Psyllid ID: psy5837

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MLESTSPESSRKLISGNPTSTGAGGGSQPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEEEEcccccEEEEccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEccEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEEEEEEEEEEccEEEEEccccccccEEEEcc
Coil and Loop (DISEMBL)
mlestspessrklisgnptstgagggsqptidtvdcitgkadhrvininapqsckfvgnkistakyslvtffpcflfeQFRRYSNIFFLFIALLQqipdvsptgryttliPLILIMVVSGIKEIIEDIKRHLadgeinhrsVDVIRNGMIYVEQWKDLKVGDIVKVynnsffpgdlmvlst
Flexible Loop (DISEMBL)
mlestspessrklisgnptstgagggsqptIDTVDCITGKADHRVIninapqsckfVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKrhladgeinhrsvdvirNGMIYVEQWKDLKVGDIVKVYnnsffpgdlmvlst
Low Complexity Region (SEG)
MLESTSPESSRKLISGNPTSTGAGGGSQPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST
Disordered region (IsUnstruct)
******************************IDTVDCITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMV***
Disordered Region (DISOPRED)
*******************************************RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST
Disordered Region (DISEMBL)
*************ISGNP*********QPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST
Disordered Region (DISPRO)
****************************************ADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLESTSPESSRKLISGNPTSTGAGGGSQPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9NTI2	1148	Probable phospholipid-tra	yes	N/A	0.784	0.123	0.591	1e-45
P98200	1148	Probable phospholipid-tra	yes	N/A	0.784	0.123	0.577	5e-45
Q9Y2Q0	1164	Probable phospholipid-tra	no	N/A	0.828	0.128	0.568	4e-44
Q29449	1149	Probable phospholipid-tra	no	N/A	0.828	0.130	0.549	8e-43
P70704	1149	Probable phospholipid-tra	no	N/A	0.828	0.130	0.549	9e-43
O94296	1258	Probable phospholipid-tra	yes	N/A	0.762	0.109	0.492	3e-34
P39524	1355	Probable phospholipid-tra	yes	N/A	0.790	0.105	0.432	5e-29
Q5BL50	1250	Probable phospholipid-tra	no	N/A	0.718	0.104	0.430	6e-29
Q8TF62	1192	Probable phospholipid-tra	no	N/A	0.762	0.115	0.387	7e-28
A3FIN4	1183	Probable phospholipid-tra	no	N/A	0.701	0.107	0.417	1e-27

>sp|Q9NTI2|AT8A2_HUMAN Probable phospholipid-transporting ATPase IB OS=Homo sapiens GN=ATP8A2 PE=2 SV=2

 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 108/142 (76%)

Query: 40  KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           +A  R I +N P   KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct: 12  EAPARTIYLNQPHLNKFRDNQISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI+I+ ++GIKEI+ED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct: 72  VSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGDIVKV N  + P D+++LS+
Sbjct: 132 VGDIVKVVNGQYLPADVVLLSS 153

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1

>sp|P98200|AT8A2_MOUSE Probable phospholipid-transporting ATPase IB OS=Mus musculus GN=Atp8a2 PE=1 SV=1

 Score =  180 bits (456), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 107/142 (75%)

Query: 40  KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           +A  R+I +N     KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct: 12  EAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PL++I+ ++GIKEIIED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct: 72  VSPTGRYTTLVPLVIILTIAGIKEIIEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGDIVKV N  + P D+++ S+
Sbjct: 132 VGDIVKVLNGQYLPADMVLFSS 153

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9Y2Q0|AT8A1_HUMAN Probable phospholipid-transporting ATPase IA OS=Homo sapiens GN=ATP8A1 PE=1 SV=1

 Score =  177 bits (448), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 3/153 (1%)

Query: 32  DTVDCITGKADH---RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFF 88
           D V   T  AD    R I IN PQ  KF  N +STAKY+++TF P FL+ QFRR +N FF
Sbjct: 22  DDVSEKTSLADQEEVRTIFINQPQLTKFCNNHVSTAKYNIITFLPRFLYSQFRRAANSFF 81

Query: 89  LFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNG 148
           LFIALLQQIPDVSPTGRYTTL+PL+ I+ V+ IKEIIEDIKRH AD  +N +   V+RNG
Sbjct: 82  LFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRNG 141

Query: 149 MIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
              +  W+ + VG+IVKV N    P DL+ LS+
Sbjct: 142 AWEIVHWEKVAVGEIVKVTNGEHLPADLISLSS 174

May play a role in the transport of aminophospholipids from the outer to the inner leaflet of various membranes and the maintenance of asymmetric distribution of phospholipids, mainly in secretory vesicles.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q29449|AT8A1_BOVIN Probable phospholipid-transporting ATPase IA OS=Bos taurus GN=ATP8A1 PE=1 SV=2

 Score =  172 bits (437), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 3/153 (1%)

Query: 32  DTVDCITGKADH---RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFF 88
           D V   T  AD    R I IN PQ  KF  N +STAKY+++TF P FL+ QFRR +N FF
Sbjct: 22  DDVSEKTSLADQEEIRTIFINQPQLTKFCNNHVSTAKYNIITFLPRFLYSQFRRAANSFF 81

Query: 89  LFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNG 148
           LFIALLQQIPDVSPTGRYTTL+PL+ I+ V+ IKEIIEDIKRH AD  +N +   V+RNG
Sbjct: 82  LFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRNG 141

Query: 149 MIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
              +  W+ + VGDIV +    + P D ++LS+
Sbjct: 142 AWEIVHWEKVNVGDIVIIKGKEYIPADTVLLSS 174

May play a role in the transport of aminophospholipids from the outer to the inner leaflet of various membranes and the maintenance of asymmetric distribution of phospholipids, mainly in secretory vesicles.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P70704|AT8A1_MOUSE Probable phospholipid-transporting ATPase IA OS=Mus musculus GN=Atp8a1 PE=1 SV=1

 Score =  172 bits (437), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 105/153 (68%), Gaps = 3/153 (1%)

Query: 32  DTVDCITGKADH---RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFF 88
           D V   T  AD    R I IN PQ  KF  N +STAKY+++TF P FL+ QFRR +N FF
Sbjct: 22  DDVSEKTSLADQEEVRTIFINQPQLTKFCNNHVSTAKYNVITFLPRFLYSQFRRAANSFF 81

Query: 89  LFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNG 148
           LFIALLQQIPDVSPTGRYTTL+PL+ I+ V+ IKEIIEDIKRH AD  +N +   V+RNG
Sbjct: 82  LFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQTQVLRNG 141

Query: 149 MIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
              +  W+ + VGDIV +    + P D ++LS+
Sbjct: 142 AWEIVHWEKVNVGDIVIIKGKEYIPADTVLLSS 174

May play a role in the transport of aminophospholipids from the outer to the inner leaflet of various membranes and the maintenance of asymmetric distribution of phospholipids, mainly in secretory vesicles.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|O94296|YOOC_SCHPO Probable phospholipid-transporting ATPase C887.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC887.12 PE=3 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 97/138 (70%)

Query: 44  RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPT 103
           R I +N   +  F+ N +ST KYS  TF P FL EQF +Y+N+FFLF A++QQIP ++P 
Sbjct: 145 RQIILNDYSANHFLHNAVSTCKYSAFTFLPKFLKEQFSKYANLFFLFTAVVQQIPGITPV 204

Query: 104 GRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDI 163
            RYTT+ P+++++ VSGIKEI+EDIKR   D E+N     V++      +QWKD+ VGDI
Sbjct: 205 NRYTTIGPMLIVLSVSGIKEIMEDIKRKKQDQELNESPCYVLQGTGFVEKQWKDVVVGDI 264

Query: 164 VKVYNNSFFPGDLMVLST 181
           VK+ + +FFP DL++LS+
Sbjct: 265 VKIVSETFFPADLVLLSS 282

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P39524|ATC3_YEAST Probable phospholipid-transporting ATPase DRS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DRS2 PE=1 SV=2

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 99/148 (66%), Gaps = 5/148 (3%)

Query: 39  GKADHRVININ---APQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQ 95
           G  + RVI+IN   A  S  +  N IST KY+  TF P FLF++F +Y+N+FFL  + +Q
Sbjct: 178 GNGEPRVIHINDSLANSSFGYSDNHISTTKYNFATFLPKFLFQEFSKYANLFFLCTSAIQ 237

Query: 96  QIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGM-IYVEQ 154
           Q+P VSPT RYTT+  L+++++VS +KE IEDIKR  +D E+N+ + ++       +VE+
Sbjct: 238 QVPHVSPTNRYTTIGTLLVVLIVSAMKECIEDIKRANSDKELNNSTAEIFSEAHDDFVEK 297

Query: 155 -WKDLKVGDIVKVYNNSFFPGDLMVLST 181
            W D++VGDI++V +    P D ++LS+
Sbjct: 298 RWIDIRVGDIIRVKSEEPIPADTIILSS 325

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of phospholipids (Potential). Seems to be involved in ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5BL50|AT8B1_XENTR Probable phospholipid-transporting ATPase IC OS=Xenopus tropicalis GN=atp8b1 PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 88/130 (67%)

Query: 52  QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIP 111
           +  K+ GN I T KY+ +TF P  L+EQF+R +N +FL + +LQ IP +S     TTLIP
Sbjct: 86  KKSKYAGNAIKTYKYNPITFLPVNLYEQFKRAANAYFLVLLILQTIPQISTVTWSTTLIP 145

Query: 112 LILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSF 171
           L+L++ ++ IK++++DI RH  D EIN+R  +VI +G     +WK + VGDI+++  N F
Sbjct: 146 LLLVLGITAIKDLVDDIARHKMDNEINNRPSEVITDGRFKKTKWKHIHVGDIIRINKNEF 205

Query: 172 FPGDLMVLST 181
            P D+++LS+
Sbjct: 206 VPADVLLLSS 215

May play a role in the transport of aminophospholipids from the outer to the inner leaflet of various membranes and the maintenance of asymmetric distribution of phospholipids in the canicular membrane.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8TF62|AT8B4_HUMAN Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=2 SV=3

 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 97/142 (68%), Gaps = 4/142 (2%)

Query: 40  KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           KA+ R  N    +  ++  N+I T+KY+++TF P  LFEQF+R +N +FL + +LQ IP+
Sbjct: 16  KANDREYN----EKFQYADNRIHTSKYNILTFLPINLFEQFQRVANAYFLCLLILQLIPE 71

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           +S    +TT++PL+L++ ++ +K+  +D  RH +D ++N+R  +V+ N  +  E+W ++K
Sbjct: 72  ISSLTWFTTIVPLVLVITMTAVKDATDDYFRHKSDNQVNNRQSEVLINSKLQNEKWMNVK 131

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGDI+K+ NN F   DL++LS+
Sbjct: 132 VGDIIKLENNQFVAADLLLLSS 153

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|A3FIN4|AT8B5_MOUSE Probable phospholipid-transporting ATPase FetA OS=Mus musculus GN=Atp8b5 PE=2 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 89/127 (70%)

Query: 55  KFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLIL 114
           ++  N I T+KY    F P  LFEQF+R +N +FL +  LQ +P +S    YTT+IPLI+
Sbjct: 51  EYPDNSIKTSKYGFFNFLPMNLFEQFQRLANAYFLILLFLQLVPQISSLAWYTTVIPLIV 110

Query: 115 IMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPG 174
           ++ ++G+K+ I+D+KRH +D +IN+RSV ++ NG +   +W++++VGDI+K+ NN     
Sbjct: 111 VLSITGVKDAIDDVKRHRSDQQINNRSVSILVNGRVEEIKWRNVQVGDIIKLENNHPVTA 170

Query: 175 DLMVLST 181
           D+++LS+
Sbjct: 171 DMLLLSS 177

May play a role in phospholid transport across membranes and in acrosome formation.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
345496886	1306	PREDICTED: probable phospholipid-transpo	0.911	0.126	0.606	1e-50
194757653	1676	GF11187 [Drosophila ananassae] gi|190622	0.933	0.100	0.568	2e-50
242004602	1200	conserved hypothetical protein [Pediculu	0.889	0.134	0.574	5e-50
350396415	1221	PREDICTED: probable phospholipid-transpo	0.779	0.115	0.661	6e-50
340710616	1205	PREDICTED: probable phospholipid-transpo	0.779	0.117	0.661	6e-50
340710620	1221	PREDICTED: probable phospholipid-transpo	0.779	0.115	0.661	7e-50
340710614	1291	PREDICTED: probable phospholipid-transpo	0.779	0.109	0.661	7e-50
350396412	1291	PREDICTED: probable phospholipid-transpo	0.779	0.109	0.661	7e-50
307197731	1220	Probable phospholipid-transporting ATPas	0.856	0.127	0.608	1e-49
157110175	1155	phospholipid-transporting atpase 1 (amin	0.773	0.121	0.671	4e-49

>gi|345496886|ref|XP_003427844.1| PREDICTED: probable phospholipid-transporting ATPase IA-like [Nasonia vitripennis]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 126/173 (72%), Gaps = 8/173 (4%)

Query: 17  NPTSTGAG----GGS---QPTIDTVDCITGKADHRVININAP-QSCKFVGNKISTAKYSL 68
           +PTSTG G    GGS   Q T           D RV+ +NAP Q   +  N ISTAKYSL
Sbjct: 119 SPTSTGTGRAENGGSSLDQSTGGGGHGTGDIQDERVVFVNAPHQPATYRNNHISTAKYSL 178

Query: 69  VTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDI 128
           ++F P FLFEQFRRYSN FFLFIAL+QQIPDVSPTGRYTTL+PLI I+ VS +KEI+EDI
Sbjct: 179 LSFIPSFLFEQFRRYSNCFFLFIALMQQIPDVSPTGRYTTLVPLIFILSVSALKEIVEDI 238

Query: 129 KRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
           KRH AD EIN R V+V+R+G     QWK + VGD+VKV+NN+FFP DL++LS+
Sbjct: 239 KRHRADDEINKREVEVLRDGRWQWIQWKTVTVGDVVKVHNNNFFPADLILLSS 291

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757653|ref|XP_001961077.1| GF11187 [Drosophila ananassae] gi|190622375|gb|EDV37899.1| GF11187 [Drosophila ananassae]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 124/174 (71%), Gaps = 5/174 (2%)

Query: 8   ESSRKLISGNPTSTGAGGGSQPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYS 67
           E +RK   GNP +      S    D  D        RVIN+NAPQ+ K+  N+I+TAKYS
Sbjct: 437 EFARKYALGNPIAYDEDFTSSAGYDPDD-----GQKRVINLNAPQTTKYCNNRITTAKYS 491

Query: 68  LVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIED 127
            ++F P FLFEQFRRYSN FFL IA+LQQIP+VSPTGRYTTL+PL+ I+ VS IKEIIED
Sbjct: 492 FISFLPAFLFEQFRRYSNCFFLLIAMLQQIPEVSPTGRYTTLVPLMFILSVSAIKEIIED 551

Query: 128 IKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
           IKRH AD EINHRS++ + +G     +W +L VGDI+KV  N+FFP DL++LS+
Sbjct: 552 IKRHRADNEINHRSIERLDSGAWITVRWSELTVGDIIKVTINTFFPADLILLSS 605

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004602|ref|XP_002423169.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506134|gb|EEB10431.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 124/174 (71%), Gaps = 13/174 (7%)

Query: 8   ESSRKLISGNPTSTGAGGGSQPTIDTVDCITGKADHRVININAPQSCKFVGNKISTAKYS 67
           ES R  ++G   S  +GG  +P          + + R ININ  Q  KF  NK+STAKYS
Sbjct: 23  ESGRHNVAG---SINSGGTDEP----------EDNRRHININEEQISKFCSNKVSTAKYS 69

Query: 68  LVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIED 127
           L +F P FLFEQFR+YSNIFFLFIALLQQIPDVSPTGRYTTLIPL+ I+ VS +KEI+ED
Sbjct: 70  LFSFLPIFLFEQFRKYSNIFFLFIALLQQIPDVSPTGRYTTLIPLVFILTVSAVKEIVED 129

Query: 128 IKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
            KRH AD E NHR  +V+RNG     +W+++ VGDIVK+ NN FFP D+++LS+
Sbjct: 130 FKRHRADRETNHRKAEVLRNGHWDDVKWRNVVVGDIVKIRNNQFFPADVVLLSS 183

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396415|ref|XP_003484544.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 2 [Bombus impatiens]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 41  ADHRVININAPQS-CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           ++ RV+ INAPQ   K+  N+ISTAKYSL++F P FLFEQFRRYSN FFLFIAL+QQIPD
Sbjct: 52  SEERVVFINAPQQPAKYNNNRISTAKYSLLSFIPMFLFEQFRRYSNCFFLFIALMQQIPD 111

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R V+V+R+G     QW+++ 
Sbjct: 112 VSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMREVEVLRDGHWQWIQWRNIA 171

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGD+VKV+NN FFP DL++LS+
Sbjct: 172 VGDVVKVHNNKFFPADLILLSS 193

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710616|ref|XP_003393883.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 2 [Bombus terrestris]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 41  ADHRVININAPQS-CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           ++ RV+ INAPQ   K+  N+ISTAKYSL++F P FLFEQFRRYSN FFLFIAL+QQIPD
Sbjct: 52  SEERVVFINAPQQPAKYNNNRISTAKYSLLSFIPMFLFEQFRRYSNCFFLFIALMQQIPD 111

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R V+V+R+G     QW+++ 
Sbjct: 112 VSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMREVEVLRDGHWQWIQWRNIA 171

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGD+VKV+NN FFP DL++LS+
Sbjct: 172 VGDVVKVHNNKFFPADLILLSS 193

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710620|ref|XP_003393885.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 4 [Bombus terrestris]

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 41  ADHRVININAPQS-CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           ++ RV+ INAPQ   K+  N+ISTAKYSL++F P FLFEQFRRYSN FFLFIAL+QQIPD
Sbjct: 52  SEERVVFINAPQQPAKYNNNRISTAKYSLLSFIPMFLFEQFRRYSNCFFLFIALMQQIPD 111

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R V+V+R+G     QW+++ 
Sbjct: 112 VSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMREVEVLRDGHWQWIQWRNIA 171

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGD+VKV+NN FFP DL++LS+
Sbjct: 172 VGDVVKVHNNKFFPADLILLSS 193

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710614|ref|XP_003393882.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 1 [Bombus terrestris] gi|340710618|ref|XP_003393884.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 3 [Bombus terrestris]

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 41  ADHRVININAPQS-CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           ++ RV+ INAPQ   K+  N+ISTAKYSL++F P FLFEQFRRYSN FFLFIAL+QQIPD
Sbjct: 138 SEERVVFINAPQQPAKYNNNRISTAKYSLLSFIPMFLFEQFRRYSNCFFLFIALMQQIPD 197

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R V+V+R+G     QW+++ 
Sbjct: 198 VSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMREVEVLRDGHWQWIQWRNIA 257

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGD+VKV+NN FFP DL++LS+
Sbjct: 258 VGDVVKVHNNKFFPADLILLSS 279

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396412|ref|XP_003484543.1| PREDICTED: probable phospholipid-transporting ATPase IA-like isoform 1 [Bombus impatiens]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 41  ADHRVININAPQS-CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
           ++ RV+ INAPQ   K+  N+ISTAKYSL++F P FLFEQFRRYSN FFLFIAL+QQIPD
Sbjct: 138 SEERVVFINAPQQPAKYNNNRISTAKYSLLSFIPMFLFEQFRRYSNCFFLFIALMQQIPD 197

Query: 100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
           VSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R V+V+R+G     QW+++ 
Sbjct: 198 VSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMREVEVLRDGHWQWIQWRNIA 257

Query: 160 VGDIVKVYNNSFFPGDLMVLST 181
           VGD+VKV+NN FFP DL++LS+
Sbjct: 258 VGDVVKVHNNKFFPADLILLSS 279

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197731|gb|EFN78880.1| Probable phospholipid-transporting ATPase IA [Harpegnathos saltator]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 120/161 (74%), Gaps = 6/161 (3%)

Query: 22  GAGGGSQPTIDTVDCITGKADHRVININAP-QSCKFVGNKISTAKYSLVTFFPCFLFEQF 80
           G+ G  QP         G  + RVI +NAP Q  K+  N I+TAKYS ++F P FLFEQF
Sbjct: 37  GSQGEDQPPTQH-----GDNEERVIFVNAPHQPAKYKNNHITTAKYSFLSFVPLFLFEQF 91

Query: 81  RRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHR 140
           RRYSN FFLFIAL+QQIPDVSPTGRYTTL+PLI I+ VS +KEI+EDIKRH AD EIN R
Sbjct: 92  RRYSNCFFLFIALMQQIPDVSPTGRYTTLVPLIFILSVSALKEIVEDIKRHRADDEINMR 151

Query: 141 SVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
            V+V+R+G     QW+ L VGD+VKV+NN+FFP DL++LS+
Sbjct: 152 EVEVLRDGRWQWIQWRALAVGDVVKVHNNTFFPADLILLSS 192

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110175|ref|XP_001650984.1| phospholipid-transporting atpase 1 (aminophospholipid flippase 1) [Aedes aegypti] gi|108883935|gb|EAT48160.1| AAEL000767-PB [Aedes aegypti]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 110/140 (78%)

Query: 42  DHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS 101
           D RVI +N  Q  K+  N ISTAKYS +TF P FLFEQFRRYSN FFLFIALLQQIPDVS
Sbjct: 56  DKRVILLNQSQRQKYCNNHISTAKYSAITFIPSFLFEQFRRYSNCFFLFIALLQQIPDVS 115

Query: 102 PTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVG 161
           PTGRYTTL+PL+ I+ VS IKEI+EDIKRH AD EINHR ++ ++ G     +WK+L VG
Sbjct: 116 PTGRYTTLVPLLFILSVSAIKEIVEDIKRHRADDEINHREIETLQGGQWRWIKWKELSVG 175

Query: 162 DIVKVYNNSFFPGDLMVLST 181
           DIVKV NN+FFP DL+ LS+
Sbjct: 176 DIVKVQNNTFFPADLVQLSS 195

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
FB|FBgn0259221	1350	CG42321 [Drosophila melanogast	0.773	0.103	0.628	9.2e-44
UNIPROTKB|B7Z880	1123	ATP8A2 "cDNA FLJ61731, highly	0.784	0.126	0.591	1e-40
UNIPROTKB|Q9NTI2	1148	ATP8A2 "Probable phospholipid-	0.784	0.123	0.591	1.1e-40
UNIPROTKB|F1N7C2	1042	F1N7C2 "Uncharacterized protei	0.762	0.132	0.608	1.4e-40
UNIPROTKB|F1PNZ3	1188	ATP8A2 "Uncharacterized protei	0.784	0.119	0.591	1.5e-40
ZFIN|ZDB-GENE-060929-36	380	atp8a1 "ATPase, aminophospholi	0.861	0.410	0.518	3.3e-40
UNIPROTKB|D4A3X6	1024	LOC691889 "Protein LOC691889"	0.784	0.138	0.570	3.7e-40
MGI|MGI:1354710	1148	Atp8a2 "ATPase, aminophospholi	0.784	0.123	0.577	3.7e-40
UNIPROTKB|F1S3T6	650	ATP8A1 "Uncharacterized protei	0.856	0.238	0.559	4e-40
UNIPROTKB|F1P2K5	1046	ATP8A2 "Uncharacterized protei	0.784	0.135	0.591	1e-39

FB|FBgn0259221 CG42321 [Drosophila melanogaster (taxid:7227)]

 Score = 474 (171.9 bits), Expect = 9.2e-44, P = 9.2e-44
 Identities = 88/140 (62%), Positives = 112/140 (80%)

Query:    42 DHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS 101
             + R+IN+N PQ  K+  N+I+TAKYS ++F P FLFEQFRRYSN FFL IA+LQQIP+VS
Sbjct:   215 ERRIINLNGPQPTKYGNNRITTAKYSFISFLPAFLFEQFRRYSNCFFLLIAILQQIPEVS 274

Query:   102 PTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVG 161
             PTGRYTTL+PL+ I+ VS IKEIIEDIKRH AD EINHRS++ + +G     +W +L VG
Sbjct:   275 PTGRYTTLVPLMFILSVSAIKEIIEDIKRHRADNEINHRSIERLDSGSWCTVRWSELTVG 334

Query:   162 DIVKVYNNSFFPGDLMVLST 181
             DI+KV  N+FFP DL++LS+
Sbjct:   335 DIIKVGINTFFPADLILLSS 354

GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=ISS

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

UNIPROTKB|B7Z880 ATP8A2 "cDNA FLJ61731, highly similar to Probable phospholipid-transporting ATPase IB (EC 3.6.3.1)" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 1.0e-40, P = 1.0e-40
 Identities = 84/142 (59%), Positives = 108/142 (76%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R I +N P   KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct:    12 EAPARTIYLNQPHLNKFRDNQISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PLI+I+ ++GIKEI+ED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct:    72 VSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N  + P D+++LS+
Sbjct:   132 VGDIVKVVNGQYLPADVVLLSS 153

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NTI2 ATP8A2 "Probable phospholipid-transporting ATPase IB" [Homo sapiens (taxid:9606)]

 Score = 444 (161.4 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 84/142 (59%), Positives = 108/142 (76%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R I +N P   KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct:    12 EAPARTIYLNQPHLNKFRDNQISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PLI+I+ ++GIKEI+ED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct:    72 VSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N  + P D+++LS+
Sbjct:   132 VGDIVKVVNGQYLPADVVLLSS 153

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

UNIPROTKB|F1N7C2 F1N7C2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 442 (160.7 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 84/138 (60%), Positives = 105/138 (76%)

Query:    44 RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPT 103
             R I +N P   KF  N+ISTAKYS+VTF P FL+EQ RR +N FFLFIALLQQIPDVSPT
Sbjct:    41 RTIYLNQPHLNKFCDNQISTAKYSVVTFLPRFLYEQIRRAANAFFLFIALLQQIPDVSPT 100

Query:   104 GRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDI 163
             GRYTTL+PLI+I+ ++GIKEI+ED KRH AD  +N +   V+RNGM     WK++ VGDI
Sbjct:   101 GRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWQTIVWKEVAVGDI 160

Query:   164 VKVYNNSFFPGDLMVLST 181
             VKV N  + P D+++LS+
Sbjct:   161 VKVVNGQYLPADVVLLSS 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|F1PNZ3 ATP8A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 1.5e-40, P = 1.5e-40
 Identities = 84/142 (59%), Positives = 107/142 (75%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R I +N P   KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct:    52 EAPARTIYLNQPHLNKFRDNQISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 111

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PLI+I+ ++GIKEI+ED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct:   112 VSPTGRYTTLVPLIIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 171

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N  + P D+ +LS+
Sbjct:   172 VGDIVKVINGQYLPADMALLSS 193

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

ZFIN|ZDB-GENE-060929-36 atp8a1 "ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1" [Danio rerio (taxid:7955)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 82/158 (51%), Positives = 113/158 (71%)

Query:    26 GSQPTIDTVD--CITGKADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRY 83
             G + T DT +   +  + D R+I I+ PQ  KF  N++STAKY+++TF P FL+ QFRR 
Sbjct:    17 GYEKTEDTSEKTSLADQEDSRLIFISQPQFTKFCSNRVSTAKYNVLTFLPRFLYSQFRRA 76

Query:    84 SNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVD 143
             +N FFLFIALLQQIPDVSPTGR+TTL+PL+ I+VV+ +KEIIED+KRH AD  +N +   
Sbjct:    77 ANSFFLFIALLQQIPDVSPTGRWTTLVPLLFILVVAAVKEIIEDLKRHNADNVVNKKETQ 136

Query:   144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
             V+RNG   +  W+ + VG+IV+  N    P DL++LS+
Sbjct:   137 VLRNGAWEIVHWEKVSVGEIVRAANGDHLPADLIILSS 174

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

UNIPROTKB|D4A3X6 LOC691889 "Protein LOC691889" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 3.7e-40, P = 3.7e-40
 Identities = 81/142 (57%), Positives = 107/142 (75%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R+I +N     KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct:    12 EAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PL++I+ ++GIKEI+ED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct:    72 VSPTGRYTTLVPLVIILTIAGIKEIVEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N  + P D+++ S+
Sbjct:   132 VGDIVKVLNGQYLPADMVLFSS 153

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0031175 "neuron projection development" evidence=IGI;IMP

MGI|MGI:1354710 Atp8a2 "ATPase, aminophospholipid transporter-like, class I, type 8A, member 2" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 3.7e-40, P = 3.7e-40
 Identities = 82/142 (57%), Positives = 107/142 (75%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R+I +N     KF  N+ISTAKYS++TF P FL+EQ RR +N FFLFIALLQQIPD
Sbjct:    12 EAPARIIYLNQSHLNKFCDNRISTAKYSVLTFLPRFLYEQIRRAANAFFLFIALLQQIPD 71

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PL++I+ ++GIKEIIED KRH AD  +N +   V+RNGM +   WK++ 
Sbjct:    72 VSPTGRYTTLVPLVIILTIAGIKEIIEDFKRHKADNAVNKKKTIVLRNGMWHTIMWKEVA 131

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N  + P D+++ S+
Sbjct:   132 VGDIVKVLNGQYLPADMVLFSS 153

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0003011 "involuntary skeletal muscle contraction" evidence=IMP

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007568 "aging" evidence=IMP

GO:0015914 "phospholipid transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0031175 "neuron projection development" evidence=ISO

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0042755 "eating behavior" evidence=IMP

GO:0043588 "skin development" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048666 "neuron development" evidence=IMP

GO:0050884 "neuromuscular process controlling posture" evidence=IMP

UNIPROTKB|F1S3T6 ATP8A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 430 (156.4 bits), Expect = 4.0e-40, P = 4.0e-40
 Identities = 89/159 (55%), Positives = 109/159 (68%)

Query:    26 GSQPTIDTVDCITGKADH---RVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRR 82
             G + T D V   T  AD    R I IN PQ  KF  N +STAKY+++TF P FL+ QFRR
Sbjct:    17 GYEKT-DDVSEKTSLADQEEVRTIFINQPQLTKFCNNHVSTAKYNIITFLPRFLYSQFRR 75

Query:    83 YSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSV 142
              +N FFLFIALLQQIPDVSPTGRYTTL+PL+ I+ V+ IKEIIEDIKRH AD  +N +  
Sbjct:    76 AANSFFLFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIKEIIEDIKRHKADNAVNKKQT 135

Query:   143 DVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
              V+RNG   +  W+ + VG+IVKV N    P DL+ LS+
Sbjct:   136 QVLRNGAWEIVHWEKVAVGEIVKVTNGEHLPADLISLSS 174

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|F1P2K5 ATP8A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 434 (157.8 bits), Expect = 1.0e-39, P = 1.0e-39
 Identities = 84/142 (59%), Positives = 105/142 (73%)

Query:    40 KADHRVININAPQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD 99
             +A  R I +N PQ  KF  N +STAKYS+VTF P FL+EQ R+ +N FFLFIALLQQIPD
Sbjct:    31 EAPARTIYVNQPQQSKFRDNWVSTAKYSVVTFLPRFLYEQIRKAANAFFLFIALLQQIPD 90

Query:   100 VSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLK 159
             VSPTGRYTTL+PL+ I+ V+GIKEIIED KRH AD  +N +   V+RNGM     WK++ 
Sbjct:    91 VSPTGRYTTLVPLLFILTVAGIKEIIEDYKRHKADSAVNKKKTVVLRNGMWQDIVWKEVA 150

Query:   160 VGDIVKVYNNSFFPGDLMVLST 181
             VGDIVKV N    P D++++S+
Sbjct:   151 VGDIVKVTNGQHLPADMIIISS 172

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P98200	AT8A2_MOUSE	3, ., 6, ., 3, ., 1	0.5774	0.7845	0.1236	yes	N/A
Q9NTI2	AT8A2_HUMAN	3, ., 6, ., 3, ., 1	0.5915	0.7845	0.1236	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
TIGR01652	1057	TIGR01652, ATPase-Plipid, phospholipid-translocati	2e-52
PLN03190	1178	PLN03190, PLN03190, aminophospholipid translocase;	1e-33
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-14
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	1e-11
pfam00122	222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	0.001

>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase

 Score =  178 bits (454), Expect = 2e-52
 Identities = 65/127 (51%), Positives = 94/127 (74%), Gaps = 1/127 (0%)

Query: 56  FVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILI 115
           F  NKIST KY+++TF P  LFEQF+R++N++FL +ALLQQ+P +SPT R T+++PL  +
Sbjct: 1   FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFV 60

Query: 116 MVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVE-QWKDLKVGDIVKVYNNSFFPG 174
           ++V+ IKE IEDI+R   D E+N+R  +V+     +VE  WKDL+VGDIVKV  +   P 
Sbjct: 61  LIVTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPA 120

Query: 175 DLMVLST 181
           DL++LS+
Sbjct: 121 DLLLLSS 127

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes. Length = 1057

>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional

 Score =  125 bits (315), Expect = 1e-33
 Identities = 56/144 (38%), Positives = 93/144 (64%), Gaps = 4/144 (2%)

Query: 42  DHRVININAPQSC----KFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQI 97
           D R++ +N P+      +F GN I TAKYS+ +F P  LFEQF R + I+FL IA+L Q+
Sbjct: 69  DARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQL 128

Query: 98  PDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKD 157
           P ++  GR  +++PL  +++V+ +K+  ED +RH +D   N+R   V+ +     ++WKD
Sbjct: 129 PQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKD 188

Query: 158 LKVGDIVKVYNNSFFPGDLMVLST 181
           ++VG+I+K+  N   P D+++LST
Sbjct: 189 IRVGEIIKIQANDTLPCDMVLLST 212

Length = 1178

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 59  NKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIM-V 117
                 +    +    FL +    +  +  +   L   + D    G    +I L++++  
Sbjct: 58  GPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVDAIVILLVVVINA 117

Query: 118 VSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLM 177
           + G  +     K   A  +++     V+R+G        +L  GDIV +      P DL 
Sbjct: 118 LLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLR 177

Query: 178 VLST 181
           +L +
Sbjct: 178 LLES 181

Length = 917

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVK 165
           +   + L+ +++V   K   EDI R L+D  +N R   V+RNG   +   KDL  GD+V 
Sbjct: 1   FILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNGWKEIPA-KDLVPGDVVL 59

Query: 166 VYNNSFFPGDLMVLST 181
           V +    P D ++LS 
Sbjct: 60  VKSGETVPADGVLLSG 75

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 112 LILIMVVSGIKEIIEDIKRHLADGEIN----HRSVDVIRNGMIYVEQWKDLKVGDIVKVY 167
           ++L+++++ + E  ++ +   A   +       +  VIR+G        +L VGDIV + 
Sbjct: 2   ILLLVLINALLEAYQEYRARKALKALKKLLPPTAATVIRDGKEEEIPADELVVGDIVLLK 61

Query: 168 NNSFFPGDLMVLS 180
                P D  ++ 
Sbjct: 62  PGDRVPADGRIIE 74

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PLN03190	1178	aminophospholipid translocase; Provisional	100.0
KOG0206|consensus	1151		99.97
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	99.97
KOG0210|consensus	1051		99.89
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.87
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.84
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.83
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.83
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.83
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.83
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.82
PRK15122	903	magnesium-transporting ATPase; Provisional	99.81
KOG0202|consensus	972		99.81
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.8
KOG0204|consensus	1034		99.76
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.76
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.73
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.56
KOG0205|consensus	942		99.53
PRK01122	679	potassium-transporting ATPase subunit B; Provision	99.43
PRK14010	673	potassium-transporting ATPase subunit B; Provision	99.4
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	99.36
KOG0203|consensus	1019		99.32
KOG0208|consensus	1140		99.26
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.23
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.17
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.12
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.04
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	98.88
PRK10671	834	copA copper exporting ATPase; Provisional	98.78
KOG0209|consensus	1160		98.69
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.5
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	98.02
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	97.97
KOG0207|consensus	951		97.75
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	97.74
KOG4383|consensus	1354		92.45
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	81.54
KOG0210|consensus	1051		80.57

>PLN03190 aminophospholipid translocase; Provisional

Probab=100.00  E-value=2.8e-33  Score=273.13  Aligned_cols=143  Identities=39%  Similarity=0.727  Sum_probs=135.6

Q ss_pred             CCCCceEEEcCCCc----cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHH
Q psy5837          39 GKADHRVININAPQ----SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLIL  114 (181)
Q Consensus        39 ~~~~~r~i~~n~~~----~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~  114 (181)
                      ...+.|.|++|++.    ..+|++|.|+|+||++|+|+|++||+||++++|+|||+++++|++|.+++.+++++++||++
T Consensus        66 ~~~~~r~i~~~~~~~~~~~~~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~  145 (1178)
T PLN03190         66 SDEDARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAF  145 (1178)
T ss_pred             ccCCceEEEcCCCCcccccccCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHH
Confidence            34568999999862    34699999999999999999999999999999999999999999999999899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         115 IMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       115 vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |++++++++++||++|+++|+++|++.++|+|+|.+++++|+||+|||||++++||.+|||+++|+|
T Consensus       146 vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~S  212 (1178)
T PLN03190        146 VLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLST  212 (1178)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999974

>KOG0206|consensus

Probab=99.97  E-value=4.4e-31  Score=254.01  Aligned_cols=142  Identities=48%  Similarity=0.844  Sum_probs=134.4

Q ss_pred             CCCCceEEEcCCCcc-----ccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHH
Q psy5837          39 GKADHRVININAPQS-----CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLI  113 (181)
Q Consensus        39 ~~~~~r~i~~n~~~~-----~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~  113 (181)
                      ..+.+|+++.|.+..     .+|..|+|+|+||++++|+|++||+||++++|+|||++++++++| +++.+++++++||+
T Consensus        10 ~~~~~R~~~~n~~~~~~~~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~~~~~~~~~~pl~   88 (1151)
T KOG0206|consen   10 RPGFSRVVYCNDPLPFEAPQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIP-LSPFNPYTTLVPLL   88 (1151)
T ss_pred             cCCCceEEeCCCCCcchhhhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccCccceeecee
Confidence            456789999999733     489999999999999999999999999999999999999999999 88999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCE-EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         114 LIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       114 ~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +|+.++++|+++||++|+++|+++|+.+|+|+|++. +.+..|++|+|||+|++..+|.+|||++||+|
T Consensus        89 ~vl~~t~iKd~~eD~rR~~~D~~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLss  157 (1151)
T KOG0206|consen   89 FVLGITAIKDAIEDYRRHKQDKEVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSS  157 (1151)
T ss_pred             eeehHHHHHHHHhhhhhhhccHHhhcceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecC
Confidence            999999999999999999999999999999999643 89999999999999999999999999999986

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=99.97  E-value=1.6e-30  Score=252.60  Aligned_cols=126  Identities=51%  Similarity=0.880  Sum_probs=122.5

Q ss_pred             ccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5837          56 FVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADG  135 (181)
Q Consensus        56 yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~  135 (181)
                      |++|.++|+||++|+|+|+.||+||++++|+|||+++++|++|++++.+++++++||+++++++++++++||++|+++|+
T Consensus         1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~   80 (1057)
T TIGR01652         1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK   80 (1057)
T ss_pred             CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            78999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             hhccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         136 EINHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       136 ~~n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++|++.|+|+|+ |++++++|+||+|||||+|++||.||||+++|+|
T Consensus        81 ~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~s  127 (1057)
T TIGR01652        81 EVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSS  127 (1057)
T ss_pred             HHhCcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEec
Confidence            999999999997 8999999999999999999999999999999974

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>KOG0210|consensus

Probab=99.89  E-value=5.2e-23  Score=188.37  Aligned_cols=140  Identities=34%  Similarity=0.550  Sum_probs=126.3

Q ss_pred             CCceEEEcCC---CccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHH
Q psy5837          41 ADHRVININA---PQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMV  117 (181)
Q Consensus        41 ~~~r~i~~n~---~~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~  117 (181)
                      ...|++.+..   ..+.+|.+|.+...||++++|+|..+++||+.+.|+|||+.++.|++|.+......+.+.|+.+|+.
T Consensus        61 l~~rt~~~~~~~~~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~  140 (1051)
T KOG0210|consen   61 LHGRTVNISFGPHYRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLT  140 (1051)
T ss_pred             ccCceeecccCCCcccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHH
Confidence            3456666654   3578899999999999999999999999999999999999999999988766667889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccceEE-ECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         118 VSGIKEIIEDIKRHLADGEINHRSVDVI-RNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       118 i~~i~~~~~d~~~~k~d~~~n~~~~~Vl-R~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +++++++++|++|++.|++.|+.+.+++ |+|...+ ++++|.|||+|.+++|++||||+++|.+
T Consensus       141 itl~keavdd~~r~~rd~~~Nse~y~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrT  204 (1051)
T KOG0210|consen  141 ITLIKEAVDDLKRRRRDRELNSEKYTKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRT  204 (1051)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhheeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEc
Confidence            9999999999999999999999999988 6665555 9999999999999999999999999974

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.87  E-value=8.6e-22  Score=191.47  Aligned_cols=122  Identities=17%  Similarity=0.165  Sum_probs=105.7

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH  131 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~  131 (181)
                      .+++||.|+++.++..++   ++.+++||.++++++++++++++++.     +.+...+.++++++++++.+++||++..
T Consensus        35 rl~~~G~N~l~~~~~~s~---~~~~l~q~~~~~~~iL~~aails~~~-----~~~~~~~iIl~vv~in~~i~~~QE~~ae  106 (1053)
T TIGR01523        35 RLKEVGENRLEADSGIDA---KAMLLHQVCNAMCMVLIIAAAISFAM-----HDWIEGGVISAIIALNILIGFIQEYKAE  106 (1053)
T ss_pred             HHHHcCCCCCCCCCCCCH---HHHHHHHHhCHHHHHHHHHHHHHHHH-----hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            367899999999887654   36789999999999999999999875     3445566777788899999999999998


Q ss_pred             Hhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         132 LADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       132 k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++.+++   ...+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus       107 kal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~  159 (1053)
T TIGR01523       107 KTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIET  159 (1053)
T ss_pred             HHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEe
Confidence            876554   45789999999999999999999999999999999999999975

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.84  E-value=1.2e-20  Score=182.97  Aligned_cols=126  Identities=16%  Similarity=0.162  Sum_probs=106.0

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcc-cC-------CCCcchhhHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD-VS-------PTGRYTTLIPLILIMVVSGIKEI  124 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~-i~-------~~~~~~~~~~l~~vl~i~~i~~~  124 (181)
                      +++||.|+++.++.+++   ++.|++||.++++++++++++++++.. +.       ..+.+...++++++++++++.++
T Consensus        46 l~~~G~N~l~~~~~~~~---~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~  122 (997)
T TIGR01106        46 LARDGPNALTPPPTTPE---WVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSY  122 (997)
T ss_pred             HHHhCCCCCCCCCCCCH---HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            67899999998877654   367899999999999999998877642 11       01234456678888899999999


Q ss_pred             HHHHHHHHhhhhhcc---ccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         125 IEDIKRHLADGEINH---RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       125 ~~d~~~~k~d~~~n~---~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +|+++++++.+++++   .+++|+|||++++|+++||||||+|.|++||.||||++|+++
T Consensus       123 ~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~  182 (997)
T TIGR01106       123 YQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISA  182 (997)
T ss_pred             HHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence            999999998887765   589999999999999999999999999999999999999974

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.83  E-value=2e-20  Score=180.46  Aligned_cols=125  Identities=18%  Similarity=0.277  Sum_probs=94.6

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC--------C-CCcchhhHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS--------P-TGRYTTLIPLILIMVVSGIKE  123 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~--------~-~~~~~~~~~l~~vl~i~~i~~  123 (181)
                      +++||+|+++.++.++++   +.+++||+++++++|+++++++++.++.        + .+|+. .+.++++++++.+.+
T Consensus        70 ~~~yG~N~l~~~~~~s~~---~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~-~~~il~~v~~~~~i~  145 (941)
T TIGR01517        70 EKVYGKNELPEKPPKSFL---QIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIE-GVAILVSVILVVLVT  145 (941)
T ss_pred             HHHhCCCCCCCCCCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHH-HHHHHHHHHHHhHHH
Confidence            567999999999887543   6789999999999999999999885421        1 12333 333333334444445


Q ss_pred             HHHHHHHHHh----hhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         124 IIEDIKRHLA----DGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       124 ~~~d~~~~k~----d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++++++..++    ++..++.+++|+|||++++|+++||||||||.|++||.||||++++++
T Consensus       146 ~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g  207 (941)
T TIGR01517       146 AVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISG  207 (941)
T ss_pred             HHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEc
Confidence            5566555543    333456789999999999999999999999999999999999999974

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.83  E-value=2.9e-20  Score=178.37  Aligned_cols=122  Identities=13%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHc-cchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQF-RRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKR  130 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf-~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~  130 (181)
                      .+++||.|+++.++.+++   ++.+++|| +++++++++++++++++.+     .|...+.++++++++++.+++||++.
T Consensus        33 r~~~~G~N~i~~~~~~s~---~~~~l~~~~~~~~~~~L~~aa~ls~~~g-----~~~~~~~i~~~i~~~~~i~~~qe~~a  104 (884)
T TIGR01522        33 RRAFHGWNEFDVEEDESL---WKKFLSQFVKNPLILLLIASAVISVFMG-----NIDDAVSITLAILIVVTVGFVQEYRS  104 (884)
T ss_pred             HHHhcCCCcCCCCCCCCH---HHHHHHHHhhChHHHHHHHHHHHHHHHc-----chhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            367899999998877654   36789999 9999999999999988753     33344445555667778899999988


Q ss_pred             HHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         131 HLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       131 ~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      .++.++++   ..+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus       105 ~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g  158 (884)
T TIGR01522       105 EKSLEALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEA  158 (884)
T ss_pred             HHHHHHHhccCCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEc
Confidence            88766554   5689999999999999999999999999999999999999974

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.83  E-value=3.3e-20  Score=175.44  Aligned_cols=121  Identities=16%  Similarity=0.199  Sum_probs=101.6

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH  131 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~  131 (181)
                      .+++||.|+++.++.++|    +.|++||+++++++++++++++++.+     .+...+.++++++++++.+++||++..
T Consensus        10 r~~~~G~N~~~~~~~~~~----~~~~~~~~~~~~~lL~~aa~~s~~~~-----~~~~~~~i~~~~~i~~~i~~~qe~~a~   80 (755)
T TIGR01647        10 RLAKYGPNELPEKKVSPL----LKFLGFFWNPLSWVMEAAAIIAIALE-----NWVDFVIILGLLLLNATIGFIEENKAG   80 (755)
T ss_pred             HHHhcCCCCCCCCCCCHH----HHHHHHHhchHHHHHHHHHHHHHhhc-----chhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            367899999998555432    66889999999999999999998753     344455666677788888999999988


Q ss_pred             Hhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         132 LADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       132 k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++.+.+   ...+++|+|||++++|+.+||||||||.|++||.||||++++++
T Consensus        81 ~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g  133 (755)
T TIGR01647        81 NAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEG  133 (755)
T ss_pred             HHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEec
Confidence            776554   45789999999999999999999999999999999999999974

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.83  E-value=5.5e-20  Score=176.69  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=103.9

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL  132 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k  132 (181)
                      +++||.|+++.++.+++   ++.|++||+++++++++++++++++.     +.+...+.++++++++++.+++++++..+
T Consensus        77 ~~~~G~N~l~~~~~~s~---~~~~~~~~~~p~~~lL~~aa~ls~~~-----~~~~~a~~I~~iv~i~~~i~~~qe~ra~~  148 (902)
T PRK10517         77 REQHGENELPAQKPLPW---WVHLWVCYRNPFNILLTILGAISYAT-----EDLFAAGVIALMVAISTLLNFIQEARSTK  148 (902)
T ss_pred             HHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999988755   37789999999999999999999874     34556666777888899999999999887


Q ss_pred             hhhhh---ccccceEEEC------CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         133 ADGEI---NHRSVDVIRN------GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       133 ~d~~~---n~~~~~VlR~------g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +.+++   ...+++|+||      |++++|+++||||||||.|++||.||||++|+++
T Consensus       149 ~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g  206 (902)
T PRK10517        149 AADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQA  206 (902)
T ss_pred             HHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEc
Confidence            65544   4578999999      7899999999999999999999999999999974

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.82  E-value=1e-19  Score=174.32  Aligned_cols=122  Identities=17%  Similarity=0.249  Sum_probs=103.7

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH  131 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~  131 (181)
                      .+++||.|+++.++.+++   ++.+++||+++++++++++++++++.     +.+...+.++++++++++.+++++++..
T Consensus        42 r~~~~G~N~l~~~~~~~~---~~~~~~~~~~p~~~iL~~~a~ls~~~-----~~~~~~~iI~~iv~~~~~i~~~~e~~a~  113 (867)
T TIGR01524        42 RLAEFGPNQTVEEKKVPN---LRLLIRAFNNPFIYILAMLMGVSYLT-----DDLEATVIIALMVLASGLLGFIQESRAE  113 (867)
T ss_pred             HHHhcCCCcCCCCCCCCH---HHHHHHHHhhHHHHHHHHHHHHHHHH-----hhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            367899999999887643   37789999999999999999999874     3455566677778889899999999887


Q ss_pred             Hhhhh---hccccceEEE------CCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         132 LADGE---INHRSVDVIR------NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       132 k~d~~---~n~~~~~VlR------~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++.++   +...+++|+|      ||++++|+++||||||||.+++||.||||++++++
T Consensus       114 ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g  172 (867)
T TIGR01524       114 RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISA  172 (867)
T ss_pred             HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEec
Confidence            76544   4457899999      99999999999999999999999999999999974

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.81  E-value=1.5e-19  Score=173.69  Aligned_cols=127  Identities=17%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC-C-----CCcchhhHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS-P-----TGRYTTLIPLILIMVVSGIKEII  125 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~-~-----~~~~~~~~~l~~vl~i~~i~~~~  125 (181)
                      .+++||+|+++.++.+++   ++.|++||+++++++|+++++++++.+.. +     .+.+...+.++++++++++.+++
T Consensus        54 rl~~~G~N~l~~~~~~~~---~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~  130 (903)
T PRK15122         54 RLQRYGPNEVAHEKPPHA---LVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFW  130 (903)
T ss_pred             HHHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHH
Confidence            367899999999887654   26789999999999999999999876421 0     12345566677788889999999


Q ss_pred             HHHHHHHhhhhh---ccccceEEEC------CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         126 EDIKRHLADGEI---NHRSVDVIRN------GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       126 ~d~~~~k~d~~~---n~~~~~VlR~------g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |+++..++.+++   ...+++|+||      |++++|+++||||||||.|++||.||||++|+++
T Consensus       131 qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g  195 (903)
T PRK15122        131 QEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES  195 (903)
T ss_pred             HHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence            999988776554   4578999999      4899999999999999999999999999999974

>KOG0202|consensus

Probab=99.81  E-value=5.8e-21  Score=177.84  Aligned_cols=122  Identities=18%  Similarity=0.260  Sum_probs=104.2

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH  131 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~  131 (181)
                      .+++||.|+++.....++   |+.+++||.+++..+||..|+++++..     ++...+.+.++++++++.+++|||+..
T Consensus        32 r~~~yG~Nel~~ee~~~~---wk~vLeQF~n~Li~iLL~sA~ISfvl~-----~~~e~~vI~liiv~nvtVG~~QEy~aE  103 (972)
T KOG0202|consen   32 RRKKYGENELPAEEGESL---WKLVLEQFDNPLILILLLSAAISFVLA-----DFDEPFVITLIIVINVTVGFVQEYNAE  103 (972)
T ss_pred             HHHhcCCccCccccCCcH---HHHHHHHHHhHHHHHHHHHHHHHHHHH-----hcccceeeeeeeeeeeeeeeeeehhhH
Confidence            367899999999888765   378999999999999999999999853     333444455566678888999999999


Q ss_pred             Hhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         132 LADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       132 k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |+.++++   .+.|+|+|+|+.+.++++||||||||.|+-||+||||+||++.
T Consensus       104 kalEaLk~l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~  156 (972)
T KOG0202|consen  104 KALEALKELVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEA  156 (972)
T ss_pred             HHHHHHHhcCCccceEEecCcccceehhccCCCCEEEEecCCccccceeEEee
Confidence            9876555   5789999999999999999999999999999999999999873

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.8e-19  Score=173.36  Aligned_cols=124  Identities=22%  Similarity=0.305  Sum_probs=101.4

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS-PTGRYTTLIPLILIMVVSGIKEIIEDIKRH  131 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~-~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~  131 (181)
                      +++||.|++...+...+   ++.++.||.++++++|+++++++++.+.. +..  .....++.+++++++..++|+++..
T Consensus        54 ~~~~G~N~~~~~~~~~~---~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~--~~~~~I~~~i~~n~~~g~~qe~~a~  128 (917)
T COG0474          54 LKKYGPNELPEEKKRSL---LKKFLRQFKDPFIILLLVAALLSAFVGDWVDAG--VDAIVILLVVVINALLGFVQEYRAE  128 (917)
T ss_pred             HhhcCCccccccccCcH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--cceeeehHHHHHHHHHHHHHHHHHH
Confidence            56799999998877654   26688999999999999999998875321 111  3334555567788888999999987


Q ss_pred             Hh---hhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         132 LA---DGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       132 k~---d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++   .+++++.+++|+|||++++|+|+||||||||+|++||.||||++||++
T Consensus       129 ~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~  181 (917)
T COG0474         129 KALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLES  181 (917)
T ss_pred             HHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEe
Confidence            65   456667899999999999999999999999999999999999999985

>KOG0204|consensus

Probab=99.76  E-value=3.3e-19  Score=166.32  Aligned_cols=126  Identities=19%  Similarity=0.239  Sum_probs=107.1

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC----CCCcchhhHH---HHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS----PTGRYTTLIP---LILIMVVSGIKEII  125 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~----~~~~~~~~~~---l~~vl~i~~i~~~~  125 (181)
                      ++-||.|.++.++.+.+   +.++||.|++...++|+++|++++..++.    ..+|+....+   +++|++++|+.++-
T Consensus       129 r~~fG~N~~p~k~~K~F---l~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~  205 (1034)
T KOG0204|consen  129 RKIFGSNTYPEKPPKGF---LRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYR  205 (1034)
T ss_pred             HHhcCCCCCCCCCCccH---HHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhH
Confidence            56799999999988754   26799999999999999999999987664    2356654333   34566788888888


Q ss_pred             HHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         126 EDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       126 ~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |+.|-++.+++..+.++.|+|||+.++|+..|||||||+.|+.||++|||++++++
T Consensus       206 qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~g  261 (1034)
T KOG0204|consen  206 QELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQG  261 (1034)
T ss_pred             HhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEec
Confidence            88888888888888999999999999999999999999999999999999999975

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.76  E-value=6e-18  Score=164.94  Aligned_cols=120  Identities=23%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL  132 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k  132 (181)
                      +++||.|++..++.++    ++.++++|.+|+++++++++++.++     .+.+...+.++++++++.+..++++++..+
T Consensus       149 ~~~yG~N~i~~~~~s~----~~ll~~~~~~p~~i~~i~~~~l~~~-----~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~  219 (1054)
T TIGR01657       149 KAKYGKNEIEIPVPSF----LELLKEEVLHPFYVFQVFSVILWLL-----DEYYYYSLCIVFMSSTSISLSVYQIRKQMQ  219 (1054)
T ss_pred             HHhcCCCeeecCCCCH----HHHHHHHHhchHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999876433    3778999999998877776555443     233445555566677778888888887776


Q ss_pred             hhhhhc--cccceEEECCEEEEEecccCccCcEEEec--CCCEecCcEEEeeC
Q psy5837         133 ADGEIN--HRSVDVIRNGMIYVEQWKDLKVGDIVKVY--NNSFFPGDLMVLST  181 (181)
Q Consensus       133 ~d~~~n--~~~~~VlR~g~~~~I~~~dLvvGDIV~L~--~Gd~vPAD~~LL~S  181 (181)
                      +.+++.  ...++|+|||++++|+++||||||||.|+  +||.||||++|+++
T Consensus       220 ~L~~~~~~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g  272 (1054)
T TIGR01657       220 RLRDMVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSG  272 (1054)
T ss_pred             HHHHhhcCCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeC
Confidence            665554  45899999999999999999999999999  99999999999974

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.73  E-value=2.3e-17  Score=159.04  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             HHHHccchHHHHHHHHHHHHHhcccCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cccceEEEC
Q psy5837          76 LFEQFRRYSNIFFLFIALLQQIPDVSP-----TGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEIN---HRSVDVIRN  147 (181)
Q Consensus        76 l~~qf~~~~ni~lL~iail~~i~~i~~-----~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n---~~~~~VlR~  147 (181)
                      +++||+++++++|+++++++++.++..     .+.+...+.++++++++++.+++|+++..++.+.++   ..+++|+||
T Consensus         1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd   80 (917)
T TIGR01116         1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD   80 (917)
T ss_pred             ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC
Confidence            368999999999999999999875432     123444555666777888889999999888766554   568999999


Q ss_pred             CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         148 GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       148 g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |++++|+++||||||||.|++||.||||++|+++
T Consensus        81 g~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~  114 (917)
T TIGR01116        81 GRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSL  114 (917)
T ss_pred             CEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEe
Confidence            9999999999999999999999999999999974

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.56  E-value=1.9e-14  Score=117.26  Aligned_cols=69  Identities=25%  Similarity=0.416  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc-ceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         112 LILIMVVSGIKEIIEDIKRHLADGEINH---RS-VDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       112 l~~vl~i~~i~~~~~d~~~~k~d~~~n~---~~-~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      ++++++++.+.++++++++++..+++++   .+ ++|+|||++++++|+||+|||||+|++||.+|||+++++
T Consensus         2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~   74 (230)
T PF00122_consen    2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLE   74 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred             EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCcccee
Confidence            4566778888899999999888877654   34 899999999999999999999999999999999999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>KOG0205|consensus

Probab=99.53  E-value=3.5e-15  Score=136.78  Aligned_cols=125  Identities=15%  Similarity=0.144  Sum_probs=94.0

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCC--CCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSP--TGRYTTLIPLILIMVVSGIKEIIEDIK  129 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~--~~~~~~~~~l~~vl~i~~i~~~~~d~~  129 (181)
                      .+++||.|++...|.+.+    +.|+.-|-+|..+..=.+|++.....-..  ...|..++.++..+++++...|+||++
T Consensus        45 Rlk~fG~NkleEkken~~----lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~DW~DF~gI~~LLliNsti~FveE~n  120 (942)
T KOG0205|consen   45 RLKIFGPNKLEEKKESKF----LKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPPDWQDFVGICCLLLINSTISFIEENN  120 (942)
T ss_pred             HHHhhCchhhhhhhhhHH----HHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhheeeeecceeeeeeccc
Confidence            367899999999888754    23445555666655555666654432110  113456666777788999999999998


Q ss_pred             HHHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         130 RHLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       130 ~~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      .-.+-.++.   ..+++|+|||+|.++.+.+||||||+.++.||.+|||++||+
T Consensus       121 AGn~aa~L~a~LA~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~  174 (942)
T KOG0205|consen  121 AGNAAAALMAGLAPKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLE  174 (942)
T ss_pred             cchHHHHHHhccCcccEEeecCeeeeeeccccccCceeeeccCCEecCccceec
Confidence            776543333   478999999999999999999999999999999999999986

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=99.43  E-value=8e-13  Score=123.90  Aligned_cols=104  Identities=16%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             HHccchHHHHHHHHHHHHHhcccCCC------Ccchh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----ccceE
Q psy5837          78 EQFRRYSNIFFLFIALLQQIPDVSPT------GRYTT---LIPLILIMVVSGIKEIIEDIKRHLADGEINH----RSVDV  144 (181)
Q Consensus        78 ~qf~~~~ni~lL~iail~~i~~i~~~------~~~~~---~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~----~~~~V  144 (181)
                      .||++++.+++++.++++++.++.+.      .+...   .+.+++.+++....+.+++++..++.+.+.+    .+++|
T Consensus        29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v  108 (679)
T PRK01122         29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK  108 (679)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            58899999999999999987643211      11111   2233333444445556666666655444433    36999


Q ss_pred             EECCE-EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         145 IRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       145 lR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +|+|. +++|+.+||++||+|.+++||.||||++++++
T Consensus       109 ir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG  146 (679)
T PRK01122        109 LREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEG  146 (679)
T ss_pred             EECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEc
Confidence            99987 89999999999999999999999999999874

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=99.40  E-value=1.4e-12  Score=122.09  Aligned_cols=104  Identities=14%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             HHccchHHHHHHHHHHHHHhcccCCC-----Cc-chhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhcc---c-cce
Q psy5837          78 EQFRRYSNIFFLFIALLQQIPDVSPT-----GR-YTTLIPLILIMVVSGIKEIIE----DIKRHLADGEINH---R-SVD  143 (181)
Q Consensus        78 ~qf~~~~ni~lL~iail~~i~~i~~~-----~~-~~~~~~l~~vl~i~~i~~~~~----d~~~~k~d~~~n~---~-~~~  143 (181)
                      .+|++|+.+++++.++++++....+.     ++ ....+.++++++++++...++    ++|..++.+.+.+   . +++
T Consensus        28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~  107 (673)
T PRK14010         28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKAR  107 (673)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            46789999999999999886532211     11 112233344445555555444    3444443333332   2 465


Q ss_pred             -EEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         144 -VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       144 -VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                       |.|||++++|+.++|+|||+|.+++||.||||++++++
T Consensus       108 ~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG  146 (673)
T PRK14010        108 RIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKG  146 (673)
T ss_pred             EEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEc
Confidence             67999999999999999999999999999999999974

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=99.36  E-value=5.4e-12  Score=118.25  Aligned_cols=104  Identities=19%  Similarity=0.270  Sum_probs=74.5

Q ss_pred             HHccchHHHHHHHHHHHHHhcccCC-------C--Ccchhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---c-cc
Q psy5837          78 EQFRRYSNIFFLFIALLQQIPDVSP-------T--GRYTTL--IPLILIMVVSGIKEIIEDIKRHLADGEINH---R-SV  142 (181)
Q Consensus        78 ~qf~~~~ni~lL~iail~~i~~i~~-------~--~~~~~~--~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~---~-~~  142 (181)
                      .||++++.+++++.++++++..+.+       .  +|+...  +.+++.+++.-..+.+++++..++.+.+++   . .+
T Consensus        28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a  107 (675)
T TIGR01497        28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA  107 (675)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence            5789999999999999988754321       1  133222  223333444545566666666665555443   2 47


Q ss_pred             eEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         143 DVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       143 ~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +|+| ||++++|+.+||+|||+|.+++||.||||++++++
T Consensus       108 ~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG  147 (675)
T TIGR01497       108 KLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEG  147 (675)
T ss_pred             EEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence            8885 89999999999999999999999999999999863

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>KOG0203|consensus

Probab=99.32  E-value=4.1e-13  Score=125.90  Aligned_cols=126  Identities=20%  Similarity=0.185  Sum_probs=99.0

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc---CC-----CCcchhhHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV---SP-----TGRYTTLIPLILIMVVSGIKEI  124 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i---~~-----~~~~~~~~~l~~vl~i~~i~~~  124 (181)
                      ..+.|+|.++++|.++-   |..+..|+...+.+.+++.++++++...   +.     .......+.|..+++++.+..+
T Consensus        68 L~rdG~NaL~Ppk~t~~---wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~  144 (1019)
T KOG0203|consen   68 LARDGPNALTPPKTTPE---WIKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSY  144 (1019)
T ss_pred             hccCCCCCCCCCCCChH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCC
Confidence            57799999999999873   2557899999999988898888886321   11     1112334556667778888888


Q ss_pred             HHHHHHHHhh---hhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         125 IEDIKRHLAD---GEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       125 ~~d~~~~k~d---~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +|+.+..+-.   +.+-.+.|+|+|||..+.+..+||||||+|.++-||+||||++++++
T Consensus       145 ~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~  204 (1019)
T KOG0203|consen  145 YQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISA  204 (1019)
T ss_pred             ccchhhHHHHHHHhccchhhheeeecceeEEechhhcccccceeeccCCcccceeEEEEe
Confidence            8887655533   34445789999999999999999999999999999999999999874

>KOG0208|consensus

Probab=99.26  E-value=5.2e-11  Score=113.36  Aligned_cols=120  Identities=22%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL  132 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k  132 (181)
                      +.-||+|.+.-+..+.+    ..|+++--.|+.++-.+..++ |..    .+.+.+...++++.+.+++.+.+|..+..+
T Consensus       170 ~~iyG~N~i~l~ik~i~----~iLv~EvL~PfYlFQ~fSv~l-W~~----d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~  240 (1140)
T KOG0208|consen  170 RIIYGRNVISLPIKSIS----QILVKEVLNPFYLFQAFSVAL-WLA----DSYYYYAFCIVIISVYSIVLSVYETRKQSI  240 (1140)
T ss_pred             HhhcCCceeeeecccHH----HHHHHhccchHHHHHhHHhhh-hhc----ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999988764    567777777775543333333 221    234455666666777888888888777666


Q ss_pred             hhhhhcc--ccceEEECCEEEEEecccCccCcEEEecC-CCEecCcEEEeeC
Q psy5837         133 ADGEINH--RSVDVIRNGMIYVEQWKDLKVGDIVKVYN-NSFFPGDLMVLST  181 (181)
Q Consensus       133 ~d~~~n~--~~~~VlR~g~~~~I~~~dLvvGDIV~L~~-Gd~vPAD~~LL~S  181 (181)
                      ..+.+-.  ..|+|+|+|.|++|.++|||||||+.+.. |-..|||++|+++
T Consensus       241 rlr~mv~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g  292 (1140)
T KOG0208|consen  241 RLRSMVKFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISG  292 (1140)
T ss_pred             HHHHHhcCCceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeC
Confidence            6666544  36899999999999999999999999999 9999999999864

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.23  E-value=5e-11  Score=109.21  Aligned_cols=76  Identities=26%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---hccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGE---INHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~---~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |.....+++++++....+.+++++..+..+.   ++..+++|+|||+++++++++|+|||+|.+++||.||||+++++.
T Consensus        18 ~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g   96 (536)
T TIGR01512        18 YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSG   96 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeC
Confidence            3333444445555555555555554444333   345789999999999999999999999999999999999999863

.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.17  E-value=1.3e-10  Score=106.88  Aligned_cols=76  Identities=20%  Similarity=0.152  Sum_probs=53.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccccceEEECC-EEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGEI---NHRSVDVIRNG-MIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~---n~~~~~VlR~g-~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      |.....+++++++....+.+++++..+..+.+   +...++|+|+| ++++++++||+|||+|.+++||.||||+++++.
T Consensus        18 ~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g   97 (556)
T TIGR01525        18 VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISG   97 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEec
Confidence            33444444444444444444444333332222   34679999995 999999999999999999999999999999863

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=99.12  E-value=1.7e-10  Score=104.54  Aligned_cols=55  Identities=40%  Similarity=0.448  Sum_probs=46.0

Q ss_pred             HHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         126 EDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       126 ~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++..+...++.++..+++|+|+| +++|++++|+|||+|.+++||.||||++++++
T Consensus        21 ~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g   75 (499)
T TIGR01494        21 EDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG   75 (499)
T ss_pred             HHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence            33333334444777899999999 99999999999999999999999999999974

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.04  E-value=1.5e-09  Score=103.15  Aligned_cols=66  Identities=23%  Similarity=0.268  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         116 MVVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       116 l~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +++..+.+++|++.++|+.+.+      ...+++|+|||++++++.++|+|||+|.+++||.||||+++++.
T Consensus       213 ~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g  284 (741)
T PRK11033        213 LLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSP  284 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEEC
Confidence            3344555677777777665543      34679999999999999999999999999999999999999863

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=98.88  E-value=2.1e-08  Score=92.64  Aligned_cols=64  Identities=22%  Similarity=0.222  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhh------ccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         118 VSGIKEIIEDIKRHLADGEI------NHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       118 i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +..+..++|++.++|+.+.+      ...+++++|+ |.+++|+.++|+|||+|.+++||.||||+++++.
T Consensus        63 ~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g  133 (562)
T TIGR01511        63 FILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEG  133 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEEC
Confidence            33444677777666655433      2357888885 7779999999999999999999999999999863

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.78  E-value=1.9e-08  Score=96.69  Aligned_cols=65  Identities=11%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhc------cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         116 MVVSGIKEIIEDIKRHLADGEIN------HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       116 l~i~~i~~~~~d~~~~k~d~~~n------~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      +++..+-.++|++.+.|+.+.++      ..+++|+|+|.+++|+.++|+|||+|.+++||.||||+++++
T Consensus       293 ~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~  363 (834)
T PRK10671        293 IGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQ  363 (834)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEE
Confidence            33444557788877777665443      367899999999999999999999999999999999999986

>KOG0209|consensus

Probab=98.69  E-value=5.8e-08  Score=91.80  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=81.5

Q ss_pred             ccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5837          54 CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLA  133 (181)
Q Consensus        54 ~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~  133 (181)
                      .+||+|+..-.-.+..    ..|.|.-..|+.++-.++..+.+.-    ..||.++..|+.++.+-+.. .   +||.+.
T Consensus       174 ~~~G~N~fdi~vPtF~----eLFkE~A~aPfFVFQVFcvgLWCLD----eyWYySlFtLfMli~fE~tl-V---~Qrm~~  241 (1160)
T KOG0209|consen  174 HKYGKNKFDIVVPTFS----ELFKEHAVAPFFVFQVFCVGLWCLD----EYWYYSLFTLFMLIAFEATL-V---KQRMRT  241 (1160)
T ss_pred             HHhcCCccccCCccHH----HHHHHhccCceeeHhHHhHHHHHhH----HHHHHHHHHHHHHHHHHHHH-H---HHHHHH
Confidence            4599999887766532    4566778888877666777666642    35777776666554443332 1   333343


Q ss_pred             hh---hhc--cccceEEECCEEEEEecccCccCcEEEecC---CCEecCcEEEee
Q psy5837         134 DG---EIN--HRSVDVIRNGMIYVEQWKDLKVGDIVKVYN---NSFFPGDLMVLS  180 (181)
Q Consensus       134 d~---~~n--~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~---Gd~vPAD~~LL~  180 (181)
                      ..   .+.  ...+.|+|+++|+.+..+||.|||+|.+..   ..-||||++||.
T Consensus       242 lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~  296 (1160)
T KOG0209|consen  242 LSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLR  296 (1160)
T ss_pred             HHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEe
Confidence            33   332  356899999999999999999999999988   567999999985

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.50  E-value=5.8e-07  Score=85.13  Aligned_cols=66  Identities=24%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhh------ccccceEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         115 IMVVSGIKEIIEDIKRHLADGEI------NHRSVDVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       115 vl~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      ++++-.+-+++|++.+.|+.+.+      ...++++++ ||+.++++.+||+|||+|.+++||+||+|+++++
T Consensus       180 ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~  252 (713)
T COG2217         180 LIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVS  252 (713)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEe
Confidence            44455566788888877765543      345787776 5668999999999999999999999999999986

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=98.02  E-value=5e-06  Score=54.99  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=37.3

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhc
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIP   98 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~   98 (181)
                      .+++||.|+++.++.+++   ++.+++||.++++++++++++++++.
T Consensus        19 r~~~~G~N~l~~~~~~s~---~~~~l~~~~~p~~~iL~~~a~is~~~   62 (64)
T smart00831       19 RLERYGPNELPPPKKRSP---LLRFLRQFHNPLIYILLAAAVLSALL   62 (64)
T ss_pred             HHHHhCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467899999999986654   36789999999999999999998864

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.97  E-value=6.8e-06  Score=55.37  Aligned_cols=41  Identities=22%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQ   95 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~   95 (181)
                      .+++||.|.++..+..++   ++.+++||.++++++++++++++
T Consensus        29 r~~~~G~N~l~~~~~~s~---~~~~~~~f~~~~~~lL~~aailS   69 (69)
T PF00690_consen   29 RRKKYGPNELPEPKKKSL---WRIFLKQFKNPFIILLLIAAILS   69 (69)
T ss_dssp             HHHHHSSSSTTTTTSSSH---HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHhcccccccccccCcH---HHHHHHHHHhHHHHHHHHHHHHC
Confidence            367899999988777765   37799999999999999999875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>KOG0207|consensus

Probab=97.75  E-value=0.00012  Score=70.29  Aligned_cols=62  Identities=21%  Similarity=0.249  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhhhh------hccccceEEECCE-EEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         119 SGIKEIIEDIKRHLADGE------INHRSVDVIRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       119 ~~i~~~~~d~~~~k~d~~------~n~~~~~VlR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      .++..++|...++|+...      +...++.++.+|+ .++|+...|.+||+|++.+|++||+|+++++
T Consensus       351 i~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~  419 (951)
T KOG0207|consen  351 ITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVD  419 (951)
T ss_pred             HHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEe
Confidence            334466777667765443      3357899999996 8999999999999999999999999999985

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=97.74  E-value=2.5e-05  Score=71.26  Aligned_cols=69  Identities=25%  Similarity=0.364  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhh--hh-ccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         112 LILIMVVSGIKEIIEDIK-RHLADG--EI-NHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       112 l~~vl~i~~i~~~~~d~~-~~k~d~--~~-n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      |.+.+++.-+-+++-|-+ +.++|.  +. ....++++++ |.++.+++.+|+.||+|.+++||.+|+|+-+++
T Consensus        72 L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIe  145 (681)
T COG2216          72 LWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIE  145 (681)
T ss_pred             HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEe
Confidence            334444444444444422 334432  22 2345677776 899999999999999999999999999999886

>KOG4383|consensus

Probab=92.45  E-value=0.41  Score=45.93  Aligned_cols=72  Identities=18%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHh---------hhh---------hcc----------cc-----c-eEEECCEEE
Q psy5837         106 YTTLIPLILIMVVSGIKEIIEDIKRHLA---------DGE---------INH----------RS-----V-DVIRNGMIY  151 (181)
Q Consensus       106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~---------d~~---------~n~----------~~-----~-~VlR~g~~~  151 (181)
                      +...-.+.+.++.+.+.+.+||.-++++         |..         +..          ..     | ..+|||..+
T Consensus        88 l~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGhlm  167 (1354)
T KOG4383|consen   88 LSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGHLM  167 (1354)
T ss_pred             echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCeee
Confidence            3445566667777888888888554432         111         100          00     1 234999999


Q ss_pred             EEecccCccCcEEEecCCCEecCcEE
Q psy5837         152 VEQWKDLKVGDIVKVYNNSFFPGDLM  177 (181)
Q Consensus       152 ~I~~~dLvvGDIV~L~~Gd~vPAD~~  177 (181)
                      +++..=||.||||-+++|+.-||.+.
T Consensus       168 ~lP~~LLVeGDiIa~RPGQeafan~~  193 (1354)
T KOG4383|consen  168 ELPRILLVEGDIIAFRPGQEAFANCE  193 (1354)
T ss_pred             ecceeEEEeccEEEecCCcccccccc
Confidence            99999999999999999999999764

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=81.54  E-value=3.8  Score=40.55  Aligned_cols=64  Identities=17%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH---HHHHh--h---hhhccccce-E----EECCEEEEEecccCccCcEEEecC
Q psy5837         105 RYTTLIPLILIMVVSGIKEIIEDI---KRHLA--D---GEINHRSVD-V----IRNGMIYVEQWKDLKVGDIVKVYN  168 (181)
Q Consensus       105 ~~~~~~~l~~vl~i~~i~~~~~d~---~~~k~--d---~~~n~~~~~-V----lR~g~~~~I~~~dLvvGDIV~L~~  168 (181)
                      ....+++++++++++++.++.++.   +-.+.  .   +.+.+.+.. |    +.-|....+...|.+|.|.+.++.
T Consensus       131 ~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g  207 (941)
T TIGR01517       131 GVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISG  207 (941)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEc
Confidence            344566666777788888777764   22221  1   112222222 1    235777888888888888888764

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0210|consensus

Probab=80.57  E-value=10  Score=36.88  Aligned_cols=107  Identities=9%  Similarity=0.085  Sum_probs=77.0

Q ss_pred             CcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----
Q psy5837          64 AKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEIN-----  138 (181)
Q Consensus        64 ~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n-----  138 (181)
                      ..|+.+.+++...|.+|.+.++++..+..++..+..-.....+..+++++.+.++.-..+-++.++|.+..+..+     
T Consensus        90 n~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse~y~~lt  169 (1051)
T KOG0210|consen   90 NIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSEKYTKLT  169 (1051)
T ss_pred             ceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeec
Confidence            356777777778899999999999998888877754444445556667777777877778899999888654322     


Q ss_pred             cc-----cceEEECCEEEEEecccCccCcEEEecCCC
Q psy5837         139 HR-----SVDVIRNGMIYVEQWKDLKVGDIVKVYNNS  170 (181)
Q Consensus       139 ~~-----~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd  170 (181)
                      ..     +..-+.-|....+.-.+=+|.|.|.|+.-|
T Consensus       170 r~~~~~~~Ss~i~vGDvi~v~K~~RVPADmilLrTsd  206 (1051)
T KOG0210|consen  170 RDGTRREPSSDIKVGDVIIVHKDERVPADMILLRTSD  206 (1051)
T ss_pred             cCCcccccccccccccEEEEecCCcCCcceEEEEccC
Confidence            11     122234577777888888999999998755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.86
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.83
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.82
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.82
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.73
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	99.3
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	99.25
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.24
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.1
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	99.06
2jmz_A	186	Hypothetical protein MJ0781; unknown function; NMR	85.79
2lcj_A	185	PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi	81.55

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.86  E-value=8.9e-22  Score=189.83  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc---C-----CCCcchhhHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV---S-----PTGRYTTLIPLILIMVVSGIKEI  124 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i---~-----~~~~~~~~~~l~~vl~i~~i~~~  124 (181)
                      +++||+|+++..+.+++   ++.|++||.++++++++++++++++...   .     ..+.+...++++++++++++.++
T Consensus        82 l~~~G~N~l~~~~~~~~---~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~  158 (1034)
T 3ixz_A           82 LLRDGPNALRPPRGTPE---YVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGY  158 (1034)
T ss_pred             HHhhCCCCCCCCCCCCH---HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHH
Confidence            57899999999887764   3678999999999999998888876421   0     11234556777888899999999


Q ss_pred             HHHHHHHHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         125 IEDIKRHLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       125 ~~d~~~~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +||++++++.++++   ..+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus       159 ~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~  218 (1034)
T 3ixz_A          159 YQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQA  218 (1034)
T ss_pred             HHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEe
Confidence            99999998876655   4689999999999999999999999999999999999999974

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.83  E-value=1.2e-20  Score=180.22  Aligned_cols=120  Identities=13%  Similarity=0.166  Sum_probs=102.1

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL  132 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k  132 (181)
                      +++||.|+++++++++|    ..|++||.++++++++++++++++.     +.|.....++++++++++.+++|+++..+
T Consensus        97 ~~~~G~N~l~~~~~~~~----~~~l~~f~~~~~~ll~~aai~s~~~-----g~~~~~~~i~~vv~i~~~i~~~qe~~a~~  167 (920)
T 1mhs_A           97 RRKYGLNQMKEEKENHF----LKFLGFFVGPIQFVMEGAAVLAAGL-----EDWVDFGVICGLLLLNAVVGFVQEFQAGS  167 (920)
T ss_dssp             HHHTSSSSCCCCCCSSH----HHHTHHHHHHHHHHHHHHHHHCTTC-----SCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999998887754    4678999999999888888888774     23444556667778899999999999988


Q ss_pred             hhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         133 ADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       133 ~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +.++++   ..+++|+|||++++|+++||||||||.|++||+||||++|+++
T Consensus       168 a~~~L~~l~~~~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g  219 (920)
T 1mhs_A          168 IVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTD  219 (920)
T ss_dssp             HHHTTTTCCCSSCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEE
T ss_pred             HHHHhhccCCCEEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEec
Confidence            877665   4689999999999999999999999999999999999999963

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.82  E-value=1.8e-20  Score=180.04  Aligned_cols=125  Identities=19%  Similarity=0.229  Sum_probs=100.8

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCC-----cchhhHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTG-----RYTTLIPLILIMVVSGIKEIIE  126 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~-----~~~~~~~l~~vl~i~~i~~~~~  126 (181)
                      .+++||.|+++++|++++   ++.|++||+++++++|++++++++++++...+     .+...+.++++++++++.++++
T Consensus        33 r~~~~G~N~l~~~~~~~~---~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~q  109 (995)
T 3ar4_A           33 HLEKYGHNELPAEEGKSL---WELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQ  109 (995)
T ss_dssp             HHHHHCCSSCCCCCCCCH---HHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCccCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHH
Confidence            367899999999877654   37899999999999999999999987654321     2333455556677888889998


Q ss_pred             HHHHHHhh---hhhccccceEEECCE--EEEEecccCccCcEEEecCCCEecCcEEEe
Q psy5837         127 DIKRHLAD---GEINHRSVDVIRNGM--IYVEQWKDLKVGDIVKVYNNSFFPGDLMVL  179 (181)
Q Consensus       127 d~~~~k~d---~~~n~~~~~VlR~g~--~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL  179 (181)
                      |++..++.   ++++..+++|+|||.  .++|+++||||||||.|++||+||||++|+
T Consensus       110 e~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll  167 (995)
T 3ar4_A          110 ERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRIL  167 (995)
T ss_dssp             HHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEE
T ss_pred             HHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEE
Confidence            88755543   345567899999887  699999999999999999999999999995

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.82  E-value=6.9e-21  Score=183.60  Aligned_cols=126  Identities=17%  Similarity=0.111  Sum_probs=103.4

Q ss_pred             cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc-C---C----CCcchhhHHHHHHHHHHHHHHH
Q psy5837          53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV-S---P----TGRYTTLIPLILIMVVSGIKEI  124 (181)
Q Consensus        53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i-~---~----~~~~~~~~~l~~vl~i~~i~~~  124 (181)
                      +++||+|+++.++..++   ++.|++||.++++++|+++++++++... .   .    .+.+...++++++++++++.++
T Consensus        77 ~~~~G~N~l~~~~~~~~---~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~  153 (1028)
T 2zxe_A           77 LARDGPNSLTPPPTTPE---WIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSY  153 (1028)
T ss_dssp             HHHHCCSCCCCCCCCCH---HHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            57899999999876554   3678999999999999999999876521 0   0    0123456677788899999999


Q ss_pred             HHHHHHHHhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         125 IEDIKRHLADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       125 ~~d~~~~k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +||++..++.+++   ...+|+|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus       154 ~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g  213 (1028)
T 2zxe_A          154 YQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISA  213 (1028)
T ss_dssp             HHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEee
Confidence            9998776665544   45789999999999999999999999999999999999999974

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.73  E-value=2.8e-20  Score=177.06  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=100.9

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCC--CCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSP--TGRYTTLIPLILIMVVSGIKEIIEDIK  129 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~--~~~~~~~~~l~~vl~i~~i~~~~~d~~  129 (181)
                      .+++||.|+++.+++++|    +.|++||.++++++|+++++++++.+...  ...|...+.++++++++++.+++|+++
T Consensus        41 r~~~~G~N~l~~~~~~~~----~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~k  116 (885)
T 3b8c_A           41 RIQIFGPNKLEEKKESKL----LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENN  116 (885)
T ss_dssp             HSSSCCSCCTTTTCCCTT----SSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTT
T ss_pred             HHHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999887665    34678999999999999999988764211  113344456666677888889999887


Q ss_pred             HHHhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         130 RHLADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       130 ~~k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ..++.+++   ...+++|+|||++++|+++||||||||.|++||+||||++|+++
T Consensus       117 a~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g  171 (885)
T 3b8c_A          117 AGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEG  171 (885)
T ss_dssp             TTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCS
T ss_pred             HHHHHHHHhccCCCeEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEc
Confidence            76665543   45789999999999999999999999999999999999999874

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F

Probab=99.30  E-value=4.2e-12  Score=93.21  Aligned_cols=49  Identities=27%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             hhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         133 ADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       133 ~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +...+....++|+|+|+++++++++|+|||+|.+++||.||||++++++
T Consensus         5 ~L~~l~p~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g   53 (113)
T 2hc8_A            5 KLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG   53 (113)
T ss_dssp             HHHHHSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred             HHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence            3445667889999999999999999999999999999999999999874

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.25  E-value=1.5e-11  Score=113.50  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         117 VVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       117 ~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ++..+..++|++.++|+++.+      ...+++|+|||++++|+++||+|||+|.+++||.||||+++++.
T Consensus       104 ~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G  174 (645)
T 3j08_A          104 AFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG  174 (645)
T ss_dssp             HHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC
Confidence            344566788888887765433      34689999999999999999999999999999999999999863

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.24  E-value=2.4e-11  Score=113.38  Aligned_cols=66  Identities=23%  Similarity=0.270  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         116 MVVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       116 l~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      +++..+..++|++.++|+++.+      ...+++|+|||++++|+++||+|||+|.+++||.||||+++++.
T Consensus       181 ~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G  252 (723)
T 3j09_A          181 LAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG  252 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC
Confidence            3444566788888888765543      34679999999999999999999999999999999999999863

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=99.10  E-value=4.4e-11  Score=112.06  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc------cccceEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         114 LIMVVSGIKEIIEDIKRHLADGEIN------HRSVDVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       114 ~vl~i~~i~~~~~d~~~~k~d~~~n------~~~~~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      +++++..+..++|.+.++|+.+.++      ..+++|+| ||++++|+++||+|||+|.+++||.||||+++++
T Consensus       193 ~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~  266 (736)
T 3rfu_A          193 VITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQE  266 (736)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEE
Confidence            3344555667778888777655443      46788888 9999999999999999999999999999999986

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=86.19  Aligned_cols=47  Identities=19%  Similarity=0.172  Sum_probs=41.1

Q ss_pred             hhhccccceEEECCE------EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837         135 GEINHRSVDVIRNGM------IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST  181 (181)
Q Consensus       135 ~~~n~~~~~VlR~g~------~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S  181 (181)
                      ..+....++|+|+|.      +++|+.++|+|||+|.|++||.||||++|++.
T Consensus        13 ~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g   65 (124)
T 2kij_A           13 ISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG   65 (124)
T ss_dssp             HHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSC
T ss_pred             hccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEc
Confidence            345567899999764      78999999999999999999999999999863

>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A

Probab=85.79  E-value=0.83  Score=35.07  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             ccceEEECCEEEEEecccCccCcEEEecCCCEecCc
Q psy5837         140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGD  175 (181)
Q Consensus       140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD  175 (181)
                      ....+.++|+...++++||.+||.|.+..|..++.|
T Consensus       103 Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~  138 (186)
T 2jmz_A          103 HPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD  138 (186)
T ss_dssp             CEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred             CEEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence            457777899999999999999999999887666654

>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}

Probab=81.55  E-value=1.9  Score=32.94  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             cccceEEECCEEEEEecccCccCcEEEecCCCEe
Q psy5837         139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFF  172 (181)
Q Consensus       139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~v  172 (181)
                      +....+.++|+...+++.+|.+||.|.+..++.-
T Consensus        92 ~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~  125 (185)
T 2lcj_A           92 DHPVLVYENGRFIEKRAFEVKEGDKVLVSELELV  125 (185)
T ss_dssp             SSEEEEEETTEEEEEEGGGCCTTCEEEECCCCCS
T ss_pred             CCEEEEecCCeEEEEEHHHCCCCCEEEEcccccc
Confidence            3456777899999999999999999999875543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1wpga1	115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.21
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.82
d1vioa2	58	Pseudouridine synthase RsuA N-terminal domain {Hae	87.19
d1dm9a_	104	Heat shock protein 15 kD {Escherichia coli [TaxId:	85.62

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.21  E-value=2.9e-12  Score=92.71  Aligned_cols=40  Identities=30%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             cceEEECCEE--EEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837         141 SVDVIRNGMI--YVEQWKDLKVGDIVKVYNNSFFPGDLMVLS  180 (181)
Q Consensus       141 ~~~VlR~g~~--~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~  180 (181)
                      .++|+|+|++  ++|+++||||||||+|++||.||||++||.
T Consensus         2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~   43 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILS   43 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEE
T ss_pred             ceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEE
Confidence            5789999975  789999999999999999999999999974

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.82  E-value=6e-10  Score=96.89  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCC-----cchhhHHHHHHHHHHHHHHHHH
Q psy5837          52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTG-----RYTTLIPLILIMVVSGIKEIIE  126 (181)
Q Consensus        52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~-----~~~~~~~l~~vl~i~~i~~~~~  126 (181)
                      .+++||.|+++.++.++++   +.+++||+++++++++++++++++.+....+     .+...+.+++++++++..+++|
T Consensus        32 r~~~~G~N~l~~~~~~s~~---~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~I~~vv~~n~~i~~~q  108 (472)
T d1wpga4          32 HLEKYGHNELPAEEGKSLW---ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQ  108 (472)
T ss_dssp             HHHHSCCSSCCCCCCCCHH---HHHHHHTCSHHHHHHHHHHHHHHHHHHTSCTTSTTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCCCCCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccchhHhHhhhhhheeeeeeeEEeEE
Confidence            4678999999999887653   6789999999999999999999886532211     2344556667778899999999


Q ss_pred             HHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEe
Q psy5837         127 DIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVL  179 (181)
Q Consensus       127 d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL  179 (181)
                      |++..++...+++....                      ...||.+|||.++.
T Consensus       109 e~~a~~~~~~l~~~~~~----------------------~~~~~~~P~d~~l~  139 (472)
T d1wpga4         109 ERNAENAIEALKEYEPA----------------------ATEQDKTPLQQKLD  139 (472)
T ss_dssp             HHSCCCHHHHHGGGSCC----------------------CCCCCCCHHHHHHH
T ss_pred             echHHHHHHHHhhhccc----------------------cccccCchHHHHHH
Confidence            98766665544432110                      14688999997653

>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.19  E-value=0.13  Score=30.91  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             HHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEec
Q psy5837         129 KRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFP  173 (181)
Q Consensus       129 ~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vP  173 (181)
                      .|.++.+.+.+..++|  ||+....+..++.+||.|.+. |+.+|
T Consensus        15 SR~~a~~lI~~g~V~V--ng~~v~~~~~~v~~~d~I~~~-g~~l~   56 (58)
T d1vioa2          15 TRSQATKAIRQSAVKI--NGEIVKSGSVQISQEDEIYFE-DELLT   56 (58)
T ss_dssp             CHHHHHHHHHTTCEEE--TTEECCCTTCEECTTSCEEET-TEECC
T ss_pred             CHHHHHHHHHcCeEEE--CCEEeCCCCCCCCCCCEEEEC-CEEcc
Confidence            4556667777766665  899999999999999999995 77765

>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Heat shock protein 15 kD
domain: Heat shock protein 15 kD
species: Escherichia coli [TaxId: 562]

Probab=85.62  E-value=0.29  Score=32.95  Aligned_cols=39  Identities=21%  Similarity=0.159  Sum_probs=29.9

Q ss_pred             HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCE
Q psy5837         130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSF  171 (181)
Q Consensus       130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~  171 (181)
                      |..+.+.+++..+.|  ||+.. .++..+.+||+|.+..|..
T Consensus        20 R~~A~~~i~~G~V~v--Ng~~v-Kps~~vk~GDvI~i~~~~~   58 (104)
T d1dm9a_          20 RALAREMIEGGKVHY--NGQRS-KPSKIVELNATLTLRQGND   58 (104)
T ss_dssp             HHHHHHHHHTTCEEE--TTEEC-CTTCBCCTTCEEEEEETTE
T ss_pred             HHHHHHHHHcCCeee--CCeec-cccccCCCCCEEEEEeCCe
Confidence            445666677777765  89875 4899999999999988764