Psyllid ID: psy5891

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MSKIKAEDLFVPTARRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLLTY
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccccccccHHHHHHccccEEEcccccccccccEEEcccccccEEEEEEEEEcccEEEEEcEEEEEcccccHHHHHHHcccEEEEEcccccEEEcccccccEEEEEEEccccccccEEEEEEEEEEccccEEcccccccccccccccccccEEHHHHHHHHccccccccccccccEEcccccccccccccHHHcccccccccccccccccccccccccEEEEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHcccEEEccccccccEEEEEcccEEEEEcccHHHHHHHcccccccEEEcHHHHHHHcHHEEEEEcccccccccccccHHccccccccccccccccHHHHHHHcccccccccccEEEEEEcccccccccccccHHHHHcccccccccccccccccccccccEEEEEEcccHHHHHHHHccc
Coil and Loop (DISEMBL)
mskikaedlfvptaRRHKITSALaglnskeeeeeeqedsafsdesaddnssdedetvepKVFYAEVTKKLkltgvpmkiyKKTAFIKDMFNSTLEVAKfegakirtvsgIRGQIKKALnkpqgafratfedkimlSDIVFCRtwykvdipklynpvtslllppeqkdswtgmkttgqlkrerglhndpqfdsmytVSKVkrtgvystrasitlrkakgktslglfsnpfftelskkpkTVFLVMVLPSIWRKATHLLTY
Flexible Loop (DISEMBL)
mskikaedlfvptarrhkitsalaglnskeeeeeeqedsafsdesaddnssdedetvepkvFYAEvtkklkltgvpmkiYKKTAFIKDMFNSTLEVAkfegakirtvsgirgqikkalnkpqgafratfedkimLSDIVFCRTWYKVDIPKLYNPVTSlllppeqkdswtgMKTTGQLkrerglhndpqfdsmytvskvkrtgvystrasitlrkakgktslglfsnpfftelskkpkTVFLVMVLPSiwrkathllty
Low Complexity Region (SEG)
MSKIKAEDLFVPTARRHKITSALAGLNskeeeeeeqedsafsdesaddnssdedeTVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLLTY
Disordered region (IsUnstruct)
***********************************************************KVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLL*******************************MYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLL**
Disordered Region (DISOPRED)
*****AE*LFVPTARRHKI************************ESADDNSSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQK***T*MKTTGQLKRERG*H*****************GVYSTRASI*********************************VLPSIWRK**HLLT*
Disordered Region (DISEMBL)
MSKIKAEDLFVPTARRHKITSALAG********************************EPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLLTY
Disordered Region (DISPRO)
********LFVPTARRHKITSALAGL****************************ETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLLTY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKIKAEDLFVPTARRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASITLRKAKGKTSLGLFSNPFFTELSKKPKTVFLVMVLPSIWRKATHLLTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q14692	1282	Ribosome biogenesis prote	yes	N/A	0.498	0.100	0.682	1e-46
Q08965	1183	Ribosome biogenesis prote	yes	N/A	0.521	0.114	0.572	9e-40
O94653	1121	Ribosome biogenesis prote	yes	N/A	0.494	0.114	0.592	4e-37
Q5SWD9	803	Pre-rRNA-processing prote	no	N/A	0.366	0.118	0.326	2e-05
Q2NL82	804	Pre-rRNA-processing prote	no	N/A	0.366	0.118	0.326	2e-05
Q5XGY1	815	Pre-rRNA-processing prote	N/A	N/A	0.312	0.099	0.329	5e-05
Q5R434	805	Pre-rRNA-processing prote	no	N/A	0.366	0.118	0.316	5e-05
Q9VP47	814	Pre-rRNA-processing prote	no	N/A	0.312	0.099	0.329	0.0001
O13956	783	Ribosome biogenesis prote	no	N/A	0.281	0.093	0.378	0.0002

>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 103/129 (79%)

Query: 66   VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
            + KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P+GAF
Sbjct: 1023 IVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAF 1082

Query: 126  RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
            RA+FEDK+++SDIVF RTWY V IP  YNPVTSLL P  +KD+W+GM+TTGQL+   G+ 
Sbjct: 1083 RASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVR 1142

Query: 186  NDPQFDSMY 194
                 DS+Y
Sbjct: 1143 LKANKDSLY 1151

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)

>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1

 Score =  164 bits (414), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 104/138 (75%), Gaps = 3/138 (2%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            E+ KKLKL G P KI+K TAFIKDMF+S +EVA+FEGA+I+TVSGIRG+IK+AL+KP+G 
Sbjct: 927  EIVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKPEGH 986

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            +RA FEDKI++SDIV  R+WY V + K YNPVTSLLL  ++K  W G++ TGQ++    L
Sbjct: 987  YRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLL--KEKTEWKGLRLTGQIRAAMNL 1044

Query: 185  HNDPQFDSMY-TVSKVKR 201
                  DS Y  + +V+R
Sbjct: 1045 ETPSNPDSAYHKIERVER 1062

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus. The depletion of BMS1 interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 95/130 (73%), Gaps = 2/130 (1%)

Query: 65  EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
           ++ KKLKLTGVP KI+K TAFIK MF+S LEVAKFEGA IRTVSGIRGQ+KKA+++  G 
Sbjct: 865 DIVKKLKLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH 924

Query: 125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
           FRATFEDKI++SDIVF R WY V + K    VT+LL     K  W GM+ TG+++ E GL
Sbjct: 925 FRATFEDKILMSDIVFLRAWYPVQVRKFCTMVTNLL--ETDKTEWNGMRLTGEVRHELGL 982

Query: 185 HNDPQFDSMY 194
               + +S Y
Sbjct: 983 KTPLRPNSQY 992

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           V K++ L+G P KI+ K A ++ MF +  +V  F+  ++RT  G RG IK+ L    G  
Sbjct: 692 VIKRVVLSGHPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHIKEPLGT-HGHM 750

Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
           + +F+ K+   D V    + +V  PK  Y+P     +P
Sbjct: 751 KCSFDGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 787

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Mus musculus (taxid: 10090)

>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           V K++ L+G P KI+ K A ++ MF +  +V  F+  ++RT  G RG IK+ L    G  
Sbjct: 693 VIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 751

Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
           + +F+ K+   D V    + +V  PK  Y+P     +P
Sbjct: 752 KCSFDGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 788

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Homo sapiens (taxid: 9606)

>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           V K++ L+G P KI K+TA ++ MF +  +V  F+  ++RT  G RG IK+ L    G  
Sbjct: 704 VIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 762

Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
           +  F+ ++   D V    + +V
Sbjct: 763 KCHFDGQLKSQDTVLMNLYKRV 784

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Xenopus laevis (taxid: 8355)

>sp|Q5R434|TSR1_PONAB Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           V K++ L+G P+K++ K A ++ MF +  +V  F+  ++RT  G RG IK+ L    G  
Sbjct: 694 VIKRVVLSGHPLKMFTKMAVVRYMFFNREDVLWFKPVELRTKWGRRGHIKEPLGT-HGHM 752

Query: 126 RATFEDKIMLSDIVFCRTWYKVDIPKL-YNPVTSLLLP 162
           + +F  K+   D V    + +V  PK  Y+P     +P
Sbjct: 753 KCSFNGKLKSQDTVLMNLYKRV-FPKWTYDPYVPEPVP 789

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Pongo abelii (taxid: 9601)

>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           V K++ L+G PM+I +K+A I+ MF    +V  F+  K+RT  G  G IK++L    G  
Sbjct: 699 VLKRVVLSGHPMRINRKSASIRYMFFYKEDVEYFKPVKLRTKCGRLGHIKESLGT-HGHM 757

Query: 126 RATFEDKIMLSDIVFCRTWYKV 147
           +  F+ ++   D  F   + +V
Sbjct: 758 KCYFDGQLRSYDTAFMYLYKRV 779

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Drosophila melanogaster (taxid: 7227)

>sp|O13956|TSR1_SCHPO Ribosome biogenesis protein tsr1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H4.15 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           + K+  LTG P K++KK   I+ MF +  +V  F+  ++ T  G  G IK+ L    G F
Sbjct: 688 IAKRAVLTGHPFKVHKKLVTIRYMFFNPEDVIWFKPIQLFTKQGRTGYIKEPLGT-HGYF 746

Query: 126 RATFEDKIMLSDIV 139
           +ATF  KI + D V
Sbjct: 747 KATFNGKITVQDTV 760

Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
383863223	1238	PREDICTED: uncharacterized protein LOC10	0.505	0.105	0.801	9e-58
328786694	1219	PREDICTED: hypothetical protein LOC41404	0.501	0.106	0.807	2e-57
322782539	1224	hypothetical protein SINV_80643 [Solenop	0.505	0.107	0.786	5e-57
332021539	1239	Ribosome biogenesis protein BMS1-like pr	0.505	0.105	0.778	6e-57
307173636	1184	Ribosome biogenesis protein BMS1-like pr	0.501	0.109	0.792	7e-57
350423434	1260	PREDICTED: hypothetical protein LOC10074	0.505	0.103	0.786	1e-56
193598807	1225	PREDICTED: hypothetical protein LOC10016	0.505	0.106	0.793	4e-56
345488166	1270	PREDICTED: hypothetical protein LOC10012	0.501	0.102	0.807	5e-56
340719399	1258	PREDICTED: hypothetical protein LOC10064	0.505	0.104	0.778	6e-56
307207588	832	Ribosome biogenesis protein BMS1-like pr	0.505	0.157	0.770	2e-54

>gi|383863223|ref|XP_003707081.1| PREDICTED: uncharacterized protein LOC100876332 [Megachile rotundata]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 118/131 (90%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            ++ KKLKLTGVP+KIYKKTAFIKDMFNS LEVAKFEGAKI+TVSGIRGQIKKA++KP+G 
Sbjct: 987  QIMKKLKLTGVPLKIYKKTAFIKDMFNSVLEVAKFEGAKIKTVSGIRGQIKKAVSKPEGC 1046

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKI+LSDIVFCRTWYKVD+PK YNPVTSLLLPP++K+ W GMKTTGQLKRER +
Sbjct: 1047 FRATFEDKILLSDIVFCRTWYKVDVPKFYNPVTSLLLPPDEKNRWQGMKTTGQLKRERNI 1106

Query: 185  HNDPQFDSMYT 195
                  DSMYT
Sbjct: 1107 RVPANTDSMYT 1117

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786694|ref|XP_397483.4| PREDICTED: hypothetical protein LOC414048 [Apis mellifera]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 117/130 (90%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            ++ KKLKLTGVPMKIYKKTAFIKDMFNS LEVAKFEGAKI+TVSGIRGQIKKA++KP+G 
Sbjct: 968  QIMKKLKLTGVPMKIYKKTAFIKDMFNSPLEVAKFEGAKIKTVSGIRGQIKKAVSKPEGC 1027

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKI+LSDIVFCRTWYKVD+PK YNPVTSLLLP E+K+ W GMKTTGQLKRE+ +
Sbjct: 1028 FRATFEDKILLSDIVFCRTWYKVDVPKFYNPVTSLLLPLEEKNQWQGMKTTGQLKREKNI 1087

Query: 185  HNDPQFDSMY 194
            H     DSMY
Sbjct: 1088 HIHANKDSMY 1097

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782539|gb|EFZ10488.1| hypothetical protein SINV_80643 [Solenopsis invicta]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/131 (78%), Positives = 118/131 (90%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            +V KKLKLTGVPMKIY+KTAFIKDMFNS+LEVAKFEGA+I+TVSGIRGQIKKA+ KP+G 
Sbjct: 986  QVVKKLKLTGVPMKIYRKTAFIKDMFNSSLEVAKFEGARIKTVSGIRGQIKKAIAKPEGC 1045

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKIMLSDIVFCRTWYKVD+P+ YNPVTSLLLPP +K+ W GMKTTGQLKRE+ +
Sbjct: 1046 FRATFEDKIMLSDIVFCRTWYKVDVPRFYNPVTSLLLPPAEKNQWRGMKTTGQLKREKNI 1105

Query: 185  HNDPQFDSMYT 195
              +   DS+YT
Sbjct: 1106 RAEANKDSIYT 1116

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021539|gb|EGI61904.1| Ribosome biogenesis protein BMS1-like protein [Acromyrmex echinatior]

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 117/131 (89%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            EV KKLKL GVPMKI++KTAFIKDMFNS LEVAKFEGA+I+TVSGIRGQIKKA++KP+G 
Sbjct: 988  EVMKKLKLIGVPMKIHRKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKKAISKPEGC 1047

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKIMLSDIVFCRTWYKVD+P+ YNPVTSLLLPP +K  W GMKTTGQLKRE+ +
Sbjct: 1048 FRATFEDKIMLSDIVFCRTWYKVDVPRFYNPVTSLLLPPAEKSRWHGMKTTGQLKREKNI 1107

Query: 185  HNDPQFDSMYT 195
            H +   +S+YT
Sbjct: 1108 HAEANMNSIYT 1118

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173636|gb|EFN64487.1| Ribosome biogenesis protein BMS1-like protein [Camponotus floridanus]

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 115/130 (88%)

Query: 66   VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
            V KKLKLTGVP+KIY+KTAFIKDMFNS LEVAKFEGA+I+TVSGIRGQIK+A+ KP+G F
Sbjct: 934  VVKKLKLTGVPLKIYRKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKRAVAKPEGCF 993

Query: 126  RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
            RATFEDKIMLSDIVFCRTWYKVD+P+ YNPVTSLLLP  +K+ W GMKTTGQLKRER +H
Sbjct: 994  RATFEDKIMLSDIVFCRTWYKVDVPRFYNPVTSLLLPSAEKNQWRGMKTTGQLKRERNIH 1053

Query: 186  NDPQFDSMYT 195
                 DSMYT
Sbjct: 1054 GVANTDSMYT 1063

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423434|ref|XP_003493481.1| PREDICTED: hypothetical protein LOC100743997 [Bombus impatiens]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/131 (78%), Positives = 117/131 (89%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            ++ KKLKLTGVPMKIYKKTAFIKDMFNS LEVAKFEGA+I+TVSGIRGQIKKA++KP+G 
Sbjct: 1010 QIMKKLKLTGVPMKIYKKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKKAVSKPEGC 1069

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKI+LSDIVFCRTWYK+D+PK YNPVTSLLLP E+K+ W GMKTTGQLKRE+ +
Sbjct: 1070 FRATFEDKILLSDIVFCRTWYKIDVPKFYNPVTSLLLPVEEKNRWQGMKTTGQLKREKNI 1129

Query: 185  HNDPQFDSMYT 195
                  DSMYT
Sbjct: 1130 RAPANKDSMYT 1140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193598807|ref|XP_001951128.1| PREDICTED: hypothetical protein LOC100169539 [Acyrthosiphon pisum]

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/131 (79%), Positives = 118/131 (90%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            +VTKKLKLTG P+KIYK+TAFIKDMFNSTLEV KFEGA+I+TVSGIRGQIKKA  KP+G+
Sbjct: 979  QVTKKLKLTGSPLKIYKRTAFIKDMFNSTLEVTKFEGARIKTVSGIRGQIKKACPKPEGS 1038

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKI +SDIVFCRTWY V++PKLYNPVTSLLLP  +K+SW GMKTTGQLKRE+G+
Sbjct: 1039 FRATFEDKIKISDIVFCRTWYNVEVPKLYNPVTSLLLPLNEKNSWRGMKTTGQLKREQGI 1098

Query: 185  HNDPQFDSMYT 195
               PQ DSMYT
Sbjct: 1099 KGLPQNDSMYT 1109

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488166|ref|XP_001605043.2| PREDICTED: hypothetical protein LOC100121428 [Nasonia vitripennis]

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 113/130 (86%)

Query: 66   VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
            V KKLKLTGVP KIYKKTAFIKDMF S LEVAKFEGAKI+TVSGIRGQIKKA+++P+G F
Sbjct: 1016 VVKKLKLTGVPYKIYKKTAFIKDMFTSALEVAKFEGAKIKTVSGIRGQIKKAVSRPEGCF 1075

Query: 126  RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
            RATFEDKI LSDIVFCRTWY+VDIPK YNPVTSLLLPPEQK  W GMKTTGQLKRE  L 
Sbjct: 1076 RATFEDKIQLSDIVFCRTWYRVDIPKFYNPVTSLLLPPEQKSQWKGMKTTGQLKRELNLK 1135

Query: 186  NDPQFDSMYT 195
              P  D++YT
Sbjct: 1136 ATPNTDNLYT 1145

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719399|ref|XP_003398141.1| PREDICTED: hypothetical protein LOC100649776 [Bombus terrestris]

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/131 (77%), Positives = 116/131 (88%)

Query: 65   EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            ++ KKLKLTG PMKIYKKTAFIKDMFNS LEVAKFEGA+I+TVSGIRGQIKKA++KP+G 
Sbjct: 997  QIMKKLKLTGFPMKIYKKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKKAVSKPEGC 1056

Query: 125  FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
            FRATFEDKI+LSDIVFCRTWYK+D+PK YNPVTSLLLP E+K+ W GMKTTGQLKRE+ +
Sbjct: 1057 FRATFEDKILLSDIVFCRTWYKIDVPKFYNPVTSLLLPVEEKNQWQGMKTTGQLKREKNI 1116

Query: 185  HNDPQFDSMYT 195
                  DSMYT
Sbjct: 1117 RAPANKDSMYT 1127

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207588|gb|EFN85252.1| Ribosome biogenesis protein BMS1-like protein [Harpegnathos saltator]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 114/131 (87%)

Query: 65  EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
           +V KKLKLTGVPMKIY+KTAFIKDMFNS LEVAKFEGA+I+TVSGIRGQIKKA  KP+G 
Sbjct: 579 QVVKKLKLTGVPMKIYRKTAFIKDMFNSALEVAKFEGARIKTVSGIRGQIKKAAAKPEGC 638

Query: 125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
           FRATFEDKI+LSDIVFCRT YK+D+P+ YN VTSLLLPP +K+ W GMKTTGQLKRER +
Sbjct: 639 FRATFEDKILLSDIVFCRTSYKIDVPRFYNLVTSLLLPPAEKNQWRGMKTTGQLKRERNI 698

Query: 185 HNDPQFDSMYT 195
             +   DSMYT
Sbjct: 699 RVEANRDSMYT 709

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
FB|FBgn0036686	1159	CG7728 [Drosophila melanogaste	0.575	0.128	0.647	5.7e-48
UNIPROTKB|F1RG23	399	BMS1 "Uncharacterized protein"	0.501	0.325	0.676	1.9e-44
UNIPROTKB|F1NH69	1304	BMS1 "Uncharacterized protein"	0.525	0.104	0.686	3.2e-44
RGD|1308043	392	Bms1 "BMS1 homolog, ribosome a	0.501	0.331	0.676	8.1e-44
ZFIN|ZDB-GENE-060720-2	1221	bms1l "BMS1-like, ribosome ass	0.498	0.105	0.666	1.6e-43
UNIPROTKB|F1PKN2	1287	BMS1 "Uncharacterized protein"	0.501	0.101	0.684	3.7e-43
UNIPROTKB|E1BPP2	1290	BMS1 "Uncharacterized protein"	0.501	0.100	0.684	7.7e-43
UNIPROTKB|Q14692	1282	BMS1 "Ribosome biogenesis prot	0.501	0.101	0.676	2e-42
CGD|CAL0002359	1210	BMS1 [Candida albicans (taxid:	0.521	0.111	0.594	2.7e-38
UNIPROTKB|Q5A9Y0	1210	BMS1 "Putative uncharacterized	0.521	0.111	0.594	2.7e-38

FB|FBgn0036686 CG7728 [Drosophila melanogaster (taxid:7227)]

 Score = 512 (185.3 bits), Expect = 5.7e-48, P = 5.7e-48
 Identities = 99/153 (64%), Positives = 124/153 (81%)

Query:    64 AEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQG 123
             +++ KKLKL G P KIYKKTAF+KDMFNS+LEVAKFEGAKI+TVSGIRGQIKKA + P+G
Sbjct:   911 SQIMKKLKLVGHPFKIYKKTAFVKDMFNSSLEVAKFEGAKIKTVSGIRGQIKKAHHTPEG 970

Query:   124 AFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERG 183
             ++RATFEDKI+LSDIVFCRTW++V++P+ Y PV+SLLLP +QK  W GMKT GQLKRER 
Sbjct:   971 SYRATFEDKILLSDIVFCRTWFRVEVPRFYAPVSSLLLPLDQKSQWQGMKTLGQLKRERA 1030

Query:   184 LHNDPQFDSMYTVSKVKRTGVYSTRASITLRKA 216
             + N  Q DSMYT   V++  ++     +T+ KA
Sbjct:  1031 VQNAAQPDSMYTTI-VRKEKIFRP---LTIPKA 1059

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1RG23 BMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 88/130 (67%), Positives = 105/130 (80%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             ++ KKLKLTG P KI+K T+FIK MFNS LEVA+FEGA IRTVSGIRGQIKKAL  P+GA
Sbjct:   139 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVARFEGAVIRTVSGIRGQIKKALRAPEGA 198

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRATFEDK+++SDIVF RTWY V +P  YNPVTSLL P  +KD+W+GM+TTGQL+   G+
Sbjct:   199 FRATFEDKLLMSDIVFMRTWYPVSVPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLVHGI 258

Query:   185 HNDPQFDSMY 194
                P  DS+Y
Sbjct:   259 KLKPNKDSLY 268

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 478 (173.3 bits), Expect = 3.2e-44, P = 3.2e-44
 Identities = 94/137 (68%), Positives = 108/137 (78%)

Query:    66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
             V KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P GAF
Sbjct:  1043 VVKKLKLTGFPFKIFKNTSFIKGMFNSQLEVAKFEGAAIRTVSGIRGQIKKALRAPAGAF 1102

Query:   126 RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
             RATFEDK+++SDIVF RTWY V IPK YNPVTSLL P  +KDSW GM+TTGQL+ ++G+ 
Sbjct:  1103 RATFEDKLLMSDIVFVRTWYPVSIPKFYNPVTSLLKPAGEKDSWKGMRTTGQLRHDQGIK 1162

Query:   186 NDPQFDSMYT-VSKVKR 201
                  DS+Y  + + KR
Sbjct:  1163 LKQNKDSLYKPIVREKR 1179

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308043 Bms1 "BMS1 homolog, ribosome assembly protein (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 88/130 (67%), Positives = 104/130 (80%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             ++ KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P+GA
Sbjct:   134 KIVKKLKLTGFPFKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGA 193

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRA+FEDK+++SDIVF RTWY V IP  YNPVTSLL P  +KD+W+GM+TT QL+   G+
Sbjct:   194 FRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTHQLRLAHGI 253

Query:   185 HNDPQFDSMY 194
                P  DS+Y
Sbjct:   254 KLKPNKDSLY 263

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)]

 Score = 471 (170.9 bits), Expect = 1.6e-43, P = 1.6e-43
 Identities = 86/129 (66%), Positives = 106/129 (82%)

Query:    66 VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
             + KKLKL G P KI+K T FI+ MFN+ LEVAKFEGA IRTVSGI+GQIKKAL  P GAF
Sbjct:   963 IVKKLKLIGYPYKIFKNTCFIQGMFNTILEVAKFEGASIRTVSGIKGQIKKALRTPPGAF 1022

Query:   126 RATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLH 185
             RATFED++++SDIVF R+WY V +P+LYNPVTSLL+P  QK +W+GM+T GQLK + G+H
Sbjct:  1023 RATFEDRLLMSDIVFLRSWYPVSVPRLYNPVTSLLMPVGQKHTWSGMRTLGQLKHDLGIH 1082

Query:   186 NDPQFDSMY 194
             N P+ DS+Y
Sbjct:  1083 NKPKQDSLY 1091

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 468 (169.8 bits), Expect = 3.7e-43, P = 3.7e-43
 Identities = 89/130 (68%), Positives = 105/130 (80%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             ++ KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P+GA
Sbjct:  1027 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGA 1086

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRA+FEDK+++SDIVF RTWY V IP  YNPVTSLL P  +KD+W+GM+TTGQL+   G+
Sbjct:  1087 FRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGV 1146

Query:   185 HNDPQFDSMY 194
                P  DS+Y
Sbjct:  1147 KLKPNKDSLY 1156

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 7.7e-43, P = 7.7e-43
 Identities = 89/130 (68%), Positives = 104/130 (80%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             ++ KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P+GA
Sbjct:  1030 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGA 1089

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRATFEDK+++SDIVF RTWY V IP  YNPVTSLL P  +KD+W+GM+TTGQL+   G+
Sbjct:  1090 FRATFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGI 1149

Query:   185 HNDPQFDSMY 194
                   DS+Y
Sbjct:  1150 KLKANKDSLY 1159

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 461 (167.3 bits), Expect = 2.0e-42, P = 2.0e-42
 Identities = 88/130 (67%), Positives = 104/130 (80%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             ++ KKLKLTG P KI+K T+FIK MFNS LEVAKFEGA IRTVSGIRGQIKKAL  P+GA
Sbjct:  1022 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGA 1081

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRA+FEDK+++SDIVF RTWY V IP  YNPVTSLL P  +KD+W+GM+TTGQL+   G+
Sbjct:  1082 FRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGV 1141

Query:   185 HNDPQFDSMY 194
                   DS+Y
Sbjct:  1142 RLKANKDSLY 1151

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0042255 "ribosome assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

CGD|CAL0002359 BMS1 [Candida albicans (taxid:5476)]

 Score = 422 (153.6 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 82/138 (59%), Positives = 104/138 (75%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             E+ KKLKL G P KI++ TAFIKDMF+++LEVAKFEGA+IRTVSGIRG+IK+AL+KP G 
Sbjct:   953 EIVKKLKLVGYPYKIFRNTAFIKDMFSNSLEVAKFEGAQIRTVSGIRGEIKRALSKPDGY 1012

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRATFEDKI++SD +F +TWY V + K YNPVTSLLL   Q   W GM+ TGQ++ +  +
Sbjct:  1013 FRATFEDKILMSDTIFLKTWYPVKVKKFYNPVTSLLLG--QHSEWKGMRLTGQVRADENI 1070

Query:   185 HNDPQFDSMYT-VSKVKR 201
                   DS Y  V +V+R
Sbjct:  1071 ATPLNVDSQYKKVERVER 1088

GO:0035690 "cellular response to drug" evidence=IMP

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034511 "U3 snoRNA binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

UNIPROTKB|Q5A9Y0 BMS1 "Putative uncharacterized protein BMS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 422 (153.6 bits), Expect = 2.7e-38, P = 2.7e-38
 Identities = 82/138 (59%), Positives = 104/138 (75%)

Query:    65 EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
             E+ KKLKL G P KI++ TAFIKDMF+++LEVAKFEGA+IRTVSGIRG+IK+AL+KP G 
Sbjct:   953 EIVKKLKLVGYPYKIFRNTAFIKDMFSNSLEVAKFEGAQIRTVSGIRGEIKRALSKPDGY 1012

Query:   125 FRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGL 184
             FRATFEDKI++SD +F +TWY V + K YNPVTSLLL   Q   W GM+ TGQ++ +  +
Sbjct:  1013 FRATFEDKILMSDTIFLKTWYPVKVKKFYNPVTSLLLG--QHSEWKGMRLTGQVRADENI 1070

Query:   185 HNDPQFDSMYT-VSKVKR 201
                   DS Y  V +V+R
Sbjct:  1071 ATPLNVDSQYKKVERVER 1088

GO:0035690 "cellular response to drug" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94653	BMS1_SCHPO	No assigned EC number	0.5923	0.4942	0.1141	yes	N/A
Q08965	BMS1_YEAST	No assigned EC number	0.5724	0.5212	0.1141	yes	N/A
Q14692	BMS1_HUMAN	No assigned EC number	0.6821	0.4980	0.1006	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	1e-36
pfam04950	293	pfam04950, DUF663, Protein of unknown function (DU	1e-31
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	1e-07

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  137 bits (345), Expect = 1e-36
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 64  AEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQG 123
           A++ KKLKL G P +I + T F++DMF S LEV KFEGA ++ VSG+RGQ+K    K  G
Sbjct: 843 AKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK-NG 901

Query: 124 AFRATFEDKIMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERG 183
            +RA FE K+++SDI+  R +  V++ +++ PV +LL        W G++   +++   G
Sbjct: 902 EYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLG------KWRGLRRLHEIRESLG 955

Query: 184 LHNDPQFDSMY 194
           L +     +  
Sbjct: 956 LTHSYAPQNDS 966

Length = 1077

>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663)

 Score =  117 bits (295), Expect = 1e-31
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 65  EVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGA 124
            + KKLKLTG P KI+KKTAF++ MF +  +V  F+   + T SG RG IK+AL    G 
Sbjct: 212 IIAKKLKLTGHPYKIFKKTAFVRYMFFNPEDVEWFKPVPLFTKSGRRGHIKEALG-THGY 270

Query: 125 FRATFEDKIMLSDIVFCRTWYKV 147
           F+ATF+ K+ + DIV  + + +V
Sbjct: 271 FKATFDGKLNMQDIVIMKLYKRV 293

This family contains several uncharacterized eukaryotic proteins. Length = 293

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 66  VTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAF 125
           + K+  LTG P K +K+   ++ MF S  +V  F+  ++ T  G  G IK+ L    G F
Sbjct: 678 IAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGT-HGYF 736

Query: 126 RATFEDKIMLSDIV 139
           +ATF  KI   D V
Sbjct: 737 KATFSGKIKSQDKV 750

Length = 769

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	100.0
PF04950	297	DUF663: Protein of unknown function (DUF663); Inte	100.0
KOG1980|consensus	754		100.0
COG5177	769	Uncharacterized conserved protein [Function unknow	99.94
KOG0461|consensus	522		82.46

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-41  Score=335.76  Aligned_cols=159  Identities=32%  Similarity=0.521  Sum_probs=155.7

Q ss_pred             CCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEeccc
Q psy5891          53 EDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDK  132 (259)
Q Consensus        53 ~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEdk  132 (259)
                      .-||+..+|-+..|||||||+|+|++|++||+|||+||+|.+||++|+||+|+||||+||+||.|+|. +|+|||.||++
T Consensus       832 a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~k-~g~yra~fe~k  910 (1077)
T COG5192         832 ALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGK-NGEYRAVFEGK  910 (1077)
T ss_pred             EeeeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccCC-Cccchheeccc
Confidence            35899999999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             cccCCEEEecccccccccccccccccCCCCCCCCCCCcccchHHHHHHHhCCCCCCCCCCCCcccccCcccccCccCCHH
Q psy5891         133 IMLSDIVFCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYTVSKVKRTGVYSTRASIT  212 (259)
Q Consensus       133 Il~sDiVfLR~wYkr~~PKfynpvts~l~p~~~k~~W~gMrt~geLR~e~~i~~p~~~DS~Ykpi~R~~r~fnpl~IPk~  212 (259)
                      |+|||||.||+||||.+.+||+||+|+|+      .|+|+|.++|+|...|+..|.++||.|-.+||..++|+.+.+|+.
T Consensus       911 mlmsdii~lr~~~pv~v~r~~~pv~~ll~------~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~  984 (1077)
T COG5192         911 MLMSDIITLRCFVPVEVHRIFIPVDNLLG------KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPRE  984 (1077)
T ss_pred             hhhhheeeEEeeeeeEEEEeeccHHHHHH------HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHh
Confidence            99999999999999999999999999986      699999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q psy5891         213 LRKAKG  218 (259)
Q Consensus       213 Lq~~L~  218 (259)
                      +|+.||
T Consensus       985 ie~~lp  990 (1077)
T COG5192         985 IESKLP  990 (1077)
T ss_pred             HHhhCC
Confidence            999999

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus

Probab=100.00  E-value=8e-39  Score=291.57  Aligned_cols=97  Identities=47%  Similarity=0.647  Sum_probs=73.8

Q ss_pred             CCCCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEe
Q psy5891          50 SSDEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATF  129 (259)
Q Consensus        50 ~~~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatF  129 (259)
                      .---.|+++++||+++|+|||+|+|+|+||||||||||+||+|++||+||+|++|+|+||+||+||+|||+ ||+|||+|
T Consensus       201 ~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt-~G~fka~F  279 (297)
T PF04950_consen  201 RLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGT-HGYFKATF  279 (297)
T ss_dssp             -B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTT-TTBBEEEE
T ss_pred             eEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECC-CCcEEEEE
Confidence            34457999999999999999999999999999999999999999999999999999999999999999987 99999999


Q ss_pred             ccccccCCEEEecccccc
Q psy5891         130 EDKIMLSDIVFCRTWYKV  147 (259)
Q Consensus       130 EdkIl~sDiVfLR~wYkr  147 (259)
                      ||+|+++|||||+.|++|
T Consensus       280 ~~~i~~~D~V~~~lykrV  297 (297)
T PF04950_consen  280 EDKIKQSDIVFMRLYKRV  297 (297)
T ss_dssp             SS---SS-EEEEE-----
T ss_pred             CCcCCCCCEEEEecCCCC
Confidence            999999999999777764

; PDB: 1WB1_D 1WB3_B 1WB2_A.

>KOG1980|consensus

Probab=100.00  E-value=2.5e-34  Score=284.89  Aligned_cols=100  Identities=30%  Similarity=0.382  Sum_probs=97.7

Q ss_pred             CCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEecc
Q psy5891          52 DEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFED  131 (259)
Q Consensus        52 ~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEd  131 (259)
                      =..|+++++||+|+|+||.+|+||||||||+.++||+||||++||.||++++|+|++|++|+||+|||| ||+|||+|++
T Consensus       648 iAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGT-HG~fKc~Fdg  726 (754)
T KOG1980|consen  648 IATGSLLNCDPDRIVAKRAVLSGHPFKIHKKYVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGT-HGYFKCYFDG  726 (754)
T ss_pred             eeeeeeeccCCcceeEeeeeecCCCceeeeeeEEEeeecCCHhHeeeecceeeeccccccccccccccC-cceeEEEecC
Confidence            357999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ccccCCEEEecccccccccccc
Q psy5891         132 KIMLSDIVFCRTWYKVDIPKLY  153 (259)
Q Consensus       132 kIl~sDiVfLR~wYkr~~PKfy  153 (259)
                      +|+.+|+|+| +||||+||+|.
T Consensus       727 kLksqDtV~M-sLYKRvfP~~~  747 (754)
T KOG1980|consen  727 KLKSQDTVMM-SLYKRVFPKWT  747 (754)
T ss_pred             cccccchHHH-HHHHhhccccc
Confidence            9999999999 99999999993

>COG5177 Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=6.7e-28  Score=236.43  Aligned_cols=111  Identities=32%  Similarity=0.328  Sum_probs=101.6

Q ss_pred             ccccCC-CCC--CCCCccccCCCCeeEEEeEEEEeeeeEEeeceEEEeccCCChhhhcccccceEEecccccceeecccC
Q psy5891          43 DESADD-NSS--DEDETVEPKVFYAEVTKKLKLTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALN  119 (259)
Q Consensus        43 ~~~~~~-~~~--~~~gt~~~~d~~~~IvKKlKLtG~P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalg  119 (259)
                      -.||-| +++  -..|+..++|++++|+||.+|+|||||+||+.++||+||||++||.||++++|.|++|+.|.||+|||
T Consensus       652 kkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplG  731 (769)
T COG5177         652 KKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLG  731 (769)
T ss_pred             ccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecchhhhhhcCccceeccccc
Confidence            345444 332  35899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEeccccccCCEEEecccccccccccccc
Q psy5891         120 KPQGAFRATFEDKIMLSDIVFCRTWYKVDIPKLYNP  155 (259)
Q Consensus       120 tp~G~FRatFEdkIl~sDiVfLR~wYkr~~PKfynp  155 (259)
                      | ||+|||||+++|..+|+|.| +||||.+|.=+.|
T Consensus       732 T-hGyFKatF~gki~~qD~VaM-SLYKRm~p~p~~~  765 (769)
T COG5177         732 T-HGYFKATFSGKIKSQDKVAM-SLYKRMFPEPQLP  765 (769)
T ss_pred             C-cceeeEEecCcccccchhhH-HHHHHhccCcccc
Confidence            9 99999999999999999999 9999999975544

>KOG0461|consensus

Probab=82.46  E-value=0.69  Score=46.22  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=56.5

Q ss_pred             eeEEEeEEEEeeeeEEeec-eEEEeccCCChhhhcccccceEEecccccceeecccCCCCceeEEEeccccccCC
Q psy5891          64 AEVTKKLKLTGVPMKIYKK-TAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRATFEDKIMLSD  137 (259)
Q Consensus        64 ~~IvKKlKLtG~P~KI~K~-TAfIk~MF~S~lEV~kFkga~LrTvsGIRG~IKkalgtp~G~FRatFEdkIl~sD  137 (259)
                      +.|.||=-=.|+--++.+. .+.+++||--.--..-|.|-++.+.+|-||.|-.++|. .|.||.+|-+++...-
T Consensus       421 lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStGe~G~Ie~aFGq-sgKf~itf~~~lspe~  494 (522)
T KOG0461|consen  421 LRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTGERGKIEGAFGQ-SGKFRITFAEKLSPEL  494 (522)
T ss_pred             hhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccCCccceeccccC-cceEEEEecccCChhh
Confidence            3344444444555554443 34578999988888889999999999999999999998 8999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 53/202 (26%)

Query: 13  TARRHKITSALAGLNSKEEEEEEQEDSAFSDESADDNSSDEDETVEPKVF--YAEV-TKK 69
           T R  ++T  L+   +     +    +  +           DE     +   Y +   + 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMT-LT----------PDEVKS--LLLKYLDCRPQD 317

Query: 70  LK---LTGVPMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGIRGQIKKALN--KP--- 121
           L    LT  P ++      I+D   +          K+ T+      I+ +LN  +P   
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEY 371

Query: 122 QGAFR--ATFEDKIMLSDIVFCRTWYKVD-------IPKLYNPVTSLLLPPEQKDSWTG- 171
           +  F   + F     +  I+    W+ V        + KL+    SL+    +K      
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLV----EKQPKEST 425

Query: 172 -------MKTTGQLKRERGLHN 186
                  ++   +L+ E  LH 
Sbjct: 426 ISIPSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 46/181 (25%)

Query: 84  AFIKDM-FNSTLEVAKFEGAKIRTVSGIRGQIKKALNKPQGAFRA-----TFEDKIMLSD 137
           AF+ +       ++ K     I +    + +I   +              T   K    +
Sbjct: 28  AFVDNFDCKDVQDMPK----SILS----KEEIDHIIMSKDAVSGTLRLFWTLLSK--QEE 77

Query: 138 IV--FCRTWYKVDIPKLYNPVTSLLLPPEQKDSWTGMKTTGQLKRERGLHNDPQFDSMYT 195
           +V  F     +++   L +P+ +     EQ+   + M      +R+R L+ND Q  + Y 
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKT-----EQRQP-SMMTRMYIEQRDR-LYNDNQVFAKYN 130

Query: 196 VSKVK-----RTGVYSTRASITLRKAK----------GKTSLGLFSNPFFTELSKKPKTV 240
           VS+++     R  +        LR AK          GKT + L     +    K    +
Sbjct: 131 VSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 241 F 241
           F
Sbjct: 185 F 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.65

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.65  E-value=2.5e-17  Score=154.14  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=75.6

Q ss_pred             CCccccCCCCeeEEEeEEEEeeeeE-----EeeceEEEeccCCChhhhcccccceEEecccc-cceeecccCCCCceeEE
Q psy5891          54 DETVEPKVFYAEVTKKLKLTGVPMK-----IYKKTAFIKDMFNSTLEVAKFEGAKIRTVSGI-RGQIKKALNKPQGAFRA  127 (259)
Q Consensus        54 ~gt~~~~d~~~~IvKKlKLtG~P~K-----I~K~TAfIk~MF~S~lEV~kFkga~LrTvsGI-RG~IKkalgtp~G~FRa  127 (259)
                      -|.+..+.+    +++++|.....|     ++++|+++++||++..|++||.|.+|+|++|. +|+|+.++|+ +|.|||
T Consensus       387 ~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~-~G~~~~  461 (482)
T 1wb1_A          387 HGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT-KGLLTA  461 (482)
T ss_dssp             BCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT-TTBBCC
T ss_pred             EEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC-CceEEE
Confidence            356655544    455555555444     78899999999999999999999999999999 9999999999 999999


Q ss_pred             EeccccccCCEEEecccccc
Q psy5891         128 TFEDKIMLSDIVFCRTWYKV  147 (259)
Q Consensus       128 tFEdkIl~sDiVfLR~wYkr  147 (259)
                      +|+++|.+||+||| .+|+|
T Consensus       462 ~f~~~~~~~d~v~~-~~~~~  480 (482)
T 1wb1_A          462 EFSGNVENRDKVIL-NRLRR  480 (482)
T ss_dssp             CBSSCCCSSCEEEE-ECCCS
T ss_pred             EecCCCCCCCeeee-ehhhc
Confidence            99999999999999 77765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1wb1a2	79	Elongation factor SelB, domains 2 and 4 {Methanoco	97.1

>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.10  E-value=0.00019  Score=53.34  Aligned_cols=65  Identities=26%  Similarity=0.364  Sum_probs=62.6

Q ss_pred             eeEEeeceEEEeccCCChhhhcccccceEEeccc-ccceeecccCCCCceeEEEeccccccCCEEEe
Q psy5891          76 PMKIYKKTAFIKDMFNSTLEVAKFEGAKIRTVSG-IRGQIKKALNKPQGAFRATFEDKIMLSDIVFC  141 (259)
Q Consensus        76 P~KI~K~TAfIk~MF~S~lEV~kFkga~LrTvsG-IRG~IKkalgtp~G~FRatFEdkIl~sDiVfL  141 (259)
                      -.||-|+.++|-++-.|..-..+-.|-++++.++ |.|.||-.+|| .|+.-|-|++.+...|.|.|
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~TfGT-kG~l~adF~geV~n~dkV~L   72 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT-KGLLTAEFSGNVENRDKVIL   72 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT-TTBBCCCBSSCCCSSCEEEE
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccccC-ceEEEEEeccccCCCceehh
Confidence            4688999999999999999999999999999999 99999999999 99999999999999999998