~d~~i~v~D~~tg---~~~~~i~~~G~~p~~i 349 (355)
T d2bbkh_ 290 GERLAKFEMGHEIDSINV-----SQDEKPLLYALSTGDKTLYIHDAESG---EELRSVNQLGHGPQVI 349 (355)
T ss_dssp CCEEEEEEEEEEECEEEE-----CCSSSCEEEEEETTTTEEEEEETTTC---CEEEEECCCCSSCCEE
T ss_pred CcEEEEecCCCCEEEEEE-----cCCCCeEEEEEECCCCEEEEEECCCC---CEEEEEeCcCCCccEE
Confidence 44333334 677999999 33344 47888888999999999998 6665554333344444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.71 E-value=0.0033 Score=69.97 Aligned_cols=214 Identities=10% Similarity=-0.058 Sum_probs=127.7
Q ss_pred eEEEEEeCCCcEEEEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
+.++.|.+.++.+|+.... .+.+...+.. ..+.. .....|.++++.+.++.+|++....+.+.+++.+......
T Consensus 127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~ 201 (373)
T d2madh_ 127 SWMNANTPNNADLLFFQFAAGPAVGLVVQG---GSSDD--QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA 201 (373)
T ss_pred CCcEEEEeCCCcEEEEEEcCCCceEEeecc---CCeEE--EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence 4567778888888776643 3444444433 11221 2234688999999999999999888899888887543322
Q ss_pred -Eec------CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC------------CCCcceEE
Q psy5806 1126 -LVN------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED------------LAFPNELA 1186 (1332)
Q Consensus 1126 -~~~------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~------------l~~p~gla 1186 (1332)
... ....+..++.++....++.+. + .++...+..+.....+.... ...+..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (373)
T d2madh_ 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-S-------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA 273 (373)
T ss_pred EEeeeccccCccceeeeEEECCCceEEEecC-C-------ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeE
Confidence 111 112344555665333333332 1 34555555443322221111 12234567
Q ss_pred EecCCCEEEEEEcC---------CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccE-EEEEECCCCEEEEEEe
Q psy5806 1187 IDFKQRRLFWADST---------NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVE-LYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~---------~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~-lYwtd~~~~~V~~~~~ 1255 (1332)
+.+++.++|++... .+.|..+|.....+...+. ...|.+|++ ++++.+ ||.+....+.|+..|.
T Consensus 274 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~-----spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV-----AQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE-----CCCCCEEEEEEeCCCCeEEEEEC
Confidence 77778888876443 3456666664433333334 677899999 334444 6889999999999999
Q ss_pred cCCCCcceEEEEecCCCCeeeEEEEe
Q psy5806 1256 KSDTGQWDVHLIRSNQEDFLNIKAIS 1281 (1332)
Q Consensus 1256 ~~g~~~~~~~~~~~~~~~~~~i~~~~ 1281 (1332)
.+| +.+..+...-..|..|.+.+
T Consensus 349 ~tg---~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 349 GAG---DQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred CCC---CEEEEECCCCCCCcEEEEec
Confidence 999 77776665445666665543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.69 E-value=0.00018 Score=79.33 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=72.0
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEEEEec
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKKILVN 1128 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~~~~~ 1128 (1332)
++|.+.++.++.++ ..++|..+++.++.-..++.......|.+|++++.++.||+++...+.|.+++++.. ....+..
T Consensus 2 ~a~~~~~~~l~~~~-~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN-YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEE-TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEc-CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 45666666666555 667899999875533333332334579999999999999999998899999999844 3333322
Q ss_pred C------CCCceEEEEcCCCcEEEEEec
Q psy5806 1129 D------LMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1129 ~------~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
. ...|.+++++|...+||++..
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEec
Confidence 1 135899999998889999864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.67 E-value=0.019 Score=62.35 Aligned_cols=238 Identities=11% Similarity=-0.020 Sum_probs=147.8
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-EeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-IPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-i~~~~~~~ 1090 (1332)
...|+|...+. |...+++......... .....+..++|.+.++.|...+ ..+.|+..++..+..... ......+.
T Consensus 29 g~~l~~~~~~~-v~i~~~~~~~~~~~~~--~H~~~v~~~~~sp~g~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 104 (311)
T d1nr0a1 29 GDKIQYCNGTS-VYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGD-VHGNVRIWDTTQTTHILKTTIPVFSGP 104 (311)
T ss_dssp SSEEEEEETTE-EEEEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEESSSTTCCEEEEEECSSSC
T ss_pred CCEEEEEeCCE-EEEEECCCCceeEEEc--CCCCCEEEEEEeCCCCeEeccc-cCceEeeeeeeccccccccccccccCc
Confidence 34566777666 7766776443322211 1234578999999887765554 678899989875443322 22223346
Q ss_pred ceeeEEEecCCeEEEEcCC-CceEEEEeeCC-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQ-MHTINVARSDG-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~-~~~I~v~~ldG-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
+..|++.+.++.|..+... ...+.+.+++- +....+.......+.|+++|...+++.+-... ..|...++..
T Consensus 105 v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d------~~i~i~d~~~ 178 (311)
T d1nr0a1 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD------NTVAIFEGPP 178 (311)
T ss_dssp EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT------SCEEEEETTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc------cccccccccc
Confidence 7888988777777665433 33477788873 33333433345678999999777777775443 5677777776
Q ss_pred CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe---------ecccceEEEecCCccccccE
Q psy5806 1169 SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS---------KVAPYGLSVRQSPGKAFIVE 1239 (1332)
Q Consensus 1169 ~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~---------~~~P~glav~~~~~~~~~~~ 1239 (1332)
..........-.....++++++++.|+.+. ..+.|...|+....+..... .....+|++ .+.+.+
T Consensus 179 ~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-----s~~~~~ 252 (311)
T d1nr0a1 179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW-----SPDGTK 252 (311)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE-----CTTSSE
T ss_pred cccccccccccccccccccCcccccccccc-cccccccccccccccccccccccccccccccccccccc-----CCCCCE
Confidence 655555543344567899998877777654 56788888886444333332 122356777 234555
Q ss_pred EEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1240 LYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1240 lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
|+.. ...+.|+..|..++ +....+..
T Consensus 253 l~tg-s~Dg~v~iwd~~t~---~~~~~l~~ 278 (311)
T d1nr0a1 253 IASA-SADKTIKIWNVATL---KVEKTIPV 278 (311)
T ss_dssp EEEE-ETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEEE-eCCCeEEEEECCCC---cEEEEEEC
Confidence 6544 45778998898877 54444443
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.7e-05 Score=59.06 Aligned_cols=38 Identities=21% Similarity=0.627 Sum_probs=34.4
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcccc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|+|+..+..|.|.|.+++++|.|.|+.||.+ ++++|+
T Consensus 5 idEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~--~g~~C~ 42 (43)
T d1emoa1 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECV 42 (43)
T ss_dssp CCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE--SSSCEE
T ss_pred eeccCCcCCCCCCEeECCCCCeEeECCCCccc--CCCccc
Confidence 68999999999999999999999999999998 456785
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=1.1e-05 Score=60.23 Aligned_cols=40 Identities=23% Similarity=0.659 Sum_probs=35.8
Q ss_pred CCcccCCCCCCcc-ccccCCCCccccCCCCeeEc-cCCcccc
Q psy5806 969 PNACGSNNGGCSH-LCLRNPTNFTCACPTGILLS-ADRRSCF 1008 (1332)
Q Consensus 969 ~n~C~~~nGgCsh-lCl~~p~~~~C~Cp~g~~l~-~d~~tC~ 1008 (1332)
.|+|+..+..|+| .|.+++++|.|.|+.||.++ .++++|+
T Consensus 3 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~Cv 44 (44)
T d1lmja1 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44 (44)
T ss_dssp CCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred ccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcCC
Confidence 5889998889987 89999999999999999996 5788884
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.59 E-value=0.0023 Score=71.73 Aligned_cols=96 Identities=7% Similarity=-0.016 Sum_probs=67.1
Q ss_pred CceEEEEcCCCcEEEEEecCCCC--CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCC-EEEEEEcCCCeEEEEe
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYD--NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR-RLFWADSTNKRIEYCD 1208 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~--~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~-~LY~~d~~~~~I~~~d 1208 (1332)
.+..++++|..+.+|++...... .....+|..+++....+...+..+ ..|.++++.++++ +||.+....+.|..+|
T Consensus 265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 35678999999999998644310 112346777877655543333322 4688999999876 6899999999999999
Q ss_pred cCCCceEEEEe-ecccceEEE
Q psy5806 1209 FFGRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1209 ~dG~~~~~~~~-~~~P~glav 1228 (1332)
.......-.+. +..|.+|++
T Consensus 344 ~~tgk~~~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 344 AASDQDQSSVELDKGPESLSV 364 (368)
T ss_dssp SSSCEEEEECCCCSCCCEEEC
T ss_pred CCCCCEEEEEECCCCCCEEEE
Confidence 86444333445 788999998
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.53 E-value=0.0024 Score=71.11 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=129.8
Q ss_pred CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC-------------------ceEEE
Q psy5806 1055 SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM-------------------HTINV 1115 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~-------------------~~I~v 1115 (1332)
.+++||+.|-.+++|.+|+++...-.+++...+...+.|+.+....+..|+..... +.+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 57899999999999999999854333344334556889999987788888875332 23445
Q ss_pred EeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCC--------CCCCCc-----------------------EEE
Q psy5806 1116 ARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYD--------NSPTTK-----------------------IEK 1163 (1332)
Q Consensus 1116 ~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~--------~~~~~~-----------------------I~r 1163 (1332)
++.+.-...- +.-+ ..|..++++|..+++|+|..+... .+.... +-.
T Consensus 178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 5555322111 2223 368999999999999999644200 000111 122
Q ss_pred EecC---CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC--------CC-ceEEEEe----ecccceEE
Q psy5806 1164 VYLD---GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF--------GR-SRKIVIS----KVAPYGLS 1227 (1332)
Q Consensus 1164 ~~ld---G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d--------G~-~~~~~~~----~~~P~gla 1227 (1332)
++.. ++.....+... ..|.|+.++++++.+|++..-.+.+..+|+. +. .+.+++. +..|..-+
T Consensus 257 VD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~ 335 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 335 (459)
T ss_dssp EECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred ecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence 2211 11222223322 5699999999999999999999999999994 22 2333332 78898889
Q ss_pred EecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+ |..++.|.|..-...|.+.+..
T Consensus 336 f------d~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 336 F------DGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp E------CTTSEEEEEETTTTEEEEEEHH
T ss_pred c------CCCceEEEEeeccceEEEEecc
Confidence 9 5578999999999999999863
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.47 E-value=0.0016 Score=70.94 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=95.1
Q ss_pred EEeCCCCeEEEEECCCCCCceeEeec-CCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecC-----CCCc
Q psy5806 1061 FADMRSGNLRTFDMSDSTRIKPIPLM-NDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVND-----LMEP 1133 (1332)
Q Consensus 1061 ~sd~~~~~I~~~~l~~g~~~~~i~~~-~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~-----~~~P 1133 (1332)
++....++|+.+++.++.-...+... ....|.+|++++.++.||++....+.|.++++. |+....+... ...|
T Consensus 5 vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 84 (337)
T d1pbyb_ 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred EEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccce
Confidence 33345567777776643333333222 234689999999999999998888999999997 5544433211 2457
Q ss_pred eEEEEcCCCcEEEEEecCCCC-----CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEe
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLYD-----NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCD 1208 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~~-----~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d 1208 (1332)
.+++++|...+||++...... ......+...++........+.. -..|.++++++++++||.+. +.+..+|
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---~~~~~~d 160 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG---RDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES---SSEEEEE
T ss_pred eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEc---CCcceee
Confidence 899999999999999743200 01124566666655444444443 36789999999999999874 2345555
Q ss_pred cC
Q psy5806 1209 FF 1210 (1332)
Q Consensus 1209 ~d 1210 (1332)
..
T Consensus 161 ~~ 162 (337)
T d1pbyb_ 161 PE 162 (337)
T ss_dssp TT
T ss_pred ee
Confidence 54
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.42 E-value=6.4e-05 Score=86.41 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=143.4
Q ss_pred ceEEEEe--ecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeE------------------EEE
Q psy5806 1013 EFLLYTS--RFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNL------------------RTF 1072 (1332)
Q Consensus 1013 ~~ll~~~--~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I------------------~~~ 1072 (1332)
.||+++. .+. |..|+++..... -+..++....|.+++|.+..+++|++......+ ..+
T Consensus 84 r~lfV~d~~~~r-VavIDl~t~k~~-~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i 161 (441)
T d1qnia2 84 KYLFINDKANTR-VARIRLDIMKTD-KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI 161 (441)
T ss_dssp EEEEEEETTTTE-EEEEETTTTEEE-EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred CEEEEEcCCCCE-EEEEECCCCcEe-eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence 4555553 234 777777644322 234566677899999999999999986544333 445
Q ss_pred ECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEEEEecCCCCceEEEEcCCCcEEEEEecC
Q psy5806 1073 DMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKKILVNDLMEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1073 ~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~~~~~~~~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
+.........+. -.+.|.+++++..++.+|++..+.+.+.+.+.... .+..+. -.+.|+++++.|...++++.+.
T Consensus 162 D~~t~~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~-v~n~p~~~~~~~dGk~~~v~~~- 237 (441)
T d1qnia2 162 DAETMDVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV-VFNVERIAAAVKAGNFKTIGDS- 237 (441)
T ss_dssp ETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE-EEEHHHHHHHHHTTCCBCCTTC-
T ss_pred cCccceeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE-eCCccceEEEecCCCEEEeCCC-
Confidence 544222222222 13479999999999999999887665543333221 111121 2246788888886665554322
Q ss_pred CCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC-------CC--ceEEEEe---
Q psy5806 1152 LYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-------GR--SRKIVIS--- 1219 (1332)
Q Consensus 1152 ~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-------G~--~~~~~~~--- 1219 (1332)
..+.............+..+ ..|.|++++++++.||.+....+.|..+|++ |. .+..++.
T Consensus 238 -------~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~ 309 (441)
T d1qnia2 238 -------KVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE 309 (441)
T ss_dssp -------CCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB
T ss_pred -------CcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc
Confidence 22333334444444455554 6799999999999999999999999999974 22 1223322
Q ss_pred -ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1220 -KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1220 -~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
+..|..-++ +-+++.|-+..-..+|.+.+..
T Consensus 310 ~glgplh~~f------d~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 310 LGLGPLHTTF------DGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp CCSCEEEEEE------CSSSEEEEEETTTTEEEEEEHH
T ss_pred cccCccccee------cCCceEEEcccccceEEEeccc
Confidence 555666677 4568899999899999998863
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.35 E-value=0.026 Score=62.03 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=116.6
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEe---c-CC---eEEEEcCC--CceEEEEeeCCceEE
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW---V-AN---NIYYIDSQ--MHTINVARSDGQHKK 1124 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw---~-~~---~LY~td~~--~~~I~v~~ldG~~~~ 1124 (1332)
+....|+=+|-..| |+.++|+ |.....+ ..+.+..+.+=- . ++ .++.++.. +.+|.++.+++....
T Consensus 38 p~~SlI~gTdK~~G-l~vYdL~-G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~ 112 (353)
T d1h6la_ 38 PQNSKLITTNKKSG-LAVYSLE-GKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (353)
T ss_dssp GGGCEEEEEETTSC-CEEEETT-CCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred cCccEEEEEcCcCC-EEEEcCC-CcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence 34456666665555 8888876 5444332 344555443321 1 11 24566654 457877877754322
Q ss_pred E--E-------ecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEE--EecCCCc--eEEEEe--cCCCCcceEEE
Q psy5806 1125 I--L-------VNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEK--VYLDGSY--RTVLVE--EDLAFPNELAI 1187 (1332)
Q Consensus 1125 ~--~-------~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r--~~ldG~~--~~~l~~--~~l~~p~glai 1187 (1332)
. + ...+..|+||++ +|..|.+|..-... .+.+++ +..++.. ...++. ..-..+.|+++
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k-----~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVv 187 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGK-----EGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAA 187 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECS-----SSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEE
T ss_pred cccccccccccccccCcceEEEEEecCCCCeEEEEEEcC-----CceEEEEEEEcCCCCceeeEeeeccCCCCccceEEE
Confidence 2 1 234567999998 78888654333222 234544 4444432 222222 12356889999
Q ss_pred ecCCCEEEEEEcCCCeEEEEecC---CCceEEEEe------ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1188 DFKQRRLFWADSTNKRIEYCDFF---GRSRKIVIS------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~~~I~~~d~d---G~~~~~~~~------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|.++++||+++-. ..|++++++ +..+..+.. ...|.|||+. +..+-+++|..++.+.++...++..+.
T Consensus 188 Dde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy--~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 188 DDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIY--YAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp ETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEE--ECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred eCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEE--EcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999865 479999886 334555543 4689999991 112235799999999999988887653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.11 E-value=0.0088 Score=65.47 Aligned_cols=180 Identities=15% Similarity=0.100 Sum_probs=117.8
Q ss_pred EEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC-CceEEEEeeCCceEEE
Q psy5806 1048 IFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1048 ~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~~~~~ 1125 (1332)
.+-||+| .++.|-++ ..+.|+..++. +.....+ .....+..+++.+.++.|+++... ...|.+.++++.....
T Consensus 6 ~~~~fSP~dG~~~a~~--~~g~v~v~d~~-~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~ 80 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFV--SRGQAFIQDVS-GTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80 (360)
T ss_dssp GEEEEEECGGGCEEEE--ETTEEEEECTT-SSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred hcccccCCCCCEEEEE--ECCeEEEEECC-CCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE
Confidence 3467888 44444333 34688888876 3222222 234567899999989999876544 3578889998766666
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC-----
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST----- 1200 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~----- 1200 (1332)
+......+..++++|...+|...... ..+...++++.....+..........+++.++++.|.++...
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~ 153 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDR-------FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred eeCCCceEEeeeecccccccceeccc-------cccccccccccceeeeeecccccccchhhccceeeeeeeccccccce
Confidence 55566778999999976677666543 468888998888777766555566789999999999887533
Q ss_pred ----CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEE
Q psy5806 1201 ----NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1201 ----~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
.+.+...+..+.....+.. .....++++ .+++.+|++.-
T Consensus 154 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~-----spdg~~l~~~s 197 (360)
T d1k32a3 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF-----DADSKNLYYLS 197 (360)
T ss_dssp CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEE-----CTTSCEEEEEE
T ss_pred eeccccceeeeccccCceeeecccccccccccc-----cCCCCEEEEEe
Confidence 2235556665543333322 333445555 34566677654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.35 Score=52.05 Aligned_cols=228 Identities=7% Similarity=-0.109 Sum_probs=136.9
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccc---cCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE-eecCC
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLP---FPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMND 1088 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~p---i~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~ 1088 (1332)
.+|+....+. |+--++........+.. ...-..+..++|.+.++.|+.+. ..+.|...++...+..... .....
T Consensus 64 ~~latg~dg~-V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 141 (337)
T d1gxra_ 64 RHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSA 141 (337)
T ss_dssp SEEEEECBSE-EEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSS
T ss_pred CEEEEEECCE-EEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee-ccccccccccccccccccccccccc
Confidence 4554444444 66666654433222111 11223467999999988876655 6788988887643332221 12223
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
.....+++++.+..|+.+ .....|.+.++....... ..........|++++....++..... +.|...++.
T Consensus 142 ~~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-------~~v~i~d~~ 213 (337)
T d1gxra_ 142 PACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLR 213 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETT
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccc
Confidence 355677887666666544 455688889887554433 33334567889999976677666543 457766775
Q ss_pred CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC
Q psy5806 1168 GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
......... .-..+..|+++++++.|+.+. ..+.|...|+.......... .....+|++ .+.+.+| ++-..
T Consensus 214 ~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~-----s~~g~~l-~s~s~ 285 (337)
T d1gxra_ 214 EGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLHESCVLSLKF-----AYCGKWF-VSTGK 285 (337)
T ss_dssp TTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCCSSCEEEEEE-----CTTSSEE-EEEET
T ss_pred cceeecccc-cccceEEEEEcccccccceec-cccccccccccccccccccccccccceEEE-----CCCCCEE-EEEeC
Confidence 444333332 234567889998888887664 56789988987665443333 455677777 2233444 44456
Q ss_pred CCEEEEEEecCC
Q psy5806 1247 AMSVVIAREKSD 1258 (1332)
Q Consensus 1247 ~~~V~~~~~~~g 1258 (1332)
.+.|...+..++
T Consensus 286 Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 286 DNLLNAWRTPYG 297 (337)
T ss_dssp TSEEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 688888887776
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.97 E-value=0.034 Score=60.28 Aligned_cols=198 Identities=6% Similarity=-0.120 Sum_probs=123.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce--E
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH--K 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~--~ 1123 (1332)
.+..+++++.+++|+++. .+.|...+++++.....+ .........+++.+.++.| ++-...+.|.++++.... .
T Consensus 19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~g~~l-atg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCCE
T ss_pred CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCCCCeE-eccccCceEeeeeeecccccc
Confidence 356788999999998875 556888888755444443 2334578899999876666 444456789999997542 2
Q ss_pred -EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 -KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 -~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
..+..-......|+++|...+|..+-.+. ...+...+++-......+.........+++.++++.++++-...+
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~-----~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGR-----ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCS-----SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred ccccccccCccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 22433334678999999666665554332 223444455433322222222344677888888887777767778
Q ss_pred eEEEEecCCCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1203 RIEYCDFFGRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|...|+.......... .....+++. ++.+..|+... ..+.|...+..++
T Consensus 170 ~i~i~d~~~~~~~~~~~~~~~~i~~v~~-----~p~~~~l~~~~-~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 170 TVAIFEGPPFKFKSTFGEHTKFVHSVRY-----NPDGSLFASTG-GDGTIVLYNGVDG 221 (311)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEE-----CTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred cccccccccccccccccccccccccccc-----Ccccccccccc-ccccccccccccc
Confidence 89888887544333333 334467777 23444454443 5677777777665
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.24 Score=53.39 Aligned_cols=190 Identities=6% Similarity=-0.038 Sum_probs=117.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+..+++++.+..++... ..+.|...++.++.. .............|++.+.+..++++.. .+.|.++++. ++...
T Consensus 143 ~v~~~~~~~~~~~l~s~~-~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~~~~~~~-d~~v~i~d~~~~~~~~ 219 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQLQ 219 (337)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEE
T ss_pred cccccccccccccccccc-ccccccccccccccc-cccccccccccccccccccccccccccc-cccccccccccceeec
Confidence 356788888877666554 677888888774322 2222223445678888887778877654 4688888886 44333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.. .-...+.+|+++|...+|+.+... +.|...++.......... .-.....+++.++++.|+-+ ...+.|
T Consensus 220 ~~-~~~~~i~~l~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~-~~~~i~~v~~s~~g~~l~s~-s~Dg~i 289 (337)
T d1gxra_ 220 QH-DFTSQIFSLGYCPTGEWLAVGMES-------SNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWFVST-GKDNLL 289 (337)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTSSCEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSEE
T ss_pred cc-ccccceEEEEEcccccccceeccc-------cccccccccccccccccc-cccccceEEECCCCCEEEEE-eCCCeE
Confidence 33 233567899999976666655433 467777887666543322 23456788898877766544 456788
Q ss_pred EEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1205 EYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1205 ~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
...|+.......... .....++++ .+.+.+|..+ ...+.|...+
T Consensus 290 ~iwd~~~~~~~~~~~~~~~v~~~~~-----s~d~~~l~t~-s~D~~I~vWd 334 (337)
T d1gxra_ 290 NAWRTPYGASIFQSKESSSVLSCDI-----SVDDKYIVTG-SGDKKATVYE 334 (337)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEE-----CTTSCEEEEE-ETTSCEEEEE
T ss_pred EEEECCCCCEEEEccCCCCEEEEEE-----eCCCCEEEEE-eCCCeEEEEE
Confidence 888886443332222 555677777 2234444433 3556665554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.60 E-value=0.11 Score=54.11 Aligned_cols=226 Identities=14% Similarity=0.085 Sum_probs=126.2
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccC-CccceEEEEEeCCCcEEEEEeCCC-----CeEEEEECCCCCCceeEeec
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFP-EYMSSIFFDYHYSKNLIYFADMRS-----GNLRTFDMSDSTRIKPIPLM 1086 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~-~~~~~~~id~d~~~~~lY~sd~~~-----~~I~~~~l~~g~~~~~i~~~ 1086 (1332)
.+++|+..+. |..++++..... ++. ......+..|+|.+++|+|+.... ..|+.+++.+| ....+...
T Consensus 13 ~~v~f~~~~d-l~~~d~~~g~~~----~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g-~~~~lt~~ 86 (281)
T d1k32a2 13 DRIIFVCCDD-LWEHDLKSGSTR----KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-EIKRITYF 86 (281)
T ss_dssp TEEEEEETTE-EEEEETTTCCEE----EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-EEEECCCC
T ss_pred CEEEEEeCCc-EEEEECCCCCEE----EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC-ceEEeeec
Confidence 4788888888 999998855432 222 223456788999999998875322 24888887743 33232211
Q ss_pred C------CCCceeeEEEecCCeEEEEcCCC-----ceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCC-
Q psy5806 1087 N------DTIRDNFVIDWVANNIYYIDSQM-----HTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD- 1154 (1332)
Q Consensus 1087 ~------~~~p~glAvDw~~~~LY~td~~~-----~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~- 1154 (1332)
. .......+..+.++.||++.... ..+...+.++........+ ....+...+....+|........
T Consensus 87 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 164 (281)
T d1k32a2 87 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG--PATHILFADGRRVIGRNTFELPHW 164 (281)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSEEEEETTEEEEEESCSCCTTS
T ss_pred CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC--ccceeeecCCCeEEEeecccccee
Confidence 1 11345567777889999875442 2455667776655443222 22334444433334433322100
Q ss_pred ---CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEe--ecccceEE
Q psy5806 1155 ---NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVIS--KVAPYGLS 1227 (1332)
Q Consensus 1155 ---~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~--~~~P~gla 1227 (1332)
...................+.... ..-...... .+.+++... ....|+.+|++|...+.+.. ...+..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~S 241 (281)
T d1k32a2 165 KGYRGGTRGKIWIEVNSGAFKKIVDMS-THVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLN 241 (281)
T ss_dssp TTCCSTTCCEEEEEEETTEEEEEECCS-SCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEE
T ss_pred eeeccCCcceeeeeccccceeeccCCc-cccceeeee--ccccceecccccccceEEEeCCCCceEEeecCCCcccccCc
Confidence 001112222333333333332211 222222333 445666544 35569999999988776655 33444667
Q ss_pred EecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
. ++.+|+|+. .+.|++++..+|
T Consensus 242 p-------DG~~I~f~~--~~~l~~~d~~~g 263 (281)
T d1k32a2 242 T-------DGRRILFSK--GGSIYIFNPDTE 263 (281)
T ss_dssp E-------SSSCEEEEE--TTEEEEECTTTC
T ss_pred C-------CCCEEEEEe--CCEEEEEECCCC
Confidence 7 888999975 478999998887
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.34 E-value=0.065 Score=58.03 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=118.5
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCC-CeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRS-GNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~-~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
..++.++.+.+ |+..++.... ...+..-..+..+.|++.++.|+++.... ..|+..++.++ .. ..+......
T Consensus 15 G~~~a~~~~g~-v~v~d~~~~~----~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-~~-~~~~~~~~~ 87 (360)
T d1k32a3 15 GDLIAFVSRGQ-AFIQDVSGTY----VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KA-EKFEENLGN 87 (360)
T ss_dssp GGCEEEEETTE-EEEECTTSSB----EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-CE-EECCCCCCS
T ss_pred CCEEEEEECCe-EEEEECCCCc----EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-cE-EEeeCCCce
Confidence 45677788888 8888775332 23344455678999999999998876554 46777787632 22 223345567
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEecCCCCceEEEEcCCCcEEEEEecCCC---CCCCCCcEEEEec
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLY---DNSPTTKIEKVYL 1166 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~---~~~~~~~I~r~~l 1166 (1332)
+..+++++.++.|..+.. .+.+.++++++... .++.........+++.|...+|.++..... .......+...++
T Consensus 88 v~~~~~spdg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~ 166 (360)
T d1k32a3 88 VFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166 (360)
T ss_dssp EEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred EEeeeecccccccceecc-ccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecc
Confidence 889999998888877654 45777888875544 345445456788999998888888753321 0112345666777
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
.+.....+.. .-....++++.+++++|++.-.
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 167 EGRKIFAATT-ENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp TTTEEEECSC-SSSBEEEEEECTTSCEEEEEES
T ss_pred ccCceeeecc-cccccccccccCCCCEEEEEeC
Confidence 7655444433 2344567889999999988743
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.11 E-value=0.22 Score=52.38 Aligned_cols=190 Identities=12% Similarity=0.118 Sum_probs=114.3
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE--
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK-- 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~-- 1124 (1332)
+.+|+|++.++.|+-.. ..+.|+..++.++.....+..........+++.+.+ .++.+.. .+.+.++++.+....
T Consensus 15 V~~l~~s~dg~~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~-d~~v~~~~~~~~~~~~~ 91 (299)
T d1nr0a2 15 ITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSW-DDHLKVVPAGGSGVDSS 91 (299)
T ss_dssp EEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEET-TTEEEEECSSSSSSCTT
T ss_pred cEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecccc-eeeEEEeccCCcccccc
Confidence 67899999877766544 678899889875543333222223356788887644 5655543 567888887654321
Q ss_pred --EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1125 --ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1125 --~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
........+..+++.|....+..+..+ .|...+. +... .+ . .-..+..+++.++++.|+... ..+
T Consensus 92 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~--------~i~~~~~-~~~~-~~-~-~~~~~~~~~~s~~~~~l~~g~-~dg 158 (299)
T d1nr0a2 92 KAVANKLSSQPLGLAVSADGDIAVAACYK--------HIAIYSH-GKLT-EV-P-ISYNSSCVALSNDKQFVAVGG-QDS 158 (299)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESS--------EEEEEET-TEEE-EE-E-CSSCEEEEEECTTSCEEEEEE-TTS
T ss_pred ccccccccccccccccccccccccccccc--------ccccccc-cccc-cc-c-ccccccccccccccccccccc-ccc
Confidence 122233568899999965555554432 2444432 2111 11 1 124566788888777777654 567
Q ss_pred eEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1203 RIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|...|+.+.....+.. ...+.+|++ .+.+.+|+.+. ..+.|...+..++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~-~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAF-----SNNGAFLVATD-QSRKVIPYSVANN 211 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEE-----CTTSSEEEEEE-TTSCEEEEEGGGT
T ss_pred ccccccccccccccccccccccccccccc-----ccccccccccc-ccccccccccccc
Confidence 89999987654333222 445677777 33455555554 5678888887665
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.38 Score=51.66 Aligned_cols=210 Identities=10% Similarity=-0.094 Sum_probs=118.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC--CCCceeeEEEec-CCeEEEEcCCCceEEEEeeCC-c
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN--DTIRDNFVIDWV-ANNIYYIDSQMHTINVARSDG-Q 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~--~~~p~glAvDw~-~~~LY~td~~~~~I~v~~ldG-~ 1121 (1332)
.+..++|++.+++|-++......|+.++.............+ ......+++.+. .+++.++-...+.|.++++.. +
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 467889999999888876443334444422222222222222 234678888764 344555656677899888752 1
Q ss_pred e---EEE-----EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1122 H---KKI-----LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1122 ~---~~~-----~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
. ... ..........|+.+|...+|..+..+. ...+.....+.......+...-...+.+++.+.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR-----DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS-----SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccc-----cceEEEEeecccccceeeeecccccccccccccccc
Confidence 1 111 111223457899999666666655443 244566666544433333322344567888888877
Q ss_pred EEEEEcCCCeEEEEecCCCce-EEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1194 LFWADSTNKRIEYCDFFGRSR-KIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~~-~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+..+-...+.|...+...... ..+.. .....+|++ .+..+.++.+-...+.|...+..++ ..+..+.
T Consensus 174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~-----~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~ 245 (325)
T d1pgua1 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF-----SPDSGEFVITVGSDRKISCFDGKSG---EFLKYIE 245 (325)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE-----CSTTCCEEEEEETTCCEEEEETTTC---CEEEECC
T ss_pred eEEEeecccccccccccccccceecccccCCCCccEEeee-----ccccceeccccccccceeeeeeccc---ccccccc
Confidence 777666777888777643222 22211 233456777 2234556666667788888887776 4444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.27 Score=50.88 Aligned_cols=200 Identities=8% Similarity=0.041 Sum_probs=116.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCC--eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCce--EEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSG--NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHT--INVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~--~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~--I~v~~ldG~~ 1122 (1332)
....+|+|.+++|.|+....+ .++..++. +...+.+. ...+.......++.+..|.+.....+. +.........
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecc-cCceeEEe-eeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence 456789999999988765443 47777766 33333333 445566777888888887765433322 2222222222
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.................+....++++.... ....|++.++++.....+... .......++.++++.|++.....+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 119 IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTSSEEEEEEECSS
T ss_pred ceeeeeccccccccccccccccceeccccc----CCceEeeeecccccceeeecc-cccccccccccccceeEEEeecCC
Confidence 222222333344445566666777765432 246799999999877655442 233344577888888888766543
Q ss_pred --eEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCC
Q psy5806 1203 --RIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1203 --~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
.|...+.++...+.+.....-...+. ++++.+|+|+.. ....|+.++..++
T Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~p~~-----SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 194 QQHIAKQDLATGGVQVLSSTFLDETPSL-----APNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp CEEEEEEETTTCCEEECCCSSSCEEEEE-----CTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ceeeeEeecccccceEeecCccccceEE-----CCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 46666666665544443111123345 446788877654 3456777887655
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.97 E-value=0.13 Score=56.94 Aligned_cols=151 Identities=12% Similarity=0.001 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCceEEEEeeCCceE-EEE-ecCCCCceEEEEcCCCcEEEEEecCCCC----CC---------CCCcEEEE
Q psy5806 1100 ANNIYYIDSQMHTINVARSDGQHK-KIL-VNDLMEPLAIAVYPRRGLLFYSHWGLYD----NS---------PTTKIEKV 1164 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~ldG~~~-~~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~----~~---------~~~~I~r~ 1164 (1332)
++.||+.|..+++|.++|++.... +++ ......|.++.+.+.....|+.+.+++. +. ..+.+..+
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 899999999999999999986543 332 2345678999886655566666544321 00 01223344
Q ss_pred ecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-------------------------------------CeEEEE
Q psy5806 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN-------------------------------------KRIEYC 1207 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~-------------------------------------~~I~~~ 1207 (1332)
+.+.....--+..+ ..|.+++++++++.+|++...+ +.+..+
T Consensus 179 D~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV 257 (459)
T d1fwxa2 179 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 257 (459)
T ss_dssp ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence 44432221112212 4577999999999999986443 223343
Q ss_pred ecC---CCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1208 DFF---GRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1208 d~d---G~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
|.. +......++ ...|.|+.+ ++++.++|++.--+..|..++..
T Consensus 258 D~~~~~~~~v~~yIPVpKsPHGV~v-----SPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPIANNPHGCNM-----APDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp ECSGG--CSSEEEEEEESSCCCEEE-----CTTSSEEEEECTTSSBEEEEEGG
T ss_pred cccccCCcceeEEEecCCCCCceEE-----CCCCCEEEEeCCcCCcEEEEEeh
Confidence 332 222233355 788999999 78899999999999999999863
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.003 Score=46.42 Aligned_cols=34 Identities=32% Similarity=0.845 Sum_probs=26.0
Q ss_pred cccCC--CCccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCA--PKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~--~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|+|+ ...|.+ .|++..++|+|.|+.||+ |++|.
T Consensus 3 ideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~Ce 40 (42)
T d2vj3a1 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCE 40 (42)
T ss_dssp CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSC
T ss_pred CccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCCc
Confidence 45665 345654 788999999999999997 66774
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=1.6 Score=46.89 Aligned_cols=212 Identities=7% Similarity=-0.004 Sum_probs=124.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
+.+++|++.++.|+... ..+.|+..+...+.... ...........+++...+..++.+. ..+.|.+.+.........
T Consensus 124 V~~l~~s~~~~~l~s~~-~dg~v~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~ 200 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLT 200 (388)
T ss_dssp EEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCCcceecc-ccccccccccccccccc-ccccccccccccccccccccccccc-cceeeeeeeccccccccc
Confidence 56888998877666554 67788888866332222 2212234567788887667776655 456788888886655543
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-------CCCcceEEEecCCCEEEEEEc
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-------LAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-------l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
......+..+++.|..+.++.+.... +.|...++........+... ......|++.++++.|+.+ .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~ 273 (388)
T d1erja_ 201 LSIEDGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-S 273 (388)
T ss_dssp EECSSCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-E
T ss_pred cccccccccccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE-E
Confidence 33445677788888777777665433 45766666543322222111 1234678888877777655 4
Q ss_pred CCCeEEEEecCCCceEE----------EEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEE
Q psy5806 1200 TNKRIEYCDFFGRSRKI----------VIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265 (1332)
Q Consensus 1200 ~~~~I~~~d~dG~~~~~----------~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~ 1265 (1332)
..+.|...|+....... ... ......+++ .+.+.+|+. -...+.|...|..++ +.+.
T Consensus 274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s-g~~dg~i~vwd~~~~---~~~~ 344 (388)
T d1erja_ 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT-----TQNDEYILS-GSKDRGVLFWDKKSG---NPLL 344 (388)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEE-----CGGGCEEEE-EETTSEEEEEETTTC---CEEE
T ss_pred CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE-----CCCCCEEEE-EeCCCEEEEEECCCC---cEEE
Confidence 56788888875332111 111 234466777 233445544 446789999998888 5555
Q ss_pred EEecCCCCeeeE
Q psy5806 1266 LIRSNQEDFLNI 1277 (1332)
Q Consensus 1266 ~~~~~~~~~~~i 1277 (1332)
.+......+..+
T Consensus 345 ~l~~H~~~V~~~ 356 (388)
T d1erja_ 345 MLQGHRNSVISV 356 (388)
T ss_dssp EEECCSSCEEEE
T ss_pred EEeCCCCCEEEE
Confidence 555444444444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=1.9 Score=45.61 Aligned_cols=232 Identities=9% Similarity=-0.006 Sum_probs=126.9
Q ss_pred ceEEEEeecceEEEEeCCCCCC-CCcccccCC--ccceEEEEEeCC-CcEEEEEeCCCCeEEEEECCCCCCceeEe----
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADL-LPVTLPFPE--YMSSIFFDYHYS-KNLIYFADMRSGNLRTFDMSDSTRIKPIP---- 1084 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~-~~~~~pi~~--~~~~~~id~d~~-~~~lY~sd~~~~~I~~~~l~~g~~~~~i~---- 1084 (1332)
..|+++.... +....++.... ......+.+ ...+..++|.|. ++.+..+-..+++|+..++..+.....+.
T Consensus 30 ~~la~~~~~~-~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~ 108 (325)
T d1pgua1 30 NAIAYPCGKS-AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK 108 (325)
T ss_dssp TEEEEEETTE-EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred CEEEEEeCCC-EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccc
Confidence 4666666554 33223332221 122222332 234679999975 44555555577888776654322221111
Q ss_pred ---ecCCCCceeeEEEecCCeEEEEcC-CCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCC
Q psy5806 1085 ---LMNDTIRDNFVIDWVANNIYYIDS-QMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTT 1159 (1332)
Q Consensus 1085 ---~~~~~~p~glAvDw~~~~LY~td~-~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~ 1159 (1332)
....+....|++...++.|..+.. ....+.+.+.+ |+....+..-.....+++++|...+++.+-... +
T Consensus 109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d------~ 182 (325)
T d1pgua1 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD------G 182 (325)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT------T
T ss_pred cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecc------c
Confidence 112234567888777777766543 34457777777 444444433334568899999777766665433 4
Q ss_pred cEEEEecCCCceEEEEecC---CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc-eEEEEe-ecc----cceEEEec
Q psy5806 1160 KIEKVYLDGSYRTVLVEED---LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS-RKIVIS-KVA----PYGLSVRQ 1230 (1332)
Q Consensus 1160 ~I~r~~ldG~~~~~l~~~~---l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~-~~~~~~-~~~----P~glav~~ 1230 (1332)
.|...++.......-.... ......+++.++.+.++.+-...+.|...|..-.. ...+.. ... .++++.
T Consensus 183 ~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-- 260 (325)
T d1pgua1 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-- 260 (325)
T ss_dssp EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE--
T ss_pred ccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeec--
Confidence 5655555433322222211 22356788888777787777778889998875333 222221 111 234444
Q ss_pred CCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1231 SPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1231 ~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.++.++.+-...+.|...+..++
T Consensus 261 -----~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 261 -----LDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp -----SSSSEEEEEETTSEEEEEETTTT
T ss_pred -----cCCCEEEEEeCCCeEEEEECCCC
Confidence 33444455557788888887776
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0049 Score=44.24 Aligned_cols=33 Identities=27% Similarity=0.779 Sum_probs=24.6
Q ss_pred ccCCCCccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 394 SHCAPKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 394 n~C~~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
|+|....|.+ .|+...++|+|.|+.||. |+.|+
T Consensus 2 d~C~~~PC~n~g~C~~~~~~y~C~C~~G~~----G~~Ce 36 (39)
T d2vj3a2 2 NECVSNPCQNDATCLDQIGEFQCICMPGYE----GVHCE 36 (39)
T ss_dssp CTTTTCCCCSSCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred cCCcCCCCCCCCEEECCCCCEEEeCCCCCc----cCcCe
Confidence 4555445543 688888999999999997 66774
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.48 E-value=1.5 Score=47.55 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=115.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeE-eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPI-PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KK 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i-~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~ 1124 (1332)
+..++|++.+..|..+ ..++.|...+++++...... +....+....|++++.++.|.-+ ...+.|.+++++... ..
T Consensus 10 It~~~~s~dg~~la~~-~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp CCEEEECTTSSEEEEE-CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEEE
T ss_pred eEEEEECCCCCEEEEE-eCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEeeccccccc
Confidence 4588999988777655 46678887776633222222 22223467899999877666544 445689999998543 32
Q ss_pred E--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE-e--cC-CCCcceEEEecCCCEEEEEE
Q psy5806 1125 I--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV-E--ED-LAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1125 ~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~-~--~~-l~~p~glaiD~~~~~LY~~d 1198 (1332)
. +......+..++++|...+|+..... ..|....++........ . .. -.....++++++++.|..+
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~- 159 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGSGS-------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG- 159 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETT-------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE-
T ss_pred ccccccccccccccccccccccceeeccc-------Ccceeeeeecccccccccccccccccccccccccccccceecc-
Confidence 3 22233458899999966666555432 33444444433322221 1 11 1235567888777666443
Q ss_pred cCCCeEEEEecCCCc----------------eEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1199 STNKRIEYCDFFGRS----------------RKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~----------------~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...+.|...+..... ...+.. .....+|++ .+.+.+|+.. ...+.|...+..++
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~s~-~~d~~i~iwd~~~~ 233 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-----SANGSRVAWV-SHDSTVCLADADKK 233 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE-----CSSSSEEEEE-ETTTEEEEEEGGGT
T ss_pred ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe-----eccccccccc-ccCCcceEEeeecc
Confidence 456677776664321 012222 233466777 2334555544 45678888887776
Q ss_pred CCcceEEEEec
Q psy5806 1259 TGQWDVHLIRS 1269 (1332)
Q Consensus 1259 ~~~~~~~~~~~ 1269 (1332)
.....+..
T Consensus 234 ---~~~~~~~~ 241 (371)
T d1k8kc_ 234 ---MAVATLAS 241 (371)
T ss_dssp ---TEEEEEEC
T ss_pred ---cceeeeec
Confidence 44444443
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0042 Score=44.67 Aligned_cols=34 Identities=26% Similarity=0.880 Sum_probs=24.9
Q ss_pred cccCCCCccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|+|....|.| .|+...++|+|.|+.||. |+.|+
T Consensus 3 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce 38 (39)
T d1edmb_ 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CCTTTTCCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred cccCCCCCCCCCcEEEcCCCCEEEECCCCCC----CCCCC
Confidence 35555555543 688888999999999996 66774
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.55 Score=48.38 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=100.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCe--EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGN--LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~--I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......+++.+++|++.....+. +..... .....................+..+.++++... ...|...++++.
T Consensus 84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~ 161 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDL--ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 161 (269)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEET--TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred ccccceecCCCCeeeEeeecCCccceeeccc--ccccceeeeeccccccccccccccccceecccccCCceEeeeecccc
Confidence 35677889998888877655443 333332 222222222223333444555666777776443 346777888876
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC-
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST- 1200 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~- 1200 (1332)
....+..........+..|....+++..... ....|...+..+...+.+... ..-...++.+++++|+|+...
T Consensus 162 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~--~~~~~p~~SPDG~~i~f~s~~~ 235 (269)
T d2hqsa1 162 APQRITWEGSQNQDADVSSDGKFMVMVSSNG----GQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQG 235 (269)
T ss_dssp CCEECCCSSSEEEEEEECTTSSEEEEEEECS----SCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEEET
T ss_pred cceeeecccccccccccccccceeEEEeecC----CceeeeEeecccccceEeecC--ccccceEECCCCCEEEEEEcCC
Confidence 5555433434456677888888877776443 346788888888776554432 222356899999999776543
Q ss_pred -CCeEEEEecCCCceEEEE
Q psy5806 1201 -NKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1201 -~~~I~~~d~dG~~~~~~~ 1218 (1332)
...|+.++++|...+.+.
T Consensus 236 ~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 236 MGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp TEEEEEEEETTSCCEEECC
T ss_pred CCcEEEEEECCCCCEEEEe
Confidence 456889999988765544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.97 E-value=0.46 Score=51.68 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=90.2
Q ss_pred EEEEeCC--CCeEEEEeCCCCceEEE--------EecCCCCCeEEEE--eCCCCeEEEEecccCcCCCCceEEEec--CC
Q psy5806 796 IYWTDMN--AQTIMVSDIDGKNAKVL--------FWLNLYRPRSIVV--HYGLGLMVWADWSRTRLTNNRIEMAHM--DG 861 (1332)
Q Consensus 796 LYwtD~~--~~~I~v~~ldG~~~~~l--------~~~~~~~P~~Iav--dp~~g~lywtd~g~~~~~~~~I~r~~~--dG 861 (1332)
++.++.. +.+|.+...++...... ....+..|.||++ ++..|.+|..-.... ++++...+ ++
T Consensus 89 ~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~----G~v~q~~l~~~~ 164 (353)
T d1h6la_ 89 AAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE----GEFEQYELNADK 164 (353)
T ss_dssp EEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS----SEEEEEEEEECT
T ss_pred EEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCC----ceEEEEEEEcCC
Confidence 4555553 45676776664432221 1234567899998 778886655443334 46665544 44
Q ss_pred CC--cEEEecc---cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC--C-CceeEEec-----cCCcceEEEEe-----
Q psy5806 862 TN--RAVFETE---VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA--T-GRAKRAYA-----VQSHPYTLTVL----- 923 (1332)
Q Consensus 862 ~~--~~~l~~~---l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d--G-~~~~~l~~-----~~~~P~~la~~----- 923 (1332)
.. ...++.. -..+.|.++|... ++||+++... .|++++++ + .....+.. -...|-|||++
T Consensus 165 ~g~v~~~lvr~f~~~~q~EGCVvDde~-~~LyisEE~~-Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~ 242 (353)
T d1h6la_ 165 NGYISGKKVRAFKMNSQTEGMAADDEY-GSLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADG 242 (353)
T ss_dssp TSSEEEEEEEEEECSSCEEEEEEETTT-TEEEEEETTT-EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGG
T ss_pred CCceeeEeeeccCCCCccceEEEeCCC-CcEEEecCcc-ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCC
Confidence 33 2334444 3456699999999 9999999864 67777664 3 33333322 13578999987
Q ss_pred CCEEEEEeCCCCEEEEEECCCC
Q psy5806 924 DYYVYWTDVQHSKIYRANKYDV 945 (1332)
Q Consensus 924 ~~~iywtD~~~~~i~~~~~~~g 945 (1332)
+++|..++...++....+....
T Consensus 243 ~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 243 KGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp CEEEEEEEGGGTEEEEEESSTT
T ss_pred CeEEEEEcCCCCeEEEEecCCC
Confidence 3589999999888877776543
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0088 Score=41.80 Aligned_cols=31 Identities=35% Similarity=0.864 Sum_probs=23.6
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|||.|++ .|++..++|+|.|+.||. |+.|+
T Consensus 5 ~~PC~ngg---~C~~~~~~y~C~C~~g~~----G~~CE 35 (35)
T d2vj3a3 5 SSPCLHNG---RCLDKINEFQCECPTGFT----GHLCQ 35 (35)
T ss_dssp TCCSTTTC---EEEECSSCEEEECCTTEE----SSSSC
T ss_pred CCCCCCCc---EEECCCCCeEEECCCCCC----CCCcC
Confidence 46677544 678888899999999997 55663
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.84 E-value=2.5 Score=45.58 Aligned_cols=173 Identities=8% Similarity=0.038 Sum_probs=100.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
.+.+|+|++.++.|.-.. ..+.|+..++.++.....+...+ ...+..+++++.++.|+... ..+.|.+.+++....
T Consensus 53 ~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~ 130 (371)
T d1k8kc_ 53 QVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDW 130 (371)
T ss_dssp CEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTE
T ss_pred CEEEEEECCCCCEEEEEE-CCCeEEEEeecccccccccccccccccccccccccccccceeec-ccCcceeeeeeccccc
Confidence 467999999988776554 56788887776444333333222 34678899988888787665 445788888764322
Q ss_pred EE---EecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc----------------eEEEE--ecCCCC
Q psy5806 1124 KI---LVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY----------------RTVLV--EEDLAF 1181 (1332)
Q Consensus 1124 ~~---~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~----------------~~~l~--~~~l~~ 1181 (1332)
.. .... ......++++|...+| .+.... ..|...++.... ...+. ......
T Consensus 131 ~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~D------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (371)
T d1k8kc_ 131 WVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203 (371)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEE-EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred ccccccccccccccccccccccccce-eccccC------cEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence 11 2222 2356889999955454 443222 234333332211 01111 112234
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEE
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSV 1228 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav 1228 (1332)
..++++++++++|+.+. ..+.|...|+........+. .....+|++
T Consensus 204 v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~f 251 (371)
T d1k8kc_ 204 VHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLAVTF 251 (371)
T ss_dssp EEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred EEEEEeecccccccccc-cCCcceEEeeecccceeeeecccccceeeee
Confidence 67889999888887764 56789888886443322222 223356666
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.78 E-value=0.006 Score=43.25 Aligned_cols=30 Identities=20% Similarity=0.578 Sum_probs=22.4
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCc
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC 429 (1332)
.|||.|++ .|+...++|+|.|+.||+ |+.|
T Consensus 7 ~~PC~ngg---~C~~~~~~y~C~C~~g~~----G~~C 36 (37)
T d2c4fl1 7 SSPCQNGG---SCKDQLQSYICFCLPAFE----GRNC 36 (37)
T ss_dssp GCCCCTTC---EEEEETTEEEEECCTTEE----STTS
T ss_pred CCCCCCCC---EEECCCCCeEEECCCCCc----CCCC
Confidence 45666443 577788899999999997 5566
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.012 Score=42.08 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=23.7
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.+||+|++ .|+...++|+|.|+.||. |+.|+
T Consensus 5 ~~PC~ngg---~C~~~~~~y~C~C~~G~~----G~~Ce 35 (39)
T d1xkba1 5 TSPCQNQG---KCKDGLGEYTCTCLEGFE----GKNCE 35 (39)
T ss_dssp TCCCCSSC---EECCCSSSCCEECCTTEE----TTTTC
T ss_pred CCCCCCCc---EEECCCCCEEEECCCCCC----cCcCe
Confidence 36666443 477888899999999997 67784
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.011 Score=44.38 Aligned_cols=34 Identities=29% Similarity=0.856 Sum_probs=25.1
Q ss_pred cccCCCCccee-eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~Csh-lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|+|.+..|.| .|+...++|+|.|+.||. |+.|.
T Consensus 8 ~~~C~~~PC~nG~C~~~~~~y~C~C~~G~~----G~~Ce 42 (48)
T d1autl1 8 EHPCASLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQ 42 (48)
T ss_dssp CCSSSSTTTTSEEECCCSSCCCEEECTTEE----STTSC
T ss_pred CCcccCCCCCCCEEECCCCCCeEeCCCCCc----CCCcc
Confidence 34555444433 578888999999999997 77885
|
| >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.013 Score=40.90 Aligned_cols=32 Identities=28% Similarity=0.788 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCccceeccCCCCceeeCCCCCCC
Q psy5806 1287 TWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEP 1321 (1332)
Q Consensus 1287 ~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~ 1321 (1332)
...||...| |++-|.+.+ .++|.|.|+.||.+
T Consensus 3 ~vDPCf~~~--CE~qCqP~~-~~~Y~CiCaeGFaP 34 (43)
T d1dx5i1 3 PVDPCFRAN--CEYQCQPLD-QTSYLCVCAEGFAP 34 (43)
T ss_dssp CCCGGGGCC--CSSEEEECS-SSCEEEECCTTEEE
T ss_pred ccccccCCC--cceeeeeCC-CCcceEEecccccc
Confidence 357999776 999999995 68899999999943
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.11 E-value=0.015 Score=41.90 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=22.3
Q ss_pred eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 404 ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 404 lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|.+.+++|+|.|+.||. -||++|.
T Consensus 14 ~C~Nt~Gsy~C~C~~Gy~--GdG~~C~ 38 (40)
T d1gl4a2 14 ECRDYATGFCCRCVANYT--GNGRQCV 38 (40)
T ss_dssp EEEECSSCEEEEECTTEE--ECSSSEE
T ss_pred EeecCCCCeEeECCCCCc--CCCCEee
Confidence 688999999999999998 4788885
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.92 E-value=0.0085 Score=43.14 Aligned_cols=27 Identities=26% Similarity=0.650 Sum_probs=23.6
Q ss_pred cccccCCCCccccCCCCeeEccCCccccc
Q psy5806 981 HLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 981 hlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
..|.+++++|+|.|+.||. .|+++|++
T Consensus 13 A~C~Nt~Gsy~C~C~~Gy~--GdG~~C~~ 39 (40)
T d1gl4a2 13 AECRDYATGFCCRCVANYT--GNGRQCVA 39 (40)
T ss_dssp EEEEECSSCEEEEECTTEE--ECSSSEEE
T ss_pred CEeecCCCCeEeECCCCCc--CCCCEeeC
Confidence 3699999999999999998 57899974
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.026 Score=40.67 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=24.1
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|||.|++ .|+...++|+|.|+.||. |+.|..
T Consensus 6 ~~pC~ngg---~C~~~~~~y~C~C~~g~~----G~~Ce~ 37 (40)
T d1g1sa2 6 DMSCSKQG---ECLETIGNYTCSCYPGFY----GPECEY 37 (40)
T ss_dssp TTGGGGSE---EEEECSSSEEEEECTTEE----STTSCE
T ss_pred CCcCCCCc---EEECCCCCeEEeCCCCcc----CCCCCC
Confidence 35666443 577888999999999997 667853
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.81 E-value=6 Score=40.37 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCC-CceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCce
Q psy5806 776 LVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDG-KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRI 854 (1332)
Q Consensus 776 vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG-~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I 854 (1332)
++......+..||+.+.++.|+ +-+..++|.+.++.. +..+++.........++++.|. |.++.+... ..+
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~-s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~~d------~~v 78 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSWD------DHL 78 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEETT------TEE
T ss_pred EcCCCCCCcEEEEECCCCCEEE-EEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeecccce------eeE
Confidence 3444455677888887776554 444566899988854 3333321111234578889886 677665532 346
Q ss_pred EEEecCCCCcE---EEecc-cccCceeEEeCCCCCeEEEEe
Q psy5806 855 EMAHMDGTNRA---VFETE-VIWPSCLAIDYSDNPKLYWVD 891 (1332)
Q Consensus 855 ~r~~~dG~~~~---~l~~~-l~~P~gl~iD~~~~~~lYw~d 891 (1332)
......++... .+... -..+.++++...+ ..+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~ 118 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAAC 118 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEE
T ss_pred EEeccCCcccccccccccccccccccccccccc-ccccccc
Confidence 55555544321 11122 4456677777766 5555443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.73 E-value=3.5 Score=41.81 Aligned_cols=113 Identities=16% Similarity=0.023 Sum_probs=68.7
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC---C--CceEEEEeeCCceEEEEec--
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS---Q--MHTINVARSDGQHKKILVN-- 1128 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~---~--~~~I~v~~ldG~~~~~~~~-- 1128 (1332)
+++|.|+. .+.|+.+++. ++..+.+. .+.+...+.++.+.++.|+|+.. . ...|.+.++++...+.+..
T Consensus 12 G~~v~f~~--~~dl~~~d~~-~g~~~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~ 87 (281)
T d1k32a2 12 GDRIIFVC--CDDLWEHDLK-SGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS 87 (281)
T ss_dssp TTEEEEEE--TTEEEEEETT-TCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred CCEEEEEe--CCcEEEEECC-CCCEEEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence 45566553 3457777776 43444443 34445567788888999888632 1 1357788888765544321
Q ss_pred -----CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE
Q psy5806 1129 -----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV 1173 (1332)
Q Consensus 1129 -----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~ 1173 (1332)
.......++..|....|+++.... .......+..++.++...+.
T Consensus 88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 136 (281)
T d1k32a2 88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQ-PFSSMTCLYRVENDGINFVP 136 (281)
T ss_dssp EEEETTEECSEEEEECTTCCEEEEECTTS-SSTTCCEEEEEEGGGTEEEE
T ss_pred CCccCccccccccccCCCCCEEEEEEccC-CCccceeeeeecCCCceeEE
Confidence 112456788999888899987553 11123456777777766543
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.028 Score=40.19 Aligned_cols=31 Identities=23% Similarity=0.748 Sum_probs=23.7
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.|||.|++ .|+...++|+|.|+.||. |+.|+
T Consensus 6 ~~pC~ngg---~C~~~~~~~~C~C~~g~~----G~~Ce 36 (39)
T d1g1ta2 6 NTSCSGHG---ECVETINNYTCKCDPGFS----GLKCE 36 (39)
T ss_dssp TTGGGGSE---EEEEETTEEEEEECTTEE----STTSC
T ss_pred CCcCCCCc---EEECCCCCEEEeCCCCCc----CcCcC
Confidence 35666443 677888999999999997 66774
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.039 Score=39.94 Aligned_cols=32 Identities=34% Similarity=0.750 Sum_probs=23.2
Q ss_pred cccCCCCcceeeecc--CCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSHICLP--NKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~--~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|||.||+ .|++ ..++|+|.||.||. |..|+.
T Consensus 3 ~nPC~ngG---~C~~~~~~~~y~C~C~~g~~----G~~Ce~ 36 (41)
T d1tpga1 3 EPRCFNGG---TCQQALYFSDFVCQCPEGFA----GKSCEI 36 (41)
T ss_dssp SCCSCTTC---EEEEESSSSCEEEECCTTCB----SSSCCB
T ss_pred CCCCCCCC---EEecCCCCCCeEECCCCCCC----CCCcCc
Confidence 58899654 4444 34589999999997 678853
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.39 E-value=6.4 Score=39.72 Aligned_cols=243 Identities=10% Similarity=-0.002 Sum_probs=123.0
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
++|+.+..+..|+.-++...... ..+.+ ...+.++++++.+..++... ..+.+...+.... .............
T Consensus 30 ~~l~s~s~Dg~i~iWd~~~~~~~---~~~~~h~~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 104 (317)
T d1vyhc1 30 SVMVSASEDATIKVWDYETGDFE---RTLKGHTDSVQDISFDHSGKLLASCS-ADMTIKLWDFQGF-ECIRTMHGHDHNV 104 (317)
T ss_dssp SEEEEEESSSCEEEEETTTCCCC---EEECCCSSCEEEEEECTTSSEEEEEE-TTSCCCEEETTSS-CEEECCCCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCCEE---EEEeCCCCcEEEEeeecccccccccc-ccccccccccccc-ccccccccccccc
Confidence 45555444433666666543322 22222 23467899998887776655 4455555554422 1212221223345
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
..+++...++.|... ...+.+.+.++. +.....+.........++++|...+|+..... +.|...++....
T Consensus 105 ~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------~~v~~~~~~~~~ 176 (317)
T d1vyhc1 105 SSVSIMPNGDHIVSA-SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------QTVRVWVVATKE 176 (317)
T ss_dssp EEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCC
T ss_pred eeeeccCCCceEEee-ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC-------CeEEEEeeccce
Confidence 667777666666544 445678888887 44444454445567889999865555444322 345555554333
Q ss_pred eEEEEecCCCCcceEEEec-------------------CCCEEEEEEcCCCeEEEEecCCCc-eEEEEe-ecccceEEEe
Q psy5806 1171 RTVLVEEDLAFPNELAIDF-------------------KQRRLFWADSTNKRIEYCDFFGRS-RKIVIS-KVAPYGLSVR 1229 (1332)
Q Consensus 1171 ~~~l~~~~l~~p~glaiD~-------------------~~~~LY~~d~~~~~I~~~d~dG~~-~~~~~~-~~~P~glav~ 1229 (1332)
....+...-.....+++.+ ..+.+..+-...+.|...++.... ...+.. .....++++
T Consensus 177 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~- 255 (317)
T d1vyhc1 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF- 255 (317)
T ss_dssp EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-
T ss_pred eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE-
Confidence 2222211111111222211 122333444455677776765332 222222 334456777
Q ss_pred cCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1230 QSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1230 ~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
.+.+.+|+ +-...+.|...+..++ +.+..+......+..+
T Consensus 256 ----~~~~~~l~-s~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~~ 295 (317)
T d1vyhc1 256 ----HSGGKFIL-SCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSL 295 (317)
T ss_dssp ----CSSSSCEE-EEETTTEEEEECCTTS---CCCEEEECCSSCEEEE
T ss_pred ----CCCCCEEE-EEECCCeEEEEECCCC---cEEEEEcCCCCCEEEE
Confidence 22334444 4446688888888777 5555555433444443
|
| >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.043 Score=38.31 Aligned_cols=33 Identities=24% Similarity=0.638 Sum_probs=28.2
Q ss_pred cccCCCCcceeeeccCCC-ceEEeCCCCceecCC
Q psy5806 393 QSHCAPKVCSHICLPNKH-RFTCQCPLGLTLSPD 425 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~-~~~C~C~~G~~L~~d 425 (1332)
.+||....|.+.|.+... +|+|.|.+||.-.+|
T Consensus 4 vDPCf~~~CE~qCqP~~~~~Y~CiCaeGFaP~p~ 37 (43)
T d1dx5i1 4 VDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPH 37 (43)
T ss_dssp CCGGGGCCCSSEEEECSSSCEEEECCTTEEEETT
T ss_pred cccccCCCcceeeeeCCCCcceEEeccccccCCC
Confidence 478988889999999765 999999999986654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.22 E-value=6.7 Score=39.56 Aligned_cols=156 Identities=7% Similarity=0.029 Sum_probs=94.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+.+|+|++.++.|.-+ ..+++|+..++.++....++. .....+..++++..+..+..... ...+...+........
T Consensus 19 ~I~~l~~sp~~~~l~s~-s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 95 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSA-SEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSA-DMTIKLWDFQGFECIR 95 (317)
T ss_dssp CEEEEEECSSSSEEEEE-ESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEET-TSCCCEEETTSSCEEE
T ss_pred CeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeeccccccccccc-cccccccccccccccc
Confidence 46789999987766544 467889999988665444432 33446788888876666655443 3344445554333332
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
+.........+++.|....|+..... ..+...++........+.........+++++++..|..+ ...+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~v 167 (317)
T d1vyhc1 96 TMHGHDHNVSSVSIMPNGDHIVSASRD-------KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC-SNDQTV 167 (317)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSCE
T ss_pred ccccccccceeeeccCCCceEEeeccC-------cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE-eCCCeE
Confidence 33334566778888876666555432 345555665444433343334556677888776666554 355677
Q ss_pred EEEecCCC
Q psy5806 1205 EYCDFFGR 1212 (1332)
Q Consensus 1205 ~~~d~dG~ 1212 (1332)
...+....
T Consensus 168 ~~~~~~~~ 175 (317)
T d1vyhc1 168 RVWVVATK 175 (317)
T ss_dssp EEEETTTC
T ss_pred EEEeeccc
Confidence 77776543
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.05 Score=36.69 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=22.6
Q ss_pred ccccCCCCcceeeeccCCCceEEeCCCCceec
Q psy5806 392 YQSHCAPKVCSHICLPNKHRFTCQCPLGLTLS 423 (1332)
Q Consensus 392 ~~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~ 423 (1332)
.-|||.||.|+ |..++|.|+|.+||.-.
T Consensus 6 ignpCGnGTCt----NviGgFec~C~~GFepg 33 (39)
T d1emoa2 6 VGNPCGNGTCK----NVIGGFECTCEEGFEPG 33 (39)
T ss_dssp TTCSSSSSCEE----ECSSSEEECCSSSSCCC
T ss_pred cCCccCCceee----ecccceEEeecCCcCCC
Confidence 35788888664 77899999999999744
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.046 Score=39.80 Aligned_cols=23 Identities=26% Similarity=0.696 Sum_probs=19.9
Q ss_pred ccccCCCCccccCCCCeeEccCCcccc
Q psy5806 982 LCLRNPTNFTCACPTGILLSADRRSCF 1008 (1332)
Q Consensus 982 lCl~~p~~~~C~Cp~g~~l~~d~~tC~ 1008 (1332)
.|..++++|+|.||.||. |++|.
T Consensus 18 ~C~n~~g~y~C~C~~G~~----G~~Ce 40 (42)
T d2vj3a1 18 KCINTLGSFECQCLQGYT----GPRCE 40 (42)
T ss_dssp EEEECSSSEEEECCTTEE----STTSC
T ss_pred EeECCCCCEEeECCCCCc----CCCCc
Confidence 678999999999999997 56775
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.077 Score=38.30 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccccccccC
Q psy5806 1287 TWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECFEGIQA 1331 (1332)
Q Consensus 1287 ~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~~~~~~ 1331 (1332)
..|||... | .|+......+|+|.|+.||.+. .|..++++
T Consensus 2 ~~nPC~ng-G----~C~~~~~~~~y~C~C~~g~~G~-~Ce~~~~~ 40 (41)
T d1tpga1 2 SEPRCFNG-G----TCQQALYFSDFVCQCPEGFAGK-SCEIDTRA 40 (41)
T ss_dssp SSCCSCTT-C----EEEEESSSSCEEEECCTTCBSS-SCCBCSSC
T ss_pred cCCCCCCC-C----EEecCCCCCCeEECCCCCCCCC-CcCcCcCC
Confidence 46899953 3 5665432457999999999885 99877764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=9.7 Score=40.23 Aligned_cols=195 Identities=9% Similarity=-0.005 Sum_probs=107.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-----------------CCCCceeeEEEecCCeEEEEcCC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-----------------NDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-----------------~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
+..++|++.++.|... ..++|...++.++.....+... .......|++.+.++.|..+ ..
T Consensus 65 V~~l~fs~dg~~lasg--~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~-~~ 141 (388)
T d1erja_ 65 VCCVKFSNDGEYLATG--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-AE 141 (388)
T ss_dssp CCEEEECTTSSEEEEE--CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE-ET
T ss_pred EEEEEECCCCCEEEEE--eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec-cc
Confidence 5688899887765443 3677888887654433222110 11135678888766666544 45
Q ss_pred CceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEe
Q psy5806 1110 MHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAID 1188 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD 1188 (1332)
.+.|.+.+........ ..........++..+....++.+... +.|...++.......... ....+..+.+.
T Consensus 142 dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~ 213 (388)
T d1erja_ 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 213 (388)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-------eeeeeeeccccccccccc-ccccccccccc
Confidence 6688888887443333 43334567889999977777666543 356666666554433333 22334445555
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCC-ceEEEEe--------ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGR-SRKIVIS--------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~-~~~~~~~--------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.++.+..+-...+.|...+.... ....+.. .....+|++ .+.+.+|+ +-...+.|...+..++
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----s~~~~~l~-s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-----TRDGQSVV-SGSLDRSVKLWNLQNA 286 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE-----CTTSSEEE-EEETTSEEEEEEC---
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE-----CCCCCEEE-EEECCCcEEEEeccCC
Confidence 545555555556677888777633 2222221 122356666 22233443 4445667777665544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.06 E-value=12 Score=38.36 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=110.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee--cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL--MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~--~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+..++|++.++.++... ..+.|...+............ .+...............+..... ..............
T Consensus 99 ~v~~v~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 176 (340)
T d1tbga_ 99 WVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQ 176 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEET-TTEEEEEETTTTEE
T ss_pred cEEeeEeeccceeeeeec-ccceeecccccccccccccceecccccccccccccccccccccccc-cccccccccccccc
Confidence 467899999988777765 566777776553322222111 11112222223323344433333 23333333333322
Q ss_pred EE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 KI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.. ..........+...+ .+.++.+.... +.|...++........+...-...+.|+++++++.|+.+ ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~ 248 (340)
T d1tbga_ 177 TTTFTGHTGDVMSLSLAP-DTRLFVSGACD------ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDA 248 (340)
T ss_dssp EEEEECCSSCEEEEEECT-TSSEEEEEETT------TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTS
T ss_pred cccccccceeEeeecccc-ccceeEEeecC------ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCC
Confidence 22 222323344555555 44444444332 456666665444333333233456788998877766655 4667
Q ss_pred eEEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1203 RIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
.|...++.......... ......+++ .+.+.+| ++-...+.|...+..++ .....+......+..|
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l-~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l 318 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSF-----SKSGRLL-LAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEE-----CSSSCEE-EEEETTSCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred eEEEEeecccccccccccccccCceEEEEE-----CCCCCEE-EEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEE
Confidence 88888887554433333 233456676 2233444 44456788999998777 5555554333333333
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.075 Score=35.84 Aligned_cols=27 Identities=41% Similarity=1.100 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCccceeccCCCCceeeCCCCCCCCc
Q psy5806 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNE 1323 (1332)
Q Consensus 1289 n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~ 1323 (1332)
|||. ||.|.. . .++++|+|.+||+++.
T Consensus 8 npCG--nGTCtN----v--iGgFec~C~~GFepgp 34 (39)
T d1emoa2 8 NPCG--NGTCKN----V--IGGFECTCEEGFEPGP 34 (39)
T ss_dssp CSSS--SSCEEE----C--SSSEEECCSSSSCCCS
T ss_pred CccC--Cceeee----c--ccceEEeecCCcCCCc
Confidence 8887 676765 3 3679999999998763
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.68 E-value=16 Score=37.07 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=73.6
Q ss_pred cCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec
Q psy5806 1099 VANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE 1177 (1332)
Q Consensus 1099 ~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~ 1177 (1332)
....++++....+.|.++++. ++....+..-......|+++|...+|+... .. +.|...++...........
T Consensus 194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d------~~i~~~~~~~~~~~~~~~~ 266 (340)
T d1tbga_ 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DD------ATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TT------SCEEEEETTTTEEEEEECC
T ss_pred cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CC------CeEEEEeeccccccccccc
Confidence 455666666667788888886 444444543345678999999554554433 32 4677777766554444332
Q ss_pred C--CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--ecccceEEE
Q psy5806 1178 D--LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSV 1228 (1332)
Q Consensus 1178 ~--l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~--~~~P~glav 1228 (1332)
. ......++++++++.|+.+ ...+.|...|+........+. .....+|++
T Consensus 267 ~~~~~~i~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~ 320 (340)
T d1tbga_ 267 DNIICGITSVSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp TTCCSCEEEEEECSSSCEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEE-ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 2 2234567888777666654 456789988886443322222 444567777
|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.27 E-value=0.16 Score=36.50 Aligned_cols=31 Identities=19% Similarity=0.763 Sum_probs=20.6
Q ss_pred cccCCCCcceeeeccC-CCceEEeCC-CCceecCCCCCcC
Q psy5806 393 QSHCAPKVCSHICLPN-KHRFTCQCP-LGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~-~~~~~C~C~-~G~~L~~d~~tC~ 430 (1332)
.|||+|++ .|+.. .++|+|.|+ .||. |+.|+
T Consensus 6 ~~PC~ngG---~C~~~~~~~y~C~C~~~gy~----G~~Ce 38 (41)
T d1cvua2 6 SNPCQNRG---ECMSTGFDQYKCDCTRTGFY----GENCT 38 (41)
T ss_dssp TCCCCTTC---EEEEEETTEEEEECTTSSEE----TTTTC
T ss_pred CCCCCCCC---EEEECCCCCEEEeCcCCCcC----CcCcC
Confidence 35666432 55553 468999998 5996 66774
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.79 E-value=27 Score=38.59 Aligned_cols=251 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred ccCcceEEEEeecceEEEEeCCCCCCCCcccccCCc----------------cceEEEEEeCCCcEEEEEeCCCC-----
Q psy5806 1009 SRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEY----------------MSSIFFDYHYSKNLIYFADMRSG----- 1067 (1332)
Q Consensus 1009 ~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~----------------~~~~~id~d~~~~~lY~sd~~~~----- 1067 (1332)
+.....|.|+..+. |..++.........+..-..- ....++.++|.+++|.+.-....
T Consensus 122 SPDG~~iafv~~~n-l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~ 200 (465)
T d1xfda1 122 GPKGQQLIFIFENN-IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM 200 (465)
T ss_dssp CSSTTCEEEEETTE-EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred ccCCceEEEEecce-EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccccee
Q ss_pred ----------------------------eEEEEECCCCCCceeEeecCCCCceee---EEEe-cCCeEEEE----cCCCc
Q psy5806 1068 ----------------------------NLRTFDMSDSTRIKPIPLMNDTIRDNF---VIDW-VANNIYYI----DSQMH 1111 (1332)
Q Consensus 1068 ----------------------------~I~~~~l~~g~~~~~i~~~~~~~p~gl---AvDw-~~~~LY~t----d~~~~ 1111 (1332)
++..+++++++................ .+.| ..+++|+. +....
T Consensus 201 ~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~ 280 (465)
T d1xfda1 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (465)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred ecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccc
Q ss_pred eEEEEeeC-CceEEEEecCCC-----CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEE-------ecCCCceEEEEecC
Q psy5806 1112 TINVARSD-GQHKKILVNDLM-----EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV-------YLDGSYRTVLVEED 1178 (1332)
Q Consensus 1112 ~I~v~~ld-G~~~~~~~~~~~-----~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~-------~ldG~~~~~l~~~~ 1178 (1332)
.|.+++.. |+.+.++..... ......+.|....++|..... ......++.+ +.+|...+.|...+
T Consensus 281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se--~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~ 358 (465)
T d1xfda1 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGD 358 (465)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeee--ecccCceEEEEeccccccCCCceeEEeccCC
Q ss_pred CCCcceEEEecCCCEEEEE----EcCCCeEEEEecCCCceEEEEe-eccc----ceEEEecCCccccccEEEEEEC--CC
Q psy5806 1179 LAFPNELAIDFKQRRLFWA----DSTNKRIEYCDFFGRSRKIVIS-KVAP----YGLSVRQSPGKAFIVELYWTDW--EA 1247 (1332)
Q Consensus 1179 l~~p~glaiD~~~~~LY~~----d~~~~~I~~~d~dG~~~~~~~~-~~~P----~glav~~~~~~~~~~~lYwtd~--~~ 1247 (1332)
..--.-+++|.+++.||++ +.....+.+++++|+.....+. .... +..++ ++.+.++..+-. ..
T Consensus 359 w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~-----S~~~~y~v~~~s~~~~ 433 (465)
T d1xfda1 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASF-----SHSMDFFLLKCEGPGV 433 (465)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEE-----CTTSSEEEEECCSSSS
T ss_pred ceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEE-----CCCCCEEEEEeecCCC
Q ss_pred CEEEEEEecCCCCcceEEEEecC
Q psy5806 1248 MSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1248 ~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
-.+...+..++ +.+.++..|
T Consensus 434 P~~~~~~~~~~---~~~~~Le~N 453 (465)
T d1xfda1 434 PMVTVHNTTDK---KKMFDLETN 453 (465)
T ss_dssp CCEEEEETTTC---CEEEEEECC
T ss_pred CeEEEEECCCC---CEEEEEcCC
|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heregulin-alpha, EGF-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.25 Score=39.26 Aligned_cols=35 Identities=29% Similarity=0.737 Sum_probs=27.4
Q ss_pred ccccCCC-Ccceeee-ccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCAP-KVCSHIC-LPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~~-g~CshlC-l~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
..|+|.| |.|..+- +...++|.|.|+.||. |+.|.
T Consensus 10 ~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~----G~~Ce 46 (63)
T d1haea_ 10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCT 46 (63)
T ss_dssp HHTTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSC
T ss_pred cCCcCCCCCEEeecccccCCCCEEeECCCCCC----CCCcC
Confidence 3688996 5687654 5667799999999997 77885
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.27 E-value=0.087 Score=37.55 Aligned_cols=36 Identities=22% Similarity=0.545 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccccccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECFEGI 1329 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~~~~ 1329 (1332)
...|||..+ | .|+.. .++|+|.|+.||.+. .|.+.|
T Consensus 4 C~~~pC~ng-g----~C~~~--~~~~~C~C~~g~~G~-~Ce~~v 39 (39)
T d1g1ta2 4 CTNTSCSGH-G----ECVET--INNYTCKCDPGFSGL-KCEQIV 39 (39)
T ss_dssp CCTTGGGGS-E----EEEEE--TTEEEEEECTTEEST-TSCEEC
T ss_pred ccCCcCCCC-c----EEECC--CCCEEEeCCCCCcCc-CcCccC
Confidence 456888843 3 56666 467999999999885 898765
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=85.83 E-value=0.17 Score=36.68 Aligned_cols=31 Identities=26% Similarity=0.776 Sum_probs=21.3
Q ss_pred cccCCCCcceeeecc-CCCceEEeCCC-CceecCCCCCcC
Q psy5806 393 QSHCAPKVCSHICLP-NKHRFTCQCPL-GLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~-~~~~~~C~C~~-G~~L~~d~~tC~ 430 (1332)
.|||+|++ .|+. ..++|+|.|+. ||. |+.|+
T Consensus 7 ~nPC~ngG---~C~~~~~~~y~C~C~~~G~~----G~~Ce 39 (42)
T d1q4ga2 7 YYPCQHQG---ICVRFGLDRYQCDCTRTGYS----GPNCT 39 (42)
T ss_dssp GCCCCTTC---EEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred CCCCCCCC---EeeeCCCCCEEEECCCCCcC----CcCcC
Confidence 46777432 4554 35699999985 996 66785
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.75 E-value=0.32 Score=37.05 Aligned_cols=34 Identities=32% Similarity=0.881 Sum_probs=23.5
Q ss_pred ccccCCC-CcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 392 YQSHCAP-KVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 392 ~~n~C~~-g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
..++|.| |.|..+ ....+|+|.||.||. |..|+.
T Consensus 10 ~~~~C~NgG~C~~~--~~~~~~~C~C~~gy~----G~~Ce~ 44 (53)
T d3egfa_ 10 YDGYCLNGGVCMHI--ESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp SSCCSCSSCEEEEE--SSSSCEEEECCTTCC----SSSSCC
T ss_pred CCCCCCCCcEeecc--CCCCCeEeECCCCCc----CCCCcc
Confidence 4577875 545422 344599999999996 678864
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.13 Score=38.46 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=28.3
Q ss_pred CCCCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccccccccC
Q psy5806 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECFEGIQA 1331 (1332)
Q Consensus 1284 ~q~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~~~~~~ 1331 (1332)
.+...|||. ||.|. .. .++|+|.|+.||.+. .|...|+.
T Consensus 9 ~~C~~~PC~--nG~C~----~~--~~~y~C~C~~G~~G~-~Ce~~I~~ 47 (48)
T d1autl1 9 HPCASLCCG--HGTCI----DG--IGSFSCDCRSGWEGR-FCQREVSF 47 (48)
T ss_dssp CSSSSTTTT--SEEEC----CC--SSCCCEEECTTEEST-TSCEECCS
T ss_pred CcccCCCCC--CCEEE----CC--CCCCeEeCCCCCcCC-CcccccCc
Confidence 346678885 35554 44 457999999999875 99988863
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.29 E-value=22 Score=36.14 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=111.6
Q ss_pred cccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe
Q psy5806 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP 1084 (1332)
Q Consensus 1006 tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~ 1084 (1332)
+|......+|+....+..|+--++.... .+..+.+ -..+.+|+|.+. +.|+ +-...+.|+..++..........
T Consensus 17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~l~~s~~-~~l~-s~s~D~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 17 TCLQFEDNYVITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHG-GILV-SGSTDRTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp EEEEEETTEEEEEETTTEEEEEETTTTE---EEEEEECCSSCEEEEEEETT-TEEE-EEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCEEEEEeCCCeEEEEECCCCc---EEEEEECCCCCEEEEEEcCC-CEEE-EEecccccccccccccccccccc
Confidence 4553334455555554435555654322 1222222 234678999874 4544 44477888888866332222221
Q ss_pred ecCCCCceeeEE-EecCCeEEEEcCCCceEEEEeeCCceEEE-E----------ecCCCCce-----------EEEEcCC
Q psy5806 1085 LMNDTIRDNFVI-DWVANNIYYIDSQMHTINVARSDGQHKKI-L----------VNDLMEPL-----------AIAVYPR 1141 (1332)
Q Consensus 1085 ~~~~~~p~glAv-Dw~~~~LY~td~~~~~I~v~~ldG~~~~~-~----------~~~~~~P~-----------~iavdp~ 1141 (1332)
........... ........++-...+.|.++++....... . ......+. -.+..+.
T Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (355)
T d1nexb2 92 -GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170 (355)
T ss_dssp -CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE
T ss_pred -cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc
Confidence 12222222222 22233333444456678888876432211 0 00000111 1112222
Q ss_pred CcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--
Q psy5806 1142 RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-- 1219 (1332)
Q Consensus 1142 ~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-- 1219 (1332)
...++.... . ..|...++..................+.+++.++.++.. ...+.|...++..........
T Consensus 171 ~~~~~~~~~-d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 171 GNIVVSGSY-D------NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp TTEEEEEET-T------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTCCEEEEECCC
T ss_pred cceeeeecc-c------ceeeeeecccccceeeeeccccccccccccccceeeecc-cccceEEeeeccccccccccccc
Confidence 223333322 1 356666665444333333334555677888877777665 456778888886444333332
Q ss_pred ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.....+++. .+++|+. -...+.|...+..++
T Consensus 243 ~~~v~~~~~-------~~~~l~~-~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 243 TALVGLLRL-------SDKFLVS-AAADGSIRGWDANDY 273 (355)
T ss_dssp SSCCCEEEE-------CSSEEEE-ECTTSEEEEEETTTC
T ss_pred ccccccccc-------ccceeee-eeccccccccccccc
Confidence 334456677 5555544 446678888776655
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.10 E-value=0.23 Score=35.23 Aligned_cols=36 Identities=25% Similarity=0.534 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccccccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECFEGI 1329 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~~~~ 1329 (1332)
...|||.. +|.| +.. ..+|+|.|+.||.+. .|.-++
T Consensus 3 C~~~PC~n-gg~C----~~~--~~~y~C~C~~G~~G~-~Cei~~ 38 (39)
T d1xkba1 3 CETSPCQN-QGKC----KDG--LGEYTCTCLEGFEGK-NCELFT 38 (39)
T ss_dssp TTTCCCCS-SCEE----CCC--SSSCCEECCTTEETT-TTCEES
T ss_pred CCCCCCCC-CcEE----ECC--CCCEEEECCCCCCcC-cCeEcc
Confidence 45689984 3554 444 457999999999885 886543
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.26 Score=36.71 Aligned_cols=33 Identities=24% Similarity=0.697 Sum_probs=23.1
Q ss_pred ccccCCC-CcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCAP-KVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~~-g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
..++|.| |.|..+ +..++|+|.|+.||+ |..|+
T Consensus 8 ~~~~C~ngG~C~~~--~~~~~~~C~C~~gy~----G~~Ce 41 (48)
T d1nqlb_ 8 HDGYCLHDGVCMYI--EALDKYACNCVVGYI----GERCQ 41 (48)
T ss_dssp TCCEECTTCEEEEE--TTTTEEEEEECTTEE----STTSC
T ss_pred CCCCCCCCcEEeee--CCCCCeEEeCCCCcc----cCCCC
Confidence 3577775 445442 334589999999998 66885
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=83.39 E-value=8.8 Score=42.02 Aligned_cols=164 Identities=13% Similarity=-0.000 Sum_probs=90.0
Q ss_pred CCccceEEEEEeCCC-cEEEEEeCCCCeEEEEECCCCCCceeEeecC-------CCCceeeEEEecC-CeEEEEcCC---
Q psy5806 1042 PEYMSSIFFDYHYSK-NLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-------DTIRDNFVIDWVA-NNIYYIDSQ--- 1109 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~-~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-------~~~p~glAvDw~~-~~LY~td~~--- 1109 (1332)
.+...+.+|+++|.+ +.||... ..+-|+|-. + +...-+.+... ......||||+.. +.||+.-..
T Consensus 9 ~~gg~~~~i~~~P~~~~~~ya~~-~~gGv~~S~-d-gG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~ 85 (427)
T d2ebsa1 9 GGGGYITGIVAHPKTKDLLYART-DIGGAYRWD-A-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 85 (427)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEE-SSSCEEEEE-T-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCCcEEEEEECCCCCCEEEEEe-cCCCEEEEE-C-CCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence 345567899999876 5566544 445577665 4 54444332211 2245689999765 567775322
Q ss_pred --CceEEEEeeC-CceEEEEec---------CCCCceEEEEcCCCcE-EEEEecCCCCCCCCCcEEEEecCCCceEEEEe
Q psy5806 1110 --MHTINVARSD-GQHKKILVN---------DLMEPLAIAVYPRRGL-LFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE 1176 (1332)
Q Consensus 1110 --~~~I~v~~ld-G~~~~~~~~---------~~~~P~~iavdp~~g~-Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~ 1176 (1332)
...|. ...| |+.=+.+.. +......|+|+|.+.. ||.+... ..|+|..=.|..-+.+..
T Consensus 86 ~~~~gi~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~-------~gl~~S~D~G~tW~~~~~ 157 (427)
T d2ebsa1 86 DEWAAFY-VSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT-------EGIWKSSDRAKTWTNVTS 157 (427)
T ss_dssp SSCCEEE-EESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSS-------SCEEEESSTTSSCEECTT
T ss_pred CcCccEE-EeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccc-------cceeeecCCCceeeeccc
Confidence 23443 3444 554332221 1123456999997654 5554322 358886655544433321
Q ss_pred cC--C---CCcceEEEecC-CCEEEEEEcCCCeEEEEecCCCceEE
Q psy5806 1177 ED--L---AFPNELAIDFK-QRRLFWADSTNKRIEYCDFFGRSRKI 1216 (1332)
Q Consensus 1177 ~~--l---~~p~glaiD~~-~~~LY~~d~~~~~I~~~d~dG~~~~~ 1216 (1332)
.. . .....|++|+. .+.||.+....+.|.+..=.|..-+.
T Consensus 158 ~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S~DgG~TW~~ 203 (427)
T d2ebsa1 158 IPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEP 203 (427)
T ss_dssp SSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEE
T ss_pred CcccccCCccceEEEecccccceeeeeeeecccceeccCCCCCceE
Confidence 11 1 11335788874 56788877666778876544555443
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.98 E-value=0.45 Score=33.66 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCcccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECF 1326 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~ 1326 (1332)
...|||.. +| .|+.. ..+|+|.|+.||.+. .|.
T Consensus 4 C~~~PC~n-~g----~C~~~--~~~y~C~C~~G~~G~-~Ce 36 (39)
T d2vj3a2 4 CVSNPCQN-DA----TCLDQ--IGEFQCICMPGYEGV-HCE 36 (39)
T ss_dssp TTTCCCCS-SC----EEEEC--SSCEEEECCTTEESS-SSC
T ss_pred CcCCCCCC-CC----EEECC--CCCEEEeCCCCCccC-cCe
Confidence 45678874 33 56655 468999999999875 774
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.75 E-value=30 Score=34.52 Aligned_cols=158 Identities=12% Similarity=0.026 Sum_probs=84.7
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee--cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL--MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~--~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+.+|+|++.++.|..+. ..++|+..+++.+.....+.. .....+..+++...++.+.++-...+.|.+.++.....
T Consensus 13 ~I~~l~fsp~~~~L~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~ 91 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CEEEEEEeCCCCEEEEEE-CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence 367999999988877665 678888887764443333221 12335678888766676666666677888888875443
Q ss_pred EE-EecCCCCc-eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC--CCceEEEEecC----CCCcceEEEecCCCEEE
Q psy5806 1124 KI-LVNDLMEP-LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD--GSYRTVLVEED----LAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1124 ~~-~~~~~~~P-~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld--G~~~~~l~~~~----l~~p~glaiD~~~~~LY 1195 (1332)
.. ........ ......+....+...... ..+...++. ........... ......+.+......++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 92 FQALTNNEANLGICRICKYGDDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp EEECBSCCCCSCEEEEEEETTTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred cccccccccccccccccccccccccccccc-------cccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 33 22221222 233333333344333322 233333331 11111111111 11223456666666666
Q ss_pred EEEcCCCeEEEEecCCC
Q psy5806 1196 WADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~ 1212 (1332)
.+. ..+.|...++...
T Consensus 165 ~~~-~d~~i~~~~~~~~ 180 (342)
T d1yfqa_ 165 VGM-NNSQVQWFRLPLC 180 (342)
T ss_dssp EEE-STTEEEEEESSCC
T ss_pred eec-CCCcEEEEecccC
Confidence 554 5678888888644
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.41 E-value=0.49 Score=32.57 Aligned_cols=32 Identities=28% Similarity=0.827 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEEC 1325 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c 1325 (1332)
...|||... | .|+.. ..+|+|.|+.||.+. .|
T Consensus 3 C~~~PC~ng-g----~C~~~--~~~y~C~C~~g~~G~-~C 34 (35)
T d2vj3a3 3 CASSPCLHN-G----RCLDK--INEFQCECPTGFTGH-LC 34 (35)
T ss_dssp TTTCCSTTT-C----EEEEC--SSCEEEECCTTEESS-SS
T ss_pred CCCCCCCCC-c----EEECC--CCCeEEECCCCCCCC-Cc
Confidence 456888843 3 56666 467999999999774 66
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.59 Score=33.04 Aligned_cols=32 Identities=34% Similarity=0.770 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEEC 1325 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c 1325 (1332)
...|||... | .|+.. .++|+|.|+.||.+. .|
T Consensus 6 C~~~PC~ng-g----~C~~~--~~~y~C~C~~g~~G~-~C 37 (39)
T d1edmb_ 6 CESNPCLNG-G----SCKDD--INSYECWCPFGFEGK-NC 37 (39)
T ss_dssp TTTCCCCTT-C----EEEEE--TTEEEEECCTTCCST-TS
T ss_pred CCCCCCCCC-c----EEEcC--CCCEEEECCCCCCCC-CC
Confidence 456777743 3 46666 468999999999875 77
|
| >d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epiregulin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.53 Score=34.56 Aligned_cols=33 Identities=21% Similarity=0.566 Sum_probs=24.7
Q ss_pred ccccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 392 YQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 392 ~~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
..+.|.||+|-.+ +..++++|.|+.||. |.+|.
T Consensus 10 ~~~yC~nG~C~~~--~~~~~~~C~C~~gY~----G~RCe 42 (46)
T d1k36a_ 10 MNGYCLHGQCIYL--VDMSQNYCRCEVGYT----GVRCE 42 (46)
T ss_dssp CCSSCSSEEEEEE--TTTTEEEEEECTTCS----STTSC
T ss_pred CCCcCcCCEEEEe--CCCCccEeECCCCce----ecCce
Confidence 3578888877544 455689999999997 55774
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=80.07 E-value=11 Score=41.20 Aligned_cols=162 Identities=11% Similarity=0.010 Sum_probs=84.3
Q ss_pred CCCCceeeEEEecCCe-EEEEcCCCceEEEEeeCCceEEEEec-------CCCCceEEEEcCCCcEEEEEecCCCCCCCC
Q psy5806 1087 NDTIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQHKKILVN-------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPT 1158 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~~~~~~~-------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~ 1158 (1332)
+.+...+||||+...+ ||..- ..+.|.+..-.|+.=+.+.. ......+|||||.+....|.-.+.......
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~-~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYART-DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEE-SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEe-cCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 3557889999886544 55543 33345333323444332221 122457899999875444443332111223
Q ss_pred CcEEEEecCCCceEEEEecC--------CCCcceEEEecCC-CEEEEEEcCCCeEEEEecCCCceEEEEe----e---cc
Q psy5806 1159 TKIEKVYLDGSYRTVLVEED--------LAFPNELAIDFKQ-RRLFWADSTNKRIEYCDFFGRSRKIVIS----K---VA 1222 (1332)
Q Consensus 1159 ~~I~r~~ldG~~~~~l~~~~--------l~~p~glaiD~~~-~~LY~~d~~~~~I~~~d~dG~~~~~~~~----~---~~ 1222 (1332)
..|+|..=.|..-+.+-... ......|+||+.+ +.||.+ ...+.|.+..=.|..-+.+.. . ..
T Consensus 89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~ 167 (427)
T d2ebsa1 89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSSDRAKTWTNVTSIPDAFTNGIG 167 (427)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEEESSTTSSCEECTTSSCCCCSSSC
T ss_pred ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceeeecCCCceeeecccCcccccCCcc
Confidence 45777755555444432210 1123459999865 456654 445567775544655544432 1 11
Q ss_pred cceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
...|++ +....+.||.+....+.|++-.
T Consensus 168 ~~~i~~----~p~~~~~~y~~~~~~~giy~S~ 195 (427)
T d2ebsa1 168 YTSVIF----DPERNGTIYASATAPQGMYVTH 195 (427)
T ss_dssp EEEEEE----CTTSTTCEEEEESSTTCEEEES
T ss_pred ceEEEe----cccccceeeeeeeecccceecc
Confidence 234555 1123567888777767777643
|