Psyllid ID: psy5830

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
ccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHccccccccccccccccccccEEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccEccccccccccHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccHHHHHHHHHHccccEEEEEEEEEcccccccccccccccEEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHcEHcc
MGIKFLEVIKPFcsilpeiakpegrkiQFREKVLWTAITLFIFLVCCQiplfgimssdsadpFYWIRVILASNrgtlmelgispivTSGLIMQLLAGAKlievgdtpkdralfNGAQKLFGMVITVGQAIVYVMTgmygdpseigaagvpddeqkgyglgsGISLFIATNICETIVWKafspatvntgrgteFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGfrvdlpiksaryrgqyssypiklfytsnipIILQSALVSNLCLlsssmgtslstYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGewadvggggparaypigglcyylsppenlghiledPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRyiptaaafgGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEqsemggmgtllf
mgikflevikpfcsilpeiakpegrKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQsemggmgtllf
MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNlcllsssmgtslstylENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
**IKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVS*************************MIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVK*************
*GIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIE************GAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSG**************MVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIF********G*GTLLF
MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
*GIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query503 2.2.26 [Sep-21-2011]
Q9JLR1476 Protein transport protein yes N/A 0.912 0.964 0.786 0.0
Q9H9S3476 Protein transport protein yes N/A 0.912 0.964 0.786 0.0
Q2KHX4476 Protein transport protein yes N/A 0.912 0.964 0.786 0.0
Q5NVM7476 Protein transport protein yes N/A 0.912 0.964 0.786 0.0
Q8AY32476 Protein transport protein N/A N/A 0.912 0.964 0.780 0.0
Q90ZM2476 Protein transport protein yes N/A 0.912 0.964 0.778 0.0
Q5EA68476 Protein transport protein no N/A 0.912 0.964 0.778 0.0
P61621476 Protein transport protein no N/A 0.912 0.964 0.776 0.0
Q5R5L5476 Protein transport protein no N/A 0.912 0.964 0.776 0.0
P61620476 Protein transport protein no N/A 0.912 0.964 0.776 0.0
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3 Back     alignment and function desciption
 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/520 (78%), Positives = 439/520 (84%), Gaps = 61/520 (11%)

Query: 1   MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
           MGIKFLEVIKPFC++LPEI KPE RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA
Sbjct: 1   MGIKFLEVIKPFCAVLPEIQKPE-RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 59

Query: 61  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLF 120
           DPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAK+IEVGDTPKDRALFNGAQKLF
Sbjct: 60  DPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLF 119

Query: 121 GMVITVGQAIVYVMTGMYGDPSEIGA------------AGVPDDE-----QKGYGLGSGI 163
           GM+IT+GQAIVYVMTGMYGDP+E+GA            AG+         QKGYGLGSGI
Sbjct: 120 GMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGI 179

Query: 164 SLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223
           SLFIATNICETIVWKAFSP T+NTGRGTEFEGAVIALFHLLATR DKVRALREAFYRQNL
Sbjct: 180 SLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNL 239

Query: 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 283
           PNLMNL+ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS
Sbjct: 240 PNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 299

Query: 284 NLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNI 343
           NL ++S                                            ML+V+F GN 
Sbjct: 300 NLYVISQ-------------------------------------------MLSVRFSGNF 316

Query: 344 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFS 403
            VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G I EDP+H ++YI+FMLGSCAFFS
Sbjct: 317 LVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFS 376

Query: 404 KTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463
           KTWIEVSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIGALSVLAD
Sbjct: 377 KTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLAD 436

Query: 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503
           F+GAIGSGTGILLAVTIIYQYFEIFVKEQ+E+GGMG L F
Sbjct: 437 FLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Mus musculus (taxid: 10090)
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q5NVM7|S61A2_PONAB Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q5EA68|S61A1_BOVIN Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3 Back     alignment and function description
>sp|P61621|S61A1_RAT Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2 Back     alignment and function description
>sp|Q5R5L5|S61A1_PONAB Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3 Back     alignment and function description
>sp|P61620|S61A1_MOUSE Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query503
187177323476 Sec61 alpha 1 subunit [Acyrthosiphon pis 0.912 0.964 0.844 0.0
157106452476 preprotein translocase secy subunit (sec 0.912 0.964 0.832 0.0
170045155476 transport protein Sec61 subunit alpha 2 0.912 0.964 0.830 0.0
19335714476 probable transport protein Sec61 alpha s 0.912 0.964 0.830 0.0
157127116476 preprotein translocase secy subunit (sec 0.912 0.964 0.828 0.0
14861602476 probable transport protein Sec61 alpha s 0.912 0.964 0.828 0.0
158299950476 AGAP009182-PA [Anopheles gambiae str. PE 0.908 0.960 0.830 0.0
332372931476 unknown [Dendroctonus ponderosae] 0.912 0.964 0.828 0.0
91092466476 PREDICTED: similar to transport protein 0.912 0.964 0.828 0.0
13173171476 putative transport protein Sec61 alpha s 0.910 0.962 0.828 0.0
>gi|187177323|ref|NP_001119639.1| Sec61 alpha 1 subunit [Acyrthosiphon pisum] gi|52630957|gb|AAU84942.1| probable transport protein Sec61 alpha subunit [Toxoptera citricida] gi|89574501|gb|ABD76381.1| putative transport protein Sec61 alpha subunit [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/520 (84%), Positives = 445/520 (85%), Gaps = 61/520 (11%)

Query: 1   MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
           MG KFLEVIKPFCSILPEIAKPE RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA
Sbjct: 1   MGFKFLEVIKPFCSILPEIAKPE-RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 59

Query: 61  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLF 120
           DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAK+IEVGDTPKDRALFNGAQKLF
Sbjct: 60  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLF 119

Query: 121 GMVITVGQAIVYVMTGMYGDPSEIGA------------AGVPDDE-----QKGYGLGSGI 163
           GMVITVGQAIVYVMTGMYGDPSEIGA            AG+         QKGYGLGSGI
Sbjct: 120 GMVITVGQAIVYVMTGMYGDPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGI 179

Query: 164 SLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223
           SLFIATNICETIVWKAFSP TVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL
Sbjct: 180 SLFIATNICETIVWKAFSPTTVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 239

Query: 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 283
           PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS
Sbjct: 240 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 299

Query: 284 NLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNI 343
           NL ++S                                            MLAVKFHGNI
Sbjct: 300 NLYVISQ-------------------------------------------MLAVKFHGNI 316

Query: 344 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFS 403
            VNLLG WADVGGGGPARAYP+GGLCYYLSPPENL HI EDPIHAILYIVFMLGSCAFFS
Sbjct: 317 LVNLLGVWADVGGGGPARAYPVGGLCYYLSPPENLSHIAEDPIHAILYIVFMLGSCAFFS 376

Query: 404 KTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463
           KTWIEVSGSSAKDVAKQLKEQQMVMRGHR+ SMIHELNRYIPTAAAFGGLCIGALSVLAD
Sbjct: 377 KTWIEVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLAD 436

Query: 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503
           FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGM TLLF
Sbjct: 437 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMSTLLF 476

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157106452|ref|XP_001649329.1| preprotein translocase secy subunit (sec61) [Aedes aegypti] gi|108879849|gb|EAT44074.1| AAEL004523-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170045155|ref|XP_001850184.1| transport protein Sec61 subunit alpha 2 [Culex quinquefasciatus] gi|167868165|gb|EDS31548.1| transport protein Sec61 subunit alpha 2 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|19335714|gb|AAL85626.1| probable transport protein Sec61 alpha subunit [Aedes aegypti] Back     alignment and taxonomy information
>gi|157127116|ref|XP_001661042.1| preprotein translocase secy subunit (sec61) [Aedes aegypti] gi|108873050|gb|EAT37275.1| AAEL010716-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|14861602|gb|AAK73749.1|AF392805_1 probable transport protein Sec61 alpha subunit [Aedes aegypti] Back     alignment and taxonomy information
>gi|158299950|ref|XP_319948.4| AGAP009182-PA [Anopheles gambiae str. PEST] gi|157013765|gb|EAA14690.5| AGAP009182-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|332372931|gb|AEE61607.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|91092466|ref|XP_970150.1| PREDICTED: similar to transport protein Sec61 subunit alpha 2 [Tribolium castaneum] gi|270004782|gb|EFA01230.1| hypothetical protein TcasGA2_TC010557 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|13173171|gb|AAK14329.1|AF326338_1 putative transport protein Sec61 alpha subunit [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query503
FB|FBgn0086357476 Sec61alpha "Sec61alpha" [Droso 0.337 0.357 0.917 5.4e-224
UNIPROTKB|Q2KHX4476 SEC61A2 "Protein transport pro 0.337 0.357 0.847 1.5e-217
UNIPROTKB|Q9H9S3476 SEC61A2 "Protein transport pro 0.337 0.357 0.847 1.5e-217
UNIPROTKB|F2Z5D0476 SEC61A2 "Uncharacterized prote 0.337 0.357 0.847 1.5e-217
MGI|MGI:1931071476 Sec61a2 "Sec61, alpha subunit 0.337 0.357 0.847 1.5e-217
UNIPROTKB|F1PC79476 SEC61A2 "Uncharacterized prote 0.337 0.357 0.847 2.8e-216
UNIPROTKB|F1P4K3482 SEC61A2 "Uncharacterized prote 0.337 0.352 0.847 5.7e-216
ZFIN|ZDB-GENE-020418-2476 sec61a1 "Sec61 alpha 1 subunit 0.337 0.357 0.835 4e-215
UNIPROTKB|Q8AY32476 sec61a "Protein transport prot 0.337 0.357 0.835 5.1e-215
UNIPROTKB|Q5EA68476 SEC61A1 "Protein transport pro 0.337 0.357 0.847 1.7e-214
FB|FBgn0086357 Sec61alpha "Sec61alpha" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 830 (297.2 bits), Expect = 5.4e-224, Sum P(3) = 5.4e-224
 Identities = 156/170 (91%), Positives = 164/170 (96%)

Query:   334 MLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIV 393
             MLAVKF GN F+NLLG WADVGGGGPAR+YPIGGLCYYLSPPE++GHIL DPIHA+LYIV
Sbjct:   307 MLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPESVGHILTDPIHALLYIV 366

Query:   394 FMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGL 453
             FMLGSCAFFSKTWI+VSGSSAKDVAKQLKEQ MVMRGHRE SMIHELNRYIPTAAAFGGL
Sbjct:   367 FMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMVMRGHRENSMIHELNRYIPTAAAFGGL 426

Query:   454 CIGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503
             CIGALSV+ADF+GAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF
Sbjct:   427 CIGALSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 476
GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS;NAS
GO:0005784 "Sec61 translocon complex" evidence=ISS
GO:0008219 "cell death" evidence=IMP
GO:0007391 "dorsal closure" evidence=IMP
GO:0042335 "cuticle development" evidence=IMP
GO:0008258 "head involution" evidence=IMP
GO:0010942 "positive regulation of cell death" evidence=IMP
GO:0005791 "rough endoplasmic reticulum" evidence=IDA
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0010507 "negative regulation of autophagy" evidence=IMP
GO:0045169 "fusome" evidence=IDA
UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5D0 SEC61A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1931071 Sec61a2 "Sec61, alpha subunit 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC79 SEC61A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4K3 SEC61A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020418-2 sec61a1 "Sec61 alpha 1 subunit (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8AY32 sec61a "Protein transport protein Sec61 subunit alpha" [Gadus ogac (taxid:8052)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA68 SEC61A1 "Protein transport protein Sec61 subunit alpha isoform 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96TW8SC61A_HANANNo assigned EC number0.51970.87870.9227N/AN/A
Q5R5L5S61A1_PONABNo assigned EC number0.77690.91250.9642noN/A
Q5EA68S61A1_BOVINNo assigned EC number0.77880.91250.9642noN/A
Q9YDD0SECY_AERPENo assigned EC number0.28480.83100.9146yesN/A
P61621S61A1_RATNo assigned EC number0.77690.91250.9642noN/A
P78979SC61A_YARLINo assigned EC number0.52550.88270.9426yesN/A
Q870W0SC61A_NEUCRNo assigned EC number0.55790.90250.9537N/AN/A
Q9HPB1SECY_HALSANo assigned EC number0.27070.84290.8635yesN/A
Q90YL4S61A2_DANRENo assigned EC number0.77110.91250.9642yesN/A
Q6FRY3SC61A_CANGANo assigned EC number0.51170.88460.9290yesN/A
P38377S61A1_CANFANo assigned EC number0.7750.91250.9642noN/A
Q7T278SC61A_HARANNo assigned EC number0.77690.91250.9642N/AN/A
Q98SN9S61A1_ONCMYNo assigned EC number0.77690.91250.9642N/AN/A
Q98SN8S61A2_ONCMYNo assigned EC number0.77880.91250.9642N/AN/A
Q8AY34SC61A_HEMAMNo assigned EC number0.7750.91250.9642N/AN/A
Q8AY35SC61A_NOTANNo assigned EC number0.7750.91250.9642N/AN/A
Q8AY32SC61A_GADOCNo assigned EC number0.78070.91250.9642N/AN/A
Q8AY33SC61A_BORSANo assigned EC number0.77300.91250.9642N/AN/A
Q8AY31SC61A_BOVVANo assigned EC number0.77110.91250.9642N/AN/A
Q90ZM2S61A1_DANRENo assigned EC number0.77880.91250.9642yesN/A
P32915SC61A_YEASTNo assigned EC number0.49600.87270.9145yesN/A
P28542SECY_HALMANo assigned EC number0.28110.84690.8747yesN/A
Q2KHX4S61A2_BOVINNo assigned EC number0.78650.91250.9642yesN/A
Q9UX84SECY_SULSONo assigned EC number0.29120.85880.9211yesN/A
Q5NVM7S61A2_PONABNo assigned EC number0.78650.91250.9642yesN/A
Q8AY36SC61A_PAGBONo assigned EC number0.7750.91250.9642N/AN/A
P79088SC61A_SCHPONo assigned EC number0.47470.86670.9102yesN/A
Q9H9S3S61A2_HUMANNo assigned EC number0.78650.91250.9642yesN/A
Q25147SC61A_HALRONo assigned EC number0.76920.91050.9642N/AN/A
P38379SC61A_PYRSANo assigned EC number0.56150.87670.8927N/AN/A
O28377SECY_ARCFUNo assigned EC number0.28970.87270.8904yesN/A
O26134SECY_METTHNo assigned EC number0.30660.81700.9013yesN/A
Q7T277SC61A_DISMANo assigned EC number0.77690.91250.9642N/AN/A
Q6BN08SC61A_DEBHANo assigned EC number0.53100.89060.9352yesN/A
Q8U019SECY_PYRFUNo assigned EC number0.30360.84690.9102yesN/A
P61620S61A1_MOUSENo assigned EC number0.77690.91250.9642noN/A
P28541SECY_METVANo assigned EC number0.310.80510.9246yesN/A
Q54XK2SC61A_DICDINo assigned EC number0.63330.90650.96yesN/A
Q9P8E3SC61A_CANALNo assigned EC number0.52450.88070.9248N/AN/A
Q6CPY9SC61A_KLULANo assigned EC number0.50090.88860.9312yesN/A
Q9JLR1S61A2_MOUSENo assigned EC number0.78650.91250.9642yesN/A
O59442SECY_PYRHONo assigned EC number0.30440.84290.9059yesN/A
Q752H7SC61A_ASHGONo assigned EC number0.50090.88860.9312yesN/A
Q9V1V8SECY_PYRABNo assigned EC number0.29980.84690.9102yesN/A
P61619S61A1_HUMANNo assigned EC number0.77690.91250.9642noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query503
PTZ00219474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 1e-114
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 3e-66
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 1e-47
pfam00344340 pfam00344, SecY, SecY translocase 2e-43
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 2e-29
pfam00344340 pfam00344, SecY, SecY translocase 2e-25
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 4e-21
pfam1055935 pfam10559, Plug_translocon, Plug domain of Sec61p 4e-13
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  749 bits (1936), Expect = 0.0
 Identities = 325/515 (63%), Positives = 385/515 (74%), Gaps = 65/515 (12%)

Query: 1   MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
              +FL +++P  +ILPE+A+P+ RKI F+EKVLWTAI LF+FLVCCQIPL+GI SS S+
Sbjct: 3   KMTRFLNLLRPAMAILPEVAEPD-RKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS 61

Query: 61  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKL 119
           DPFYW+RVILASNRGTLMELGISPIVTS ++MQLLAG+K+I+V  +  +DRALF GAQKL
Sbjct: 62  DPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKL 121

Query: 120 FGMVITVGQAIVYVMTGMYGDPSEIGA------------AGVPD---DE--QKGYGLGSG 162
            G++IT+G+A+ YV +GMYGD SEIGA            AG+     DE  QKGYGLGSG
Sbjct: 122 LGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGSG 181

Query: 163 ISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQN 222
           ISLFIATNICETI+WKAFSP T+NTGRGTEFEGA+IALFHLL TR DK+RAL+EAFYR +
Sbjct: 182 ISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPH 241

Query: 223 LPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALV 282
           LPNL NLLATVLVF +VIYFQGFRVDLP+KS + RGQ  SYPIKLFYTSNIPIILQ+ALV
Sbjct: 242 LPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALV 301

Query: 283 SNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGN 342
           SNL   S                                            +L  +F  N
Sbjct: 302 SNLYFFSQ-------------------------------------------ILYRRFKNN 318

Query: 343 IFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFF 402
             +NLLG+W +V   G  ++ P+GGL YYLSPP +   I+ DPIH ILYIVF+L SCA F
Sbjct: 319 FLINLLGQWQEVEYSG--QSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALF 376

Query: 403 SKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGLCIGALSVL 461
           SKTWIEVSGSSAKDVAKQLK+Q M M G+R+  SM+  LNRYIPTAA+FGG+CIGAL++L
Sbjct: 377 SKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTIL 436

Query: 462 ADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMG 496
           ADF+GAIGSGTGILLAVTIIYQY+E F KE+ + G
Sbjct: 437 ADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYG 471

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 503
KOG1373|consensus476 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 98.2
>KOG1373|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.9e-111  Score=851.64  Aligned_cols=457  Identities=77%  Similarity=1.269  Sum_probs=443.2

Q ss_pred             CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCccccccc
Q psy5830           1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMEL   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~L   80 (503)
                      +|+|++|.+|||++++|||+.|+ ||.++|+|++||.+.+++|.+++|||++|+.+++.+||++|+|.++|+||+|+|+|
T Consensus         2 ~g~R~l~~vkPf~~~lPEv~~Pe-rk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP~yw~RvilasnrgTLMel   80 (476)
T KOG1373|consen    2 SGFRFLDLVKPFLSFLPEVEAPE-RKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADPFYWMRVILASNRGTLMEL   80 (476)
T ss_pred             CCcchhhhhhhhhccCccccCch-hcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCcHHHHHHHHhcCCcchhhh
Confidence            58999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCceee------------e
Q psy5830          81 GISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGA------------A  147 (503)
Q Consensus        81 GI~PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~~~l~~------------a  147 (503)
                      ||.|++|++++||+|+++|++++| +.++||+.||..||++++++++.||+.++++|+||+++++++            |
T Consensus        81 GisPivtSglimQlLag~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~A  160 (476)
T KOG1373|consen   81 GISPIVTSGLIMQLLAGSKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFA  160 (476)
T ss_pred             ccchhhHHHHHHHHHccCcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHh
Confidence            999999999999999999999999 788999999999999999999999999999999998877643            6


Q ss_pred             cc-----cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcC
Q psy5830         148 GV-----PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQN  222 (503)
Q Consensus       148 G~-----~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~  222 (503)
                      |.     ||+.|||||+|||+||||++|||++++|+.|+|.+++++||.|+||++++++|.+.+++||.+|++++|+|+|
T Consensus       161 giiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rqn  240 (476)
T KOG1373|consen  161 GIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQN  240 (476)
T ss_pred             hHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            64     9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhh
Q psy5830         223 LPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLEN  302 (503)
Q Consensus       223 lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~  302 (503)
                      +||+..++++++++++|+|+|+.|+++|++++|.||+.++||||++|+|+||||+.|++.++.+.++             
T Consensus       241 LPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~is-------------  307 (476)
T KOG1373|consen  241 LPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVIS-------------  307 (476)
T ss_pred             ccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999998888             


Q ss_pred             hhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccc
Q psy5830         303 GLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHIL  382 (503)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~  382 (503)
                                                    |++++++++|..++++|.|.+...  +.+++|++|++||++||.++.+.+
T Consensus       308 ------------------------------qll~~k~~~n~~v~llG~w~~~~~--~~~~~p~~glsyy~~pp~s~~~~~  355 (476)
T KOG1373|consen  308 ------------------------------QLLYKKFPGNFLVRLLGVWEDSEG--GGRSMPVSGLSYYITPPESFGEAL  355 (476)
T ss_pred             ------------------------------HHHHhhCCCceEEEEEeeeecCCC--CcccccccceeEecCChHHHHHHh
Confidence                                          899999999999999999988652  357789999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCchhHHHHHhhhhhhhhhhHHHHHHHHHHH
Q psy5830         383 EDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLA  462 (503)
Q Consensus       383 ~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~t~~yL~k~i~~~t~~G~~~l~~ia~lp  462 (503)
                      .||+|.++|++|++..|.+||+.|+|+||++|||+|||||+|++.++|+|++++.|+|+||||.++++||.|++++++++
T Consensus       356 ~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~RE~n~~~eLnr~IPtAA~~Gg~~igaltV~~  435 (476)
T KOG1373|consen  356 QDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHRETNMAKELNRYIPTAAAFGGLCIGALTVLA  435 (476)
T ss_pred             hCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCcchhhHHHHHHhhccHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccCcccchhHHHHHHHHHHHHHHHhhhhcCcccccCC
Q psy5830         463 DFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF  503 (503)
Q Consensus       463 ~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~~~~~~~~~~  503 (503)
                      |++|.+|+||+++++|+++++++|+++||+.+++|+..+.+
T Consensus       436 d~lgaiGsgtgIllavt~iyqy~E~~~kE~~~~~g~~~~~~  476 (476)
T KOG1373|consen  436 DLLGAIGSGTGILLAVTIIYQYFEIFAKEQAQEGGFSALFF  476 (476)
T ss_pred             HHhhcccCCceEEeehHHHHHHHHHHHHHHhhcCCcccCCC
Confidence            99999999999999999999999999999999999987754

>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query503
2wwb_A476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 0.0
3mp7_A482 Lateral Opening Of A Translocon Upon Entry Of Prote 2e-57
3dkn_A430 Sec61 In The Canine Ribosome-Channel Complex From T 1e-56
1rh5_A436 The Structure Of A Protein Conducting Channel Lengt 5e-56
1rhz_A436 The Structure Of A Protein Conducting Channel Lengt 7e-56
2yxq_A431 The Plug Domain Of The Secy Protein Stablizes The C 1e-54
2yxr_A426 The Plug Domain Of The Secy Protein Stablizes The C 4e-53
2ww9_A490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 3e-50
3bo0_A442 Ribosome-Secy Complex Length = 442 2e-49
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/520 (77%), Positives = 435/520 (83%), Gaps = 61/520 (11%)
Query: 1   MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
           M IKFLEVIKPFC ILPEI KPE RKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSA
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPE-RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSA 59
Query: 61  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLF 120
           DPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAK+IEVGDTPKDRALFNGAQKLF
Sbjct: 60  DPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLF 119
Query: 121 GMVITVGQAIVYVMTGMYGDPSEIGA------------AGVPDDE-----QKGYGLGSGI 163
           GM+IT+GQ+IVYVMTGMYGDPSE+GA            AG+         QKGYGLGSGI
Sbjct: 120 GMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGI 179
Query: 164 SLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223
           SLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR DKVRALREAFYRQNL
Sbjct: 180 SLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNL 239
Query: 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 283
           PNLMNL+AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVS
Sbjct: 240 PNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVS 299
Query: 284 NXXXXXXXXXXXXXXXXENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNI 343
           N                     L V++Q                      ML+ +F GN+
Sbjct: 300 N---------------------LYVISQ----------------------MLSARFSGNL 316
Query: 344 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFS 403
            V+LLG W+D   GGPARAYP+GGLC+YLSPPE+ G +LEDP+HA++YIVFMLGSCAFFS
Sbjct: 317 LVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFS 376
Query: 404 KTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463
           KTWIEVSGSSAKDVAKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLAD
Sbjct: 377 KTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLAD 436
Query: 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503
           F+GAIGSGTGILLAVTIIYQYFEIFVKEQSE+G MG LLF
Sbjct: 437 FLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query503
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-165
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-161
3mp7_A482 Preprotein translocase subunit SECY; protein trans 1e-158
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-137
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
 Score =  475 bits (1224), Expect = e-165
 Identities = 401/520 (77%), Positives = 432/520 (83%), Gaps = 61/520 (11%)

Query: 1   MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
           M IKFLEVIKPFC ILPEI KPE RKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSA
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPE-RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSA 59

Query: 61  DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLF 120
           DPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAK+IEVGDTPKDRALFNGAQKLF
Sbjct: 60  DPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLF 119

Query: 121 GMVITVGQAIVYVMTGMYGDPSEIGAAGV-----------------PDDEQKGYGLGSGI 163
           GM+IT+GQ+IVYVMTGMYGDPSE+GA                     +  QKGYGLGSGI
Sbjct: 120 GMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGI 179

Query: 164 SLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223
           SLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR DKVRALREAFYRQNL
Sbjct: 180 SLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNL 239

Query: 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS 283
           PNLMNL+AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSALVS
Sbjct: 240 PNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVS 299

Query: 284 NLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNI 343
           NL ++S                                            ML+ +F GN+
Sbjct: 300 NLYVISQ-------------------------------------------MLSARFSGNL 316

Query: 344 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFS 403
            V+LLG W+D   GGPARAYP+GGLC+YLSPPE+ G +LEDP+HA++YIVFMLGSCAFFS
Sbjct: 317 LVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFS 376

Query: 404 KTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463
           KTWIEVSGSSAKDVAKQLKEQQMVMRGHRE SM+HELNRYIPTAAAFGGLCIGALSVLAD
Sbjct: 377 KTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLAD 436

Query: 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503
           F+GAIGSGTGILLAVTIIYQYFEIFVKEQSE+G MG LLF
Sbjct: 437 FLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query503
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
Probab=100.00  E-value=2.7e-106  Score=861.16  Aligned_cols=459  Identities=86%  Similarity=1.384  Sum_probs=410.9

Q ss_pred             CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCccccccc
Q psy5830           1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMEL   80 (503)
Q Consensus         1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~L   80 (503)
                      |++|++|.+||+.+++|||++|+ ||+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++++|+|+|
T Consensus         1 m~~~~l~~~~p~~~~lP~v~~P~-~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaL   79 (476)
T 2wwb_A            1 MAIKFLEVIKPFCVILPEIQKPE-RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMEL   79 (476)
T ss_dssp             CCSCCCCCCHHHHHHSCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSS
T ss_pred             CCchHHHHHHHHHHhCCCCCCCC-cCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHH
Confidence            78999999999999999999999 99999999999999999999999999999999877899999999999999999999


Q ss_pred             CchhHHhHHHHHHHHhhchhcccCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC---Cc--------eeeecc
Q psy5830          81 GISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDP---SE--------IGAAGV  149 (503)
Q Consensus        81 GI~PyItAsIi~QLL~~~kl~~~~~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~---~~--------l~~aG~  149 (503)
                      ||+||||||||||||++.++.+.++..+||+|+|++|||+|+++|++||++++.++.++..   +.        .+++|+
T Consensus        80 GI~PyItASII~QLL~g~~iip~~~~l~gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt  159 (476)
T 2wwb_A           80 GISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAG  159 (476)
T ss_dssp             SSTHHHHHHHHHHHHHHHCCCSCCSSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHH
Confidence            9999999999999998877777664223999999999999999999999999885445421   11        134665


Q ss_pred             ------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCc
Q psy5830         150 ------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL  223 (503)
Q Consensus       150 ------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~l  223 (503)
                            ||+++||||+|||+||||++|||++++|+.|+|.+.+.++|.|++|++.++++.+.+++++.++++++++|.++
T Consensus       160 ~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l  239 (476)
T 2wwb_A          160 LIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNL  239 (476)
T ss_dssp             HHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSH
T ss_pred             HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhcccc
Confidence                  99999999999999999999999999999999987777788899999988888776677777888889999998


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhh
Q psy5830         224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENG  303 (503)
Q Consensus       224 p~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~  303 (503)
                      |++..+++++++++++||+|++|||||+||+|.+|+++.||+|+||+|+||+||||+++++|++++              
T Consensus       240 ~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~--------------  305 (476)
T 2wwb_A          240 PNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVIS--------------  305 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHH--------------
T ss_pred             chHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHH--------------
Confidence            888888888889999999999999999999997666655699999999999999999999999998              


Q ss_pred             hHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccccccc
Q psy5830         304 LMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILE  383 (503)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~  383 (503)
                                                   ++++.+++++..+++++.|.+...+++++++|++|+++|++||.++.+.+.
T Consensus       306 -----------------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~  356 (476)
T 2wwb_A          306 -----------------------------QMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLE  356 (476)
T ss_dssp             -----------------------------HHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCC
T ss_pred             -----------------------------HHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhcc
Confidence                                         555444444444456677754321223567899999999999998888888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCchhHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q psy5830         384 DPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD  463 (503)
Q Consensus       384 ~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~t~~yL~k~i~~~t~~G~~~l~~ia~lp~  463 (503)
                      +|+|.++|++++++||+||++.|++++|.||||+||||||+|++|||+||.+|+|||+|+++|+|++||+|++++|++|+
T Consensus       357 ~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~  436 (476)
T 2wwb_A          357 DPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLAD  436 (476)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999669999999999999999999999999999


Q ss_pred             HHcccCcccchhHHHHHHHHHHHHHHHhhhhcCcccccCC
Q psy5830         464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF  503 (503)
Q Consensus       464 llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~~~~~~~~~~  503 (503)
                      +++.++||||+||+||++++++||++||+.|++.|+.++|
T Consensus       437 ~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~~~~~~~~~~~  476 (476)
T 2wwb_A          437 FLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF  476 (476)
T ss_dssp             HHCCSSCHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSCC
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence            9988889999999999999999999999999888988876
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 503
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 1e-104
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  315 bits (809), Expect = e-104
 Identities = 146/503 (29%), Positives = 244/503 (48%), Gaps = 97/503 (19%)

Query: 7   EVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWI 66
           + + P    +PE+  P  ++I F+EK+ WT I L ++ +   I ++   +      F + 
Sbjct: 1   KKLIPILEKIPEVELPV-KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFW 58

Query: 67  RVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVIT 125
           + I AS  GTL+ LGI PIVT+G+IMQLL G+ +I++    P++RALF G QKL  +++ 
Sbjct: 59  QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMC 118

Query: 126 VGQAIVYVMTGMYGDPSEIGAAGVP-------------DDEQKGYGLGSGISLFIATNIC 172
             +A+++V  G +G  + + A  V              D+    YG+GSGI LFIA  + 
Sbjct: 119 FVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVS 178

Query: 173 ETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLAT 232
           +TI   A  P           EG +    + L                 N+  +  ++ T
Sbjct: 179 QTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIGT 215

Query: 233 VLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSM 292
           ++VF +V+Y +  RV++P+   R +G    YPIK  Y SNIP+IL +AL +N+ L   ++
Sbjct: 216 IIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLAL 275

Query: 293 GTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWA 352
                                                             + + +LG + 
Sbjct: 276 Y------------------------------------------------RMGIPILGHYE 287

Query: 353 DVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGS 412
                       + G+ YYLS P  L  ++ DPIHAI+Y++ M+ +C  F   W+E +G 
Sbjct: 288 G--------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGL 339

Query: 413 SAKDVAKQLKEQQMVMRGHR--EQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGS 470
             K +AK++    M ++G R  E+++ H L RYIP         +G L+ +A+F+GA+G 
Sbjct: 340 DPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGG 399

Query: 471 GTGILLAVTIIYQYFEIFVKEQS 493
           GTG+LL V+I+Y+ +E  ++E++
Sbjct: 400 GTGVLLTVSIVYRMYEQLLRERT 422

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query503
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.7e-92  Score=738.62  Aligned_cols=405  Identities=37%  Similarity=0.708  Sum_probs=344.5

Q ss_pred             hhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCcccccccCchhHH
Q psy5830           7 EVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIV   86 (503)
Q Consensus         7 ~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~LGI~PyI   86 (503)
                      ++++|+.+++|||+||+ ||+++|||++||++++++||+|+|||+||+|.+. .|++.+++.++|++++|+|+|||+|||
T Consensus         1 ~~~~p~~~~~p~v~~p~-~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~-~~~~~~~~~~~a~~~~Sif~LGI~PyI   78 (422)
T d1rh5a_           1 KKLIPILEKIPEVELPV-KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-PAIFEFWQTITASRIGTLITLGIGPIV   78 (422)
T ss_dssp             CTTHHHHHHSCCCCCCS-SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCC-CSCCTTHHHHHTCCTTBTTTTTTHHHH
T ss_pred             CCccchhhhCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCc-ccHHHHHHHHhccccccHHHhChHHHH
Confidence            36799999999999999 9999999999999999999999999999998754 578889999999999999999999999


Q ss_pred             hHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCc--------eeeecc------cc
Q psy5830          87 TSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSE--------IGAAGV------PD  151 (503)
Q Consensus        87 tAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~~~--------l~~aG~------~e  151 (503)
                      ||||+||||+..++.|.+ |+++||+|+|++|||+|+++|++||++++..+.++..+.        .+++|+      ||
T Consensus        79 tASIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~iv~~L~aGt~~lmwL~E  158 (422)
T d1rh5a_          79 TAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDE  158 (422)
T ss_dssp             HHHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888887 588999999999999999999999999998766554432        145675      99


Q ss_pred             cccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHHH
Q psy5830         152 DEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLA  231 (503)
Q Consensus       152 ~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i~  231 (503)
                      +++| ||+|||+||+|++|||++++|+.+++           +|.+..+.+....+            ..+++.+..+++
T Consensus       159 ~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~-----------~~~~~~~~~~~~~~------------~~~~~~~~~l~~  214 (422)
T d1rh5a_         159 IVSK-YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIG  214 (422)
T ss_dssp             HHHH-HSSSCHHHHHHHHHHHHHHHHHHHST-----------TCHHHHHHHHTTTT------------CCCGGGTHHHHH
T ss_pred             HHhh-cCcccchHHHHHHHHHHHHHHhccch-----------hHHHHHHHHhhhcc------------cchHHHHHHHHH
Confidence            9999 99999999999999999999998875           34444444333211            123555667778


Q ss_pred             HHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHHHH
Q psy5830         232 TVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQ  311 (503)
Q Consensus       232 ~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~~~  311 (503)
                      +++++++++|+|++|||||++|+|+++.++.||+|+||+|+||+|||++++++|++++                      
T Consensus       215 ~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~----------------------  272 (422)
T d1rh5a_         215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWG----------------------  272 (422)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHH----------------------
Confidence            8888899999999999999999999887777799999999999999999999999988                      


Q ss_pred             HHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHHHH
Q psy5830         312 HVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILY  391 (503)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~ivY  391 (503)
                                           +.++...     .+++++|..        ..+++++++|++||.++.....+|.|.++|
T Consensus       273 ---------------------~~l~~~~-----~~~l~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y  318 (422)
T d1rh5a_         273 ---------------------LALYRMG-----IPILGHYEG--------GRAVDGIAYYLSTPYGLSSVISDPIHAIVY  318 (422)
T ss_dssp             ---------------------HHHHTTS-----CCTTCCBCS--------SSBSSSTTGGGCCCCSSSCCCSCHHHHHHH
T ss_pred             ---------------------Hhhhhcc-----cccccccCC--------CchHHHHHHHhCCcchhhccccCccchHHH
Confidence                                 4444332     124555543        357889999999999998889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hH-HHHHhhhhhhhhhhHHHHHHHHHHHHHHcccC
Q psy5830         392 IVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MI-HELNRYIPTAAAFGGLCIGALSVLADFMGAIG  469 (503)
Q Consensus       392 ~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~-~yL~k~i~~~t~~G~~~l~~ia~lp~llg~~g  469 (503)
                      .++++++|++|+++|.++++.||||+||||||+|++|||+|||+ |. +||+|+++|+|++||+|++++|++|++++..|
T Consensus       319 ~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~~~~  398 (422)
T d1rh5a_         319 MIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALG  398 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999995 74 56999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHhhh
Q psy5830         470 SGTGILLAVTIIYQYFEIFVKEQS  493 (503)
Q Consensus       470 ~GTsiLI~V~vi~~~~~qi~~e~~  493 (503)
                      ||||+||+||+++|++||++|||.
T Consensus       399 gGTslLI~V~v~l~~~~qi~~e~~  422 (422)
T d1rh5a_         399 GGTGVLLTVSIVYRMYEQLLRERT  422 (422)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999974