Psyllid ID: psy5840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEILSKNLSQKFQVSSLLLSFKVGIECLL
Secondary Structure (PSIPRED)
cccEEEEEcccccccccEEEEEEEccccccEEEEEEEEcccccccEEccccccccccEEEEEEEccccEEEEccEEEEcccccccccccccccccccccccccccccccccccHHHHHEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccEEEEEEEEcccccccEEEEEEEEcccccccEccccccccccEEEEEEEccccEEEEccEEEEcccccccccccccccccccccccccHHHccHcHHHccEHHHHHHHcEEcHHHcc
Coil and Loop (DISEMBL)
MFLFQAVIGANAKEGEVHVVEVEAmgfradikLPIVVLKaagvnnhapldllfpdppvtfklvkgsgpiylfgnhsvgtgepmgedddeesidedfseeevdesEILSKNLSQKFQVSSLLLSFKVGIECLL
Flexible Loop (DISEMBL)
MFLFQAViganakegevHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEIlsknlsqkfqvsslllsfkvgiecll
Low Complexity Region (SEG)
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEPMGedddeesidedfseeevdeseILSKNLSQKFQVSSLLLSFKVGIECLL
Disordered region (IsUnstruct)
*FLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNH***************************************FQVSSLLLSFKVGIEC**
Disordered Region (DISOPRED)
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHS******************************************SLLLSFKVGIECLL
Disordered Region (DISEMBL)
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEP***********************ILSKNLSQKFQVSSLLLSFKVGIECLL
Disordered Region (DISPRO)
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTG*************************ILSKNLSQKFQVSSLLLSFKVGIECLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEILSKNLSQKFQVSSLLLSFKVGIECLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9NLA3	346	Nucleoplasmin-like protei	N/A	N/A	0.568	0.216	0.525	1e-13
P91753	411	Mitotic apparatus protein	N/A	N/A	0.568	0.182	0.448	3e-10
Q27415	152	Nucleoplasmin-like protei	yes	N/A	0.545	0.473	0.426	4e-08
P07222	299	Nucleophosmin OS=Xenopus	N/A	N/A	0.666	0.294	0.351	7e-05
Q3T160	294	Nucleophosmin OS=Bos taur	yes	N/A	0.575	0.258	0.379	0.0002
P06748	294	Nucleophosmin OS=Homo sap	no	N/A	0.575	0.258	0.367	0.0003
P13084	292	Nucleophosmin OS=Rattus n	no	N/A	0.575	0.260	0.367	0.0003
Q61937	292	Nucleophosmin OS=Mus musc	yes	N/A	0.575	0.260	0.367	0.0003

>sp|Q9NLA3|ANO39_ASTPE Nucleoplasmin-like protein ANO39 OS=Asterina pectinifera PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           +FL QAV+GANAKEGE +VVE+E   F  D +K P+  LK  G+N  +PLD+    PPVT
Sbjct: 42  LFLKQAVLGANAKEGERNVVEIETENFDGDNVKQPLFSLK-LGLNESSPLDIGI-QPPVT 99

Query: 60  FKLVKGSGPIYLFGNHSV 77
           F L  GSGP++L G H +
Sbjct: 100 FILTAGSGPVFLSGQHMI 117

Binds double-stranded RNA and both single-stranded and double-stranded DNA.
Asterina pectinifera (taxid: 7594)

>sp|P91753|MP62_LYTPI Mitotic apparatus protein p62 OS=Lytechinus pictus PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 3/78 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKL-PIVVLKAAGVNNHAPLDLLFPDPPVT 59
           +FL QAV+G NAK+ + +V+EVE + F  +  + P++ L+  G+N    LD+    PPVT
Sbjct: 42  LFLKQAVLGVNAKDDDRNVIEVETINFDGETVIQPLLSLR-LGLNESTNLDIGL-QPPVT 99

Query: 60  FKLVKGSGPIYLFGNHSV 77
           FKL  GSGP+YL G H++
Sbjct: 100 FKLALGSGPVYLSGQHAL 117

Required for mitotic progression. Binds to chromatin.

Lytechinus pictus (taxid: 7653)

>sp|Q27415|NLP_DROME Nucleoplasmin-like protein OS=Drosophila melanogaster GN=Nlp PE=1 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + Q ++GA AKE E +VVEV     +  +++PI VLKA       P D+ F +  VTF
Sbjct: 32  LVIKQILLGAEAKENEFNVVEVNTP--KDSVQIPIAVLKAGETRAVNP-DVEFYESKVTF 88

Query: 61  KLVKGSGPIYLFGNH 75
           KL+KGSGP+Y+ G++
Sbjct: 89  KLIKGSGPVYIHGHN 103

Isoform 2 is inactive for chromatin assembly. In vitro it appears to form a high molecular mass aggregate with the core histones.

Drosophila melanogaster (taxid: 7227)

>sp|P07222|NPM_XENLA Nucleophosmin OS=Xenopus laevis GN=npm1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA+AK+ E+HVVE E + +    IK+ +  LK + V     L      PPV 
Sbjct: 44  LSLRTVSLGASAKD-ELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEITPPVI 101

Query: 60  FKLVKGSGPIYLFGNHSVGTGEPMGEDDDEE 90
            +L  GSGP+Y+ G H V   +    DD++E
Sbjct: 102 LRLKSGSGPVYVSGQHLVALEDLESSDDEDE 132

Associated with nucleolar ribonucleoprotein structures and bind single-stranded nucleic acids. It may function in the assembly and/or transport of ribosome. May stimulate endonuclease activity on apurinic/apyrimidinic (AP) double-stranded DNA. May inhibit endonuclease activity on AP single-stranded RNA.

Xenopus laevis (taxid: 8355)

>sp|Q3T160|NPM_BOVIN Nucleophosmin OS=Bos taurus GN=NPM1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA AK+ E+HVVE EAM +    IK+ +  LK + V     L      PPV 
Sbjct: 42  LSLRTVSLGAGAKD-ELHVVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99

Query: 60  FKLVKGSGPIYLFGNHSVG 78
            +L  GSGP+++ G H V 
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118

Involved in diverse cellular processes such as ribosome biogenesis, centrosome duplication, protein chaperoning, histone assembly, cell proliferation, and regulation of tumor suppressors p53/TP53 and ARF. Binds ribosome presumably to drive ribosome nuclear export. Associated with nucleolar ribonucleoprotein structures and bind single-stranded nucleic acids. Acts as a chaperonin for the core histones H3, H2B and H4. Stimulates APEX1 endonuclease activity on apurinic/apyrimidinic (AP) double-stranded DNA but inhibits APEX1 endonuclease activity on AP single-stranded RNA. May exert a control of APEX1 endonuclease activity within nucleoli devoted to repair AP on rDNA and the removal of oxidized rRNA molecules. In concert with BRCA2, regulates centrosome duplication. Regulates centriole duplication: phosphorylation by PLK2 is able to trigger centriole replication.

Bos taurus (taxid: 9913)

>sp|P06748|NPM_HUMAN Nucleophosmin OS=Homo sapiens GN=NPM1 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV 
Sbjct: 42  LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99

Query: 60  FKLVKGSGPIYLFGNHSVG 78
            +L  GSGP+++ G H V 
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118

Involved in diverse cellular processes such as ribosome biogenesis, centrosome duplication, protein chaperoning, histone assembly, cell proliferation, and regulation of tumor suppressors p53/TP53 and ARF. Binds ribosome presumably to drive ribosome nuclear export. Associated with nucleolar ribonucleoprotein structures and bind single-stranded nucleic acids. Acts as a chaperonin for the core histones H3, H2B and H4. Stimulates APEX1 endonuclease activity on apurinic/apyrimidinic (AP) double-stranded DNA but inhibits APEX1 endonuclease activity on AP single-stranded RNA. May exert a control of APEX1 endonuclease activity within nucleoli devoted to repair AP on rDNA and the removal of oxidized rRNA molecules. In concert with BRCA2, regulates centrosome duplication. Regulates centriole duplication: phosphorylation by PLK2 is able to trigger centriole replication.

Homo sapiens (taxid: 9606)

>sp|P13084|NPM_RAT Nucleophosmin OS=Rattus norvegicus GN=Npm1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV 
Sbjct: 42  LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99

Query: 60  FKLVKGSGPIYLFGNHSVG 78
            +L  GSGP+++ G H V 
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118

Involved in diverse cellular processes such as ribosome biogenesis, centrosome duplication, protein chaperoning, histone assembly, cell proliferation, and regulation of tumor suppressors p53/TP53 and ARF. Binds ribosome presumably to drive ribosome nuclear export. Acts as a chaperonin for the core histones H3, H2B and H4. Stimulates APEX1 endonuclease activity on apurinic/apyrimidinic (AP) double-stranded DNA but inhibits APEX1 endonuclease activity on AP single-stranded RNA. May exert a control of APEX1 endonuclease activity within nucleoli devoted to repair AP on rDNA and the removal of oxidized rRNA molecules (By similarity). Associated with nucleolar ribonucleoprotein structures and bind single-stranded nucleic acids. In concert with BRCA2, regulates centrosome duplication. Regulates centriole duplication: phosphorylation by PLK2 is able to trigger centriole replication.

Rattus norvegicus (taxid: 10116)

>sp|Q61937|NPM_MOUSE Nucleophosmin OS=Mus musculus GN=Npm1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV 
Sbjct: 42  LSLRTVSLGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVV 99

Query: 60  FKLVKGSGPIYLFGNHSVG 78
            +L  GSGP+++ G H V 
Sbjct: 100 LRLKCGSGPVHISGQHLVA 118

Involved in diverse cellular processes such as ribosome biogenesis, centrosome duplication, protein chaperoning, histone assembly, cell proliferation, and regulation of tumor suppressors p53/TP53 and ARF. Binds ribosome presumably to drive ribosome nuclear export. Acts as a chaperonin for the core histones H3, H2B and H4. Stimulates APEX1 endonuclease activity on apurinic/apyrimidinic (AP) double-stranded DNA but inhibits APEX1 endonuclease activity on AP single-stranded RNA. May exert a control of APEX1 endonuclease activity within nucleoli devoted to repair AP on rDNA and the removal of oxidized rRNA molecules (By similarity). Associated with nucleolar ribonucleoprotein structures and bind single-stranded nucleic acids. In concert with BRCA2, regulates centrosome duplication. Regulates centriole duplication: phosphorylation by PLK2 is able to trigger centriole replication.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
121543851	176	nucleoplasmin isoform 1-like protein [Ma	0.628	0.471	0.630	4e-24
240849517	179	nucleoplasmin [Acyrthosiphon pisum] gi|2	0.628	0.463	0.626	2e-22
91089935	173	PREDICTED: similar to nucleoplasmin [Tri	0.598	0.456	0.531	3e-18
332377009	157	unknown [Dendroctonus ponderosae]	0.590	0.496	0.525	9e-18
124365241	161	nucleoplasmin-like protein [Bombyx mori]	0.590	0.484	0.481	1e-13
290555898	171	nucleoplasmin isoform 1 [Bombyx mori] gi	0.590	0.456	0.481	1e-13
114052609	187	nucleoplasmin isoform 2 [Bombyx mori] gi	0.590	0.417	0.481	2e-13
389611225	171	conserved hypothetical protein [Papilio	0.583	0.450	0.474	2e-13
389608697	187	conserved hypothetical protein [Papilio	0.583	0.411	0.474	3e-13
340708672	605	PREDICTED: hypothetical protein LOC10064	0.553	0.120	0.527	9e-13

>gi|121543851|gb|ABM55590.1| nucleoplasmin isoform 1-like protein [Maconellicoccus hirsutus]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QAV+G  AK+GE++VVEVEAMG+++D+K PI VLK  G  + + LDLLFPDPPVTF
Sbjct: 41  LLVKQAVLGPEAKDGEINVVEVEAMGYKSDVKYPITVLKG-GSQHQSLLDLLFPDPPVTF 99

Query: 61  KLVKGSGPIYLFGNHSVGTGEPMG 84
           KL+KGSGPI+L GNHSVG+G+ +G
Sbjct: 100 KLIKGSGPIHLLGNHSVGSGDGLG 123

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849517|ref|NP_001155419.1| nucleoplasmin [Acyrthosiphon pisum] gi|239799430|dbj|BAH70635.1| ACYPI001342 [Acyrthosiphon pisum]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 66/83 (79%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QAV+G    + EV+V+EVEAMG+++DIK P+VVLK    ++   LDLLFPDPPVTF
Sbjct: 41  LLVKQAVLGPEVPDDEVNVIEVEAMGYKSDIKFPVVVLKGGTGHSQCVLDLLFPDPPVTF 100

Query: 61  KLVKGSGPIYLFGNHSVGTGEPM 83
           KLVKG+GPI+L GNHSVGTGE M
Sbjct: 101 KLVKGNGPIHLLGNHSVGTGEGM 123

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089935|ref|XP_973085.1| PREDICTED: similar to nucleoplasmin [Tribolium castaneum] gi|270013558|gb|EFA10006.1| hypothetical protein TcasGA2_TC012176 [Tribolium castaneum]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 61/79 (77%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +A EGEV+VV+VEAM ++  +K+PI  LKA G NN   LDL FPDPPVTF
Sbjct: 36  LIIKQALVGPDATEGEVNVVQVEAMTWKDSVKIPIASLKAGGANNQVLLDLSFPDPPVTF 95

Query: 61  KLVKGSGPIYLFGNHSVGT 79
            LV+G+GP+++ G+H +G+
Sbjct: 96  SLVQGNGPVHIIGHHLIGS 114

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332377009|gb|AEE63644.1| unknown [Dendroctonus ponderosae]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 59/78 (75%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G  A EGEV+V++VEAM ++  +K+PI  LKA G NN   LDL FPDPPVTF
Sbjct: 38  LIIKQALLGPGATEGEVNVIQVEAMTWKDSVKIPIATLKAGGANNQVLLDLSFPDPPVTF 97

Query: 61  KLVKGSGPIYLFGNHSVG 78
            L++GSGP+++ G+H +G
Sbjct: 98  TLIQGSGPVHIVGHHLIG 115

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124365241|gb|ABN09649.1| nucleoplasmin-like protein [Bombyx mori]

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +AK  E++V++VEAM  +  +KLP+ VLK  G + H  LD+ FPD PVTF
Sbjct: 34  LVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKV-GESRHVRLDIEFPDAPVTF 92

Query: 61  KLVKGSGPIYLFGNHSVGT 79
            LV+GSGP++L G+H +G 
Sbjct: 93  TLVQGSGPVHLIGHHLLGA 111

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290555898|ref|NP_001166837.1| nucleoplasmin isoform 1 [Bombyx mori] gi|87248549|gb|ABD36327.1| nucleoplasmin isoform 1 [Bombyx mori]

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +AK  E++V++VEAM  +  +KLP+ VLK  G + H  LD+ FPD PVTF
Sbjct: 34  LVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKV-GESRHVRLDIEFPDAPVTF 92

Query: 61  KLVKGSGPIYLFGNHSVGT 79
            LV+GSGP++L G+H +G 
Sbjct: 93  TLVQGSGPVHLIGHHLLGA 111

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052609|ref|NP_001040261.1| nucleoplasmin isoform 2 [Bombyx mori] gi|87248551|gb|ABD36328.1| nucleoplasmin isoform 2 [Bombyx mori]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +AK  E++V++VEAM  +  +KLP+ VLK  G + H  LD+ FPD PVTF
Sbjct: 34  LVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAVLKV-GESRHVRLDIEFPDAPVTF 92

Query: 61  KLVKGSGPIYLFGNHSVGT 79
            LV+GSGP++L G+H +G 
Sbjct: 93  TLVQGSGPVHLIGHHLLGA 111

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611225|dbj|BAM19224.1| conserved hypothetical protein [Papilio polytes]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +AK  E++VV+VE M  +  IK+P+ +LK  G   HA LD+ FPD PVTF
Sbjct: 34  LLIRQALLGPDAKPDELNVVQVETMCLQDSIKIPVAILKV-GETRHARLDIEFPDAPVTF 92

Query: 61  KLVKGSGPIYLFGNHSVG 78
            L +GSGP++L G H +G
Sbjct: 93  TLTQGSGPVHLIGQHLLG 110

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608697|dbj|BAM17958.1| conserved hypothetical protein [Papilio xuthus]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + QA++G +AK  E++VV+VE M  +  IK+P+ +LK  G   HA LD+ FPD PVTF
Sbjct: 34  LLIRQALLGPDAKPDELNVVQVETMCLQDSIKIPVAILKV-GETRHARLDIEFPDAPVTF 92

Query: 61  KLVKGSGPIYLFGNHSVG 78
            L +GSGP++L G H +G
Sbjct: 93  TLTQGSGPVHLIGQHLLG 110

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708672|ref|XP_003392946.1| PREDICTED: hypothetical protein LOC100643148 [Bombus terrestris]

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 6   AVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKG 65
           A++G  AK GE++V++VEAMG +  IK PI +L+  G      LDL FPDPPVTF LVKG
Sbjct: 474 ALLGPEAKPGELNVLQVEAMGLKGPIKTPIALLE-MGKTAQIILDLSFPDPPVTFTLVKG 532

Query: 66  SGPIYLFGNHSVGT 79
           SGP+++ G++ +GT
Sbjct: 533 SGPVHIVGHNLLGT 546

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|Q9NLA3	346	Q9NLA3 "Nucleoplasmin-like pro	0.568	0.216	0.525	1.8e-14
FB|FBgn0016685	152	Nlp "Nucleoplasmin" [Drosophil	0.522	0.453	0.452	3.2e-10
FB|FBgn0039735	156	CG7911 [Drosophila melanogaste	0.606	0.512	0.376	3.6e-09
UNIPROTKB|E2R4V7	255	E2R4V7 "Uncharacterized protei	0.545	0.282	0.386	1.1e-06
UNIPROTKB|F1MTV9	294	NPM1 "Nucleophosmin" [Bos taur	0.545	0.244	0.4	1.2e-06
UNIPROTKB|Q3T160	294	NPM1 "Nucleophosmin" [Bos taur	0.545	0.244	0.4	1.2e-06
RGD|2324816	264	LOC100363073 "nucleophosmin 1-	0.545	0.272	0.386	1.2e-06
UNIPROTKB|I3LTH8	283	NPM1 "Uncharacterized protein"	0.545	0.254	0.386	1.4e-06
UNIPROTKB|E2REX9	291	E2REX9 "Uncharacterized protei	0.545	0.247	0.386	1.5e-06
MGI|MGI:106184	292	Npm1 "nucleophosmin 1" [Mus mu	0.545	0.246	0.386	1.5e-06

UNIPROTKB|Q9NLA3 Q9NLA3 "Nucleoplasmin-like protein ANO39" [Patiria pectinifera (taxid:7594)]

 Score = 189 (71.6 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 41/78 (52%), Positives = 53/78 (67%)

Query:     1 MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
             +FL QAV+GANAKEGE +VVE+E   F  D +K P+  LK  G+N  +PLD+    PPVT
Sbjct:    42 LFLKQAVLGANAKEGERNVVEIETENFDGDNVKQPLFSLKL-GLNESSPLDIGI-QPPVT 99

Query:    60 FKLVKGSGPIYLFGNHSV 77
             F L  GSGP++L G H +
Sbjct:   100 FILTAGSGPVFLSGQHMI 117

GO:0001556 "oocyte maturation" evidence=IEP

GO:0003677 "DNA binding" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0007067 "mitosis" evidence=NAS

FB|FBgn0016685 Nlp "Nucleoplasmin" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query:     5 QAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVK 64
             Q ++GA AKE E +VVEV     +  +++PI VLKA       P D+ F +  VTFKL+K
Sbjct:    36 QILLGAEAKENEFNVVEVNTP--KDSVQIPIAVLKAGETRAVNP-DVEFYESKVTFKLIK 92

Query:    65 GSGPIYLFGNHSV 77
             GSGP+Y+ G H++
Sbjct:    93 GSGPVYIHG-HNI 104

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0042393 "histone binding" evidence=NAS;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0042623 "ATPase activity, coupled" evidence=NAS

GO:0016584 "nucleosome positioning" evidence=NAS

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0039735 CG7911 [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 32/85 (37%), Positives = 49/85 (57%)

Query:     1 MFLFQAVIGANAKEGEVHVVEVEAM----GFRADIKLPIVVLKAAGVNNHAPLDLLFPDP 56
             + + Q  +G  AK GE +VV+ E      G +  +K+PI VLK     +  P ++ FP+ 
Sbjct:    36 LIIKQISLGPEAKTGEFNVVQAETNINDDGEKKTLKIPIAVLKVGETRSLRP-NVEFPNG 94

Query:    57 PVTFKLVKGSGPIYLFGNHSVGTGE 81
              VTFKLV+GSGP+++ G   +  GE
Sbjct:    95 SVTFKLVQGSGPVHVCGKVEMNFGE 119

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R4V7 E2R4V7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPMVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MTV9 NPM1 "Nucleophosmin" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 30/75 (40%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+HVVE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHVVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q3T160 NPM1 "Nucleophosmin" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 30/75 (40%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+HVVE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHVVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0006281 "DNA repair" evidence=ISS

GO:0046599 "regulation of centriole replication" evidence=ISS

GO:0060699 "regulation of endoribonuclease activity" evidence=ISS

GO:0032071 "regulation of endodeoxyribonuclease activity" evidence=ISS

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

RGD|2324816 LOC100363073 "nucleophosmin 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|I3LTH8 NPM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    43 LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 100

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   101 GPVHISGQHLVAVEE 115

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2REX9 E2REX9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:106184 Npm1 "nucleophosmin 1" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 29/75 (38%), Positives = 41/75 (54%)

Query:     8 IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
             +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct:    49 LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 106

Query:    67 GPIYLFGNHSVGTGE 81
             GP+++ G H V   E
Sbjct:   107 GPVHISGQHLVAVEE 121

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IMP

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IDA

GO:0001652 "granular component" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006334 "nucleosome assembly" evidence=ISO

GO:0006407 "rRNA export from nucleus" evidence=IMP;IDA

GO:0006884 "cell volume homeostasis" evidence=IMP;IDA

GO:0006913 "nucleocytoplasmic transport" evidence=ISO;IDA

GO:0006950 "response to stress" evidence=ISO

GO:0007098 "centrosome cycle" evidence=ISO

GO:0007569 "cell aging" evidence=ISO

GO:0008104 "protein localization" evidence=ISO;IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP;IDA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0010824 "regulation of centrosome duplication" evidence=IMP

GO:0010825 "positive regulation of centrosome duplication" evidence=IGI

GO:0010826 "negative regulation of centrosome duplication" evidence=ISO

GO:0015934 "large ribosomal subunit" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0016049 "cell growth" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0019843 "rRNA binding" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0030957 "Tat protein binding" evidence=ISO

GO:0031328 "positive regulation of cellular biosynthetic process" evidence=IMP;IDA

GO:0031616 "spindle pole centrosome" evidence=ISO

GO:0031648 "protein destabilization" evidence=IMP

GO:0032071 "regulation of endodeoxyribonuclease activity" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP;IDA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IMP;IDA

GO:0042393 "histone binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043023 "ribosomal large subunit binding" evidence=ISO

GO:0043024 "ribosomal small subunit binding" evidence=ISO

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IGI

GO:0043523 "regulation of neuron apoptotic process" evidence=ISO

GO:0045740 "positive regulation of DNA replication" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IDA

GO:0046599 "regulation of centriole replication" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048025 "negative regulation of mRNA splicing, via spliceosome" evidence=IDA

GO:0051054 "positive regulation of DNA metabolic process" evidence=ISO

GO:0051059 "NF-kappaB binding" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0060699 "regulation of endoribonuclease activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	2e-27

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 98.5 bits (246), Expect = 2e-27
 Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 3   LFQAVIGANAKEGEVHVVEVEAMGFR-ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFK 61
           L    +G  AK+ E +VVEVEAM +    +K+PI VLK   V     L      PPVTF+
Sbjct: 34  LRTICLGPEAKD-EFNVVEVEAMNYEGKKVKVPIAVLKP-SVLPMVSLGGFELTPPVTFR 91

Query: 62  LVKGSGPIYLFGNHSVGTGEPMGEDDDEESIDEDFSEEEVDESEILSKNLSQKFQV 117
           L  GSGP+++ G H V + E   +DD+E+  +ED  +EE D+ +   +  S   +V
Sbjct: 92  LKSGSGPVHISGQHLVASEEDESDDDEEDEEEED--DEEDDDEDESEEEESPVKKV 145

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF03066	149	Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301	100.0

>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins

Probab=100.00  E-value=5.7e-40  Score=250.97  Aligned_cols=82  Identities=44%  Similarity=0.631  Sum_probs=70.9

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeeee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGT   79 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~~   79 (132)
                      |+|||||||++|| +|+|||||++|||++ ++++||||||+| ++||++|+++|++|||||||++|||||||||||++++
T Consensus        32 L~L~~v~Lga~AK-dE~~vVe~e~~~~eg~~~kv~lAtLk~s-~~~~vsL~~~~~~ppVtf~L~~GsGPVhisG~~~~~~  109 (149)
T PF03066_consen   32 LSLRQVCLGAGAK-DELNVVEVEAMNYEGKPIKVPLATLKMS-VQPMVSLDGFEITPPVTFRLKCGSGPVHISGQHLVAM  109 (149)
T ss_dssp             EEEEEEEE-TTS--SSEEEEEEEEEBTTSCEEEEEEEEEBTT-TBSEEEEEEEEESSSEEEEEEESSS-EEEEEEEEEE-
T ss_pred             EEEEEeecCCCcc-CceeEEEEEeccCCCCeeEEEEEEecCC-ccceEEcCCcccCCCEEEEEEecCCCEEeeCcccccc
Confidence            7899999999999 799999999999998 799999999999 9999999999989999999999999999999999998


Q ss_pred             cCCCC
Q psy5840          80 GEPMG   84 (132)
Q Consensus        80 ~e~~e   84 (132)
                      +++.+
T Consensus       110 ~~d~~  114 (149)
T PF03066_consen  110 EEDEE  114 (149)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            87654

They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1nlq_A	108	The Crystal Structure Of Drosophila Nlp-Core Provid		3e-09
2vtx_A	120	Activation Of Nucleoplasmin, An Oligomeric Histone		3e-05
2p1b_A	122	Crystal Structure Of Human Nucleophosmin-Core Lengt		4e-05
2vtx_J	120	Activation Of Nucleoplasmin, An Oligomeric Histone		7e-05
1xb9_A	114	The Structure And Function Of Xenopus No38-Core, A		8e-05
1k5j_A	124	The Crystal Structure Of Nucleoplasmin-Core Length		9e-05

>pdb|1NLQ|A Chain A, The Crystal Structure Of Drosophila Nlp-Core Provides Insight Into Pentamer Formation And Histone Binding Length = 108

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + Q ++GA AKE E +VVEV     +  +++PI VLKA       P D+ F +  VTF
Sbjct: 32  LVIKQILLGAEAKENEFNVVEVNTP--KDSVQIPIAVLKAGETRAVNP-DVEFYESKVTF 88
Query: 61  KLVKGSGPIYLFGNH 75
           KL+KGSGP+Y+ G++
Sbjct: 89  KLIKGSGPVYIHGHN 103

>pdb|2VTX|A Chain A, Activation Of Nucleoplasmin, An Oligomeric Histone Chaperone, Challenges Its Stability Length = 120

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + L    +G  AK+ E H+VE+      A+  +PI  LK + +   A +  +  DPPVTF
Sbjct: 45  LALRTVCLGDKAKD-EFHIVEIVDQEEGAEKSVPIATLKPS-ILPMATMVGIELDPPVTF 102
Query: 61  KLVKGSGPIYLFGNH 75
           +L  GSGP+Y+ G H
Sbjct: 103 RLKAGSGPLYISGQH 117

>pdb|2P1B|A Chain A, Crystal Structure Of Human Nucleophosmin-Core Length = 122

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 8   IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
           +GA AK+ E+H+VE EAM +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct: 41  LGAGAKD-ELHIVEAEAMNYEGSPIKVTLATLKMS-VQPTVSLGGFEITPPVVLRLKCGS 98
Query: 67  GPIYLFGNHSVGTGEPM 83
           GP+++ G H V   E +
Sbjct: 99  GPVHISGQHLVAVEEDL 115

>pdb|2VTX|J Chain J, Activation Of Nucleoplasmin, An Oligomeric Histone Chaperone, Challenges Its Stability Length = 120

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 3   LFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKL 62
           L    +G  AK+ E H+VE+      A+  +PI  LK + +   A +  +  DPPVTF+L
Sbjct: 47  LRTVCLGDKAKD-EFHIVEIVDQEEGAEKVVPIATLKPS-ILPMATMVGIELDPPVTFRL 104
Query: 63  VKGSGPIYLFGNH 75
             GSGP+Y+ G H
Sbjct: 105 KAGSGPLYISGQH 117

>pdb|1XB9|A Chain A, The Structure And Function Of Xenopus No38-Core, A Histone Chaperone In The Nucleolus Length = 114

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 8   IGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGS 66
           +GA+AK+ E+HVVE E + +    IK+ +  LK + V     L      PPV  +L  GS
Sbjct: 41  LGASAKD-ELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEITPPVILRLKSGS 98
Query: 67  GPIYLFGNHSVG 78
           GP+Y+ G H V 
Sbjct: 99  GPVYVSGQHLVA 110

>pdb|1K5J|A Chain A, The Crystal Structure Of Nucleoplasmin-Core Length = 124

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 3   LFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKL 62
           L    +G  AK+ E H+VE+      A+  +PI  LK + +   A +  +   PPVTF+L
Sbjct: 47  LRTVCLGDKAKD-EFHIVEIVTQEEGAEKSVPIATLKPS-ILPMATMVGIELTPPVTFRL 104
Query: 63  VKGSGPIYLFGNH 75
             GSGP+Y+ G H
Sbjct: 105 KAGSGPLYISGQH 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1nlq_A	108	Nucleoplasmin-like protein; DNLP, chaperone, histo	5e-21
1k5j_A	124	Nucleoplasmin core; beta-barrel, jellyroll, beta-b	2e-19
1xe0_A	114	Nucleophosmin; drosophila nucleoplasmin-like prote	4e-19
3t30_B	110	Nucleoplasmin-2; beta-barrel jelly roll topology,	5e-16

>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1 Length = 108

 Score = 80.4 bits (198), Expect = 5e-21
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + + Q ++GA AKE E +VVEV        +++PI VLKA G       D+ F +  VTF
Sbjct: 32  LVIKQILLGAEAKENEFNVVEVNTPK--DSVQIPIAVLKA-GETRAVNPDVEFYESKVTF 88

Query: 61  KLVKGSGPIYLFGNH 75
           KL+KGSGP+Y+ G++
Sbjct: 89  KLIKGSGPVYIHGHN 103

>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J Length = 124

 Score = 77.1 bits (189), Expect = 2e-19
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
           + L    +G  AK+ E H+VE+      A+  +PI  LK   +   A +  +   PPVTF
Sbjct: 45  LALRTVCLGDKAKD-EFHIVEIVTQEEGAEKSVPIATLKP-SILPMATMVGIELTPPVTF 102

Query: 61  KLVKGSGPIYLFGNHSVGTGE 81
           +L  GSGP+Y+ G H     +
Sbjct: 103 RLKAGSGPLYISGQHVAMEED 123

>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A Length = 114

 Score = 75.8 bits (186), Expect = 4e-19
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD-IKLPIVVLKAAGVNNHAPLDLLFPDPPVT 59
           + L    +GA+AK+ E+HVVE E + +    IK+ +  LK   V     L      PPV 
Sbjct: 34  LSLRTVSLGASAKD-ELHVVEAEGINYEGKTIKIALASLKP-SVQPTVSLGGFEITPPVI 91

Query: 60  FKLVKGSGPIYLFGNHSVGTGE 81
            +L  GSGP+Y+ G H V   +
Sbjct: 92  LRLKSGSGPVYVSGQHLVALED 113

>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} Length = 110

 Score = 67.8 bits (165), Expect = 5e-16
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 1   MFLFQAVIGANAKEGEVHVVEVEAMGFRAD---IKLPIVVLKAAGVNNHAPLDLLFPDPP 57
           + L    +G  AKE E+H VE+     + D     + I  L+A+ +   + + +    PP
Sbjct: 32  LLLHTICLGEKAKE-EMHRVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLS-PP 89

Query: 58  VTFKLVKGSGPIYLFGNHSV 77
           VTF+L  GSGP++L G    
Sbjct: 90  VTFQLRAGSGPVFLSGQERY 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1xe0_A	114	Nucleophosmin; drosophila nucleoplasmin-like prote	100.0
3t30_B	110	Nucleoplasmin-2; beta-barrel jelly roll topology,	100.0
1k5j_A	124	Nucleoplasmin core; beta-barrel, jellyroll, beta-b	100.0
1nlq_A	108	Nucleoplasmin-like protein; DNLP, chaperone, histo	99.97

>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A

Probab=100.00  E-value=1.7e-34  Score=212.97  Aligned_cols=77  Identities=38%  Similarity=0.661  Sum_probs=71.2

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceecc-CccCCCCCeEEEEEecccceEeeeceeee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPL-DLLFPDPPVTFKLVKGSGPIYLFGNHSVG   78 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~L-dl~f~~pPVtF~L~~GSGPVhIsGqhlv~   78 (132)
                      |+|||||||++|| ||+|||||++|||++ ++++|||+||+| ++||++| |+.| +|||||+|++|||||||||||+++
T Consensus        34 L~l~~~~LG~~AK-dE~nvVEve~~~~~g~~ikv~la~Lk~s-~~p~v~L~~le~-~ppVtF~L~~GsGPVhisGqh~v~  110 (114)
T 1xe0_A           34 LSLRTVSLGASAK-DELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEI-TPPVILRLKSGSGPVYVSGQHLVA  110 (114)
T ss_dssp             EEEEEEEECTTCC-SSCEEEEEEEECTTSCEEEEEEEEEBTT-TBCEEEEEEEEE-CSCEEEEEEESCCCEEEEEEEEEC
T ss_pred             EEEEEEEcCCCcC-CCceEEEEEecCCCCCcceEEEEEEcCC-CcceEEeCCcEE-CCCEEEEEEEcCCCEEEEeEEEEE
Confidence            6899999999999 899999999999986 999999999999 9999999 5556 699999999999999999999998


Q ss_pred             ec
Q psy5840          79 TG   80 (132)
Q Consensus        79 ~~   80 (132)
                      ++
T Consensus       111 ~~  112 (114)
T 1xe0_A          111 LE  112 (114)
T ss_dssp             --
T ss_pred             Ee
Confidence            65

>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0

Probab=100.00  E-value=1.8e-34  Score=211.68  Aligned_cols=75  Identities=32%  Similarity=0.454  Sum_probs=65.4

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEe--cccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEA--MGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSV   77 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea--~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv   77 (132)
                      |+|||||||++|| ||+|||||++  |+|++ ++++||||||+| ++||++|+++.++|||||||++|||||||||||++
T Consensus        32 L~Lr~v~LG~~AK-dE~nvVEve~~~~~~~~~~i~v~lAtLk~s-~~p~vsl~g~ei~pPVtf~L~~GSGPV~isGqh~~  109 (110)
T 3t30_B           32 LLLHTICLGEKAK-EEMHRVEILPPANQEDKKMQPVTIASLQAS-VLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERY  109 (110)
T ss_dssp             EEEEEEEECTTCC-SSCEEEEEECC--------CCEEEEEEBTT-TBCEEEEEEEEECSSEEEEEEESCCCEEEEEEEEC
T ss_pred             EEEEEEEeCCCcc-cceeEEEEEeccccCCCCceeEEEEEEecc-ccccEEcCCeEeCCCEEEEEEecCCCEEeeeeeec
Confidence            6899999999999 8999999999  56775 899999999999 99999987666689999999999999999999986

>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J

Probab=100.00  E-value=2.7e-33  Score=209.20  Aligned_cols=76  Identities=34%  Similarity=0.549  Sum_probs=68.8

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeeee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVGT   79 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~~   79 (132)
                      |+|||||||++|| ||+|||||++ ||++ ++++|||+||++ ++||++|+++.++|||||+|++|||||||+|||+++.
T Consensus        45 L~L~~~~LG~~AK-dE~nVVEve~-n~~g~~ikv~latLk~s-~~p~vsl~g~e~~pPVtF~L~~GSGPVhisGqhlv~~  121 (124)
T 1k5j_A           45 LALRTVCLGDKAK-DEFHIVEIVT-QEEGAEKSVPIATLKPS-ILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVAME  121 (124)
T ss_dssp             EEEEEEEECTTSC-SSCEEEEEEE-CCC---EEEEEEEEBTT-TBCEEECCSCEECSCEEEEEEECCCCEEEEEEEEC--
T ss_pred             EEEEEEEcCCCcC-CcceEEEEEe-CCCCCccEEEEEEEccc-ccccEEeCCceeCCCEEEEEEEcCCCeEEEeEEEEEe
Confidence            6899999999999 8999999999 9986 999999999999 9999999766668999999999999999999999874

>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1

Probab=99.97  E-value=8e-32  Score=196.59  Aligned_cols=75  Identities=41%  Similarity=0.685  Sum_probs=70.5

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCCCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVG   78 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~   78 (132)
                      |+|||||||++||+||+|||||++  |++++++||||||+| ++||++||+.|.+|||||+|++|||||||||||+++
T Consensus        32 L~L~~a~LG~~aK~dE~~vVev~~--~~~~~kv~LatLk~~-~~~~~~l~l~f~~~pVtf~L~~GsGPVhisG~h~~~  106 (108)
T 1nlq_A           32 LVIKQILLGAEAKENEFNVVEVNT--PKDSVQIPIAVLKAG-ETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNIKD  106 (108)
T ss_dssp             EEEEEEEECTTSCBTCEEEEEEEE--GGGTEEEEEEEEEBT-TBSEECCCEEEESSCEEEEEEESCCCEEEEEEEECC
T ss_pred             EEEEEEEcCCCccCCCcEEEEEEe--CCCCcEEEEEEECCC-CcceEecceEEeCCCEEEEEEecCCCEEEEeEEEec
Confidence            689999999999988999999999  566999999999999 999999998886699999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1k5ja_	105	b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis	3e-22
d1xe0a_	108	b.121.3.1 (A:) Nucleophosmin (NO38) {African clawe	7e-22
d1nlqa_	105	b.121.3.1 (A:) Chromatin decondensation protein 1	5e-17

>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId: 8355]} Length = 105

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Nucleoplasmin core
species: Xenopus laevis [TaxId: 8355]

 Score = 82.1 bits (203), Expect = 3e-22
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 2   FLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFK 61
            L    +G  AK+ E H+VE+      A+  +PI  LK   +   A +  +   PPVTF+
Sbjct: 32  ALRTVCLGDKAKD-EFHIVEIVTQEEGAEKSVPIATLKP-SILPMATMVGIELTPPVTFR 89

Query: 62  LVKGSGPIYLFGNH 75
           L  GSGP+Y+ G H
Sbjct: 90  LKAGSGPLYISGQH 103

>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 108

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Nucleophosmin (NO38)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 81.3 bits (201), Expect = 7e-22
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 2   FLFQAVIGANAKEGEVHVVEVEAMGFR-ADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTF 60
            L    +GA+AK+ E+HVVE E + +    IK+ +  LK   V     L      PPV  
Sbjct: 33  SLRTVSLGASAKD-ELHVVEAEGINYEGKTIKIALASLKP-SVQPTVSLGGFEITPPVIL 90

Query: 61  KLVKGSGPIYLFGNHSV 77
           +L  GSGP+Y+ G H V
Sbjct: 91  RLKSGSGPVYVSGQHLV 107

>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Chromatin decondensation protein 1 (Crp1, Nlp)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.8 bits (168), Expect = 5e-17
 Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 5   QAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVK 64
           Q ++GA AKE E +VVEV        +++PI VLKA G       D+ F +  VTFKL+K
Sbjct: 34  QILLGAEAKENEFNVVEVNTPK--DSVQIPIAVLKA-GETRAVNPDVEFYESKVTFKLIK 90

Query: 65  GSGPIYLFGNH 75
           GSGP+Y+ G++
Sbjct: 91  GSGPVYIHGHN 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1xe0a_	108	Nucleophosmin (NO38) {African clawed frog (Xenopus	100.0
d1k5ja_	105	Nucleoplasmin core {Xenopus laevis [TaxId: 8355]}	100.0
d1nlqa_	105	Chromatin decondensation protein 1 (Crp1, Nlp) {Fr	99.92

>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Nucleophosmin (NO38)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.8e-36  Score=220.26  Aligned_cols=76  Identities=38%  Similarity=0.639  Sum_probs=73.3

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCC-CeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceeee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRA-DIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSVG   78 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~-~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv~   78 (132)
                      |+|||||||++|| ||+|||||++|||++ ++++|||+||+| ++||++|+++|++|||||||++|||||||+|||+++
T Consensus        32 L~L~~~cLg~~AK-dE~nvVEve~~~~~g~~i~vpiA~Lk~s-~~p~v~l~~~e~~pPVtF~L~~GsGPVhisGqHlva  108 (108)
T d1xe0a_          32 LSLRTVSLGASAK-DELHVVEAEGINYEGKTIKIALASLKPS-VQPTVSLGGFEITPPVILRLKSGSGPVYVSGQHLVA  108 (108)
T ss_dssp             EEEEEEEECTTCC-SSCEEEEEEEECTTSCEEEEEEEEEBTT-TBCEEEEEEEEECSCEEEEEEESCCCEEEEEEEEEC
T ss_pred             EEEEeeecCCCcc-cceeEEEEeccCCCCCeeeeEEEEeecc-ccceEEecccccCCCeEEEEecCCCCEEEeeEEeeC
Confidence            6899999999999 799999999999997 899999999999 999999999999999999999999999999999974

>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId: 8355]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Nucleoplasmin core
species: Xenopus laevis [TaxId: 8355]

Probab=100.00  E-value=2.7e-34  Score=207.81  Aligned_cols=74  Identities=36%  Similarity=0.578  Sum_probs=66.9

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCCCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeecee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHS   76 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhl   76 (132)
                      |+|||||||++|| ||+|||||++++.+.++++|||+||+| ++||++|++++++|||||||++|||||||||||+
T Consensus        31 L~lk~~~Lg~~AK-dE~nvVEv~~~~~~~~i~vpiA~Lk~s-~~p~vsl~~~e~~pPVtF~L~~GsGPVhisGqHl  104 (105)
T d1k5ja_          31 LALRTVCLGDKAK-DEFHIVEIVTQEEGAEKSVPIATLKPS-ILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV  104 (105)
T ss_dssp             EEEEEEEECTTSC-SSCEEEEEEECCC---EEEEEEEEBTT-TBCEEECCSCEECSCEEEEEEECCCCEEEEEEEE
T ss_pred             EEEEEEEecCCcc-CcceEEEEeeCCCCCceEEEEEEeecc-ccccEEcCCceeCCCeEEEEecCCCCEEEeeEec
Confidence            6899999999999 799999998854334999999999999 9999999888889999999999999999999997

>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
superfamily: Nucleoplasmin-like core domain
family: Nucleoplasmin-like core domain
domain: Chromatin decondensation protein 1 (Crp1, Nlp)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.3e-25  Score=159.04  Aligned_cols=74  Identities=42%  Similarity=0.683  Sum_probs=68.6

Q ss_pred             CeeeeeecCCCCCCCceEEEEEEecccCCCeeeEEEEeecCcccceeccCccCCCCCeEEEEEecccceEeeeceee
Q psy5840           1 MFLFQAVIGANAKEGEVHVVEVEAMGFRADIKLPIVVLKAAGVNNHAPLDLLFPDPPVTFKLVKGSGPIYLFGNHSV   77 (132)
Q Consensus         1 L~Lr~vcLGa~AK~dE~nvVEvea~~~~~~ikv~IAtLk~s~~~p~v~Ldl~f~~pPVtF~L~~GSGPVhIsGqhlv   77 (132)
                      |+|+|||||++||++++|+|++.+..  +++++|||||+++ .++|++||++|..+|++|++++|+|||||+|||+.
T Consensus        30 L~lsqa~Lg~~ak~~e~~~V~v~~~~--~~~~~~IatL~~~-~~~~~~Ldl~f~~~~~~~~~~~G~g~VhlsGy~i~  103 (105)
T d1nlqa_          30 LVIKQILLGAEAKENEFNVVEVNTPK--DSVQIPIAVLKAG-ETRAVNPDVEFYESKVTFKLIKGSGPVYIHGHNIK  103 (105)
T ss_dssp             EEEEEEEECTTSCBTCEEEEEEEEGG--GTEEEEEEEEEBT-TBSEECCCEEEESSCEEEEEEESCCCEEEEEEEEC
T ss_pred             EEEEEEEeCCCCccCccEEEEEEEcC--CCeEEEEEEecCC-CceeeeeccceeCCCcEEEEEEcCcCEEEEEEEcc
Confidence            68999999999998899999998642  5789999999999 99999999999888999999999999999999985